Citrus Sinensis ID: 010019

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520
Protein Sequence
MRTVPKSYYKHFSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLGLDDYNK
Secondary Structure (PSIPRED)
cccccccHHccccHHHHccHHHHHccccccccccccccccccccccccHHHHHcccccHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHcccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHcHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEcccccccEcHHccccEEcccccccccccccccccEEHHHHHHHHcccccccEEEcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mrtvpksyykhfsnseqidfqkqsslitlpqprahpfvpkdhpffvrtdltahemgppktvrTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLqgvdlsgivkcvpgesslkdnplIQSLERLkqldlnskdkfsdeDLNEMMGLFDKLIELcggnegsvNAAVATKNGGVELVCSICYkmrcgskrvLDSCLKTMALLVHDvqstetfrtgggpKLLVNILidgnedpeilNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLltpdddqvvASQVYGYARRFAKIGIARALVHSLhaglsspslISASIALKAVAVNDEICKSVAENGGIDALLRCIddsglqgnKTVARICCSLLsklagsdsnksaiienggMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLkfpnaqqlqrSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRdlglddynk
Flexible Loop (DISEMBL)
MRTVPKSYYKHfsnseqidfqKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPgesslkdnplIQSLErlkqldlnskdkfsdEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVqstetfrtgggpKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLsklagsdsnksAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAAtdalrdlglddynk
Low Complexity Region (SEG)
MRTVPKSYYKHFSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMelkidelileilSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHaglsspslisasialkavaVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLGLDDYNK
Disordered region (IsUnstruct)
*************************************V*KDHPFFVRTDLT**************************************DAIQTLSLQGVDLSGIVKCVP*********************************NEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD*NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL****************LAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQA***HEICK*****************
Disordered Region (DISOPRED)
******SYY**F*************************VPKDHPFFVR*******************EAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSG********************ERLK****************EMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKEN*E*CKDAATDALRDLGLD****
Disordered Region (DISEMBL)
MRTVPKSYYKHFSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLGLDDYNK
Disordered Region (DISPRO)
***VPKSYYKHFSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLGLD****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTVPKSYYKHFSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLGLDDYNK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	520	2.2.26 [Sep-21-2011]
Q6NXE6	501	Armadillo repeat-containi	yes	no	0.840	0.872	0.263	7e-36
Q5RD03	501	Armadillo repeat-containi	yes	no	0.834	0.866	0.263	1e-35
Q8BNU0	468	Armadillo repeat-containi	yes	no	0.840	0.933	0.272	2e-33
Q7K486	464	Armadillo repeat-containi	yes	no	0.844	0.946	0.238	2e-24
Q54I71	757	Protein aardvark OS=Dicty	yes	no	0.288	0.198	0.243	0.0007

>sp|Q6NXE6|ARMC6_HUMAN Armadillo repeat-containing protein 6 OS=Homo sapiens GN=ARMC6 PE=1 SV=2

 Score =  152 bits (384), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 218/471 (46%), Gaps = 34/471 (7%)

Query: 62  RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS-LKDNPL 120
           + I+QE FD  V+EN+E+  M P EA+++A++    QGVDLS IVK  P  S+     P 
Sbjct: 29  KRIAQETFDAAVRENIEEFAMGPEEAVKEAVEQFESQGVDLSNIVKTAPKVSADGSQEPT 88

Query: 121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCS 180
              L+ L  L    ++  +     E+     +  + C  ++      +A + G   ++ +
Sbjct: 89  HDILQMLSDL----QESVASSRPQEVSAYLTRFCDQCKQDKAC--RFLAAQKGAYPIIFT 142

Query: 181 ICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGF 240
                  G + +L   L  +++L              G +LLV  L    ++ ++  SG 
Sbjct: 143 AWKLATAGDQGLLLQSLNALSVLT---DGQPDLLDAQGLQLLVATLTQNADEADLTCSGI 199

Query: 241 AVVAASATGNEVVKESYMELKIDELILEILSRQ--RNDSIQSLYDAIRVLLTPDDDQVVA 298
             V  +   +E  ++  ++  +  L+   ++      D ++    A+RV+   DD +V  
Sbjct: 200 RCVRHACLKHEQNRQDLVKAGVLPLLTGAITHHGHHTDVVREACWALRVMTFDDDIRVP- 258

Query: 299 SQVYGYARRFAKIGIA-----RALVHSLHAGLSSPSLISASIA-LKAVAVNDEICKSVAE 352
              +G+A   AK+ +      + L+ +  A L +P ++S     L  +A+ +E C+ V +
Sbjct: 259 ---FGHAHNHAKMIVQENKGLKVLIEATKAFLDNPGILSELCGTLSRLAIRNEFCQEVVD 315

Query: 353 NGGIDALLRCI---------DDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDK 403
            GG+  L+  +         D SG+Q    + +   S L  +AG+D  K AI+  GG + 
Sbjct: 316 LGGLSILVSLLADCNDHQMRDQSGVQ---ELVKQVLSTLRAIAGNDDVKDAIVRAGGTES 372

Query: 404 LIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQR 463
           ++    +      V ++  + +  L+LR P+N+   +E G    A+QAM   P    +Q+
Sbjct: 373 IVAAMTQHLTSPQVCEQSCAALCFLALRKPDNSRIIVEGGGAVAALQAMKAHPQKAGVQK 432

Query: 464 SSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLG 514
            +C +IRNLVA      K +L  G E LI QA+  H  C+D A  ALRDLG
Sbjct: 433 QACMLIRNLVAHGQAFSKPILDLGAEALIMQARSAHRDCEDVAKAALRDLG 483

Homo sapiens (taxid: 9606)

>sp|Q5RD03|ARMC6_PONAB Armadillo repeat-containing protein 6 OS=Pongo abelii GN=ARMC6 PE=2 SV=1

 Score =  151 bits (382), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 125/474 (26%), Positives = 230/474 (48%), Gaps = 40/474 (8%)

Query: 62  RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS----LKD 117
           + I+QE FD  V+EN+E+  M P EA+++A++    QGVDLS IVK  P  S+       
Sbjct: 29  KRIAQETFDAAVRENIEEFAMGPDEAVKEAVEQFESQGVDLSNIVKTAPKVSADGSQEPT 88

Query: 118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVEL 177
           + ++Q+L  L++   +S+ +       E+     +  + C  ++      +A + G   +
Sbjct: 89  HDILQTLSDLQESVASSRPQ-------EVSAYLTRFCDQCKQDKAC--RFLAAQKGAYPI 139

Query: 178 VCSICYKMRCGSKRVLDSCLKTMALLVH---DVQSTETFRTGGGPKLLVNILIDGNEDPE 234
           + +       G + +L   L  +++L     D+  T+      G +LLV  L    ++ +
Sbjct: 140 IFTAWKLATAGDQGLLLQSLNALSVLTDGQPDLLDTQ------GLQLLVATLTRNADEAD 193

Query: 235 ILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--DSIQSLYDAIRVLLTPD 292
           +  SG   V  +   +E  ++  ++  +  L+   ++   +  D ++    A+RV+   D
Sbjct: 194 LTCSGIRCVRHACLKHEQNRQDLVKAGVLPLLTGAITHHGHHADVVREACCALRVMTFDD 253

Query: 293 DDQVVASQVYGYARRFAKIGIA-----RALVHSLHAGLSSPSLISASIA-LKAVAVNDEI 346
           D +V     +G+A   AK+ +      + L+ +  A L +P ++S     L  +A+ +E 
Sbjct: 254 DIRVP----FGHAHNHAKMIVQENKGLKVLIEATKAFLDNPGILSELCGTLSRLAIRNEF 309

Query: 347 CKSVAENGGIDALLRCIDDS-----GLQGN-KTVARICCSLLSKLAGSDSNKSAIIENGG 400
           C+ V + GG+  L+  + D      G Q + + + +   S+L  +AG+D  K AI+  GG
Sbjct: 310 CQEVVDLGGLSILVSLLADCNDHQMGDQSSVQELVKQVLSILRAIAGNDDVKDAIVRAGG 369

Query: 401 MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ 460
            + ++    +      V ++  + +  L+LR P+N+   +E G    A+QAM   P    
Sbjct: 370 TESIVAAMTQHLTSPQVCEQSCAALCFLALRKPDNSRIIVEGGGAVAALQAMKAHPQKAG 429

Query: 461 LQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLG 514
           +Q+ +C +IRNLVA +    K +L  G E LI QA+  H  C+D A  ALRDLG
Sbjct: 430 VQKQACMLIRNLVAHSQAFSKPILDLGAEALIMQARSAHRDCEDVAKAALRDLG 483

Pongo abelii (taxid: 9601)

>sp|Q8BNU0|ARMC6_MOUSE Armadillo repeat-containing protein 6 OS=Mus musculus GN=Armc6 PE=2 SV=1

 Score =  144 bits (363), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 126/463 (27%), Positives = 222/463 (47%), Gaps = 26/463 (5%)

Query: 62  RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGES--SLKDNP 119
           + I+QE FD  V+EN+E+  M   EA+++A++    QGVDLS IVK +P  S   L++ P
Sbjct: 4   KRITQETFDAAVRENIEEFEMGTEEAIREAVEQFESQGVDLSNIVKTIPKVSLDGLQE-P 62

Query: 120 LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVC 179
               L+ L  L    ++  +   L E+     +  + C   + S    +A + G   ++ 
Sbjct: 63  THSVLQALNDL----QESLTGSRLQEVSAHLVRFCDQCKQQKAS--RYLAAQKGAYPILL 116

Query: 180 SICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSG 239
           +  +++   S + L         ++ D Q         G  LLV  L     + E+   G
Sbjct: 117 AA-WQLAATSNQGLLLQALNALAVLTDGQPD--LLDAQGLHLLVATLAQNAANTELTCCG 173

Query: 240 FAVVAASATGNEVVKESYMELKIDELILEILSR--QRNDSIQSLYDAIRVLLTPDDDQVV 297
              V      +E  ++  ++  +  L+   +++  Q  D ++    A+RV+   DD +V 
Sbjct: 174 IRCVRHVCLKHEQNRQDLVKAGVLPLLTAAITQHGQHADVVREACWALRVMTFDDDIRVP 233

Query: 298 ASQVYGYARRFAKIGIA-----RALVHSLHAGLSSPSLISASIA-LKAVAVNDEICKSVA 351
               +G+A   AK+ +      + L+ +  A   +P ++S   + L  +AV +E C+ V 
Sbjct: 234 ----FGHAHEHAKMIVQENKGLKVLIEAARAFSDNPGVLSELCSTLSRLAVRNEFCQEVI 289

Query: 352 ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF 411
           + GG+  L+  + D     ++ + +   S L  +AG+D  K AI+  GG + ++    R 
Sbjct: 290 DLGGLGILVTLLADCN--DHQDLVKQVLSALRAIAGNDDVKDAIVRAGGTESIVAAMTRH 347

Query: 412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN 471
                V ++  + + VL+LR P+N+   +E G    A+QAM   P    +Q+ +C +IRN
Sbjct: 348 LASPQVCEQSCAALCVLALRKPDNSRVIIEGGGALAALQAMKAHPQEAGVQKQACMLIRN 407

Query: 472 LVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLG 514
           LV+R+    K +L  G E+LI QA+  H  C+D A  ALRDLG
Sbjct: 408 LVSRSQVFSKPILDLGAEELILQARAAHPDCEDVAKAALRDLG 450

Mus musculus (taxid: 10090)

>sp|Q7K486|ARMC6_DROME Armadillo repeat-containing protein 6 homolog OS=Drosophila melanogaster GN=CG5721 PE=1 SV=1

 Score =  114 bits (285), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 109/457 (23%), Positives = 218/457 (47%), Gaps = 18/457 (3%)

Query: 62  RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI 121
           + ISQ+ FD+VVKEN+ +  M P+EA ++ I+    QG++L+ I+K +          + 
Sbjct: 3   KVISQDTFDDVVKENVVEFSMTPSEAKEETIKQFEAQGINLANIIKDLSVNPQTGQPVIN 62

Query: 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSV-NAAVATKNGGVELVCS 180
           ++++++K+           + L E   L ++L  L    + S+ +  +A KNG  + + +
Sbjct: 63  ETVDKIKE--------HIGQKLEETTELLEQLATLDAECKKSLAHRVLAGKNGAHDALIT 114

Query: 181 ICYKMRCG---SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILN 237
           +  +       ++ VL   L+ +  L H  +  + F       +++ +L    E  E+  
Sbjct: 115 LLEETLSAESPNESVLKKSLEAINSLTH--KQPDLF-DAEAMAVVLKLLALKVESEEVTL 171

Query: 238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV 297
                +  +   +E+ +++ M     +L+  +L + ++  ++ L    R L+  DD +V 
Sbjct: 172 LTLQWLQKACIMHEMNRQNIMNTSALKLMKPLLGKGKDRLVRELTAVFRFLVLDDDIRVE 231

Query: 298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGID 357
               + +AR+ A   +   LV  L A      L    + +  +AV  E+C ++ E GG+ 
Sbjct: 232 FGCAHEHARQIAG-EVLITLVELLPAYQDPNVLADLLLTIGTLAVRQELCTAIDEAGGLK 290

Query: 358 ALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASV 417
           ++   I  S L   + + R    LL  LAG DS KS I++ G    +  +      + ++
Sbjct: 291 SVFE-IMSSNLDEVR-LNREALKLLRALAGQDSVKSHIVQQGVAPIIKQLLETHQSNENI 348

Query: 418 LQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP 477
           +   ++ +T L+LR  E++A   + G  ++ ++A+   P  + +QR+  + IRN+V+R+ 
Sbjct: 349 VAAALACVTTLTLRVQEHSAAFFDTGIAEVIVEALRAHPKHKIVQRNGAWAIRNMVSRSR 408

Query: 478 ENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLG 514
              +  +S GVE L+  A + H   +     ALRDLG
Sbjct: 409 NQCETWISFGVEDLLNMAMKEHPSVEQDIKAALRDLG 445

Drosophila melanogaster (taxid: 7227)

>sp|Q54I71|AARA_DICDI Protein aardvark OS=Dictyostelium discoideum GN=aarA PE=2 SV=1

 Score = 46.2 bits (108), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 14/164 (8%)

Query: 371 NKTVARICCSLLSKLA----GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIIT 426
           N  + R  C +L +L+      D ++S I   GG+  ++        DA V ++    + 
Sbjct: 422 NPMILRETCYILKRLSYRQRKEDEHESLIARYGGISLILQAMKNHPYDAGVQEDACGALG 481

Query: 427 VLSLRSPENAA--------RAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE 478
            L+  SP N            +E G   L +QAM        +Q ++ F++RNL   +  
Sbjct: 482 NLTCDSPNNMGLYSNDNYLSVVEQGGIQLILQAMKNHMMNPGVQYNTSFVLRNLARNDVS 541

Query: 479 NRKLLLSNGVEKLIRQAKE--NHEICKDAATDALRDLGLDDYNK 520
             ++ +  G++ +    K   NH   +     ALR+LG +D NK
Sbjct: 542 ESRVAIEGGIQSIATAMKNHPNHIGIQTQGCGALRNLGCNDSNK 585

Required to regulate pattern formation during multi-cellular stages of development and for the formation of adherens junctions. Plays a structural role during the regulation of stalk formation. Involved in cell signaling. Required for spore-cell differentiation. Overexpression increases number and size of cell junctions and reduces spore-cell formation.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	520
224123442	461	predicted protein [Populus trichocarpa]	0.882	0.995	0.738	0.0
225428709	460	PREDICTED: armadillo repeat-containing p	0.876	0.991	0.720	0.0
224105507	453	predicted protein [Populus trichocarpa]	0.867	0.995	0.714	0.0
255561675	719	Armadillo repeat-containing protein, put	0.911	0.659	0.682	0.0
449438432	465	PREDICTED: armadillo repeat-containing p	0.892	0.997	0.706	0.0
449517545	465	PREDICTED: armadillo repeat-containing p	0.892	0.997	0.706	0.0
217074674	459	unknown [Medicago truncatula] gi|3885189	0.871	0.986	0.672	1e-178
356521205	463	PREDICTED: armadillo repeat-containing p	0.873	0.980	0.653	1e-169
147858319	449	hypothetical protein VITISV_035941 [Viti	0.813	0.942	0.671	1e-163
18418335	464	armadillo/beta-catenin-like repeat-conta	0.880	0.987	0.638	1e-159

>gi|224123442|ref|XP_002330316.1| predicted protein [Populus trichocarpa] gi|222871351|gb|EEF08482.1| predicted protein [Populus trichocarpa]

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/466 (73%), Positives = 401/466 (86%), Gaps = 7/466 (1%)

Query: 55  MGPP-KTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGES 113
           MGPP K VRTISQEAFDE+VKEN+EDLG++PTEAL+DAIQTL+LQGVDLSGIV CVPGE 
Sbjct: 1   MGPPSKNVRTISQEAFDELVKENIEDLGLDPTEALEDAIQTLTLQGVDLSGIVTCVPGEG 60

Query: 114 SLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNG 173
           ++++NP+I+ LERLK+L       F D+DL+EM+GL D+L+ L  G EGS N A+  +NG
Sbjct: 61  NVRENPVIKCLERLKEL------GFDDDDLDEMVGLLDELVGLFTGVEGSGNVAIGVRNG 114

Query: 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDP 233
           G+ELVCSIC  +   S++VL S LKT+ALL+HDVQSTE FR+  GPK++V IL  G+E  
Sbjct: 115 GLELVCSICSNIPIVSEKVLVSALKTLALLIHDVQSTEMFRSSDGPKMVVGILKGGSESL 174

Query: 234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD 293
           E+LN+GFAVVAA+ATGNEVVKE  +ELKIDELILE+L+RQ    IQ LYD+IRVLLTPDD
Sbjct: 175 EVLNTGFAVVAAAATGNEVVKELLIELKIDELILEVLNRQSKGIIQGLYDSIRVLLTPDD 234

Query: 294 DQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAEN 353
           ++VVASQVYGYARRFAKIGIARALV SL +GL+SPSL+SASIALKAVAVNDEICKS+AE+
Sbjct: 235 NRVVASQVYGYARRFAKIGIARALVESLRSGLTSPSLVSASIALKAVAVNDEICKSIAES 294

Query: 354 GGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSD 413
           GGID + +CIDDSG  GNK VAR CCSLLSKLAGSDSNKSAI+E  GM+KLI ++ARFSD
Sbjct: 295 GGIDVIFKCIDDSGEHGNKIVARACCSLLSKLAGSDSNKSAIVEKEGMNKLIQLAARFSD 354

Query: 414 DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473
           D SVLQEVMSI TVL LRSP+NAARAMEAG+GDLAIQAM KF N QQLQRSSC MIRNLV
Sbjct: 355 DPSVLQEVMSIFTVLCLRSPDNAARAMEAGAGDLAIQAMEKFSNVQQLQRSSCLMIRNLV 414

Query: 474 ARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLGLDDYN 519
           ARNPENR LLLS+G+EK+IR+AK NHE CKDAATDALRDLGLD+YN
Sbjct: 415 ARNPENRTLLLSHGIEKIIRRAKVNHETCKDAATDALRDLGLDNYN 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428709|ref|XP_002281840.1| PREDICTED: armadillo repeat-containing protein 6 [Vitis vinifera] gi|297741329|emb|CBI32460.3| unnamed protein product [Vitis vinifera]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/468 (72%), Positives = 392/468 (83%), Gaps = 12/468 (2%)

Query: 55  MGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS 114
           MG  K VRTISQ AFDE+V+ENMEDLGMEP EAL+DA+QTL+LQGVDLSGIV CVPG+ S
Sbjct: 1   MGQKKGVRTISQAAFDELVRENMEDLGMEPAEALEDALQTLTLQGVDLSGIVACVPGDGS 60

Query: 115 LKDNPLIQSLERLKQLDLNSKDKFSDE-DLNEMMGLFDKLIELCGGNEGSVNAAVATKNG 173
           + DNP+IQSL+RLKQLD       SD     EM+ +FDKL ELC   EGS NAA+AT+NG
Sbjct: 61  VGDNPVIQSLDRLKQLD-------SDWVGFGEMVEVFDKLTELCS-IEGSDNAAIATRNG 112

Query: 174 GVELVCSICYKMR--CGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNE 231
           GVE+VCS+C K+R  C    VL S L TMA L+HDVQSTETF+  GGPK++V +L D ++
Sbjct: 113 GVEVVCSVCSKIRVGCEGDSVLVSGLTTMASLLHDVQSTETFQKIGGPKIVVGVLNDASQ 172

Query: 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP 291
           + +ILNSGF+VVAA+ATGNE++KES+M+L+IDELI++I+       + S+YDAI VLLTP
Sbjct: 173 NVDILNSGFSVVAAAATGNEILKESFMDLQIDELIIQIMKSHGRGRVHSIYDAICVLLTP 232

Query: 292 DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVA 351
           DD++VVASQVYGYARRFAK GIA ALV SL  GL SPSL+SASIALKAVAVNDEICKS+A
Sbjct: 233 DDNRVVASQVYGYARRFAKAGIAGALVESLGEGLRSPSLVSASIALKAVAVNDEICKSIA 292

Query: 352 ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF 411
           E+GGIDA+LRCIDDSG QGNKTVAR CCSLLSKLAGSD+NKS I+E GGMD+LI +SARF
Sbjct: 293 ESGGIDAVLRCIDDSGEQGNKTVARACCSLLSKLAGSDANKSTIVEKGGMDRLIKLSARF 352

Query: 412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN 471
           SDD SVLQEVM I  VLSLRSP+NAARA+EAG+GDLAIQAM KFP AQQ+QR+SC MIRN
Sbjct: 353 SDDPSVLQEVMPIFCVLSLRSPDNAARAVEAGAGDLAIQAMQKFPAAQQMQRNSCLMIRN 412

Query: 472 LVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLGLDDYN 519
           LV RN ENR LLLSNG+EK+IR+AKENHE CKDAA DALRDLGL DYN
Sbjct: 413 LVVRNQENRTLLLSNGIEKIIRKAKENHESCKDAANDALRDLGL-DYN 459

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105507|ref|XP_002313836.1| predicted protein [Populus trichocarpa] gi|222850244|gb|EEE87791.1| predicted protein [Populus trichocarpa]

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/466 (71%), Positives = 387/466 (83%), Gaps = 15/466 (3%)

Query: 55  MGPP-KTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGES 113
           MGPP K  RTISQEAFDE+VKEN+EDLGM+PTEAL+DAIQTL+LQGVDLSGIV CVPGE 
Sbjct: 1   MGPPSKNARTISQEAFDELVKENIEDLGMDPTEALEDAIQTLTLQGVDLSGIVTCVPGEG 60

Query: 114 SLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNG 173
           ++++NP+I+ LERL++L       F +   NEM GLFD+L  L  G EGS N A+  +NG
Sbjct: 61  NVRENPVIKCLERLEELG------FDNNGSNEMAGLFDQLAGLFSGVEGSGNVAIGVRNG 114

Query: 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDP 233
           GVELVCSIC  +  GS++VL S L+T+ALL+HDVQSTETFR+  GPK++V+IL DG+E  
Sbjct: 115 GVELVCSICSNIPIGSEKVLVSALETLALLIHDVQSTETFRSSDGPKMVVDILKDGSESL 174

Query: 234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD 293
           +ILNSGFAVVAA+AT NEVVKE +MELKIDELILE L+RQ   +I+ LYD+IRVLLTPDD
Sbjct: 175 DILNSGFAVVAAAATSNEVVKELFMELKIDELILEALNRQSKGNIRGLYDSIRVLLTPDD 234

Query: 294 DQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAEN 353
           ++VVASQVYGYARRFAKIGIARALV SL AGL+SPSL+SASIALKAVAVNDEICKS+ E+
Sbjct: 235 NRVVASQVYGYARRFAKIGIARALVESLRAGLTSPSLVSASIALKAVAVNDEICKSITES 294

Query: 354 GGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSD 413
           GGIDA+L+ IDDSG QGNK VA+ CCSLLSKLAG DSNKSAI+E  GM+KLI +SARFSD
Sbjct: 295 GGIDAILKFIDDSGEQGNKIVAKTCCSLLSKLAGCDSNKSAIVEKKGMNKLIQLSARFSD 354

Query: 414 DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473
           D  VLQEVMS+ TVL LRSP+NAARAMEAG+GDLAIQ M K    QQLQR+SC MIRNLV
Sbjct: 355 DPPVLQEVMSVFTVLCLRSPDNAARAMEAGAGDLAIQVMEKLSTVQQLQRNSCLMIRNLV 414

Query: 474 ARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLGLDDYN 519
            RNPENR        +K IR+AK NHE CKDAATDALRDLGLD+YN
Sbjct: 415 VRNPENR--------QKFIRRAKVNHETCKDAATDALRDLGLDNYN 452

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561675|ref|XP_002521847.1| Armadillo repeat-containing protein, putative [Ricinus communis] gi|223538885|gb|EEF40483.1| Armadillo repeat-containing protein, putative [Ricinus communis]

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/492 (68%), Positives = 400/492 (81%), Gaps = 18/492 (3%)

Query: 44  FFVRTDLTAHEMGPP-KTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDL 102
            + R  L   EMGPP K  RTISQEAFDE+VKENME+LGM+PTEAL+DA+QTL+LQGVDL
Sbjct: 229 IYRRRRLAQREMGPPNKNARTISQEAFDELVKENMEELGMDPTEALEDAMQTLNLQGVDL 288

Query: 103 SGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDED-LNEMMGLFDKLIELCGGNE 161
           SGIV CVPGES+  DNP++Q L RLK++D  S D  S  D ++E+  LFDKLI L    E
Sbjct: 289 SGIVTCVPGESNASDNPVMQCLGRLKEIDSISIDPISSYDYISEIGELFDKLIGL--STE 346

Query: 162 GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221
            S N A+  KNGG++LVCSIC K+    K VL   LK +AL ++DVQSTETFR+ GG  +
Sbjct: 347 ASANVAIGVKNGGIQLVCSICSKIPNQFKAVLVVGLKALALFLYDVQSTETFRSSGGATI 406

Query: 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281
           L  IL +GNE+ +IL+SGF+VVAA+ATGNE++KES+MELK+DELIL+ L+ Q   SIQ+L
Sbjct: 407 LAGILKNGNENIDILDSGFSVVAAAATGNEILKESFMELKVDELILQALNGQHKGSIQNL 466

Query: 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA 341
           YDAIRVLLTPDDD++VASQVYGYARRFAKIGIA ALV SLH GL+SPSL+SA IALKAVA
Sbjct: 467 YDAIRVLLTPDDDRIVASQVYGYARRFAKIGIAGALVESLHGGLTSPSLVSACIALKAVA 526

Query: 342 VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGM 401
           VNDEICKS+AE GGIDA+L+CIDDSG QGNKTVAR CCSLLSKLAGSDS KS I+E GGM
Sbjct: 527 VNDEICKSIAERGGIDAILQCIDDSGEQGNKTVARTCCSLLSKLAGSDSIKSVIVEKGGM 586

Query: 402 DKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQL 461
           D+LI ++ARFSDD SVLQEVM++ITVL LRSP+NA+ A+EAG+GDLA+QAM KFP+A QL
Sbjct: 587 DRLIRLAARFSDDPSVLQEVMAVITVLCLRSPDNASCAIEAGAGDLAVQAMQKFPSAPQL 646

Query: 462 QRSSCFMIRNLVARNPENRK--------------LLLSNGVEKLIRQAKENHEICKDAAT 507
           QR+SCFMIRNLV RNPENR+              LLLS+G+E +IR+AK +HE CKDAAT
Sbjct: 647 QRNSCFMIRNLVVRNPENRQVSFFPCTNNIYSGTLLLSHGIENIIRKAKASHETCKDAAT 706

Query: 508 DALRDLGLDDYN 519
           DALRDLGLD+YN
Sbjct: 707 DALRDLGLDNYN 718

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438432|ref|XP_004136992.1| PREDICTED: armadillo repeat-containing protein 6-like [Cucumis sativus]

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/464 (70%), Positives = 398/464 (85%)

Query: 55  MGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS 114
           MGPPKT+RTISQEAFDEVV+EN+EDLGM+PTEALQDAI+TL+LQGVDLSGIV+CVPGE S
Sbjct: 1   MGPPKTLRTISQEAFDEVVRENVEDLGMDPTEALQDAIETLTLQGVDLSGIVRCVPGEGS 60

Query: 115 LKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGG 174
            +DNPLIQSLERLKQLD +SKDK SD+ ++E++ LFD++ +LCG  + S NA++A +NGG
Sbjct: 61  ARDNPLIQSLERLKQLDGDSKDKISDQFVDEIVVLFDRISDLCGSTQESGNASIALRNGG 120

Query: 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPE 234
           +EL+CS+CYK+    +  + S LKTM LL+ D+ STE FR   GP+++++IL  G ++  
Sbjct: 121 LELLCSLCYKIPSDCEPAVVSSLKTMVLLLQDLHSTEIFRNSNGPRIVMDILNSGKQNVN 180

Query: 235 ILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD 294
           IL  GFAVVAA+AT NEVVKE +ME+ IDELIL+ LS  R D I SLYDAIRVLLT DD 
Sbjct: 181 ILYGGFAVVAAAATANEVVKEVFMEMNIDELILQTLSTYRGDCINSLYDAIRVLLTADDH 240

Query: 295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG 354
           +VVASQVYGYARRFAKIGIA ALV SLH GL+S  L+SA IAL+AV+VNDEICKS+AENG
Sbjct: 241 RVVASQVYGYARRFAKIGIANALVDSLHEGLNSSGLVSACIALRAVSVNDEICKSIAENG 300

Query: 355 GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD 414
           GIDA+LRCIDDSG QGNK VA++CCSLLSKLAGSD+NKSAIIE  G++KLI +S+RFSDD
Sbjct: 301 GIDAVLRCIDDSGDQGNKMVAKVCCSLLSKLAGSDANKSAIIEKKGLNKLIKLSSRFSDD 360

Query: 415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474
            SVLQEVM++++VL+LRSPENA +A+EAG+GDLAIQAM KFP+AQQ+QR+SC MIRNLV 
Sbjct: 361 PSVLQEVMAVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVV 420

Query: 475 RNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLGLDDY 518
           RNPENR LLL  G+EK IR+AK+NHE CKDAA+DALRDLGLD+Y
Sbjct: 421 RNPENRALLLKTGIEKYIRKAKQNHESCKDAASDALRDLGLDNY 464

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517545|ref|XP_004165806.1| PREDICTED: armadillo repeat-containing protein 6-like [Cucumis sativus]

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/464 (70%), Positives = 398/464 (85%)

Query: 55  MGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS 114
           MGPPKT+RTISQEAFDEVV+EN+EDLGM+PTEALQDAI+TL+LQGVDLSGIV+CVPGE S
Sbjct: 1   MGPPKTLRTISQEAFDEVVRENVEDLGMDPTEALQDAIETLTLQGVDLSGIVRCVPGEGS 60

Query: 115 LKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGG 174
            +DNPLIQSLERLKQLD +SKDK SD+ ++E++ LFD++ +LCG  + S NA++A +NGG
Sbjct: 61  ARDNPLIQSLERLKQLDGDSKDKISDQFVDEIVVLFDRISDLCGSTQESGNASIALRNGG 120

Query: 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPE 234
           +EL+CS+CYK+    +  + S LKTM LL+ D+ STE FR   GP+++++IL  G ++  
Sbjct: 121 LELLCSLCYKIPSDCEPAVVSSLKTMVLLLQDLHSTEIFRNSNGPRIVMDILNSGKQNVN 180

Query: 235 ILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD 294
           IL  GFAVVAA+AT NEVVKE +ME+ IDELIL+ LS  R D I SLYDAIRVLLT DD 
Sbjct: 181 ILYGGFAVVAAAATANEVVKEVFMEMNIDELILQTLSTYRGDCINSLYDAIRVLLTADDH 240

Query: 295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG 354
           +VVASQVYGYARRFAKIGIA ALV SLH GL+S  L+SA IAL+AV+VNDEICKS+AENG
Sbjct: 241 RVVASQVYGYARRFAKIGIANALVDSLHEGLNSAGLVSACIALRAVSVNDEICKSIAENG 300

Query: 355 GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD 414
           GIDA+LRCIDDSG QGNK VA++CCSLLSKLAGSD+NKSAIIE  G++KLI +S+RFSDD
Sbjct: 301 GIDAVLRCIDDSGDQGNKMVAKVCCSLLSKLAGSDANKSAIIEKKGLNKLIKLSSRFSDD 360

Query: 415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474
            SVLQEVM++++VL+LRSPENA +A+EAG+GDLAIQAM KFP+AQQ+QR+SC MIRNLV 
Sbjct: 361 PSVLQEVMAVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVV 420

Query: 475 RNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLGLDDY 518
           RNPENR LLL  G+EK IR+AK+NHE CKDAA+DALRDLGLD+Y
Sbjct: 421 RNPENRALLLKTGIEKYIRKAKQNHESCKDAASDALRDLGLDNY 464

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074674|gb|ACJ85697.1| unknown [Medicago truncatula] gi|388518985|gb|AFK47554.1| unknown [Medicago truncatula]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 316/470 (67%), Positives = 389/470 (82%), Gaps = 17/470 (3%)

Query: 55  MGPPKTV-RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGES 113
           MG PKT  R +SQEAF+++V EN+ DL M+PTEALQDAIQTL+LQGVDLSGIV  +PGES
Sbjct: 1   MGVPKTTARAVSQEAFNDLVFENINDLEMDPTEALQDAIQTLTLQGVDLSGIVTSLPGES 60

Query: 114 SLKDNPLIQSLERLKQLDLNSKDKFSDED--LNEMMGLFDKLIELCGGNEGSVNAAVATK 171
               NP+I+ LE+LKQ        F +ED  L+E++ +FDKL+ELCGG +G+ NAA+ATK
Sbjct: 61  ----NPVIECLEKLKQ--------FENEDITLDEIVEVFDKLVELCGGEDGNGNAAIATK 108

Query: 172 NGGVELVCSICYKMRC--GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG 229
           NGGVELVC +  K+R   GS+ VL S L  +ALL+HDVQST TF+   GP++++ I+ D 
Sbjct: 109 NGGVELVCGVFEKIRSSDGSRVVLVSGLNALALLLHDVQSTGTFQNSNGPRIIIGIINDN 168

Query: 230 NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL 289
            ++ ++LNS F VVA++ATG+E+VK+S+MELK+DELI+EI+S  +N  IQSLYDAIRVLL
Sbjct: 169 KQNIDVLNSSFRVVASAATGDEIVKDSFMELKVDELIVEIMSVHKNPGIQSLYDAIRVLL 228

Query: 290 TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKS 349
           TPDD++V+ASQVYGYAR+FAKIGI  ALV SLH GLSSP L+SA I LKA AVNDEICKS
Sbjct: 229 TPDDNRVLASQVYGYARKFAKIGITDALVDSLHTGLSSPDLVSACITLKATAVNDEICKS 288

Query: 350 VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA 409
           +AE GGID +L+CIDDSG QGN  VA++CCSLLSKLAGSD+NKSAI+  GGMDKLI +SA
Sbjct: 289 IAEKGGIDVVLKCIDDSGEQGNTDVAKVCCSLLSKLAGSDANKSAIVGKGGMDKLIKLSA 348

Query: 410 RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMI 469
           R++DD +VLQE+MSII+VLSLRSPENAARA+EAG+GDLAIQAM KFP A Q+QR+SC MI
Sbjct: 349 RYADDPTVLQEIMSIISVLSLRSPENAARAIEAGAGDLAIQAMQKFPAAHQMQRNSCLMI 408

Query: 470 RNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLGLDDYN 519
           RNLVARNPENR +LL+NG+EK IR+AK+ H  CK+AATDALRDLGLD YN
Sbjct: 409 RNLVARNPENRTILLNNGIEKHIRKAKQTHANCKEAATDALRDLGLDSYN 458

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521205|ref|XP_003529247.1| PREDICTED: armadillo repeat-containing protein 6 [Glycine max]

 Score =  602 bits (1553), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 309/473 (65%), Positives = 379/473 (80%), Gaps = 19/473 (4%)

Query: 55  MGPP---KTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPG 111
           MGP     T+R+ISQEAF+E+V EN++DLGM+PTEALQDAIQTL+LQGVDLSGIV CVPG
Sbjct: 1   MGPAAKTTTMRSISQEAFEELVNENIDDLGMDPTEALQDAIQTLTLQGVDLSGIVTCVPG 60

Query: 112 ESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGG--NEGSVNAAVA 169
           E+    NP+I+ L+RL+ L+       ++ D N +   F+ L ELC    ++ + N A+A
Sbjct: 61  ET----NPVIECLDRLRHLE-------TEPDQNLIAQAFNTLHELCANPNSDSNSNVAIA 109

Query: 170 TKNGGVELVCSICYK--MRCGSKRV-LDSCLKTMALLVHDVQSTETFRTGGGPKLLVNIL 226
           TKNG VEL CS+C K  +  GS  V L S L  ++ L+HDVQST  F    GP++++  L
Sbjct: 110 TKNGAVELACSLCSKISLAAGSHVVPLVSALNALSSLLHDVQSTGAFHRCDGPRIVMAFL 169

Query: 227 IDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIR 286
           +D   + E+L+SGF VVA++ATG+E+VKE++MELK+DELILEI+S  R+  IQSLYDA+ 
Sbjct: 170 VDNKGNVELLSSGFRVVASAATGDEIVKEAFMELKVDELILEIMSLHRHKGIQSLYDAVC 229

Query: 287 VLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI 346
            LL PDDD+VVASQVYGYAR+FAKIGIA ALV SL AG+SS  LISA I L+AVAVNDEI
Sbjct: 230 ALLMPDDDRVVASQVYGYARKFAKIGIAEALVDSLSAGVSSHDLISACITLRAVAVNDEI 289

Query: 347 CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIV 406
           CKS+AE GGIDALLRCIDDSG QG+K VA++CCSLLSKLAGSD+NKSAI+  GGMDKLI 
Sbjct: 290 CKSIAEKGGIDALLRCIDDSGEQGDKAVAKVCCSLLSKLAGSDANKSAIVGKGGMDKLIK 349

Query: 407 VSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSC 466
           +SARF+DD SVLQE+MSII+VLSLRSP+NAARA+EAG+GDLAIQAM KFP A Q+QR+SC
Sbjct: 350 LSARFADDPSVLQEIMSIISVLSLRSPDNAARAIEAGAGDLAIQAMEKFPAAHQMQRNSC 409

Query: 467 FMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLGLDDYN 519
            MIRNLV RNPENR +LL+NG+EK IR+AK+ H  CKDAATDALRDLGLD+YN
Sbjct: 410 LMIRNLVVRNPENRTILLNNGIEKYIRKAKQTHTNCKDAATDALRDLGLDNYN 462

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858319|emb|CAN81421.1| hypothetical protein VITISV_035941 [Vitis vinifera]

 Score =  582 bits (1501), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 304/453 (67%), Positives = 360/453 (79%), Gaps = 30/453 (6%)

Query: 55  MGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS 114
           MG  K VRTISQ AFDE+V+ENMEDLGM+P EAL+DA+QTL+LQGVDLSGIV CVPG+ S
Sbjct: 1   MGQKKGVRTISQAAFDELVRENMEDLGMDPAEALEDALQTLTLQGVDLSGIVACVPGDGS 60

Query: 115 LKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGG 174
           + DNP+IQSL+RL QLD + +  F      EM+ +FDKL ELC   EGS NAA+AT+NGG
Sbjct: 61  VGDNPVIQSLDRLNQLD-SDRGGF-----GEMVEVFDKLTELCS-IEGSGNAAIATRNGG 113

Query: 175 VELVCSICYKMR--CGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNED 232
           VE+VCS+C K+R  C    VL S L TMA L+HDVQSTETF+  GGPK++V +L D +++
Sbjct: 114 VEVVCSVCSKIRVGCEGDSVLVSGLTTMASLLHDVQSTETFQKIGGPKIVVGVLNDASQN 173

Query: 233 PEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD 292
            +ILNSGF+VVAA+ATGNE++KES+M+L+IDELI++I+       + S+YDAI VLLTPD
Sbjct: 174 VDILNSGFSVVAAAATGNEILKESFMDLQIDELIIQIMKSHGRGRVHSIYDAICVLLTPD 233

Query: 293 DDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE 352
           D++VVASQVYGYARRFAK GIA ALV SL  GL SPSL+SASIALKAVAVNDEICKS+AE
Sbjct: 234 DNRVVASQVYGYARRFAKAGIAGALVESLGEGLRSPSLVSASIALKAVAVNDEICKSIAE 293

Query: 353 NGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS 412
           +GGIDA+LRCIDDSG QGNKTVAR CCSLLSKLAGSD+NKS I+E GGMD+LI +SARFS
Sbjct: 294 SGGIDAVLRCIDDSGEQGNKTVARACCSLLSKLAGSDANKSTIVEKGGMDRLIKLSARFS 353

Query: 413 DDASVLQE---------------------VMSIITVLSLRSPENAARAMEAGSGDLAIQA 451
           DD SVLQE                     VM I  VLSLRSP+NAARA+EAG+GDLAIQA
Sbjct: 354 DDPSVLQEVNHLKVFIQMNVLDHHTAILDVMPIFCVLSLRSPDNAARAVEAGAGDLAIQA 413

Query: 452 MLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL 484
           M KFP AQQ+QR+SC MIRNLV RN ENR +LL
Sbjct: 414 MQKFPAAQQMQRNSCLMIRNLVVRNQENRLVLL 446

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18418335|ref|NP_567944.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|20466738|gb|AAM20686.1| putative protein [Arabidopsis thaliana] gi|111074180|gb|ABH04463.1| At4g33945 [Arabidopsis thaliana] gi|332660898|gb|AEE86298.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 295/462 (63%), Positives = 375/462 (81%), Gaps = 4/462 (0%)

Query: 61  VRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPL 120
           VRTISQEAFD++V+EN+EDLGM+P+EAL+DA+ TL LQGVDL GI+ CVPGESS+KDNP+
Sbjct: 3   VRTISQEAFDDLVRENVEDLGMDPSEALEDALYTLKLQGVDLFGIITCVPGESSVKDNPV 62

Query: 121 IQSLERLKQLDLNSKD-KFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVC 179
           I  L+RLK+ D  S D    DE  +E+  LF  L ELC   E S NAA+ATK+G V+L C
Sbjct: 63  IACLDRLKEFDSVSIDGPLRDEVFDEISSLFKNLNELCSSQE-SGNAAIATKHGAVDLTC 121

Query: 180 SICYKMRCGSK--RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILN 237
           SIC K++  ++  RVL  C K +A+L+ D+QSTE FR   GP ++V++L D + D ++L+
Sbjct: 122 SICSKIKISTRSNRVLVPCFKALAVLIRDIQSTERFRNCTGPNIVVDLLNDSSSDSDLLD 181

Query: 238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV 297
           +GFAVVAA+ATGNEVVK+ +MELKIDELIL++L+R+   +I++LYDAI  LLTPDD +VV
Sbjct: 182 AGFAVVAAAATGNEVVKQLFMELKIDELILQVLNRESKTTIRALYDAICALLTPDDFRVV 241

Query: 298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGID 357
           ASQVYGYAR FAK+GIA AL  +L AG+ S SL+SAS ALKA+AVNDEICKS+AE+GGID
Sbjct: 242 ASQVYGYARTFAKLGIATALTEALQAGIGSDSLVSASTALKAIAVNDEICKSIAESGGID 301

Query: 358 ALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASV 417
            LLRCIDDSG QGNKT A+ CCSLLSKLAGSDSNKS I+E  G+DKLI ++ RFSDD  V
Sbjct: 302 TLLRCIDDSGEQGNKTAAKTCCSLLSKLAGSDSNKSTIVEKQGLDKLITLALRFSDDPLV 361

Query: 418 LQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP 477
           +QEVM II+++ LRSP++AA+A+EAG+GDLA+QAM +FP A Q+QR++C MIRN+  R+ 
Sbjct: 362 IQEVMLIISIICLRSPDHAAKAIEAGAGDLAVQAMKRFPVAAQMQRNACNMIRNIAVRSA 421

Query: 478 ENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLGLDDYN 519
           ENR +LL+NG+EKLIR AK N+E C+ AATDALRDLGLD+YN
Sbjct: 422 ENRTILLANGIEKLIRTAKANNETCRAAATDALRDLGLDNYN 463

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	520
TAIR|locus:505006553	464	AT4G33945 [Arabidopsis thalian	0.880	0.987	0.590	1.3e-139
MGI|MGI:1924063	468	Armc6 "armadillo repeat contai	0.848	0.942	0.259	3.1e-35
FB|FBgn0034315	464	CG5721 [Drosophila melanogaste	0.844	0.946	0.234	6.9e-26
DICTYBASE|DDB_G0288877	757	aarA "beta-catenin related pro	0.290	0.199	0.272	1.9e-05
RGD|1308558	569	Rap1gds1 "RAP1, GTP-GDP dissoc	0.265	0.242	0.304	0.00012
ZFIN|ZDB-GENE-030616-533	1400	ankar "ankyrin and armadillo r	0.313	0.116	0.265	0.00018
TAIR|locus:2103351	928	ARABIDILLO-2 "AT3G60350" [Arab	0.332	0.186	0.255	0.00039
TAIR|locus:2055033	930	ARABIDILLO-1 "AT2G44900" [Arab	0.332	0.186	0.25	0.00039
UNIPROTKB|P52306	607	RAP1GDS1 "Rap1 GTPase-GDP diss	0.267	0.228	0.306	0.00062
UNIPROTKB|Q04173	558	RAP1GDS1 "Rap1 GTPase-GDP diss	0.267	0.249	0.3	0.0007

TAIR|locus:505006553 AT4G33945 [Arabidopsis thaliana (taxid:3702)]

 Score = 1366 (485.9 bits), Expect = 1.3e-139, P = 1.3e-139
 Identities = 273/462 (59%), Positives = 346/462 (74%)

Query:    61 VRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPL 120
             VRTISQEAFD++V+EN+EDLGM+P+EAL+DA+ TL LQGVDL GI+ CVPGESS+KDNP+
Sbjct:     3 VRTISQEAFDDLVRENVEDLGMDPSEALEDALYTLKLQGVDLFGIITCVPGESSVKDNPV 62

Query:   121 IQSLERLKQLDLNSKD-KFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVC 179
             I  L+RLK+ D  S D    DE  +E+  LF  L ELC   E S NAA+ATK+G V+L C
Sbjct:    63 IACLDRLKEFDSVSIDGPLRDEVFDEISSLFKNLNELCSSQE-SGNAAIATKHGAVDLTC 121

Query:   180 SICYKMRCG--SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILN 237
             SIC K++    S RVL  C K +A+L+ D+QSTE FR   GP ++V++L D + D ++L+
Sbjct:   122 SICSKIKISTRSNRVLVPCFKALAVLIRDIQSTERFRNCTGPNIVVDLLNDSSSDSDLLD 181

Query:   238 SGFAVVAASATGNEVVKESYMXXXXXXXXXXXXSRQRNDSIQSLYDAIRVLLTPDDDQVV 297
             +GFAVVAA+ATGNEVVK+ +M            +R+   +I++LYDAI  LLTPDD +VV
Sbjct:   182 AGFAVVAAAATGNEVVKQLFMELKIDELILQVLNRESKTTIRALYDAICALLTPDDFRVV 241

Query:   298 ASQVYGYARRFAKIGIARALVHSLHXXXXXXXXXXXXXXXXXXXVNDEICKSVAENGGID 357
             ASQVYGYAR FAK+GIA AL  +L                    VNDEICKS+AE+GGID
Sbjct:   242 ASQVYGYARTFAKLGIATALTEALQAGIGSDSLVSASTALKAIAVNDEICKSIAESGGID 301

Query:   358 ALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASV 417
              LLRCIDDSG QGNKT A+ CCSLLSKLAGSDSNKS I+E  G+DKLI ++ RFSDD  V
Sbjct:   302 TLLRCIDDSGEQGNKTAAKTCCSLLSKLAGSDSNKSTIVEKQGLDKLITLALRFSDDPLV 361

Query:   418 LQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP 477
             +QEVM II+++ LRSP++AA+A+EAG+GDLA+QAM +FP A Q+QR++C MIRN+  R+ 
Sbjct:   362 IQEVMLIISIICLRSPDHAAKAIEAGAGDLAVQAMKRFPVAAQMQRNACNMIRNIAVRSA 421

Query:   478 ENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLGLDDYN 519
             ENR +LL+NG+EKLIR AK N+E C+ AATDALRDLGLD+YN
Sbjct:   422 ENRTILLANGIEKLIRTAKANNETCRAAATDALRDLGLDNYN 463

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1924063 Armc6 "armadillo repeat containing 6" [Mus musculus (taxid:10090)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 119/459 (25%), Positives = 205/459 (44%)

Query:    62 RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGES--SLKDNP 119
             + I+QE FD  V+EN+E+  M   EA+++A++    QGVDLS IVK +P  S   L++ P
Sbjct:     4 KRITQETFDAAVRENIEEFEMGTEEAIREAVEQFESQGVDLSNIVKTIPKVSLDGLQE-P 62

Query:   120 LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVC 179
                 L+ L  L    ++  +   L E+     +  + C   + S    +A + G   ++ 
Sbjct:    63 THSVLQALNDL----QESLTGSRLQEVSAHLVRFCDQCKQQKAS--RYLAAQKGAYPILL 116

Query:   180 SICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSG 239
             +        ++ +L   L  +A+L  D Q         G  LLV  L     + E+   G
Sbjct:   117 AAWQLAATSNQGLLLQALNALAVLT-DGQPD--LLDAQGLHLLVATLAQNAANTELTCCG 173

Query:   240 FAVVAASATGNEVVKESYMXXXXXXXXXXXXSR--QRNDSIQSLYDAIRVLLTPDDDQVV 297
                V      +E  ++  +            ++  Q  D ++    A+RV+   DD +V 
Sbjct:   174 IRCVRHVCLKHEQNRQDLVKAGVLPLLTAAITQHGQHADVVREACWALRVMTFDDDIRVP 233

Query:   298 ASQVYGYARRFAKIGIA-RALVHSLHXXXXXXXXXXXX-XXXXXXXVNDEICKSVAENGG 355
                 + +A+   +     + L+ +                      V +E C+ V + GG
Sbjct:   234 FGHAHEHAKMIVQENKGLKVLIEAARAFSDNPGVLSELCSTLSRLAVRNEFCQEVIDLGG 293

Query:   356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDA 415
             +  L+  + D     ++ + +   S L  +AG+D  K AI+  GG + ++    R     
Sbjct:   294 LGILVTLLADCN--DHQDLVKQVLSALRAIAGNDDVKDAIVRAGGTESIVAAMTRHLASP 351

Query:   416 SVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475
              V ++  + + VL+LR P+N+   +E G    A+QAM   P    +Q+ +C +IRNLV+R
Sbjct:   352 QVCEQSCAALCVLALRKPDNSRVIIEGGGALAALQAMKAHPQEAGVQKQACMLIRNLVSR 411

Query:   476 NPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLG 514
             +    K +L  G E+LI QA+  H  C+D A  ALRDLG
Sbjct:   412 SQVFSKPILDLGAEELILQARAAHPDCEDVAKAALRDLG 450

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0034315 CG5721 [Drosophila melanogaster (taxid:7227)]

 Score = 311 (114.5 bits), Expect = 6.9e-26, P = 6.9e-26
 Identities = 107/457 (23%), Positives = 211/457 (46%)

Query:    62 RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI 121
             + ISQ+ FD+VVKEN+ +  M P+EA ++ I+    QG++L+ I+K +   +     P+I
Sbjct:     3 KVISQDTFDDVVKENVVEFSMTPSEAKEETIKQFEAQGINLANIIKDL-SVNPQTGQPVI 61

Query:   122 -QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCS 180
              ++++++K+  +  K + + E L E +   D   E C   +   +  +A KNG  + + +
Sbjct:    62 NETVDKIKE-HIGQKLEETTE-LLEQLATLDA--E-C--KKSLAHRVLAGKNGAHDALIT 114

Query:   181 ICYKMRCG---SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILN 237
             +  +       ++ VL   L+ +  L H  +  + F       +++ +L    E  E+  
Sbjct:   115 LLEETLSAESPNESVLKKSLEAINSLTH--KQPDLF-DAEAMAVVLKLLALKVESEEVTL 171

Query:   238 SGFAVVAASATGNEVVKESYMXXXXXXXXXXXXSRQRNDSIQSLYDAIRVLLTPDDDQVV 297
                  +  +   +E+ +++ M             + ++  ++ L    R L+  DD +V 
Sbjct:   172 LTLQWLQKACIMHEMNRQNIMNTSALKLMKPLLGKGKDRLVRELTAVFRFLVLDDDIRVE 231

Query:   298 ASQVYGYARRFAKIGIARALVHSLHXXXXXXXXXXXXXXXXXXXVNDEICKSVAENGGID 357
                 + +AR+ A   +   LV  L                    V  E+C ++ E GG+ 
Sbjct:   232 FGCAHEHARQIAG-EVLITLVELLPAYQDPNVLADLLLTIGTLAVRQELCTAIDEAGGLK 290

Query:   358 ALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASV 417
             ++   I  S L   + + R    LL  LAG DS KS I++ G    +  +      + ++
Sbjct:   291 SVFE-IMSSNLDEVR-LNREALKLLRALAGQDSVKSHIVQQGVAPIIKQLLETHQSNENI 348

Query:   418 LQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP 477
             +   ++ +T L+LR  E++A   + G  ++ ++A+   P  + +QR+  + IRN+V+R+ 
Sbjct:   349 VAAALACVTTLTLRVQEHSAAFFDTGIAEVIVEALRAHPKHKIVQRNGAWAIRNMVSRSR 408

Query:   478 ENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLG 514
                +  +S GVE L+  A + H   +     ALRDLG
Sbjct:   409 NQCETWISFGVEDLLNMAMKEHPSVEQDIKAALRDLG 445

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0288877 aarA "beta-catenin related protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 135 (52.6 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 43/158 (27%), Positives = 71/158 (44%)

Query:   343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMD 402
             ND    SV E GGI  +L+ + +  +  N  V      +L  LA +D ++S +   GG+ 
Sbjct:   496 NDNYL-SVVEQGGIQLILQAMKNHMM--NPGVQYNTSFVLRNLARNDVSESRVAIEGGIQ 552

Query:   403 KLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQ 462
              +        +   +  +    +  L          A E G G L ++AM  F +   LQ
Sbjct:   553 SIATAMKNHPNHIGIQTQGCGALRNLGCNDSNKVLSAKEGGIG-LILRAMRSFSSHPDLQ 611

Query:   463 RSSCFMIRNLVARNPENRKLLL-SNGVEKLIRQAKENH 499
              + C  +RNL ARN +N+ ++   NG++ L+  A  NH
Sbjct:   612 LNGCGALRNL-ARNEDNKNMISRQNGIQ-LVLGAMSNH 647

GO:0006928 "cellular component movement" evidence=IGI

GO:0005911 "cell-cell junction" evidence=TAS

GO:0005813 "centrosome" evidence=TAS

GO:0045180 "basal cortex" evidence=IDA

GO:0036360 "sorocarp stalk morphogenesis" evidence=IMP

GO:0034613 "cellular protein localization" evidence=IMP

GO:0003382 "epithelial cell morphogenesis" evidence=IMP

GO:0030054 "cell junction" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0061245 "establishment or maintenance of bipolar cell polarity" evidence=IMP

GO:0051645 "Golgi localization" evidence=IMP

GO:0051642 "centrosome localization" evidence=IMP

GO:0051495 "positive regulation of cytoskeleton organization" evidence=IMP

GO:0045294 "alpha-catenin binding" evidence=IPI

GO:0031150 "sorocarp stalk development" evidence=IMP

GO:0009306 "protein secretion" evidence=IMP

RGD|1308558 Rap1gds1 "RAP1, GTP-GDP dissociation stimulator 1" [Rattus norvegicus (taxid:10116)]

 Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
 Identities = 46/151 (30%), Positives = 77/151 (50%)

Query:   381 LLSKLAGSDSNKSAIIENGGMDKLI-VVSARFS----DDASVLQEVMSIITVLSLRSPEN 435
             +L+ LA +D+ K  ++E G ++ L+ +V  +      DD + L+    ++ VL L   E+
Sbjct:   209 VLAPLAENDAIKLQLVEAGLVECLLEIVQQKVDSTKEDDLAELKTASDLM-VLLLLGDES 267

Query:   436 AARAMEAGSGDLAIQAMLKFP-NAQQLQRSSCFMIRNLVARNPENRKLLLSNG-VEKLI- 492
               +  E G G +  + +   P N+QQLQ +    I N  ARN  N   ++ NG VEKL+ 
Sbjct:   268 MQKLFEGGKGSVFQRVLSWIPSNSQQLQLAGALAIANF-ARNDGNCIHMVDNGIVEKLMD 326

Query:   493 ---RQAKENHEICKDAATDALRDLGLDDYNK 520
                R  ++ +   + AA  ALR+L +   NK
Sbjct:   327 LLDRHVEDGNVTVQHAALSALRNLAIPVVNK 357

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0014829 "vascular smooth muscle contraction" evidence=IMP

GO:0031034 "myosin filament assembly" evidence=IMP

GO:0032321 "positive regulation of Rho GTPase activity" evidence=IMP

ZFIN|ZDB-GENE-030616-533 ankar "ankyrin and armadillo repeat containing" [Danio rerio (taxid:7955)]

 Score = 129 (50.5 bits), Expect = 0.00018, P = 0.00018
 Identities = 46/173 (26%), Positives = 79/173 (45%)

Query:   343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGM 401
             N ++C+ +  +G +  L++ +    +   +  +R C  +L+ LA  S  ++S I + GG+
Sbjct:   771 NSQVCEELVHHGAVPILIKLLS---VHQPELDSR-CAVILADLAAHSKQHQSLIADLGGV 826

Query:   402 DKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQL 461
                +VV+   SD   VL   +  I  L +RSP N      AG     IQ +    ++  L
Sbjct:   827 --ALVVNLLTSDLQDVLVNGVRCIRTLCVRSPHNQTAVAHAGGVPHLIQILAV--DSDTL 882

Query:   462 QRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEIC-KDAATDALRDL 513
             Q  +C  +  L   + EN+ L+   G    + QA  + +I  K  A  AL  L
Sbjct:   883 QEEACLALAELSRGHRENQALICEAGAVGALVQALRHRKISVKVKAASALESL 935

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2103351 ARABIDILLO-2 "AT3G60350" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 0.00039, P = 0.00039
 Identities = 47/184 (25%), Positives = 81/184 (44%)

Query:   342 VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGM 401
             VN ++ K+VAE GGI  L     D     N+ VA      L  L+  + +K+AI + GG+
Sbjct:   458 VNAKVAKAVAEEGGISVLA----DLAKSMNRLVAEEAAGGLWNLSVGEEHKNAIAQAGGV 513

Query:   402 DKLIVVSARFSDDAS-VLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ 460
             + L+ +  R+      VL+     +   +L + +  +  +    G  A+  + +    + 
Sbjct:   514 NALVDLIFRWPHGCDGVLERAAGALA--NLAADDKCSMEVARAGGVHALVMLARNCKYEG 571

Query:   461 LQRSSCFMIRNLVAR---NPENRKLLLSNG-VEKLIRQAKENHEICKDAATDALRDLGLD 516
              Q  +   + NL A    N  N  +    G +E L++  +  HE  K  A  AL +L  D
Sbjct:   572 AQEQAARALANLAAHGDSNGNNAAVGQEAGALEALVQLTQSPHEGVKQEAAGALWNLAFD 631

Query:   517 DYNK 520
             D N+
Sbjct:   632 DKNR 635

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0048527 "lateral root development" evidence=IGI;IMP

TAIR|locus:2055033 ARABIDILLO-1 "AT2G44900" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 0.00039, P = 0.00039
 Identities = 46/184 (25%), Positives = 78/184 (42%)

Query:   342 VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGM 401
             VN  I KSVAE GGI  L           N+ VA      L  L+  + +K+AI + GG+
Sbjct:   467 VNANIAKSVAEEGGIKILAGLAKSM----NRLVAEEAAGGLWNLSVGEEHKNAIAQAGGV 522

Query:   402 DKLIVVSARFSDDAS-VLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ 460
               L+ +  R+ +    VL+     +   +L + +  +  +    G  A+  + +    + 
Sbjct:   523 KALVDLIFRWPNGCDGVLERAAGALA--NLAADDKCSMEVAKAGGVHALVMLARNCKYEG 580

Query:   461 LQRSSCFMIRNLVARNPENRKLLL----SNGVEKLIRQAKENHEICKDAATDALRDLGLD 516
             +Q  +   + NL A    N         +  +E L++  K  HE  +  A  AL +L  D
Sbjct:   581 VQEQAARALANLAAHGDSNNNNAAVGQEAGALEALVQLTKSPHEGVRQEAAGALWNLSFD 640

Query:   517 DYNK 520
             D N+
Sbjct:   641 DKNR 644

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0048527 "lateral root development" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P52306 RAP1GDS1 "Rap1 GTPase-GDP dissociation stimulator 1" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 0.00062, P = 0.00062
 Identities = 46/150 (30%), Positives = 75/150 (50%)

Query:   381 LLSKLAGSDSNKSAIIENGGMDKLI-VVSARF-SDDASVLQEVM--SIITVLSLRSPENA 436
             +L+ LA +D+ K  ++E G ++ L+ +V  +  SD    + E+   S + VL L   E+ 
Sbjct:   247 VLAPLAENDAIKLQLVEAGLVECLLEIVQQKVDSDKEDDITELKTGSDLMVLLLLGDESM 306

Query:   437 ARAMEAGSGDLAIQAMLKFP-NAQQLQRSSCFMIRNLVARNPENRKLLLSNG-VEKLI-- 492
              +  E G G +  + +   P N  QLQ +    I N  ARN  N   ++ NG VEKL+  
Sbjct:   307 QKLFEGGKGSVFQRVLSWIPSNNHQLQLAGALAIANF-ARNDANCIHMVDNGIVEKLMDL 365

Query:   493 --RQAKENHEICKDAATDALRDLGLDDYNK 520
               R  ++ +   + AA  ALR+L +   NK
Sbjct:   366 LDRHVEDGNVTVQHAALSALRNLAIPVINK 395

GO:0005096 "GTPase activator activity" evidence=NAS

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0043547 "positive regulation of GTPase activity" evidence=NAS

UNIPROTKB|Q04173 RAP1GDS1 "Rap1 GTPase-GDP dissociation stimulator 1" [Bos taurus (taxid:9913)]

 Score = 119 (46.9 bits), Expect = 0.00070, P = 0.00070
 Identities = 45/150 (30%), Positives = 76/150 (50%)

Query:   381 LLSKLAGSDSNKSAIIENGGMDKLI-VVSARF-SDDASVLQEVM--SIITVLSLRSPENA 436
             +L+ LA +D+ K  ++E+G ++ L+ +V  +  SD    + E+   S + VL L   E+ 
Sbjct:   198 VLAPLAENDAIKLQLVESGLVECLLEIVQQKVDSDKEEDIAELKTASDLMVLLLLGDESM 257

Query:   437 ARAMEAGSGDLAIQAMLKFP-NAQQLQRSSCFMIRNLVARNPENRKLLLSNG-VEKLI-- 492
              +  E G G++  + +   P N  QLQ +    I N  ARN  N   ++ NG VEKL+  
Sbjct:   258 QKLFEGGKGNVFQRVLSWIPSNNHQLQLAGALAIANF-ARNDGNCIHMVDNGIVEKLMDL 316

Query:   493 --RQAKENHEICKDAATDALRDLGLDDYNK 520
               R  ++ +   + AA   LR+L +   NK
Sbjct:   317 LDRHVEDGNVTVQHAALSCLRNLAIPVVNK 346


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      520       489   0.00082  119 3  11 22  0.41    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  244 KB (2132 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  42.13u 0.10s 42.23t   Elapsed:  00:00:02
  Total cpu time:  42.13u 0.10s 42.23t   Elapsed:  00:00:02
  Start:  Tue May 21 12:24:52 2013   End:  Tue May 21 12:24:54 2013

GO:0005096 "GTPase activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	520
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-05

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 36/124 (29%), Positives = 67/124 (54%), Gaps = 11/124 (8%)

Query: 394 AIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA-- 451
           A+I+ GG+  L  VS   S D +V +E    ++ LS  + +N    +EAG     + A  
Sbjct: 2   AVIQAGGLPAL--VSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAG----GLPALV 55

Query: 452 -MLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL-SNGVEKLIRQAKENHEICKDAATDA 509
            +LK  + +++ +++ + +RNL A   +N+ ++L + GV KL+     ++E  +  AT A
Sbjct: 56  QLLKSED-EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGA 114

Query: 510 LRDL 513
           L +L
Sbjct: 115 LSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	520
KOG4199	461	consensus Uncharacterized conserved protein [Funct	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.95
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.94
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.93
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.89
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.85
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.75
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.74
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.71
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.7
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.7
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.62
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.45
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.36
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.33
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.27
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.25
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.22
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.19
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.13
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.12
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.11
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.87
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.85
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	98.82
PRK09687	280	putative lyase; Provisional	98.8
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.75
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.73
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.71
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.69
PRK09687	280	putative lyase; Provisional	98.69
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.67
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.48
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.48
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.45
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.44
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.43
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.35
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.34
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.34
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.33
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.28
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.22
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.19
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.17
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.14
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.12
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	98.09
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.08
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.02
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.91
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.89
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.77
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.73
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.73
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	97.67
PF05536	543	Neurochondrin: Neurochondrin	97.64
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.63
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.63
PTZ00429	746	beta-adaptin; Provisional	97.58
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.56
PTZ00429	746	beta-adaptin; Provisional	97.55
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.54
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.5
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.47
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.46
PF05536	543	Neurochondrin: Neurochondrin	97.43
PRK14707	2710	hypothetical protein; Provisional	97.41
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.36
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.35
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.26
TIGR02270	410	conserved hypothetical protein. Members are found	97.21
PRK14707	2710	hypothetical protein; Provisional	97.2
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.05
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.99
KOG2973	353	consensus Uncharacterized conserved protein [Funct	96.93
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.82
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.82
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.73
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.56
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.55
COG5369	743	Uncharacterized conserved protein [Function unknow	96.54
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.53
COG5369	743	Uncharacterized conserved protein [Function unknow	96.52
TIGR02270	410	conserved hypothetical protein. Members are found	96.45
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.43
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	96.4
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.4
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.99
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	95.84
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.83
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	95.73
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	95.7
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	95.7
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	95.6
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	95.44
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.41
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.36
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	95.31
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.28
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.16
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.15
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	94.79
KOG1242	569	consensus Protein containing adaptin N-terminal re	94.77
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	94.58
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	94.55
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	94.43
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.37
COG1413	335	FOG: HEAT repeat [Energy production and conversion	94.11
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	94.04
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	93.86
KOG0212	675	consensus Uncharacterized conserved protein [Funct	93.84
PF07814	361	WAPL: Wings apart-like protein regulation of heter	93.78
KOG3036	293	consensus Protein involved in cell differentiation	93.7
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	93.62
KOG1824	1233	consensus TATA-binding protein-interacting protein	93.49
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	93.42
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	93.42
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	93.38
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	93.27
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	93.25
KOG1242	569	consensus Protein containing adaptin N-terminal re	93.07
KOG3036	293	consensus Protein involved in cell differentiation	92.94
KOG2259	823	consensus Uncharacterized conserved protein [Funct	92.91
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	92.76
COG1413	335	FOG: HEAT repeat [Energy production and conversion	92.75
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	92.71
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	92.44
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.33
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	92.16
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	92.07
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	92.0
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	91.75
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	91.7
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	91.58
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	91.22
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	91.1
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	91.01
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	90.53
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	90.53
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	90.21
PF05004	309	IFRD: Interferon-related developmental regulator (	89.93
COG5096	757	Vesicle coat complex, various subunits [Intracellu	89.63
PF07814	361	WAPL: Wings apart-like protein regulation of heter	89.59
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	88.86
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	88.53
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	88.4
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	88.27
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	87.4
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	87.1
PRK09169	2316	hypothetical protein; Validated	86.46
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	86.44
KOG0212	675	consensus Uncharacterized conserved protein [Funct	86.44
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	86.23
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	85.74
KOG1824	1233	consensus TATA-binding protein-interacting protein	85.21
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	85.2
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	85.05
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	84.72
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	84.5
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	84.4
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	83.36
KOG2259	823	consensus Uncharacterized conserved protein [Funct	82.9
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	82.43
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	81.98
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	81.57
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	81.44
KOG0567	289	consensus HEAT repeat-containing protein [General	80.69

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.1e-82  Score=612.17  Aligned_cols=447  Identities=44%  Similarity=0.675  Sum_probs=419.7

Q ss_pred             hhhhhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhcCcccCCccccCCCCCCCCCCcH-HHHHHHHHHHhhcCCCCC
Q 010019           60 TVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPL-IQSLERLKQLDLNSKDKF  138 (520)
Q Consensus        60 ~~~~isQetfDe~V~eni~~~~m~p~eal~~aI~qf~~qgvdls~i~~~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~~  138 (520)
                      ++|+|+|+|||.+|+|||++|.|.|+||.+++|+||+.||++|+||+|+.+.+ .....|. ...+.++++.+.+     
T Consensus         1 ~~K~i~q~tfd~~v~eni~ef~m~peea~~e~I~qfe~qgi~l~nIik~~sv~-~~~~qp~i~~~~~~i~e~i~~-----   74 (461)
T KOG4199|consen    1 MAKVISQDTFDDVVKENVVEFSMTPSEAKEETIKQFEAQGINLANIIKDLSVN-PQTGQPVINETVDKIKEHIGQ-----   74 (461)
T ss_pred             CchhHhHHHHHHHHHHHHHHHhcCccccchHHHHHHHhccCcccccccccCCC-CCCCCccHHHhHHHHHHHHHh-----
Confidence            46899999999999999999999999999999999999999999999998733 2223344 4678888888764     


Q ss_pred             ChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCC
Q 010019          139 SDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGG  218 (520)
Q Consensus       139 ~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~gg  218 (520)
                         -++++.+.+..|...|++  +..+|....++|++|.++-++.....++..++.++|.+|.++++++   ++++++.|
T Consensus        75 ---~~~E~s~ll~~l~d~ck~--~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~q---pdl~da~g  146 (461)
T KOG4199|consen   75 ---KLEETTELLEQLADECKK--SLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQ---PDLFDAEA  146 (461)
T ss_pred             ---hhHHHHHHHHHHHHHHhh--hHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCC---cchhcccc
Confidence               377788888888889997  9999999999999999999887655567788889999999988765   89999999


Q ss_pred             cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcchh
Q 010019          219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVV  297 (520)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~  297 (520)
                      +..++++|....++.++...++.|+...|.+||.||+.||+.++.+++...|..++. .+++++||+++.|.++||.||+
T Consensus       147 ~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~  226 (461)
T KOG4199|consen  147 MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVV  226 (461)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeee
Confidence            999999999888999999999999999999999999999999999999999988755 7999999999999999999999


Q ss_pred             hhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHH
Q 010019          298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARI  377 (520)
Q Consensus       298 ~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~  377 (520)
                      ||++|+|+|.|++.|++..|+++++.+-+++++.+++.+|+.|++++|+|+.|++.||++.|+++|.++.++++..+.+.
T Consensus       227 fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~  306 (461)
T KOG4199|consen  227 FGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKT  306 (461)
T ss_pred             cchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999878777889999


Q ss_pred             HHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCC
Q 010019          378 CCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPN  457 (520)
Q Consensus       378 al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~  457 (520)
                      +|.+|+.|||+|++|..|++.||.+.++.++.+|+++|.|.+++|.+++-||+|.|++...+++.|+....+++|+.||.
T Consensus       307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~  386 (461)
T KOG4199|consen  307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV  386 (461)
T ss_pred             HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcchHHHHHHHHHHcCCCCCCC
Q 010019          458 AQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLGLDDYNK  520 (520)
Q Consensus       458 ~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~~~~a~aALr~Lg~~~~n~  520 (520)
                      ...|||+|||+|||+++|+.+++..++..|++++|+.++.+|++|+++|++|||||||++|||
T Consensus       387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lr  449 (461)
T KOG4199|consen  387 AAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLGCDVYLR  449 (461)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhH
Confidence            999999999999999999999999999999999999999999999999999999999999996

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.5e-40  Score=320.56  Aligned_cols=359  Identities=15%  Similarity=0.179  Sum_probs=308.0

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHH-HHHHHHHHHH
Q 010019          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRV-LDSCLKTMAL  202 (520)
Q Consensus       124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~-~~~al~~La~  202 (520)
                      +-.|...+.|       .|.+.+.++..++|+++++ +..+....++.+|.||.+|++|+....+-.++ .+||++++++
T Consensus        73 lp~lt~~l~S-------dDie~q~qav~kFR~~LS~-E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaS  144 (526)
T COG5064          73 LPQLTQQLFS-------DDIEQQLQAVYKFRKLLSK-ETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIAS  144 (526)
T ss_pred             hHHHHHHHhh-------hHHHHHHHHHHHHHHHhcc-ccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhcc
Confidence            4566667777       7999999999999999887 46667888999999999999997652111122 5688888888


Q ss_pred             hhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh--HHHHH
Q 010019          203 LVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--DSIQS  280 (520)
Q Consensus       203 l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~--~~~~~  280 (520)
                      .+..+  +.-++++|++|.++.+|.  +.+.++.+.++|+|+|++.+++..|+.+.+.|++++|+.++.+...  +++++
T Consensus       145 Gtt~Q--TkvVvd~~AVPlfiqlL~--s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn  220 (526)
T COG5064         145 GTTQQ--TKVVVDAGAVPLFIQLLS--STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRN  220 (526)
T ss_pred             Ccccc--eEEEEeCCchHHHHHHHc--CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHH
Confidence            77665  567789999999999997  4578899999999999999999999999999999999999997644  89999


Q ss_pred             HHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHH
Q 010019          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDAL  359 (520)
Q Consensus       281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~L  359 (520)
                      +.|+|+|||++..+.+..       ..|-+  ++|.|.+|+-+ .|++++.+|||||++|+ +..|..+.+.+.|..+.|
T Consensus       221 ~TWtLSNlcRGknP~P~w-------~~isq--alpiL~KLiys-~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RL  290 (526)
T COG5064         221 ATWTLSNLCRGKNPPPDW-------SNISQ--ALPILAKLIYS-RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRL  290 (526)
T ss_pred             hHHHHHHhhCCCCCCCch-------HHHHH--HHHHHHHHHhh-cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHH
Confidence            999999999998876632       23433  68999999976 47899999999999999 677889999999999999


Q ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHH
Q 010019          360 LRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR  438 (520)
Q Consensus       360 l~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~  438 (520)
                      +++|+..    ++.++.++++.++|+. |+|...+.|+++|+++.+..+|.  +....+++++||+|+|++.++.++.+.
T Consensus       291 vElLs~~----sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs--~~ke~irKEaCWTiSNITAGnteqiqa  364 (526)
T COG5064         291 VELLSHE----SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS--SPKENIRKEACWTISNITAGNTEQIQA  364 (526)
T ss_pred             HHHhcCc----cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhc--ChhhhhhhhhheeecccccCCHHHHHH
Confidence            9999862    2479999999999996 78888899999999999999998  667799999999999999999999999


Q ss_pred             HHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh---ChhhHHHHHhCCHHHHHHHHHHhCcc-hHHHHHHHHHH
Q 010019          439 AMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR---NPENRKLLLSNGVEKLIRQAKENHEI-CKDAATDALRD  512 (520)
Q Consensus       439 i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~---~~e~~~~l~~~G~~~lL~~~~~~h~~-~~~~a~aALr~  512 (520)
                      ++++..+|+|+.+|..  .+..++|+|||||.|.+++   -|++..++++.|+.+.|...+.--+. .-.++-.|+++
T Consensus       365 vid~nliPpLi~lls~--ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~en  440 (526)
T COG5064         365 VIDANLIPPLIHLLSS--AEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIEN  440 (526)
T ss_pred             HHhcccchHHHHHHHH--HHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHH
Confidence            9999999999999976  5889999999999999863   68999999999999999888865543 45666666665

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.5e-39  Score=333.01  Aligned_cols=342  Identities=15%  Similarity=0.187  Sum_probs=298.0

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHH---HHHHHHHH
Q 010019          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRV---LDSCLKTM  200 (520)
Q Consensus       124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~---~~~al~~L  200 (520)
                      ...+.+.+-|       .+.+.+..+...+|++.+.+.+ ++...+..+|.||.+|.+|+..+  ++.+   .+|||+++
T Consensus        68 ~~~~~~~~~S-------~~~~~q~~a~~~~rkllS~~~~-ppi~~vi~~G~v~~lV~~l~~~~--~~~lq~eAAWaLTnI  137 (514)
T KOG0166|consen   68 LELMLAALYS-------DDPQQQLTATQAFRKLLSKERN-PPIDEVIQSGVVPRLVEFLSRDD--NPTLQFEAAWALTNI  137 (514)
T ss_pred             hHHHHHHHhC-------CCHHHHHHHHHHHHHHHccCCC-CCHHHHHHcCcHHHHHHHHccCC--ChhHHHHHHHHHHHH
Confidence            4555666666       6788899999999999987444 66777777899999999998652  3444   56777777


Q ss_pred             HHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHH
Q 010019          201 ALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQ  279 (520)
Q Consensus       201 a~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~  279 (520)
                      ++...++  +..++++|++|.++.+|.  +.+..+.+.|+|+|+|++.+.+..|+.++..|++++|+.++..... ..++
T Consensus       138 Asgtse~--T~~vv~agavp~fi~Ll~--s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lR  213 (514)
T KOG0166|consen  138 ASGTSEQ--TKVVVDAGAVPIFIQLLS--SPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLR  213 (514)
T ss_pred             hcCchhh--ccccccCCchHHHHHHhc--CCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHH
Confidence            7766555  688899999999999997  4578999999999999999999999999999999999999988755 8999


Q ss_pred             HHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHH
Q 010019          280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDA  358 (520)
Q Consensus       280 ~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~  358 (520)
                      ++.|+|+|||.+.++.++|.       .+  ..++|.|..+|.. +|++++.++||||++|+ ..+|..+.+++.|+++.
T Consensus       214 n~tW~LsNlcrgk~P~P~~~-------~v--~~iLp~L~~ll~~-~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~  283 (514)
T KOG0166|consen  214 NATWTLSNLCRGKNPSPPFD-------VV--APILPALLRLLHS-TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPR  283 (514)
T ss_pred             HHHHHHHHHHcCCCCCCcHH-------HH--HHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHH
Confidence            99999999999998877653       22  2479999999985 68999999999999999 78899999999999999


Q ss_pred             HHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHH
Q 010019          359 LLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAA  437 (520)
Q Consensus       359 Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~  437 (520)
                      |+.+|....    ..++.+|+++++|++ |+|...+.+++.|++|.|..+|..+ ....++++|||+|+|++.+++++.+
T Consensus       284 LV~lL~~~~----~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s-~~~~ikkEAcW~iSNItAG~~~qiq  358 (514)
T KOG0166|consen  284 LVDLLGHSS----PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS-PKESIKKEACWTISNITAGNQEQIQ  358 (514)
T ss_pred             HHHHHcCCC----cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC-cchhHHHHHHHHHHHhhcCCHHHHH
Confidence            999999742    268899999999997 7888888999999999999999854 3556999999999999999999999


Q ss_pred             HHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-hChhhHHHHHhCCHHHHHHHHH
Q 010019          438 RAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA-RNPENRKLLLSNGVEKLIRQAK  496 (520)
Q Consensus       438 ~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~-~~~e~~~~l~~~G~~~lL~~~~  496 (520)
                      +++++|.++.|+.+|++  ++..+||+|||||.|+++ +++++..++++.|+.+.+-.++
T Consensus       359 aVida~l~p~Li~~l~~--~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL  416 (514)
T KOG0166|consen  359 AVIDANLIPVLINLLQT--AEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL  416 (514)
T ss_pred             HHHHcccHHHHHHHHhc--cchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc
Confidence            99999999999999976  679999999999999986 6899999999999999888877

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=7e-31  Score=307.93  Aligned_cols=357  Identities=15%  Similarity=0.130  Sum_probs=290.6

Q ss_pred             HHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcc-cccchhHHhcCCcHHHHHH
Q 010019          147 MGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHD-VQSTETFRTGGGPKLLVNI  225 (520)
Q Consensus       147 ~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~-~~~~~~i~~~ggi~~Lv~l  225 (520)
                      ..++..|+.+|..  .......++++|+||.|+.+|++.   ++..+..|...|+.++.. .+.+..+++.|++|.|+++
T Consensus       165 ~~Av~AL~nLs~~--~en~~~~IIeaGaVp~LV~LLsS~---d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~L  239 (2102)
T PLN03200        165 GLLTGALRNLCGS--TDGFWSATLEAGGVDILVKLLSSG---NSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKL  239 (2102)
T ss_pred             HHHHHHHHHHhcC--ccchHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence            4467889999985  555556788999999999999874   778888888888777644 3458899999999999999


Q ss_pred             HhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCC---------hHHHHHHHHHHHHhcCCCCcch
Q 010019          226 LIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR---------NDSIQSLYDAIRVLLTPDDDQV  296 (520)
Q Consensus       226 L~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~---------~~~~~~a~~aL~~Ls~~dd~~v  296 (520)
                      |+++ .+..+++.|+|+|.++|.+++++|+.+++.|++++|++++.+..         ...+++|.|+|.|||.+...-.
T Consensus       240 L~sg-~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll  318 (2102)
T PLN03200        240 LGQG-NEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALI  318 (2102)
T ss_pred             HccC-CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhH
Confidence            9753 45689999999999999999999999999999999999998543         2458899999999998632200


Q ss_pred             hh-hh---------------------------hchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHH
Q 010019          297 VA-SQ---------------------------VYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICK  348 (520)
Q Consensus       297 ~~-~~---------------------------a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~  348 (520)
                      ++ +.                           ..+..+.+....+.+.|+++++......++..+.-+|..|..|..+++
T Consensus       319 ~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~  398 (2102)
T PLN03200        319 LYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSR  398 (2102)
T ss_pred             HHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHH
Confidence            00 00                           001111111224558889988864333356788899999999999999


Q ss_pred             HHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 010019          349 SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITV  427 (520)
Q Consensus       349 ~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~n  427 (520)
                      .+.+.|++++|+.+|...    +.++++.++++|++|+ ++++.++.|++.|++|.|+++|.  ++++.+++.++++|.+
T Consensus       399 ~L~~~daik~LV~LL~~~----~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~--s~s~~iQ~~A~~~L~n  472 (2102)
T PLN03200        399 KLNHAEAKKVLVGLITMA----TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLG--LSSEQQQEYAVALLAI  472 (2102)
T ss_pred             HHHhccchhhhhhhhccC----CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHc--CCCHHHHHHHHHHHHH
Confidence            999999999999999863    2489999999999999 55788999999999999999998  6689999999999999


Q ss_pred             HhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC-cchHHHH
Q 010019          428 LSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH-EICKDAA  506 (520)
Q Consensus       428 La~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a  506 (520)
                      |+.++++++..++++|+++.|+++|..  ++..+|++|+|+|.|++..+++.+..+.+.|+.+.|..++... +.++.+|
T Consensus       473 La~~ndenr~aIieaGaIP~LV~LL~s--~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~A  550 (2102)
T PLN03200        473 LTDEVDESKWAITAAGGIPPLVQLLET--GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIA  550 (2102)
T ss_pred             HHcCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence            999999999999999999999999964  5789999999999999876555666666889998888888766 4788999


Q ss_pred             HHHHHHcCCCC
Q 010019          507 TDALRDLGLDD  517 (520)
Q Consensus       507 ~aALr~Lg~~~  517 (520)
                      ..||.+|-+..
T Consensus       551 a~AL~nLi~~~  561 (2102)
T PLN03200        551 AKTLTKLVRTA  561 (2102)
T ss_pred             HHHHHHHHhcc
Confidence            99999996543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.8e-30  Score=304.55  Aligned_cols=342  Identities=16%  Similarity=0.175  Sum_probs=285.5

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccc-ccchhHHhcCCc
Q 010019          141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGP  219 (520)
Q Consensus       141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~-~~~~~i~~~ggi  219 (520)
                      .+.+.+.++...|+.+|..  +.+.+..+++.|+||.|+++|++.   +...+..|+.+|.++..++ +.+..++++|++
T Consensus       416 ~~~evQ~~Av~aL~~L~~~--~~e~~~aIi~~ggIp~LV~LL~s~---s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaI  490 (2102)
T PLN03200        416 ATADVQEELIRALSSLCCG--KGGLWEALGGREGVQLLISLLGLS---SEQQQEYAVALLAILTDEVDESKWAITAAGGI  490 (2102)
T ss_pred             CCHHHHHHHHHHHHHHhCC--CHHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence            5678899999999999987  899999999999999999999985   6677888888888887554 347889999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchh--
Q 010019          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV--  297 (520)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~--  297 (520)
                      |+|+++|+  +++.+++..|+|+|.|+|...++.|..+.+.|++++|+++|++++...++.|+|+|++|+...+....  
T Consensus       491 P~LV~LL~--s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~  568 (2102)
T PLN03200        491 PPLVQLLE--TGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQ  568 (2102)
T ss_pred             HHHHHHHc--CCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHH
Confidence            99999997  45789999999999999986555566666889999999999998778999999999999754433210  


Q ss_pred             h-------------------hh----hchH--HHHHH-HcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHH
Q 010019          298 A-------------------SQ----VYGY--ARRFA-KIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSV  350 (520)
Q Consensus       298 ~-------------------~~----a~~~--a~~i~-~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i  350 (520)
                      +                   +.    +..+  .+..+ ..||++.|+++|+++ +..+++.|+|+|++++ .+.++++.+
T Consensus       569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~av  647 (2102)
T PLN03200        569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESL  647 (2102)
T ss_pred             HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            0                   00    0000  11111 368999999999976 4679999999999999 678899999


Q ss_pred             HhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010019          351 AENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVL  428 (520)
Q Consensus       351 ~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La--~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nL  428 (520)
                      +..|+|++++.+|+...    .++.++++++|.+|+  ++++++..+++.|++++|+++|+  ..+..+++.++.+|.||
T Consensus       648 v~agaIpPLV~LLss~~----~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~--~~d~~v~e~Al~ALanL  721 (2102)
T PLN03200        648 ATDEIINPCIKLLTNNT----EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAK--SSSIEVAEQAVCALANL  721 (2102)
T ss_pred             HHcCCHHHHHHHHhcCC----hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence            99999999999998742    379999999999998  45567778899999999999998  67899999999999999


Q ss_pred             hcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhCh---hhHHHHHhCCHHHHHHHHHHhC
Q 010019          429 SLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP---ENRKLLLSNGVEKLIRQAKENH  499 (520)
Q Consensus       429 a~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~---e~~~~l~~~G~~~lL~~~~~~h  499 (520)
                      +. +++.+.++...|+++.++++|+.  ++++++++|+|+|.+|+.+.+   .....+...|+...|...+..-
T Consensus       722 l~-~~e~~~ei~~~~~I~~Lv~lLr~--G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~  792 (2102)
T PLN03200        722 LS-DPEVAAEALAEDIILPLTRVLRE--GTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNST  792 (2102)
T ss_pred             Hc-CchHHHHHHhcCcHHHHHHHHHh--CChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcC
Confidence            96 78899999999999999999976  678899999999999987655   3457778889998888877654

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.7e-28  Score=240.33  Aligned_cols=350  Identities=16%  Similarity=0.159  Sum_probs=289.7

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcH
Q 010019          141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPK  220 (520)
Q Consensus       141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~  220 (520)
                      .|+..+..+..++.+++-   +.+++..|++-+++.+|+.-+-+   +.-++++.+.+.|.++..-...+..+...|++.
T Consensus        97 ~d~~Iq~aa~~alGnlAV---n~enk~liv~l~Gl~~Li~qmmt---d~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~  170 (550)
T KOG4224|consen   97 CDKCIQCAAGEALGNLAV---NMENKGLIVSLLGLDLLILQMMT---DGVEVQCNAVGCITNLATFDSNKVKIARSGALE  170 (550)
T ss_pred             cchhhhhhhhhhhcccee---ccCCceEEEeccChHHHHHHhcC---CCcEEEeeehhhhhhhhccccchhhhhhccchh
Confidence            667777888888888887   68889999999998887764433   233455554555555543344578899999999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhh
Q 010019          221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQ  300 (520)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~  300 (520)
                      ++.++-+  +.+..+|..+..+|.++.. ..+||+.++.+|++|.||+++++++.+++..+|.+|++++.+.-.      
T Consensus       171 pltrLak--skdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~------  241 (550)
T KOG4224|consen  171 PLTRLAK--SKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRA------  241 (550)
T ss_pred             hhHhhcc--cchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHH------
Confidence            9999543  5678899999999999864 577999999999999999999998879999999999999986533      


Q ss_pred             hchHHHHHHHcC--CHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHH
Q 010019          301 VYGYARRFAKIG--IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARIC  378 (520)
Q Consensus       301 a~~~a~~i~~~g--~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~a  378 (520)
                          .|.+++.+  .+|.|+++++++. +.++..|..||++|+.+.+....|+++|++|.++++|.+.  +.  .++.+.
T Consensus       242 ----Rk~Laqaep~lv~~Lv~Lmd~~s-~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~--~~--plilas  312 (550)
T KOG4224|consen  242 ----RKILAQAEPKLVPALVDLMDDGS-DKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSP--MG--PLILAS  312 (550)
T ss_pred             ----HHHHHhcccchHHHHHHHHhCCC-hHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCc--ch--hHHHHH
Confidence                34677777  9999999999865 5588889999999999999999999999999999999763  32  577788


Q ss_pred             HHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCC
Q 010019          379 CSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNA  458 (520)
Q Consensus       379 l~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~  458 (520)
                      ..+++|++.++-|...|+++|.+.+||++|+ +.+++++|-+|..+|+||+.....+...+.+.|+++.+.+++...|  
T Consensus       313 VaCIrnisihplNe~lI~dagfl~pLVrlL~-~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p--  389 (550)
T KOG4224|consen  313 VACIRNISIHPLNEVLIADAGFLRPLVRLLR-AGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP--  389 (550)
T ss_pred             HHHHhhcccccCcccceecccchhHHHHHHh-cCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC--
Confidence            8999999999999999999999999999997 4678889999999999999988899999999999999999998754  


Q ss_pred             HHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHcCCCCC
Q 010019          459 QQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRDLGLDDY  518 (520)
Q Consensus       459 ~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~Lg~~~~  518 (520)
                      ..+|.+-..++.-| +.+.+.+..+++.|+.+.|....... .+.++.|++||-||.-+..
T Consensus       390 vsvqseisac~a~L-al~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~  449 (550)
T KOG4224|consen  390 VSVQSEISACIAQL-ALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE  449 (550)
T ss_pred             hhHHHHHHHHHHHH-HhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence            56777777777777 56788899999999998886654332 3567789999999986543

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.1e-26  Score=242.02  Aligned_cols=361  Identities=15%  Similarity=0.177  Sum_probs=289.7

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      .+..++..+.+.      .++..+.+|...|.+.+++  +.+.-..++++|++|.++.++.+.   +..+...|.++|++
T Consensus       110 ~v~~lV~~l~~~------~~~~lq~eAAWaLTnIAsg--tse~T~~vv~agavp~fi~Ll~s~---~~~v~eQavWALgN  178 (514)
T KOG0166|consen  110 VVPRLVEFLSRD------DNPTLQFEAAWALTNIASG--TSEQTKVVVDAGAVPIFIQLLSSP---SADVREQAVWALGN  178 (514)
T ss_pred             cHHHHHHHHccC------CChhHHHHHHHHHHHHhcC--chhhccccccCCchHHHHHHhcCC---cHHHHHHHHHHHhc
Confidence            467888888652      4577899999999999998  888888999999999999999985   77888888888888


Q ss_pred             hhccccc-chhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHH
Q 010019          203 LVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL  281 (520)
Q Consensus       203 l~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a  281 (520)
                      +..|.+. |..+++.|++++|+.++..... -.....+.|+|.|+|......-..-.-..++|.|..++.+.+.+++..|
T Consensus       179 Iagds~~~Rd~vl~~g~l~pLl~~l~~~~~-~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da  257 (514)
T KOG0166|consen  179 IAGDSPDCRDYVLSCGALDPLLRLLNKSDK-LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDA  257 (514)
T ss_pred             cccCChHHHHHHHhhcchHHHHHHhccccc-hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            8877644 6677789999999999975432 4677899999999997542222212224678999999998888999999


Q ss_pred             HHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHH
Q 010019          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALL  360 (520)
Q Consensus       282 ~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll  360 (520)
                      ||+|++|+-+.....         +.+.+.|++|.|+.+|... +..++..|+.+++|++ ++++..+.+++.|+++.|.
T Consensus       258 ~WAlsyLsdg~ne~i---------q~vi~~gvv~~LV~lL~~~-~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~  327 (514)
T KOG0166|consen  258 CWALSYLTDGSNEKI---------QMVIDAGVVPRLVDLLGHS-SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLS  327 (514)
T ss_pred             HHHHHHHhcCChHHH---------HHHHHccchHHHHHHHcCC-CcccccHHHhhccceeeccHHHHHHHHhcChHHHHH
Confidence            999999997665444         3566999999999999864 3557788999999998 6888899999999999999


Q ss_pred             HHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc-CCHHHHHH
Q 010019          361 RCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL-RSPENAAR  438 (520)
Q Consensus       361 ~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~-~~~~~~~~  438 (520)
                      .+|..++.+   .+.++||++|+|++ |+.+..++++++|.+|.|+.+|.  ..+-.++++|+|+++|++. +++++...
T Consensus       328 ~ll~~s~~~---~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~--~~ef~~rKEAawaIsN~ts~g~~~qi~y  402 (514)
T KOG0166|consen  328 NLLSSSPKE---SIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQ--TAEFDIRKEAAWAISNLTSSGTPEQIKY  402 (514)
T ss_pred             HHhccCcch---hHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHh--ccchHHHHHHHHHHHhhcccCCHHHHHH
Confidence            999965443   58999999999996 88899999999999999999999  6689999999999999986 56888999


Q ss_pred             HHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-----C---hhhHHHHHhCCHHHHHHHHHHhCc--chHHHHHH
Q 010019          439 AMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-----N---PENRKLLLSNGVEKLIRQAKENHE--ICKDAATD  508 (520)
Q Consensus       439 i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-----~---~e~~~~l~~~G~~~lL~~~~~~h~--~~~~~a~a  508 (520)
                      +++.|.++++..+| .. .+..+...+--+|.|+-..     .   ......+-+.|..+.|.. ++.|.  +..+.|..
T Consensus       403 Lv~~giI~plcdlL-~~-~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~-LQ~hen~~Iy~~A~~  479 (514)
T KOG0166|consen  403 LVEQGIIKPLCDLL-TC-PDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIEN-LQSHENEEIYKKAYK  479 (514)
T ss_pred             HHHcCCchhhhhcc-cC-CChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHH-hhccccHHHHHHHHH
Confidence            99999999999999 44 4566677888888888421     1   234455667788888855 45664  33444554


Q ss_pred             HHHHc
Q 010019          509 ALRDL  513 (520)
Q Consensus       509 ALr~L  513 (520)
                      .+...
T Consensus       480 II~~y  484 (514)
T KOG0166|consen  480 IIDTY  484 (514)
T ss_pred             HHHHh
Confidence            44443

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=9.5e-27  Score=228.05  Aligned_cols=320  Identities=17%  Similarity=0.178  Sum_probs=276.2

Q ss_pred             cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 010019          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV  253 (520)
Q Consensus       174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n  253 (520)
                      .+.++..++++.   ++.+++.+-.++.++.-..+++.-++.-+|+++|+.-|.  ++..++|+.+..++.++++- ++|
T Consensus        86 s~epvl~llqs~---d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmm--td~vevqcnaVgCitnLaT~-d~n  159 (550)
T KOG4224|consen   86 SNEPVLALLQSC---DKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMM--TDGVEVQCNAVGCITNLATF-DSN  159 (550)
T ss_pred             hhhHHHHHHhCc---chhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhc--CCCcEEEeeehhhhhhhhcc-ccc
Confidence            455677777774   778888777777777655555677788899988876654  45688999999999999987 679


Q ss_pred             HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHH
Q 010019          254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA  333 (520)
Q Consensus       254 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a  333 (520)
                      |..+...|++.+|+++-++.+..+++++..+|.+|+...++|          |.++.+|++|.||.+++++ |.+++..+
T Consensus       160 k~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnR----------r~LV~aG~lpvLVsll~s~-d~dvqyyc  228 (550)
T KOG4224|consen  160 KVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENR----------RVLVHAGGLPVLVSLLKSG-DLDVQYYC  228 (550)
T ss_pred             hhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhh----------hhhhccCCchhhhhhhccC-ChhHHHHH
Confidence            999999999999999777766699999999999999866554          4899999999999999975 68899999


Q ss_pred             HHHHHHhccChhhHHHHHhcC--ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhcc
Q 010019          334 SIALKAVAVNDEICKSVAENG--GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF  411 (520)
Q Consensus       334 ~~aL~~La~~~e~~~~i~~~G--gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~  411 (520)
                      |.+|++++++.-+++.+++.|  .|+.|+++|+++.    ..+...|--+|++|+...+-...|+++|++|.++++|+  
T Consensus       229 ttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s----~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llq--  302 (550)
T KOG4224|consen  229 TTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGS----DKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQ--  302 (550)
T ss_pred             HHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCC----hHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHh--
Confidence            999999999999999999999  9999999999853    37889999999999999999999999999999999998  


Q ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHH
Q 010019          412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKL  491 (520)
Q Consensus       412 ~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~l  491 (520)
                      ++.-...-..+.+++||+. .|-|.--|+++|.+.+++++|.. .++.++|-.|...|+||++-+.-++..|.+.|+.+.
T Consensus       303 s~~~plilasVaCIrnisi-hplNe~lI~dagfl~pLVrlL~~-~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~k  380 (550)
T KOG4224|consen  303 SPMGPLILASVACIRNISI-HPLNEVLIADAGFLRPLVRLLRA-GDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPK  380 (550)
T ss_pred             CcchhHHHHHHHHHhhccc-ccCcccceecccchhHHHHHHhc-CCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHH
Confidence            5555666778899999997 78889999999999999999975 477889999999999998878889999999999999


Q ss_pred             HHHHHHhCc-chHHHHHHHHHHcCCCCC
Q 010019          492 IRQAKENHE-ICKDAATDALRDLGLDDY  518 (520)
Q Consensus       492 L~~~~~~h~-~~~~~a~aALr~Lg~~~~  518 (520)
                      +.+++..-| +.+.+-++++..|..++.
T Consensus       381 l~eL~lD~pvsvqseisac~a~Lal~d~  408 (550)
T KOG4224|consen  381 LIELLLDGPVSVQSEISACIAQLALNDN  408 (550)
T ss_pred             HHHHHhcCChhHHHHHHHHHHHHHhccc
Confidence            999887776 788888999888887653

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.94  E-value=8.8e-26  Score=219.62  Aligned_cols=317  Identities=13%  Similarity=0.168  Sum_probs=256.0

Q ss_pred             cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhc--ccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 010019          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVH--DVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE  251 (520)
Q Consensus       174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~--~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e  251 (520)
                      -+|.|..-|-|   +|-+.+..|..-...++.  ..++.+.++++|.+|.+|++|... +..-++..|.|+|.|+++...
T Consensus        72 elp~lt~~l~S---dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~-q~~mlqfEAaWalTNiaSGtt  147 (526)
T COG5064          72 ELPQLTQQLFS---DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI-QRDMLQFEAAWALTNIASGTT  147 (526)
T ss_pred             hhHHHHHHHhh---hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhc-chhHHHHHHHHHHhhhccCcc
Confidence            45777766655   366666666666655553  335578889999999999999643 344567789999999999877


Q ss_pred             hhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHH-HcCCHHHHHHHHhcCC-ChhH
Q 010019          252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGL-SSPS  329 (520)
Q Consensus       252 ~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~-~~g~l~~Lv~lL~~~~-~~~~  329 (520)
                      .....++++|++|.++.+|.+...++...+.|+|.|++.+..          -+|.++ +.|++++|+.++.+.. +-.+
T Consensus       148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~----------~~RD~vL~~galeplL~ll~ss~~~ism  217 (526)
T COG5064         148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSE----------GCRDYVLQCGALEPLLGLLLSSAIHISM  217 (526)
T ss_pred             cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCch----------hHHHHHHhcCchHHHHHHHHhccchHHH
Confidence            777777899999999999999888999999999999997653          245565 8999999999998754 3478


Q ss_pred             HHHHHHHHHHhcc--Chh-hHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHH
Q 010019          330 LISASIALKAVAV--NDE-ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLI  405 (520)
Q Consensus       330 ~~~a~~aL~~La~--~~e-~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv  405 (520)
                      ++++.|+|+||+.  ++. ....|-.  .+|.|.+++-.    .+++++..||++|+.|+ +..+.-++|++.|..+.|+
T Consensus       218 lRn~TWtLSNlcRGknP~P~w~~isq--alpiL~KLiys----~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLv  291 (526)
T COG5064         218 LRNATWTLSNLCRGKNPPPDWSNISQ--ALPILAKLIYS----RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLV  291 (526)
T ss_pred             HHHhHHHHHHhhCCCCCCCchHHHHH--HHHHHHHHHhh----cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHH
Confidence            8999999999994  322 2222322  36778887764    23589999999999999 4557778899999999999


Q ss_pred             HHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHh
Q 010019          406 VVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLS  485 (520)
Q Consensus       406 ~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~  485 (520)
                      ++|.  +.+..|+..++..+.|+..+++.+.+.++.+|.++.+..+|. ++. ..+.|+|||.|.|+++++.++.+.+++
T Consensus       292 ElLs--~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs-~~k-e~irKEaCWTiSNITAGnteqiqavid  367 (526)
T COG5064         292 ELLS--HESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS-SPK-ENIRKEACWTISNITAGNTEQIQAVID  367 (526)
T ss_pred             HHhc--CccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhc-Chh-hhhhhhhheeecccccCCHHHHHHHHh
Confidence            9998  678899999999999999999999999999999999998885 443 489999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhCc-chHHHHHHHHHHcC
Q 010019          486 NGVEKLIRQAKENHE-ICKDAATDALRDLG  514 (520)
Q Consensus       486 ~G~~~lL~~~~~~h~-~~~~~a~aALr~Lg  514 (520)
                      ....|.|..++.... -.+.+|+=|+.++.
T Consensus       368 ~nliPpLi~lls~ae~k~kKEACWAisNat  397 (526)
T COG5064         368 ANLIPPLIHLLSSAEYKIKKEACWAISNAT  397 (526)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999988887664 45677777777664

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.93  E-value=4.5e-23  Score=200.67  Aligned_cols=320  Identities=16%  Similarity=0.154  Sum_probs=263.3

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhc-ccccchhHHhcCCc
Q 010019          141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVH-DVQSTETFRTGGGP  219 (520)
Q Consensus       141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~-~~~~~~~i~~~ggi  219 (520)
                      ++...+.++|..|-.+..+  -|.    +..+.+...++.+|... ..+.++....+..+..-+- ...+|+.|++.+..
T Consensus       119 ~~~~~l~ksL~al~~lt~~--qpd----l~da~g~~vvv~lL~~~-~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il  191 (461)
T KOG4199|consen  119 PNESVLKKSLEAINSLTHK--QPD----LFDAEAMAVVLKLLALK-VESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL  191 (461)
T ss_pred             CchhHHHHHHHHHHHhhcC--Ccc----hhccccHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence            7788899999999888875  343    45678999999999643 2466777777777744332 22458999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh---------hhHHHHHhcCCHHHHHHHHhcC-ChHHHHHHHHHHHHhc
Q 010019          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNE---------VVKESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLL  289 (520)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e---------~nr~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls  289 (520)
                      +.+...|.++... .+.+..+|+++.+..+++         ..-..|.+.|+...|++++..+ ++..+..+|.+|..|+
T Consensus       192 ~Li~~~l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA  270 (461)
T KOG4199|consen  192 ELILQVLNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA  270 (461)
T ss_pred             HHHHHHHcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence            9999999876554 677788888888765321         1234677888999999999988 4488889999999999


Q ss_pred             CCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCC---hhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhcc
Q 010019          290 TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS---SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS  366 (520)
Q Consensus       290 ~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~---~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~  366 (520)
                      ..++          .++.|++.||+..|+.+|.+..+   .+..+.+|.+|+.|+.+|+++..|++.||.+.++.++..|
T Consensus       271 Vr~E----------~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h  340 (461)
T KOG4199|consen  271 VRDE----------ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH  340 (461)
T ss_pred             HHHH----------HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc
Confidence            8764          36789999999999999998553   3566889999999999999999999999999999999988


Q ss_pred             CCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcH
Q 010019          367 GLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSG  445 (520)
Q Consensus       367 ~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i  445 (520)
                      .++  +.|..++|.++.-|+ ..|++...+++.|+-...+++|++|+....+|+++||.++||+.|+.+++..++..|+-
T Consensus       341 ~~~--p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE  418 (461)
T KOG4199|consen  341 SDD--PLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIE  418 (461)
T ss_pred             CCC--hHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHH
Confidence            765  589999999999999 67999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHH
Q 010019          446 DLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL  484 (520)
Q Consensus       446 ~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~  484 (520)
                      .++..++..|++...   .|-.|||.| ..+.++++.+.
T Consensus       419 ~Li~~A~~~h~tce~---~akaALRDL-Gc~v~lre~wt  453 (461)
T KOG4199|consen  419 KLIRTAKANHETCEA---AAKAALRDL-GCDVYLREEWT  453 (461)
T ss_pred             HHHHHHHhcCccHHH---HHHHHHHhc-CcchhhHHHhc
Confidence            999999998876644   455578887 44566665553

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.89  E-value=1.6e-19  Score=197.87  Aligned_cols=343  Identities=15%  Similarity=0.170  Sum_probs=278.7

Q ss_pred             HHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHH
Q 010019          147 MGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNIL  226 (520)
Q Consensus       147 ~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL  226 (520)
                      .-++.-|-+++.   +......+.+.|.|+.|+++|++.   +.+++..+++.|..++-..+++..+.+.|.++.|+++|
T Consensus       267 rv~~~lLlNLAe---d~~ve~kM~~~~iV~~Lv~~Ldr~---n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl  340 (708)
T PF05804_consen  267 RVAFYLLLNLAE---DPRVELKMVNKGIVSLLVKCLDRE---NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL  340 (708)
T ss_pred             HHHHHHHHHHhc---ChHHHHHHHhcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence            335555666666   778888889999999999999875   67888877788877765556689999999999999999


Q ss_pred             hcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHH
Q 010019          227 IDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYAR  306 (520)
Q Consensus       227 ~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~  306 (520)
                      .  +++.+++..++++|.|++. ++.+|..+++.|++|.|+.+|...  .....+..+|.+||.+|+.|.          
T Consensus       341 ~--s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~----------  405 (708)
T PF05804_consen  341 P--SENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARS----------  405 (708)
T ss_pred             c--CCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHH----------
Confidence            7  4578899999999999965 577899999999999999999864  344568899999999988776          


Q ss_pred             HHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHH------------h---ccC----
Q 010019          307 RFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCI------------D---DSG----  367 (520)
Q Consensus       307 ~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL------------~---~~~----  367 (520)
                      .+...+++|.|+++|-.++++.+..++.+++.||+.+..+.+.+.+.||++.|++..            +   .|.    
T Consensus       406 ~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k  485 (708)
T PF05804_consen  406 MFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLK  485 (708)
T ss_pred             HHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHH
Confidence            667778999999998887766677788899999999999999999999988765432            1   121    


Q ss_pred             ---------------CCCcHHHHHHHHHHHHHhhCCC-chHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 010019          368 ---------------LQGNKTVARICCSLLSKLAGSD-SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR  431 (520)
Q Consensus       368 ---------------~~~~~~v~~~al~aL~~La~~~-~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~  431 (520)
                                     ...+.+...+|+++|+||+..+ +....+-+.+.+|.|...|......++++-+++..+..+|. 
T Consensus       486 ~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-  564 (708)
T PF05804_consen  486 ELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-  564 (708)
T ss_pred             HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-
Confidence                           0113578889999999998655 44444456799999999998766677899999999999995 


Q ss_pred             CHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhC-CHHHHHHHHHHhC-cchHHHHHHH
Q 010019          432 SPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSN-GVEKLIRQAKENH-EICKDAATDA  509 (520)
Q Consensus       432 ~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~-G~~~lL~~~~~~h-~~~~~~a~aA  509 (520)
                      +++.+..+.+.|.++.++++|.....|.+..-+.+++...+. .+++.+..++.. ++...+..+|... +....++-.|
T Consensus       565 d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll-~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~  643 (708)
T PF05804_consen  565 DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLL-FHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNA  643 (708)
T ss_pred             CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHH-cChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHH
Confidence            888889999999999999999999899999999999999995 468888888874 8888887776433 4556666666


Q ss_pred             HHH
Q 010019          510 LRD  512 (520)
Q Consensus       510 Lr~  512 (520)
                      |--
T Consensus       644 Ldi  646 (708)
T PF05804_consen  644 LDI  646 (708)
T ss_pred             HHH
Confidence            643

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.85  E-value=4.8e-18  Score=186.38  Aligned_cols=305  Identities=17%  Similarity=0.173  Sum_probs=252.5

Q ss_pred             HHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 010019          176 ELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKE  255 (520)
Q Consensus       176 p~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~  255 (520)
                      +.+-.++++    +..++..|+..|.++..+......++..|+++.|+++|.+  ++.+++..++..|.+++. ..+||.
T Consensus       253 kk~~~l~~k----QeqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr--~n~ellil~v~fLkkLSi-~~ENK~  325 (708)
T PF05804_consen  253 KKLQTLIRK----QEQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDR--ENEELLILAVTFLKKLSI-FKENKD  325 (708)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHcC-CHHHHH
Confidence            344445544    4566677888889988777667888899999999999985  468899999999999965 567999


Q ss_pred             HHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHH
Q 010019          256 SYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASI  335 (520)
Q Consensus       256 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~  335 (520)
                      .+.+.|+++.|++++.+...+.+..+.++|.||+.+++.|.          .|++.|++|.|+.+|...   .....++.
T Consensus       326 ~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~----------~mV~~GlIPkLv~LL~d~---~~~~val~  392 (708)
T PF05804_consen  326 EMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS----------QMVSLGLIPKLVELLKDP---NFREVALK  392 (708)
T ss_pred             HHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH----------HHHHCCCcHHHHHHhCCC---chHHHHHH
Confidence            99999999999999998777889999999999999988766          889999999999999753   23455788


Q ss_pred             HHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHH-------
Q 010019          336 ALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVS-------  408 (520)
Q Consensus       336 aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL-------  408 (520)
                      .|.+|+.+++++..+...++++.++++|-.+++.   .+..+.++++.|||.++.|.+.|.+.||++.|++..       
T Consensus       393 iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~---~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l  469 (708)
T PF05804_consen  393 ILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEE---EVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL  469 (708)
T ss_pred             HHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCc---cccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH
Confidence            8999999999999999999999999998776543   566778889999999999999898888887766532       


Q ss_pred             --------hccC---------------------CCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCH
Q 010019          409 --------ARFS---------------------DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQ  459 (520)
Q Consensus       409 --------~~~~---------------------~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~  459 (520)
                              ..|.                     ++++..-+++++|+||+..+.+..+.+-+.+.++.+...|..+....
T Consensus       470 LlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~d  549 (708)
T PF05804_consen  470 LLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASED  549 (708)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCCh
Confidence                    1122                     35677788999999999877666666767899999999998887788


Q ss_pred             HHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcchHH
Q 010019          460 QLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKD  504 (520)
Q Consensus       460 ~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~~~  504 (520)
                      .++-+++..+..++ .+++....+.+.|+.+.|..++..+.+..+
T Consensus       550 Dl~LE~Vi~~gtla-~d~~~A~lL~~sgli~~Li~LL~~kqeDdE  593 (708)
T PF05804_consen  550 DLLLEVVILLGTLA-SDPECAPLLAKSGLIPTLIELLNAKQEDDE  593 (708)
T ss_pred             HHHHHHHHHHHHHH-CCHHHHHHHHhCChHHHHHHHHHhhCchHH
Confidence            89999999999884 678888888899999999999988865433

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.75  E-value=1.5e-16  Score=176.97  Aligned_cols=365  Identities=18%  Similarity=0.195  Sum_probs=264.6

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHH
Q 010019          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (520)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La  201 (520)
                      .+.-.|-..+..       .|.++   -.+.|.++..   +++........|-+|.|+++|--.+.++.+....|-.+|-
T Consensus       197 ets~sllsml~t-------~D~ee---~ar~fLemSs---s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALH  263 (2195)
T KOG2122|consen  197 ETSNSLLSMLGT-------DDEEE---MARTFLEMSS---SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALH  263 (2195)
T ss_pred             hhhhHHhhhccc-------CCHHH---HHHHHHHhcc---CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHH
Confidence            334456566554       45544   4566667776   7888888999999999999997665556677777777787


Q ss_pred             HhhcccccchhHHh-cCCcHHHH------H----HHhcCCC------ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHH
Q 010019          202 LLVHDVQSTETFRT-GGGPKLLV------N----ILIDGNE------DPEILNSGFAVVAASATGNEVVKESYMELKIDE  264 (520)
Q Consensus       202 ~l~~~~~~~~~i~~-~ggi~~Lv------~----lL~~~~~------~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~  264 (520)
                      ++.+.++....-+. ...++.|=      +    .|..+..      +..-.+.|+.+|-.+. -+|+.|..+.+.|++.
T Consensus       264 NIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~Lq  342 (2195)
T KOG2122|consen  264 NIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS-FDEEHRHAMNELGGLQ  342 (2195)
T ss_pred             HHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh-ccHHHHHHHHHhhhHH
Confidence            88766532111111 11111111      1    1222211      1223346667776664 4688999999999999


Q ss_pred             HHHHHHhc----CC----h----HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHH
Q 010019          265 LILEILSR----QR----N----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS  332 (520)
Q Consensus       265 ~Lv~lL~~----~~----~----~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~  332 (520)
                      .|-++|.-    |.    +    .+.+.|..+|.||+++|...        .+..-...|.++.||..|.+.+ .+++.-
T Consensus       343 AIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~N--------Ka~LCs~rgfMeavVAQL~s~p-eeL~QV  413 (2195)
T KOG2122|consen  343 AIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVAN--------KATLCSQRGFMEAVVAQLISAP-EELLQV  413 (2195)
T ss_pred             HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccc--------hhhhhhhhhHHHHHHHHHhcCh-HHHHHH
Confidence            98887753    11    1    66677999999999988542        2334446799999999998765 357777


Q ss_pred             HHHHHHHhccC-hh-hHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhc-CCHHHHHHHH
Q 010019          333 ASIALKAVAVN-DE-ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIEN-GGMDKLIVVS  408 (520)
Q Consensus       333 a~~aL~~La~~-~e-~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~-g~l~~Lv~lL  408 (520)
                      .+..|+||+-+ |. .++.+-+.|-|..|..+--....+   .-++..+.+||||+. +.+||..|... |++..||.+|
T Consensus       414 ~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kE---sTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~L  490 (2195)
T KOG2122|consen  414 YASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKE---STLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTL  490 (2195)
T ss_pred             HHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhccc---chHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhc
Confidence            88999999954 33 466677889898888774332222   478999999999985 68999999765 6689999999


Q ss_pred             hcc--CCCHHHHHHHHHHHHHHhc---CCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHH
Q 010019          409 ARF--SDDASVLQEVMSIITVLSL---RSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLL  483 (520)
Q Consensus       409 ~~~--~~~~~v~~~a~~aL~nLa~---~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l  483 (520)
                      ..-  +..-.|.+.|-++|.|.+.   .+.++++.+.+...+..|++.|+.|+  -.+.-++|.+|+||.+|+++.++.+
T Consensus       491 SY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~S--LTiVSNaCGTLWNLSAR~p~DQq~L  568 (2195)
T KOG2122|consen  491 SYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHS--LTIVSNACGTLWNLSARSPEDQQML  568 (2195)
T ss_pred             cccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcc--eEEeecchhhhhhhhcCCHHHHHHH
Confidence            632  2346789999999998753   46688899999999999999999874  5677899999999999999999999


Q ss_pred             HhCCHHHHHHHHHHh-CcchHHHHHHHHHHcC
Q 010019          484 LSNGVEKLIRQAKEN-HEICKDAATDALRDLG  514 (520)
Q Consensus       484 ~~~G~~~lL~~~~~~-h~~~~~~a~aALr~Lg  514 (520)
                      .+.|++.+|+.++.. |...-.=+++|||||=
T Consensus       569 wD~gAv~mLrnLIhSKhkMIa~GSaaALrNLl  600 (2195)
T KOG2122|consen  569 WDDGAVPMLRNLIHSKHKMIAMGSAAALRNLL  600 (2195)
T ss_pred             HhcccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence            999999999887644 4555556789999983

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.74  E-value=1.5e-15  Score=152.66  Aligned_cols=368  Identities=16%  Similarity=0.188  Sum_probs=260.6

Q ss_pred             HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhccc----CcHHHHHHH
Q 010019          121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC----GSKRVLDSC  196 (520)
Q Consensus       121 ~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~----~~~~~~~~a  196 (520)
                      ..+++-|++..+|       .|.+...+..+.|.+.|..  +.++|..+.+.||-++++++|+..+.    .+.++..-+
T Consensus        86 a~~le~Lrq~psS-------~d~ev~~Q~~RaLgNiCyd--n~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~  156 (604)
T KOG4500|consen   86 AEALELLRQTPSS-------PDTEVHEQCFRALGNICYD--NNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVA  156 (604)
T ss_pred             HHHHHHHHhCCCC-------CcccHHHHHHHHHhhhhcc--CchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHH
Confidence            3567888888777       6788889999999999997  99999999999998888888876542    223555555


Q ss_pred             HHHHHHhhccccc-chhHHhcCCcHHHHHHHhcCCCChHHH---------------------------------------
Q 010019          197 LKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEIL---------------------------------------  236 (520)
Q Consensus       197 l~~La~l~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~---------------------------------------  236 (520)
                      ...|.+...++++ +..+++.|.++.|..++.-+.++.+..                                       
T Consensus       157 ~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v  236 (604)
T KOG4500|consen  157 FGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMV  236 (604)
T ss_pred             HHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhh
Confidence            6666666655543 566778888887776665444333222                                       


Q ss_pred             -----HHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh--------HHHHHHHHHHHHhcCCCCcchhhhhhch
Q 010019          237 -----NSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--------DSIQSLYDAIRVLLTPDDDQVVASQVYG  303 (520)
Q Consensus       237 -----~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~--------~~~~~a~~aL~~Ls~~dd~~v~~~~a~~  303 (520)
                           +-.+..+... ..++..|-.+.+.|.++.++++++...+        .....+|....-|.++|+.-        
T Consensus       237 ~~d~~eM~feila~~-aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM--------  307 (604)
T KOG4500|consen  237 REDIDEMIFEILAKA-AENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM--------  307 (604)
T ss_pred             ccchhhHHHHHHHHH-hcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH--------
Confidence                 1222333332 2455566678888999999999887321        34455777777777777642        


Q ss_pred             HHHHHHHcC-CHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhc-cCCCCcHHHHHHHHHH
Q 010019          304 YARRFAKIG-IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD-SGLQGNKTVARICCSL  381 (520)
Q Consensus       304 ~a~~i~~~g-~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~-~~~~~~~~v~~~al~a  381 (520)
                        +.+.+.+ .+.-++..+++ .|...+..+..+|+|++.+|++|..+++.|.+..|+++|.. +..++|.+++.++|++
T Consensus       308 --q~L~~~p~~l~~~~sw~~S-~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsA  384 (604)
T KOG4500|consen  308 --QKLHADPQFLDFLESWFRS-DDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSA  384 (604)
T ss_pred             --HHHhcCcHHHHHHHHHhcC-CchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHH
Confidence              2454444 56777777765 36778888999999999999999999999999999999876 5556788999999999


Q ss_pred             HHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC-cHHHHHHHHHhCCCCHH
Q 010019          382 LSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG-SGDLAIQAMLKFPNAQQ  460 (520)
Q Consensus       382 L~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G-~i~~lv~~L~~~~~~~~  460 (520)
                      |+||+..-.||.++..+|..+.++..++  ...|.|+..-.++|+.+-...+-.+.++...- .++.+++- .+.|+..+
T Consensus       385 LRnl~IPv~nka~~~~aGvteaIL~~lk--~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~W-sks~D~aG  461 (604)
T KOG4500|consen  385 LRNLMIPVSNKAHFAPAGVTEAILLQLK--LASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDW-SKSPDFAG  461 (604)
T ss_pred             HHhccccCCchhhccccchHHHHHHHHH--hcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHh-hhCCccch
Confidence            9999999999999999999999999999  55788999999999988764443444443331 23333332 22344444


Q ss_pred             HHHHHHHHHHHHhh--hChhhHHHHHhC-CHHHHHHHHHHhCcchHHHHHHHHHH
Q 010019          461 LQRSSCFMIRNLVA--RNPENRKLLLSN-GVEKLIRQAKENHEICKDAATDALRD  512 (520)
Q Consensus       461 vqk~A~~aL~nL~~--~~~e~~~~l~~~-G~~~lL~~~~~~h~~~~~~a~aALr~  512 (520)
                      |--+.-+.+.-+..  ...+....+.+. |+...+..+-+.|-.-+.+|--||--
T Consensus       462 v~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~  516 (604)
T KOG4500|consen  462 VAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLS  516 (604)
T ss_pred             hhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHH
Confidence            54454444444432  355666666666 56777877778887777777666643

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.71  E-value=3.8e-15  Score=160.41  Aligned_cols=344  Identities=16%  Similarity=0.181  Sum_probs=252.0

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Q 010019          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (520)
Q Consensus       124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l  203 (520)
                      +..-.+.+.+       .++..+..|...|+.+|..  +..-+..+.+-|+||.||.+|.+.   ..+++..|.++|-+|
T Consensus       235 lpe~i~mL~~-------q~~~~qsnaaaylQHlcfg--d~~ik~~vrqlggI~kLv~Ll~~~---~~evq~~acgaLRNL  302 (717)
T KOG1048|consen  235 LPEVISMLMS-------QDPSVQSNAAAYLQHLCFG--DNKIKSRVRQLGGIPKLVALLDHR---NDEVQRQACGALRNL  302 (717)
T ss_pred             cHHHHHHHhc-------cChhhhHHHHHHHHHHHhh--hHHHHHHHHHhccHHHHHHHhcCC---cHHHHHHHHHHHHhh
Confidence            3344556655       6777888899999999998  888899999999999999999884   778887777887777


Q ss_pred             hccc---ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHH-hcCC-----
Q 010019          204 VHDV---QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEIL-SRQR-----  274 (520)
Q Consensus       204 ~~~~---~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL-~~~~-----  274 (520)
                      ..+.   .++-++.+.+|++.++++|+. ..|.++.+.....+.|+.+ ++..|..++.. ++..|..-+ ..++     
T Consensus       303 vf~~~~~~NKlai~~~~Gv~~l~~~Lr~-t~D~ev~e~iTg~LWNLSS-~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~  379 (717)
T KOG1048|consen  303 VFGKSTDSNKLAIKELNGVPTLVRLLRH-TQDDEVRELITGILWNLSS-NDALKMLIITS-ALSTLTDNVIIPHSGWEEE  379 (717)
T ss_pred             hcccCCcccchhhhhcCChHHHHHHHHh-hcchHHHHHHHHHHhcccc-hhHHHHHHHHH-HHHHHHHhhcccccccCCC
Confidence            6443   347788899999999999984 5678999999999999865 56777777664 344444333 2222     


Q ss_pred             --------hHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH-cCCHHHHHHHHhc-----CCChhHHHHHHHHHHHh
Q 010019          275 --------NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK-IGIARALVHSLHA-----GLSSPSLISASIALKAV  340 (520)
Q Consensus       275 --------~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~-~g~l~~Lv~lL~~-----~~~~~~~~~a~~aL~~L  340 (520)
                              .++..++...|+|++...+         +-.+.+.+ .|.|..|+..++.     ..|...++++.-.|.||
T Consensus       380 ~~~~~~~~~~vf~n~tgcLRNlSs~~~---------eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNL  450 (717)
T KOG1048|consen  380 PAPRKAEDSTVFRNVTGCLRNLSSAGQ---------EAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNL  450 (717)
T ss_pred             CcccccccceeeehhhhhhccccchhH---------HHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhc
Confidence                    2677889999999997432         11235653 5999999999883     22445668888889999


Q ss_pred             cc--Chh----hHHHHH------------------------------------------------hcCChHHHHHHHhcc
Q 010019          341 AV--NDE----ICKSVA------------------------------------------------ENGGIDALLRCIDDS  366 (520)
Q Consensus       341 a~--~~e----~~~~i~------------------------------------------------~~Ggv~~Ll~lL~~~  366 (520)
                      +-  ..|    ..+...                                                ..-.|.+=+.+|...
T Consensus       451 SYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s  530 (717)
T KOG1048|consen  451 SYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALS  530 (717)
T ss_pred             CchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHh
Confidence            73  211    000000                                                001122324445432


Q ss_pred             CCCCcHHHHHHHHHHHHHhh-CC----CchHHHH-HhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 010019          367 GLQGNKTVARICCSLLSKLA-GS----DSNKSAI-IENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM  440 (520)
Q Consensus       367 ~~~~~~~v~~~al~aL~~La-~~----~~~k~~I-v~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~  440 (520)
                      .   +...++.+.++|-||+ +.    ...+..+ .+..|++.|+++|+  .++..|++.++++|.||+. ++.|+..|.
T Consensus       531 ~---n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~--~~~~~vv~s~a~~LrNls~-d~rnk~lig  604 (717)
T KOG1048|consen  531 K---NDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLR--NDDSDVVRSAAGALRNLSR-DIRNKELIG  604 (717)
T ss_pred             c---chHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHh--cCCchHHHHHHHHHhhhcc-Cchhhhhhh
Confidence            2   3478999999999997 32    2445555 78899999999999  8899999999999999995 788877776


Q ss_pred             hcCcHHHHHHHHHhCCC----CHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHh
Q 010019          441 EAGSGDLAIQAMLKFPN----AQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKEN  498 (520)
Q Consensus       441 ~~G~i~~lv~~L~~~~~----~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~  498 (520)
                       .++++-|++.|-.+.+    +.++...+|..|.|++..+.++...+.+.+..+-|+.+.+.
T Consensus       605 -k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s  665 (717)
T KOG1048|consen  605 -KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS  665 (717)
T ss_pred             -cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc
Confidence             7889999999965533    36788899999999998899999999998555455444444

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.70  E-value=5.7e-16  Score=172.44  Aligned_cols=323  Identities=14%  Similarity=0.148  Sum_probs=245.0

Q ss_pred             hhHHHHHHHHHHHHHHhcCC-CChhhHHHHHhcCcHHHHHHHH-------hhcc-----cCcHHHHHHHHHHHHHhhccc
Q 010019          141 EDLNEMMGLFDKLIELCGGN-EGSVNAAVATKNGGVELVCSIC-------YKMR-----CGSKRVLDSCLKTMALLVHDV  207 (520)
Q Consensus       141 ~d~~~~~~al~~L~~l~~~~-~~~~~r~~i~~~Gaip~Lv~lL-------~~~~-----~~~~~~~~~al~~La~l~~~~  207 (520)
                      .+.+....|-+.|+++-..+ +...-|..+.---+...+...|       .+..     ..+...++.|+.+|.-+..|.
T Consensus       250 ~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDE  329 (2195)
T KOG2122|consen  250 EDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDE  329 (2195)
T ss_pred             hhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccH
Confidence            46677778888888877652 1222222222222233233332       2211     122344778999999888887


Q ss_pred             ccchhHHhcCCcHHHHHHHhcCC-------C---ChHHHHHHHHHHHHHhcCChhhHHHHH-hcCCHHHHHHHHhcCChH
Q 010019          208 QSTETFRTGGGPKLLVNILIDGN-------E---DPEILNSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRND  276 (520)
Q Consensus       208 ~~~~~i~~~ggi~~Lv~lL~~~~-------~---~~~v~~~a~~~L~~~~~~~e~nr~~i~-~~g~i~~Lv~lL~~~~~~  276 (520)
                      +-|..+-+-||++.+-+||.-..       .   .-.+..++..+|.|+...+..||..+. ..|.++.+|..|.+..++
T Consensus       330 EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pee  409 (2195)
T KOG2122|consen  330 EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEE  409 (2195)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHH
Confidence            77777778899999888774211       1   235778999999999998899998887 558999999999998889


Q ss_pred             HHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhc-C
Q 010019          277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAEN-G  354 (520)
Q Consensus       277 ~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~-G  354 (520)
                      +++-.+.+|+||+=..|...        .+.+-+.|-+..|+..--.......++..+.|||||+ ..-+||..|..- |
T Consensus       410 L~QV~AsvLRNLSWRAD~nm--------KkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDG  481 (2195)
T KOG2122|consen  410 LLQVYASVLRNLSWRADSNM--------KKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDG  481 (2195)
T ss_pred             HHHHHHHHHHhccccccccH--------HHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccc
Confidence            99999999999997655432        1234477888888776543334457899999999999 567899998874 6


Q ss_pred             ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh----CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019          355 GIDALLRCIDDSGLQGNKTVARICCSLLSKLA----GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (520)
Q Consensus       355 gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La----~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~  430 (520)
                      ++..|+.+|.......--.+++.+=++|+|.+    .+.+.|+.+.+...+..|++.|+  +.+-.|+-++|++||||..
T Consensus       482 ALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LK--S~SLTiVSNaCGTLWNLSA  559 (2195)
T KOG2122|consen  482 ALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLK--SHSLTIVSNACGTLWNLSA  559 (2195)
T ss_pred             hHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhh--hcceEEeecchhhhhhhhc
Confidence            68899999975321212368899999999985    56788888899999999999999  5567899999999999999


Q ss_pred             CCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 010019          431 RSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR  475 (520)
Q Consensus       431 ~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~  475 (520)
                      |+|+-.+.+.+.|+++.+..++  |+++.-+-+-++.+|+||...
T Consensus       560 R~p~DQq~LwD~gAv~mLrnLI--hSKhkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  560 RSPEDQQMLWDDGAVPMLRNLI--HSKHKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             CCHHHHHHHHhcccHHHHHHHH--hhhhhhhhhhHHHHHHHHhcC
Confidence            9999999999999999999998  778888999999999999753

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.70  E-value=4.4e-15  Score=159.97  Aligned_cols=352  Identities=13%  Similarity=0.091  Sum_probs=261.0

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Q 010019          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (520)
Q Consensus       124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l  203 (520)
                      |..|...+.+       ...+.+.+++..||++..+..+..|+..+.+.|+||.++++|+..  .|.++...+..+|.+|
T Consensus       277 I~kLv~Ll~~-------~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t--~D~ev~e~iTg~LWNL  347 (717)
T KOG1048|consen  277 IPKLVALLDH-------RNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHT--QDDEVRELITGILWNL  347 (717)
T ss_pred             HHHHHHHhcC-------CcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhh--cchHHHHHHHHHHhcc
Confidence            5677777776       778899999999999998623446999999999999999999975  3666766655666665


Q ss_pred             hcccccchhHHhcCCcHHHHH-HHhcCC-----------CChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCHHHHHHHH
Q 010019          204 VHDVQSTETFRTGGGPKLLVN-ILIDGN-----------EDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEIL  270 (520)
Q Consensus       204 ~~~~~~~~~i~~~ggi~~Lv~-lL~~~~-----------~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~-g~i~~Lv~lL  270 (520)
                      ...+.-++.++.. +++.|-+ ++.-++           ...++...+..+|+|+.+..++.|+.+.+. |.|..|+..+
T Consensus       348 SS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~i  426 (717)
T KOG1048|consen  348 SSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSI  426 (717)
T ss_pred             cchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHH
Confidence            4332223333333 2333322 222222           135677888999999999889999999976 7899999988


Q ss_pred             hcC------ChHHHHHHHHHHHHhcCCCCcchh-------------------------hhhhchH-----------HHH-
Q 010019          271 SRQ------RNDSIQSLYDAIRVLLTPDDDQVV-------------------------ASQVYGY-----------ARR-  307 (520)
Q Consensus       271 ~~~------~~~~~~~a~~aL~~Ls~~dd~~v~-------------------------~~~a~~~-----------a~~-  307 (520)
                      +..      ++..++++.-.|+||+..=+--+|                         |+.....           .+. 
T Consensus       427 q~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~  506 (717)
T KOG1048|consen  427 QTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERAT  506 (717)
T ss_pred             HHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCccccc
Confidence            732      337788888899999864321111                         1110000           000 


Q ss_pred             -------HHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC-----hhhHHHH-HhcCChHHHHHHHhccCCCCcHHH
Q 010019          308 -------FAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-----DEICKSV-AENGGIDALLRCIDDSGLQGNKTV  374 (520)
Q Consensus       308 -------i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~-----~e~~~~i-~~~Ggv~~Ll~lL~~~~~~~~~~v  374 (520)
                             +...-++.+-+.+|....+..+++.++++|-||+..     ...+..+ .+..|.++|+++|+.. +   ..|
T Consensus       507 ~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~---~~v  582 (717)
T KOG1048|consen  507 APKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-D---SDV  582 (717)
T ss_pred             CCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-C---chH
Confidence                   111123455566676555677899999999999842     2345555 7888999999999973 2   379


Q ss_pred             HHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCC----CHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHH
Q 010019          375 ARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSD----DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQ  450 (520)
Q Consensus       375 ~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~----~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~  450 (520)
                      +..++++|+||+.+..||..|. -++++-|++.|..+..    +.+....+|.+|.|+...++++++.+.+.+|++.|+.
T Consensus       583 v~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~  661 (717)
T KOG1048|consen  583 VRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRL  661 (717)
T ss_pred             HHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHH
Confidence            9999999999999999999998 4899999999976543    3678899999999999999999999999999999997


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHH
Q 010019          451 AMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLI  492 (520)
Q Consensus       451 ~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL  492 (520)
                      +.+. +.++++.+.|+..+..| +...|.+..+-..|.-...
T Consensus       662 I~~s-~~S~k~~kaAs~vL~~l-W~y~eLh~~~kk~g~~q~~  701 (717)
T KOG1048|consen  662 ISKS-QHSPKEFKAASSVLDVL-WQYKELHFKLKKKGFKQQD  701 (717)
T ss_pred             Hhcc-cCCHHHHHHHHHHHHHH-HHHHHHhhhHhhhhhHHHH
Confidence            7665 67889999999999999 7789999998888886443

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.62  E-value=7.9e-14  Score=140.33  Aligned_cols=324  Identities=14%  Similarity=0.084  Sum_probs=238.1

Q ss_pred             HHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccc-ccchhHHhcCCcHHHHHHHhcCCC-----ChHHHHHH
Q 010019          166 AAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPKLLVNILIDGNE-----DPEILNSG  239 (520)
Q Consensus       166 r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~-----~~~v~~~a  239 (520)
                      +...+.+|++..|.+..+|.   +.++..++..+|++++.++ ++|..|.+.||-+.++++|+....     +.+....+
T Consensus        80 ~~~~I~a~~le~Lrq~psS~---d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~  156 (604)
T KOG4500|consen   80 RNYCIDAEALELLRQTPSSP---DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVA  156 (604)
T ss_pred             HHHhhHHHHHHHHHhCCCCC---cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHH
Confidence            33345566777777766663   6677777788888887665 669999999999999999987542     34677788


Q ss_pred             HHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh--HHHHHHHHHHHHhcCCC-CcchhhhhhchHHHHHHHcCCHHH
Q 010019          240 FAVVAASATGNEVVKESYMELKIDELILEILSRQRN--DSIQSLYDAIRVLLTPD-DDQVVASQVYGYARRFAKIGIARA  316 (520)
Q Consensus       240 ~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~--~~~~~a~~aL~~Ls~~d-d~~v~~~~a~~~a~~i~~~g~l~~  316 (520)
                      +..|.|...+++..+...++.|+++.|...+.-+..  +.........++|..-- ++-.+         ..........
T Consensus       157 ~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~---------~~~d~sl~~~  227 (604)
T KOG4500|consen  157 FGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYP---------FCKDCSLVFM  227 (604)
T ss_pred             HHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhh---------hhccchHHHH
Confidence            999999988999999999999999999988876532  22222222222322110 00011         1223455677


Q ss_pred             HHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCC----cHHHHHHHHHHHHHhhCCCchH
Q 010019          317 LVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQG----NKTVARICCSLLSKLAGSDSNK  392 (520)
Q Consensus       317 Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~----~~~v~~~al~aL~~La~~~~~k  392 (520)
                      |++++.+...+++-+..+..|...+.+++.|-.+++.|-+..++++++...+..    ...+...++....-|...|+.-
T Consensus       228 l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM  307 (604)
T KOG4500|consen  228 LLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM  307 (604)
T ss_pred             HHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH
Confidence            888888766666666677788899999999999999999999999998743221    1345566777777777777777


Q ss_pred             HHHHhcC-CHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHh-C--CCCHHHHHHHHHH
Q 010019          393 SAIIENG-GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK-F--PNAQQLQRSSCFM  468 (520)
Q Consensus       393 ~~Iv~~g-~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~-~--~~~~~vqk~A~~a  468 (520)
                      +.+..-+ .+..+++-++  +++...+-.+.-+|.|++ |+++++..+++.|.+..++..+.. |  .++..+|..++.|
T Consensus       308 q~L~~~p~~l~~~~sw~~--S~d~~l~t~g~LaigNfa-R~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsA  384 (604)
T KOG4500|consen  308 QKLHADPQFLDFLESWFR--SDDSNLITMGSLAIGNFA-RRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSA  384 (604)
T ss_pred             HHHhcCcHHHHHHHHHhc--CCchhHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHH
Confidence            7776655 5677777777  788899999999999999 577999999999999999998755 3  3577889999999


Q ss_pred             HHHHhhhChhhHHHHHhCCHHHHHHHHHHhC-cchHHH
Q 010019          469 IRNLVARNPENRKLLLSNGVEKLIRQAKENH-EICKDA  505 (520)
Q Consensus       469 L~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~  505 (520)
                      |||++ --..++..|...|+...+..-++.| |.....
T Consensus       385 LRnl~-IPv~nka~~~~aGvteaIL~~lk~~~ppv~fk  421 (604)
T KOG4500|consen  385 LRNLM-IPVSNKAHFAPAGVTEAILLQLKLASPPVTFK  421 (604)
T ss_pred             HHhcc-ccCCchhhccccchHHHHHHHHHhcCCcchHH
Confidence            99995 4567889999999987776666666 455443

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.45  E-value=1.3e-11  Score=121.28  Aligned_cols=198  Identities=14%  Similarity=0.151  Sum_probs=167.1

Q ss_pred             hHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCC
Q 010019          212 TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP  291 (520)
Q Consensus       212 ~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~  291 (520)
                      .+.+.+.++.|+.+|+. +.++.+++.++.++++.+. .+.+++.+.+.|+++.+..+|..++..+...|.++|.||+.+
T Consensus         7 ~~l~~~~l~~Ll~lL~~-t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~   84 (254)
T PF04826_consen    7 NILEAQELQKLLCLLES-TEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN   84 (254)
T ss_pred             CCcCHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Confidence            34566778899999985 4679999999999999864 678999999999999999999998778888899999999998


Q ss_pred             CCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCC
Q 010019          292 DDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQG  370 (520)
Q Consensus       292 dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~-~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~  370 (520)
                      .+++.          .| + -.++.+++.+.+++ +..++..+..+|.+|++.+++...+.  +.++.++.+|..+.   
T Consensus        85 ~en~~----------~I-k-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~---  147 (254)
T PF04826_consen   85 DENQE----------QI-K-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGS---  147 (254)
T ss_pred             hhhHH----------HH-H-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCC---
Confidence            87643          33 2 25888888777765 67889999999999999888877765  47999999999742   


Q ss_pred             cHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019          371 NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (520)
Q Consensus       371 ~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~  430 (520)
                       ..++..++.+|.||+.++++...++.++++..++.++.+. .+.++...++....||..
T Consensus       148 -~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~-~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  148 -EKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSS-ESKENLLRVLTFFENINE  205 (254)
T ss_pred             -hHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccC-CccHHHHHHHHHHHHHHH
Confidence             3788999999999999999999999999999999999853 367788889999999953

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.36  E-value=2.1e-11  Score=105.15  Aligned_cols=117  Identities=24%  Similarity=0.390  Sum_probs=105.9

Q ss_pred             HHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 010019          349 SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITV  427 (520)
Q Consensus       349 ~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~n  427 (520)
                      .+++.|+++.++++|.+.    +..+...++.+|++++.. ++.+..+++.|+++.++++|.  .+++.+++.++++|++
T Consensus         2 ~~~~~~~i~~l~~~l~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~v~~~a~~~L~~   75 (120)
T cd00020           2 AVIQAGGLPALVSLLSSS----DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK--SEDEEVVKAALWALRN   75 (120)
T ss_pred             hHHHcCChHHHHHHHHcC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence            467899999999999863    248999999999999976 888999999999999999998  5689999999999999


Q ss_pred             HhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019          428 LSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV  473 (520)
Q Consensus       428 La~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~  473 (520)
                      |+...+.....+...|+++.+++.|..  .+..+++.|+|+|.||+
T Consensus        76 l~~~~~~~~~~~~~~g~l~~l~~~l~~--~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          76 LAAGPEDNKLIVLEAGGVPKLVNLLDS--SNEDIQKNATGALSNLA  119 (120)
T ss_pred             HccCcHHHHHHHHHCCChHHHHHHHhc--CCHHHHHHHHHHHHHhh
Confidence            999888888889999999999999965  57899999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.33  E-value=1.4e-10  Score=113.99  Aligned_cols=197  Identities=15%  Similarity=0.080  Sum_probs=159.3

Q ss_pred             HHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHH
Q 010019          257 YMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASI  335 (520)
Q Consensus       257 i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~  335 (520)
                      +++.+-++.|+.+|+...+ .+++.+..++.+.+....++-          .|.+.||++.+..+|.. +++.++..|++
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~----------~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~   76 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQD----------IIRDLGGISLIGSLLND-PNPSVREKALN   76 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHH----------HHHHcCCHHHHHHHcCC-CChHHHHHHHH
Confidence            3566778999999997654 666778999999876443221          44488999999999987 56889999999


Q ss_pred             HHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCH
Q 010019          336 ALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDA  415 (520)
Q Consensus       336 aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~  415 (520)
                      +|.||+.+.+|...|-.  .++.+.+.+..++-  +..++..++++|.+|+..++....+.  +.++.++.+|.  +++.
T Consensus        77 aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~l--ns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~--~G~~  148 (254)
T PF04826_consen   77 ALNNLSVNDENQEQIKM--YIPQVCEETVSSPL--NSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLS--SGSE  148 (254)
T ss_pred             HHHhcCCChhhHHHHHH--HHHHHHHHHhcCCC--CCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHH--cCCh
Confidence            99999999999887754  46666666554432  23899999999999998887777665  47999999999  6788


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019          416 SVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (520)
Q Consensus       416 ~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~  474 (520)
                      .++.+++.+|.||+. +|++.+.++.+++...++.++... .+.++...+.+...|+..
T Consensus       149 ~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~-~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  149 KTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSS-ESKENLLRVLTFFENINE  205 (254)
T ss_pred             HHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccC-CccHHHHHHHHHHHHHHH
Confidence            999999999999996 999999999999999999888654 456677788899999953

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.27  E-value=1.5e-10  Score=99.80  Aligned_cols=116  Identities=23%  Similarity=0.351  Sum_probs=102.4

Q ss_pred             HHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC-hhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010019          307 RFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL  385 (520)
Q Consensus       307 ~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~-~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~L  385 (520)
                      .+++.|+++.|+++|+.. +..++..++++|++++.+ ++.+..+++.|+++.++.+|.+.    +..++..++++|++|
T Consensus         2 ~~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~----~~~v~~~a~~~L~~l   76 (120)
T cd00020           2 AVIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE----DEEVVKAALWALRNL   76 (120)
T ss_pred             hHHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC----CHHHHHHHHHHHHHH
Confidence            467889999999999865 467899999999999965 88999999999999999999863    358999999999999


Q ss_pred             hCCC-chHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019          386 AGSD-SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (520)
Q Consensus       386 a~~~-~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa  429 (520)
                      +.++ ..+..+.+.|+++.++++|.  ..+..+++.++++|.+|+
T Consensus        77 ~~~~~~~~~~~~~~g~l~~l~~~l~--~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          77 AAGPEDNKLIVLEAGGVPKLVNLLD--SSNEDIQKNATGALSNLA  119 (120)
T ss_pred             ccCcHHHHHHHHHCCChHHHHHHHh--cCCHHHHHHHHHHHHHhh
Confidence            9765 56667788999999999998  558999999999999997

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.25  E-value=1.6e-08  Score=109.62  Aligned_cols=340  Identities=12%  Similarity=0.090  Sum_probs=236.1

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHH
Q 010019          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (520)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La  201 (520)
                      .....|...+.+       .++....-++..|++....  +......+.+.+.++.++.++...   +..+...|.++|.
T Consensus        77 ~~~~~L~~gL~h-------~~~~Vr~l~l~~l~~~~~~--~~~~~~~~~~~~l~~~i~~~L~~~---d~~Va~~A~~~L~  144 (503)
T PF10508_consen   77 QYQPFLQRGLTH-------PSPKVRRLALKQLGRIARH--SEGAAQLLVDNELLPLIIQCLRDP---DLSVAKAAIKALK  144 (503)
T ss_pred             HHHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcC--CHHHHHHhcCccHHHHHHHHHcCC---cHHHHHHHHHHHH
Confidence            445666777766       6677777788889888875  666677888999999999999874   7788888999999


Q ss_pred             HhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHH
Q 010019          202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL  281 (520)
Q Consensus       202 ~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a  281 (520)
                      .++........++..++++.|..++..  .+..+...++.++.+++..+++....+.+.|.++.++..|.+.+.-++.++
T Consensus       145 ~l~~~~~~~~~l~~~~~~~~L~~l~~~--~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlna  222 (503)
T PF10508_consen  145 KLASHPEGLEQLFDSNLLSKLKSLMSQ--SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNA  222 (503)
T ss_pred             HHhCCchhHHHHhCcchHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHH
Confidence            888655545567788888999999874  245677788899999999999999999999999999999998433566689


Q ss_pred             HHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC-Ch---hH-HHHHHHHHHHhccChhhHHHHHhcCCh
Q 010019          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SS---PS-LISASIALKAVAVNDEICKSVAENGGI  356 (520)
Q Consensus       282 ~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~-~~---~~-~~~a~~aL~~La~~~e~~~~i~~~Ggv  356 (520)
                      +..|..|+..+..          .+-+.+.|+++.|++.+.... |+   .+ +........+++.....  .+.  ++.
T Consensus       223 lell~~La~~~~g----------~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~--~v~--~~~  288 (503)
T PF10508_consen  223 LELLSELAETPHG----------LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ--EVL--ELY  288 (503)
T ss_pred             HHHHHHHHcChhH----------HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH--HHH--HHH
Confidence            9999999974432          346778999999999998654 33   11 12233455667653211  121  344


Q ss_pred             HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHH-HhcC-CHHHHHHHHhcc--CCCHHHHHHHHHHHHHHhcCC
Q 010019          357 DALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAI-IENG-GMDKLIVVSARF--SDDASVLQEVMSIITVLSLRS  432 (520)
Q Consensus       357 ~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~I-v~~g-~l~~Lv~lL~~~--~~~~~v~~~a~~aL~nLa~~~  432 (520)
                      |.++..+.+..+..++.....|+.+|+.++.+.+++..+ ...| .++.++.....+  +...+++..++.+|.++-...
T Consensus       289 p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~  368 (503)
T PF10508_consen  289 PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSG  368 (503)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcC
Confidence            666655544333345688899999999999999999988 5443 455555555433  345689999999999993221


Q ss_pred             H----HH----HHHHHh-cC--cHH-HHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhC-CHHHHH
Q 010019          433 P----EN----AARAME-AG--SGD-LAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSN-GVEKLI  492 (520)
Q Consensus       433 ~----~~----~~~i~~-~G--~i~-~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~-G~~~lL  492 (520)
                      +    +.    ...+.+ .|  -.. .++.+++.  .=++++..|-..|..++.+ +-....|... |....|
T Consensus       369 ~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~q--PF~elr~a~~~~l~~l~~~-~Wg~~~i~~~~gfie~l  438 (503)
T PF10508_consen  369 TDRQDNDILSITESWYESLSGSPLSNLLMSLLKQ--PFPELRCAAYRLLQALAAQ-PWGQREICSSPGFIEYL  438 (503)
T ss_pred             CCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchHHHHHHHHHHHHHhcC-HHHHHHHHhCccHHhhh
Confidence            1    11    222222 12  233 44444432  2267888888888888765 4444445554 666655

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.22  E-value=7.4e-09  Score=108.30  Aligned_cols=320  Identities=17%  Similarity=0.171  Sum_probs=221.7

Q ss_pred             CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchh-HHhc-----CCcHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 010019          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTET-FRTG-----GGPKLLVNILIDGNEDPEILNSGFAVVAAS  246 (520)
Q Consensus       173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~-i~~~-----ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~  246 (520)
                      ..+..++.+|+..  ...++....|.-+.-++.+.+++.. |.+.     .-..+++++|.+  ++.-++..++..|+.+
T Consensus        53 ~y~~~~l~ll~~~--~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~--~d~~i~~~a~~iLt~l  128 (429)
T cd00256          53 QYVKTFVNLLSQI--DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR--QDQFIVHMSFSILAKL  128 (429)
T ss_pred             HHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC--CchhHHHHHHHHHHHH
Confidence            4566778888764  3556777788888888777655433 3332     345678888863  4667888888888887


Q ss_pred             hcCChhhHHHHHhcCCHHHHHHHHhcCC-hHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC
Q 010019          247 ATGNEVVKESYMELKIDELILEILSRQR-NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL  325 (520)
Q Consensus       247 ~~~~e~nr~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~  325 (520)
                      ......+.......-....|...|++.. ...+.-+...|..|...+..|.          .+.+.+++++|+.+|+...
T Consensus       129 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~----------~f~~~~~v~~L~~~L~~~~  198 (429)
T cd00256         129 ACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRF----------AFVLADGVPTLVKLLSNAT  198 (429)
T ss_pred             HhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHH----------HHHHccCHHHHHHHHhhcc
Confidence            5432221111000012335556666543 3666667788999998887665          6678889999999998755


Q ss_pred             -ChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCC-------chHHHHHh
Q 010019          326 -SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD-------SNKSAIIE  397 (520)
Q Consensus       326 -~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~-------~~k~~Iv~  397 (520)
                       +...+-.++.++|-|+.+++......+.+.|+.++++++....+   ++++-++.+|+||...+       .....+++
T Consensus       199 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KE---KvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~  275 (429)
T cd00256         199 LGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKE---KVIRIVLAIFRNLISKRVDREVKKTAALQMVQ  275 (429)
T ss_pred             ccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhH---HHHHHHHHHHHHHhhcccccchhhhHHHHHHH
Confidence             45677889999999999888888888889999999999987554   89999999999998632       34456777


Q ss_pred             cCCHHHHHHHHhccCCCHHHHHHHHHHHHHH-------hc-------------------CC----HHHHHHHHhcCc--H
Q 010019          398 NGGMDKLIVVSARFSDDASVLQEVMSIITVL-------SL-------------------RS----PENAARAMEAGS--G  445 (520)
Q Consensus       398 ~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nL-------a~-------------------~~----~~~~~~i~~~G~--i  445 (520)
                      .|.++.+-.+..++-.++++.+.--..--.|       +.                   ++    .+|...+-+.+.  +
T Consensus       276 ~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~ll  355 (429)
T cd00256         276 CKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELL  355 (429)
T ss_pred             cChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHH
Confidence            7766656556665556777655432222111       10                   11    157777766653  6


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcchHHHHHHHHHH
Q 010019          446 DLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRD  512 (520)
Q Consensus       446 ~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~~~~a~aALr~  512 (520)
                      ..|+++|.. ++++.+..-||--|..++...|+-+..+-+.|+-..++++| .|+ ..++.+.||.-
T Consensus       356 k~L~~iL~~-s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm-~h~-d~~Vr~eAL~a  419 (429)
T cd00256         356 KILIHLLET-SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLL-NHE-DPNVRYEALLA  419 (429)
T ss_pred             HHHHHHHhc-CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHh-cCC-CHHHHHHHHHH
Confidence            778888854 46788888999999999888899888888899999998888 564 44555555543

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.19  E-value=8.8e-10  Score=112.46  Aligned_cols=230  Identities=17%  Similarity=0.130  Sum_probs=161.7

Q ss_pred             cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhc-------CCcHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 010019          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG-------GGPKLLVNILIDGNEDPEILNSGFAVVAAS  246 (520)
Q Consensus       174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~-------ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~  246 (520)
                      ....++.+|+.. ..+.++....+..+.-++.+.+.+..++..       .-..++++++.+  ++.-++..++..+..+
T Consensus        56 ~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~--~D~~i~~~a~~iLt~L  132 (312)
T PF03224_consen   56 YASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR--NDSFIQLKAAFILTSL  132 (312)
T ss_dssp             ------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S---SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC--CCHHHHHHHHHHHHHH
Confidence            366777888765 236678888999999988877665555432       135677886653  4788999999999998


Q ss_pred             hcCChhhHHHHHhcCCHHHHHHHHhcCCh----HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHh
Q 010019          247 ATGNEVVKESYMELKIDELILEILSRQRN----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH  322 (520)
Q Consensus       247 ~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~----~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~  322 (520)
                      +...+....... .+.++.++..|++...    +.+..+..+|.+|...+..|.          .+.+.|+++.|+.+|+
T Consensus       133 l~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~----------~f~~~~~v~~l~~iL~  201 (312)
T PF03224_consen  133 LSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ----------VFWKSNGVSPLFDILR  201 (312)
T ss_dssp             HTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH----------HHHTHHHHHHHHHHHH
T ss_pred             HHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH----------HHHhcCcHHHHHHHHH
Confidence            765544333222 5678899999987422    556778999999998776554          6668899999999992


Q ss_pred             -----cCC-ChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCc--hHHH
Q 010019          323 -----AGL-SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS--NKSA  394 (520)
Q Consensus       323 -----~~~-~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~--~k~~  394 (520)
                           .++ +..++-.++.++|-|+.+++....+.+.+.|+.|+++++....+   +|++-++++|+||...+.  +...
T Consensus       202 ~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KE---KvvRv~la~l~Nl~~~~~~~~~~~  278 (312)
T PF03224_consen  202 KQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKE---KVVRVSLAILRNLLSKAPKSNIEL  278 (312)
T ss_dssp             ---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SH---HHHHHHHHHHHHTTSSSSTTHHHH
T ss_pred             hhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccc---hHHHHHHHHHHHHHhccHHHHHHH
Confidence                 222 35677889999999999999999999999999999999986543   899999999999997665  8899


Q ss_pred             HHhcCCHHHHHHHHhccCCCHHHHHH
Q 010019          395 IIENGGMDKLIVVSARFSDDASVLQE  420 (520)
Q Consensus       395 Iv~~g~l~~Lv~lL~~~~~~~~v~~~  420 (520)
                      ++..|+++.+-.+..++-+++++.+.
T Consensus       279 mv~~~~l~~l~~L~~rk~~Dedl~ed  304 (312)
T PF03224_consen  279 MVLCGLLKTLQNLSERKWSDEDLTED  304 (312)
T ss_dssp             HHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred             HHHccHHHHHHHHhcCCCCCHHHHHH
Confidence            99988888777777776678887664

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.13  E-value=1.7e-07  Score=101.75  Aligned_cols=348  Identities=11%  Similarity=0.099  Sum_probs=236.0

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccccc-chhHHhcCCc
Q 010019          141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGP  219 (520)
Q Consensus       141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~-~~~i~~~ggi  219 (520)
                      .+.+.+..+.+.|..+.+.   ......  ..+..+.|...|.+.   ++.++..+++.|..+..+... .+.+.+.+.+
T Consensus        50 ~~~e~v~~~~~iL~~~l~~---~~~~~l--~~~~~~~L~~gL~h~---~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~  121 (503)
T PF10508_consen   50 SNREQVELICDILKRLLSA---LSPDSL--LPQYQPFLQRGLTHP---SPKVRRLALKQLGRIARHSEGAAQLLVDNELL  121 (503)
T ss_pred             cChHHHHHHHHHHHHHHhc---cCHHHH--HHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence            4566777777778777764   222222  456778888888874   778888888888887655433 3344567889


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhh
Q 010019          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVAS  299 (520)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~  299 (520)
                      +.++.+|.  .++.++...|..+|..++. ++...+.+...+.+..|..++...++.++-.++.++..++...+      
T Consensus       122 ~~i~~~L~--~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~------  192 (503)
T PF10508_consen  122 PLIIQCLR--DPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSP------  192 (503)
T ss_pred             HHHHHHHc--CCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH------
Confidence            99999996  4678999999999999986 45566778788889999999987555556668888888875432      


Q ss_pred             hhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCC-cHHHH-HH
Q 010019          300 QVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQG-NKTVA-RI  377 (520)
Q Consensus       300 ~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~-~~~v~-~~  377 (520)
                         +....+.+.|.++.++..|.+ .|.-++.+++..|..|+..+...+.+.+.|+++.|.+++....+++ -..+. -.
T Consensus       193 ---~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g  268 (503)
T PF10508_consen  193 ---EAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPG  268 (503)
T ss_pred             ---HHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhh
Confidence               334456678999999999987 5666778999999999999999999999999999999998754332 12333 34


Q ss_pred             HHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhcc--CCCHHHHHHHHHHHHHHhcCCHHHHHHH-HhcC-cHHHHHHHHH
Q 010019          378 CCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF--SDDASVLQEVMSIITVLSLRSPENAARA-MEAG-SGDLAIQAML  453 (520)
Q Consensus       378 al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~--~~~~~v~~~a~~aL~nLa~~~~~~~~~i-~~~G-~i~~lv~~L~  453 (520)
                      .+...++++..+..  .+.  +..|.++..|...  +.++..+..|.-+|..|+. +.+-+..+ ...| ..+.++....
T Consensus       269 ~~~f~g~la~~~~~--~v~--~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~  343 (503)
T PF10508_consen  269 RMKFFGNLARVSPQ--EVL--ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIG  343 (503)
T ss_pred             HHHHHHHHHhcChH--HHH--HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHH
Confidence            44777888764221  122  2344444433321  6789999999999999995 66777666 3333 3445554443


Q ss_pred             hC--CCCHHHHHHHHHHHHHHhhhChh----h----HHHHHhC---CHHH-HHHHHHHh-CcchHHHHHHHHHHcC
Q 010019          454 KF--PNAQQLQRSSCFMIRNLVARNPE----N----RKLLLSN---GVEK-LIRQAKEN-HEICKDAATDALRDLG  514 (520)
Q Consensus       454 ~~--~~~~~vqk~A~~aL~nL~~~~~e----~----~~~l~~~---G~~~-lL~~~~~~-h~~~~~~a~aALr~Lg  514 (520)
                      .+  ++..+++..+--++.++-...++    .    ...+-+.   +-.. ++....+. +|+.+-.|.+-|+.|.
T Consensus       344 ~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~  419 (503)
T PF10508_consen  344 DAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALA  419 (503)
T ss_pred             HHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence            32  24456777888888888432111    1    1222211   2222 44444433 3667777777777664

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.12  E-value=8.1e-09  Score=105.37  Aligned_cols=242  Identities=13%  Similarity=0.077  Sum_probs=166.4

Q ss_pred             hhHHhcCC---cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhc------CCHHHHHHHHhcCChHHHHHH
Q 010019          211 ETFRTGGG---PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMEL------KIDELILEILSRQRNDSIQSL  281 (520)
Q Consensus       211 ~~i~~~gg---i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~------g~i~~Lv~lL~~~~~~~~~~a  281 (520)
                      ..+++..|   ...++.+|+.-+.+.++....+..+..++..++...+.|.+.      ....+++.++.+.+.-+...+
T Consensus        46 ~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a  125 (312)
T PF03224_consen   46 RELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKA  125 (312)
T ss_dssp             ----------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHH
T ss_pred             HHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHH
Confidence            34554433   667788887654678999999999999988877666666552      257888888877655666678


Q ss_pred             HHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCC---hhHHHHHHHHHHHhccChhhHHHHHhcCChHH
Q 010019          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS---SPSLISASIALKAVAVNDEICKSVAENGGIDA  358 (520)
Q Consensus       282 ~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~---~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~  358 (520)
                      +..|..|....+.+..          -...+.++.+++.|++...   .+.+.-++.+|.+|...++++..+.+.||++.
T Consensus       126 ~~iLt~Ll~~~~~~~~----------~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~  195 (312)
T PF03224_consen  126 AFILTSLLSQGPKRSE----------KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSP  195 (312)
T ss_dssp             HHHHHHHHTSTTT--H----------HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHcCCcccc----------chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHH
Confidence            9999988776544331          1113567889999887432   34557788999999999999999999999999


Q ss_pred             HHHHHhc---cCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHH-
Q 010019          359 LLRCIDD---SGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE-  434 (520)
Q Consensus       359 Ll~lL~~---~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~-  434 (520)
                      ++.+|..   .....+..++-.++.++|.|+.+++....+.+.+.++.|+++++.. ..+.|.+-++++|.||....++ 
T Consensus       196 l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~-~KEKvvRv~la~l~Nl~~~~~~~  274 (312)
T PF03224_consen  196 LFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDS-IKEKVVRVSLAILRNLLSKAPKS  274 (312)
T ss_dssp             HHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTT
T ss_pred             HHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhc-ccchHHHHHHHHHHHHHhccHHH
Confidence            9999921   1122346889999999999999999999999999999999999864 4789999999999999976654 


Q ss_pred             HHHHHHhcCcHHHHHHHHHhCCCCHHHHH
Q 010019          435 NAARAMEAGSGDLAIQAMLKFPNAQQLQR  463 (520)
Q Consensus       435 ~~~~i~~~G~i~~lv~~L~~~~~~~~vqk  463 (520)
                      +...++..|+++.+-.+...+-+|+++..
T Consensus       275 ~~~~mv~~~~l~~l~~L~~rk~~Dedl~e  303 (312)
T PF03224_consen  275 NIELMVLCGLLKTLQNLSERKWSDEDLTE  303 (312)
T ss_dssp             HHHHHHHH-HHHHHHHHHSS--SSHHHHH
T ss_pred             HHHHHHHccHHHHHHHHhcCCCCCHHHHH
Confidence            88889988888888777766556776643

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=7.5e-08  Score=98.87  Aligned_cols=321  Identities=11%  Similarity=0.102  Sum_probs=231.1

Q ss_pred             HHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHh
Q 010019          148 GLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILI  227 (520)
Q Consensus       148 ~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~  227 (520)
                      -|+.-|-+++.   +...-.-..+...|..||..|...   +.+++....+-|--+.-=.+++..+.+.|.++.|+++..
T Consensus       282 va~ylLlNlAe---d~~~ElKMrrkniV~mLVKaLdr~---n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp  355 (791)
T KOG1222|consen  282 VAVYLLLNLAE---DISVELKMRRKNIVAMLVKALDRS---NSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFP  355 (791)
T ss_pred             HHHHHHHHHhh---hhhHHHHHHHHhHHHHHHHHHccc---chHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcC
Confidence            34455555554   333344456678889999999874   555554333333222211123567777889999999985


Q ss_pred             cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHH
Q 010019          228 DGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARR  307 (520)
Q Consensus       228 ~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~  307 (520)
                        .+.+++....+..+.|+.-+ ..+|..++..|.+|.|+.+|.+..  -..-|...|..|+.+|+.+.          .
T Consensus       356 --~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~----------M  420 (791)
T KOG1222|consen  356 --IQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKA----------M  420 (791)
T ss_pred             --CCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHH----------H
Confidence              56789999999999998654 568899999999999999998753  23446778889999887654          5


Q ss_pred             HHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC
Q 010019          308 FAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG  387 (520)
Q Consensus       308 i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~  387 (520)
                      ++-..+|+.++..+-.+++.++-.+....--||+.+..|.+.+++-.|++.|++.--.+.+   +    --..+++|++.
T Consensus       421 fayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D---~----lLmK~vRniSq  493 (791)
T KOG1222|consen  421 FAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRD---L----LLMKVVRNISQ  493 (791)
T ss_pred             HHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccc---h----HHHHHHHHhhh
Confidence            5566889999988887776554444433335899999999999998899888775433322   1    24567899998


Q ss_pred             CCc-hHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHH
Q 010019          388 SDS-NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSC  466 (520)
Q Consensus       388 ~~~-~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~  466 (520)
                      ++. -+..+++  .+.-|...+.. .+++...-+|+++|+||...+-+..+.+.+...+|.+-..|+-+.....++-+..
T Consensus       494 Heg~tqn~Fid--yvgdLa~i~~n-d~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~v  570 (791)
T KOG1222|consen  494 HEGATQNMFID--YVGDLAGIAKN-DNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIV  570 (791)
T ss_pred             ccchHHHHHHH--HHHHHHHHhhc-CchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHH
Confidence            775 3444553  56677777763 3466778889999999999888888888899999999999987777777777877


Q ss_pred             HHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCc
Q 010019          467 FMIRNLVARNPENRKLLLSNGVEKLIRQAKENHE  500 (520)
Q Consensus       467 ~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~  500 (520)
                      .++..+ ++.......+...|+.+.+.+++....
T Consensus       571 i~~GT~-a~d~~cA~Lla~a~~i~tlieLL~a~Q  603 (791)
T KOG1222|consen  571 IACGTM-ARDLDCARLLAPAKLIDTLIELLQACQ  603 (791)
T ss_pred             HHhhhh-hhhhHHHHHhCccccHHHHHHHHHhhc
Confidence            778777 555565666667788888888776553

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=2.8e-07  Score=100.21  Aligned_cols=260  Identities=13%  Similarity=0.108  Sum_probs=191.5

Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHH-HhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcchhh
Q 010019          221 LLVNILIDGNEDPEILNSGFAVVAA-SATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVA  298 (520)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~-~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~~  298 (520)
                      .|+.-|...+ ++..|..++.-+.. +...+|+.-..|.-.-.+|.|+.+|+...+ +++..||++|.+||..--...  
T Consensus       171 kLL~gL~~~~-Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~--  247 (1051)
T KOG0168|consen  171 KLLQGLQAES-DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS--  247 (1051)
T ss_pred             HHHHhccccC-ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh--
Confidence            3333344333 45555455444433 334566666666666689999999997655 888899999999995321111  


Q ss_pred             hhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHH
Q 010019          299 SQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARIC  378 (520)
Q Consensus       299 ~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~a  378 (520)
                             -..++.++||.|++-|..-.--++.+.++.||-.++..+  -+.+.++|++...+..|.-++    ..+++.|
T Consensus       248 -------a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFS----i~aQR~A  314 (1051)
T KOG0168|consen  248 -------AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFS----IHAQRVA  314 (1051)
T ss_pred             -------heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHH----HHHHHHH
Confidence                   145588999999999886544567888999999998543  347899999999988887543    2689999


Q ss_pred             HHHHHHhhC--CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc---CCHHHHHHHHhcCcHHHHHHHHH
Q 010019          379 CSLLSKLAG--SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL---RSPENAARAMEAGSGDLAIQAML  453 (520)
Q Consensus       379 l~aL~~La~--~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~---~~~~~~~~i~~~G~i~~lv~~L~  453 (520)
                      +.+..|++.  .++--.-|++  ++|.|..+|.  ..+....|.+|-+++.++.   ..|+.-+++...|.+..+.+++.
T Consensus       315 laiaaN~Cksi~sd~f~~v~e--alPlL~~lLs--~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls  390 (1051)
T KOG0168|consen  315 LAIAANCCKSIRSDEFHFVME--ALPLLTPLLS--YQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS  390 (1051)
T ss_pred             HHHHHHHHhcCCCccchHHHH--HHHHHHHHHh--hccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence            999999984  3444445554  7999999998  4477788999999998864   57888899999999999999986


Q ss_pred             hCCC--CHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCc
Q 010019          454 KFPN--AQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHE  500 (520)
Q Consensus       454 ~~~~--~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~  500 (520)
                      ..+.  +..+.-.-...++-|++++|.....+...++...|..++..+.
T Consensus       391 vt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s  439 (1051)
T KOG0168|consen  391 VTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYS  439 (1051)
T ss_pred             cCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccC
Confidence            5432  2233344556777777888999999999999999999987663

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.85  E-value=2.5e-06  Score=89.49  Aligned_cols=307  Identities=9%  Similarity=0.070  Sum_probs=201.3

Q ss_pred             hHHHHHHHHHHHHHHhcCCCChhhHHHHHhc-----CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhc
Q 010019          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKN-----GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG  216 (520)
Q Consensus       142 d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~-----Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~  216 (520)
                      ..+.+.-.|.-+.+++..  ++..-..+.+.     ..+.+++.+|.+.   |.-+...+...|+.+......+   ...
T Consensus        67 ~~d~vqyvL~Li~dll~~--~~~~~~~f~~~~~~~~~~~~~fl~lL~~~---d~~i~~~a~~iLt~l~~~~~~~---~~~  138 (429)
T cd00256          67 KDDTVRYVLTLIDDMLQE--DDTRVKLFHDDALLKKKTWEPFFNLLNRQ---DQFIVHMSFSILAKLACFGLAK---MEG  138 (429)
T ss_pred             cHHHHHHHHHHHHHHHHh--chHHHHHHHHHhhccccchHHHHHHHcCC---chhHHHHHHHHHHHHHhcCccc---cch
Confidence            345556666666777764  55544455543     5677788888753   5566777777777765332110   011


Q ss_pred             CCcH----HHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh--HHHHHHHHHHHHhcC
Q 010019          217 GGPK----LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--DSIQSLYDAIRVLLT  290 (520)
Q Consensus       217 ggi~----~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~--~~~~~a~~aL~~Ls~  290 (520)
                      ...+    -+...|++. .+...+..|+.++..+.. .+..|..|.+.+++++|+.+|+....  ..+=.++-+++-|++
T Consensus       139 ~~l~~~~~~l~~~l~~~-~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF  216 (429)
T cd00256         139 SDLDYYFNWLKEQLNNI-TNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTF  216 (429)
T ss_pred             hHHHHHHHHHHHHhhcc-CCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence            1222    333444432 345666677788888754 57799999999999999999987542  455558888898988


Q ss_pred             CCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC-------hhhHHHHHhcCChHHHHHHH
Q 010019          291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-------DEICKSVAENGGIDALLRCI  363 (520)
Q Consensus       291 ~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~-------~e~~~~i~~~Ggv~~Ll~lL  363 (520)
                      .++.          +..+.+.+.|+.|+++++..+...+.+-++.+|.||...       ...+..+++.|..+ ++..|
T Consensus       217 ~~~~----------~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L  285 (429)
T cd00256         217 NPHA----------AEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSL  285 (429)
T ss_pred             cHHH----------HHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHH
Confidence            7642          124446789999999999876556778888899999853       23456777777655 44555


Q ss_pred             hc-cCCCCcHHHHHHHHHH-------HHHhhCCCc------------------------hHHHHHhcC--CHHHHHHHHh
Q 010019          364 DD-SGLQGNKTVARICCSL-------LSKLAGSDS------------------------NKSAIIENG--GMDKLIVVSA  409 (520)
Q Consensus       364 ~~-~~~~~~~~v~~~al~a-------L~~La~~~~------------------------~k~~Iv~~g--~l~~Lv~lL~  409 (520)
                      .. .-.  |.++.+..-.+       +..|++.|+                        |...+-+.+  .+..|+++|.
T Consensus       286 ~~rk~~--DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~  363 (429)
T cd00256         286 EQRKYD--DEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLE  363 (429)
T ss_pred             hcCCCC--cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHh
Confidence            43 211  22443322211       122222222                        222332222  3688899995


Q ss_pred             ccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019          410 RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (520)
Q Consensus       410 ~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~  474 (520)
                      . ++++.+..-||-=|..++...|.-+..+-+.|+=+.++++|. | .+++|+++|-.++.-|..
T Consensus       364 ~-s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~-h-~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         364 T-SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLN-H-EDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             c-CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhc-C-CCHHHHHHHHHHHHHHHH
Confidence            4 567888888999999999888888888888999888888885 5 589999999999887744

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=3.8e-06  Score=86.64  Aligned_cols=328  Identities=11%  Similarity=0.049  Sum_probs=218.4

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcH
Q 010019          141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPK  220 (520)
Q Consensus       141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~  220 (520)
                      ++.+...-...-|.+++-   -.+|+....+.|.|..|+.+....   ++++....+..+-++.-|...++.++..|-+|
T Consensus       316 ~n~~Ll~lv~~FLkKLSI---f~eNK~~M~~~~iveKL~klfp~~---h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP  389 (791)
T KOG1222|consen  316 SNSSLLTLVIKFLKKLSI---FDENKIVMEQNGIVEKLLKLFPIQ---HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLP  389 (791)
T ss_pred             cchHHHHHHHHHHHHhhh---hccchHHHHhccHHHHHHHhcCCC---CHHHHHHHHHHhhhccccccccHHHhhccchH
Confidence            344444444444555544   467889999999999999998774   77888888888888887777799999999999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcch--h
Q 010019          221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQV--V  297 (520)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v--~  297 (520)
                      .+..+|.+...    -..|+..+..+. .++..|..|....+|+.+++.+-++.+ ++-......--|||.+.-+.-  .
T Consensus       390 ~l~~ll~~d~~----~~iA~~~lYh~S-~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvc  464 (791)
T KOG1222|consen  390 HLASLLDSDTK----HGIALNMLYHLS-CDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVC  464 (791)
T ss_pred             HHHHHhCCccc----chhhhhhhhhhc-cCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEe
Confidence            99999975321    124666777764 467788999999999999988776644 222222222245665443211  0


Q ss_pred             hhhhc----------------hHHHHHHHc---------CCHHHHHHHHhcCCChhHHHHHHHHHHHhccChh-hHHHHH
Q 010019          298 ASQVY----------------GYARRFAKI---------GIARALVHSLHAGLSSPSLISASIALKAVAVNDE-ICKSVA  351 (520)
Q Consensus       298 ~~~a~----------------~~a~~i~~~---------g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e-~~~~i~  351 (520)
                      -|+.-                .-.|.|-+.         ..+..|...++...+.+...++.++|++|...+- ..+.+-
T Consensus       465 eGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq  544 (791)
T KOG1222|consen  465 EGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQ  544 (791)
T ss_pred             cCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHh
Confidence            01100                001111111         1345555555543334555678889999987554 344444


Q ss_pred             hcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 010019          352 ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR  431 (520)
Q Consensus       352 ~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~  431 (520)
                      +..-||-+-..|..+.++.  +++-...-+++.+|...+....+..+|.++.++++|+....+.+.+-+..-+...+.. 
T Consensus       545 ~~~LvPw~k~~L~pga~ed--dLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~-  621 (791)
T KOG1222|consen  545 SENLVPWMKTQLQPGADED--DLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLK-  621 (791)
T ss_pred             hccccHHHHHhhcCCccch--hhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHH-
Confidence            5567777777776554443  6888888888888988888888899999999999999776666666666666666654 


Q ss_pred             CHHHHHHHHh-cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHH
Q 010019          432 SPENAARAME-AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL  484 (520)
Q Consensus       432 ~~~~~~~i~~-~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~  484 (520)
                      +...+..++. ......++.+|  |..+.++.+-+--+|--++..+.|-.+.+.
T Consensus       622 He~tr~~miket~~~AylIDLM--HDkN~eiRkVCDn~LdIiae~d~EWAKrI~  673 (791)
T KOG1222|consen  622 HELTRRLMIKETALGAYLIDLM--HDKNAEIRKVCDNALDIIAEHDKEWAKRIA  673 (791)
T ss_pred             HHHHHHHHHhhccchHHHHHHH--hcccHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            3444444444 44567888999  767888877777788878767777665554

>PRK09687 putative lyase; Provisional

Probab=98.80  E-value=1.3e-06  Score=87.50  Aligned_cols=254  Identities=13%  Similarity=0.037  Sum_probs=172.3

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Q 010019          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (520)
Q Consensus       124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l  203 (520)
                      ++.|...+..       .|......++..|+.+-.             ..+++.+..++.+.   ++.+...+.++|+.+
T Consensus        25 ~~~L~~~L~d-------~d~~vR~~A~~aL~~~~~-------------~~~~~~l~~ll~~~---d~~vR~~A~~aLg~l   81 (280)
T PRK09687         25 DDELFRLLDD-------HNSLKRISSIRVLQLRGG-------------QDVFRLAIELCSSK---NPIERDIGADILSQL   81 (280)
T ss_pred             HHHHHHHHhC-------CCHHHHHHHHHHHHhcCc-------------chHHHHHHHHHhCC---CHHHHHHHHHHHHhc
Confidence            5566666665       566666677777765322             23667788888764   778888888888876


Q ss_pred             hcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHH
Q 010019          204 VHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYD  283 (520)
Q Consensus       204 ~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~  283 (520)
                      -.....     ....++.|..++. ...++.+...++.+|++++.... ..    ...+++.+...+...+..++..+++
T Consensus        82 g~~~~~-----~~~a~~~L~~l~~-~D~d~~VR~~A~~aLG~~~~~~~-~~----~~~a~~~l~~~~~D~~~~VR~~a~~  150 (280)
T PRK09687         82 GMAKRC-----QDNVFNILNNLAL-EDKSACVRASAINATGHRCKKNP-LY----SPKIVEQSQITAFDKSTNVRFAVAF  150 (280)
T ss_pred             CCCccc-----hHHHHHHHHHHHh-cCCCHHHHHHHHHHHhccccccc-cc----chHHHHHHHHHhhCCCHHHHHHHHH
Confidence            432110     1123466666643 24568899999999998864322 11    1123455666666555577778888


Q ss_pred             HHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHH
Q 010019          284 AIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCI  363 (520)
Q Consensus       284 aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL  363 (520)
                      +|..+..                    ..+++.|+.+|+. ++..+...++.+|+.+...+.        ..++.|+.+|
T Consensus       151 aLg~~~~--------------------~~ai~~L~~~L~d-~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L  201 (280)
T PRK09687        151 ALSVIND--------------------EAAIPLLINLLKD-PNGDVRNWAAFALNSNKYDNP--------DIREAFVAML  201 (280)
T ss_pred             HHhccCC--------------------HHHHHHHHHHhcC-CCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHh
Confidence            8865531                    1258999999985 467788899999999842211        3456788888


Q ss_pred             hccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010019          364 DDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG  443 (520)
Q Consensus       364 ~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G  443 (520)
                      .+.    +..|...|..+|+.+-.          ..++|.|++.|+  .++  +...++.+|.++-.  +         -
T Consensus       202 ~D~----~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~--~~~--~~~~a~~ALg~ig~--~---------~  252 (280)
T PRK09687        202 QDK----NEEIRIEAIIGLALRKD----------KRVLSVLIKELK--KGT--VGDLIIEAAGELGD--K---------T  252 (280)
T ss_pred             cCC----ChHHHHHHHHHHHccCC----------hhHHHHHHHHHc--CCc--hHHHHHHHHHhcCC--H---------h
Confidence            753    34899999999977532          257999999998  333  66778888887763  2         3


Q ss_pred             cHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010019          444 SGDLAIQAMLKFPNAQQLQRSSCFMIR  470 (520)
Q Consensus       444 ~i~~lv~~L~~~~~~~~vqk~A~~aL~  470 (520)
                      .++.|.+++..++ |..|++.|.++|.
T Consensus       253 a~p~L~~l~~~~~-d~~v~~~a~~a~~  278 (280)
T PRK09687        253 LLPVLDTLLYKFD-DNEIITKAIDKLK  278 (280)
T ss_pred             HHHHHHHHHhhCC-ChhHHHHHHHHHh
Confidence            6788888887665 8899999998875

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=1.1e-06  Score=95.63  Aligned_cols=263  Identities=10%  Similarity=0.046  Sum_probs=190.6

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      .+++|-+.+..      ++|+..+++++.+|.++..- -+.+.-..+.-.-.||.|+.+|+...  +.++...|..+|+.
T Consensus       168 k~kkLL~gL~~------~~Des~Qleal~Elce~L~m-gnEesLs~fpv~slvp~Lv~LL~~E~--n~DIMl~AcRalty  238 (1051)
T KOG0168|consen  168 KAKKLLQGLQA------ESDESQQLEALTELCEMLSM-GNEESLSGFPVKSLVPVLVALLSHEH--NFDIMLLACRALTY  238 (1051)
T ss_pred             HHHHHHHhccc------cCChHHHHHHHHHHHHHHhh-cchhhhccccHHHHHHHHHHHHhccc--cHHHHHHHHHHHHH
Confidence            34555555544      25888899999999887653 13444445555668999999998764  45665555566655


Q ss_pred             hhcccc-cchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHH
Q 010019          203 LVHDVQ-STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL  281 (520)
Q Consensus       203 l~~~~~-~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a  281 (520)
                      ++.--+ +...+++.+.||.|++=|.. .+-.++.+.++.+|..+...|.   ..+.++|++...+..|.-.+..+++.|
T Consensus       239 l~evlP~S~a~vV~~~aIPvl~~kL~~-IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~A  314 (1051)
T KOG0168|consen  239 LCEVLPRSSAIVVDEHAIPVLLEKLLT-IEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVA  314 (1051)
T ss_pred             HHhhccchhheeecccchHHHHHhhhh-hhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            553332 24566788999999886642 3457888999999988876554   577899999999999988777899999


Q ss_pred             HHHHHHhcCC---CCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc----ChhhHHHHHhcC
Q 010019          282 YDAIRVLLTP---DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV----NDEICKSVAENG  354 (520)
Q Consensus       282 ~~aL~~Ls~~---dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~----~~e~~~~i~~~G  354 (520)
                      ..+..|+|..   |+..           -+++  ++|.|..+|+.. |...++.+|.++.+++.    .++--+++...|
T Consensus       315 laiaaN~Cksi~sd~f~-----------~v~e--alPlL~~lLs~~-D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~d  380 (1051)
T KOG0168|consen  315 LAIAANCCKSIRSDEFH-----------FVME--ALPLLTPLLSYQ-DKKPIESVCICLTRIADGFQHGPDKLDQLCSHD  380 (1051)
T ss_pred             HHHHHHHHhcCCCccch-----------HHHH--HHHHHHHHHhhc-cchhHHHHHHHHHHHHHhcccChHHHHHHhchh
Confidence            9999998863   2221           3555  699999999864 56678899999988872    456678889999


Q ss_pred             ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccC
Q 010019          355 GIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFS  412 (520)
Q Consensus       355 gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~  412 (520)
                      -|.....||.-.+..-+..+-....+.|..++. ++.......+.+....|..+|..++
T Consensus       381 Li~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s  439 (1051)
T KOG0168|consen  381 LITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYS  439 (1051)
T ss_pred             HHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccC
Confidence            999999988754322223566677788888874 5888888888888888888887554

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.73  E-value=4.5e-06  Score=89.20  Aligned_cols=141  Identities=12%  Similarity=0.142  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHhhCC-CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHH
Q 010019          372 KTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQ  450 (520)
Q Consensus       372 ~~v~~~al~aL~~La~~-~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~  450 (520)
                      ...+.+||-++.+++.+ +.-+...-...++.++|+++.  .++..|+..++++|+||...-..-+..+++.||++.+..
T Consensus       391 ~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~--dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s  468 (678)
T KOG1293|consen  391 HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM--DPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES  468 (678)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh--CcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence            45666777777777633 223333445578899999995  667889999999999999987788889999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCc--chHHHHHHHHHHcCCC
Q 010019          451 AMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHE--ICKDAATDALRDLGLD  516 (520)
Q Consensus       451 ~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~--~~~~~a~aALr~Lg~~  516 (520)
                      .+.+  .++.+.+.+-|+||++.-...+-.....-..+..-....+.+.|  ..+..+-.-||||-|+
T Consensus       469 ~~~~--~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  469 MLTD--PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HhcC--CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            8865  46778899999999998665555444333333322222233444  5788899999999997

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.71  E-value=1.3e-05  Score=81.87  Aligned_cols=318  Identities=18%  Similarity=0.172  Sum_probs=215.0

Q ss_pred             cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhc-------CCcHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 010019          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG-------GGPKLLVNILIDGNEDPEILNSGFAVVAAS  246 (520)
Q Consensus       174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~-------ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~  246 (520)
                      .+..++.+++..+  ..+....+|.-+.-++.++..+..+...       -.-+..+.+|.++  +.-+...+.+.++.+
T Consensus        66 ~v~~fi~LlS~~~--kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~--d~~iv~~~~~Ils~l  141 (442)
T KOG2759|consen   66 YVKTFINLLSHID--KDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQ--DTFIVEMSFRILSKL  141 (442)
T ss_pred             HHHHHHHHhchhh--hHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcC--ChHHHHHHHHHHHHH
Confidence            4566777877642  3345556677777666665555444321       1256778888754  455555577777665


Q ss_pred             hcCChh--hH-HHHHhcCCHHHHHHHHhc-CChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHh
Q 010019          247 ATGNEV--VK-ESYMELKIDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH  322 (520)
Q Consensus       247 ~~~~e~--nr-~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~  322 (520)
                      +.-...  .. +.-..   ...|-.+|++ ++++...-+.+.|..|.+.++.|.          .++.++|+..|+..+.
T Consensus       142 a~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~----------~~v~adg~~~l~~~l~  208 (442)
T KOG2759|consen  142 ACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY----------AFVIADGVSLLIRILA  208 (442)
T ss_pred             HHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh----------eeeecCcchhhHHHHh
Confidence            432111  11 11111   2345556666 445777788888999999998887          5777888999999984


Q ss_pred             -cCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCC-------chHHH
Q 010019          323 -AGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD-------SNKSA  394 (520)
Q Consensus       323 -~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~-------~~k~~  394 (520)
                       +..+-.++-..+.++|-|+.++..++.+...+.++.|.++++....+   .|.+-++++++|+....       +....
T Consensus       209 s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KE---KV~Rivlai~~Nll~k~~~~~~~k~~~~~  285 (442)
T KOG2759|consen  209 STKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKE---KVTRIVLAIFRNLLDKGPDRETKKDIASQ  285 (442)
T ss_pred             ccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence             33345677889999999999999999998888999999999976543   89999999999998544       33355


Q ss_pred             HHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHH-------hc--------------CCH---------HHHHHHHhcC-
Q 010019          395 IIENGGMDKLIVVSARFSDDASVLQEVMSIITVL-------SL--------------RSP---------ENAARAMEAG-  443 (520)
Q Consensus       395 Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nL-------a~--------------~~~---------~~~~~i~~~G-  443 (520)
                      ++..+..+.+-.+.++--+++++....--.-..|       +.              -+|         +|+..+-+.. 
T Consensus       286 mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnenny  365 (442)
T KOG2759|consen  286 MVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNY  365 (442)
T ss_pred             HHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccH
Confidence            6665555544444444335666544332222111       11              011         4666665554 


Q ss_pred             -cHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC--cchHHHHHHHHHHc
Q 010019          444 -SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH--EICKDAATDALRDL  513 (520)
Q Consensus       444 -~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h--~~~~~~a~aALr~L  513 (520)
                       .+..|+.+|+. +.+|.+..-||.-|...+...|+-+..+-+.|+-..+..++ +|  |+..-.|--|+..|
T Consensus       366 ellkiL~~lLe~-s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Ll-nh~d~~Vry~ALlavQ~l  436 (442)
T KOG2759|consen  366 ELLKILIKLLET-SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLL-NHEDPEVRYHALLAVQKL  436 (442)
T ss_pred             HHHHHHHHHHhc-CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHh-cCCCchHHHHHHHHHHHH
Confidence             47788888875 46788888999999999988999999999999999998888 66  45667777776655

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=9.9e-05  Score=80.42  Aligned_cols=342  Identities=13%  Similarity=0.119  Sum_probs=233.7

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHH
Q 010019          118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCL  197 (520)
Q Consensus       118 ~~~~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al  197 (520)
                      +.+.+.|+.|...+.++      .=.+....|++.|..++++     +|..++.. |+++|+..|... -.|++....+|
T Consensus        18 ~s~aETI~kLcDRvess------TL~eDRR~A~rgLKa~srk-----YR~~Vga~-Gmk~li~vL~~D-~~D~E~ik~~L   84 (970)
T KOG0946|consen   18 QSAAETIEKLCDRVESS------TLLEDRRDAVRGLKAFSRK-----YREEVGAQ-GMKPLIQVLQRD-YMDPEIIKYAL   84 (970)
T ss_pred             ccHHhHHHHHHHHHhhc------cchhhHHHHHHHHHHHHHH-----HHHHHHHc-ccHHHHHHHhhc-cCCHHHHHHHH
Confidence            55567888888887763      4477788899999888775     88877655 577888888753 25889999999


Q ss_pred             HHHHHhhccc-------ccc----------hhHHh-cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHh-cCChhhHHHHH
Q 010019          198 KTMALLVHDV-------QST----------ETFRT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASA-TGNEVVKESYM  258 (520)
Q Consensus       198 ~~La~l~~~~-------~~~----------~~i~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~-~~~e~nr~~i~  258 (520)
                      .++..+....       +++          +.|+. .+-|..|+..+..+  +-.+...++..+.++. ....+.++.++
T Consensus        85 dTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~--DF~VR~~aIqLlsalls~r~~e~q~~ll  162 (970)
T KOG0946|consen   85 DTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF--DFHVRLYAIQLLSALLSCRPTELQDALL  162 (970)
T ss_pred             HHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh--chhhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence            9999886332       222          22333 46688888888643  5567777887777754 34566788888


Q ss_pred             hcC-CHHHHHHHHhcCChHHHHH-HHHHHHHhcCCCCcchhhhhhchHHHHHH-HcCCHHHHHHHHhcCC--Ch-hHHHH
Q 010019          259 ELK-IDELILEILSRQRNDSIQS-LYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGL--SS-PSLIS  332 (520)
Q Consensus       259 ~~g-~i~~Lv~lL~~~~~~~~~~-a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~-~~g~l~~Lv~lL~~~~--~~-~~~~~  332 (520)
                      ... +|..|+.+|+... +.+++ +.-.|..|+.+..          +.++++ =.++.+.|..+++..+  |. -+..+
T Consensus       163 ~~P~gIS~lmdlL~Dsr-E~IRNe~iLlL~eL~k~n~----------~IQKlVAFENaFerLfsIIeeEGg~dGgIVveD  231 (970)
T KOG0946|consen  163 VSPMGISKLMDLLRDSR-EPIRNEAILLLSELVKDNS----------SIQKLVAFENAFERLFSIIEEEGGLDGGIVVED  231 (970)
T ss_pred             HCchhHHHHHHHHhhhh-hhhchhHHHHHHHHHccCc----------hHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence            775 8999999998633 55555 7777788877552          234565 3578999999998744  43 46688


Q ss_pred             HHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccC--CC----Cc-HHH--HHHHHHHHHHhhC--CC-----chHHHH
Q 010019          333 ASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSG--LQ----GN-KTV--ARICCSLLSKLAG--SD-----SNKSAI  395 (520)
Q Consensus       333 a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~--~~----~~-~~v--~~~al~aL~~La~--~~-----~~k~~I  395 (520)
                      +...|-||.. |..|.+.+.+.+-|+.|..+|..+.  +.    .+ ..+  +..++.+++.|..  +.     .+..++
T Consensus       232 CL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l  311 (970)
T KOG0946|consen  232 CLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKAL  311 (970)
T ss_pred             HHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            8889999984 5567777888888999998886531  10    01 112  2456777777763  22     233467


Q ss_pred             HhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC---------cHHHHHHHHHhCCCCHHHHHHHH
Q 010019          396 IENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG---------SGDLAIQAMLKFPNAQQLQRSSC  466 (520)
Q Consensus       396 v~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G---------~i~~lv~~L~~~~~~~~vqk~A~  466 (520)
                      ...+++..|..++-...-..+|+..+.-++++...++..+...+.+-.         .+-.++..|....-.+...-...
T Consensus       312 ~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~  391 (970)
T KOG0946|consen  312 VSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVL  391 (970)
T ss_pred             HHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHH
Confidence            888999999998863223578999999999999988888888776532         23344445544333344433444


Q ss_pred             HHHHHHhhhChhhHHHHHh
Q 010019          467 FMIRNLVARNPENRKLLLS  485 (520)
Q Consensus       467 ~aL~nL~~~~~e~~~~l~~  485 (520)
                      ..++.+..+|.+....|+.
T Consensus       392 ycf~s~l~dN~~gq~~~l~  410 (970)
T KOG0946|consen  392 YCFRSYLYDNDDGQRKFLK  410 (970)
T ss_pred             HHHHHHHhcchhhHHHHHH
Confidence            5666666677776666653

>PRK09687 putative lyase; Provisional

Probab=98.69  E-value=5.1e-06  Score=83.36  Aligned_cols=251  Identities=10%  Similarity=0.041  Sum_probs=168.0

Q ss_pred             cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 010019          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV  253 (520)
Q Consensus       174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n  253 (520)
                      .++.|+.+|.+.   +..+...+..+|..+-.          ....+.+.+++.  ++++.+...++++|+.+-. ....
T Consensus        24 ~~~~L~~~L~d~---d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~-~~~~   87 (280)
T PRK09687         24 NDDELFRLLDDH---NSLKRISSIRVLQLRGG----------QDVFRLAIELCS--SKNPIERDIGADILSQLGM-AKRC   87 (280)
T ss_pred             cHHHHHHHHhCC---CHHHHHHHHHHHHhcCc----------chHHHHHHHHHh--CCCHHHHHHHHHHHHhcCC-Cccc
Confidence            467888888764   77777777787776532          113466677665  4578999999999988632 1111


Q ss_pred             HHHHHhcCCHHHHHHHHhcC-ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHH
Q 010019          254 KESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS  332 (520)
Q Consensus       254 r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~  332 (520)
                           ...+++.|..++... ...++..|+.+|..++.......              ..+++.+..++.. .+..+...
T Consensus        88 -----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~--------------~~a~~~l~~~~~D-~~~~VR~~  147 (280)
T PRK09687         88 -----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYS--------------PKIVEQSQITAFD-KSTNVRFA  147 (280)
T ss_pred             -----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccc--------------hHHHHHHHHHhhC-CCHHHHHH
Confidence                 123567777775444 44677789999999875432110              1134555555554 35678888


Q ss_pred             HHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccC
Q 010019          333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS  412 (520)
Q Consensus       333 a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~  412 (520)
                      ++++|..+.          ...+++.|+.+|.+.    +..|...|+.+|+.+...+        ..+++.|+.+|.  .
T Consensus       148 a~~aLg~~~----------~~~ai~~L~~~L~d~----~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~--D  203 (280)
T PRK09687        148 VAFALSVIN----------DEAAIPLLINLLKDP----NGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQ--D  203 (280)
T ss_pred             HHHHHhccC----------CHHHHHHHHHHhcCC----CHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhc--C
Confidence            999997663          122578999999862    3489999999999883211        145678999997  6


Q ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHH
Q 010019          413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLI  492 (520)
Q Consensus       413 ~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL  492 (520)
                      .++.|+..|.++|..+-  ++         -+++.|++.|..  ++  +...|+.||.++  +++         -+.+.|
T Consensus       204 ~~~~VR~~A~~aLg~~~--~~---------~av~~Li~~L~~--~~--~~~~a~~ALg~i--g~~---------~a~p~L  257 (280)
T PRK09687        204 KNEEIRIEAIIGLALRK--DK---------RVLSVLIKELKK--GT--VGDLIIEAAGEL--GDK---------TLLPVL  257 (280)
T ss_pred             CChHHHHHHHHHHHccC--Ch---------hHHHHHHHHHcC--Cc--hHHHHHHHHHhc--CCH---------hHHHHH
Confidence            78999999999999754  22         478899999864  23  667888999888  233         246667


Q ss_pred             HHHHHhCc--chHHHHHHHH
Q 010019          493 RQAKENHE--ICKDAATDAL  510 (520)
Q Consensus       493 ~~~~~~h~--~~~~~a~aAL  510 (520)
                      ..++..++  .+...|..||
T Consensus       258 ~~l~~~~~d~~v~~~a~~a~  277 (280)
T PRK09687        258 DTLLYKFDDNEIITKAIDKL  277 (280)
T ss_pred             HHHHhhCCChhHHHHHHHHH
Confidence            77776675  2444455554

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.67  E-value=1.7e-05  Score=92.24  Aligned_cols=244  Identities=12%  Similarity=0.077  Sum_probs=158.0

Q ss_pred             CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 010019          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV  252 (520)
Q Consensus       173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~  252 (520)
                      +++|.|+.+|+.   ++..+...|+.+|..+....         ...+.|...|.+  +++.+...++.+|..+-     
T Consensus       652 ~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~---------~~~~~L~~~L~~--~d~~VR~~A~~aL~~~~-----  712 (897)
T PRK13800        652 GFGPALVAALGD---GAAAVRRAAAEGLRELVEVL---------PPAPALRDHLGS--PDPVVRAAALDVLRALR-----  712 (897)
T ss_pred             hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhcc---------CchHHHHHHhcC--CCHHHHHHHHHHHHhhc-----
Confidence            467888888865   36777777777776653211         112456666753  56788878777776532     


Q ss_pred             hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHH
Q 010019          253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS  332 (520)
Q Consensus       253 nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~  332 (520)
                             .+-...|+..|+..+..+...|+.+|..+-                       ..+.|..++.. +++.+...
T Consensus       713 -------~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~-----------------------~~~~l~~~l~D-~~~~VR~~  761 (897)
T PRK13800        713 -------AGDAALFAAALGDPDHRVRIEAVRALVSVD-----------------------DVESVAGAATD-ENREVRIA  761 (897)
T ss_pred             -------cCCHHHHHHHhcCCCHHHHHHHHHHHhccc-----------------------CcHHHHHHhcC-CCHHHHHH
Confidence                   122345677777655577777777776541                       12445566654 46788888


Q ss_pred             HHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccC
Q 010019          333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS  412 (520)
Q Consensus       333 a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~  412 (520)
                      ++.+|..+...        +.+.++.|+.++.+.    ++.|...++.+|+.+...+         ..++.++.+|.  .
T Consensus       762 aa~aL~~~~~~--------~~~~~~~L~~ll~D~----d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~--d  818 (897)
T PRK13800        762 VAKGLATLGAG--------GAPAGDAVRALTGDP----DPLVRAAALAALAELGCPP---------DDVAAATAALR--A  818 (897)
T ss_pred             HHHHHHHhccc--------cchhHHHHHHHhcCC----CHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhc--C
Confidence            99999888532        223367788887752    3589999999998874321         12356788887  6


Q ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHH
Q 010019          413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLI  492 (520)
Q Consensus       413 ~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL  492 (520)
                      +++.|+..|+.+|..+..           ...++.|+.+|+.  .+..|++.|.++|..+ ..++..         .+.|
T Consensus       819 ~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D--~~~~VR~~A~~aL~~~-~~~~~a---------~~~L  875 (897)
T PRK13800        819 SAWQVRQGAARALAGAAA-----------DVAVPALVEALTD--PHLDVRKAAVLALTRW-PGDPAA---------RDAL  875 (897)
T ss_pred             CChHHHHHHHHHHHhccc-----------cchHHHHHHHhcC--CCHHHHHHHHHHHhcc-CCCHHH---------HHHH
Confidence            788999999999987753           1245888888854  5789999999999886 233332         4445


Q ss_pred             HHHHHh-CcchHHHHHHHHHH
Q 010019          493 RQAKEN-HEICKDAATDALRD  512 (520)
Q Consensus       493 ~~~~~~-h~~~~~~a~aALr~  512 (520)
                      ..++.. .++.+.+|..||+.
T Consensus       876 ~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        876 TTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHHhCCCHHHHHHHHHHHhh
Confidence            455432 23455566666653

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=1.5e-05  Score=80.38  Aligned_cols=163  Identities=13%  Similarity=0.238  Sum_probs=137.6

Q ss_pred             ChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHH
Q 010019          326 SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKL  404 (520)
Q Consensus       326 ~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~L  404 (520)
                      +.+-+..++--|-.++.+-+|-..+...||..+++..+...    ++.+.+.|+++|+..+. ||.....+.+.||++.|
T Consensus        96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~----~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENS----DAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCC----cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            44566777777888887888889999999999999977752    35899999999999984 68888999999999999


Q ss_pred             HHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHH
Q 010019          405 IVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL  484 (520)
Q Consensus       405 v~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~  484 (520)
                      +..+. +.++-.++..|+.++++|-..++.-...+...+|...|..+|+....+...|+.+..+|..+..........+-
T Consensus       172 l~~ls-~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~  250 (342)
T KOG2160|consen  172 LKILS-SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS  250 (342)
T ss_pred             HHHHc-cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            99998 45667888999999999999899999999999999999999998778899999999999999876666666555


Q ss_pred             hCCHHHHHH
Q 010019          485 SNGVEKLIR  493 (520)
Q Consensus       485 ~~G~~~lL~  493 (520)
                      ..|....+.
T Consensus       251 ~~~f~~~~~  259 (342)
T KOG2160|consen  251 SLGFQRVLE  259 (342)
T ss_pred             HhhhhHHHH
Confidence            555554443

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=2.9e-05  Score=78.32  Aligned_cols=184  Identities=21%  Similarity=0.184  Sum_probs=139.7

Q ss_pred             cHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHH
Q 010019          189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE  268 (520)
Q Consensus       189 ~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~  268 (520)
                      +.+-..-|+..|.-++++-++-.+++..||..+++..|+  +.+.++...|+|+|+.+...++...+.+++.|+.+.|+.
T Consensus        96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~--~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLE--NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhc--CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            445577889999999877776789999999999999886  457899999999999999999999999999999999999


Q ss_pred             HHhcCCh-HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhccChhh
Q 010019          269 ILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVNDEI  346 (520)
Q Consensus       269 lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~-~~~~~~~a~~aL~~La~~~e~  346 (520)
                      .|.+.++ .+...|..++++|-++..+-.         ..+...+|...|..+|++.+ +...+.-++..|.+|...+..
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~---------~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s  244 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQ---------DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS  244 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHH---------HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence            9997654 666778999999988764322         36668899999999999864 456778889999999854433


Q ss_pred             HHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010019          347 CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA  386 (520)
Q Consensus       347 ~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La  386 (520)
                      ...++..-+.+..+..+....+.   ++.+.++.++-.+.
T Consensus       245 ~~d~~~~~~f~~~~~~l~~~l~~---~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  245 DEDIASSLGFQRVLENLISSLDF---EVNEAALTALLSLL  281 (342)
T ss_pred             hhhHHHHhhhhHHHHHHhhccch---hhhHHHHHHHHHHH
Confidence            33355544455544444433222   56666666554443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=0.00015  Score=79.09  Aligned_cols=282  Identities=16%  Similarity=0.191  Sum_probs=197.0

Q ss_pred             cHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh------hhH--------
Q 010019          189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE------VVK--------  254 (520)
Q Consensus       189 ~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e------~nr--------  254 (520)
                      |+.-++.+|++++-   ..   ..-+.+.|+++++..|.+...++++...++..+.++.+..+      +.+        
T Consensus        39 DRR~A~rgLKa~sr---kY---R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~  112 (970)
T KOG0946|consen   39 DRRDAVRGLKAFSR---KY---REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLW  112 (970)
T ss_pred             hHHHHHHHHHHHHH---HH---HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHH
Confidence            44445555555553   32   33456779999999999988999999999999998876442      222        


Q ss_pred             --HHHH-hcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH-cCCHHHHHHHHhcCCChhHH
Q 010019          255 --ESYM-ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK-IGIARALVHSLHAGLSSPSL  330 (520)
Q Consensus       255 --~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~-~g~l~~Lv~lL~~~~~~~~~  330 (520)
                        +.|+ ..+-|..|+..+...+-.+++.+...|.+|....-..+        ...+.. --||..|+.+|+... ..+.
T Consensus       113 iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~--------q~~ll~~P~gIS~lmdlL~Dsr-E~IR  183 (970)
T KOG0946|consen  113 IAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTEL--------QDALLVSPMGISKLMDLLRDSR-EPIR  183 (970)
T ss_pred             HHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHH--------HHHHHHCchhHHHHHHHHhhhh-hhhc
Confidence              2445 34678889988887655888889999998876543222        123333 478999999998754 3356


Q ss_pred             HHHHHHHHHhccChhhHHHHHh-cCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHH
Q 010019          331 ISASIALKAVAVNDEICKSVAE-NGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVS  408 (520)
Q Consensus       331 ~~a~~aL~~La~~~e~~~~i~~-~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL  408 (520)
                      -++...|..|..++.+.++++. .++...|..++..-+.....-|+..|+.+|-||-. +-.|...+.+.+-+|.|..+|
T Consensus       184 Ne~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL  263 (970)
T KOG0946|consen  184 NEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLL  263 (970)
T ss_pred             hhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhc
Confidence            6778888999976666666664 46778889988763311112688999999999985 567777788878899999988


Q ss_pred             hccC-CC-------H-H--HHHHHHHHHHHHhcC-C-----HHHHHHHHhcCcHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 010019          409 ARFS-DD-------A-S--VLQEVMSIITVLSLR-S-----PENAARAMEAGSGDLAIQAMLKFP-NAQQLQRSSCFMIR  470 (520)
Q Consensus       409 ~~~~-~~-------~-~--v~~~a~~aL~nLa~~-~-----~~~~~~i~~~G~i~~lv~~L~~~~-~~~~vqk~A~~aL~  470 (520)
                      ..+. .+       + .  -.-.++.+++.|... +     ..+.+.+...+++..|..++. |+ -..+|+..+.-+++
T Consensus       264 ~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~-~~~vp~dIltesiitvA  342 (970)
T KOG0946|consen  264 SVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILM-HPGVPADILTESIITVA  342 (970)
T ss_pred             CcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHc-CCCCcHhHHHHHHHHHH
Confidence            6532 11       1 1  122344455555421 1     134457788889988888774 65 45679999999999


Q ss_pred             HHhhhChhhHHHHHhC
Q 010019          471 NLVARNPENRKLLLSN  486 (520)
Q Consensus       471 nL~~~~~e~~~~l~~~  486 (520)
                      +++.++..++..|.+-
T Consensus       343 evVRgn~~nQ~~F~~v  358 (970)
T KOG0946|consen  343 EVVRGNARNQDEFADV  358 (970)
T ss_pred             HHHHhchHHHHHHhhc
Confidence            9998899999888863

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.44  E-value=6.1e-05  Score=87.56  Aligned_cols=246  Identities=15%  Similarity=0.082  Sum_probs=159.4

Q ss_pred             hcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 010019          171 KNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN  250 (520)
Q Consensus       171 ~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~  250 (520)
                      ..+.++.|++.|.+   +++.+...|+.+|+.+..          .+.++.|+..|+  .++..+...++.+|..+....
T Consensus       619 ~~~~~~~L~~~L~D---~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~--D~d~~VR~~Aa~aL~~l~~~~  683 (897)
T PRK13800        619 DAPSVAELAPYLAD---PDPGVRRTAVAVLTETTP----------PGFGPALVAALG--DGAAAVRRAAAEGLRELVEVL  683 (897)
T ss_pred             cchhHHHHHHHhcC---CCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcc
Confidence            45566777787765   377788777777776532          234677888885  456777777777776553111


Q ss_pred             hhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHH
Q 010019          251 EVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSL  330 (520)
Q Consensus       251 e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~  330 (520)
                                ...+.|...|.+.+..++..|+.+|..+...                     -...|+..|+. +|+.+.
T Consensus       684 ----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~---------------------~~~~l~~~L~D-~d~~VR  731 (897)
T PRK13800        684 ----------PPAPALRDHLGSPDPVVRAAALDVLRALRAG---------------------DAALFAAALGD-PDHRVR  731 (897)
T ss_pred             ----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccC---------------------CHHHHHHHhcC-CCHHHH
Confidence                      1235677777765556666677777765421                     13456666764 467788


Q ss_pred             HHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhc
Q 010019          331 ISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSAR  410 (520)
Q Consensus       331 ~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~  410 (520)
                      ..++.+|..+-             ..+.|+.++.+    +++.|...++.+|..+...        ....++.|..+++ 
T Consensus       732 ~~Av~aL~~~~-------------~~~~l~~~l~D----~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~-  785 (897)
T PRK13800        732 IEAVRALVSVD-------------DVESVAGAATD----ENREVRIAVAKGLATLGAG--------GAPAGDAVRALTG-  785 (897)
T ss_pred             HHHHHHHhccc-------------CcHHHHHHhcC----CCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhc-
Confidence            88888888752             22446666654    2468999999999887542        1234788888887 


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHH
Q 010019          411 FSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEK  490 (520)
Q Consensus       411 ~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~  490 (520)
                       .+++.|+..++.+|..+... +         .....++.+|+.  +++.|.+.|+++|..+.  +++         ..+
T Consensus       786 -D~d~~VR~aA~~aLg~~g~~-~---------~~~~~l~~aL~d--~d~~VR~~Aa~aL~~l~--~~~---------a~~  841 (897)
T PRK13800        786 -DPDPLVRAAALAALAELGCP-P---------DDVAAATAALRA--SAWQVRQGAARALAGAA--ADV---------AVP  841 (897)
T ss_pred             -CCCHHHHHHHHHHHHhcCCc-c---------hhHHHHHHHhcC--CChHHHHHHHHHHHhcc--ccc---------hHH
Confidence             66899999999999987531 1         123456777754  57899999999998773  222         224


Q ss_pred             HHHHHHH-hCcchHHHHHHHHHHc
Q 010019          491 LIRQAKE-NHEICKDAATDALRDL  513 (520)
Q Consensus       491 lL~~~~~-~h~~~~~~a~aALr~L  513 (520)
                      .|..++. .++.++..|..||..+
T Consensus       842 ~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        842 ALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHhcc
Confidence            4444442 2345666677777665

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.43  E-value=6.5e-05  Score=80.54  Aligned_cols=153  Identities=16%  Similarity=0.196  Sum_probs=117.4

Q ss_pred             ChhHHHHHHHHHHHhccC-hhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHH
Q 010019          326 SSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDK  403 (520)
Q Consensus       326 ~~~~~~~a~~aL~~La~~-~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~  403 (520)
                      |......||..+.+++.. ..-+...-+..|..+|+.++.+. +   ..+...++++|.||.. ..+-|..+++.||++.
T Consensus       390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~---~~i~~~~lgai~NlVmefs~~kskfl~~ngId~  465 (678)
T KOG1293|consen  390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-E---IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI  465 (678)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-c---hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH
Confidence            556667777777777632 22333456777889999999652 2   3788999999999984 4667888999999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcH-HHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHH
Q 010019          404 LIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSG-DLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKL  482 (520)
Q Consensus       404 Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i-~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~  482 (520)
                      +.+++.  ..++.++..+.|+|+++..++.+..+........ ..++.+. .. .++.||+++--.+||++....+....
T Consensus       466 l~s~~~--~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~-nd-~d~~Vqeq~fqllRNl~c~~~~svdf  541 (678)
T KOG1293|consen  466 LESMLT--DPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLI-ND-PDWAVQEQCFQLLRNLTCNSRKSVDF  541 (678)
T ss_pred             HHHHhc--CCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHH-hC-CCHHHHHHHHHHHHHhhcCcHHHHHH
Confidence            999998  6688999999999999999887766655444433 3444444 33 58999999999999998877888888


Q ss_pred             HHhC
Q 010019          483 LLSN  486 (520)
Q Consensus       483 l~~~  486 (520)
                      +++.
T Consensus       542 ll~~  545 (678)
T KOG1293|consen  542 LLEK  545 (678)
T ss_pred             HHHh
Confidence            8765

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.35  E-value=0.00081  Score=73.39  Aligned_cols=370  Identities=15%  Similarity=0.189  Sum_probs=219.7

Q ss_pred             HHHHHhhcCCChhHHHHHHHHH---HhhcCcccCCc----cccCCCCCC-------------CCC--CcHHHHHHHHHHH
Q 010019           73 VKENMEDLGMEPTEALQDAIQT---LSLQGVDLSGI----VKCVPGESS-------------LKD--NPLIQSLERLKQL  130 (520)
Q Consensus        73 V~eni~~~~m~p~eal~~aI~q---f~~qgvdls~i----~~~~~~~~~-------------~~~--~~~~~~l~~L~~~  130 (520)
                      +++-.++|. ...+-.++++.+   +..+|.|.+..    ++-.....-             ...  ..+.-++..|+.-
T Consensus         9 l~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kd   87 (526)
T PF01602_consen    9 LAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKD   87 (526)
T ss_dssp             HHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh
Confidence            566666776 444455666666   37799998744    222221100             011  1122345566666


Q ss_pred             hhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccc
Q 010019          131 DLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST  210 (520)
Q Consensus       131 l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~  210 (520)
                      +.+       +++....-||+.|..++.    ++-..     -.+|.+..++.+.   ++-++..|+.++..+....   
T Consensus        88 l~~-------~n~~~~~lAL~~l~~i~~----~~~~~-----~l~~~v~~ll~~~---~~~VRk~A~~~l~~i~~~~---  145 (526)
T PF01602_consen   88 LNS-------PNPYIRGLALRTLSNIRT----PEMAE-----PLIPDVIKLLSDP---SPYVRKKAALALLKIYRKD---  145 (526)
T ss_dssp             HCS-------SSHHHHHHHHHHHHHH-S----HHHHH-----HHHHHHHHHHHSS---SHHHHHHHHHHHHHHHHHC---
T ss_pred             hcC-------CCHHHHHHHHhhhhhhcc----cchhh-----HHHHHHHHHhcCC---chHHHHHHHHHHHHHhccC---
Confidence            655       556566666666666553    22111     1467778888764   7788888888888876543   


Q ss_pred             hhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 010019          211 ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLT  290 (520)
Q Consensus       211 ~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~  290 (520)
                      ++.+..+-++.+.++|.  ..++.++..|+.++..+ ..++..-..+. ...+..|.+++...++-.+..+.+.|..++.
T Consensus       146 p~~~~~~~~~~l~~lL~--d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~  221 (526)
T PF01602_consen  146 PDLVEDELIPKLKQLLS--DKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAP  221 (526)
T ss_dssp             HCCHHGGHHHHHHHHTT--HSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred             HHHHHHHHHHHHhhhcc--CCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence            33332225788888885  34689999999999887 22221100111 1223344444444444555667788887775


Q ss_pred             CCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCC
Q 010019          291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQG  370 (520)
Q Consensus       291 ~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~  370 (520)
                      .+....            -+...++.+..++++. ++.+.-+++.++..+...+.     .-..+++.|+.+|.+ +   
T Consensus       222 ~~~~~~------------~~~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s-~---  279 (526)
T PF01602_consen  222 MEPEDA------------DKNRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSS-S---  279 (526)
T ss_dssp             SSHHHH------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTS-S---
T ss_pred             CChhhh------------hHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhc-c---
Confidence            442111            0034678888888853 46788889999998886665     223446789999984 2   


Q ss_pred             cHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHH
Q 010019          371 NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQ  450 (520)
Q Consensus       371 ~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~  450 (520)
                      +..+.-.++..|..++...  ...+ .  .....+..+. +.+++.++..++..|..++  +++|...++     +.+..
T Consensus       280 ~~nvr~~~L~~L~~l~~~~--~~~v-~--~~~~~~~~l~-~~~d~~Ir~~~l~lL~~l~--~~~n~~~Il-----~eL~~  346 (526)
T PF01602_consen  280 DPNVRYIALDSLSQLAQSN--PPAV-F--NQSLILFFLL-YDDDPSIRKKALDLLYKLA--NESNVKEIL-----DELLK  346 (526)
T ss_dssp             SHHHHHHHHHHHHHHCCHC--HHHH-G--THHHHHHHHH-CSSSHHHHHHHHHHHHHH----HHHHHHHH-----HHHHH
T ss_pred             cchhehhHHHHHHHhhccc--chhh-h--hhhhhhheec-CCCChhHHHHHHHHHhhcc--cccchhhHH-----HHHHH
Confidence            2478999999999998654  2333 3  4445555664 3678999999999999999  567777753     45666


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHH--------------hCCHHHHHHHHHHhCcchHHH
Q 010019          451 AMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL--------------SNGVEKLIRQAKENHEICKDA  505 (520)
Q Consensus       451 ~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~--------------~~G~~~lL~~~~~~h~~~~~~  505 (520)
                      .+.. ..+..+++.+...|+.++...+......+              ...+...+..++..+++.+..
T Consensus       347 ~l~~-~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~  414 (526)
T PF01602_consen  347 YLSE-LSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREK  414 (526)
T ss_dssp             HHHH-C--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHH
T ss_pred             HHHh-ccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHH
Confidence            6633 24677999999999999876554333222              123445555555556555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.34  E-value=5.1e-06  Score=72.28  Aligned_cols=148  Identities=17%  Similarity=0.105  Sum_probs=115.2

Q ss_pred             HHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 010019          361 RCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM  440 (520)
Q Consensus       361 ~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~  440 (520)
                      .+.+.+....+.+..+....-|+|.|-.|.|-..+.+..+++.++..|.  ..+..+++.+.+.|+|+|. ++.|++.|.
T Consensus        20 ~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~--e~ne~LvefgIgglCNlC~-d~~n~~~I~   96 (173)
T KOG4646|consen   20 HLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLE--EQNELLVEFGIGGLCNLCL-DKTNAKFIR   96 (173)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhh--cccHHHHHHhHHHHHhhcc-ChHHHHHHH
Confidence            3333333334568889999999999999999999999999999999998  6789999999999999997 899999999


Q ss_pred             hcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHc
Q 010019          441 EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRDL  513 (520)
Q Consensus       441 ~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~L  513 (520)
                      +++|++.++..+..+  ...+...|..++..|.-++...++.++.-.+...+.+-.... -+-..-|+++|.+-
T Consensus        97 ea~g~plii~~lssp--~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~  168 (173)
T KOG4646|consen   97 EALGLPLIIFVLSSP--PEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKH  168 (173)
T ss_pred             HhcCCceEEeecCCC--hHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            999999999999765  345667888899999777788888888766665554443111 12234466666553

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.34  E-value=3.7e-06  Score=73.15  Aligned_cols=148  Identities=14%  Similarity=0.177  Sum_probs=119.3

Q ss_pred             HcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCC
Q 010019          310 KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD  389 (520)
Q Consensus       310 ~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~  389 (520)
                      ..+.+..||.-.+..++.+.++....-|.|.|-++-|..-+.+..+++..+..|..    +|..+++.+.+.|.|++-.+
T Consensus        14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e----~ne~LvefgIgglCNlC~d~   89 (173)
T KOG4646|consen   14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEE----QNELLVEFGIGGLCNLCLDK   89 (173)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhc----ccHHHHHHhHHHHHhhccCh
Confidence            44567888888887777788888888899999999999999999999999998876    34489999999999999999


Q ss_pred             chHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010019          390 SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMI  469 (520)
Q Consensus       390 ~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL  469 (520)
                      .|+..|++++|+|.++..+.  +....+...+..+|..|+..+..-+..+.    -+.+++.|..+.      ..++.-.
T Consensus        90 ~n~~~I~ea~g~plii~~ls--sp~e~tv~sa~~~l~~l~~~~Rt~r~ell----~p~Vv~~v~r~~------~s~s~~~  157 (173)
T KOG4646|consen   90 TNAKFIREALGLPLIIFVLS--SPPEITVHSAALFLQLLEFGERTERDELL----SPAVVRTVQRWR------ESKSHDE  157 (173)
T ss_pred             HHHHHHHHhcCCceEEeecC--CChHHHHHHHHHHHHHhcCcccchhHHhc----cHHHHHHHHHHH------HHhhHHH
Confidence            99999999999999999998  55677888899999999987766666654    366676665432      2233345


Q ss_pred             HHHh
Q 010019          470 RNLV  473 (520)
Q Consensus       470 ~nL~  473 (520)
                      +||+
T Consensus       158 rnLa  161 (173)
T KOG4646|consen  158 RNLA  161 (173)
T ss_pred             HHHH
Confidence            6664

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.33  E-value=3.5e-05  Score=79.38  Aligned_cols=172  Identities=17%  Similarity=0.233  Sum_probs=130.5

Q ss_pred             hHHHHHhcCCHHHHHHHHhcCCh--HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHH
Q 010019          253 VKESYMELKIDELILEILSRQRN--DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSL  330 (520)
Q Consensus       253 nr~~i~~~g~i~~Lv~lL~~~~~--~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~  330 (520)
                      .++.|...|++..|+.++.+...  .+...+.++|-.+.... +          ...++..| +..++.+-+.....+..
T Consensus       172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae-N----------~d~va~~~-~~~Il~lAK~~e~~e~a  239 (832)
T KOG3678|consen  172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE-N----------RDRVARIG-LGVILNLAKEREPVELA  239 (832)
T ss_pred             hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh-h----------hhHHhhcc-chhhhhhhhhcCcHHHH
Confidence            35677778999999999998754  45666888887665432 2          22455444 66777776654446788


Q ss_pred             HHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCCchHHHHHhcCCHHHHHHH
Q 010019          331 ISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSDSNKSAIIENGGMDKLIVV  407 (520)
Q Consensus       331 ~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La--~~~~~k~~Iv~~g~l~~Lv~l  407 (520)
                      ...++.|.+|- ..++.|+++++.||++.++--.+..    ++.++++|.-+|+|++  +..+.+..|++..+.+.|.-+
T Consensus       240 R~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt----~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~L  315 (832)
T KOG3678|consen  240 RSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRT----DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPL  315 (832)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccC----CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhh
Confidence            88999999998 6788999999999999987766653    3589999999999998  556788889998888888877


Q ss_pred             HhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010019          408 SARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG  443 (520)
Q Consensus       408 L~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G  443 (520)
                      -.  +.+.-.+-+||-+.+.|+. +.+.-..+...|
T Consensus       316 A~--skDel~R~~AClAV~vlat-~KE~E~~VrkS~  348 (832)
T KOG3678|consen  316 AF--SKDELLRLHACLAVAVLAT-NKEVEREVRKSG  348 (832)
T ss_pred             hc--chHHHHHHHHHHHHhhhhh-hhhhhHHHhhcc
Confidence            65  6788889999999999985 445444554444

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.28  E-value=0.00018  Score=78.47  Aligned_cols=297  Identities=16%  Similarity=0.135  Sum_probs=186.6

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      .+..+...+.+       +++.....|+-.+.++.+.  +++   .+... .+|.|..+|.+.   ++.+...|+..+..
T Consensus       115 l~~~v~~ll~~-------~~~~VRk~A~~~l~~i~~~--~p~---~~~~~-~~~~l~~lL~d~---~~~V~~~a~~~l~~  178 (526)
T PF01602_consen  115 LIPDVIKLLSD-------PSPYVRKKAALALLKIYRK--DPD---LVEDE-LIPKLKQLLSDK---DPSVVSAALSLLSE  178 (526)
T ss_dssp             HHHHHHHHHHS-------SSHHHHHHHHHHHHHHHHH--CHC---CHHGG-HHHHHHHHTTHS---SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-------CchHHHHHHHHHHHHHhcc--CHH---HHHHH-HHHHHhhhccCC---cchhHHHHHHHHHH
Confidence            34455666665       5666667788888888774  444   22233 689999999764   78888888888888


Q ss_pred             h-hcccccchhHHhcCCcHHHHHHHhc--CCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHH
Q 010019          203 L-VHDVQSTETFRTGGGPKLLVNILID--GNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQ  279 (520)
Q Consensus       203 l-~~~~~~~~~i~~~ggi~~Lv~lL~~--~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~  279 (520)
                      + .++     .... ..++.+++.|.+  ...++..+...++.+...+...+.....   ...++.+..+|++.+..++-
T Consensus       179 i~~~~-----~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~  249 (526)
T PF01602_consen  179 IKCND-----DSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVY  249 (526)
T ss_dssp             HHCTH-----HHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HccCc-----chhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHH
Confidence            7 222     1111 334555555432  3567899999999998877655444421   45678888888876668888


Q ss_pred             HHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHH
Q 010019          280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDAL  359 (520)
Q Consensus       280 ~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~L  359 (520)
                      +++.++..+.....               .-..++++|+.+|. .++++++--++.+|..++...  . ..+.  .....
T Consensus       250 e~~~~i~~l~~~~~---------------~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~--~-~~v~--~~~~~  308 (526)
T PF01602_consen  250 EAIRLIIKLSPSPE---------------LLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSN--P-PAVF--NQSLI  308 (526)
T ss_dssp             HHHHHHHHHSSSHH---------------HHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHC--H-HHHG--THHHH
T ss_pred             HHHHHHHHhhcchH---------------HHHhhHHHHHHHhh-cccchhehhHHHHHHHhhccc--c-hhhh--hhhhh
Confidence            88888887775321               11246899999998 456778888889999988543  2 2222  33455


Q ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Q 010019          360 LRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA  439 (520)
Q Consensus       360 l~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i  439 (520)
                      +..+....   +..+...++.+|..++. ++|...|     ++.|...+.. ..++.+++.++.+|..++.+.+......
T Consensus       309 ~~~l~~~~---d~~Ir~~~l~lL~~l~~-~~n~~~I-----l~eL~~~l~~-~~d~~~~~~~i~~I~~la~~~~~~~~~~  378 (526)
T PF01602_consen  309 LFFLLYDD---DPSIRKKALDLLYKLAN-ESNVKEI-----LDELLKYLSE-LSDPDFRRELIKAIGDLAEKFPPDAEWY  378 (526)
T ss_dssp             HHHHHCSS---SHHHHHHHHHHHHHH---HHHHHHH-----HHHHHHHHHH-C--HHHHHHHHHHHHHHHHHHGSSHHHH
T ss_pred             hheecCCC---ChhHHHHHHHHHhhccc-ccchhhH-----HHHHHHHHHh-ccchhhhhhHHHHHHHHHhccCchHHHH
Confidence            55666322   35899999999999884 3344443     4566676731 3477899999999999886554333322


Q ss_pred             HhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHH
Q 010019          440 MEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKL  482 (520)
Q Consensus       440 ~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~  482 (520)
                           ++.+++++..  +...+..++...++++..++++.+..
T Consensus       379 -----v~~l~~ll~~--~~~~~~~~~~~~i~~ll~~~~~~~~~  414 (526)
T PF01602_consen  379 -----VDTLLKLLEI--SGDYVSNEIINVIRDLLSNNPELREK  414 (526)
T ss_dssp             -----HHHHHHHHHC--TGGGCHCHHHHHHHHHHHHSTTTHHH
T ss_pred             -----HHHHHHhhhh--ccccccchHHHHHHHHhhcChhhhHH
Confidence                 3445555543  12333445555555555555554443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.22  E-value=1.3e-06  Score=60.93  Aligned_cols=40  Identities=35%  Similarity=0.457  Sum_probs=37.6

Q ss_pred             CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019          388 SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (520)
Q Consensus       388 ~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa  429 (520)
                      +++++..|++.|++|.|+++|+  +.++.++++|+|+|+||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLK--SPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHc--CCCHHHHHHHHHHHHHHh
Confidence            4678999999999999999999  789999999999999998

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=0.00083  Score=69.20  Aligned_cols=250  Identities=14%  Similarity=0.176  Sum_probs=177.4

Q ss_pred             chhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcC-----C----hhhHHHHHhcCCHHHHHHHHhcCCh-----
Q 010019          210 TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG-----N----EVVKESYMELKIDELILEILSRQRN-----  275 (520)
Q Consensus       210 ~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~-----~----e~nr~~i~~~g~i~~Lv~lL~~~~~-----  275 (520)
                      .+.+++.+|++.++++|.  .++.++...++..+..+.-.     +    +.--+.+++.+++++|+.-+.+-+.     
T Consensus       118 Yp~lveln~V~slL~LLg--HeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkee  195 (536)
T KOG2734|consen  118 YPILVELNAVQSLLELLG--HENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEE  195 (536)
T ss_pred             HHHHHHhccHHHHHHHhc--CCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhh
Confidence            367788999999999997  45677777888888777521     1    1234577888999999999987544     


Q ss_pred             -HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcC-CChhHHHHHHHHHHHhc-cChhhHHHHHh
Q 010019          276 -DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAG-LSSPSLISASIALKAVA-VNDEICKSVAE  352 (520)
Q Consensus       276 -~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~-~~~~~~~~a~~aL~~La-~~~e~~~~i~~  352 (520)
                       .-+-++...+-||..-+.         +.+..+++.|.+.-|+.-+... +-..-+..+.-.|+-+. .+++++..+..
T Consensus       196 a~gv~~~L~vveNlv~~r~---------~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~  266 (536)
T KOG2734|consen  196 ADGVHNTLAVVENLVEVRP---------AICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP  266 (536)
T ss_pred             hhhhHHHHHHHHHHHhccH---------HHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC
Confidence             333445566667765432         3456778878777777755443 21223445555555555 45678999999


Q ss_pred             cCChHHHHHHHhccCC----CC-cHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 010019          353 NGGIDALLRCIDDSGL----QG-NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITV  427 (520)
Q Consensus       353 ~Ggv~~Ll~lL~~~~~----~~-~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~n  427 (520)
                      ..||..+++-+.-+..    .. ..++.++-..+|+.+-..++||..++...|++...-+|+ +  ...-+..+..+|-.
T Consensus       267 l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr-~--Kk~sr~SalkvLd~  343 (536)
T KOG2734|consen  267 LDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLR-E--KKVSRGSALKVLDH  343 (536)
T ss_pred             cccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHH-H--HHHhhhhHHHHHHH
Confidence            9999999988754311    11 247889999999999999999999999999997777776 2  34556778899998


Q ss_pred             HhcCCH--HHHHHHHhcCcHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHh
Q 010019          428 LSLRSP--ENAARAMEAGSGDLAIQAMLKFP--------NAQQLQRSSCFMIRNLV  473 (520)
Q Consensus       428 La~~~~--~~~~~i~~~G~i~~lv~~L~~~~--------~~~~vqk~A~~aL~nL~  473 (520)
                      ...+.+  +++..+++.+|...+.-+..+-|        ....+-+..|+.|+.+-
T Consensus       344 am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~  399 (536)
T KOG2734|consen  344 AMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLL  399 (536)
T ss_pred             HHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHH
Confidence            888776  89999999999888776643222        33556677777777664

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.17  E-value=4.5e-06  Score=58.20  Aligned_cols=40  Identities=28%  Similarity=0.388  Sum_probs=37.1

Q ss_pred             CHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019          432 SPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV  473 (520)
Q Consensus       432 ~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~  473 (520)
                      +|++++.+++.|+++.|+++|.  +.+..++++|+|+|+||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLK--SPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHc--CCCHHHHHHHHHHHHHHh
Confidence            5789999999999999999996  478999999999999996

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=0.0028  Score=71.24  Aligned_cols=428  Identities=14%  Similarity=0.082  Sum_probs=253.0

Q ss_pred             CCCcchhhhhhHHHHHHHHH---HHHhhcCCChhHHHHHHHHHH-hhcCcc-cCCc---------------cccC-CC--
Q 010019           55 MGPPKTVRTISQEAFDEVVK---ENMEDLGMEPTEALQDAIQTL-SLQGVD-LSGI---------------VKCV-PG--  111 (520)
Q Consensus        55 ~~~~~~~~~isQetfDe~V~---eni~~~~m~p~eal~~aI~qf-~~qgvd-ls~i---------------~~~~-~~--  111 (520)
                      |=-|+.+|...-|+-|++.+   .|+|.=.|.-|-+-|.-.-+| +.|-.. -++-               .|.. -|  
T Consensus      1594 lLTPyiAr~Lk~e~~~~iLk~LNsN~E~Py~IWNn~TRaELLeFve~Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~i 1673 (2235)
T KOG1789|consen 1594 LLTPYIARCLKLETNDMVLKTLNSNMENPYMIWNNGTRAELLEFVERQRACQTSNGPTDELYGAEFEYSVHKKELIVGDI 1673 (2235)
T ss_pred             hccHHHHHHHHHHHHHHHHHHhhcCCCCceeeecCccHHHHHHHHHHHHhccCCCCCchhhccceeeehhhccceeeeeE
Confidence            33457788888888887765   688888899888887777777 555321 1111               0110 00  


Q ss_pred             --------CCC---CCCCcHHHHHHHHHHHhhcCC-------------------C----CCChhhHHHHHHHHHHHHHHh
Q 010019          112 --------ESS---LKDNPLIQSLERLKQLDLNSK-------------------D----KFSDEDLNEMMGLFDKLIELC  157 (520)
Q Consensus       112 --------~~~---~~~~~~~~~l~~L~~~l~~~~-------------------~----~~~~~d~~~~~~al~~L~~l~  157 (520)
                              +..   .+..=+...++.+++......                   +    +..-...+.+.-+|..|+++.
T Consensus      1674 firVYNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli 1753 (2235)
T KOG1789|consen 1674 FIRVYNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGSEAHGDSLPTETKVLMTLTALANLV 1753 (2235)
T ss_pred             EEEeecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCccccccchhhhhcccchhhhcCCCChHHHHHHHHHHHHHHH
Confidence                    000   011112234444433221110                   0    001112345667899999998


Q ss_pred             cCCCChhhHHHH----HhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCCh
Q 010019          158 GGNEGSVNAAVA----TKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDP  233 (520)
Q Consensus       158 ~~~~~~~~r~~i----~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~  233 (520)
                      +.  ++.-...+    .--|-.|.+..+++..  ++..++.-||+.+.-++..++.-..+..++.+-.|+.+|.+.   +
T Consensus      1754 ~~--nPdlasvfgSe~~lig~F~l~~~~lr~~--~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~---P 1826 (2235)
T KOG1789|consen 1754 SA--NPDLASVFGSEILLIGNFPLLITYLRCR--KHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQ---P 1826 (2235)
T ss_pred             hh--CcchhhhccchhhhhcccHHHHHHHHHc--CCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcC---h
Confidence            86  55322222    2237788888888876  466788888999888776666667888889888899999754   5


Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCC--cchhhhh---hchHHHH
Q 010019          234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDD--DQVVASQ---VYGYARR  307 (520)
Q Consensus       234 ~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd--~~v~~~~---a~~~a~~  307 (520)
                      ...+.++.+|..+++..+-. ..-++.|++..+.+++-..+. .....++..|..|..+.-  +||..--   -.+.-..
T Consensus      1827 S~R~~vL~vLYAL~S~~~i~-keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d 1905 (2235)
T KOG1789|consen 1827 SMRARVLDVLYALSSNGQIG-KEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFAD 1905 (2235)
T ss_pred             HHHHHHHHHHHHHhcCcHHH-HHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHH
Confidence            55566777787777654444 444577888888887765443 333447778888887653  2221000   0000001


Q ss_pred             HHHcCCHHHHHHHHhcCC-ChhHH------HHHHHHHHHhccC--------hhh------------------------HH
Q 010019          308 FAKIGIARALVHSLHAGL-SSPSL------ISASIALKAVAVN--------DEI------------------------CK  348 (520)
Q Consensus       308 i~~~g~l~~Lv~lL~~~~-~~~~~------~~a~~aL~~La~~--------~e~------------------------~~  348 (520)
                      +.. ++=+..+..+.+.+ ++++.      ......+..++..        ++.                        .+
T Consensus      1906 ~~R-D~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R 1984 (2235)
T KOG1789|consen 1906 SLR-DSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINR 1984 (2235)
T ss_pred             HHh-cCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhH
Confidence            111 22255566655433 33322      1122223333210        000                        00


Q ss_pred             HHHh-------------cCChHHHHHHHhccCCCC-cHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCC
Q 010019          349 SVAE-------------NGGIDALLRCIDDSGLQG-NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD  414 (520)
Q Consensus       349 ~i~~-------------~Ggv~~Ll~lL~~~~~~~-~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~  414 (520)
                      .++.             .|-++.++++|.....++ -.++...|+-.  .+..+|.-.+++...|-+|.++.+|.  ..+
T Consensus      1985 ~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~--L~r~hP~LADqip~LGylPK~~~Am~--~~n 2060 (2235)
T KOG1789|consen 1985 EFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVE--LVRHHPNLADQLPSLGYLPKFCTAMC--LQN 2060 (2235)
T ss_pred             HHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHH--HHHhCcchhhhCCCccchHHHHHHHH--hcC
Confidence            0110             022334455555432222 13444444333  34578888899999999999999997  334


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHhCCHHHHHH
Q 010019          415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENRKLLLSNGVEKLIR  493 (520)
Q Consensus       415 ~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-~~e~~~~l~~~G~~~lL~  493 (520)
                      ..+-..|..+|..|+. +.-.+.++.....+..++..|++.++   ..--||.+|..+..+ ..+.....+..|..+.|.
T Consensus      2061 ~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~~~---~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL 2136 (2235)
T KOG1789|consen 2061 TSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQPS---LMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLL 2136 (2235)
T ss_pred             CcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhcch---HHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHH
Confidence            4556889999999996 66667777776677779999987543   444799999988765 567888889999999998


Q ss_pred             HHHHhC
Q 010019          494 QAKENH  499 (520)
Q Consensus       494 ~~~~~h  499 (520)
                      +++.-.
T Consensus      2137 ~LLd~~ 2142 (2235)
T KOG1789|consen 2137 QLLDSS 2142 (2235)
T ss_pred             HHhccc
Confidence            887543

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.12  E-value=0.00018  Score=77.12  Aligned_cols=309  Identities=14%  Similarity=0.085  Sum_probs=178.2

Q ss_pred             HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHH--HH--hcCcHHHHHHHHhhcccCcHHHHHHH
Q 010019          121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAV--AT--KNGGVELVCSICYKMRCGSKRVLDSC  196 (520)
Q Consensus       121 ~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~--i~--~~Gaip~Lv~lL~~~~~~~~~~~~~a  196 (520)
                      .+.+..|.+.+.+       .|...+-.|+..|.+.|..  +.+.-+.  .-  -.=.+|.++.+.++.   .+.+...|
T Consensus       127 pelLp~L~~~L~s-------~d~n~~EgA~~AL~KIcED--sa~~lds~~~~rpl~~mipkfl~f~~h~---spkiRs~A  194 (885)
T KOG2023|consen  127 PELLPQLCELLDS-------PDYNTCEGAFGALQKICED--SAQFLDSDVLTRPLNIMIPKFLQFFKHP---SPKIRSHA  194 (885)
T ss_pred             hhHHHHHHHHhcC-------CcccccchhHHHHHHHHhh--hHHHHhhhcccCchHHhHHHHHHHHhCC---ChhHHHHH
Confidence            4568888888887       5656666788888899985  3321111  00  023578888888875   66776666


Q ss_pred             HHHHHHhhcccccchhHHhcCCcHHHHHHH--hcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh--cCCHHHHHHHHhc
Q 010019          197 LKTMALLVHDVQSTETFRTGGGPKLLVNIL--IDGNEDPEILNSGFAVVAASATGNEVVKESYME--LKIDELILEILSR  272 (520)
Q Consensus       197 l~~La~l~~~~~~~~~i~~~ggi~~Lv~lL--~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~--~g~i~~Lv~lL~~  272 (520)
                      +..+....-.+  .+.+..  .+..+++.|  .....+++++...|.++..+..   .--+.++-  .++++.++..-+.
T Consensus       195 ~~cvNq~i~~~--~qal~~--~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle---vr~dkl~phl~~IveyML~~tqd  267 (885)
T KOG2023|consen  195 VGCVNQFIIIQ--TQALYV--HIDKFLEILFALANDEDPEVRKNVCRALVFLLE---VRPDKLVPHLDNIVEYMLQRTQD  267 (885)
T ss_pred             HhhhhheeecC--cHHHHH--HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH---hcHHhcccchHHHHHHHHHHccC
Confidence            66555444332  233321  234444433  1235678999888888877653   22233432  2566666665566


Q ss_pred             CChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH--cCCHHHHHHHHhcCC-ChhHH-------------------
Q 010019          273 QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK--IGIARALVHSLHAGL-SSPSL-------------------  330 (520)
Q Consensus       273 ~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~--~g~l~~Lv~lL~~~~-~~~~~-------------------  330 (520)
                      ++.++--+||.....++....++.          .+..  ...+|.|++-|.-.. |..++                   
T Consensus       268 ~dE~VALEACEFwla~aeqpi~~~----------~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPR  337 (885)
T KOG2023|consen  268 VDENVALEACEFWLALAEQPICKE----------VLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPR  337 (885)
T ss_pred             cchhHHHHHHHHHHHHhcCcCcHH----------HHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccch
Confidence            566888889999998987664432          1221  245677766554221 11111                   


Q ss_pred             -----------------------------------HHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHH
Q 010019          331 -----------------------------------ISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA  375 (520)
Q Consensus       331 -----------------------------------~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~  375 (520)
                                                         +..+.+|--|+       -+.....++.++-+|+.+..+....+.
T Consensus       338 fhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~~~~W~vr  410 (885)
T KOG2023|consen  338 FHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLSSEEWKVR  410 (885)
T ss_pred             hhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcCcchhhhh
Confidence                                               11111222221       123334456667777665544557889


Q ss_pred             HHHHHHHHHhhC-C-CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHhcCcHHHHHHH
Q 010019          376 RICCSLLSKLAG-S-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR--SPENAARAMEAGSGDLAIQA  451 (520)
Q Consensus       376 ~~al~aL~~La~-~-~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~--~~~~~~~i~~~G~i~~lv~~  451 (520)
                      +.+.-+|+.+|. + +.....+-  .-+|.++++|.  ...|-|+.-+||+|+.-+.-  +.+ ..+... ..+..+++.
T Consensus       411 EagvLAlGAIAEGcM~g~~p~Lp--eLip~l~~~L~--DKkplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~~ll~~  484 (885)
T KOG2023|consen  411 EAGVLALGAIAEGCMQGFVPHLP--ELIPFLLSLLD--DKKPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLEGLLRR  484 (885)
T ss_pred             hhhHHHHHHHHHHHhhhcccchH--HHHHHHHHHhc--cCccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHHHHHHH
Confidence            999999999983 2 11112222  13677888887  67899999999999876521  001 111111 112222222


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHh
Q 010019          452 MLKFPNAQQLQRSSCFMIRNLV  473 (520)
Q Consensus       452 L~~~~~~~~vqk~A~~aL~nL~  473 (520)
                      +-.  ++..||+.||.|.+.+-
T Consensus       485 llD--~NK~VQEAAcsAfAtle  504 (885)
T KOG2023|consen  485 LLD--SNKKVQEAACSAFATLE  504 (885)
T ss_pred             Hhc--ccHHHHHHHHHHHHHHH
Confidence            222  57899999999999884

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=98.09  E-value=1.3e-05  Score=67.15  Aligned_cols=87  Identities=23%  Similarity=0.326  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHH
Q 010019          418 LQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKE  497 (520)
Q Consensus       418 ~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~  497 (520)
                      +...+.+|+|||.+++.++..+.+.||++.++....-...+|-+.++|.|+||||+.+|++++..+.+......      
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~~~~~------   76 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLEPQGV------   76 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhccccCC------
Confidence            56678999999999999999999999999999998777789999999999999999999999877665322111      


Q ss_pred             hCcchHHHHHHHHHHcCCCC
Q 010019          498 NHEICKDAATDALRDLGLDD  517 (520)
Q Consensus       498 ~h~~~~~~a~aALr~Lg~~~  517 (520)
                             +-..+|+.+|++.
T Consensus        77 -------~~~~~L~~~G~~v   89 (102)
T PF09759_consen   77 -------ADNEELEELGLEV   89 (102)
T ss_pred             -------cchHHHHHcCCeE
Confidence                   3456677777654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.08  E-value=0.0041  Score=63.98  Aligned_cols=306  Identities=9%  Similarity=0.067  Sum_probs=191.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHHh-------cCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHh
Q 010019          143 LNEMMGLFDKLIELCGGNEGSVNAAVATK-------NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT  215 (520)
Q Consensus       143 ~~~~~~al~~L~~l~~~~~~~~~r~~i~~-------~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~  215 (520)
                      .+.+.-.+.-+-.+.++  +. .|..+.+       .-..+..+.+|...   +.-+.......++.+..-..   ..+.
T Consensus        80 dd~v~yvL~li~DmLs~--d~-sr~~lf~~~a~~~k~~~~~~fl~ll~r~---d~~iv~~~~~Ils~la~~g~---~~~~  150 (442)
T KOG2759|consen   80 DDTVQYVLTLIDDMLSE--DR-SRVDLFHDYAHKLKRTEWLSFLNLLNRQ---DTFIVEMSFRILSKLACFGN---CKME  150 (442)
T ss_pred             HHHHHHHHHHHHHHHhh--Cc-hHHHHHHHHHHhhhccchHHHHHHHhcC---ChHHHHHHHHHHHHHHHhcc---cccc
Confidence            34455566666666663  32 2333332       12355667777653   43333323333433321110   1111


Q ss_pred             cCC----cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHh-cCCh-HHHHHHHHHHHHhc
Q 010019          216 GGG----PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS-RQRN-DSIQSLYDAIRVLL  289 (520)
Q Consensus       216 ~gg----i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~-~~~~-~~~~~a~~aL~~Ls  289 (520)
                      .+-    ...|-..|.+ +.+.+-...+.++|..+.. .++.|..++.+.++..++..+. ++.. .++=..+-.++-|+
T Consensus       151 ~~e~~~~~~~l~~~l~~-~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLt  228 (442)
T KOG2759|consen  151 LSELDVYKGFLKEQLQS-STNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLT  228 (442)
T ss_pred             chHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhh
Confidence            111    1223344554 3445555567778877754 5678999999999999999994 3333 55556777888888


Q ss_pred             CCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccCh-------hhHHHHHhcCChHHHHHH
Q 010019          290 TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-------EICKSVAENGGIDALLRC  362 (520)
Q Consensus       290 ~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~-------e~~~~i~~~Ggv~~Ll~l  362 (520)
                      .+...          |+.+...+.|+.|.++++..+...+.+-++.++.|+....       +.+..++..+ ++..++.
T Consensus       229 Fn~~~----------ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~  297 (442)
T KOG2759|consen  229 FNPHA----------AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQS  297 (442)
T ss_pred             cCHHH----------HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHH
Confidence            76421          3344456899999999998665567777888999998443       4455566544 5666666


Q ss_pred             HhccCCCCcHHHHHHHHHHH-------HHhhCCCchHHHHHh--------------------------cCCHHHHHHHHh
Q 010019          363 IDDSGLQGNKTVARICCSLL-------SKLAGSDSNKSAIIE--------------------------NGGMDKLIVVSA  409 (520)
Q Consensus       363 L~~~~~~~~~~v~~~al~aL-------~~La~~~~~k~~Iv~--------------------------~g~l~~Lv~lL~  409 (520)
                      |....- .+.++....-.+-       ..|++.|+-+..+..                          ...+..|+.+|+
T Consensus       298 L~~rky-sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe  376 (442)
T KOG2759|consen  298 LEERKY-SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLE  376 (442)
T ss_pred             HHhcCC-CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHh
Confidence            654221 1224443332221       222333343333321                          124778899998


Q ss_pred             ccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019          410 RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (520)
Q Consensus       410 ~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~  474 (520)
                      . +.+|.+..-||.=|.......|+-+..+..-||=+.++++|. | +++.|..+|..|+.-|-.
T Consensus       377 ~-s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Lln-h-~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  377 T-SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLN-H-EDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             c-CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhc-C-CCchHHHHHHHHHHHHHh
Confidence            4 457999999999999999899999999999999999999993 4 689999999999877643

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.0032  Score=71.82  Aligned_cols=340  Identities=12%  Similarity=0.052  Sum_probs=192.8

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcc-cCcHHHHHHHHHHH
Q 010019          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR-CGSKRVLDSCLKTM  200 (520)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~-~~~~~~~~~al~~L  200 (520)
                      +.+..|.....|       .+....-.|+..|..+...   ..++    ..+-++-+..++...- ..+..+...+++++
T Consensus       118 ell~~L~q~~~S-------~~~~~rE~al~il~s~~~~---~~~~----~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~  183 (1075)
T KOG2171|consen  118 ELLQFLFQSTKS-------PNPSLRESALLILSSLPET---FGNT----LQPHLDDLLRLFSQTMTDPSSPVRVAAVRAL  183 (1075)
T ss_pred             HHHHHHHHHhcC-------CCcchhHHHHHHHHhhhhh---hccc----cchhHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence            467777777666       5665566667666665542   1111    2345556666665432 22334776777777


Q ss_pred             HHhhcccc-cchhHHh-cCCcHHHHHHHhcC--CCChHHHHHHHHHHHHHhcCChhh-HHHHHhcCCHHHHHHHHhcC--
Q 010019          201 ALLVHDVQ-STETFRT-GGGPKLLVNILIDG--NEDPEILNSGFAVVAASATGNEVV-KESYMELKIDELILEILSRQ--  273 (520)
Q Consensus       201 a~l~~~~~-~~~~i~~-~ggi~~Lv~lL~~~--~~~~~v~~~a~~~L~~~~~~~e~n-r~~i~~~g~i~~Lv~lL~~~--  273 (520)
                      .+.....+ ++..+.. ..-+|.++..|...  .++.+....++.++-.++...+.. |..+.  .++...+.+.++.  
T Consensus       184 ~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l  261 (1075)
T KOG2171|consen  184 GAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKEL  261 (1075)
T ss_pred             HHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccc
Confidence            66553322 1222222 24567777776543  345556677777777765433322 22221  3556666666654  


Q ss_pred             ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH--cCCHHHHHHHHhcCCCh---------------hHHHHHHHH
Q 010019          274 RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK--IGIARALVHSLHAGLSS---------------PSLISASIA  336 (520)
Q Consensus       274 ~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~--~g~l~~Lv~lL~~~~~~---------------~~~~~a~~a  336 (520)
                      +++++..|...|..++... +        .-.|....  .-.++.++..+....+.               .-...|-.+
T Consensus       262 ~~~~R~~ALe~ivs~~e~A-p--------~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~  332 (1075)
T KOG2171|consen  262 ENSIRHLALEFLVSLSEYA-P--------AMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQA  332 (1075)
T ss_pred             cHHHHHHHHHHHHHHHHhh-H--------HHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHH
Confidence            3377777888888777541 1        11112211  12355555555433211               011223444


Q ss_pred             HHHhccChhhHHHHHhcC---ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccC
Q 010019          337 LKAVAVNDEICKSVAENG---GIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFS  412 (520)
Q Consensus       337 L~~La~~~e~~~~i~~~G---gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~  412 (520)
                      |-.||.         ..|   ..++++..+.....+.++.-.++++-+|+.++ |+.+.-..... ..++.++..|+  .
T Consensus       333 lDrlA~---------~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~--D  400 (1075)
T KOG2171|consen  333 LDRLAL---------HLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLN--D  400 (1075)
T ss_pred             HHHHHh---------cCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcC--C
Confidence            444442         223   25666666655444456788999999999998 44433333322 34566666666  6


Q ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHhCCHHHH
Q 010019          413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENRKLLLSNGVEKL  491 (520)
Q Consensus       413 ~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-~~e~~~~l~~~G~~~l  491 (520)
                      .+|.|+..||-+|..++..=+...+.-...-.++.++..|. .+.++.||..|+.++-|+... .++.....++.=..+.
T Consensus       401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld-~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~  479 (1075)
T KOG2171|consen  401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLD-STQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKK  479 (1075)
T ss_pred             CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhc-ccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            68999999999999999754444444444446677787775 467899999999999999753 4455555555333335


Q ss_pred             HHHHHHhC
Q 010019          492 IRQAKENH  499 (520)
Q Consensus       492 L~~~~~~h  499 (520)
                      +..+....
T Consensus       480 l~~L~~~~  487 (1075)
T KOG2171|consen  480 LLLLLQSS  487 (1075)
T ss_pred             HHHHhcCC
Confidence            54444443

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=0.0034  Score=68.69  Aligned_cols=304  Identities=11%  Similarity=0.097  Sum_probs=185.1

Q ss_pred             HHHHHHHHHHhcCCCChhhHHHHHhc-CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhc----CCcHH
Q 010019          147 MGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG----GGPKL  221 (520)
Q Consensus       147 ~~al~~L~~l~~~~~~~~~r~~i~~~-Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~----ggi~~  221 (520)
                      .+.|+.|.=.|..   .......-++ .++-.++.-.++.. ++..+...|+++|.+-+.=.  +.-|-..    =..+.
T Consensus       148 ~~slealGyice~---i~pevl~~~sN~iLtaIv~gmrk~e-~s~~vRLaa~~aL~nsLef~--~~nF~~E~ern~iMqv  221 (859)
T KOG1241|consen  148 ESSLEALGYICED---IDPEVLEQQSNDILTAIVQGMRKEE-TSAAVRLAALNALYNSLEFT--KANFNNEMERNYIMQV  221 (859)
T ss_pred             HHHHHHHHHHHcc---CCHHHHHHHHhHHHHHHHhhccccC-CchhHHHHHHHHHHHHHHHH--HHhhccHhhhceeeee
Confidence            5577778888874   3333554443 34445555554432 46677777888886543110  0011001    12334


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCC---------
Q 010019          222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD---------  292 (520)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~d---------  292 (520)
                      +++.-.  +.+.+++..|+.+|-.+.+-+...-+..+.......-+..+++..+++--.+...-+++|..+         
T Consensus       222 vcEatq--~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e  299 (859)
T KOG1241|consen  222 VCEATQ--SPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGE  299 (859)
T ss_pred             eeeccc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444433  567899999999998887766666667777777888889999877766666665555555321         


Q ss_pred             ---CcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC-Ch-----hHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHH
Q 010019          293 ---DDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SS-----PSLISASIALKAVAVNDEICKSVAENGGIDALLRCI  363 (520)
Q Consensus       293 ---d~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~-~~-----~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL  363 (520)
                         .+.+|.  .+-+++.-. .+.+|.|+++|.... +.     ...+.|-.+|.-++       ..++...+++++.++
T Consensus       300 ~~d~~~~p~--~~~fa~~a~-~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A-------~~~~D~Iv~~Vl~Fi  369 (859)
T KOG1241|consen  300 AVDQGLPPS--SKYFARQAL-QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFA-------QCVGDDIVPHVLPFI  369 (859)
T ss_pred             HhhcCCCch--hhHHHHHHH-hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHH-------HHhcccchhhhHHHH
Confidence               122221  112222222 368999999998732 21     22233333333232       123344567888888


Q ss_pred             hccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHH-HHHh
Q 010019          364 DDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAA-RAME  441 (520)
Q Consensus       364 ~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~-~i~~  441 (520)
                      ..+...+|..=.+.+.-+++.+- +.+..+..=.-.+++|.++.+|.  .++-.++.-+.|+|..++...|+.+. ....
T Consensus       370 ee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~--D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l  447 (859)
T KOG1241|consen  370 EENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS--DPSLWVKDTAAWTLGRIADFLPEAIINQELL  447 (859)
T ss_pred             HHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc--CchhhhcchHHHHHHHHHhhchhhcccHhhh
Confidence            76655566667777887887776 44444433333489999999998  55677889999999999976664432 2222


Q ss_pred             cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019          442 AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV  473 (520)
Q Consensus       442 ~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~  473 (520)
                      .+.+..+++-|.   ++|.+-.++||++-+|+
T Consensus       448 ~~~l~~l~~gL~---DePrva~N~CWAf~~La  476 (859)
T KOG1241|consen  448 QSKLSALLEGLN---DEPRVASNVCWAFISLA  476 (859)
T ss_pred             hHHHHHHHHHhh---hCchHHHHHHHHHHHHH
Confidence            344556666564   46788899999999998

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=0.0065  Score=62.84  Aligned_cols=264  Identities=12%  Similarity=0.093  Sum_probs=178.2

Q ss_pred             HHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccc------cc----chhHHhc
Q 010019          147 MGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV------QS----TETFRTG  216 (520)
Q Consensus       147 ~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~------~~----~~~i~~~  216 (520)
                      -..++++.-++.   -|.---.+++.++|+.|+.||...   +.++....+.-+--++.+.      ++    -.++++.
T Consensus       102 hd~IQ~mhvlAt---~PdLYp~lveln~V~slL~LLgHe---NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg  175 (536)
T KOG2734|consen  102 HDIIQEMHVLAT---MPDLYPILVELNAVQSLLELLGHE---NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDG  175 (536)
T ss_pred             HHHHHHHHhhhc---ChHHHHHHHHhccHHHHHHHhcCC---CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhc
Confidence            345666666665   455555889999999999999874   5667666666666655321      11    2445667


Q ss_pred             CCcHHHHHHHhcCCCChHH----HHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCC--hHHHHHHHHHHHHhcC
Q 010019          217 GGPKLLVNILIDGNEDPEI----LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR--NDSIQSLYDAIRVLLT  290 (520)
Q Consensus       217 ggi~~Lv~lL~~~~~~~~v----~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~aL~~Ls~  290 (520)
                      +.++.|+..+.+-+++.+-    ...++..+-|+..-.+...+.+++.|.+..|+.-+....  +.-.+.|...|.-+..
T Consensus       176 ~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq  255 (536)
T KOG2734|consen  176 QVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQ  255 (536)
T ss_pred             cHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhc
Confidence            7888888888776543332    234567777776666667777888887777776554332  2444556666666555


Q ss_pred             CCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC--C------hhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHH
Q 010019          291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--S------SPSLISASIALKAVAVNDEICKSVAENGGIDALLRC  362 (520)
Q Consensus       291 ~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~--~------~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~l  362 (520)
                      +.+.         +.+.+...+|+..|+.-+.-+.  |      .+..++.+..|..+...++|+..++...|+....-+
T Consensus       256 ~s~e---------~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lm  326 (536)
T KOG2734|consen  256 NSDE---------NRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLM  326 (536)
T ss_pred             cCch---------hhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHH
Confidence            4431         2235557789999988876432  2      256678888888888889999999999999877666


Q ss_pred             HhccCCCCcHHHHHHHHHHHHHhhCCC---chHHHHHhcCCHHHHHHHHhcc--------CCCHHHHHHHHHHHHHHhc
Q 010019          363 IDDSGLQGNKTVARICCSLLSKLAGSD---SNKSAIIENGGMDKLIVVSARF--------SDDASVLQEVMSIITVLSL  430 (520)
Q Consensus       363 L~~~~~~~~~~v~~~al~aL~~La~~~---~~k~~Iv~~g~l~~Lv~lL~~~--------~~~~~v~~~a~~aL~nLa~  430 (520)
                      |+.-     ....-.++++|--...++   +++..+++.+|+..+..+--+.        ......-++.|+.|+.|-.
T Consensus       327 lr~K-----k~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  327 LREK-----KVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             HHHH-----HHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence            6641     134567788887776554   5777789999998888754321        1235677889999988754

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.77  E-value=0.00011  Score=61.61  Aligned_cols=67  Identities=16%  Similarity=0.178  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 010019          375 ARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME  441 (520)
Q Consensus       375 ~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~  441 (520)
                      ....+.+|+||+ .++.+++.+.+.||+|.+++.-..-..+|-++|+|.++|.||+.++++|++.|.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            456788999998 6789999999999999999987655668999999999999999999999988765

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.73  E-value=0.0045  Score=64.58  Aligned_cols=255  Identities=13%  Similarity=0.062  Sum_probs=168.1

Q ss_pred             HHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCC
Q 010019          153 LIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNED  232 (520)
Q Consensus       153 L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~  232 (520)
                      |-++.++  .+.-+....-.-.++.+..++=+   +++++.+.++..+--+..+...-..+.+.+.--.++..|.+...+
T Consensus         7 Lv~l~~~--~p~l~~~~~~~~~~~~i~~~lL~---~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~   81 (371)
T PF14664_consen    7 LVDLLKR--HPTLKYDLVLSFFGERIQCMLLS---DSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKN   81 (371)
T ss_pred             HHHHHHh--CchhhhhhhHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCC
Confidence            3444443  44444444333344444433322   257888888888877777766566677778778888889876666


Q ss_pred             hHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcC
Q 010019          233 PEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG  312 (520)
Q Consensus       233 ~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g  312 (520)
                      ....++|++.++.....+. ..+ .+..|++..++.+.....+.....+..+|.-|+..+-            +.+.+.|
T Consensus        82 ~~ER~QALkliR~~l~~~~-~~~-~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P------------~lv~~~g  147 (371)
T PF14664_consen   82 DVEREQALKLIRAFLEIKK-GPK-EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP------------ELVAECG  147 (371)
T ss_pred             hHHHHHHHHHHHHHHHhcC-Ccc-cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH------------HHHHHcC
Confidence            6666789999988765422 222 2355788899999988766777778889999887652            1455899


Q ss_pred             CHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccC---CCCcH--HHHHHHHHHHHHhhC
Q 010019          313 IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG---LQGNK--TVARICCSLLSKLAG  387 (520)
Q Consensus       313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~---~~~~~--~v~~~al~aL~~La~  387 (520)
                      |+..|++.+-+++ .++....+.++-++..++..++.+...--++.++.-+.+..   ...+.  +....+..++..+-.
T Consensus       148 G~~~L~~~l~d~~-~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr  226 (371)
T PF14664_consen  148 GIRVLLRALIDGS-FSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR  226 (371)
T ss_pred             CHHHHHHHHHhcc-HhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh
Confidence            9999999998854 33667788999999888887776655444666776666541   11122  244555555555443


Q ss_pred             CCchHHHHH--hcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019          388 SDSNKSAII--ENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (520)
Q Consensus       388 ~~~~k~~Iv--~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa  429 (520)
                      +-.+--.+.  +..++.-|+..|.  .+++.+++..+..|..+-
T Consensus       227 sW~GLl~l~~~~~~~lksLv~~L~--~p~~~ir~~Ildll~dll  268 (371)
T PF14664_consen  227 SWPGLLYLSMNDFRGLKSLVDSLR--LPNPEIRKAILDLLFDLL  268 (371)
T ss_pred             cCCceeeeecCCchHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence            322222222  2257888999997  667889998888887664

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.73  E-value=0.00063  Score=70.39  Aligned_cols=182  Identities=17%  Similarity=0.245  Sum_probs=136.6

Q ss_pred             HHHcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010019          308 FAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA  386 (520)
Q Consensus       308 i~~~g~l~~Lv~lL~~~~-~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La  386 (520)
                      |-..|++..|+.++..-. ...+...+...|-.+.+ .+|+..+++.| ...++.+-+.. +.  +++++..++.|.+|-
T Consensus       176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~-e~--~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKER-EP--VELARSVAGILEHMF  250 (832)
T ss_pred             hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhc-Cc--HHHHHHHHHHHHHHh
Confidence            334589999999998633 23456677777766653 57888899887 66777665432 22  589999999999997


Q ss_pred             C-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHH
Q 010019          387 G-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR-SPENAARAMEAGSGDLAIQAMLKFPNAQQLQRS  464 (520)
Q Consensus       387 ~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~-~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~  464 (520)
                      . +.+....++++||++.++---+  ..+|.+.++|..+|.|+++. ..+..+.+++..+.+.|.-+-  .+.+.-..-.
T Consensus       251 KHSeet~~~Lvaa~~lD~vl~~~r--Rt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA--~skDel~R~~  326 (832)
T KOG3678|consen  251 KHSEETCQRLVAAGGLDAVLYWCR--RTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA--FSKDELLRLH  326 (832)
T ss_pred             hhhHHHHHHHHhhcccchheeecc--cCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh--cchHHHHHHH
Confidence            4 4677788999999999887777  45799999999999999874 345667788888888877544  3456777788


Q ss_pred             HHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC
Q 010019          465 SCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH  499 (520)
Q Consensus       465 A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h  499 (520)
                      ||.|++-|++ +.|.-..+...|-..++.-....|
T Consensus       327 AClAV~vlat-~KE~E~~VrkS~TlaLVEPlva~~  360 (832)
T KOG3678|consen  327 ACLAVAVLAT-NKEVEREVRKSGTLALVEPLVASL  360 (832)
T ss_pred             HHHHHhhhhh-hhhhhHHHhhccchhhhhhhhhcc
Confidence            9999999964 677777777778777776665555

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=97.67  E-value=0.022  Score=60.70  Aligned_cols=308  Identities=13%  Similarity=0.083  Sum_probs=184.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHH--HHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcC---
Q 010019          143 LNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVEL--VCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGG---  217 (520)
Q Consensus       143 ~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~--Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~g---  217 (520)
                      .....+++..+.-.|.+   ..+.+.+..+++|-.  ....++..  .++.+...+|++|..-+..-  +.-|-.++   
T Consensus       148 ~~~k~~sl~~~gy~ces---~~Pe~li~~sN~il~aiv~ga~k~e--t~~avRLaaL~aL~dsl~fv--~~nf~~E~erN  220 (858)
T COG5215         148 VSGKCESLGICGYHCES---EAPEDLIQMSNVILFAIVMGALKNE--TTSAVRLAALKALMDSLMFV--QGNFCYEEERN  220 (858)
T ss_pred             hHhHHHHHHHHHHHhhc---cCHHHHHHHhhHHHHHHHHhhcccC--chHHHHHHHHHHHHHHHHHH--HHhhcchhhhc
Confidence            45568899999999984   334566666655432  22334443  46777888888887622110  01111111   


Q ss_pred             -CcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCC----
Q 010019          218 -GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD----  292 (520)
Q Consensus       218 -gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~d----  292 (520)
                       -.+.+++.-+  ..+.++|..++.++..+..-+...-+.+++.-....+...+++.++++-..|...-+.+|..+    
T Consensus       221 y~mqvvceatq--~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~  298 (858)
T COG5215         221 YFMQVVCEATQ--GNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGE  298 (858)
T ss_pred             hhheeeehhcc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhH
Confidence             1333444433  467899999999998877655555567777666777788888877766555554443444321    


Q ss_pred             -----CcchhhhhhchHHHHHHHcCCHHHHHHHHhc-CCCh-----hHHHHHHHHHHHhccChhhHHHHHhcCChHHHHH
Q 010019          293 -----DDQVVASQVYGYARRFAKIGIARALVHSLHA-GLSS-----PSLISASIALKAVAVNDEICKSVAENGGIDALLR  361 (520)
Q Consensus       293 -----d~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~-~~~~-----~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~  361 (520)
                           -+.+|. +.|..++.-++ +.+|.|+.||.. +.|.     .+-..|..+|--.+.   +    .....+.+++.
T Consensus       299 ~e~~~~pe~p~-qn~~fa~aav~-dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq---~----~gd~i~~pVl~  369 (858)
T COG5215         299 MEDKYLPEVPA-QNHGFARAAVA-DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ---L----KGDKIMRPVLG  369 (858)
T ss_pred             HHHhhcccCch-hhcchHHHHHH-HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH---H----hhhHhHHHHHH
Confidence                 123333 55666655442 589999999987 3332     222333333322221   1    11122456777


Q ss_pred             HHhccCCCCcHHHHHHHHHHHHHhhCCC--chHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Q 010019          362 CIDDSGLQGNKTVARICCSLLSKLAGSD--SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA  439 (520)
Q Consensus       362 lL~~~~~~~~~~v~~~al~aL~~La~~~--~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i  439 (520)
                      ........++..=.+.+.-+++.+...+  +....++. .++|.+...|.  ...-.+++-+.|++..|+.    ....+
T Consensus       370 FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~-qalp~i~n~m~--D~~l~vk~ttAwc~g~iad----~va~~  442 (858)
T COG5215         370 FVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP-QALPGIENEMS--DSCLWVKSTTAWCFGAIAD----HVAMI  442 (858)
T ss_pred             HHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH-hhhHHHHHhcc--cceeehhhHHHHHHHHHHH----HHHHh
Confidence            7766544444556677888888887433  45556665 68999999887  4456788999999999984    23333


Q ss_pred             Hh-cCcHHHHHHH-HHhCCCCHHHHHHHHHHHHHHhhh
Q 010019          440 ME-AGSGDLAIQA-MLKFPNAQQLQRSSCFMIRNLVAR  475 (520)
Q Consensus       440 ~~-~G~i~~lv~~-L~~~~~~~~vqk~A~~aL~nL~~~  475 (520)
                      +. +|-++..+.+ +..-.+++.+..+.||..-|++.+
T Consensus       443 i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h  480 (858)
T COG5215         443 ISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDH  480 (858)
T ss_pred             cCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHh
Confidence            32 3433333333 222236778888999999999754

>PF05536 Neurochondrin: Neurochondrin

Probab=97.64  E-value=0.0033  Score=68.92  Aligned_cols=196  Identities=16%  Similarity=0.127  Sum_probs=132.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCC-----h-hHHHHHHHH
Q 010019          263 DELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS-----S-PSLISASIA  336 (520)
Q Consensus       263 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~-----~-~~~~~a~~a  336 (520)
                      +...+.+|+...++-.-.+...+..++.+++...      ...|.+.++=|.+-|-.+|+++..     + ..+.-+...
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~------~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv   80 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDS------QTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV   80 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhH------HHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence            5567778887764444456667777777655322      122356677678889999987541     2 334445667


Q ss_pred             HHHhccChhhH--HHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCC
Q 010019          337 LKAVAVNDEIC--KSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD  414 (520)
Q Consensus       337 L~~La~~~e~~--~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~  414 (520)
                      |..++..++..  ..++  +-||.|++++....+   .+++..|+.+|..++.+++++.++++.|+++.|++.+..   .
T Consensus        81 L~~f~~~~~~a~~~~~~--~~IP~Lle~l~~~s~---~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~---~  152 (543)
T PF05536_consen   81 LAAFCRDPELASSPQMV--SRIPLLLEILSSSSD---LETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN---Q  152 (543)
T ss_pred             HHHHcCChhhhcCHHHH--HHHHHHHHHHHcCCc---hhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh---C
Confidence            77888776653  4444  348999999998654   379999999999999999999999999999999999973   5


Q ss_pred             HHHHHHHHHHHHHHhcCCHH-----HHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhC
Q 010019          415 ASVLQEVMSIITVLSLRSPE-----NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARN  476 (520)
Q Consensus       415 ~~v~~~a~~aL~nLa~~~~~-----~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~  476 (520)
                      +...+.++.+|.+++.+...     +.+.+.  ..+..+-+.++...+..  .-+.|..|.++-.+.
T Consensus       153 ~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~--~il~~La~~fs~~~~~~--kfell~~L~~~L~~~  215 (543)
T PF05536_consen  153 SFQMEIALNLLLNLLSRLGQKSWAEDSQLLH--SILPSLARDFSSFHGED--KFELLEFLSAFLPRS  215 (543)
T ss_pred             cchHHHHHHHHHHHHHhcchhhhhhhHHHHH--HHHHHHHHHHHhhccch--HHHHHHHHHHhcCcC
Confidence            67789999999998865331     111111  12333444443322222  346788888775544

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.63  E-value=0.00012  Score=50.43  Aligned_cols=39  Identities=31%  Similarity=0.540  Sum_probs=36.0

Q ss_pred             CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019          389 DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (520)
Q Consensus       389 ~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa  429 (520)
                      ++++..+++.|+++.|+++|.  ++++.++++++++|+||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLK--SEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHc
Confidence            458889999999999999998  678999999999999997

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.63  E-value=0.012  Score=62.97  Aligned_cols=241  Identities=12%  Similarity=0.095  Sum_probs=153.8

Q ss_pred             CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcC-----ChHHHHHHHHHHHHhcCCCCcchhhhhhchH
Q 010019          230 NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-----RNDSIQSLYDAIRVLLTPDDDQVVASQVYGY  304 (520)
Q Consensus       230 ~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~  304 (520)
                      ..+.++...|+++|.|+...++..|+.+.+.|..+.+++.|+.+     +.+..--.++.|+-++.....         .
T Consensus        43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~---------~  113 (446)
T PF10165_consen   43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPD---------D  113 (446)
T ss_pred             CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChh---------H
Confidence            45678889999999999999999999999999999999999987     336656688888876654321         1


Q ss_pred             HHHHH-HcCCHHHHHHHHhcCC----------------ChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhcc-
Q 010019          305 ARRFA-KIGIARALVHSLHAGL----------------SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS-  366 (520)
Q Consensus       305 a~~i~-~~g~l~~Lv~lL~~~~----------------~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~-  366 (520)
                      .+.++ +.+++..|+..|..+-                +.....+++.+++|+.........-.+.+.++.|+.++... 
T Consensus       114 ~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l  193 (446)
T PF10165_consen  114 RKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLL  193 (446)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHh
Confidence            22455 5588888888776421                12446788899999985322211113455677777777654 


Q ss_pred             --C--CCCcHHHHHHHHHHHHHhhCCCchHHHH--------------HhcCCHHHHHHHHhcc----CCC--HHHHHHHH
Q 010019          367 --G--LQGNKTVARICCSLLSKLAGSDSNKSAI--------------IENGGMDKLIVVSARF----SDD--ASVLQEVM  422 (520)
Q Consensus       367 --~--~~~~~~v~~~al~aL~~La~~~~~k~~I--------------v~~g~l~~Lv~lL~~~----~~~--~~v~~~a~  422 (520)
                        .  +.+......++..+|.|+=.  +....+              .....+..|+.+|.+.    ...  ....--.+
T Consensus       194 ~~~~~~~~l~~~~~~~in~L~nlpl--~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL  271 (446)
T PF10165_consen  194 PPPPSSPPLDPPHSHAINALLNLPL--ECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLL  271 (446)
T ss_pred             ccCCCCCcchhhHHHHHHHHhCCCh--HHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHH
Confidence              1  11223667788888887721  111111              1122466777776542    211  24455667


Q ss_pred             HHHHHHhcCCHHHHHHHHh--------------cC--cHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhC
Q 010019          423 SIITVLSLRSPENAARAME--------------AG--SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSN  486 (520)
Q Consensus       423 ~aL~nLa~~~~~~~~~i~~--------------~G--~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~  486 (520)
                      .+|..++..+...++.+..              .|  .-..|+++|. ++. +.+...++-.+-.|+   .+....|++.
T Consensus       272 ~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt-~~~-~~~k~~vaellf~Lc---~~d~~~~v~~  346 (446)
T PF10165_consen  272 TLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT-SPD-PQLKDAVAELLFVLC---KEDASRFVKY  346 (446)
T ss_pred             HHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC-CCC-chHHHHHHHHHHHHH---hhhHHHHHHH
Confidence            7788888765555555543              12  3567788774 555 788888888888885   3444555554

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PTZ00429 beta-adaptin; Provisional

Probab=97.58  E-value=0.15  Score=57.82  Aligned_cols=295  Identities=12%  Similarity=0.024  Sum_probs=161.2

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Q 010019          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (520)
Q Consensus       124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l  203 (520)
                      +..|+..+.+       .+.....++++.+-.....  +...      +-..+-++.++.+.   +.++..-+.-.+...
T Consensus        34 ~~ELr~~L~s-------~~~~~kk~alKkvIa~mt~--G~Dv------S~LF~dVvk~~~S~---d~elKKLvYLYL~~y   95 (746)
T PTZ00429         34 GAELQNDLNG-------TDSYRKKAAVKRIIANMTM--GRDV------SYLFVDVVKLAPST---DLELKKLVYLYVLST   95 (746)
T ss_pred             HHHHHHHHHC-------CCHHHHHHHHHHHHHHHHC--CCCc------hHHHHHHHHHhCCC---CHHHHHHHHHHHHHH
Confidence            4566777766       5666677888776665543  3221      12566777777764   444433233333333


Q ss_pred             hcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHH
Q 010019          204 VHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYD  283 (520)
Q Consensus       204 ~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~  283 (520)
                      ...+   ++.. -=.+..+.+=+.  +.++-+...|+++++.+.  .+..-+     -.++.+.+.|...+.-+++.|+-
T Consensus        96 a~~~---pela-lLaINtl~KDl~--d~Np~IRaLALRtLs~Ir--~~~i~e-----~l~~~lkk~L~D~~pYVRKtAal  162 (746)
T PTZ00429         96 ARLQ---PEKA-LLAVNTFLQDTT--NSSPVVRALAVRTMMCIR--VSSVLE-----YTLEPLRRAVADPDPYVRKTAAM  162 (746)
T ss_pred             cccC---hHHH-HHHHHHHHHHcC--CCCHHHHHHHHHHHHcCC--cHHHHH-----HHHHHHHHHhcCCCHHHHHHHHH
Confidence            3322   2210 001222222222  457888899999887643  222212     23456677776656578888888


Q ss_pred             HHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC-hhhHHHHHhcCChHHHHHH
Q 010019          284 AIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRC  362 (520)
Q Consensus       284 aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~-~e~~~~i~~~Ggv~~Ll~l  362 (520)
                      ++..|-..+..            .+.+.|.++.|.++|.+ +|+.++.+|+.+|..+... ++...  ...+.+..|+..
T Consensus       163 ai~Kly~~~pe------------lv~~~~~~~~L~~LL~D-~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~  227 (746)
T PTZ00429        163 GLGKLFHDDMQ------------LFYQQDFKKDLVELLND-NNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYH  227 (746)
T ss_pred             HHHHHHhhCcc------------cccccchHHHHHHHhcC-CCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHH
Confidence            88887653321            22355788999998875 4688999999999998633 22111  112224445555


Q ss_pred             HhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHh
Q 010019          363 IDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR-SPENAARAME  441 (520)
Q Consensus       363 L~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~-~~~~~~~i~~  441 (520)
                      |.+..+    -.+...+.+|...  .+......  ...+..+...|+  +.++.|.-.|+.++.++... +++....+..
T Consensus       228 L~e~~E----W~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq--~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~  297 (746)
T PTZ00429        228 LPECNE----WGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMS--HQNPAVVMGAIKVVANLASRCSQELIERCTV  297 (746)
T ss_pred             hhcCCh----HHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence            554322    2344555555332  22222221  134556666665  56899999999999988753 2333333221


Q ss_pred             cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChh
Q 010019          442 AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE  478 (520)
Q Consensus       442 ~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e  478 (520)
                       ....+++.++.   +++++|--+...|.-++...|.
T Consensus       298 -rl~~pLv~L~s---s~~eiqyvaLr~I~~i~~~~P~  330 (746)
T PTZ00429        298 -RVNTALLTLSR---RDAETQYIVCKNIHALLVIFPN  330 (746)
T ss_pred             -HHHHHHHHhhC---CCccHHHHHHHHHHHHHHHCHH
Confidence             12244444431   3556666666666555554443

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.56  E-value=0.16  Score=58.47  Aligned_cols=155  Identities=13%  Similarity=0.114  Sum_probs=97.3

Q ss_pred             CHHHHHHHHhcC---CChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-
Q 010019          313 IARALVHSLHAG---LSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-  388 (520)
Q Consensus       313 ~l~~Lv~lL~~~---~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~-  388 (520)
                      .+|++++.+...   ++-.-...+..+|+.++.   -|...++ |-++.++.+.-.+..++++.|+.+||.+++.++.+ 
T Consensus       345 v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E---Gc~~~m~-~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl  420 (1075)
T KOG2171|consen  345 VLPPLFEALEAMLQSTEWKERHAALLALSVIAE---GCSDVMI-GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL  420 (1075)
T ss_pred             ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc---ccHHHHH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence            466666665532   333445677788888772   2223332 24555555544444445579999999999999954 


Q ss_pred             -CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHH
Q 010019          389 -DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCF  467 (520)
Q Consensus       389 -~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~  467 (520)
                       |+....- ..-.+|.|+..|.. ..++.|+.+|+.+|-|.+...+...-.=.--+..+..+..|. .++.+.+|.++..
T Consensus       421 ~p~iqk~~-~e~l~~aL~~~ld~-~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~-~~~~~~v~e~vvt  497 (1075)
T KOG2171|consen  421 QPEIQKKH-HERLPPALIALLDS-TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLL-QSSKPYVQEQAVT  497 (1075)
T ss_pred             cHHHHHHH-HHhccHHHHHHhcc-cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHh-cCCchhHHHHHHH
Confidence             4443333 33467788888874 468999999999999998754433221111233332333333 3467899999999


Q ss_pred             HHHHHhh
Q 010019          468 MIRNLVA  474 (520)
Q Consensus       468 aL~nL~~  474 (520)
                      +|...+.
T Consensus       498 aIasvA~  504 (1075)
T KOG2171|consen  498 AIASVAD  504 (1075)
T ss_pred             HHHHHHH
Confidence            9998863

>PTZ00429 beta-adaptin; Provisional

Probab=97.55  E-value=0.14  Score=58.07  Aligned_cols=287  Identities=14%  Similarity=0.105  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHHh-------cCcHHHHHHHHhhc-ccCcHHHHHHHHHHHHHhhcccccchhH-
Q 010019          143 LNEMMGLFDKLIELCGGNEGSVNAAVATK-------NGGVELVCSICYKM-RCGSKRVLDSCLKTMALLVHDVQSTETF-  213 (520)
Q Consensus       143 ~~~~~~al~~L~~l~~~~~~~~~r~~i~~-------~Gaip~Lv~lL~~~-~~~~~~~~~~al~~La~l~~~~~~~~~i-  213 (520)
                      ++...-+...|++=++. .++-.|..+.+       ...++.++..+++. ...++-+...|.-++..+-...   +++ 
T Consensus       100 pelalLaINtl~KDl~d-~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~---pelv  175 (746)
T PTZ00429        100 PEKALLAVNTFLQDTTN-SSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD---MQLF  175 (746)
T ss_pred             hHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---cccc
Confidence            44444455555554443 24444444433       12233333333221 1246777777777777765433   233 


Q ss_pred             HhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC
Q 010019          214 RTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD  293 (520)
Q Consensus       214 ~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd  293 (520)
                      ...+-++.|.++|.  ..++.++..|+.+|..++...+. + .-...+.+..|+..|...++=.+-....+|....-.++
T Consensus       176 ~~~~~~~~L~~LL~--D~dp~Vv~nAl~aL~eI~~~~~~-~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~  251 (746)
T PTZ00429        176 YQQDFKKDLVELLN--DNNPVVASNAAAIVCEVNDYGSE-K-IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDK  251 (746)
T ss_pred             cccchHHHHHHHhc--CCCccHHHHHHHHHHHHHHhCch-h-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCc
Confidence            34566788888886  46789999999999888754332 1 11223445566666655443222223333322111111


Q ss_pred             cchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC--hhhHHHHH-hcCChHHHHHHHhccCCCC
Q 010019          294 DQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVA-ENGGIDALLRCIDDSGLQG  370 (520)
Q Consensus       294 ~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~--~e~~~~i~-~~Ggv~~Ll~lL~~~~~~~  370 (520)
                               +.+.     ..+..+...|+. .++.++-.++.++.+++..  ++....+. +.+  .+++.+++.  +  
T Consensus       252 ---------~e~~-----~il~~l~~~Lq~-~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~--~pLv~L~ss--~--  310 (746)
T PTZ00429        252 ---------ESAE-----TLLTRVLPRMSH-QNPAVVMGAIKVVANLASRCSQELIERCTVRVN--TALLTLSRR--D--  310 (746)
T ss_pred             ---------HHHH-----HHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH--HHHHHhhCC--C--
Confidence                     0111     245666666765 4677888999999988743  33333322 222  466666543  2  


Q ss_pred             cHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHH
Q 010019          371 NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQ  450 (520)
Q Consensus       371 ~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~  450 (520)
                       ++++-.++..|..|....   ..++... +..   ..-++.+...|+...+.+|..|+  +++|...++     ..|.+
T Consensus       311 -~eiqyvaLr~I~~i~~~~---P~lf~~~-~~~---Ff~~~~Dp~yIK~~KLeIL~~La--ne~Nv~~IL-----~EL~e  375 (746)
T PTZ00429        311 -AETQYIVCKNIHALLVIF---PNLLRTN-LDS---FYVRYSDPPFVKLEKLRLLLKLV--TPSVAPEIL-----KELAE  375 (746)
T ss_pred             -ccHHHHHHHHHHHHHHHC---HHHHHHH-HHh---hhcccCCcHHHHHHHHHHHHHHc--CcccHHHHH-----HHHHH
Confidence             267777777776665322   1122110 111   11122344456666666666665  345554443     22222


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHhhh
Q 010019          451 AMLKFPNAQQLQRSSCFMIRNLVAR  475 (520)
Q Consensus       451 ~L~~~~~~~~vqk~A~~aL~nL~~~  475 (520)
                      -..  ..+.++.+++..+|..++.+
T Consensus       376 Ya~--d~D~ef~r~aIrAIg~lA~k  398 (746)
T PTZ00429        376 YAS--GVDMVFVVEVVRAIASLAIK  398 (746)
T ss_pred             Hhh--cCCHHHHHHHHHHHHHHHHh
Confidence            221  13445555566666555543

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.54  E-value=0.0061  Score=65.29  Aligned_cols=268  Identities=15%  Similarity=0.100  Sum_probs=169.0

Q ss_pred             HHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHH--h-----hcccCcHHHHHHHHHHHHHhhccc-ccchhHHhcCCcHH
Q 010019          150 FDKLIELCGGNEGSVNAAVATKNGGVELVCSIC--Y-----KMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPKL  221 (520)
Q Consensus       150 l~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL--~-----~~~~~~~~~~~~al~~La~l~~~~-~~~~~i~~~ggi~~  221 (520)
                      |..||-+..   ++....-+....++..|..+=  .     .....+..+...|++.|++++-.+ ..|+.+++.|+.+.
T Consensus         2 L~~LRiLsR---d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~   78 (446)
T PF10165_consen    2 LETLRILSR---DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEK   78 (446)
T ss_pred             HHHHHHHcc---CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHH
Confidence            344444443   454555555555566655543  0     112246678888999999987544 34777888999999


Q ss_pred             HHHHHhcCCC---ChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCHHHHHHHHhcCC----------------h-HHHHH
Q 010019          222 LVNILIDGNE---DPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEILSRQR----------------N-DSIQS  280 (520)
Q Consensus       222 Lv~lL~~~~~---~~~v~~~a~~~L~~~~~~~e~nr~~i~~~-g~i~~Lv~lL~~~~----------------~-~~~~~  280 (520)
                      +++.|+.+.+   +.++.....+.+.-++......+..+++. +++..|+..|..+-                + .....
T Consensus        79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E  158 (446)
T PF10165_consen   79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE  158 (446)
T ss_pred             HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence            9999988643   57777888888888777777777777755 78898888886430                1 34556


Q ss_pred             HHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcC---C--C---hhHHHHHHHHHHHhccChhhHHH---
Q 010019          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAG---L--S---SPSLISASIALKAVAVNDEICKS---  349 (520)
Q Consensus       281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~---~--~---~~~~~~a~~aL~~La~~~e~~~~---  349 (520)
                      +..+++|++..-....+        .  -....++.|+.++...   .  +   ......+..+|.++-..  ....   
T Consensus       159 iLKllFNit~~~~~~~~--------~--~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~--~~~~l~~  226 (446)
T PF10165_consen  159 ILKLLFNITLHYPKSVP--------E--EFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE--CLDSLLS  226 (446)
T ss_pred             HHHHHHHhhhccCcccc--------h--hhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH--HHhhhhc
Confidence            88899999875433321        0  1123466666666544   2  1   24556677777777321  1111   


Q ss_pred             -----------HHhcCChHHHHHHHhccCCC----CcHHHHHHHHHHHHHhhCC-CchHHHHHh---------------c
Q 010019          350 -----------VAENGGIDALLRCIDDSGLQ----GNKTVARICCSLLSKLAGS-DSNKSAIIE---------------N  398 (520)
Q Consensus       350 -----------i~~~Ggv~~Ll~lL~~~~~~----~~~~v~~~al~aL~~La~~-~~~k~~Iv~---------------~  398 (520)
                                 ......+..|+.+|......    .-.+.+.+.+.+|.+++.. ...|..+..               .
T Consensus       227 ~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~  306 (446)
T PF10165_consen  227 PKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKG  306 (446)
T ss_pred             ccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCC
Confidence                       11223356777777542211    1125788999999999855 455555543               1


Q ss_pred             CC-HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHH
Q 010019          399 GG-MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE  434 (520)
Q Consensus       399 g~-l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~  434 (520)
                      +. -..|+++|.  +..+.++..+...|..||.++++
T Consensus       307 ~tL~~rLlrLmt--~~~~~~k~~vaellf~Lc~~d~~  341 (446)
T PF10165_consen  307 DTLRSRLLRLMT--SPDPQLKDAVAELLFVLCKEDAS  341 (446)
T ss_pred             cchHHHHHHHhC--CCCchHHHHHHHHHHHHHhhhHH
Confidence            22 468999997  44489999999999999975543

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.50  E-value=0.00024  Score=48.92  Aligned_cols=39  Identities=13%  Similarity=0.297  Sum_probs=35.0

Q ss_pred             HHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019          433 PENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV  473 (520)
Q Consensus       433 ~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~  473 (520)
                      ++++..+++.|+++.++++|.  ++++.+++.|+|+|+||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLK--SEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHc
Confidence            458889999999999999996  468999999999999995

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.47  E-value=0.035  Score=61.08  Aligned_cols=300  Identities=10%  Similarity=0.028  Sum_probs=171.0

Q ss_pred             cCcHHHHHHHHhhccc-Cc------HHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCC--hHHHHHHHHH
Q 010019          172 NGGVELVCSICYKMRC-GS------KRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNED--PEILNSGFAV  242 (520)
Q Consensus       172 ~Gaip~Lv~lL~~~~~-~~------~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~--~~v~~~a~~~  242 (520)
                      .+.+|.|+++|.+.+. ++      ....-.||..++-.+.|.          .++.++.+++.+-.+  -+-...|..+
T Consensus       318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~----------Iv~~Vl~Fiee~i~~pdwr~reaavmA  387 (859)
T KOG1241|consen  318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD----------IVPHVLPFIEENIQNPDWRNREAAVMA  387 (859)
T ss_pred             hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc----------chhhhHHHHHHhcCCcchhhhhHHHHH
Confidence            4788999999976432 11      122445677677666432          456777777654333  3444566666


Q ss_pred             HHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHh
Q 010019          243 VAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH  322 (520)
Q Consensus       243 L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~  322 (520)
                      ++.+....+..+..-+..+++|.++.++....--+...+.|+|..++..-.    +...  |  .....+.++.|++-|.
T Consensus       388 FGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~----e~~~--n--~~~l~~~l~~l~~gL~  459 (859)
T KOG1241|consen  388 FGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP----EAII--N--QELLQSKLSALLEGLN  459 (859)
T ss_pred             HHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch----hhcc--c--HhhhhHHHHHHHHHhh
Confidence            666655556666666667899999999985444555779999998884321    1000  0  1112244666666665


Q ss_pred             cCCChhHHHHHHHHHHHhcc-ChhhHHHHHhc-------CChHHHHHHHhccCCC---CcHHHHHHHHHHHHHhhCC--C
Q 010019          323 AGLSSPSLISASIALKAVAV-NDEICKSVAEN-------GGIDALLRCIDDSGLQ---GNKTVARICCSLLSKLAGS--D  389 (520)
Q Consensus       323 ~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~-------Ggv~~Ll~lL~~~~~~---~~~~v~~~al~aL~~La~~--~  389 (520)
                      ..  +.+..++||++-+|+. -.+   ..+..       --.+.++.-|-...+.   .+..+...+..+|..|..+  +
T Consensus       460 De--Prva~N~CWAf~~Laea~~e---A~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~  534 (859)
T KOG1241|consen  460 DE--PRVASNVCWAFISLAEAAYE---AAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD  534 (859)
T ss_pred             hC--chHHHHHHHHHHHHHHHHHH---hccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence            54  5678899999999982 111   11111       1122333332111111   1247888999999999743  3


Q ss_pred             chHHHHHhcCCHHH----HHHHHhc----cCC---CHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCC
Q 010019          390 SNKSAIIENGGMDK----LIVVSAR----FSD---DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNA  458 (520)
Q Consensus       390 ~~k~~Iv~~g~l~~----Lv~lL~~----~~~---~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~  458 (520)
                      +.-..+.  +....    |-+.|+.    +.+   --.++..-|.+|..+-..-+.-+..+.+ .....+++.|.. ++.
T Consensus       535 ~vy~~v~--~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~lflri~~s-~~s  610 (859)
T KOG1241|consen  535 DVYPMVQ--KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMGLFLRIFES-KRS  610 (859)
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHHHHHHHHcC-Ccc
Confidence            3333332  22222    2223331    111   1256667788888776544443333332 356778888876 567


Q ss_pred             HHHHHHHHHHHHHHhhh-ChhhHHHHHhCCHHHHHHHHHHhCc
Q 010019          459 QQLQRSSCFMIRNLVAR-NPENRKLLLSNGVEKLIRQAKENHE  500 (520)
Q Consensus       459 ~~vqk~A~~aL~nL~~~-~~e~~~~l~~~G~~~lL~~~~~~h~  500 (520)
                      ..++..|-.++..++.. .+...+++-  -..|.|...++++.
T Consensus       611 ~~v~e~a~laV~tl~~~Lg~~F~kym~--~f~pyL~~gL~n~~  651 (859)
T KOG1241|consen  611 AVVHEEAFLAVSTLAESLGKGFAKYMP--AFKPYLLMGLSNFQ  651 (859)
T ss_pred             ccchHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHhhcch
Confidence            77899999999988743 333333322  34566666665553

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.0044  Score=66.90  Aligned_cols=303  Identities=13%  Similarity=0.157  Sum_probs=177.8

Q ss_pred             CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcC--------CcHHHHHHHhcCCCChHHHHHHHHHHH
Q 010019          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGG--------GPKLLVNILIDGNEDPEILNSGFAVVA  244 (520)
Q Consensus       173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~g--------gi~~Lv~lL~~~~~~~~v~~~a~~~L~  244 (520)
                      .+.|.|+.+|.+.   +.-...-|+.+|.-++.|.   ..+.+..        .+|.++++.+++  ++++...|+.++-
T Consensus       128 elLp~L~~~L~s~---d~n~~EgA~~AL~KIcEDs---a~~lds~~~~rpl~~mipkfl~f~~h~--spkiRs~A~~cvN  199 (885)
T KOG2023|consen  128 ELLPQLCELLDSP---DYNTCEGAFGALQKICEDS---AQFLDSDVLTRPLNIMIPKFLQFFKHP--SPKIRSHAVGCVN  199 (885)
T ss_pred             hHHHHHHHHhcCC---cccccchhHHHHHHHHhhh---HHHHhhhcccCchHHhHHHHHHHHhCC--ChhHHHHHHhhhh
Confidence            3578899999875   4344566788888888765   4555442        477888888754  6888888888774


Q ss_pred             HHhcCChhhHHHHH-hc-CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHH-H-cCCHHHHHHH
Q 010019          245 ASATGNEVVKESYM-EL-KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-K-IGIARALVHS  320 (520)
Q Consensus       245 ~~~~~~e~nr~~i~-~~-g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~-~-~g~l~~Lv~l  320 (520)
                      .....   +-+.++ .. .-++.|..+-+..+++++++.|.+|..|..   .|+.         .++ . .+.++-.+..
T Consensus       200 q~i~~---~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle---vr~d---------kl~phl~~IveyML~~  264 (885)
T KOG2023|consen  200 QFIII---QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE---VRPD---------KLVPHLDNIVEYMLQR  264 (885)
T ss_pred             heeec---CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH---hcHH---------hcccchHHHHHHHHHH
Confidence            43221   112222 21 233444444333345999999999998874   2221         233 1 2344555554


Q ss_pred             HhcCCChhHHHHHHHHHHHhccChhhHHHHHh---cCChHHHHHHHhccCCCC---------------------------
Q 010019          321 LHAGLSSPSLISASIALKAVAVNDEICKSVAE---NGGIDALLRCIDDSGLQG---------------------------  370 (520)
Q Consensus       321 L~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~---~Ggv~~Ll~lL~~~~~~~---------------------------  370 (520)
                      .+.+ |.++.-+||-....+|..+ .|..+..   ...||.|++=|..+ +..                           
T Consensus       265 tqd~-dE~VALEACEFwla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ys-d~D~~LL~~~eeD~~vpDreeDIkPRfhks  341 (885)
T KOG2023|consen  265 TQDV-DENVALEACEFWLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYS-DDDIILLKNNEEDESVPDREEDIKPRFHKS  341 (885)
T ss_pred             ccCc-chhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHccCccc-cccHHHhcCccccccCCchhhhccchhhhc
Confidence            4442 5678888998888888766 5555443   23355555443311 100                           


Q ss_pred             --------------------------cHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhcc--CCCHHHHHHHH
Q 010019          371 --------------------------NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF--SDDASVLQEVM  422 (520)
Q Consensus       371 --------------------------~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~--~~~~~v~~~a~  422 (520)
                                                +..+.+-...+|-.||.       +.....++.++-+|+.+  +++=.++|.++
T Consensus       342 k~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagv  414 (885)
T KOG2023|consen  342 KEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGV  414 (885)
T ss_pred             hhccCccccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhH
Confidence                                      02333334444444432       22223445555555443  34557899999


Q ss_pred             HHHHHHhcCCHHHHHHHHhc--CcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHhCCHHHHHHHHHHhC
Q 010019          423 SIITVLSLRSPENAARAMEA--GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENRKLLLSNGVEKLIRQAKENH  499 (520)
Q Consensus       423 ~aL~nLa~~~~~~~~~i~~~--G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-~~e~~~~l~~~G~~~lL~~~~~~h  499 (520)
                      -+|..++.+.-   +-++..  ..++.+++.|..  ..+-|.+-.||.|...+.. ..+.+..+..-=.+.+++.++...
T Consensus       415 LAlGAIAEGcM---~g~~p~LpeLip~l~~~L~D--KkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~N  489 (885)
T KOG2023|consen  415 LALGAIAEGCM---QGFVPHLPELIPFLLSLLDD--KKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSN  489 (885)
T ss_pred             HHHHHHHHHHh---hhcccchHHHHHHHHHHhcc--CccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhccc
Confidence            99999986421   111111  136777777744  4677888899999888532 222244444444567788888878


Q ss_pred             cchHHHHHHHHHHc
Q 010019          500 EICKDAATDALRDL  513 (520)
Q Consensus       500 ~~~~~~a~aALr~L  513 (520)
                      +..|..|..|+-.|
T Consensus       490 K~VQEAAcsAfAtl  503 (885)
T KOG2023|consen  490 KKVQEAACSAFATL  503 (885)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888877654

>PF05536 Neurochondrin: Neurochondrin

Probab=97.43  E-value=0.014  Score=64.08  Aligned_cols=194  Identities=14%  Similarity=0.104  Sum_probs=126.9

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh---HHHHHhcCCHHHHHHHHhcCC-------hHHHHHHHHHHHHhc
Q 010019          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVV---KESYMELKIDELILEILSRQR-------NDSIQSLYDAIRVLL  289 (520)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n---r~~i~~~g~i~~Lv~lL~~~~-------~~~~~~a~~aL~~Ls  289 (520)
                      +..+++|+...  -+-...|+-.+..++...+.+   +..+.++=+..-|-++|+++.       ...+.-|..+|..+|
T Consensus         8 ~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    8 EKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            44455565433  222335677777776654432   345667766789999999842       155556889999999


Q ss_pred             CCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCC
Q 010019          290 TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQ  369 (520)
Q Consensus       290 ~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~  369 (520)
                      .+++...       + ..++  +-||.|++++....+.++..+++.+|..++..++-.+.+++.|+++.|.+.+.+++  
T Consensus        86 ~~~~~a~-------~-~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~--  153 (543)
T PF05536_consen   86 RDPELAS-------S-PQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQS--  153 (543)
T ss_pred             CChhhhc-------C-HHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCc--
Confidence            9665322       1 1444  24999999999876657889999999999999999999999999999999998732  


Q ss_pred             CcHHHHHHHHHHHHHhhCCCchHHHHHhcC----CHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 010019          370 GNKTVARICCSLLSKLAGSDSNKSAIIENG----GMDKLIVVSARFSDDASVLQEVMSIITVLSLRS  432 (520)
Q Consensus       370 ~~~~v~~~al~aL~~La~~~~~k~~Iv~~g----~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~  432 (520)
                         ...+.++.+|.++.........--...    .++.+-.....  .....+-..|..|..+-.+.
T Consensus       154 ---~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~--~~~~~kfell~~L~~~L~~~  215 (543)
T PF05536_consen  154 ---FQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSS--FHGEDKFELLEFLSAFLPRS  215 (543)
T ss_pred             ---chHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHhcCcC
Confidence               467888888888864432111101111    22333333331  12334556677777776544

>PRK14707 hypothetical protein; Provisional

Probab=97.41  E-value=0.084  Score=63.87  Aligned_cols=296  Identities=13%  Similarity=0.111  Sum_probs=178.1

Q ss_pred             cHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHH
Q 010019          189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE  268 (520)
Q Consensus       189 ~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~  268 (520)
                      ++.....+...|+..+.+......-....++..++..|+...+...-... +.+|.......+.-+..+- .-.+..++.
T Consensus       555 ~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~aC~~A-a~~LA~~l~~~~~lr~~l~-~q~lan~lN  632 (2710)
T PRK14707        555 DKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAVCAEA-VNALAERLVDEPDLRKELD-PVDVTNVLN  632 (2710)
T ss_pred             chhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHHHHHH-HHHHHHHhccChhhhhhcc-HHHHHHHHh
Confidence            44555556667777665543334445567888999999888776555444 4444443344444444432 234566777


Q ss_pred             HHhcCCh-HHHHHHHHHH-HHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHH-HhccChh
Q 010019          269 ILSRQRN-DSIQSLYDAI-RVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK-AVAVNDE  345 (520)
Q Consensus       269 lL~~~~~-~~~~~a~~aL-~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~-~La~~~e  345 (520)
                      .|..... +.-+.+...| ..|..+...+.          .| ..-.+.-+++.|.+.++.+....++..|. .|+....
T Consensus       633 ALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~----------~f-naQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~rLa~~~~  701 (2710)
T PRK14707        633 ALSKWPGTEVCAEVARLLAGRLVGDRLLRK----------TF-NSLDVANALNALSKWPDTPVCAAAAGGMAERLAADPG  701 (2710)
T ss_pred             hhhcCCCchHHHHHHHHHHHHhhhchhhHh----------hc-chHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcChh
Confidence            7755433 3333333333 23333322111          11 23357788888888887667777777775 4555555


Q ss_pred             hHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHH
Q 010019          346 ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSI  424 (520)
Q Consensus       346 ~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~a  424 (520)
                      -++. ...-+|.-+++.|++.++.   .....+...|..-. ..+.-+. -.+..++.-.+..|.++.+++. ++.|..+
T Consensus       702 Lr~a-l~pQ~vAN~LNALSKWP~~---~~Cr~AA~~LA~rL~~~p~l~~-a~~aQevANaLNALSKWPd~~~-C~~AA~a  775 (2710)
T PRK14707        702 LRKE-LNPVDVANALNALSKWPRT---PVCAAVASALAARVVAEPRLRK-AFDAQQVATALNALSKWPDNQA-CAAAANT  775 (2710)
T ss_pred             hHhh-cCHHHHHHHHhhhhcCCCc---HHHHHHHHHHHHHHhcChhhhh-hcCHHHHHHHHHHhhcCCCchH-HHHHHHH
Confidence            5544 4445678889999998775   45555555554433 3344333 3455678888888988876555 4555555


Q ss_pred             HHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcc---
Q 010019          425 ITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEI---  501 (520)
Q Consensus       425 L~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~---  501 (520)
                      |+.=-.+++..+..+- .-.+...++.|++.|..... +.|+.+|..-..+.+..+..|-..++...| .++.+-|+   
T Consensus       776 LA~rLa~~~~Lr~aL~-pQ~vAn~LNALSKWPe~~~C-r~AA~~LA~rLa~dp~Lr~af~AQ~VANaL-NALSKWPd~~~  852 (2710)
T PRK14707        776 LAERQLREPDVRDVLK-PREMTNALNALSKWPDTPAC-AAAASALAARVADDPRLREAFDVQHVATVL-NAMSKWPDNAV  852 (2710)
T ss_pred             HHHHHhhCcchhhhcC-HHHHHHHHHHhhcCCCchHH-HHHHHHHHHHHhcChhHHHhcCHHHHHHHH-HHhccCCCchH
Confidence            5532235666655442 33466778889999876654 566666665557789999998888998888 45566664   


Q ss_pred             hHHHH
Q 010019          502 CKDAA  506 (520)
Q Consensus       502 ~~~~a  506 (520)
                      |...+
T Consensus       853 Cr~AA  857 (2710)
T PRK14707        853 CAAAA  857 (2710)
T ss_pred             HHHHH
Confidence            55443

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.36  E-value=0.0094  Score=54.12  Aligned_cols=138  Identities=15%  Similarity=0.204  Sum_probs=108.1

Q ss_pred             hHHHHHhcCChHHHHHHHhccCCC--CcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHH
Q 010019          346 ICKSVAENGGIDALLRCIDDSGLQ--GNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMS  423 (520)
Q Consensus       346 ~~~~i~~~Ggv~~Ll~lL~~~~~~--~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~  423 (520)
                      +...+...||+..|++++.++.+.  ...++...++.++..|..++-..-..++...+..++...+....++.+++.+++
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            345788999999999999886531  113788899999999987665444566667788999999865558999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHh
Q 010019          424 IITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENRKLLLS  485 (520)
Q Consensus       424 aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-~~e~~~~l~~  485 (520)
                      .|-+++..++.....+.++=-++.++..|+.  .++.+|.+|..+|..|-.+ +++.++.+.+
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~--~~~~iq~naiaLinAL~~kA~~~~r~~i~~  143 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQV--SNQEIQTNAIALINALFLKADDSKRKEIAE  143 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHc--CCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            9999999888878877776678999999987  6899999999888887655 3444444444

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.087  Score=59.86  Aligned_cols=300  Identities=14%  Similarity=0.119  Sum_probs=181.9

Q ss_pred             HHHHHHHHHHhhcccccchhHHh-----cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHH
Q 010019          193 LDSCLKTMALLVHDVQSTETFRT-----GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELIL  267 (520)
Q Consensus       193 ~~~al~~La~l~~~~~~~~~i~~-----~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv  267 (520)
                      ..-+|++|.++...++.-..+..     -|-.+.+...|+.+ .+++++..++.++..+. .+.++-..+...|.+..|+
T Consensus      1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~-~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCR-KHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred             HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHc-CCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHH
Confidence            45688888888877653333332     25567777788764 46889999999887664 4667888899999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhh-
Q 010019          268 EILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI-  346 (520)
Q Consensus       268 ~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~-  346 (520)
                      .+|.+. .+..+-+..+|..|+...+.          ++.-++.|++.-+.+.+-..+.......++..|..|..+.-. 
T Consensus      1820 ~lLHS~-PS~R~~vL~vLYAL~S~~~i----------~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~G 1888 (2235)
T KOG1789|consen 1820 TLLHSQ-PSMRARVLDVLYALSSNGQI----------GKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTG 1888 (2235)
T ss_pred             HHHhcC-hHHHHHHHHHHHHHhcCcHH----------HHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccC
Confidence            999774 36677788999999976532          345567799999988887655455556677777777643211 


Q ss_pred             -H-------------HHHHhcCChHHHHHHHhccCCCCcHHHH------HHHHHHHHHhhC--------CCc--------
Q 010019          347 -C-------------KSVAENGGIDALLRCIDDSGLQGNKTVA------RICCSLLSKLAG--------SDS--------  390 (520)
Q Consensus       347 -~-------------~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~------~~al~aL~~La~--------~~~--------  390 (520)
                       +             ..+.+.| -+..+.++....+.  ++++      ...-+.+..+++        ++.        
T Consensus      1889 PrV~ITL~kFLP~~f~d~~RD~-PEAaVH~fE~T~En--PELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEq 1965 (2235)
T KOG1789|consen 1889 PRVTITLIKFLPEIFADSLRDS-PEAAVHMFESTSEN--PELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQ 1965 (2235)
T ss_pred             CceeeehHHhchHHHHHHHhcC-HHHHHHHHhccCCC--cccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchh
Confidence             1             1112222 24444444432222  2222      112222333321        000        


Q ss_pred             -----------------hHHHHHh------------cCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 010019          391 -----------------NKSAIIE------------NGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME  441 (520)
Q Consensus       391 -----------------~k~~Iv~------------~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~  441 (520)
                                       +|.-+.+            .|-++.+.++|.+........+--..++-.|...+|..+..+..
T Consensus      1966 sAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~ 2045 (2235)
T KOG1789|consen 1966 SAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPS 2045 (2235)
T ss_pred             hcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCC
Confidence                             0111111            12355666677643222222233333444455568888999999


Q ss_pred             cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcchHHHHHHHHH
Q 010019          442 AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALR  511 (520)
Q Consensus       442 ~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~~~~a~aALr  511 (520)
                      .|.+|.++.+|.-. + ..+-+.|...|..| +.|.-.+..|........+...|..-++--.-|..||.
T Consensus      2046 LGylPK~~~Am~~~-n-~s~P~SaiRVlH~L-sen~~C~~AMA~l~~i~~~m~~mkK~~~~~GLA~Ealk 2112 (2235)
T KOG1789|consen 2046 LGYLPKFCTAMCLQ-N-TSAPRSAIRVLHEL-SENQFCCDAMAQLPCIDGIMKSMKKQPSLMGLAAEALK 2112 (2235)
T ss_pred             ccchHHHHHHHHhc-C-CcCcHHHHHHHHHH-hhccHHHHHHhccccchhhHHHHHhcchHHHHHHHHHH
Confidence            99999999999542 2 22336777778777 45677778888765555566666666655445555554

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=0.12  Score=51.60  Aligned_cols=277  Identities=9%  Similarity=0.088  Sum_probs=151.9

Q ss_pred             HHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHH--hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 010019          177 LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR--TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK  254 (520)
Q Consensus       177 ~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~--~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr  254 (520)
                      -|+.+|.+.   ++.++..|...+.+++.. .. ..+.  +...++.+.+++.....    ...|+.++.|++.+ +..|
T Consensus         7 elv~ll~~~---sP~v~~~AV~~l~~lt~~-~~-~~~~~~~~~~lk~l~qL~~~~~~----~~~a~~alVnlsq~-~~l~   76 (353)
T KOG2973|consen    7 ELVELLHSL---SPPVRKAAVEHLLGLTGR-GL-QSLSKYSEALLKDLTQLLKDLDP----AEPAATALVNLSQK-EELR   76 (353)
T ss_pred             HHHHHhccC---ChHHHHHHHHHHhhcccc-ch-hhhccchhhhHHHHHHHccCccc----ccHHHHHHHHHHhh-HHHH
Confidence            356677663   667777777777666543 11 1121  12345666666653211    45677888888654 5567


Q ss_pred             HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhc-CCCh-hHHHH
Q 010019          255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHA-GLSS-PSLIS  332 (520)
Q Consensus       255 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~-~~~~-~~~~~  332 (520)
                      +.++.. .+..++..+-......-...|.+|.||+.+++.-...-...+    .-+..++..++...-. +.+. .-...
T Consensus        77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~----~~~~~~lm~l~~~~~d~~~n~~a~f~y  151 (353)
T KOG2973|consen   77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLT----EKKDSGLMRLARAFCDKSYNAYAEFHY  151 (353)
T ss_pred             HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcc----cccccchHHHHHHHhCcccccccchhH
Confidence            777766 666666666554446777799999999998875331100000    0011334444333322 2221 12344


Q ss_pred             HHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHH-HHHHHHHHHhhCCCchHHHHHhcCCHHHHHH-----
Q 010019          333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA-RICCSLLSKLAGSDSNKSAIIENGGMDKLIV-----  406 (520)
Q Consensus       333 a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~-~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~-----  406 (520)
                      .+..+.||+....-+..+.+...+  ..+.+-.+... +..|. ....+.|+|.+........+.. -.+..+..     
T Consensus       152 lA~vf~nls~~~~gR~l~~~~k~~--p~~kll~ft~~-~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPl  227 (353)
T KOG2973|consen  152 LAPVFANLSQFEAGRKLLLEPKRF--PDQKLLPFTSE-DSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPL  227 (353)
T ss_pred             HHHHHHHHhhhhhhhhHhcchhhh--hHhhhhccccc-chhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhc
Confidence            566677887666666655554422  22222222111 11333 2346777776655555555544 23333333     


Q ss_pred             -------------------HHh---ccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHH
Q 010019          407 -------------------VSA---RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRS  464 (520)
Q Consensus       407 -------------------lL~---~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~  464 (520)
                                         +|-   .-..++.|++.-+-+|.-||. ...-++.+.+.|+.+.+ +-+-++..++.+ +.
T Consensus       228 agpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpil-RElhk~e~ded~-~~  304 (353)
T KOG2973|consen  228 AGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPIL-RELHKWEEDEDI-RE  304 (353)
T ss_pred             CCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHH-HHHhcCCCcHHH-HH
Confidence                               331   112468999999999999997 44556666666665554 445445566665 56


Q ss_pred             HHHHHHHHhhh
Q 010019          465 SCFMIRNLVAR  475 (520)
Q Consensus       465 A~~aL~nL~~~  475 (520)
                      ||.-+.++--+
T Consensus       305 ace~vvq~Lv~  315 (353)
T KOG2973|consen  305 ACEQVVQMLVR  315 (353)
T ss_pred             HHHHHHHHHHh
Confidence            77766666433

>TIGR02270 conserved hypothetical protein

Probab=97.21  E-value=0.049  Score=57.61  Aligned_cols=209  Identities=12%  Similarity=0.007  Sum_probs=119.5

Q ss_pred             HHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 010019          175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK  254 (520)
Q Consensus       175 ip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr  254 (520)
                      +..|+..|...   +..+...+..+|+.+-.          .+..+.|+.+|+  +.++.+...++.++..         
T Consensus        88 ~~~L~~~L~d~---~~~vr~aaa~ALg~i~~----------~~a~~~L~~~L~--~~~p~vR~aal~al~~---------  143 (410)
T TIGR02270        88 LRSVLAVLQAG---PEGLCAGIQAALGWLGG----------RQAEPWLEPLLA--ASEPPGRAIGLAALGA---------  143 (410)
T ss_pred             HHHHHHHhcCC---CHHHHHHHHHHHhcCCc----------hHHHHHHHHHhc--CCChHHHHHHHHHHHh---------
Confidence            66677766552   45566666666654321          123456667774  3456666555544432         


Q ss_pred             HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHH
Q 010019          255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISAS  334 (520)
Q Consensus       255 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~  334 (520)
                         ......+.|+.+|+..+..+...|+++|..|-.                    ...++.|...+.+ .++.+...+.
T Consensus       144 ---r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------------------~~a~~~L~~al~d-~~~~VR~aA~  199 (410)
T TIGR02270       144 ---HRHDPGPALEAALTHEDALVRAAALRALGELPR--------------------RLSESTLRLYLRD-SDPEVRFAAL  199 (410)
T ss_pred             ---hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------------------ccchHHHHHHHcC-CCHHHHHHHH
Confidence               111234567777775555666677777775543                    2345666666554 4566777777


Q ss_pred             HHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCC
Q 010019          335 IALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD  414 (520)
Q Consensus       335 ~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~  414 (520)
                      ++|..+-. +         .++.+++.+.... ..   ........+++ +.+.+         ..++.|..+++    +
T Consensus       200 ~al~~lG~-~---------~A~~~l~~~~~~~-g~---~~~~~l~~~la-l~~~~---------~a~~~L~~ll~----d  251 (410)
T TIGR02270       200 EAGLLAGS-R---------LAWGVCRRFQVLE-GG---PHRQRLLVLLA-VAGGP---------DAQAWLRELLQ----A  251 (410)
T ss_pred             HHHHHcCC-H---------hHHHHHHHHHhcc-Cc---cHHHHHHHHHH-hCCch---------hHHHHHHHHhc----C
Confidence            77755532 1         1233444433321 11   22222222222 22222         45677777776    3


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019          415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (520)
Q Consensus       415 ~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~  474 (520)
                      +.+++.++++|..+-.           -..++.+++.|.    +..+.+.|..+++.++.
T Consensus       252 ~~vr~~a~~AlG~lg~-----------p~av~~L~~~l~----d~~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       252 AATRREALRAVGLVGD-----------VEAAPWCLEAMR----EPPWARLAGEAFSLITG  296 (410)
T ss_pred             hhhHHHHHHHHHHcCC-----------cchHHHHHHHhc----CcHHHHHHHHHHHHhhC
Confidence            5588999999886553           347788888884    34588999999999964

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PRK14707 hypothetical protein; Provisional

Probab=97.20  E-value=0.16  Score=61.72  Aligned_cols=277  Identities=13%  Similarity=0.115  Sum_probs=173.5

Q ss_pred             hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHH-HHHHHHHhcCCC
Q 010019          215 TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQS-LYDAIRVLLTPD  292 (520)
Q Consensus       215 ~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~-a~~aL~~Ls~~d  292 (520)
                      +..++...+..|+...+.+.....+...-..+ .++...++.+-.. .+...+..|..-.+ .+-+. |..+-..|..+.
T Consensus       245 ~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl-~~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~  322 (2710)
T PRK14707        245 KPQELGNALNALSKWADTPVCAAAASALAERL-VDDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERLADDP  322 (2710)
T ss_pred             ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHH-hhhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHHhccH
Confidence            44577778888877766554443333333333 3444444444322 33445555555433 33333 333334454322


Q ss_pred             CcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHH-HhccChhhHHHHHhcCChHHHHHHHhccCCCCc
Q 010019          293 DDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK-AVAVNDEICKSVAENGGIDALLRCIDDSGLQGN  371 (520)
Q Consensus       293 d~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~-~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~  371 (520)
                      +-+           .-...-++.-.++.|..-+|..+...++.+|. .|+.+++.++.+- .-|+..+++.|++.++.  
T Consensus       323 ~l~-----------~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~--  388 (2710)
T PRK14707        323 ELC-----------KALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDT--  388 (2710)
T ss_pred             hhh-----------hccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCc--
Confidence            111           11122356667777887787667777777775 6777888887765 55678889999998876  


Q ss_pred             HHHHHHHHHHHHHh-hCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHH
Q 010019          372 KTVARICCSLLSKL-AGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQ  450 (520)
Q Consensus       372 ~~v~~~al~aL~~L-a~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~  450 (520)
                       .+...+...|..= ...++.+..+ +..++.-++..|.++. +..++..+..+|+.-..++++.++.+--. .+..++.
T Consensus       389 -~~c~~aa~~LA~~l~~d~~l~~~~-~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~-~va~~Ln  464 (2710)
T PRK14707        389 -PVCAAAASALAEHVVDDLELRKGL-DPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPI-NVTQALD  464 (2710)
T ss_pred             -hHHHHHHHHHHHHhccChhhhhhc-chhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChH-HHHHHHH
Confidence             5677666666543 4555655555 5578888999998886 55678888888887777788887766433 3566677


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcc---hHHHHHHHHHHc
Q 010019          451 AMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEI---CKDAATDALRDL  513 (520)
Q Consensus       451 ~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~---~~~~a~aALr~L  513 (520)
                      ++++.|+++.- ++|+..|..=.++.+++++.|--.++...| .++++||+   |...+...-..|
T Consensus       465 alSKWPd~p~c-~~aa~~La~~l~~~~~l~~a~~~q~~~~~L-~aLSK~Pd~~~c~~A~~~lA~rl  528 (2710)
T PRK14707        465 ALSKWPDTPIC-GQTASALAARLAHERRLRKALKPQEVVIAL-HSLSKWPDTPICAEAASALAERV  528 (2710)
T ss_pred             HhhcCCCChhH-HHHHHHHHHHhcccHHHHhhcCHHHHHHHH-HHhhcCCCcHHHHHHHHHHHHHh
Confidence            88999988654 455554444446788899888888888777 56778975   555444333333

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.05  E-value=0.017  Score=52.46  Aligned_cols=129  Identities=12%  Similarity=0.199  Sum_probs=96.9

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCC-----hhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHH
Q 010019          305 ARRFAKIGIARALVHSLHAGLS-----SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICC  379 (520)
Q Consensus       305 a~~i~~~g~l~~Lv~lL~~~~~-----~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al  379 (520)
                      |.++...||+..|++.+.+++.     .+.+..++.++..|....-......+.--|..++..+.....  ++.++..|+
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~--d~~i~q~sL   81 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAM--DASILQRSL   81 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccc--cchHHHHHH
Confidence            5688889999999999999874     356667777777776544434455555556677777775332  458999999


Q ss_pred             HHHHHhhCCCchHHHHHhcCC-HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHH
Q 010019          380 SLLSKLAGSDSNKSAIIENGG-MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAA  437 (520)
Q Consensus       380 ~aL~~La~~~~~k~~Iv~~g~-l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~  437 (520)
                      +.|-++..+....-..++... ++.|+..|+  ..++.++.++.+.+-.|-.+.++..+
T Consensus        82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq--~~~~~iq~naiaLinAL~~kA~~~~r  138 (160)
T PF11841_consen   82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQ--VSNQEIQTNAIALINALFLKADDSKR  138 (160)
T ss_pred             HHHHHHHhCCHHHHHHHhccCCHHHHHHHHH--cCCHHHHHHHHHHHHHHHhcCChHHH
Confidence            999999977766555555444 799999999  57899999999999999876655443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.99  E-value=0.092  Score=59.29  Aligned_cols=167  Identities=22%  Similarity=0.256  Sum_probs=114.1

Q ss_pred             HHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHH--HHHHHHhccC
Q 010019          336 ALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMD--KLIVVSARFS  412 (520)
Q Consensus       336 aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~--~Lv~lL~~~~  412 (520)
                      +||++. .++++|+.+.+.||...+.+++... +.  .+++..+++.|.+++...+.+.......-+.  .+-.++.++ 
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~--~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w-  569 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DN--EELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKW-  569 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cc--hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-
Confidence            899999 6889999999999999999999987 43  3899999999999996554443322111222  333345433 


Q ss_pred             CCHHHHHHHHHHHHHHhcCCHH---------HHHHHHh--------------cCcHHH-HHHHHHhCCCCHHHHHHHHHH
Q 010019          413 DDASVLQEVMSIITVLSLRSPE---------NAARAME--------------AGSGDL-AIQAMLKFPNAQQLQRSSCFM  468 (520)
Q Consensus       413 ~~~~v~~~a~~aL~nLa~~~~~---------~~~~i~~--------------~G~i~~-lv~~L~~~~~~~~vqk~A~~a  468 (520)
                      +..+.-..+++.|+.+..+.++         ....+.+              .....+ +..++. .+..++.+-+|.|+
T Consensus       570 ~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~-~s~~~g~~lWal~t  648 (699)
T KOG3665|consen  570 DSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR-LSKSDGSQLWALWT  648 (699)
T ss_pred             chhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc-ccCCCchHHHHHHH
Confidence            3457788999999999875332         1111111              111233 444454 34567889999999


Q ss_pred             HHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcchHHHHHH
Q 010019          469 IRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATD  508 (520)
Q Consensus       469 L~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~~~~a~a  508 (520)
                      +.|++..+++++..+.+.|....+........ -.++...
T Consensus       649 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  687 (699)
T KOG3665|consen  649 IKNVLEQNKEYCKLVRESNGFELIENIRVLSE-VVDVKEE  687 (699)
T ss_pred             HHHHHHcChhhhhhhHhccchhhhhhcchhHH-HHHHHHH
Confidence            99999889999998999888888877654333 3343333

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.93  E-value=0.31  Score=48.73  Aligned_cols=254  Identities=13%  Similarity=0.143  Sum_probs=150.6

Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH-hcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhh
Q 010019          221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVAS  299 (520)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~  299 (520)
                      -++++|.  +.++.++..|..-+..+...  ..+...- ..-.++.|.+++.....  .+.|+.+|.|++.+..-+    
T Consensus         7 elv~ll~--~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~----   76 (353)
T KOG2973|consen    7 ELVELLH--SLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELR----   76 (353)
T ss_pred             HHHHHhc--cCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHH----
Confidence            4566775  44677777777666665433  2222211 12345667777765432  566888999999765332    


Q ss_pred             hhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhc------CChHHHHHHHhccCCCCcHH
Q 010019          300 QVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAEN------GGIDALLRCIDDSGLQGNKT  373 (520)
Q Consensus       300 ~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~------Ggv~~Ll~lL~~~~~~~~~~  373 (520)
                            +.+... .+..++..+-.-. ...-.-+|.+|.||+..++.+..+...      .|+..+.....+......+ 
T Consensus        77 ------~~ll~~-~~k~l~~~~~~p~-~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a-  147 (353)
T KOG2973|consen   77 ------KKLLQD-LLKVLMDMLTDPQ-SPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYA-  147 (353)
T ss_pred             ------HHHHHH-HHHHHHHHhcCcc-cchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCccccccc-
Confidence                  345443 5566666554322 345567899999999887776654421      3344444433332221111 


Q ss_pred             HHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCC-CHHHH-HHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHH
Q 010019          374 VARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSD-DASVL-QEVMSIITVLSLRSPENAARAMEAGSGDLAIQA  451 (520)
Q Consensus       374 v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~-~~~v~-~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~  451 (520)
                      =...-..++.||+.....|..+.+...+  ..+-+..+.. +..|+ ...+++|.|.|+.. .+...++.. .+..+..+
T Consensus       148 ~f~ylA~vf~nls~~~~gR~l~~~~k~~--p~~kll~ft~~~s~vRr~GvagtlkN~cFd~-~~h~~lL~e-~~~lLp~i  223 (353)
T KOG2973|consen  148 EFHYLAPVFANLSQFEAGRKLLLEPKRF--PDQKLLPFTSEDSQVRRGGVAGTLKNCCFDA-KLHEVLLDE-SINLLPAI  223 (353)
T ss_pred             chhHHHHHHHHHhhhhhhhhHhcchhhh--hHhhhhcccccchhhhccchHHHHHhhhccc-hhHHHHhcc-hHHHHHHH
Confidence            2356677889999988888887766532  2233322322 44444 45688999999854 444445442 22222222


Q ss_pred             ------------------------HH---hCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHh
Q 010019          452 ------------------------ML---KFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKEN  498 (520)
Q Consensus       452 ------------------------L~---~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~  498 (520)
                                              |.   ..-.++.+.+.-.-+|--|++ ...-|..+.+.|+.+++|+.-+.
T Consensus       224 LlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~  296 (353)
T KOG2973|consen  224 LLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKW  296 (353)
T ss_pred             HhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcC
Confidence                                    21   112467888888888888865 46778999999999999987543

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.82  E-value=0.2  Score=56.99  Aligned_cols=248  Identities=14%  Similarity=0.184  Sum_probs=139.1

Q ss_pred             hcCCcHHHHHHHhcC---CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcC----C----hHHHHHHHH
Q 010019          215 TGGGPKLLVNILIDG---NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ----R----NDSIQSLYD  283 (520)
Q Consensus       215 ~~ggi~~Lv~lL~~~---~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~----~----~~~~~~a~~  283 (520)
                      ++||+..+++.|.+-   +...++....++.+..+|. -..||+.+.+.|+++.|++.|+..    .    .++.+....
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            468888888887652   2345677777888888774 588999999999999999999631    2    234444444


Q ss_pred             HHHHhcCCCC---cchhhhhhchHHHHHH----HcCCHHHHHHHHhcCC---ChhHHHHHHHHHHHhc-cChhhHHHHHh
Q 010019          284 AIRVLLTPDD---DQVVASQVYGYARRFA----KIGIARALVHSLHAGL---SSPSLISASIALKAVA-VNDEICKSVAE  352 (520)
Q Consensus       284 aL~~Ls~~dd---~~v~~~~a~~~a~~i~----~~g~l~~Lv~lL~~~~---~~~~~~~a~~aL~~La-~~~e~~~~i~~  352 (520)
                      .+-.|.....   .....+.    .....    ...-+..|++.+.+..   ++.+....+..|-+|+ .+++..+.+++
T Consensus       194 IiE~ll~ea~~~~~~~~~~~----~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~  269 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSS----SSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE  269 (802)
T ss_pred             HHHHHHHHHhhhhhhhcccc----ccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence            4444433211   1110000    00000    0012566666666432   3567788899999999 55565555554


Q ss_pred             cCChHHHHHHHhccCC--CC-cHHHHHHHHHHHHHhhCC---CchHHHHHhcCCHHHHHHHHhccCC------CHH----
Q 010019          353 NGGIDALLRCIDDSGL--QG-NKTVARICCSLLSKLAGS---DSNKSAIIENGGMDKLIVVSARFSD------DAS----  416 (520)
Q Consensus       353 ~Ggv~~Ll~lL~~~~~--~~-~~~v~~~al~aL~~La~~---~~~k~~Iv~~g~l~~Lv~lL~~~~~------~~~----  416 (520)
                      .  .++.++ +....+  .. +.-.+...|.+..++-.+   ...|+.|++.|.+...++.|..|..      +++    
T Consensus       270 ~--F~p~l~-f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~  346 (802)
T PF13764_consen  270 H--FKPYLD-FDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEF  346 (802)
T ss_pred             H--HHHhcC-hhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHH
Confidence            2  233332 121110  01 112223333333333222   2567889999999988888766532      222    


Q ss_pred             ----HHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010019          417 ----VLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL  472 (520)
Q Consensus       417 ----v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL  472 (520)
                          -...++..|.-||.+++... .+++.+++ .++..|..-+++..+=.-|=-+|-.|
T Consensus       347 l~~psLp~iL~lL~GLa~gh~~tQ-~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal  404 (802)
T PF13764_consen  347 LSRPSLPYILRLLRGLARGHEPTQ-LLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEAL  404 (802)
T ss_pred             hcCCcHHHHHHHHHHHHhcCHHHH-HHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHH
Confidence                23557888888998665444 44556666 55556655554444433444444444

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=96.82  E-value=0.0058  Score=49.46  Aligned_cols=88  Identities=20%  Similarity=0.275  Sum_probs=67.1

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHH
Q 010019          314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKS  393 (520)
Q Consensus       314 l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~  393 (520)
                      ||.|++.|.+.+++.+...++.+|+.+- ++         ..++.|+.++.+    +++.|+..++.+|+.+.       
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~---------~~~~~L~~~l~d----~~~~vr~~a~~aL~~i~-------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG-DP---------EAIPALIELLKD----EDPMVRRAAARALGRIG-------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT-HH---------HHHHHHHHHHTS----SSHHHHHHHHHHHHCCH-------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC-CH---------hHHHHHHHHHcC----CCHHHHHHHHHHHHHhC-------
Confidence            6889999976678889999999888652 11         237889998854    34689999999999873       


Q ss_pred             HHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHH
Q 010019          394 AIIENGGMDKLIVVSARFSDDASVLQEVMSIIT  426 (520)
Q Consensus       394 ~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~  426 (520)
                         ...+++.|.+++.. .++..++..|+.+|+
T Consensus        60 ---~~~~~~~L~~~l~~-~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 ---DPEAIPALIKLLQD-DDDEVVREAAAEALG   88 (88)
T ss_dssp             ---HHHTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHcC-CCcHHHHHHHHhhcC
Confidence               33488999999973 346778898988874

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.72  Score=46.50  Aligned_cols=246  Identities=11%  Similarity=0.072  Sum_probs=137.9

Q ss_pred             hhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHH-HHHHhcCCCChHHHHHHHHH
Q 010019          164 VNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLL-VNILIDGNEDPEILNSGFAV  242 (520)
Q Consensus       164 ~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~L-v~lL~~~~~~~~v~~~a~~~  242 (520)
                      .....++.+|.+|.++...-..   |-++...|.+.|..+..-+.....+..+.-...+ +.-|.... +.-.....+..
T Consensus       119 seillvvNaeilklildcIgge---ddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakc-ndiaRvRVleL  194 (524)
T KOG4413|consen  119 SEILLVVNAEILKLILDCIGGE---DDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKC-NDIARVRVLEL  194 (524)
T ss_pred             HHHHHHhhhhHHHHHHHHHcCC---cHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhh-hhHHHHHHHHH
Confidence            3455577899999999988654   6678888888887765433223444444332221 11111111 11112233444


Q ss_pred             HHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHH-HcCCHHHHHHH
Q 010019          243 VAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHS  320 (520)
Q Consensus       243 L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~-~~g~l~~Lv~l  320 (520)
                      +-.+.+.++..-...-+.|.+..|..-|+...+ -++.+.......|+..           +|.+++. +.|.|..+.+.
T Consensus       195 IieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-----------eHgreflaQeglIdlicnI  263 (524)
T KOG4413|consen  195 IIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-----------EHGREFLAQEGLIDLICNI  263 (524)
T ss_pred             HHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-----------hhhhhhcchhhHHHHHHHH
Confidence            555556666666677778888888887776444 3444556666666643           3445666 77889999888


Q ss_pred             HhcCC-ChhHHHHHH----HHHHHhccChhhHHHHHhcCChHHHHHHHhcc---CCCCcHHHHHHHHHHHHHhhCCCchH
Q 010019          321 LHAGL-SSPSLISAS----IALKAVAVNDEICKSVAENGGIDALLRCIDDS---GLQGNKTVARICCSLLSKLAGSDSNK  392 (520)
Q Consensus       321 L~~~~-~~~~~~~a~----~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~---~~~~~~~v~~~al~aL~~La~~~~~k  392 (520)
                      +.... ++--.-.+.    ..+++++..+     +.+...++.++-.+...   .++.+++.+..|..+|+.|.++.+.+
T Consensus       264 IsGadsdPfekfralmgfgkffgkeaimd-----vseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGa  338 (524)
T KOG4413|consen  264 ISGADSDPFEKFRALMGFGKFFGKEAIMD-----VSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGA  338 (524)
T ss_pred             hhCCCCCcHHHHHHHHHHHHHhcchHHhh-----cCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchh
Confidence            86432 331111111    2233444322     22222222333222211   12234589999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHhc-c-CCCHHHHHHHHHHHHHHhc
Q 010019          393 SAIIENGGMDKLIVVSAR-F-SDDASVLQEVMSIITVLSL  430 (520)
Q Consensus       393 ~~Iv~~g~l~~Lv~lL~~-~-~~~~~v~~~a~~aL~nLa~  430 (520)
                      +.+.+.| .|..-.++.+ + .+...-++.+..+|.+++.
T Consensus       339 dlllkTg-ppaaehllarafdqnahakqeaaihaLaaIag  377 (524)
T KOG4413|consen  339 DLLLKTG-PPAAEHLLARAFDQNAHAKQEAAIHALAAIAG  377 (524)
T ss_pred             HHHhccC-ChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence            8887765 4433333322 1 2222346777888888773

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.47  Score=47.80  Aligned_cols=263  Identities=13%  Similarity=0.097  Sum_probs=157.9

Q ss_pred             hHHHHHHHHHHHHHhcCChhh----HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHH
Q 010019          233 PEILNSGFAVVAASATGNEVV----KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRF  308 (520)
Q Consensus       233 ~~v~~~a~~~L~~~~~~~e~n----r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i  308 (520)
                      ..+...+|+.++.+..+++.|    -..++..|..+.++..+...++++-..|...|..++.-.+.-          ..|
T Consensus        96 asVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaal----------eai  165 (524)
T KOG4413|consen   96 ASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAAL----------EAI  165 (524)
T ss_pred             chhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHH----------HHh
Confidence            334445666666655554433    234558899999999998777788888999999998754321          245


Q ss_pred             HHcCCHHHHHH--HHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010019          309 AKIGIARALVH--SLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL  385 (520)
Q Consensus       309 ~~~g~l~~Lv~--lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~L  385 (520)
                      .+...+.++-.  +--..+ .-+...+...+-.+. .+++.....-..|-++.|..=|+.. ++  .-|...++.....|
T Consensus       166 FeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt-eD--tLVianciElvteL  241 (524)
T KOG4413|consen  166 FESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT-ED--TLVIANCIELVTEL  241 (524)
T ss_pred             cccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC-cc--eeehhhHHHHHHHH
Confidence            55555554432  222222 223334445554544 6777777777888888887777753 22  36778899999999


Q ss_pred             hCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh----cC--CHHH-HHHHHhcCcHHHHHHHHHhCCCC
Q 010019          386 AGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS----LR--SPEN-AARAMEAGSGDLAIQAMLKFPNA  458 (520)
Q Consensus       386 a~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa----~~--~~~~-~~~i~~~G~i~~lv~~L~~~~~~  458 (520)
                      +.....++-+.+.|.++.+...+...+.+|--.-.++.....+-    .-  .++. +..+.-  .++-..+...  ..+
T Consensus       242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealii--aidgsfEmiE--mnD  317 (524)
T KOG4413|consen  242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALII--AIDGSFEMIE--MND  317 (524)
T ss_pred             HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHH--HHHhhHHhhh--cCC
Confidence            98888888899999999999999755555544433333322222    11  1111 111110  1222233332  367


Q ss_pred             HHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC---c-chHHHHHHHHHHcC
Q 010019          459 QQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH---E-ICKDAATDALRDLG  514 (520)
Q Consensus       459 ~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h---~-~~~~~a~aALr~Lg  514 (520)
                      +..+..|.-++.-|- -+.+-.+.++..|-...=+.+++.+   . .-+..+-.||-+..
T Consensus       318 pdaieaAiDalGilG-SnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa  376 (524)
T KOG4413|consen  318 PDAIEAAIDALGILG-SNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA  376 (524)
T ss_pred             chHHHHHHHHHHhcc-CCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence            888999999999883 4667777777776543333333333   2 12344555555543

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.55  E-value=0.0052  Score=45.38  Aligned_cols=55  Identities=13%  Similarity=0.128  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010019          415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL  472 (520)
Q Consensus       415 ~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL  472 (520)
                      +.+++.|+++|.+++...++...... ...++.|+.+|++  ++..|+..|||+|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d--~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQD--DDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTS--SSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcC--CCHHHHHHHHHHHhcC
Confidence            57899999999999987777766644 4578888888855  5669999999999875

...

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.54  E-value=0.037  Score=58.72  Aligned_cols=247  Identities=15%  Similarity=0.150  Sum_probs=158.4

Q ss_pred             hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHH
Q 010019          253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS  332 (520)
Q Consensus       253 nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~  332 (520)
                      -|.-+.+..+.++|+++|..+..-+.-.+...+.|+..      +|+.-   ...+.+.|.|..|+.++.+. |...+.+
T Consensus       423 LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv------~fsnL---~~~fL~~~iIdvl~~~v~sK-DdaLqan  492 (743)
T COG5369         423 LRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVV------PFSNL---GAGFLEKSIIDVLVNLVMSK-DDALQAN  492 (743)
T ss_pred             HHhhccccchHHHHHHHhcCccceeeccchhhhhheee------eccch---HHHHHHhhHHHHHHHHhhcc-hhhhhhc
Confidence            46666677788889988876422222224445555443      33321   11455889999999999854 6678899


Q ss_pred             HHHHHHHhccChh--hHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC----CCchHHHHHhcCCH----H
Q 010019          333 ASIALKAVAVNDE--ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG----SDSNKSAIIENGGM----D  402 (520)
Q Consensus       333 a~~aL~~La~~~e--~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~----~~~~k~~Iv~~g~l----~  402 (520)
                      ..|.|+.|..+.+  .+-+....-|+..++++..+.    ...|++.++.+|+|+.-    +.+.++...+..-.    .
T Consensus       493 s~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp----c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk  568 (743)
T COG5369         493 SEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP----CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK  568 (743)
T ss_pred             chhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc----ccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence            9999999985432  244566777889999988762    24799999999999973    23344444443332    3


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhc-CcHHHHHHHHHh---------------------------
Q 010019          403 KLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA-GSGDLAIQAMLK---------------------------  454 (520)
Q Consensus       403 ~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~-G~i~~lv~~L~~---------------------------  454 (520)
                      .+++-++  ..+|--.++.|-.|-++++-+.+...-+.+. ..+..+-+.|-.                           
T Consensus       569 ~l~~k~e--~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l  646 (743)
T COG5369         569 RLIDKYE--ENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNL  646 (743)
T ss_pred             HHHHHHH--hcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecc
Confidence            4555566  5677777888999998887554444433321 122222222210                           


Q ss_pred             ----------------------C--CCCHHHHHHHHHHHHHHhhh---Ch------hhHHHHHhCCHHHHHHHHHHhC-c
Q 010019          455 ----------------------F--PNAQQLQRSSCFMIRNLVAR---NP------ENRKLLLSNGVEKLIRQAKENH-E  500 (520)
Q Consensus       455 ----------------------~--~~~~~vqk~A~~aL~nL~~~---~~------e~~~~l~~~G~~~lL~~~~~~h-~  500 (520)
                                            .  ..+.+.--++.|.++|+.+.   +.      |-+..+.+.|+-+.+++..... +
T Consensus       647 ~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl  726 (743)
T COG5369         647 SENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSL  726 (743)
T ss_pred             cccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcH
Confidence                                  0  12344566788999998532   22      5567788889999998877443 3


Q ss_pred             chHHHHHHHHHHcCC
Q 010019          501 ICKDAATDALRDLGL  515 (520)
Q Consensus       501 ~~~~~a~aALr~Lg~  515 (520)
                      +..+.+.-||.++.+
T Consensus       727 ~vrek~~taL~~l~l  741 (743)
T COG5369         727 IVREKIGTALENLRL  741 (743)
T ss_pred             HHHHHHHHHHHhhhc
Confidence            678889999988754

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=96.53  E-value=0.0074  Score=48.80  Aligned_cols=88  Identities=14%  Similarity=0.202  Sum_probs=65.8

Q ss_pred             hHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHH
Q 010019          356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPEN  435 (520)
Q Consensus       356 v~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~  435 (520)
                      |+.|++.|...   +++.+...++.+|+.+-          ....++.|+++++  .+++.|+..++.+|..+-  +   
T Consensus         1 i~~L~~~l~~~---~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~--d~~~~vr~~a~~aL~~i~--~---   60 (88)
T PF13646_consen    1 IPALLQLLQND---PDPQVRAEAARALGELG----------DPEAIPALIELLK--DEDPMVRRAAARALGRIG--D---   60 (88)
T ss_dssp             HHHHHHHHHTS---SSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHT--SSSHHHHHHHHHHHHCCH--H---
T ss_pred             CHHHHHHHhcC---CCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHc--CCCHHHHHHHHHHHHHhC--C---
Confidence            57888988543   24689999999998442          1135899999996  789999999999999763  1   


Q ss_pred             HHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010019          436 AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIR  470 (520)
Q Consensus       436 ~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~  470 (520)
                            ...++.+.++|.. +++..++..|.++|.
T Consensus        61 ------~~~~~~L~~~l~~-~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 ------PEAIPALIKLLQD-DDDEVVREAAAEALG   88 (88)
T ss_dssp             ------HHTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHcC-CCcHHHHHHHHhhcC
Confidence                  2367888888865 356777888888773

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.52  E-value=0.0094  Score=63.02  Aligned_cols=168  Identities=10%  Similarity=0.046  Sum_probs=112.2

Q ss_pred             HhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC
Q 010019          214 RTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD  293 (520)
Q Consensus       214 ~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd  293 (520)
                      .+....++|+++|+.+  +.-+..-+...+.|....-+.-+..|.+.|.|..|+.++.+.++..+.+..|+|+.|..+++
T Consensus       428 ~d~~I~elLi~~Ls~P--eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq  505 (743)
T COG5369         428 LDYPIVELLIDALSNP--EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ  505 (743)
T ss_pred             cccchHHHHHHHhcCc--cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc
Confidence            3455688899999742  22222334445555555556678888999999999999998777888889999999999987


Q ss_pred             cchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC----hhhHHHHHhcCCh----HHHHHHHhc
Q 010019          294 DQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN----DEICKSVAENGGI----DALLRCIDD  365 (520)
Q Consensus       294 ~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~----~e~~~~i~~~Ggv----~~Ll~lL~~  365 (520)
                      ....|        ++.+.-|+..++++... ++-.++..++..|+|+..+    ++.+......---    +.|++.+..
T Consensus       506 ~~ekf--------~~Lakig~~kvl~~~ND-pc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~  576 (743)
T COG5369         506 KNEKF--------KFLAKIGVEKVLSYTND-PCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEE  576 (743)
T ss_pred             chhhh--------hhHHhcCHHHHHHHhcC-cccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHh
Confidence            65433        34445678888888654 3346888999999999852    3334333333222    234444443


Q ss_pred             cCCCCcHHHHHHHHHHHHHhhCCCchHHHHH
Q 010019          366 SGLQGNKTVARICCSLLSKLAGSDSNKSAII  396 (520)
Q Consensus       366 ~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv  396 (520)
                      .    |+-...+.|..|-++|.++++...++
T Consensus       577 ~----np~~i~~~~yilv~~aa~d~~l~~~V  603 (743)
T COG5369         577 N----NPMEILEGCYILVRNAACDDTLDYIV  603 (743)
T ss_pred             c----CchhhhhhHHHHHHHHhccchHHHHH
Confidence            2    33456677888888887777666554

>TIGR02270 conserved hypothetical protein

Probab=96.45  E-value=0.4  Score=50.76  Aligned_cols=151  Identities=17%  Similarity=0.090  Sum_probs=87.1

Q ss_pred             CcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchh
Q 010019          218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV  297 (520)
Q Consensus       218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~  297 (520)
                      +++.++..|... ++.++...++.++..  ...+         .++..|+..|......+...+..+|..+-        
T Consensus        55 a~~~L~~aL~~d-~~~ev~~~aa~al~~--~~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------  114 (410)
T TIGR02270        55 ATELLVSALAEA-DEPGRVACAALALLA--QEDA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG--------  114 (410)
T ss_pred             HHHHHHHHHhhC-CChhHHHHHHHHHhc--cCCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence            456666666432 334554444444321  1111         13678888887765567777777776322        


Q ss_pred             hhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHH
Q 010019          298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARI  377 (520)
Q Consensus       298 ~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~  377 (520)
                                  ..+..+.|+.+|+. .++.+...++.++..-           .....+.++.+|++    .++.|...
T Consensus       115 ------------~~~a~~~L~~~L~~-~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d----~d~~Vra~  166 (410)
T TIGR02270       115 ------------GRQAEPWLEPLLAA-SEPPGRAIGLAALGAH-----------RHDPGPALEAALTH----EDALVRAA  166 (410)
T ss_pred             ------------chHHHHHHHHHhcC-CChHHHHHHHHHHHhh-----------ccChHHHHHHHhcC----CCHHHHHH
Confidence                        12346777777754 3455555555444431           11223577777764    23478888


Q ss_pred             HHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010019          378 CCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVL  428 (520)
Q Consensus       378 al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nL  428 (520)
                      |+.+|+.|-          ....++.|..++.  +.++.|+..|.++|..+
T Consensus       167 A~raLG~l~----------~~~a~~~L~~al~--d~~~~VR~aA~~al~~l  205 (410)
T TIGR02270       167 ALRALGELP----------RRLSESTLRLYLR--DSDPEVRFAALEAGLLA  205 (410)
T ss_pred             HHHHHHhhc----------cccchHHHHHHHc--CCCHHHHHHHHHHHHHc
Confidence            888887654          2245566776666  66788888888887655

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.43  E-value=0.083  Score=58.64  Aligned_cols=227  Identities=13%  Similarity=0.103  Sum_probs=153.4

Q ss_pred             ChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhH
Q 010019          250 NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS  329 (520)
Q Consensus       250 ~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~  329 (520)
                      ...-|...++.|+...|+.+...........+..+|..       .++|..-     ..  ...++++.+++..-...--
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~-------~i~f~~~-----~~--~~v~~~~~s~~~~d~~~~e  558 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAG-------KIDFPGE-----RS--YEVVKPLDSALHNDEKGLE  558 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhh-------hcCCCCC-----ch--hhhhhhhcchhhhhHHHHH
Confidence            44456677888999999988876655555555555551       1222110     00  2356777777654221122


Q ss_pred             HHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchH-HHHHh-cCCHHHHHH
Q 010019          330 LISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK-SAIIE-NGGMDKLIV  406 (520)
Q Consensus       330 ~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k-~~Iv~-~g~l~~Lv~  406 (520)
                      ..+.+.+|.||+. ++..+++|.+.-+++.+-+++..  +  ++-+++.++..+.||..++..- ..|++ ..+++....
T Consensus       559 n~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~e--e--~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~  634 (748)
T KOG4151|consen  559 NFEALEALTNLASISESDRQKILKEKALGKIEELMTE--E--NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNL  634 (748)
T ss_pred             HHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhc--c--cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHH
Confidence            3567889999994 56668888888777776666554  2  3579999999999999766444 45666 456777777


Q ss_pred             HHhccCCCHHHHHHHHHHHHHHhcCCHHHHHH-HHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHh
Q 010019          407 VSARFSDDASVLQEVMSIITVLSLRSPENAAR-AMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLS  485 (520)
Q Consensus       407 lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~-i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~  485 (520)
                      .+.  .......-++++++..++.-....+.. .-...+.+.++.++..  .+.++|......+.|+.....+....+..
T Consensus       635 ~~e--~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~--~~~~~qhrgl~~~ln~~~~~~ei~~~~~~  710 (748)
T KOG4151|consen  635 NLE--VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQD--EDDEIQHRGLVIILNLFEALFEIAEKIFE  710 (748)
T ss_pred             HHH--hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcC--chhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence            776  356667778888888777645445542 2234567778877754  57899999999999987778899999988


Q ss_pred             CCHHHHHHHHHHh
Q 010019          486 NGVEKLIRQAKEN  498 (520)
Q Consensus       486 ~G~~~lL~~~~~~  498 (520)
                      ..+..++......
T Consensus       711 ~~~~~~l~~~~~~  723 (748)
T KOG4151|consen  711 TEVMELLSGLQKL  723 (748)
T ss_pred             chHHHHHHHHHHh
Confidence            8888777766444

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=96.40  E-value=0.076  Score=55.48  Aligned_cols=148  Identities=15%  Similarity=0.173  Sum_probs=115.0

Q ss_pred             hhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHH
Q 010019          327 SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIV  406 (520)
Q Consensus       327 ~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~  406 (520)
                      +++...+...++++..+.+..+.+.+.+.--.++..|......  ..=.++|+..++.+..-+.+...+ ..|.+..++.
T Consensus        39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~--~~ER~QALkliR~~l~~~~~~~~~-~~~vvralva  115 (371)
T PF14664_consen   39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKN--DVEREQALKLIRAFLEIKKGPKEI-PRGVVRALVA  115 (371)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCC--hHHHHHHHHHHHHHHHhcCCcccC-CHHHHHHHHH
Confidence            6788888999999999999999999998777788888764332  133468999999987554333333 4467788999


Q ss_pred             HHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHh
Q 010019          407 VSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLS  485 (520)
Q Consensus       407 lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~  485 (520)
                      +..  ..+...+..|..+|+.|+..+|+.   +.++||+..+++.+..+  ...+....+.++-.+ -.+|..|+++..
T Consensus       116 iae--~~~D~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l~d~--~~~~~~~l~~~lL~l-Ld~p~tR~yl~~  186 (371)
T PF14664_consen  116 IAE--HEDDRLRRICLETLCELALLNPEL---VAECGGIRVLLRALIDG--SFSISESLLDTLLYL-LDSPRTRKYLRP  186 (371)
T ss_pred             HHh--CCchHHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHHHhc--cHhHHHHHHHHHHHH-hCCcchhhhhcC
Confidence            888  567789999999999999988864   56789999999999763  344777788888887 467888887775

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.40  E-value=0.0057  Score=45.16  Aligned_cols=54  Identities=22%  Similarity=0.105  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010019          373 TVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVL  428 (520)
Q Consensus       373 ~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nL  428 (520)
                      .+...|+.+|++++........-.....++.|+.+|+  .+++.|+..||++|.+|
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~--d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQ--DDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHhcC
Confidence            5789999999999865433333344468999999997  66789999999999875

...

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.99  E-value=0.39  Score=54.77  Aligned_cols=195  Identities=14%  Similarity=0.143  Sum_probs=121.3

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCC----hhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCC----cHHHHH
Q 010019          305 ARRFAKIGIARALVHSLHAGLS----SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQG----NKTVAR  376 (520)
Q Consensus       305 a~~i~~~g~l~~Lv~lL~~~~~----~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~----~~~v~~  376 (520)
                      +..+.+.||+..|+.+|....+    .+....++..|.+.+--..|++++++.|+++.|+..+.......    ..++.+
T Consensus       110 ~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E  189 (802)
T PF13764_consen  110 ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE  189 (802)
T ss_pred             HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence            3456678999999999987443    35666677777778877899999999999999999886432221    246777


Q ss_pred             HHHHHHHHhhC---CCchHH--HHHhcCC--------HHHHHHHHhcc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 010019          377 ICCSLLSKLAG---SDSNKS--AIIENGG--------MDKLIVVSARF--SDDASVLQEVMSIITVLSLRSPENAARAME  441 (520)
Q Consensus       377 ~al~aL~~La~---~~~~k~--~Iv~~g~--------l~~Lv~lL~~~--~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~  441 (520)
                      ..+.++..|..   .+....  ......+        +..+++.+...  ..++.+.+..+.+|-.|+.++++..+.+++
T Consensus       190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~  269 (802)
T PF13764_consen  190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE  269 (802)
T ss_pred             HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence            77777776642   111111  1111222        66666666532  246899999999999999999998888875


Q ss_pred             cCcHHHHHHH--HH-hCCCCHHHHHHH-HHHHHHHhhhC---hhhHHHHHhCCHHHHHHHHHHhC-cch
Q 010019          442 AGSGDLAIQA--ML-KFPNAQQLQRSS-CFMIRNLVARN---PENRKLLLSNGVEKLIRQAKENH-EIC  502 (520)
Q Consensus       442 ~G~i~~lv~~--L~-~~~~~~~vqk~A-~~aL~nL~~~~---~e~~~~l~~~G~~~lL~~~~~~h-~~~  502 (520)
                      .  ....++.  +. .++.+..+.-+. |....++ -++   ...+..+++.|+.......+..| |..
T Consensus       270 ~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I-~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~  335 (802)
T PF13764_consen  270 H--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGI-PNNSNGNRLKDKILESGIVQDAIDYLLKHFPSL  335 (802)
T ss_pred             H--HHHhcChhhcccccCchHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHhhHHHHHHHHHHHhCccc
Confidence            3  2222221  11 122222222222 2222222 122   36678889999987555555444 643

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=95.84  E-value=4.1  Score=45.45  Aligned_cols=250  Identities=17%  Similarity=0.174  Sum_probs=137.5

Q ss_pred             CcHHHHHHHHHHHHHhhcccccc--hhHHh-cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHH
Q 010019          188 GSKRVLDSCLKTMALLVHDVQST--ETFRT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDE  264 (520)
Q Consensus       188 ~~~~~~~~al~~La~l~~~~~~~--~~i~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~  264 (520)
                      ..+.+...|+..++++..--...  ..++. .|  -.|.+.|.  .+.++++-.-+.++..++.-+...+-.---.+.+|
T Consensus       811 ksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylg--eeypEvLgsILgAikaI~nvigm~km~pPi~dllP  886 (1172)
T KOG0213|consen  811 KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLG--EEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLP  886 (1172)
T ss_pred             CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcC--cccHHHHHHHHHHHHHHHHhccccccCCChhhhcc
Confidence            45667777777777764210000  11111 11  12334442  34677776666666655533322222112347899


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccCh
Q 010019          265 LILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND  344 (520)
Q Consensus       265 ~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~  344 (520)
                      .|..+|++....++.+....+..+|......++       +|.-+.  ..--|+++|+++. .++.+++..++++++.  
T Consensus       887 rltPILknrheKVqen~IdLvg~IadrgpE~v~-------aREWMR--IcfeLlelLkahk-K~iRRaa~nTfG~Iak--  954 (1172)
T KOG0213|consen  887 RLTPILKNRHEKVQENCIDLVGTIADRGPEYVS-------AREWMR--ICFELLELLKAHK-KEIRRAAVNTFGYIAK--  954 (1172)
T ss_pred             cchHhhhhhHHHHHHHHHHHHHHHHhcCcccCC-------HHHHHH--HHHHHHHHHHHHH-HHHHHHHHhhhhHHHH--
Confidence            999999987778888899999988865433331       233332  3456788888764 6788888888888762  


Q ss_pred             hhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHH-h-cCCHHHHHHHHhccC-CCHHHHHHH
Q 010019          345 EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAII-E-NGGMDKLIVVSARFS-DDASVLQEV  421 (520)
Q Consensus       345 e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv-~-~g~l~~Lv~lL~~~~-~~~~v~~~a  421 (520)
                          .   -|--+.|..+|..- +.+  +-+...|.+++         -+|+ + +|-...|-.+|+.|. .+..||.-.
T Consensus       955 ----a---IGPqdVLatLlnnL-kvq--eRq~RvcTtva---------IaIVaE~c~pFtVLPalmneYrtPe~nVQnGV 1015 (1172)
T KOG0213|consen  955 ----A---IGPQDVLATLLNNL-KVQ--ERQNRVCTTVA---------IAIVAETCGPFTVLPALMNEYRTPEANVQNGV 1015 (1172)
T ss_pred             ----h---cCHHHHHHHHHhcc-hHH--HHHhchhhhhh---------hhhhhhhcCchhhhHHHHhhccCchhHHHHhH
Confidence                1   12233444455432 111  23334444332         1222 2 233455555666553 456788877


Q ss_pred             HHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 010019          422 MSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR  475 (520)
Q Consensus       422 ~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~  475 (520)
                      +.+|+.+-..-.+..+.-+ .-..|.|-.+|..  .|..-..-|+.+|++|+-+
T Consensus      1016 Lkalsf~FeyigemskdYi-yav~PlleDAlmD--rD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1016 LKALSFMFEYIGEMSKDYI-YAVTPLLEDALMD--RDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred             HHHHHHHHHHHHHHhhhHH-HHhhHHHHHhhcc--ccHHHHHHHHHHHHHHhcC
Confidence            8888777643222222222 1245677777744  3444444588899999754

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.83  E-value=0.38  Score=51.43  Aligned_cols=168  Identities=14%  Similarity=0.167  Sum_probs=118.2

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHH
Q 010019          315 RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSA  394 (520)
Q Consensus       315 ~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~  394 (520)
                      ..+.+++.++. ...+..+...|..|+.+......+....|+..|..++.++....+.++...++.++..|....-..-.
T Consensus        86 ~~i~e~l~~~~-~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~  164 (713)
T KOG2999|consen   86 KRIMEILTEGN-NISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE  164 (713)
T ss_pred             HHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence            44556677665 33455588899999999999999999999999999998864422457888888888887643321112


Q ss_pred             HHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019          395 IIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (520)
Q Consensus       395 Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~  474 (520)
                      .+...++..+....+....+..+...|+..|-++...++...+.+.++--++.++..++.  ++..+|..|...|..+..
T Consensus       165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~--~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQV--SNQRIQTCAIALLNALFR  242 (713)
T ss_pred             ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHh--cchHHHHHHHHHHHHHHh
Confidence            222233434444433223456788889999999999888888889888889999999976  578888887777766654


Q ss_pred             h-ChhhHHHHHh
Q 010019          475 R-NPENRKLLLS  485 (520)
Q Consensus       475 ~-~~e~~~~l~~  485 (520)
                      + .++-+..+.+
T Consensus       243 ~a~~~~R~~~~~  254 (713)
T KOG2999|consen  243 KAPDDKRFEMAK  254 (713)
T ss_pred             hCChHHHHHHHH
Confidence            4 3344444443

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=95.73  E-value=1.8  Score=49.11  Aligned_cols=271  Identities=12%  Similarity=0.124  Sum_probs=160.7

Q ss_pred             cHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHH
Q 010019          189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE  268 (520)
Q Consensus       189 ~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~  268 (520)
                      ..+++..-..+|+..+.-++...+-.++...|.++.+...+++++.+...+-.++..++. .+ ++..-+..-.||.|++
T Consensus       543 s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~-~~~g~m~e~~iPslis  620 (1005)
T KOG2274|consen  543 SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IA-ANYGPMQERLIPSLIS  620 (1005)
T ss_pred             cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HH-HhhcchHHHHHHHHHH
Confidence            456666677888887765544455567778899999888888898777776666666553 22 2233344567999999


Q ss_pred             HHhcCCh----HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cC
Q 010019          269 ILSRQRN----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VN  343 (520)
Q Consensus       269 lL~~~~~----~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~  343 (520)
                      +|.....    ....-+...|..+.++..+..+        +.+.. -+.|++.+..-...|.+.+.++--+|+.+. ..
T Consensus       621 il~~~~~~~~~~l~~~aidvLttvvr~tp~pL~--------~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~  691 (1005)
T KOG2274|consen  621 VLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLP--------NLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVT  691 (1005)
T ss_pred             HHcCcccccCchhhHHHHHHHHHHHhcCCCCcc--------HHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence            9998652    5555577777766665433221        13332 368888888743336778888888888776 44


Q ss_pred             hhhHHHHHhcCChH--HHHHHHhccCCCCcHHHHHHHHHHHHHhh-------C--CCchHHHHHhcCCHHHHHHHHhccC
Q 010019          344 DEICKSVAENGGID--ALLRCIDDSGLQGNKTVARICCSLLSKLA-------G--SDSNKSAIIENGGMDKLIVVSARFS  412 (520)
Q Consensus       344 ~e~~~~i~~~Ggv~--~Ll~lL~~~~~~~~~~v~~~al~aL~~La-------~--~~~~k~~Iv~~g~l~~Lv~lL~~~~  412 (520)
                      .+....-...+|..  -++..+..-.+.   +.-..++...+.|.       +  -+.|-..|.+     .++.=|.. .
T Consensus       692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp---~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~-----Avisrmq~-a  762 (1005)
T KOG2274|consen  692 LEQLLTWHDEPGHNLWYIMQVLSQLLDP---ETSDSAAAFVGPLVLTLITHASSELGPNLDQILR-----AVISRLQQ-A  762 (1005)
T ss_pred             HHHHHhhccCCCccHHHHHHHHHHHcCC---ccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHH-----HHHHHHHH-h
Confidence            44433344556655  555555442221   12222333333332       1  1233333433     33333322 3


Q ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHh----cCcHHHHHHHHHhCCCCH-------H---HHHHHHHHHHHHhh-hCh
Q 010019          413 DDASVLQEVMSIITVLSLRSPENAARAME----AGSGDLAIQAMLKFPNAQ-------Q---LQRSSCFMIRNLVA-RNP  477 (520)
Q Consensus       413 ~~~~v~~~a~~aL~nLa~~~~~~~~~i~~----~G~i~~lv~~L~~~~~~~-------~---vqk~A~~aL~nL~~-~~~  477 (520)
                      ...++..+-..+++.|...+++..-.+..    -+|-+.+--.|....++.       +   --+.-|.|+.++.+ +++
T Consensus       763 e~lsviQsLi~VfahL~~t~~~~~l~FL~Slp~~~g~~AlefVMteW~srqhl~~g~ye~kv~i~alc~al~~~~~~ddk  842 (1005)
T KOG2274|consen  763 ETLSVIQSLIMVFAHLVHTDLDQLLNFLSSLPGPTGEPALEFVMTEWTSRQHLYFGEYEGKVSIKALCKALQHLISTDDK  842 (1005)
T ss_pred             hhHHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHhhhccCCh
Confidence            47888899999999999888776555443    355566555564433221       2   23557888888864 344


Q ss_pred             hh
Q 010019          478 EN  479 (520)
Q Consensus       478 e~  479 (520)
                      ..
T Consensus       843 rL  844 (1005)
T KOG2274|consen  843 RL  844 (1005)
T ss_pred             hh
Confidence            43

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=95.70  E-value=1.3  Score=44.62  Aligned_cols=218  Identities=17%  Similarity=0.221  Sum_probs=135.1

Q ss_pred             HHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhccChhhHHHHHhc-CChHH
Q 010019          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVNDEICKSVAEN-GGIDA  358 (520)
Q Consensus       281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~-~~~~~~~a~~aL~~La~~~e~~~~i~~~-Ggv~~  358 (520)
                      |...|.+|..+.+.|-.         ..++.-+-..++++++.+- +..++-.....+|-|+.+++..+.|-.- .-+..
T Consensus       169 av~cl~~l~~~~e~R~i---------~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~d  239 (432)
T COG5231         169 AVSCLSNLEFDVEKRKI---------EWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIND  239 (432)
T ss_pred             HHHHHhhhhhhHHHHHH---------HHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            56677777776543321         2235556778888888765 4567788889999999888876443321 23566


Q ss_pred             HHHHHhccCCCCcHHHHHHHHHHHHHhhC-CC-chHHHHHhcCCHHHHHHHH-hccCCCHHHHHHHHHHHHHH-------
Q 010019          359 LLRCIDDSGLQGNKTVARICCSLLSKLAG-SD-SNKSAIIENGGMDKLIVVS-ARFSDDASVLQEVMSIITVL-------  428 (520)
Q Consensus       359 Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~-~~k~~Iv~~g~l~~Lv~lL-~~~~~~~~v~~~a~~aL~nL-------  428 (520)
                      |+.+.+....   ..|.+-||+.+.|+.. .+ ..-....-.|-+.+-+++| ++.-.+++++..--..=..|       
T Consensus       240 li~iVk~~~k---eKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l  316 (432)
T COG5231         240 LIAIVKERAK---EKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL  316 (432)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence            6777665332   3799999999999985 32 2222333445455555544 43333444433221111111       


Q ss_pred             hc--------------CCH---------HHHHHHHhcC--cHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHH
Q 010019          429 SL--------------RSP---------ENAARAMEAG--SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLL  483 (520)
Q Consensus       429 a~--------------~~~---------~~~~~i~~~G--~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l  483 (520)
                      |.              -+|         +|...+.+.+  .+..+.+.++....+. ...-||.-|..++.-.||.+..+
T Consensus       317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt-~i~vAc~Di~~~Vr~~PE~~~vl  395 (432)
T COG5231         317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNT-WICVACSDIFQLVRASPEINAVL  395 (432)
T ss_pred             hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCc-eEeeeHhhHHHHHHhCchHHHHH
Confidence            10              011         3455555443  3567777777654332 33468889999987899999999


Q ss_pred             HhCCHHHHHHHHHHhCc--chHHHHHHHHHH
Q 010019          484 LSNGVEKLIRQAKENHE--ICKDAATDALRD  512 (520)
Q Consensus       484 ~~~G~~~lL~~~~~~h~--~~~~~a~aALr~  512 (520)
                      ...|+-..|..++ +|+  +..-+|-.|+..
T Consensus       396 ~Kyg~k~~im~L~-nh~d~~VkfeAl~a~q~  425 (432)
T COG5231         396 SKYGVKEIIMNLI-NHDDDDVKFEALQALQT  425 (432)
T ss_pred             HHhhhHHHHHHHh-cCCCchhhHHHHHHHHH
Confidence            9999999999988 675  456677766654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.70  E-value=0.79  Score=52.56  Aligned_cols=209  Identities=13%  Similarity=0.094  Sum_probs=135.4

Q ss_pred             HhcCCHHHHHHHHhcCChHHHHHHHHHHH--HhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC--ChhHHHHH
Q 010019          258 MELKIDELILEILSRQRNDSIQSLYDAIR--VLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--SSPSLISA  333 (520)
Q Consensus       258 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~--~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~--~~~~~~~a  333 (520)
                      ...|+.|.++++|++...++..- .-.|+  -|+.|+.+++          .+++.+|-.-.+..|..++  +++-..-+
T Consensus       509 LsVGIFPYVLKLLQS~a~ELrpi-LVFIWAKILAvD~SCQ~----------dLvKe~g~~YF~~vL~~~~~~~~Eqrtma  577 (1387)
T KOG1517|consen  509 LSVGIFPYVLKLLQSSARELRPI-LVFIWAKILAVDPSCQA----------DLVKENGYKYFLQVLDPSQAIPPEQRTMA  577 (1387)
T ss_pred             hccchHHHHHHHhccchHhhhhh-HHHHHHHHHhcCchhHH----------HHHhccCceeEEEEecCcCCCCHHHHHHH
Confidence            45699999999999875444333 22232  4788877766          6887777777777776633  34556667


Q ss_pred             HHHHHHhccChh-hHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhcc
Q 010019          334 SIALKAVAVNDE-ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARF  411 (520)
Q Consensus       334 ~~aL~~La~~~e-~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~  411 (520)
                      +..|+.+..+-- -.+...+.+.+...++.|.+.+   .+-+..=+|-+|+.|=. .++.|-.=++.++.+.|+.+|.  
T Consensus       578 AFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~---~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls--  652 (1387)
T KOG1517|consen  578 AFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP---EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS--  652 (1387)
T ss_pred             HHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc---cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc--
Confidence            778888875422 2334456666777788887642   23455556777888854 4566655577889999999998  


Q ss_pred             CCCHHHHHHHHHHHHHHhcC----CHHHHHHH------------HhcCcH---HHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010019          412 SDDASVLQEVMSIITVLSLR----SPENAARA------------MEAGSG---DLAIQAMLKFPNAQQLQRSSCFMIRNL  472 (520)
Q Consensus       412 ~~~~~v~~~a~~aL~nLa~~----~~~~~~~i------------~~~G~i---~~lv~~L~~~~~~~~vqk~A~~aL~nL  472 (520)
                      ..-|+|+..|+-||..+-..    .+++...+            +|.-..   -.++.+++.  +.+-|.++...++..+
T Consensus       653 D~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsd--gsplvr~ev~v~ls~~  730 (1387)
T KOG1517|consen  653 DPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSD--GSPLVRTEVVVALSHF  730 (1387)
T ss_pred             CccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhc--cchHHHHHHHHHHHHH
Confidence            56899999999999988653    23332222            111111   244445544  4577777788888888


Q ss_pred             hhhChhhHHHHH
Q 010019          473 VARNPENRKLLL  484 (520)
Q Consensus       473 ~~~~~e~~~~l~  484 (520)
                      +.++..+...+.
T Consensus       731 ~~g~~~~~~~va  742 (1387)
T KOG1517|consen  731 VVGYVSHLKVVA  742 (1387)
T ss_pred             HHhhHHHhHHHh
Confidence            776665544443

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=95.60  E-value=3.9  Score=45.58  Aligned_cols=229  Identities=17%  Similarity=0.145  Sum_probs=136.8

Q ss_pred             HHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHH-hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh---h
Q 010019          178 VCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR-TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV---V  253 (520)
Q Consensus       178 Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~-~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~---n  253 (520)
                      |.+.|..   ..++++-..|++|.++.+--.-+.-.- -.+.+|.|..+|++  ...++|+.++..++.+|...++   .
T Consensus       846 LyEylge---eypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILkn--rheKVqen~IdLvg~IadrgpE~v~a  920 (1172)
T KOG0213|consen  846 LYEYLGE---EYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKN--RHEKVQENCIDLVGTIADRGPEYVSA  920 (1172)
T ss_pred             HHHhcCc---ccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhh--hHHHHHHHHHHHHHHHHhcCcccCCH
Confidence            4444543   477888777777777654221101110 13668888999974  4689999999999999865443   1


Q ss_pred             HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHH
Q 010019          254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA  333 (520)
Q Consensus       254 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a  333 (520)
                      |+-+   -+.--|+++|+++..++.++|..++..++.                .|+   --+.|..||..-.-.+-+...
T Consensus       921 REWM---RIcfeLlelLkahkK~iRRaa~nTfG~Iak----------------aIG---PqdVLatLlnnLkvqeRq~Rv  978 (1172)
T KOG0213|consen  921 REWM---RICFELLELLKAHKKEIRRAAVNTFGYIAK----------------AIG---PQDVLATLLNNLKVQERQNRV  978 (1172)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH----------------hcC---HHHHHHHHHhcchHHHHHhch
Confidence            2222   134568899999888999999998887663                333   234444444432212334445


Q ss_pred             HHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCCchHHHHHhcCCHHHHHHHHhcc
Q 010019          334 SIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSDSNKSAIIENGGMDKLIVVSARF  411 (520)
Q Consensus       334 ~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La--~~~~~k~~Iv~~g~l~~Lv~lL~~~  411 (520)
                      |.++. ++.-.|.|      |-..+|=.+|+++ ..++..|+.-.+.+|+-+-  ...-.+.-|-  -..|.|-.+|.  
T Consensus       979 cTtva-IaIVaE~c------~pFtVLPalmneY-rtPe~nVQnGVLkalsf~FeyigemskdYiy--av~PlleDAlm-- 1046 (1172)
T KOG0213|consen  979 CTTVA-IAIVAETC------GPFTVLPALMNEY-RTPEANVQNGVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALM-- 1046 (1172)
T ss_pred             hhhhh-hhhhhhhc------CchhhhHHHHhhc-cCchhHHHHhHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhc--
Confidence            55443 22222322      3334555566665 2344567776666665553  1223344443  25677888886  


Q ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHH
Q 010019          412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAM  452 (520)
Q Consensus       412 ~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L  452 (520)
                      ..++.-+.-|+.++.+|+++.+       .-|..+.++.+|
T Consensus      1047 DrD~vhRqta~~~I~Hl~Lg~~-------g~g~eda~iHLL 1080 (1172)
T KOG0213|consen 1047 DRDLVHRQTAMNVIKHLALGVP-------GTGCEDALIHLL 1080 (1172)
T ss_pred             cccHHHHHHHHHHHHHHhcCCC-------CcCcHHHHHHHH
Confidence            5567777889999999998532       235566666655

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.44  E-value=1.8  Score=48.00  Aligned_cols=214  Identities=11%  Similarity=0.137  Sum_probs=136.6

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhh
Q 010019          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVAS  299 (520)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~  299 (520)
                      +.++.+|++  ..+-+...|+.++..++.+.++.   +.  .+.|.|++=|...+..++.+|..+++-|++-+ ++.   
T Consensus       147 ~Dv~tLL~s--skpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLeDpDp~V~SAAV~VICELArKn-Pkn---  215 (877)
T KOG1059|consen  147 DDVFTLLNS--SKPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKN-PQN---  215 (877)
T ss_pred             HHHHHHHhc--CchHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhC-Ccc---
Confidence            446667753  34556667777777777665432   22  36789999998877799999999999999754 221   


Q ss_pred             hhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHH
Q 010019          300 QVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARIC  378 (520)
Q Consensus       300 ~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~a  378 (520)
                              .  .-.-|.+..+|...++.=++.......++|+ ..+...+     ..+++|.++|.+...+   .++-+|
T Consensus       216 --------y--L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~Am---SLlYEC  277 (877)
T KOG1059|consen  216 --------Y--LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAM---SLLYEC  277 (877)
T ss_pred             --------c--ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHH---HHHHHH
Confidence                    1  1245888899987766545566667777777 4444333     3467899999764332   566666


Q ss_pred             HHHHHHh--h-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhC
Q 010019          379 CSLLSKL--A-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF  455 (520)
Q Consensus       379 l~aL~~L--a-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~  455 (520)
                      ..++-.-  + |.+++-..| + =++..|-.++.  .+++.++.-+|-+++-+.-.+|...++-     -+.+++.|.. 
T Consensus       278 vNTVVa~s~s~g~~d~~asi-q-LCvqKLr~fie--dsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~D-  347 (877)
T KOG1059|consen  278 VNTVVAVSMSSGMSDHSASI-Q-LCVQKLRIFIE--DSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDD-  347 (877)
T ss_pred             HHHheeehhccCCCCcHHHH-H-HHHHHHhhhhh--cCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhcc-
Confidence            6665333  2 333333322 1 13455555555  5678888888888888887676654432     2566777754 


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q 010019          456 PNAQQLQRSSCFMIRNLV  473 (520)
Q Consensus       456 ~~~~~vqk~A~~aL~nL~  473 (520)
                       .|..+.-.|.-++.-|+
T Consensus       348 -kD~SIRlrALdLl~gmV  364 (877)
T KOG1059|consen  348 -KDESIRLRALDLLYGMV  364 (877)
T ss_pred             -CCchhHHHHHHHHHHHh
Confidence             46667777777777665

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.41  E-value=1.5  Score=49.03  Aligned_cols=226  Identities=12%  Similarity=0.116  Sum_probs=121.3

Q ss_pred             CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhc------------------CChHHHHHHHHHHHHhcCCC
Q 010019          231 EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR------------------QRNDSIQSLYDAIRVLLTPD  292 (520)
Q Consensus       231 ~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~------------------~~~~~~~~a~~aL~~Ls~~d  292 (520)
                      .+..+.+.|+.+|+.-....+.|-..+    ++..|+.++..                  .+..+.+.|...+..|....
T Consensus       306 ~~~~LrvlainiLgkFL~n~d~NirYv----aLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~  381 (866)
T KOG1062|consen  306 SNSGLRVLAINILGKFLLNRDNNIRYV----ALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES  381 (866)
T ss_pred             CCchHHHHHHHHHHHHhcCCccceeee----ehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc
Confidence            356777778888877655444443222    34444444443                  33344444555555444322


Q ss_pred             CcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc--cChhhHHH-------------HHhcCChH
Q 010019          293 DDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA--VNDEICKS-------------VAENGGID  357 (520)
Q Consensus       293 d~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La--~~~e~~~~-------------i~~~Ggv~  357 (520)
                      .           .+.|     +..|+..|... +++.+.+.+.-+..++  ..++++..             ++....+.
T Consensus       382 N-----------v~~m-----v~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~  444 (866)
T KOG1062|consen  382 N-----------VRVM-----VKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVN  444 (866)
T ss_pred             c-----------HHHH-----HHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHH
Confidence            1           1223     45567777665 6677777777777776  23443322             22334456


Q ss_pred             HHHHHHhccC-CC--------------------CcHHHHHHHHHHHHHhh---CCC---chHHHHHhcCCHHHHHHHHhc
Q 010019          358 ALLRCIDDSG-LQ--------------------GNKTVARICCSLLSKLA---GSD---SNKSAIIENGGMDKLIVVSAR  410 (520)
Q Consensus       358 ~Ll~lL~~~~-~~--------------------~~~~v~~~al~aL~~La---~~~---~~k~~Iv~~g~l~~Lv~lL~~  410 (520)
                      .++.++.... +.                    .+..++..+.|+|+--.   .++   +.-..+-+...+..|..++..
T Consensus       445 nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~  524 (866)
T KOG1062|consen  445 NLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMS  524 (866)
T ss_pred             HHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHh
Confidence            6777776541 11                    11244555556655432   111   111123344567889999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHh
Q 010019          411 FSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLS  485 (520)
Q Consensus       411 ~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~  485 (520)
                      |+.+..++.+++.+|.-|+.|-+....+      ++.++.-... +-+.++|..|.-.=.-+ ..+...++.+++
T Consensus       525 ~~s~~~tk~yal~Al~KLSsr~~s~~~r------i~~lI~~~~~-s~~~elQQRa~E~~~l~-~~~~~lr~siLe  591 (866)
T KOG1062|consen  525 HSSDSTTKGYALTALLKLSSRFHSSSER------IKQLISSYKS-SLDTELQQRAVEYNALF-AKDKHLRKSILE  591 (866)
T ss_pred             ccchHHHHHHHHHHHHHHHhhccccHHH------HHHHHHHhcc-cccHHHHHHHHHHHHHH-HHHHHHHHHhcc
Confidence            9889999999999999999875443221      2223333322 23566776665432222 344555555543

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.36  E-value=0.18  Score=49.55  Aligned_cols=99  Identities=12%  Similarity=0.145  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHH
Q 010019          373 TVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA  451 (520)
Q Consensus       373 ~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~  451 (520)
                      .++..|+.+|.-++ .++..|..+.+..++..++.+|.. ...+.++-.++-+|..+..++|.|.+.+-+.+|+..++.+
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~-~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSP-SNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhcc-CCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            45566777887777 689999999999999999999952 4578999999999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHH
Q 010019          452 MLKFPNAQQLQRSSCFMIRNL  472 (520)
Q Consensus       452 L~~~~~~~~vqk~A~~aL~nL  472 (520)
                      ++..+.+..+.-+....|.-.
T Consensus       185 lk~~~~~~~~r~K~~EFL~fy  205 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFY  205 (257)
T ss_pred             HccccccHHHhHHHHHHHHHH
Confidence            988777777766666555544

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.31  E-value=1.2  Score=51.21  Aligned_cols=168  Identities=15%  Similarity=0.067  Sum_probs=116.9

Q ss_pred             ChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcC-CCChHHHHHHH
Q 010019          162 GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG-NEDPEILNSGF  240 (520)
Q Consensus       162 ~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~-~~~~~v~~~a~  240 (520)
                      ++=.......-|..|.+++||++....=+.++.-.-.-|-++  |...+.++++.+|...++..|... .-++|-...++
T Consensus       501 GpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv--D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaA  578 (1387)
T KOG1517|consen  501 GPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAV--DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAA  578 (1387)
T ss_pred             chhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhc--CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHH
Confidence            454556667789999999999986321112222111222222  444468899999999988888752 22346666778


Q ss_pred             HHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHH-HcCCHHHHH
Q 010019          241 AVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALV  318 (520)
Q Consensus       241 ~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~-~~g~l~~Lv  318 (520)
                      -+|+.++.......+...+.+.+...++.|+.... -+.+-.|-.|..|=.+-          +.||-.+ +.++.+.|.
T Consensus       579 FVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~----------~~Arw~G~r~~AhekL~  648 (1387)
T KOG1517|consen  579 FVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDY----------DEARWSGRRDNAHEKLI  648 (1387)
T ss_pred             HHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhc----------chhhhccccccHHHHHH
Confidence            88888887777778888899999999999998533 44455777777776543          2244455 678899999


Q ss_pred             HHHhcCCChhHHHHHHHHHHHhcc
Q 010019          319 HSLHAGLSSPSLISASIALKAVAV  342 (520)
Q Consensus       319 ~lL~~~~~~~~~~~a~~aL~~La~  342 (520)
                      .+|+.. -+++...|..||+.+..
T Consensus       649 ~~LsD~-vpEVRaAAVFALgtfl~  671 (1387)
T KOG1517|consen  649 LLLSDP-VPEVRAAAVFALGTFLS  671 (1387)
T ss_pred             HHhcCc-cHHHHHHHHHHHHHHhc
Confidence            999863 47888899999998874

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=95.28  E-value=3.2  Score=45.27  Aligned_cols=208  Identities=14%  Similarity=0.120  Sum_probs=126.7

Q ss_pred             CcHHHHHHHHHHHHHhhcccccchhHH---hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh---HHHHHhcC
Q 010019          188 GSKRVLDSCLKTMALLVHDVQSTETFR---TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV---KESYMELK  261 (520)
Q Consensus       188 ~~~~~~~~al~~La~l~~~~~~~~~i~---~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n---r~~i~~~g  261 (520)
                      +.++++-..+++++++.+-..  -.-+   -.|.+|.|..+|++  ...+++..++..++.+|...++.   |+-+   .
T Consensus       658 ~ypEvLgsil~Ai~~I~sv~~--~~~mqpPi~~ilP~ltPILrn--kh~Kv~~nti~lvg~I~~~~peyi~~rEWM---R  730 (975)
T COG5181         658 DYPEVLGSILKAICSIYSVHR--FRSMQPPISGILPSLTPILRN--KHQKVVANTIALVGTICMNSPEYIGVREWM---R  730 (975)
T ss_pred             ccHHHHHHHHHHHHHHhhhhc--ccccCCchhhccccccHhhhh--hhHHHhhhHHHHHHHHHhcCcccCCHHHHH---H
Confidence            578888888888888764221  1101   24778999999974  45789999999999998654432   2222   1


Q ss_pred             CHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010019          262 IDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA  341 (520)
Q Consensus       262 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La  341 (520)
                      +.--|++.|++++.++.++|..++..++.                .|+-...+..|++-|+.   .+-+...|.+++ ++
T Consensus       731 IcfeLvd~Lks~nKeiRR~A~~tfG~Is~----------------aiGPqdvL~~LlnnLkv---qeRq~Rvctsva-I~  790 (975)
T COG5181         731 ICFELVDSLKSWNKEIRRNATETFGCISR----------------AIGPQDVLDILLNNLKV---QERQQRVCTSVA-IS  790 (975)
T ss_pred             HHHHHHHHHHHhhHHHHHhhhhhhhhHHh----------------hcCHHHHHHHHHhcchH---HHHHhhhhhhhh-hh
Confidence            34568899999888999999999887764                33322334444444432   233444555432 11


Q ss_pred             cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC--CCchHHHHHhcCCHHHHHHHHhccCCCHHHHH
Q 010019          342 VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG--SDSNKSAIIENGGMDKLIVVSARFSDDASVLQ  419 (520)
Q Consensus       342 ~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~--~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~  419 (520)
                      .-.+.      .|-..+|=.+|+++ +.++..|+.-.+.+++-+-.  ....++-+-  -..|.|-.+|.  ..++.-+.
T Consensus       791 iVae~------cgpfsVlP~lm~dY-~TPe~nVQnGvLkam~fmFeyig~~s~dYvy--~itPlleDAlt--DrD~vhRq  859 (975)
T COG5181         791 IVAEY------CGPFSVLPTLMSDY-ETPEANVQNGVLKAMCFMFEYIGQASLDYVY--SITPLLEDALT--DRDPVHRQ  859 (975)
T ss_pred             hhHhh------cCchhhHHHHHhcc-cCchhHHHHhHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhc--ccchHHHH
Confidence            11122      24345555667765 33455677766666554431  122233332  24566777887  55777788


Q ss_pred             HHHHHHHHHhcCCH
Q 010019          420 EVMSIITVLSLRSP  433 (520)
Q Consensus       420 ~a~~aL~nLa~~~~  433 (520)
                      -|..++..|+++.+
T Consensus       860 ta~nvI~Hl~Lnc~  873 (975)
T COG5181         860 TAMNVIRHLVLNCP  873 (975)
T ss_pred             HHHHHHHHHhcCCC
Confidence            89999999988643

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.16  E-value=0.21  Score=46.53  Aligned_cols=113  Identities=17%  Similarity=0.254  Sum_probs=78.2

Q ss_pred             HHHHHHHHhcCCCh-hHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccC-----CCCcHHHHHHHHHHHHHhhC
Q 010019          314 ARALVHSLHAGLSS-PSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG-----LQGNKTVARICCSLLSKLAG  387 (520)
Q Consensus       314 l~~Lv~lL~~~~~~-~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~-----~~~~~~v~~~al~aL~~La~  387 (520)
                      ...++..+++.+.. ..+.+.-..|+.  ...+..+.+++.||+..|+++|....     ...+..+...++.+|+.|..
T Consensus        68 p~~~i~~L~~~~~~~~~L~~L~v~Lrt--~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n  145 (187)
T PF06371_consen   68 PEWYIKKLKSRPSTSKILKSLRVSLRT--NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN  145 (187)
T ss_dssp             HHHHHHHHTTT--HHHHHHHHHHHHHH--S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHccCccHHHHHHHHHHhcc--CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence            45566666655422 233333333332  23356888999999999999986532     11235788999999999998


Q ss_pred             CCchHHHHHh-cCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019          388 SDSNKSAIIE-NGGMDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (520)
Q Consensus       388 ~~~~k~~Iv~-~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~  430 (520)
                      +..+...+++ .+++..|+..|.  +.+..++..++-.|+.+|.
T Consensus       146 ~~~G~~~v~~~~~~v~~i~~~L~--s~~~~~r~~~leiL~~lc~  187 (187)
T PF06371_consen  146 TKYGLEAVLSHPDSVNLIALSLD--SPNIKTRKLALEILAALCL  187 (187)
T ss_dssp             SHHHHHHHHCSSSHHHHHHHT----TTSHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHcCcHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHC
Confidence            8888887766 567899999997  7889999999999999884

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.15  E-value=0.34  Score=47.72  Aligned_cols=102  Identities=14%  Similarity=0.171  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccc-ccchhHHhcCCcH
Q 010019          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPK  220 (520)
Q Consensus       142 d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~-~~~~~i~~~ggi~  220 (520)
                      +...+..||+.|+-+|=-  .++.|..+.+..++..|+++|+..  ..+.++..++.+|.+++-|. .+...|-+.+|+.
T Consensus       104 ~~~li~~aL~vLQGl~LL--Hp~Sr~lF~r~~~m~lll~LL~~~--~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~  179 (257)
T PF08045_consen  104 NDSLIALALRVLQGLCLL--HPPSRKLFHREQNMELLLDLLSPS--NPPAIQSACLDTLVCILLDSPENQRDFEELNGLS  179 (257)
T ss_pred             hhHHHHHHHHHHHHHHHc--CchHHHHHhhhhhHHHHHHHhccC--CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHH
Confidence            344567788999998886  899999999999999999999543  36788888999986665454 4466777889999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHh
Q 010019          221 LLVNILIDGNEDPEILNSGFAVVAASA  247 (520)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~  247 (520)
                      .+++++++.+.+.++....+..|....
T Consensus       180 ~v~~llk~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  180 TVCSLLKSKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             HHHHHHccccccHHHhHHHHHHHHHHH
Confidence            999999977655555555555544443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=94.79  E-value=0.15  Score=49.11  Aligned_cols=188  Identities=17%  Similarity=0.148  Sum_probs=94.9

Q ss_pred             CChHHHHHHHHHHHHHhcCC--hhhHHHHHhc--CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHH
Q 010019          231 EDPEILNSGFAVVAASATGN--EVVKESYMEL--KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYAR  306 (520)
Q Consensus       231 ~~~~v~~~a~~~L~~~~~~~--e~nr~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~  306 (520)
                      .+=+....++.-|..++..+  ......+.+.  ..+..++..+.+....+.+.||.++..|+..-....      +   
T Consensus        19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~------~---   89 (228)
T PF12348_consen   19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF------E---   89 (228)
T ss_dssp             SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG------H---
T ss_pred             cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH------H---
Confidence            34455556666666666554  2333333321  233444444443333788889999998885422211      1   


Q ss_pred             HHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010019          307 RFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA  386 (520)
Q Consensus       307 ~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La  386 (520)
                      .++ ...+|.|+..+.+. ...+...+-.+|..+..+-....        ..+...+..+..+.++.+...++..|..+.
T Consensus        90 ~~~-~~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~--------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l  159 (228)
T PF12348_consen   90 PYA-DILLPPLLKKLGDS-KKFIREAANNALDAIIESCSYSP--------KILLEILSQGLKSKNPQVREECAEWLAIIL  159 (228)
T ss_dssp             HHH-HHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H----------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            122 13578888888764 34566677777777764322111        122344443334456789999999988886


Q ss_pred             CCCc-hHHHHHhc----CCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Q 010019          387 GSDS-NKSAIIEN----GGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA  439 (520)
Q Consensus       387 ~~~~-~k~~Iv~~----g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i  439 (520)
                      ..-. ....+-..    ..++.+...+.  ..++.|++.|-.+++.+...-|+....+
T Consensus       160 ~~~~~~~~~l~~~~~~~~l~~~l~~~l~--D~~~~VR~~Ar~~~~~l~~~~~~~a~~~  215 (228)
T PF12348_consen  160 EKWGSDSSVLQKSAFLKQLVKALVKLLS--DADPEVREAARECLWALYSHFPERAESI  215 (228)
T ss_dssp             TT-----GGG--HHHHHHHHHHHHHHHT--SS-HHHHHHHHHHHHHHHHHH-HHH---
T ss_pred             HHccchHhhhcccchHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHCCHhhccc
Confidence            4322 11112111    24556666666  6789999999999998876555554444

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=94.77  E-value=7.8  Score=42.32  Aligned_cols=258  Identities=14%  Similarity=0.099  Sum_probs=137.3

Q ss_pred             cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHH-----HHHHHHHhcCCCC
Q 010019          219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS-----LYDAIRVLLTPDD  293 (520)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~-----a~~aL~~Ls~~dd  293 (520)
                      .+.+.++|.  .....-+..+.+.++....+  ..-..+.+.+.+..|-...+.......+.     .-.+..+|...- 
T Consensus       136 l~~l~~ll~--~~~~~~~~~aa~~~ag~v~g--~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~-  210 (569)
T KOG1242|consen  136 LELLLELLT--STKIAERAGAAYGLAGLVNG--LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPF-  210 (569)
T ss_pred             HHHHHHHhc--cccHHHHhhhhHHHHHHHcC--cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCC-
Confidence            355666665  23334444445555444322  22345556667777777776543322222     112223333211 


Q ss_pred             cchhhhhhchHHHHHHHcCCHHHHHHHHhcCCC--hhHHHHHHHHHHHhccChhhHHHHHhcCChHHHH-HHHhccCCCC
Q 010019          294 DQVVASQVYGYARRFAKIGIARALVHSLHAGLS--SPSLISASIALKAVAVNDEICKSVAENGGIDALL-RCIDDSGLQG  370 (520)
Q Consensus       294 ~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~--~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll-~lL~~~~~~~  370 (520)
                                      +-..++.+-.++.+..|  ..+...+..+...+.       ..+...||+.++ .++....+. 
T Consensus       211 ----------------EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~-------~~~~~~aVK~llpsll~~l~~~-  266 (569)
T KOG1242|consen  211 ----------------EPYIVPILPSILTNFGDKINKVREAAVEAAKAIM-------RCLSAYAVKLLLPSLLGSLLEA-  266 (569)
T ss_pred             ----------------CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHH-------HhcCcchhhHhhhhhHHHHHHH-
Confidence                            23456666666666543  344444444444432       112333443322 222211111 


Q ss_pred             cHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc--CCHHHHHHH---Hh----
Q 010019          371 NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL--RSPENAARA---ME----  441 (520)
Q Consensus       371 ~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~--~~~~~~~~i---~~----  441 (520)
                      ...-...++..|+.|+.+....-...-...+|.+.+.|.  ...+.|++.+-.+|..++.  ++++....+   ++    
T Consensus       267 kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~--DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~d  344 (569)
T KOG1242|consen  267 KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW--DTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALAD  344 (569)
T ss_pred             hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc--cCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcC
Confidence            124456888899988876555555666688999999998  6689999999999988863  344322111   10    


Q ss_pred             ----------------------cCc----HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh--ChhhHHHHHhCCHHHHHH
Q 010019          442 ----------------------AGS----GDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR--NPENRKLLLSNGVEKLIR  493 (520)
Q Consensus       442 ----------------------~G~----i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~--~~e~~~~l~~~G~~~lL~  493 (520)
                                            +-.    ++.+.+.|..  .+..+.|+++-.+-|++.-  ++.....++.. ..+-|.
T Consensus       345 p~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~e--Rst~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk  421 (569)
T KOG1242|consen  345 PSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAE--RSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLK  421 (569)
T ss_pred             cccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhh--ccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHH
Confidence                                  111    2233333322  3566779999999999863  34444444432 222233


Q ss_pred             HHHHh-CcchHHHHHHHH
Q 010019          494 QAKEN-HEICKDAATDAL  510 (520)
Q Consensus       494 ~~~~~-h~~~~~~a~aAL  510 (520)
                      ..+.. -|+++.+++.||
T Consensus       422 ~~~~d~~PEvR~vaarAL  439 (569)
T KOG1242|consen  422 ENLDDAVPEVRAVAARAL  439 (569)
T ss_pred             HHhcCCChhHHHHHHHHH
Confidence            33322 378899999888

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.58  E-value=8.1  Score=43.06  Aligned_cols=222  Identities=13%  Similarity=0.114  Sum_probs=133.1

Q ss_pred             HHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 010019          177 LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKES  256 (520)
Q Consensus       177 ~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~  256 (520)
                      -++.+|+++   -+=+...|...+--+.-.++  +++  ..+.|.|++=|.  ..++.++..|..++..++.+++.|--.
T Consensus       148 Dv~tLL~ss---kpYvRKkAIl~lykvFLkYP--eAl--r~~FprL~EkLe--DpDp~V~SAAV~VICELArKnPknyL~  218 (877)
T KOG1059|consen  148 DVFTLLNSS---KPYVRKKAILLLYKVFLKYP--EAL--RPCFPRLVEKLE--DPDPSVVSAAVSVICELARKNPQNYLQ  218 (877)
T ss_pred             HHHHHHhcC---chHHHHHHHHHHHHHHHhhh--HhH--hhhHHHHHHhcc--CCCchHHHHHHHHHHHHHhhCCccccc
Confidence            355566553   33344444444433332221  111  134677777776  468999999999999999988876433


Q ss_pred             HHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHH
Q 010019          257 YMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASI  335 (520)
Q Consensus       257 i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~  335 (520)
                           .-|.+.++|...++ =++--....+.+|+--+ +            .+++ ..+|+|.+++++.....++-++..
T Consensus       219 -----LAP~ffkllttSsNNWmLIKiiKLF~aLtplE-P------------RLgK-KLieplt~li~sT~AmSLlYECvN  279 (877)
T KOG1059|consen  219 -----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE-P------------RLGK-KLIEPITELMESTVAMSLLYECVN  279 (877)
T ss_pred             -----ccHHHHHHHhccCCCeehHHHHHHHhhccccC-c------------hhhh-hhhhHHHHHHHhhHHHHHHHHHHH
Confidence                 35788888876544 44444566667777543 3            3442 479999999987543345545544


Q ss_pred             HHH--HhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccC
Q 010019          336 ALK--AVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFS  412 (520)
Q Consensus       336 aL~--~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~  412 (520)
                      ++-  +++..-.++..-     +...++-|+...++.++.+.--+|-+++.++ .++...++     --+.++++|.  .
T Consensus       280 TVVa~s~s~g~~d~~as-----iqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~--D  347 (877)
T KOG1059|consen  280 TVVAVSMSSGMSDHSAS-----IQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLD--D  347 (877)
T ss_pred             HheeehhccCCCCcHHH-----HHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhc--c
Confidence            432  333211111111     2233333443333344578888888888887 34432222     2457888898  6


Q ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 010019          413 DDASVLQEVMSIITVLSLRSPENAARAM  440 (520)
Q Consensus       413 ~~~~v~~~a~~aL~nLa~~~~~~~~~i~  440 (520)
                      .+++|+-.|+-.|..+.  +.+|..+|+
T Consensus       348 kD~SIRlrALdLl~gmV--skkNl~eIV  373 (877)
T KOG1059|consen  348 KDESIRLRALDLLYGMV--SKKNLMEIV  373 (877)
T ss_pred             CCchhHHHHHHHHHHHh--hhhhHHHHH
Confidence            78999999999999888  456666654

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=94.55  E-value=0.38  Score=46.37  Aligned_cols=158  Identities=15%  Similarity=0.139  Sum_probs=83.5

Q ss_pred             CHHHHHHHHhcCCChhHHHHHHHHHHHhccChhh-HHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCch
Q 010019          313 IARALVHSLHAGLSSPSLISASIALKAVAVNDEI-CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSN  391 (520)
Q Consensus       313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~-~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~  391 (520)
                      .+..+...+.+- ...+...||.++..|+..-.. ....++ ..++.|+..+.+.    +..+...|-.+|..+..+-..
T Consensus        54 ~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~l~~Ll~~~~~~----~~~i~~~a~~~L~~i~~~~~~  127 (228)
T PF12348_consen   54 LLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-ILLPPLLKKLGDS----KKFIREAANNALDAIIESCSY  127 (228)
T ss_dssp             --HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHGGG-------HHHHHHHHHHHHHHHTTS-H
T ss_pred             hHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHccc----cHHHHHHHHHHHHHHHHHCCc
Confidence            445555555432 245788999999999842211 222221 2345566655542    357888899999888865431


Q ss_pred             HHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhc----CcHHHHHHHHHhCCCCHHHHHHHHH
Q 010019          392 KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA----GSGDLAIQAMLKFPNAQQLQRSSCF  467 (520)
Q Consensus       392 k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~----G~i~~lv~~L~~~~~~~~vqk~A~~  467 (520)
                      ...+.    ++.+...+.  +.++.++..++..|..+....+.....+-..    ...+.+...+..  .++.|.+.|-.
T Consensus       128 ~~~~~----~~~l~~~~~--~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D--~~~~VR~~Ar~  199 (228)
T PF12348_consen  128 SPKIL----LEILSQGLK--SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSD--ADPEVREAARE  199 (228)
T ss_dssp             --HHH----HHHHHHHTT---S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTS--S-HHHHHHHHH
T ss_pred             HHHHH----HHHHHHHHh--CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCC--CCHHHHHHHHH
Confidence            12221    334444555  6789999999999998876555222222211    245556666644  68899999988


Q ss_pred             HHHHHhhhChhhHHHHH
Q 010019          468 MIRNLVARNPENRKLLL  484 (520)
Q Consensus       468 aL~nL~~~~~e~~~~l~  484 (520)
                      ++..+....|+....++
T Consensus       200 ~~~~l~~~~~~~a~~~~  216 (228)
T PF12348_consen  200 CLWALYSHFPERAESIL  216 (228)
T ss_dssp             HHHHHHHHH-HHH----
T ss_pred             HHHHHHHHCCHhhccch
Confidence            88888665566555544

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.43  E-value=10  Score=42.21  Aligned_cols=299  Identities=11%  Similarity=0.101  Sum_probs=158.8

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      .+..++.-+.|       .|+--+.=||.-+.+.-+    .+.+..+  +.-||   ++|.+++..+---+..||.-|.-
T Consensus       112 vin~iknDL~s-------rn~~fv~LAL~~I~niG~----re~~ea~--~~DI~---KlLvS~~~~~~vkqkaALclL~L  175 (938)
T KOG1077|consen  112 VINSIKNDLSS-------RNPTFVCLALHCIANIGS----REMAEAF--ADDIP---KLLVSGSSMDYVKQKAALCLLRL  175 (938)
T ss_pred             HHHHHHhhhhc-------CCcHHHHHHHHHHHhhcc----HhHHHHh--hhhhH---HHHhCCcchHHHHHHHHHHHHHH
Confidence            34455555555       444445555555544332    2222222  12233   55666532221124455555554


Q ss_pred             hhcccccchhHHhcCC-cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh-hHHHHHhcCCHHHHHHHHhcCCh-----
Q 010019          203 LVHDVQSTETFRTGGG-PKLLVNILIDGNEDPEILNSGFAVVAASATGNEV-VKESYMELKIDELILEILSRQRN-----  275 (520)
Q Consensus       203 l~~~~~~~~~i~~~gg-i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~-nr~~i~~~g~i~~Lv~lL~~~~~-----  275 (520)
                      .- .   .++++..|+ .+.++.+|...  +-.+...+...+..++..+++ .+..+-.  ++..|..+....+.     
T Consensus       176 ~r-~---spDl~~~~~W~~riv~LL~D~--~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--avs~L~riv~~~~t~~qdY  247 (938)
T KOG1077|consen  176 FR-K---SPDLVNPGEWAQRIVHLLDDQ--HMGVVTAATSLIEALVKKNPESYKTCLPL--AVSRLSRIVVVVGTSLQDY  247 (938)
T ss_pred             Hh-c---CccccChhhHHHHHHHHhCcc--ccceeeehHHHHHHHHHcCCHHHhhhHHH--HHHHHHHHHhhcccchhhc
Confidence            32 2   366666544 77888888643  234444555566566655443 2322211  23333333332221     


Q ss_pred             --------HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCC-hhHH----HH-HHHHHHHhc
Q 010019          276 --------DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS-SPSL----IS-ASIALKAVA  341 (520)
Q Consensus       276 --------~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~-~~~~----~~-a~~aL~~La  341 (520)
                              =++..++++|.++-..+|+.+       .+ .+.  ..++.++...+..+. ..++    ++ ++.-.-+|+
T Consensus       248 Tyy~vP~PWL~vKl~rlLq~~p~~~D~~~-------r~-~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~  317 (938)
T KOG1077|consen  248 TYYFVPAPWLQVKLLRLLQIYPTPEDPST-------RA-RLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLA  317 (938)
T ss_pred             eeecCCChHHHHHHHHHHHhCCCCCCchH-------HH-HHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHH
Confidence                    234457778877766665533       11 222  245555555553321 1121    12 222222444


Q ss_pred             -cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHH
Q 010019          342 -VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQE  420 (520)
Q Consensus       342 -~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~  420 (520)
                       .-|+....+.++  +..|-.+|+.. +.   .+.--++..+..|+++....+++-..  .+.++..|+.. .+.++++.
T Consensus       318 ~h~D~e~~ll~~~--~~~Lg~fls~r-E~---NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkte-rDvSirrr  388 (938)
T KOG1077|consen  318 IHLDSEPELLSRA--VNQLGQFLSHR-ET---NIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTE-RDVSIRRR  388 (938)
T ss_pred             HHcCCcHHHHHHH--HHHHHHHhhcc-cc---cchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccc-cchHHHHH
Confidence             334444444442  56667777652 32   57788888899998886666666654  88999999854 47899999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019          421 VMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV  473 (520)
Q Consensus       421 a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~  473 (520)
                      ++-.|..+|  +.+|++.|++.     +++-|.+  .+..++++-..=++-|+
T Consensus       389 avDLLY~mc--D~~Nak~IV~e-----lLqYL~t--Ad~sireeivlKvAILa  432 (938)
T KOG1077|consen  389 AVDLLYAMC--DVSNAKQIVAE-----LLQYLET--ADYSIREEIVLKVAILA  432 (938)
T ss_pred             HHHHHHHHh--chhhHHHHHHH-----HHHHHhh--cchHHHHHHHHHHHHHH
Confidence            999999999  45888888642     4444433  45666655554444443

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.37  E-value=3.7  Score=40.45  Aligned_cols=206  Identities=13%  Similarity=0.013  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHH-HhcCcHHHHHH-HHhhcc--------cCcHHHHHHHHHHHHHhhcccccchh
Q 010019          143 LNEMMGLFDKLIELCGGNEGSVNAAVA-TKNGGVELVCS-ICYKMR--------CGSKRVLDSCLKTMALLVHDVQSTET  212 (520)
Q Consensus       143 ~~~~~~al~~L~~l~~~~~~~~~r~~i-~~~Gaip~Lv~-lL~~~~--------~~~~~~~~~al~~La~l~~~~~~~~~  212 (520)
                      ++.-..|+.+|.+--..  .+.---.+ -..|.+..|++ +.+-..        ...+...++||.-+..++...+.|..
T Consensus         9 ~~~Re~Al~eLsk~r~~--~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~   86 (262)
T PF04078_consen    9 PETRENALLELSKKRES--FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP   86 (262)
T ss_dssp             HHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred             cchHHHHHHHHHHhhhc--ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence            34444566665553322  12211122 23577776654 333221        01234478888888888777677899


Q ss_pred             HHhcCCcHHHHHHHhcCCCC---hHHHHHHHHHHHHHhcC-ChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHh
Q 010019          213 FRTGGGPKLLVNILIDGNED---PEILNSGFAVVAASATG-NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVL  288 (520)
Q Consensus       213 i~~~ggi~~Lv~lL~~~~~~---~~v~~~a~~~L~~~~~~-~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L  288 (520)
                      |+++..+-.|..+|+..+..   +.+.-..+.+++.+... +.+.-..+....++|..++.|..+++-..--|.-.+..+
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            99999887788888755443   34556678888887653 233345566889999999999987543333355556666


Q ss_pred             cCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHh
Q 010019          289 LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE  352 (520)
Q Consensus       289 s~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~  352 (520)
                      -.+|+.-.-+.+..++--.+.  ..+..++.-|...+++.+++.....-..|+.++..+..+..
T Consensus       167 L~dd~GL~yiC~t~eRf~av~--~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~  228 (262)
T PF04078_consen  167 LLDDVGLNYICQTAERFFAVA--MVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ  228 (262)
T ss_dssp             HHSHHHHHHHTSSHHHHHHHH--HHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred             HcchhHHHHHhcCHHHHHHHH--HHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence            655543221222222222222  35666666666656677889999999999988887776653

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=94.11  E-value=3.8  Score=41.89  Aligned_cols=189  Identities=19%  Similarity=0.201  Sum_probs=112.5

Q ss_pred             CcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchh
Q 010019          218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV  297 (520)
Q Consensus       218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~  297 (520)
                      .++.+++++.+.  +..+...+.+.++..-           ..-+++.|..+|......++..|..+|..+=.       
T Consensus        44 ~~~~~~~~l~~~--~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------  103 (335)
T COG1413          44 AADELLKLLEDE--DLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELGD-------  103 (335)
T ss_pred             hHHHHHHHHcCC--CHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-------
Confidence            456677777643  4555555555543321           12357888888887766677777776664321       


Q ss_pred             hhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCC--------
Q 010019          298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQ--------  369 (520)
Q Consensus       298 ~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~--------  369 (520)
                                   ...+++|+.++....+..+...+.++|..+-.  +        .++..++.++.+....        
T Consensus       104 -------------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~--~--------~a~~~l~~~l~~~~~~~a~~~~~~  160 (335)
T COG1413         104 -------------PEAVPPLVELLENDENEGVRAAAARALGKLGD--E--------RALDPLLEALQDEDSGSAAAALDA  160 (335)
T ss_pred             -------------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc--h--------hhhHHHHHHhccchhhhhhhhccc
Confidence                         23589999999864566788888888888742  1        1267888888763210        


Q ss_pred             CcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHH
Q 010019          370 GNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAI  449 (520)
Q Consensus       370 ~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv  449 (520)
                      ....+...+...|..          +.+.-.++.+...+.  .....|+..+..+|..+...+         ....+.+.
T Consensus       161 ~~~~~r~~a~~~l~~----------~~~~~~~~~l~~~l~--~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~  219 (335)
T COG1413         161 ALLDVRAAAAEALGE----------LGDPEAIPLLIELLE--DEDADVRRAAASALGQLGSEN---------VEAADLLV  219 (335)
T ss_pred             hHHHHHHHHHHHHHH----------cCChhhhHHHHHHHh--CchHHHHHHHHHHHHHhhcch---------hhHHHHHH
Confidence            000112222222211          222345778888887  556789999999999887643         12345555


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHH
Q 010019          450 QAMLKFPNAQQLQRSSCFMIRNL  472 (520)
Q Consensus       450 ~~L~~~~~~~~vqk~A~~aL~nL  472 (520)
                      ..+..  .+..+...++.++..+
T Consensus       220 ~~~~~--~~~~vr~~~~~~l~~~  240 (335)
T COG1413         220 KALSD--ESLEVRKAALLALGEI  240 (335)
T ss_pred             HHhcC--CCHHHHHHHHHHhccc
Confidence            55532  4566666666665554

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.04  E-value=4  Score=45.79  Aligned_cols=290  Identities=15%  Similarity=0.070  Sum_probs=161.4

Q ss_pred             HHHHHhhcCCChhHHHHHHHHH--HhhcCcc-cCCccccCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCChhhHHHHHHH
Q 010019           73 VKENMEDLGMEPTEALQDAIQT--LSLQGVD-LSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGL  149 (520)
Q Consensus        73 V~eni~~~~m~p~eal~~aI~q--f~~qgvd-ls~i~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~d~~~~~~a  149 (520)
                      -..|+.+++..+.|..++.++-  |..|-+. ++.         ...+.++...++.+......       ...+.+.+.
T Consensus       417 ~l~s~a~~~~~~sE~~qel~~la~~a~qev~~~~~---------~n~~~v~~~r~rk~~~~~~~-------~~~~svakt  480 (748)
T KOG4151|consen  417 KLYSEAMEEEVTSEKAQELFDLAAFAFQEVAALSP---------LNWGNVHMSRARKRLSLDED-------PSCESVAKT  480 (748)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhccc---------cccchHHHHHHHHhhccCcc-------hhhhHHHHH
Confidence            3456777777777777777765  6666652 111         01123344445554443222       222222222


Q ss_pred             HH----HHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH-hh-cccccchhHHhcCCcHHHH
Q 010019          150 FD----KLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL-LV-HDVQSTETFRTGGGPKLLV  223 (520)
Q Consensus       150 l~----~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~-l~-~~~~~~~~i~~~ggi~~Lv  223 (520)
                      ..    ++-. |+   ...-|...++.|++..|+++..-.   .+......-.+|++ +. .++.      -...++++.
T Consensus       481 ~~~~~~E~~a-A~---~K~~~~~~Ik~~~~~aLlrl~~~q---~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~  547 (748)
T KOG4151|consen  481 VSWAKNEYLA-AK---EKYERAKKIKPGGYEALLRLGQQQ---FEEAKLKWYHALAGKIDFPGER------SYEVVKPLD  547 (748)
T ss_pred             HHHHHHHHHh-hh---hHHhcCccccccHHHHHHHHHHHh---chHHHHHHHHHHhhhcCCCCCc------hhhhhhhhc
Confidence            22    2222 33   445577788999999999998754   23333334455552 11 1111      112234444


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhch
Q 010019          224 NILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYG  303 (520)
Q Consensus       224 ~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~  303 (520)
                      ..+.... ...---..+.++.|+++.++..|+.+.+.-+++.+=+.+-......++.+...+.||......         
T Consensus       548 s~~~~d~-~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~---------  617 (748)
T KOG4151|consen  548 SALHNDE-KGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLL---------  617 (748)
T ss_pred             chhhhhH-HHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHH---------
Confidence            4443211 111113568889999998999999988877777655555443446777788899999875432         


Q ss_pred             HHHHHHH-cCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhh-HH-HHHhcCChHHHHHHHhccCCCCcHHHHHHHHH
Q 010019          304 YARRFAK-IGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI-CK-SVAENGGIDALLRCIDDSGLQGNKTVARICCS  380 (520)
Q Consensus       304 ~a~~i~~-~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~-~~-~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~  380 (520)
                      +.+.+++ ..+++.....+.. .+...-..+++++..++...++ |. ...-..+...++.++.+.    +.++++..+.
T Consensus       618 ~e~si~e~~~~l~~w~~~~e~-~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~----~~~~qhrgl~  692 (748)
T KOG4151|consen  618 YERSIVEYKDRLKLWNLNLEV-ADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE----DDEIQHRGLV  692 (748)
T ss_pred             HHHHhhccccCchHHHHHHHh-hhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc----hhhhhhhhhh
Confidence            3456665 4667777666654 3333444566667766654444 44 233345667777777753    3478999988


Q ss_pred             HHHHhhCC-CchHHHHHhcCCHHHHHH
Q 010019          381 LLSKLAGS-DSNKSAIIENGGMDKLIV  406 (520)
Q Consensus       381 aL~~La~~-~~~k~~Iv~~g~l~~Lv~  406 (520)
                      .+.|+.+. .+....++....++.+..
T Consensus       693 ~~ln~~~~~~ei~~~~~~~~~~~~l~~  719 (748)
T KOG4151|consen  693 IILNLFEALFEIAEKIFETEVMELLSG  719 (748)
T ss_pred             hhhhHHHHHHHHHHHhccchHHHHHHH
Confidence            88886633 333444544444444333

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=93.86  E-value=0.95  Score=47.49  Aligned_cols=85  Identities=11%  Similarity=0.085  Sum_probs=62.4

Q ss_pred             hHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHh-hcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcH
Q 010019          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICY-KMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPK  220 (520)
Q Consensus       142 d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~-~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~  220 (520)
                      .......++..+...-..  +|..-..+.++|.++.+++.+. ..-....+++...-.++.++|=.+.+.+.+.+.+.++
T Consensus       122 G~~v~s~a~~ivs~~I~n--ePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~  199 (379)
T PF06025_consen  122 GPSVFSLAINIVSDFIHN--EPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLD  199 (379)
T ss_pred             chHHHHHHHHHHHHHHhc--CCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHH
Confidence            345555666666666665  7888888999999999999887 4434566777666666777665555578888889999


Q ss_pred             HHHHHHhc
Q 010019          221 LLVNILID  228 (520)
Q Consensus       221 ~Lv~lL~~  228 (520)
                      .+++++.+
T Consensus       200 ~~f~if~s  207 (379)
T PF06025_consen  200 KLFEIFTS  207 (379)
T ss_pred             HHHHHhCC
Confidence            99998754

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.84  E-value=3.6  Score=44.49  Aligned_cols=217  Identities=17%  Similarity=0.109  Sum_probs=119.6

Q ss_pred             cHHHHHHHHHHHHHhhcccccchhHHh-cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHH
Q 010019          189 SKRVLDSCLKTMALLVHDVQSTETFRT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELIL  267 (520)
Q Consensus       189 ~~~~~~~al~~La~l~~~~~~~~~i~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv  267 (520)
                      ..+++.-+-+.+...+.+-.+.+..++ ...++.++.-+.  +.++++|..|+.|+........ .--...-.|++..++
T Consensus       221 s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~--ss~~~iq~~al~Wi~efV~i~g-~~~l~~~s~il~~iL  297 (675)
T KOG0212|consen  221 SDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQ--SSEPEIQLKALTWIQEFVKIPG-RDLLLYLSGILTAIL  297 (675)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcccccc--CCcHHHHHHHHHHHHHHhcCCC-cchhhhhhhhhhhcc
Confidence            456655555556565544444455543 345666666664  5679999999999988765433 222333456667777


Q ss_pred             HHHhcCCh----HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHc-CCHHHHHHHHhcCCChhHHHHHHHHHHHhcc
Q 010019          268 EILSRQRN----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-GIARALVHSLHAGLSSPSLISASIALKAVAV  342 (520)
Q Consensus       268 ~lL~~~~~----~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~-g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~  342 (520)
                      ..+.....    +.-+..-..|..++.......          . ... ..++.|...+.... .+....+..-+..|-.
T Consensus       298 pc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~----------~-id~~~ii~vl~~~l~~~~-~~tri~~L~Wi~~l~~  365 (675)
T KOG0212|consen  298 PCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKE----------E-IDYGSIIEVLTKYLSDDR-EETRIAVLNWIILLYH  365 (675)
T ss_pred             cCCCCCccccHHHHHHHHHHHHHHHHhhhhhcc----------c-cchHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHh
Confidence            77665432    122222223444443221110          0 111 13455555554322 3344444433333332


Q ss_pred             ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHH-HHHHH
Q 010019          343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDAS-VLQEV  421 (520)
Q Consensus       343 ~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~-v~~~a  421 (520)
                      +.-+.-........+.|+.-|++.+    .+|+..++.+|++++.++...      +-.+.+..+|+.|..++. +...+
T Consensus       366 ~~p~ql~~h~~~if~tLL~tLsd~s----d~vvl~~L~lla~i~~s~~~~------~~~~fl~sLL~~f~e~~~~l~~Rg  435 (675)
T KOG0212|consen  366 KAPGQLLVHNDSIFLTLLKTLSDRS----DEVVLLALSLLASICSSSNSP------NLRKFLLSLLEMFKEDTKLLEVRG  435 (675)
T ss_pred             hCcchhhhhccHHHHHHHHhhcCch----hHHHHHHHHHHHHHhcCcccc------cHHHHHHHHHHHHhhhhHHHHhhh
Confidence            2222222333344566777777643    379999999999999776544      447778888887776554 44457


Q ss_pred             HHHHHHHhc
Q 010019          422 MSIITVLSL  430 (520)
Q Consensus       422 ~~aL~nLa~  430 (520)
                      --.++.||.
T Consensus       436 ~lIIRqlC~  444 (675)
T KOG0212|consen  436 NLIIRQLCL  444 (675)
T ss_pred             hHHHHHHHH
Confidence            777788875

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=93.78  E-value=3.2  Score=43.25  Aligned_cols=135  Identities=16%  Similarity=0.223  Sum_probs=79.6

Q ss_pred             hhHHHHHhcCChHHHHHHHhc----cC-----CC---CcHHHHHHHHHHHHHhh-CCCchHHHHHhcC--CHHHHHH-HH
Q 010019          345 EICKSVAENGGIDALLRCIDD----SG-----LQ---GNKTVARICCSLLSKLA-GSDSNKSAIIENG--GMDKLIV-VS  408 (520)
Q Consensus       345 e~~~~i~~~Ggv~~Ll~lL~~----~~-----~~---~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g--~l~~Lv~-lL  408 (520)
                      -++..+.+.||++.+++++.+    ..     +.   .+......|+.+|-+.+ .+++|...+....  .++.+.. ++
T Consensus       197 ~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~  276 (361)
T PF07814_consen  197 WFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLL  276 (361)
T ss_pred             cchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHH
Confidence            357778888999999999862    10     01   11235566888888876 5677887776542  2333333 33


Q ss_pred             hcc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHH---HHHHHHHhC---------CCCHHHHHHHHHHHHHHhhh
Q 010019          409 ARF-SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGD---LAIQAMLKF---------PNAQQLQRSSCFMIRNLVAR  475 (520)
Q Consensus       409 ~~~-~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~---~lv~~L~~~---------~~~~~vqk~A~~aL~nL~~~  475 (520)
                      ... .....+...++..|.||+-++|+.+..+...+...   .+...+..-         .......--+..++-||+.+
T Consensus       277 ~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~  356 (361)
T PF07814_consen  277 RQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEH  356 (361)
T ss_pred             HHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccccccccchHHHHHHHhHHHheee
Confidence            321 12234467889999999999988888876654322   222221110         12233444566677777766


Q ss_pred             Chhh
Q 010019          476 NPEN  479 (520)
Q Consensus       476 ~~e~  479 (520)
                      ++.+
T Consensus       357 s~~n  360 (361)
T PF07814_consen  357 SEAN  360 (361)
T ss_pred             CccC
Confidence            5544

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.70  E-value=2.3  Score=41.38  Aligned_cols=151  Identities=14%  Similarity=0.219  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCC----hHHHH-HHHHHHHHhcCCCCcchhhhhhchHHHHHHHc
Q 010019          237 NSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR----NDSIQ-SLYDAIRVLLTPDDDQVVASQVYGYARRFAKI  311 (520)
Q Consensus       237 ~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~----~~~~~-~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~  311 (520)
                      +.++..+...++ |++.|..|.++..--.|-..|...+    .+.++ .+.++|..|...||.-|        -+.+...
T Consensus        97 cnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eV--------i~fLl~T  167 (293)
T KOG3036|consen   97 CNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEV--------IRFLLTT  167 (293)
T ss_pred             HHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHH--------HHHHHHh
Confidence            455566655554 7889999999988777777776542    15554 58899999998887544        3456678


Q ss_pred             CCHHHHHHHHhcCCChhHHHHHHHHHHHhccChh----hHHHHHhcCChHHHHHHH-hccCCCCcHHHHHHHHHHHHHhh
Q 010019          312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDE----ICKSVAENGGIDALLRCI-DDSGLQGNKTVARICCSLLSKLA  386 (520)
Q Consensus       312 g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e----~~~~i~~~Ggv~~Ll~lL-~~~~~~~~~~v~~~al~aL~~La  386 (520)
                      +.+|..+..|..|+. ..+.-|...+..+..+|.    .|+..-+--.|..++.-| ..-.+.++..+.+.+.++.-+|+
T Consensus       168 eIVPlCLrime~GSe-lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs  246 (293)
T KOG3036|consen  168 EIVPLCLRIMESGSE-LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS  246 (293)
T ss_pred             hhHHHHHHHHhcccH-HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            999999999998863 233344444555544443    344333333333322222 11112234578889999998888


Q ss_pred             CCCchHHHHHh
Q 010019          387 GSDSNKSAIIE  397 (520)
Q Consensus       387 ~~~~~k~~Iv~  397 (520)
                      .++..|.++..
T Consensus       247 dnprar~aL~~  257 (293)
T KOG3036|consen  247 DNPRARAALRS  257 (293)
T ss_pred             CCHHHHHHHHh
Confidence            88877776653

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=93.62  E-value=8.9  Score=43.77  Aligned_cols=238  Identities=13%  Similarity=0.072  Sum_probs=140.9

Q ss_pred             CCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcchhhhhhchHHHH
Q 010019          229 GNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARR  307 (520)
Q Consensus       229 ~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~  307 (520)
                      +++.+.+...+++++...+.....+.+.+-  -.....+..+.-+.. .+...|++++..-|.   .++           
T Consensus       460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~---~~v-----------  523 (1005)
T KOG2274|consen  460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK---VKV-----------  523 (1005)
T ss_pred             cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC---cee-----------
Confidence            345666666778888765433223333221  122334444443322 444557777766662   222           


Q ss_pred             HH--HcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 010019          308 FA--KIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (520)
Q Consensus       308 i~--~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~  384 (520)
                      +.  ..+.+..|+++...+. .+++.-..-+|+..+ .+++.- .-.+....|..+.+...+++++  -+...+--++..
T Consensus       524 l~~~~p~ild~L~qlas~~s-~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP--~V~~~~qd~f~e  599 (1005)
T KOG2274|consen  524 LLSLQPMILDGLLQLASKSS-DEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDP--QVASLAQDLFEE  599 (1005)
T ss_pred             ccccchHHHHHHHHHccccc-HHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCc--hHHHHHHHHHHH
Confidence            22  2356777877776543 567777777888777 455543 4456667788888887776553  666666666666


Q ss_pred             hhCCCchHHHHHhcCCHHHHHHHHhccCC--CHHHHHHHHHHHHHHhcCCHH-HHHHHHhcCcHHHHHHHHHhCCCCHHH
Q 010019          385 LAGSDSNKSAIIENGGMDKLIVVSARFSD--DASVLQEVMSIITVLSLRSPE-NAARAMEAGSGDLAIQAMLKFPNAQQL  461 (520)
Q Consensus       385 La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~--~~~v~~~a~~aL~nLa~~~~~-~~~~i~~~G~i~~lv~~L~~~~~~~~v  461 (520)
                      |....+|...+.+ -.+|.+++.|.....  .+..+.-+.-.|..+....|. .-+.++ +-+.+++.+.. -|+++..+
T Consensus       600 l~q~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~t-lHsdD~~t  676 (1005)
T KOG2274|consen  600 LLQIAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKIT-LHSDDHET  676 (1005)
T ss_pred             HHHHHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhhe-eecCChHH
Confidence            6643333333333 368999999983221  144455555555544433222 222222 23467777766 69999998


Q ss_pred             HHHHHHHHHHHhhhChhhHHHHHhCCHH
Q 010019          462 QRSSCFMIRNLVARNPENRKLLLSNGVE  489 (520)
Q Consensus       462 qk~A~~aL~nL~~~~~e~~~~l~~~G~~  489 (520)
                      -.+|--++|.+.+.+.++....-..+..
T Consensus       677 lQ~~~EcLra~Is~~~eq~~t~~~e~g~  704 (1005)
T KOG2274|consen  677 LQNATECLRALISVTLEQLLTWHDEPGH  704 (1005)
T ss_pred             HHhHHHHHHHHHhcCHHHHHhhccCCCc
Confidence            8899999999988878877666655433

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=93.49  E-value=14  Score=42.61  Aligned_cols=189  Identities=16%  Similarity=0.180  Sum_probs=107.4

Q ss_pred             CHHHHHHHHhcCCChhHHHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh---C
Q 010019          313 IARALVHSLHAGLSSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA---G  387 (520)
Q Consensus       313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La---~  387 (520)
                      .+..++.-|.+. -..+.+.++.+|+.|+.  +.+.-..     .+..|++=|....   +....+.-..+|+.++   |
T Consensus       175 il~~l~~ql~s~-R~aVrKkai~~l~~la~~~~~~ly~~-----li~~Ll~~L~~~~---q~~~~rt~Iq~l~~i~r~ag  245 (1233)
T KOG1824|consen  175 ILKCLLPQLQSP-RLAVRKKAITALGHLASSCNRDLYVE-----LIEHLLKGLSNRT---QMSATRTYIQCLAAICRQAG  245 (1233)
T ss_pred             HHHHHhhcccCh-HHHHHHHHHHHHHHHHHhcCHHHHHH-----HHHHHHhccCCCC---chHHHHHHHHHHHHHHHHhc
Confidence            344444444432 24677899999999983  3332222     2344444444322   2234444444555444   3


Q ss_pred             CCchHHHHHhcCCHHHHHHHHhcc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCC----------
Q 010019          388 SDSNKSAIIENGGMDKLIVVSARF-SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFP----------  456 (520)
Q Consensus       388 ~~~~k~~Iv~~g~l~~Lv~lL~~~-~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~----------  456 (520)
                      +.-. ..+  ...+|.+.+..+.- .++.+++|.++.++-.+-.|+|.+.-....+ .+..+++.+.-.|          
T Consensus       246 ~r~~-~h~--~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pe-i~~l~l~yisYDPNy~yd~~eDe  321 (1233)
T KOG1824|consen  246 HRFG-SHL--DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPE-IINLCLSYISYDPNYNYDTEEDE  321 (1233)
T ss_pred             chhh-ccc--chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchH-HHHHHHHHhccCCCCCCCCccch
Confidence            2111 111  12466777766321 4578899999999998888888765433211 2223333321111          


Q ss_pred             ------------------C----CHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcch-HHH---HHHHH
Q 010019          457 ------------------N----AQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEIC-KDA---ATDAL  510 (520)
Q Consensus       457 ------------------~----~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~-~~~---a~aAL  510 (520)
                                        +    .++|.|.|+-+|..+.+-..|....+.+.=...+|.+.+.+-... -|+   =.++|
T Consensus       322 d~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll  401 (1233)
T KOG1824|consen  322 DAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALL  401 (1233)
T ss_pred             hhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence                              1    267999999999888776688888888887778888887776543 232   24555


Q ss_pred             HHcC
Q 010019          511 RDLG  514 (520)
Q Consensus       511 r~Lg  514 (520)
                      +.-+
T Consensus       402 ~qt~  405 (1233)
T KOG1824|consen  402 KQTR  405 (1233)
T ss_pred             HcCC
Confidence            5443

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.42  E-value=6.2  Score=44.18  Aligned_cols=102  Identities=11%  Similarity=0.130  Sum_probs=61.4

Q ss_pred             hHHHHHHHHHHHHHHhcCCCChhhHHHHHhc---Cc--------HHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccc
Q 010019          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKN---GG--------VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST  210 (520)
Q Consensus       142 d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~---Ga--------ip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~  210 (520)
                      .++....|...+.+=|+. +++.-|.++.+.   ..        +.+|.+.++.   +++-+...+.-.++.+-+.+  .
T Consensus        80 ~P~~a~~avnt~~kD~~d-~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d---~~~yvRktaa~~vakl~~~~--~  153 (734)
T KOG1061|consen   80 KPDLAILAVNTFLKDCED-PNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKD---DDPYVRKTAAVCVAKLFDID--P  153 (734)
T ss_pred             CchHHHhhhhhhhccCCC-CCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccC---CChhHHHHHHHHHHHhhcCC--h
Confidence            355555566666665654 456666665552   11        2233444433   45555555555555554333  3


Q ss_pred             hhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 010019          211 ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE  251 (520)
Q Consensus       211 ~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e  251 (520)
                      ..+...|-++.|-.++.  .+++.+...|+.+|..+...+.
T Consensus       154 ~~~~~~gl~~~L~~ll~--D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  154 DLVEDSGLVDALKDLLS--DSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             hhccccchhHHHHHHhc--CCCchHHHHHHHHHHHHHHhCC
Confidence            45556677888888886  5678999999999988875554

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.42  E-value=17  Score=41.14  Aligned_cols=342  Identities=13%  Similarity=0.134  Sum_probs=179.1

Q ss_pred             ceecccccCCCCCcchhhhhhHHHHHHHHHHHHhhcCCChhHHHHHHHHH-H-hhcCcccC--Cc-----cccCCCCCC-
Q 010019           45 FVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQT-L-SLQGVDLS--GI-----VKCVPGESS-  114 (520)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~isQetfDe~V~eni~~~~m~p~eal~~aI~q-f-~~qgvdls--~i-----~~~~~~~~~-  114 (520)
                      +|| +++|-+-.+- -.+.|.+|-  +.+|.++-+=.-++..--|..+.- | ..-|.+=+  .|     +.+..-..+ 
T Consensus        13 lIr-~IraakT~AE-Er~vI~kE~--a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypahFGqieclKLias~~f~dKR   88 (866)
T KOG1062|consen   13 LIR-AIRAAKTAAE-ERAVIQKEC--AAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIASDNFLDKR   88 (866)
T ss_pred             HHH-HHHHhhhhHH-HHHHHHHHH--HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcCCCchHHH
Confidence            355 5555432111 224455553  445666666555555555555555 2 66777632  22     111100000 


Q ss_pred             ----------CCCCcHHH-HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHh
Q 010019          115 ----------LKDNPLIQ-SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICY  183 (520)
Q Consensus       115 ----------~~~~~~~~-~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~  183 (520)
                                +.+|.+.. ....|+.-|.+       +++=.+.-||-.|..+|+.   +-.|+      ..|-+.++|+
T Consensus        89 iGYLaamLlLdE~qdvllLltNslknDL~s-------~nq~vVglAL~alg~i~s~---Emard------lapeVe~Ll~  152 (866)
T KOG1062|consen   89 IGYLAAMLLLDERQDLLLLLTNSLKNDLNS-------SNQYVVGLALCALGNICSP---EMARD------LAPEVERLLQ  152 (866)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhhccC-------CCeeehHHHHHHhhccCCH---HHhHH------hhHHHHHHHh
Confidence                      12244433 23456666666       6666778899999998873   22233      4577778888


Q ss_pred             hcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCH
Q 010019          184 KMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKID  263 (520)
Q Consensus       184 ~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i  263 (520)
                      ..   ++-+..+|+-...-+....+   +++ +.-++..-++|..  .+..+...++..+..+|..+++.-..|.+  .+
T Consensus       153 ~~---~~~irKKA~Lca~r~irK~P---~l~-e~f~~~~~~lL~e--k~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~  221 (866)
T KOG1062|consen  153 HR---DPYIRKKAALCAVRFIRKVP---DLV-EHFVIAFRKLLCE--KHHGVLIAGLHLITELCKISPDALSYFRD--LV  221 (866)
T ss_pred             CC---CHHHHHHHHHHHHHHHHcCc---hHH-HHhhHHHHHHHhh--cCCceeeeHHHHHHHHHhcCHHHHHHHHH--HH
Confidence            74   66666555544444433321   221 1123444445542  34566677788888888887777666665  77


Q ss_pred             HHHHHHHhcC--------------ChH-HHHHHHHHHHHhcCCCCcchhh-----hhhch---HHHHHHHcCCHHHHHHH
Q 010019          264 ELILEILSRQ--------------RND-SIQSLYDAIRVLLTPDDDQVVA-----SQVYG---YARRFAKIGIARALVHS  320 (520)
Q Consensus       264 ~~Lv~lL~~~--------------~~~-~~~~a~~aL~~Ls~~dd~~v~~-----~~a~~---~a~~i~~~g~l~~Lv~l  320 (520)
                      +-+|..|+.-              .+. ++....+.|+-|-.+|....+.     .+...   ..+-.+.+=..+.+...
T Consensus       222 ~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI  301 (866)
T KOG1062|consen  222 PSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTI  301 (866)
T ss_pred             HHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence            7777777641              113 3334777777776665432110     00000   00000000001112222


Q ss_pred             HhcCCChhHHHHHHHHHHHhccChh-hHHHHHhcCCh---------------HHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 010019          321 LHAGLSSPSLISASIALKAVAVNDE-ICKSVAENGGI---------------DALLRCIDDSGLQGNKTVARICCSLLSK  384 (520)
Q Consensus       321 L~~~~~~~~~~~a~~aL~~La~~~e-~~~~i~~~Ggv---------------~~Ll~lL~~~~~~~~~~v~~~al~aL~~  384 (520)
                      +.-.++.++.+-|+-.|+....+++ |.+-+. ..++               ..++++|++    +|+.+.+.|+.++..
T Consensus       302 ~~I~~~~~LrvlainiLgkFL~n~d~NirYva-Ln~L~r~V~~d~~avqrHr~tIleCL~D----pD~SIkrralELs~~  376 (866)
T KOG1062|consen  302 MDIRSNSGLRVLAINILGKFLLNRDNNIRYVA-LNMLLRVVQQDPTAVQRHRSTILECLKD----PDVSIKRRALELSYA  376 (866)
T ss_pred             HhccCCchHHHHHHHHHHHHhcCCccceeeee-hhhHHhhhcCCcHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHH
Confidence            2212334556666666666554433 322211 1111               235566664    346899999998887


Q ss_pred             hhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019          385 LAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (520)
Q Consensus       385 La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~  430 (520)
                      |. +..|...|++     .|+..|.  +.++..+..+.+-+..++.
T Consensus       377 lv-n~~Nv~~mv~-----eLl~fL~--~~d~~~k~~~as~I~~laE  414 (866)
T KOG1062|consen  377 LV-NESNVRVMVK-----ELLEFLE--SSDEDFKADIASKIAELAE  414 (866)
T ss_pred             Hh-ccccHHHHHH-----HHHHHHH--hccHHHHHHHHHHHHHHHH
Confidence            76 4445555544     5777787  5588888888888888874

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=93.38  E-value=0.96  Score=42.76  Aligned_cols=109  Identities=14%  Similarity=0.139  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHhccChhhHHHHHhcC----------------ChHHHHHHHhccCC--CCcHHHHHHHHHHHHHhhCCCch
Q 010019          330 LISASIALKAVAVNDEICKSVAENG----------------GIDALLRCIDDSGL--QGNKTVARICCSLLSKLAGSDSN  391 (520)
Q Consensus       330 ~~~a~~aL~~La~~~e~~~~i~~~G----------------gv~~Ll~lL~~~~~--~~~~~v~~~al~aL~~La~~~~~  391 (520)
                      ..-+|..|+||+..++.+..+.+.+                .+..|++++..+.+  ....+-......+|.|++..++.
T Consensus        12 adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~g   91 (192)
T PF04063_consen   12 ADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEG   91 (192)
T ss_pred             HHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHH
Confidence            3456788889988888777665443                34566666665111  00124567888999999999999


Q ss_pred             HHHHHhcC--C--HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 010019          392 KSAIIENG--G--MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME  441 (520)
Q Consensus       392 k~~Iv~~g--~--l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~  441 (520)
                      |..+.+..  .  +..|+-.+.  +.+..-++-++++|.|+|+....+ ..+..
T Consensus        92 R~~~l~~~~~~~~l~kLl~ft~--~~s~iRR~Gva~~IrNccFd~~~H-~~LL~  142 (192)
T PF04063_consen   92 RQFFLDPQRYDGPLQKLLPFTE--HKSVIRRGGVAGTIRNCCFDTDSH-EWLLS  142 (192)
T ss_pred             HHHHhCchhhhhHHHHHHHHhc--cCcHHHHHHHHHHHHHhhccHhHH-HHhcC
Confidence            99997653  2  445555554  336666778899999999955444 44444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=93.27  E-value=15  Score=40.30  Aligned_cols=258  Identities=15%  Similarity=0.140  Sum_probs=136.3

Q ss_pred             HHHHHhhcccCcHHHHHHHHHHHHHhhcc---cccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 010019          178 VCSICYKMRCGSKRVLDSCLKTMALLVHD---VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK  254 (520)
Q Consensus       178 Lv~lL~~~~~~~~~~~~~al~~La~l~~~---~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr  254 (520)
                      ++.+|++.   .+.+...|+..++++..-   -.....+...|.  .|.+.|.  .+.++++-.-+.++..+-+-+...+
T Consensus       609 iL~~L~~k---~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lg--e~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         609 ILKLLRSK---PPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLG--EDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHhcCC---CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcC--cccHHHHHHHHHHHHHHhhhhcccc
Confidence            44455553   455666666666665410   000112222221  2233332  3467887777777765544332221


Q ss_pred             HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHH
Q 010019          255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISAS  334 (520)
Q Consensus       255 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~  334 (520)
                      -.---.|++|.|..+|++....++.+....+..+|.+....++       +|.-+.  ..--|++.|+++ +.++.++|.
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~-------~rEWMR--IcfeLvd~Lks~-nKeiRR~A~  751 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIG-------VREWMR--ICFELVDSLKSW-NKEIRRNAT  751 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCC-------HHHHHH--HHHHHHHHHHHh-hHHHHHhhh
Confidence            1112358999999999987778888888888888876533221       223322  345577888875 477888888


Q ss_pred             HHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhc-CCHHHHHHHHhccC-
Q 010019          335 IALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIEN-GGMDKLIVVSARFS-  412 (520)
Q Consensus       335 ~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~-g~l~~Lv~lL~~~~-  412 (520)
                      .+++.++.      .|   |--+.|.-+|.. .+.+  +-+...|..++-        ..+.+. |-...+-.+|..|. 
T Consensus       752 ~tfG~Is~------ai---GPqdvL~~Llnn-Lkvq--eRq~RvctsvaI--------~iVae~cgpfsVlP~lm~dY~T  811 (975)
T COG5181         752 ETFGCISR------AI---GPQDVLDILLNN-LKVQ--ERQQRVCTSVAI--------SIVAEYCGPFSVLPTLMSDYET  811 (975)
T ss_pred             hhhhhHHh------hc---CHHHHHHHHHhc-chHH--HHHhhhhhhhhh--------hhhHhhcCchhhHHHHHhcccC
Confidence            88877752      11   222334444443 2111  233334433321        112222 33445555565543 


Q ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 010019          413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR  475 (520)
Q Consensus       413 ~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~  475 (520)
                      .+..||.-.+.+++.+-.+-.+....-+ .-..|.+-.+|..  .++.-..-|.-.|++|+-+
T Consensus       812 Pe~nVQnGvLkam~fmFeyig~~s~dYv-y~itPlleDAltD--rD~vhRqta~nvI~Hl~Ln  871 (975)
T COG5181         812 PEANVQNGVLKAMCFMFEYIGQASLDYV-YSITPLLEDALTD--RDPVHRQTAMNVIRHLVLN  871 (975)
T ss_pred             chhHHHHhHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhcc--cchHHHHHHHHHHHHHhcC
Confidence            4567777777777766543222222221 1245666666744  3454455577788888654

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.25  E-value=4.3  Score=46.87  Aligned_cols=243  Identities=21%  Similarity=0.190  Sum_probs=142.9

Q ss_pred             HHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHH
Q 010019          239 GFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALV  318 (520)
Q Consensus       239 a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv  318 (520)
                      +..+|..+...+++|...|.+++++..++..+-+  ++-.....+.+..|-..|...+             ...-+-.|+
T Consensus       662 gwDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkqv-------------hhqelmalV  726 (2799)
T KOG1788|consen  662 GWDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQV-------------HHQELMALV  726 (2799)
T ss_pred             hHHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCcccc-------------cHHHHHHHH
Confidence            3456666667889999999999999998888843  2333335556666666553322             112356677


Q ss_pred             HHHhcCCC-----------hhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhcc------CCCCcH----HHHH
Q 010019          319 HSLHAGLS-----------SPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDS------GLQGNK----TVAR  376 (520)
Q Consensus       319 ~lL~~~~~-----------~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~------~~~~~~----~v~~  376 (520)
                      +.|+++--           -..+.+..+++|..- +|-.....+.++||...|+..|-..      .+.++.    ++.+
T Consensus       727 dtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfk  806 (2799)
T KOG1788|consen  727 DTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFK  806 (2799)
T ss_pred             HHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHH
Confidence            77876320           145678889999987 5666677788999999888877432      122221    1112


Q ss_pred             HHHHHHHHhh--CCCchHHHHHhcCCHHHHHHHHhccC----------------------CCHHH--HHHHHHHHHHHhc
Q 010019          377 ICCSLLSKLA--GSDSNKSAIIENGGMDKLIVVSARFS----------------------DDASV--LQEVMSIITVLSL  430 (520)
Q Consensus       377 ~al~aL~~La--~~~~~k~~Iv~~g~l~~Lv~lL~~~~----------------------~~~~v--~~~a~~aL~nLa~  430 (520)
                      -..+ |-.++  .++.|+..+-..=--+.+.++|+..+                      -.|.+  --.||..+-.+-.
T Consensus       807 ilFr-lfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfeled  885 (2799)
T KOG1788|consen  807 ILFR-LFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELED  885 (2799)
T ss_pred             HHHH-HHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhccc
Confidence            2222 22222  45666543211101112222222100                      01111  1224444433311


Q ss_pred             ---------CCH-HHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC
Q 010019          431 ---------RSP-ENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH  499 (520)
Q Consensus       431 ---------~~~-~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h  499 (520)
                               +.+ ...+.+..+|+...+++.+-.  ..+++|-+-..++..++.-+|.+...+...|+..+|.++.--+
T Consensus       886 nifavntPsGqfnpdk~~iynagavRvlirslLl--nypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypf  962 (2799)
T KOG1788|consen  886 NIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLL--NYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPF  962 (2799)
T ss_pred             ceeeeccCCCCcCchHhhhcccchhHHHHHHHHh--hChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhh
Confidence                     111 134568889999999988765  4678888888888888666899988888889998888775443

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=93.07  E-value=8.1  Score=42.19  Aligned_cols=225  Identities=11%  Similarity=0.055  Sum_probs=120.3

Q ss_pred             hcCcHHHHHHHHhhcccCcHHHHHH---HHHHHHHhhcccccchhHHhcCCcHH----HHHHHhcCCCChHHHHHHHHHH
Q 010019          171 KNGGVELVCSICYKMRCGSKRVLDS---CLKTMALLVHDVQSTETFRTGGGPKL----LVNILIDGNEDPEILNSGFAVV  243 (520)
Q Consensus       171 ~~Gaip~Lv~lL~~~~~~~~~~~~~---al~~La~l~~~~~~~~~i~~~ggi~~----Lv~lL~~~~~~~~v~~~a~~~L  243 (520)
                      +.+.+|.+-.+|.+.......+...   |.+++.+....          .|++.    ++.-|....  =..-..++..+
T Consensus       211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~----------~aVK~llpsll~~l~~~k--WrtK~aslell  278 (569)
T KOG1242|consen  211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA----------YAVKLLLPSLLGSLLEAK--WRTKMASLELL  278 (569)
T ss_pred             CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc----------chhhHhhhhhHHHHHHHh--hhhHHHHHHHH
Confidence            3456777777776543234455443   44444433322          23333    333332110  01112344445


Q ss_pred             HHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhc
Q 010019          244 AASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHA  323 (520)
Q Consensus       244 ~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~  323 (520)
                      +.++. +..-.-......++|.|.+.|-....++++.+..+|..++.--++.           .|..  .+|.|++.+..
T Consensus       279 g~m~~-~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~-----------dI~~--~ip~Lld~l~d  344 (569)
T KOG1242|consen  279 GAMAD-CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNP-----------DIQK--IIPTLLDALAD  344 (569)
T ss_pred             HHHHH-hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccH-----------HHHH--HHHHHHHHhcC
Confidence            44332 2222334445578999999998776788888888888887654442           2332  57888888864


Q ss_pred             CCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHH
Q 010019          324 GLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDK  403 (520)
Q Consensus       324 ~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~  403 (520)
                      -. . -...+...|..=+.    .. .++.-.+..++-+|.......+..+.+.++..++|++.--+....+.  --++.
T Consensus       345 p~-~-~~~e~~~~L~~ttF----V~-~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~la--pfl~~  415 (569)
T KOG1242|consen  345 PS-C-YTPECLDSLGATTF----VA-EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLA--PFLPS  415 (569)
T ss_pred             cc-c-chHHHHHhhcceee----ee-eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHh--hhHHH
Confidence            22 1 12333333333221    11 12333455566666554443445788999999999985432233222  23334


Q ss_pred             HHHHHhcc--CCCHHHHHHHHHHHHHHhc
Q 010019          404 LIVVSARF--SDDASVLQEVMSIITVLSL  430 (520)
Q Consensus       404 Lv~lL~~~--~~~~~v~~~a~~aL~nLa~  430 (520)
                      |+.-++.-  ...|+++.-+..+|+.+-.
T Consensus       416 Llp~lk~~~~d~~PEvR~vaarAL~~l~e  444 (569)
T KOG1242|consen  416 LLPGLKENLDDAVPEVRAVAARALGALLE  444 (569)
T ss_pred             HhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence            44333321  2368999999999977654

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.94  E-value=7.4  Score=37.97  Aligned_cols=159  Identities=14%  Similarity=0.066  Sum_probs=101.0

Q ss_pred             cHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCC---CChHHHHHHHHHHHHHhcCChhh-HHHHHhcCCHH
Q 010019          189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN---EDPEILNSGFAVVAASATGNEVV-KESYMELKIDE  264 (520)
Q Consensus       189 ~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~---~~~~v~~~a~~~L~~~~~~~e~n-r~~i~~~g~i~  264 (520)
                      ++...++|+..+-.+...-+.+..|+++...-.+-.+|...+   ..+-+.-.++.+|+.+...++.. -..+...+++|
T Consensus        92 qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP  171 (293)
T KOG3036|consen   92 QSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP  171 (293)
T ss_pred             ccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence            344578888888777766666888898887777777775433   23456667788888887544433 33455789999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH-cCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC
Q 010019          265 LILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK-IGIARALVHSLHAGLSSPSLISASIALKAVAVN  343 (520)
Q Consensus       265 ~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~-~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~  343 (520)
                      ..++.|..+++....-|...+..+-.+|..--=..+.++   .+.. .-.+..++.-|.+.++..+++.+.....+|+.+
T Consensus       172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~e---RF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAE---RFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence            999999998765555566666666666543211111111   1211 123444555555555566778888888888877


Q ss_pred             hhhHHHH
Q 010019          344 DEICKSV  350 (520)
Q Consensus       344 ~e~~~~i  350 (520)
                      +..+..+
T Consensus       249 prar~aL  255 (293)
T KOG3036|consen  249 PRARAAL  255 (293)
T ss_pred             HHHHHHH
Confidence            7665543

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.91  E-value=2.3  Score=46.65  Aligned_cols=149  Identities=14%  Similarity=0.136  Sum_probs=98.8

Q ss_pred             HHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHH
Q 010019          347 CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSII  425 (520)
Q Consensus       347 ~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL  425 (520)
                      -..|+..|+.-.++.-|.+-    =-+|.++|...+..||. .|....     ..+..|+.+++  .+...|+..|.-+|
T Consensus       366 ~~siI~sGACGA~VhGlEDE----f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfN--DE~~~VRL~ai~aL  434 (823)
T KOG2259|consen  366 EESIIPSGACGALVHGLEDE----FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFN--DEIEVVRLKAIFAL  434 (823)
T ss_pred             ccccccccccceeeeechHH----HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence            34577788877777766652    13899999999999995 454333     35778999998  66789999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcchHHH
Q 010019          426 TVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDA  505 (520)
Q Consensus       426 ~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~~~~  505 (520)
                      ..|+.+      -.+....++.+...|...  ...+..+.--.|.+. ..+.-.+-.+.   +.. +-..+..||..++.
T Consensus       435 ~~Is~~------l~i~eeql~~il~~L~D~--s~dvRe~l~elL~~~-~~~d~~~i~m~---v~~-lL~~L~kyPqDrd~  501 (823)
T KOG2259|consen  435 TMISVH------LAIREEQLRQILESLEDR--SVDVREALRELLKNA-RVSDLECIDMC---VAH-LLKNLGKYPQDRDE  501 (823)
T ss_pred             HHHHHH------heecHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc-CCCcHHHHHHH---HHH-HHHHhhhCCCCcHH
Confidence            988853      122234567777888763  455655544445443 22222222221   222 33556788999999


Q ss_pred             HHHHHHHcCCCCCC
Q 010019          506 ATDALRDLGLDDYN  519 (520)
Q Consensus       506 a~aALr~Lg~~~~n  519 (520)
                      ..+++++.|=+..|
T Consensus       502 i~~cm~~iGqnH~~  515 (823)
T KOG2259|consen  502 ILRCMGRIGQNHRR  515 (823)
T ss_pred             HHHHHHHHhccChh
Confidence            99999999876543

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.76  E-value=9.6  Score=42.43  Aligned_cols=93  Identities=14%  Similarity=0.166  Sum_probs=61.3

Q ss_pred             HHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHH
Q 010019          383 SKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQL  461 (520)
Q Consensus       383 ~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~v  461 (520)
                      -+|+ ..|+..+.+.+  ++..|-++|.  +..+.++.-|+-.++.|+..  +.....+... .+.++..|++. .|..+
T Consensus       314 I~l~~h~D~e~~ll~~--~~~~Lg~fls--~rE~NiRYLaLEsm~~L~ss--~~s~davK~h-~d~Ii~sLkte-rDvSi  385 (938)
T KOG1077|consen  314 ISLAIHLDSEPELLSR--AVNQLGQFLS--HRETNIRYLALESMCKLASS--EFSIDAVKKH-QDTIINSLKTE-RDVSI  385 (938)
T ss_pred             HHHHHHcCCcHHHHHH--HHHHHHHHhh--cccccchhhhHHHHHHHHhc--cchHHHHHHH-HHHHHHHhccc-cchHH
Confidence            3444 34555555554  5777777776  55677777788888888753  3333333333 78888899866 46778


Q ss_pred             HHHHHHHHHHHhhhChhhHHHHHh
Q 010019          462 QRSSCFMIRNLVARNPENRKLLLS  485 (520)
Q Consensus       462 qk~A~~aL~nL~~~~~e~~~~l~~  485 (520)
                      .+.|.-+|..|+  +.+|.+.+++
T Consensus       386 rrravDLLY~mc--D~~Nak~IV~  407 (938)
T KOG1077|consen  386 RRRAVDLLYAMC--DVSNAKQIVA  407 (938)
T ss_pred             HHHHHHHHHHHh--chhhHHHHHH
Confidence            889999998885  4566666554

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=92.75  E-value=13  Score=37.98  Aligned_cols=188  Identities=17%  Similarity=0.188  Sum_probs=113.5

Q ss_pred             CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 010019          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV  252 (520)
Q Consensus       173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~  252 (520)
                      -.++.+++++.+.   +..+...+...+..+-          ....++.+.++|..  .+..+...+..+|+.+  +++ 
T Consensus        43 ~~~~~~~~~l~~~---~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d--~~~~vr~~a~~aLg~~--~~~-  104 (335)
T COG1413          43 EAADELLKLLEDE---DLLVRLSAAVALGELG----------SEEAVPLLRELLSD--EDPRVRDAAADALGEL--GDP-  104 (335)
T ss_pred             hhHHHHHHHHcCC---CHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcC--CCHHHHHHHHHHHHcc--CCh-
Confidence            4677788888763   4555544444444321          12246777888763  4566777777766542  222 


Q ss_pred             hHHHHHhcCCHHHHHHHHhc-CChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChh---
Q 010019          253 VKESYMELKIDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSP---  328 (520)
Q Consensus       253 nr~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~---  328 (520)
                              ..++.|+.+|.. ++..++..+.++|..+-.                    ..++.+|+..+.......   
T Consensus       105 --------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~--------------------~~a~~~l~~~l~~~~~~~a~~  156 (335)
T COG1413         105 --------EAVPPLVELLENDENEGVRAAAARALGKLGD--------------------ERALDPLLEALQDEDSGSAAA  156 (335)
T ss_pred             --------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc--------------------hhhhHHHHHHhccchhhhhhh
Confidence                    357889999986 344666678888875432                    234788888887532110   


Q ss_pred             --------HHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCC
Q 010019          329 --------SLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGG  400 (520)
Q Consensus       329 --------~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~  400 (520)
                              +...+..+|+.          +.+.-.++.+...+...    ...+...+..+|..+....        ...
T Consensus       157 ~~~~~~~~~r~~a~~~l~~----------~~~~~~~~~l~~~l~~~----~~~vr~~Aa~aL~~~~~~~--------~~~  214 (335)
T COG1413         157 ALDAALLDVRAAAAEALGE----------LGDPEAIPLLIELLEDE----DADVRRAAASALGQLGSEN--------VEA  214 (335)
T ss_pred             hccchHHHHHHHHHHHHHH----------cCChhhhHHHHHHHhCc----hHHHHHHHHHHHHHhhcch--------hhH
Confidence                    11111111111          22333467777777763    2378888998988877544        244


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019          401 MDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (520)
Q Consensus       401 l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~  430 (520)
                      .+.+...+.  ..+..++..++.+|..+-.
T Consensus       215 ~~~l~~~~~--~~~~~vr~~~~~~l~~~~~  242 (335)
T COG1413         215 ADLLVKALS--DESLEVRKAALLALGEIGD  242 (335)
T ss_pred             HHHHHHHhc--CCCHHHHHHHHHHhcccCc
Confidence            577777777  6678888888888876653

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=92.71  E-value=1.1  Score=44.60  Aligned_cols=182  Identities=12%  Similarity=0.112  Sum_probs=106.2

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcC--ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchH
Q 010019          315 RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG--GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK  392 (520)
Q Consensus       315 ~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~G--gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k  392 (520)
                      ..+..++...+.. -+--+.-.++-++.++.....+...+  ....+..++....+......+--++++|.|+-.++..+
T Consensus        66 ~~~~~~~~~Wp~~-~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~  144 (268)
T PF08324_consen   66 ILLLKILLSWPPE-SRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR  144 (268)
T ss_dssp             HHHHHHHCCS-CC-C-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred             HHHHHHHHhCCCc-cchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence            4444444444321 12234444444445555444443333  24566666665543344677888999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHhccCC-----CHHHHHHHHHHHHHHhcCCHHHHH-HHHhcCcHHHHHHHHHhCCCCHHHHHHHH
Q 010019          393 SAIIENGGMDKLIVVSARFSD-----DASVLQEVMSIITVLSLRSPENAA-RAMEAGSGDLAIQAMLKFPNAQQLQRSSC  466 (520)
Q Consensus       393 ~~Iv~~g~l~~Lv~lL~~~~~-----~~~v~~~a~~aL~nLa~~~~~~~~-~i~~~G~i~~lv~~L~~~~~~~~vqk~A~  466 (520)
                      ..+.+... ..+.+.+.....     ++.++-.++..+.|++...-.... .=.....+..+++.+.....++++...+.
T Consensus       145 ~~~~~~~~-~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L  223 (268)
T PF08324_consen  145 QLLLSHFD-SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL  223 (268)
T ss_dssp             HHHHCTHH-TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred             HHHHhccc-chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence            88875432 244444443322     577888888888899752111110 00000123455554444446899999999


Q ss_pred             HHHHHHhhhChhhHHHHHhCCHHHHHHHHHHh
Q 010019          467 FMIRNLVARNPENRKLLLSNGVEKLIRQAKEN  498 (520)
Q Consensus       467 ~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~  498 (520)
                      .||.+|+...+.........|+...+......
T Consensus       224 vAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~  255 (268)
T PF08324_consen  224 VALGTLLSSSDSAKQLAKSLDVKSVLSKKANK  255 (268)
T ss_dssp             HHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHH
T ss_pred             HHHHHHhccChhHHHHHHHcChHHHHHHHHhc
Confidence            99999987666665555557888887766543

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.44  E-value=7.5  Score=45.02  Aligned_cols=265  Identities=16%  Similarity=0.155  Sum_probs=151.5

Q ss_pred             HHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCC-
Q 010019          152 KLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN-  230 (520)
Q Consensus       152 ~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~-  230 (520)
                      -|--+.|.  +.+|...+.++.++..++.++-+    + +-.-..|..+..++...+   .-+...-+..+|+.|+++- 
T Consensus       665 cLisllKn--nteNqklFreanGvklilpflin----d-ehRSslLrivscLitvdp---kqvhhqelmalVdtLksgmv  734 (2799)
T KOG1788|consen  665 CLISLLKN--NTENQKLFREANGVKLILPFLIN----D-EHRSSLLRIVSCLITVDP---KQVHHQELMALVDTLKSGMV  734 (2799)
T ss_pred             HHHHHHhc--cchhhHHHHhhcCceEEEEeeec----h-HHHHHHHHHHHHHhccCc---ccccHHHHHHHHHHHHhcce
Confidence            35556676  88999999999998888887732    2 122223455555543321   1111122346677776521 


Q ss_pred             -----CCh----HHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcC-------C--h-----HHHHHHHHHH-H
Q 010019          231 -----EDP----EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-------R--N-----DSIQSLYDAI-R  286 (520)
Q Consensus       231 -----~~~----~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~-------~--~-----~~~~~a~~aL-~  286 (520)
                           ++-    .+.+..+.++..+-.-+-..+..|.++|+...|...|-..       +  +     +...-..+++ .
T Consensus       735 t~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTl  814 (2799)
T KOG1788|consen  735 TRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTL  814 (2799)
T ss_pred             eccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHH
Confidence                 111    2334455666666555566778889999999888887542       1  1     1111111211 1


Q ss_pred             HhcCCCCcchhhhhhc--h-HHHHHHHcC---------CHHHHHHHHhc---CCChhHHHHHHHHHHHhccC--------
Q 010019          287 VLLTPDDDQVVASQVY--G-YARRFAKIG---------IARALVHSLHA---GLSSPSLISASIALKAVAVN--------  343 (520)
Q Consensus       287 ~Ls~~dd~~v~~~~a~--~-~a~~i~~~g---------~l~~Lv~lL~~---~~~~~~~~~a~~aL~~La~~--------  343 (520)
                      .+|.+..++..|+..-  + ....+.+.|         .|..|.++--.   +++-..-..||..+..+-.+        
T Consensus       815 avcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPs  894 (2799)
T KOG1788|consen  815 AVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPS  894 (2799)
T ss_pred             HHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCC
Confidence            2445555555443210  1 112333445         22222222111   11111123566666665321        


Q ss_pred             ---hhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccC-CCHHHH
Q 010019          344 ---DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFS-DDASVL  418 (520)
Q Consensus       344 ---~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~-~~~~v~  418 (520)
                         .-.+++|..+|++..+++.+-...    +.++-+-+..|-.++ .+|.|....-..|.++.|++.+..+. ++....
T Consensus       895 Gqfnpdk~~iynagavRvlirslLlny----pK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfL  970 (2799)
T KOG1788|consen  895 GQFNPDKQKIYNAGAVRVLIRSLLLNY----PKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFL  970 (2799)
T ss_pred             CCcCchHhhhcccchhHHHHHHHHhhC----hHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHh
Confidence               124678999999999998876532    278889999999998 57888888888999999999886543 344455


Q ss_pred             HHHHHHHHHHhc
Q 010019          419 QEVMSIITVLSL  430 (520)
Q Consensus       419 ~~a~~aL~nLa~  430 (520)
                      -++..++..|+.
T Consensus       971 shalkIvemLga  982 (2799)
T KOG1788|consen  971 SHALKIVEMLGA  982 (2799)
T ss_pred             hccHHHHHHHhh
Confidence            666666655553

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.33  E-value=11  Score=40.10  Aligned_cols=139  Identities=14%  Similarity=0.112  Sum_probs=96.0

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC---C--hhHHHH-HHHHHHH
Q 010019          266 ILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL---S--SPSLIS-ASIALKA  339 (520)
Q Consensus       266 Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~---~--~~~~~~-a~~aL~~  339 (520)
                      +..+++...++-+-+|.-....++.++|...      .+.|.+.++=|.+-+-.+|++..   |  +.+... +...|..
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a------~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLac   89 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVA------LNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLAC   89 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhh------hhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHH
Confidence            4445554444545556666667888887643      23456778888899999998643   2  234333 3445566


Q ss_pred             hccChhh--HHHHHhcCChHHHHHHHhccCCCC---cHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccC
Q 010019          340 VAVNDEI--CKSVAENGGIDALLRCIDDSGLQG---NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS  412 (520)
Q Consensus       340 La~~~e~--~~~i~~~Ggv~~Ll~lL~~~~~~~---~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~  412 (520)
                      .+..+|.  ...+++  .||.|+++|+...+..   +-.++..+-.+|..+|+.+.....++..|+++.+.++-..|+
T Consensus        90 FC~~pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~  165 (698)
T KOG2611|consen   90 FCRVPELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPD  165 (698)
T ss_pred             HhCChhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCC
Confidence            6666663  445554  4899999998764431   245899999999999999999999999999999998766544

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=92.16  E-value=4.5  Score=40.89  Aligned_cols=221  Identities=12%  Similarity=0.040  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhcC-CHHHHHHHHhcC-C-hHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH-cC
Q 010019          237 NSGFAVVAASATGNEVVKESYMELK-IDELILEILSRQ-R-NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK-IG  312 (520)
Q Consensus       237 ~~a~~~L~~~~~~~e~nr~~i~~~g-~i~~Lv~lL~~~-~-~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~-~g  312 (520)
                      -.|+.++.++.... +-|..+...+ +-..++++++.+ + .+.+=+..-.++-|+....          .++.|-+ ..
T Consensus       167 lfav~cl~~l~~~~-e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~----------~aqdi~K~~d  235 (432)
T COG5231         167 LFAVSCLSNLEFDV-EKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE----------CAQDIDKMDD  235 (432)
T ss_pred             HHHHHHHhhhhhhH-HHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH----------HHHHHHHHHH
Confidence            35667777776654 4566665444 667888888876 3 2666667767777777542          2334443 25


Q ss_pred             CHHHHHHHHhcCCChhHHHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHH-------
Q 010019          313 IARALVHSLHAGLSSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS-------  383 (520)
Q Consensus       313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~-------  383 (520)
                      .+..|+.+.+......+.+-+|+.+.|++.  .........-.|-+..-+++|....-. +.++....=..=.       
T Consensus       236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkys-DEel~~di~~i~s~l~~~~k  314 (432)
T COG5231         236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYS-DEELVIDIERIRSRLVQNTK  314 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhhhh
Confidence            678888888865444567778888888875  224455566667677777777543211 1233322111111       


Q ss_pred             ----------Hh-----hCCC---------chHHHHHhc--CCHHHHHHHHhccCCCHH-HHHHHHHHHHHHhcCCHHHH
Q 010019          384 ----------KL-----AGSD---------SNKSAIIEN--GGMDKLIVVSARFSDDAS-VLQEVMSIITVLSLRSPENA  436 (520)
Q Consensus       384 ----------~L-----a~~~---------~~k~~Iv~~--g~l~~Lv~lL~~~~~~~~-v~~~a~~aL~nLa~~~~~~~  436 (520)
                                .|     ..+|         .|-..+.+.  ..+..|.++++  +.++. ...-||.=|..+....|+..
T Consensus       315 ~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq--~n~~nt~i~vAc~Di~~~Vr~~PE~~  392 (432)
T COG5231         315 KLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQ--SNNPNTWICVACSDIFQLVRASPEIN  392 (432)
T ss_pred             hhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHh--cCCCCceEeeeHhhHHHHHHhCchHH
Confidence                      11     1111         122222221  23567788887  33333 45568888888888899999


Q ss_pred             HHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019          437 ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV  473 (520)
Q Consensus       437 ~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~  473 (520)
                      ..+..-|+-+.++++|. | +++.|.-+|..|+..+.
T Consensus       393 ~vl~Kyg~k~~im~L~n-h-~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         393 AVLSKYGVKEIIMNLIN-H-DDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHHhhhHHHHHHHhc-C-CCchhhHHHHHHHHHHH
Confidence            99999999999999884 5 57889999988887664

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=92.07  E-value=8.1  Score=40.59  Aligned_cols=100  Identities=14%  Similarity=0.136  Sum_probs=75.3

Q ss_pred             CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccc-hhHHhcCCcHHHHHHHh-cC-CCChHHHHHHHHHHHHHhcC
Q 010019          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVNILI-DG-NEDPEILNSGFAVVAASATG  249 (520)
Q Consensus       173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~-~~i~~~ggi~~Lv~lL~-~~-~~~~~v~~~a~~~L~~~~~~  249 (520)
                      -....|..+++....-.+.+...|+..++.+.+..+.. ..+.++|.++.+++.+. .. ..+.++....-.++..+|. 
T Consensus       106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-  184 (379)
T PF06025_consen  106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-  184 (379)
T ss_pred             hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-
Confidence            33445556776655455677888899999998776553 45556788888999887 33 3467887777788888886 


Q ss_pred             ChhhHHHHHhcCCHHHHHHHHhcC
Q 010019          250 NEVVKESYMELKIDELILEILSRQ  273 (520)
Q Consensus       250 ~e~nr~~i~~~g~i~~Lv~lL~~~  273 (520)
                      |....+.+.+.+.++.+++++.+.
T Consensus       185 N~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  185 NNRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             CHHHHHHHHhcChHHHHHHHhCCH
Confidence            677889999999999999999764

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=92.00  E-value=15  Score=42.81  Aligned_cols=135  Identities=16%  Similarity=0.207  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHH
Q 010019          372 KTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA  451 (520)
Q Consensus       372 ~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~  451 (520)
                      ..|.+.|+.-++.+++...  ..+++ .++..+++++. ..+++..-..+|-+|+.|+.+.--.-..+  ...++.++..
T Consensus       355 t~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~-p~e~~~aWHgacLaLAELA~rGlLlps~l--~dVvplI~ka  428 (1133)
T KOG1943|consen  355 TVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFN-PAEDDSAWHGACLALAELALRGLLLPSLL--EDVVPLILKA  428 (1133)
T ss_pred             chhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcC-cCCchhHHHHHHHHHHHHHhcCCcchHHH--HHHHHHHHHH
Confidence            4688888888888886543  22222 35556666554 33446666789999999997531111111  1134555555


Q ss_pred             H------HhCCCCHHHHHHHHHHHHHHhh-hChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHH
Q 010019          452 M------LKFPNAQQLQRSSCFMIRNLVA-RNPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRD  512 (520)
Q Consensus       452 L------~~~~~~~~vqk~A~~aL~nL~~-~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~  512 (520)
                      +      -.|+.-..|.-.||.++..++. +++.-.+.++..=+..+|..+.-.- -.|+..|+|||.-
T Consensus       429 L~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE  497 (1133)
T KOG1943|consen  429 LHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE  497 (1133)
T ss_pred             hhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence            4      1133445577778887777753 4666566677655556665554333 3799999999863

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=91.75  E-value=22  Score=38.77  Aligned_cols=163  Identities=14%  Similarity=0.014  Sum_probs=89.4

Q ss_pred             CHHHHHHHHhcCC---ChhHHHHHHHHHHHhc-cChhh-HHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC
Q 010019          313 IARALVHSLHAGL---SSPSLISASIALKAVA-VNDEI-CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG  387 (520)
Q Consensus       313 ~l~~Lv~lL~~~~---~~~~~~~a~~aL~~La-~~~e~-~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~  387 (520)
                      .+.+++......-   +-.-...++.|++.+. ..++- ...++ ...+|.+...|.+..    --+...+.++++.+|.
T Consensus       363 i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~----l~vk~ttAwc~g~iad  437 (858)
T COG5215         363 IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSC----LWVKSTTAWCFGAIAD  437 (858)
T ss_pred             hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccce----eehhhHHHHHHHHHHH
Confidence            3555555554321   2233456778888877 33333 34444 345788888887632    2466778888998885


Q ss_pred             CCchHHHHHhcCCHHHHHHH-HhccCCCHHHHHHHHHHHHHHhcCCHHHHHH---HHhcCcHHHHHHHHHhC----CCCH
Q 010019          388 SDSNKSAIIENGGMDKLIVV-SARFSDDASVLQEVMSIITVLSLRSPENAAR---AMEAGSGDLAIQAMLKF----PNAQ  459 (520)
Q Consensus       388 ~~~~k~~Iv~~g~l~~Lv~l-L~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~---i~~~G~i~~lv~~L~~~----~~~~  459 (520)
                      +  ....|--+|-+++.++. +..-.++|.+.-+++|+.-||+.+-++.-..   ++ ..-.+.++..|-..    -++.
T Consensus       438 ~--va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l-~~fY~ai~~~Lv~~t~~~~Ne~  514 (858)
T COG5215         438 H--VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFL-AKFYLAILNALVKGTELALNES  514 (858)
T ss_pred             H--HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchh-HHHHHHHHHHHHHHHHhhccch
Confidence            4  23344445666665553 3223468999999999999998543222211   00 11223333333211    1233


Q ss_pred             HHHHHHHHHHHHHhhhChhhHHHH
Q 010019          460 QLQRSSCFMIRNLVARNPENRKLL  483 (520)
Q Consensus       460 ~vqk~A~~aL~nL~~~~~e~~~~l  483 (520)
                      .....+-.+|..|....++....+
T Consensus       515 n~R~s~fsaLgtli~~~~d~V~~~  538 (858)
T COG5215         515 NLRVSLFSALGTLILICPDAVSDI  538 (858)
T ss_pred             hHHHHHHHHHHHHHhhcchhHHHH
Confidence            444456667776665555544443

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.70  E-value=0.28  Score=42.43  Aligned_cols=70  Identities=16%  Similarity=0.340  Sum_probs=55.3

Q ss_pred             hHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019          356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (520)
Q Consensus       356 v~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~  430 (520)
                      ++.|+.+|....   ++.++.-||.=|+.++. .|..|..+-+.|+=+.++++|.  ++++.|+.+|+.++.-|..
T Consensus        45 lk~L~~lL~~s~---d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~--h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   45 LKKLIKLLDKSD---DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN--HEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHH-SHH---HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCC---CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence            468888996542   35788889999999984 5788888878888899999998  6799999999999887764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=91.58  E-value=4.6  Score=43.58  Aligned_cols=157  Identities=15%  Similarity=0.177  Sum_probs=104.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCC---hhHHHHHHHHHHHh
Q 010019          264 ELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS---SPSLISASIALKAV  340 (520)
Q Consensus       264 ~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~---~~~~~~a~~aL~~L  340 (520)
                      ..+.+++.++++..+..+...|..|+.+-          ..++.+....|+..|..++.++..   .+++.....++..|
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~----------~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~el  155 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSLDP----------TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSEL  155 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhccccH----------HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHH
Confidence            45677788877766666888888888753          346788888999999999998764   35555556666555


Q ss_pred             ccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-CchHHHHHhcCCHHHHHHHHhccCCCHHHHH
Q 010019          341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQ  419 (520)
Q Consensus       341 a~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~  419 (520)
                      ....-.....+...+|.....+.....  .++.+...|+..|-++..+ +.-++.|.+.--++.|+.-++  ..+..++.
T Consensus       156 mehgvvsW~~~~~~fV~~~a~~V~~~~--~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq--~~n~~i~~  231 (713)
T KOG2999|consen  156 MEHGVVSWESVSNDFVVSMASYVNAKR--EDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQ--VSNQRIQT  231 (713)
T ss_pred             HhhceeeeeecccHHHHHHHHHHhhhh--hcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHH--hcchHHHH
Confidence            321111111222233333333332211  1246788999999999855 456677777777899999998  66888888


Q ss_pred             HHHHHHHHHhcCCHH
Q 010019          420 EVMSIITVLSLRSPE  434 (520)
Q Consensus       420 ~a~~aL~nLa~~~~~  434 (520)
                      .|.+.|-.|..+.|+
T Consensus       232 ~aial~nal~~~a~~  246 (713)
T KOG2999|consen  232 CAIALLNALFRKAPD  246 (713)
T ss_pred             HHHHHHHHHHhhCCh
Confidence            898888888766554

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=91.22  E-value=0.94  Score=35.70  Aligned_cols=68  Identities=13%  Similarity=0.207  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCC
Q 010019          330 LISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGG  400 (520)
Q Consensus       330 ~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~  400 (520)
                      ++.+.||+.+++..+.-.+.+.+.+.++.++++...++-   ..+.-.|..+|+-++...+..+.+-+.|.
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v---~siRGT~fy~Lglis~T~~G~~~L~~~gW   71 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPV---LSIRGTCFYVLGLISSTEEGAEILDELGW   71 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCc---cchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence            578999999999887777777778999999998886543   37888999999999999888888877664

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=91.10  E-value=12  Score=44.24  Aligned_cols=72  Identities=15%  Similarity=0.126  Sum_probs=49.1

Q ss_pred             HhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCch-HHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019          351 AENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSN-KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (520)
Q Consensus       351 ~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~-k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa  429 (520)
                      ++.+.+|.|.+-|.+. ++   -|+..|+++|..|....-. |.++.+  .++.+.-+|-  ..+.-|+..+|..|..++
T Consensus       653 ~seyllPLl~Q~ltD~-EE---~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~--hPN~WIR~~~~~iI~~~~  724 (1431)
T KOG1240|consen  653 VSEYLLPLLQQGLTDG-EE---AVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLC--HPNLWIRRAVLGIIAAIA  724 (1431)
T ss_pred             HHHHHHHHHHHhccCc-ch---hhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhhee--CchHHHHHHHHHHHHHHH
Confidence            4566678888888774 32   6889999999999854432 333332  3344444554  458899999999999876


Q ss_pred             c
Q 010019          430 L  430 (520)
Q Consensus       430 ~  430 (520)
                      .
T Consensus       725 ~  725 (1431)
T KOG1240|consen  725 R  725 (1431)
T ss_pred             h
Confidence            3

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=91.01  E-value=3.5  Score=40.63  Aligned_cols=149  Identities=13%  Similarity=0.184  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh----HHH-HHHHHHHHHhcCCCCcchhhhhhchHHHHH
Q 010019          234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----DSI-QSLYDAIRVLLTPDDDQVVASQVYGYARRF  308 (520)
Q Consensus       234 ~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~----~~~-~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i  308 (520)
                      .-.+.++..+..+++ |++.|..|+++...-.|...|+..+.    +-+ -...++++.|...||..+        ..-+
T Consensus        65 nRVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~ev--------i~fL  135 (262)
T PF04078_consen   65 NRVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEV--------ISFL  135 (262)
T ss_dssp             HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHH--------HHHH
T ss_pred             HHHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHH--------HHHH
Confidence            344667777777776 78899999999998888888876532    444 347889999998776543        2244


Q ss_pred             HHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChh----------hHHHHHhcCChHHHHHHHhccCCCCcHHHHHHH
Q 010019          309 AKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDE----------ICKSVAENGGIDALLRCIDDSGLQGNKTVARIC  378 (520)
Q Consensus       309 ~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e----------~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~a  378 (520)
                      .....+|..+..|..++ .-.+.-|...+..+..++.          .-..+..  ++..++.-|...   +++.+.+..
T Consensus       136 l~tEiiplcLr~me~Gs-elSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~--vL~~mV~~l~~~---pS~RLLKhI  209 (262)
T PF04078_consen  136 LQTEIIPLCLRIMEFGS-ELSKTVATFILQKILLDDVGLNYICQTAERFFAVAM--VLNKMVEQLVKQ---PSPRLLKHI  209 (262)
T ss_dssp             HCTTHHHHHHHHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHHHHS-----HHHHHHH
T ss_pred             HhhchHHHHHHHHHhcc-HHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHH--HHHHHHHHHccC---CChhHHHHH
Confidence            46789999999999875 2233334444444443333          2222221  233344444432   346899999


Q ss_pred             HHHHHHhhCCCchHHHHHh
Q 010019          379 CSLLSKLAGSDSNKSAIIE  397 (520)
Q Consensus       379 l~aL~~La~~~~~k~~Iv~  397 (520)
                      +++-..|+.++..+.++.+
T Consensus       210 IrCYlRLsdnprar~aL~~  228 (262)
T PF04078_consen  210 IRCYLRLSDNPRAREALRQ  228 (262)
T ss_dssp             HHHHHHHTTSTTHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHH
Confidence            9999999999999988875

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=90.53  E-value=13  Score=42.40  Aligned_cols=97  Identities=11%  Similarity=0.142  Sum_probs=68.9

Q ss_pred             HHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCH
Q 010019          381 LLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQ  459 (520)
Q Consensus       381 aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~  459 (520)
                      +|+++. .++++...+++.||+..+...++.+ ++..++..+++.|.|++...+..-......-.--.....+....+..
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence            788887 5689999999999999999999988 78899999999999999754332222221111112222343343455


Q ss_pred             HHHHHHHHHHHHHhhhChh
Q 010019          460 QLQRSSCFMIRNLVARNPE  478 (520)
Q Consensus       460 ~vqk~A~~aL~nL~~~~~e  478 (520)
                      +.-..|+..|+.+...+++
T Consensus       573 ersY~~~siLa~ll~~~~~  591 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEK  591 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCc
Confidence            6777899999999876444

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=90.53  E-value=13  Score=38.27  Aligned_cols=225  Identities=11%  Similarity=0.120  Sum_probs=133.3

Q ss_pred             HHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccccc-c----hhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHH
Q 010019          169 ATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-T----ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVV  243 (520)
Q Consensus       169 i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~-~----~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L  243 (520)
                      +.+.|.++.|+..|...   +-+....+....++++..+.+ +    .+.+.....+.+..++ .+.+++++...+-..|
T Consensus        72 i~~~dll~~Li~~L~~L---~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~-~gy~~~dial~~g~ml  147 (335)
T PF08569_consen   72 IYRSDLLYLLIRNLPKL---DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILL-RGYENPDIALNCGDML  147 (335)
T ss_dssp             HHHHTHHHHHHHTGGGS----HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHH-HGGGSTTTHHHHHHHH
T ss_pred             HHHhCHHHHHHHHhhhC---CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHH-HHhcCccccchHHHHH
Confidence            44568888888888764   444444445555666544321 1    2223333344444444 4456777776666666


Q ss_pred             HHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHc---CCHHHHHHH
Q 010019          244 AASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI---GIARALVHS  320 (520)
Q Consensus       244 ~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~---g~l~~Lv~l  320 (520)
                      +.+ .+++.....+.....+..+.+.+..++=++...|..++..|-+.... +        +..+...   ........+
T Consensus       148 Rec-~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~-~--------~a~fl~~n~d~ff~~~~~L  217 (335)
T PF08569_consen  148 REC-IKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKK-L--------VAEFLSNNYDRFFQKYNKL  217 (335)
T ss_dssp             HHH-TTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHH-H--------HHHHHHHTHHHHHHHHHHH
T ss_pred             HHH-HhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHH-H--------HHHHHHHHHHHHHHHHHHH
Confidence            665 57888777888888888888888765558888888888876543211 1        0122221   234566677


Q ss_pred             HhcCCChhHHHHHHHHHHHhccChhhHHHHH----hcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHH
Q 010019          321 LHAGLSSPSLISASIALKAVAVNDEICKSVA----ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAII  396 (520)
Q Consensus       321 L~~~~~~~~~~~a~~aL~~La~~~e~~~~i~----~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv  396 (520)
                      |.+. +=-++..+...|+.|..+..|...+.    +..-+..++.+|++.    ++.++-+|.-++.-...+|..-..|.
T Consensus       218 l~s~-NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~----sk~Iq~eAFhvFKvFVANp~K~~~I~  292 (335)
T PF08569_consen  218 LESS-NYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK----SKNIQFEAFHVFKVFVANPNKPPPIV  292 (335)
T ss_dssp             CT-S-SHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-----HHHHHHHHHHHHHHHH-SS-BHHHH
T ss_pred             ccCC-CeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc----chhhhHHHHHHHHHHHhCCCCChHHH
Confidence            7654 33467889999999987777755433    334467777777763    35899999999988876665444443


Q ss_pred             hc--CCHHHHHHHHhccC
Q 010019          397 EN--GGMDKLIVVSARFS  412 (520)
Q Consensus       397 ~~--g~l~~Lv~lL~~~~  412 (520)
                      +-  .-=+.|+..|..+.
T Consensus       293 ~iL~~Nr~kLl~fl~~f~  310 (335)
T PF08569_consen  293 DILIKNREKLLRFLKDFH  310 (335)
T ss_dssp             HHHHHTHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHhCC
Confidence            21  11245666665543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.21  E-value=7.8  Score=43.59  Aligned_cols=138  Identities=15%  Similarity=0.214  Sum_probs=86.0

Q ss_pred             ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-Chh-------
Q 010019          274 RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDE-------  345 (520)
Q Consensus       274 ~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e-------  345 (520)
                      +..++-++|.+++.|+--.+.                ...+++|+.+|++++  +++.-.+..+..++. +++       
T Consensus       300 n~sVVmA~aql~y~lAP~~~~----------------~~i~kaLvrLLrs~~--~vqyvvL~nIa~~s~~~~~lF~P~lK  361 (968)
T KOG1060|consen  300 NPSVVMAVAQLFYHLAPKNQV----------------TKIAKALVRLLRSNR--EVQYVVLQNIATISIKRPTLFEPHLK  361 (968)
T ss_pred             CcHHHHHHHhHHHhhCCHHHH----------------HHHHHHHHHHHhcCC--cchhhhHHHHHHHHhcchhhhhhhhh
Confidence            347888889999988853211                234789999999865  233333333333331 111       


Q ss_pred             ---------h---------HHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-CchHHHHHhcCCHHHHHH
Q 010019          346 ---------I---------CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIV  406 (520)
Q Consensus       346 ---------~---------~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~g~l~~Lv~  406 (520)
                               .         -..++..+-|..+++=+..+..+.+..++..+..+|+..|.. .+.     ..-.+.-|+.
T Consensus       362 sFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv-----~~tCL~gLv~  436 (968)
T KOG1060|consen  362 SFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSV-----TDTCLNGLVQ  436 (968)
T ss_pred             ceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCch-----hhHHHHHHHH
Confidence                     1         112445555666665555544444446888888888887743 222     2245678999


Q ss_pred             HHhccCCCHHHHHHHHHHHHHHhcCCHHHH
Q 010019          407 VSARFSDDASVLQEVMSIITVLSLRSPENA  436 (520)
Q Consensus       407 lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~  436 (520)
                      +|+.  .++.|..+++..|..|-.++|..-
T Consensus       437 Llss--hde~Vv~eaV~vIk~Llq~~p~~h  464 (968)
T KOG1060|consen  437 LLSS--HDELVVAEAVVVIKRLLQKDPAEH  464 (968)
T ss_pred             HHhc--ccchhHHHHHHHHHHHHhhChHHH
Confidence            9994  478899999999999988777544

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=89.93  E-value=24  Score=35.98  Aligned_cols=178  Identities=13%  Similarity=0.185  Sum_probs=93.4

Q ss_pred             hHHHHHHHHHHHHHhcCChhhHHHHHh---cCCHHHHHHHHhcCChHHHHHHHHHHHHhcCC----CCcchhhhhhchHH
Q 010019          233 PEILNSGFAVVAASATGNEVVKESYME---LKIDELILEILSRQRNDSIQSLYDAIRVLLTP----DDDQVVASQVYGYA  305 (520)
Q Consensus       233 ~~v~~~a~~~L~~~~~~~e~nr~~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~----dd~~v~~~~a~~~a  305 (520)
                      .+....++..+..+...+. . ..++.   .-.+..+.+.++.+..+-+.-|+.++.-|+..    ++           .
T Consensus        57 ~~~Re~aL~~l~~~l~~~~-~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~-----------~  123 (309)
T PF05004_consen   57 SSTREAALEALIRALSSRY-L-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED-----------S  123 (309)
T ss_pred             HHHHHHHHHHHHHHHHhcc-c-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc-----------H
Confidence            4444555555555543322 1 12221   12466777777776544444566655555433    22           2


Q ss_pred             HHHHHcCCHHHHHHHHhcCCC-hhHHHHHHHHHHHhc---cCh-hhHHHHHhcCChHHHHH--HHhccCC------CCcH
Q 010019          306 RRFAKIGIARALVHSLHAGLS-SPSLISASIALKAVA---VND-EICKSVAENGGIDALLR--CIDDSGL------QGNK  372 (520)
Q Consensus       306 ~~i~~~g~l~~Lv~lL~~~~~-~~~~~~a~~aL~~La---~~~-e~~~~i~~~Ggv~~Ll~--lL~~~~~------~~~~  372 (520)
                      ..+.+ ...|+|...+..... ..+...++.+|+-++   ..+ +......+  .++.+..  .++....      .+++
T Consensus       124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            24443 367888888887653 333344444555443   222 21111111  0111111  1111111      1124


Q ss_pred             HHHHHHHHHHHHhhC-CCch-HHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019          373 TVARICCSLLSKLAG-SDSN-KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (520)
Q Consensus       373 ~v~~~al~aL~~La~-~~~~-k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa  429 (520)
                      .++..|+.+-+-|.. -+.. .....+ ..+|.|+.+|.  +++..|+-.|-.+|+-|.
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~--s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLD--SDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhc--CCCHHHHHHHHHHHHHHH
Confidence            788888888777764 3432 223333 46999999999  789999999888887664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=89.63  E-value=16  Score=41.64  Aligned_cols=154  Identities=11%  Similarity=0.061  Sum_probs=88.0

Q ss_pred             HHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHH
Q 010019          280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDA  358 (520)
Q Consensus       280 ~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~  358 (520)
                      ..=..|..++.++|-..                ..+.++..+. ..|.++++-.-.-|-+.+ .+++-+.         .
T Consensus        39 AmK~iIa~M~~G~dmss----------------Lf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~l---------L   92 (757)
T COG5096          39 AMKKIIAQMSLGEDMSS----------------LFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELAL---------L   92 (757)
T ss_pred             HHHHHHHHHhcCCChHH----------------HHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHH---------H
Confidence            34456666776665322                2455555555 235666665555566665 3332111         1


Q ss_pred             HHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHH
Q 010019          359 LLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR  438 (520)
Q Consensus       359 Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~  438 (520)
                      .++.+.+...++|+.++..|+++|+.|=.     .++.. ..++++.+++.  ..++.|++.|.-++..|-..+++.   
T Consensus        93 avNti~kDl~d~N~~iR~~AlR~ls~l~~-----~el~~-~~~~~ik~~l~--d~~ayVRk~Aalav~kly~ld~~l---  161 (757)
T COG5096          93 AVNTIQKDLQDPNEEIRGFALRTLSLLRV-----KELLG-NIIDPIKKLLT--DPHAYVRKTAALAVAKLYRLDKDL---  161 (757)
T ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHhcCh-----HHHHH-HHHHHHHHHcc--CCcHHHHHHHHHHHHHHHhcCHhh---
Confidence            12222222334566777777777655421     22322 35677777776  567888888888888877555443   


Q ss_pred             HHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010019          439 AMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL  472 (520)
Q Consensus       439 i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL  472 (520)
                      +.+.|.+..+..++..  .+|.|.++|..++..+
T Consensus       162 ~~~~g~~~~l~~l~~D--~dP~Vi~nAl~sl~~i  193 (757)
T COG5096         162 YHELGLIDILKELVAD--SDPIVIANALASLAEI  193 (757)
T ss_pred             hhcccHHHHHHHHhhC--CCchHHHHHHHHHHHh
Confidence            3344566666665644  5778888887777776

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=89.59  E-value=9.3  Score=39.85  Aligned_cols=233  Identities=13%  Similarity=0.075  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHH-hcCCcH
Q 010019          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR-TGGGPK  220 (520)
Q Consensus       142 d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~-~~ggi~  220 (520)
                      .......++-+|..-|.   ++.+|..+..+|.+..+++.+.... ++......++..+..+..+... ..+. +....+
T Consensus        35 ~~s~Rr~sll~La~K~~---~~~Fr~~~ra~g~~~~l~~~l~~~~-~d~~~~l~~a~i~~~l~~d~~~-~~l~~~~~~~~  109 (361)
T PF07814_consen   35 SSSVRRSSLLELASKCA---DPQFRRQFRAHGLVKRLFKALSDAP-DDDILALATAAILYVLSRDGLN-MHLLLDRDSLR  109 (361)
T ss_pred             CccHHHHHHHHHHHHhC---CHHHHHHHHHcCcHHHHHHHhcccc-chHHHHHHHHHHHHHHccCCcc-hhhhhchhHHH
Confidence            34556778888888888   8999999999999999999885432 1222222223333334444322 2332 334455


Q ss_pred             HHHHHHh--cC---CC-------------------------------------ChHHHHHHHHHHHHHh-----------
Q 010019          221 LLVNILI--DG---NE-------------------------------------DPEILNSGFAVVAASA-----------  247 (520)
Q Consensus       221 ~Lv~lL~--~~---~~-------------------------------------~~~v~~~a~~~L~~~~-----------  247 (520)
                      .++++|.  ..   ..                                     ...-+..|+.++..+|           
T Consensus       110 ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~  189 (361)
T PF07814_consen  110 LLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLREAGDLSE  189 (361)
T ss_pred             HHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHhhcccchh
Confidence            5566555  10   00                                     0011123344444442           


Q ss_pred             ---cCChhhHHHHHhcCCHHHHHHHHhc----CC------h------HHHHHHHHHHHHhcCCCC-cchhhhhhchHHHH
Q 010019          248 ---TGNEVVKESYMELKIDELILEILSR----QR------N------DSIQSLYDAIRVLLTPDD-DQVVASQVYGYARR  307 (520)
Q Consensus       248 ---~~~e~nr~~i~~~g~i~~Lv~lL~~----~~------~------~~~~~a~~aL~~Ls~~dd-~~v~~~~a~~~a~~  307 (520)
                         ...+.-|+.+.+.|++..+++++..    ..      .      ..+..+.++|-+-+...+ +..       |  .
T Consensus       190 t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~-------~--l  260 (361)
T PF07814_consen  190 TSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQS-------Y--L  260 (361)
T ss_pred             hhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchH-------H--H
Confidence               0123346778888899999999862    10      1      122224455555443221 111       1  2


Q ss_pred             HH-HcCCHHHHHH-HHhcCCC--hhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHH---HHhc-------cCCCCcH
Q 010019          308 FA-KIGIARALVH-SLHAGLS--SPSLISASIALKAVAV-NDEICKSVAENGGIDALLR---CIDD-------SGLQGNK  372 (520)
Q Consensus       308 i~-~~g~l~~Lv~-lL~~~~~--~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~---lL~~-------~~~~~~~  372 (520)
                      +. ..+.++.+.. +++...+  ...+..++..|-||+. +++.|..+...+.+..+..   .+..       .++...-
T Consensus       261 ~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~  340 (361)
T PF07814_consen  261 LSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESSF  340 (361)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccccccccc
Confidence            22 2233333333 3332211  2335677888889984 5566777665543332221   1111       0111123


Q ss_pred             HHHHHHHHHHHHhhCC
Q 010019          373 TVARICCSLLSKLAGS  388 (520)
Q Consensus       373 ~v~~~al~aL~~La~~  388 (520)
                      ++..-++++|-||+..
T Consensus       341 D~~IL~Lg~LINL~E~  356 (361)
T PF07814_consen  341 DILILALGLLINLVEH  356 (361)
T ss_pred             hHHHHHHHhHHHheee
Confidence            5667788888888843

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.86  E-value=29  Score=39.07  Aligned_cols=106  Identities=16%  Similarity=0.107  Sum_probs=70.3

Q ss_pred             CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 010019          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV  252 (520)
Q Consensus       173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~  252 (520)
                      ++++.++.=+.   ..++.++.-|+.+++.+.-+.      +..-...++.+.++  .+++.+...+.-.+..   -+..
T Consensus        86 ~avnt~~kD~~---d~np~iR~lAlrtm~~l~v~~------i~ey~~~Pl~~~l~--d~~~yvRktaa~~vak---l~~~  151 (734)
T KOG1061|consen   86 LAVNTFLKDCE---DPNPLIRALALRTMGCLRVDK------ITEYLCDPLLKCLK--DDDPYVRKTAAVCVAK---LFDI  151 (734)
T ss_pred             hhhhhhhccCC---CCCHHHHHHHhhceeeEeehH------HHHHHHHHHHHhcc--CCChhHHHHHHHHHHH---hhcC
Confidence            34444443333   347777887888877764322      11223456677775  3456666655555544   3456


Q ss_pred             hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCC
Q 010019          253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD  292 (520)
Q Consensus       253 nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~d  292 (520)
                      +.+.+...|.++.|..++...+..++.+|.++|..+...+
T Consensus       152 ~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  152 DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH  191 (734)
T ss_pred             ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence            7788889999999999999656689999999999887654

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=88.53  E-value=1.1  Score=38.72  Aligned_cols=73  Identities=16%  Similarity=0.229  Sum_probs=57.1

Q ss_pred             CHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 010019          400 GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR  475 (520)
Q Consensus       400 ~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~  475 (520)
                      .+..|+++|.. +.++.+..-||-=|..++...|.-+..+-+.|+-+.++++|. | .+++|+++|..++.-+...
T Consensus        44 llk~L~~lL~~-s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~-h-~d~eVr~eAL~avQklm~~  116 (119)
T PF11698_consen   44 LLKKLIKLLDK-SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN-H-EDPEVRYEALLAVQKLMVN  116 (119)
T ss_dssp             HHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcc-CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc-C-CCHHHHHHHHHHHHHHHHh
Confidence            36688999953 347888888999999999888887777777888888888885 5 6899999999998877543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=88.40  E-value=4  Score=46.34  Aligned_cols=224  Identities=13%  Similarity=0.137  Sum_probs=134.3

Q ss_pred             cCChhhHHHHHhcCCHHHHHHHHhcCC------hHHHHHHHHHHHHhcCCCCcchhhhh-hchHHHHHHHcCCHHHHHHH
Q 010019          248 TGNEVVKESYMELKIDELILEILSRQR------NDSIQSLYDAIRVLLTPDDDQVVASQ-VYGYARRFAKIGIARALVHS  320 (520)
Q Consensus       248 ~~~e~nr~~i~~~g~i~~Lv~lL~~~~------~~~~~~a~~aL~~Ls~~dd~~v~~~~-a~~~a~~i~~~g~l~~Lv~l  320 (520)
                      .+-|..|..-+..|+.+..+.-++...      +......||-+-.+-.-   -+.|-+ .++-+.-+.+.+++..++++
T Consensus       533 Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~---gp~f~~~~w~~aenflkls~v~~~L~l  609 (1516)
T KOG1832|consen  533 IKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRL---GPTFVKAQWPAAENFLKLSGVVTMLEL  609 (1516)
T ss_pred             HHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHh---ChhhhhhcchHHHHHHHhHHHHHHHHH
Confidence            444555666566666666665444331      14555556555443321   122222 23456677788999999998


Q ss_pred             HhcCCC-------hhHHHHHHHHHHHhccChhhHHHHHhc--------CChHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010019          321 LHAGLS-------SPSLISASIALKAVAVNDEICKSVAEN--------GGIDALLRCIDDSGLQGNKTVARICCSLLSKL  385 (520)
Q Consensus       321 L~~~~~-------~~~~~~a~~aL~~La~~~e~~~~i~~~--------Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~L  385 (520)
                      ....++       .+.+..|+.+|.-+..-++...+++.+        .|+..++..-.......+++++..|+.+|-|+
T Consensus       610 ~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIinc  689 (1516)
T KOG1832|consen  610 CQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINC  689 (1516)
T ss_pred             HhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhhee
Confidence            875432       256677777777777777776666532        25666655433222223679999999999999


Q ss_pred             h-CCCchHHHHH-hcC---CHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhC--CCC
Q 010019          386 A-GSDSNKSAII-ENG---GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF--PNA  458 (520)
Q Consensus       386 a-~~~~~k~~Iv-~~g---~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~--~~~  458 (520)
                      . ..|+++..++ ..|   |-+..  .+.+.+ .....++.+.-.|+-.          ....||..|+.+|+-.  +.+
T Consensus       690 Vc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~-ks~~le~~l~~mw~~V----------r~ndGIkiLl~Ll~~k~P~t~  756 (1516)
T KOG1832|consen  690 VCPPPTTRPSTIVAVGSQSGDRRI--FLGAGT-KSAKLEQVLRQMWEAV----------RGNDGIKILLKLLQYKNPPTT  756 (1516)
T ss_pred             ecCCCCcchhhhhhccccCCCccc--cccCCC-chHHHHHHHHHHHHHH----------hcCccHHHHHHHHhccCCCCc
Confidence            6 5667776643 222   11111  222222 2234455555555433          3467999999998531  223


Q ss_pred             -HHHHHHHHHHHHHHhhhChhhHHHHHhCCH
Q 010019          459 -QQLQRSSCFMIRNLVARNPENRKLLLSNGV  488 (520)
Q Consensus       459 -~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~  488 (520)
                       ..+.+-||.+|.-| +|+++.++.+...-.
T Consensus       757 aD~IRalAc~~L~GL-aR~~tVrQIltKLpL  786 (1516)
T KOG1832|consen  757 ADCIRALACRVLLGL-ARDDTVRQILTKLPL  786 (1516)
T ss_pred             HHHHHHHHHHHHhcc-ccCcHHHHHHHhCcc
Confidence             34677799999999 789999888876533

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.27  E-value=52  Score=37.43  Aligned_cols=252  Identities=12%  Similarity=0.115  Sum_probs=123.3

Q ss_pred             CcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcC--CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHH
Q 010019          188 GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG--NEDPEILNSGFAVVAASATGNEVVKESYMELKIDEL  265 (520)
Q Consensus       188 ~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~--~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~  265 (520)
                      +++-+.++||.+|+++--     +.+     .|.++-.++.-  ...+-+...|+.+|-.+=+-..+.+..+     ++.
T Consensus       120 pN~LiRasALRvlSsIRv-----p~I-----aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~  184 (968)
T KOG1060|consen  120 PNQLIRASALRVLSSIRV-----PMI-----APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-----EEV  184 (968)
T ss_pred             CcHHHHHHHHHHHHhcch-----hhH-----HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-----HHH
Confidence            466778899999988631     111     23333333322  2235566667777766544445555544     334


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc---
Q 010019          266 ILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV---  342 (520)
Q Consensus       266 Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~---  342 (520)
                      +-.+|..++.-++-.|..+.-..|-+.   .         ..|.+  -...|..+|..- +.=.+.-+..+|.+-|.   
T Consensus       185 I~~LLaD~splVvgsAv~AF~evCPer---l---------dLIHk--nyrklC~ll~dv-deWgQvvlI~mL~RYAR~~l  249 (968)
T KOG1060|consen  185 IKKLLADRSPLVVGSAVMAFEEVCPER---L---------DLIHK--NYRKLCRLLPDV-DEWGQVVLINMLTRYARHQL  249 (968)
T ss_pred             HHHHhcCCCCcchhHHHHHHHHhchhH---H---------HHhhH--HHHHHHhhccch-hhhhHHHHHHHHHHHHHhcC
Confidence            555566655566677777777666432   1         12221  233333333221 11011112222222221   


Q ss_pred             -ChhhH---------------------HHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCC
Q 010019          343 -NDEIC---------------------KSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGG  400 (520)
Q Consensus       343 -~~e~~---------------------~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~  400 (520)
                       .+...                     .-++-.--++.|++..+-..-..|+.|+-+++.+.+.||-..++.      ..
T Consensus       250 ~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~------~i  323 (968)
T KOG1060|consen  250 PDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVT------KI  323 (968)
T ss_pred             CCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHH------HH
Confidence             11000                     001111113344433222111234689999999999998543221      23


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCH-----------------HHHH--------HHHhcCcHHHHHHHHHhC
Q 010019          401 MDKLIVVSARFSDDASVLQEVMSIITVLSLRSP-----------------ENAA--------RAMEAGSGDLAIQAMLKF  455 (520)
Q Consensus       401 l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~-----------------~~~~--------~i~~~G~i~~lv~~L~~~  455 (520)
                      +++|+++|+.+   +.+|.-.+..++.++...|                 ...+        .+..++-+..+++=++.+
T Consensus       324 ~kaLvrLLrs~---~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~Y  400 (968)
T KOG1060|consen  324 AKALVRLLRSN---REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTY  400 (968)
T ss_pred             HHHHHHHHhcC---CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Confidence            67899999854   4556666666666664433                 2222        233444455555544442


Q ss_pred             --CCCHHHHHHHHHHHHHHhhhChh
Q 010019          456 --PNAQQLQRSSCFMIRNLVARNPE  478 (520)
Q Consensus       456 --~~~~~vqk~A~~aL~nL~~~~~e  478 (520)
                        +.+..+...|.-||..++.+..+
T Consensus       401 I~s~d~~faa~aV~AiGrCA~~~~s  425 (968)
T KOG1060|consen  401 IKSSDRSFAAAAVKAIGRCASRIGS  425 (968)
T ss_pred             HhcCchhHHHHHHHHHHHHHHhhCc
Confidence              23334556666677766655443

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=87.40  E-value=3.6  Score=32.42  Aligned_cols=67  Identities=13%  Similarity=0.163  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010019          375 ARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG  443 (520)
Q Consensus       375 ~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G  443 (520)
                      ++.+++++++++.++..-..+-+.+.++.++++.+. ++...++--|..+|.-++ ++.+-+..+-+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~-s~v~siRGT~fy~Lglis-~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAEN-SPVLSIRGTCFYVLGLIS-STEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHh-CCccchHHHHHHHHHHHh-CCHHHHHHHHHcC
Confidence            578999999999988888888788999999998874 557888888888888777 4766666665555

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=87.10  E-value=3.8  Score=38.69  Aligned_cols=132  Identities=8%  Similarity=-0.081  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHhcCCCCcchhhhhhc-h----HHHHHH-HcCCHHHHHHHHhcCCC-----hhHHHHHHHHHHHhccCh
Q 010019          276 DSIQSLYDAIRVLLTPDDDQVVASQVY-G----YARRFA-KIGIARALVHSLHAGLS-----SPSLISASIALKAVAVND  344 (520)
Q Consensus       276 ~~~~~a~~aL~~Ls~~dd~~v~~~~a~-~----~a~~i~-~~g~l~~Lv~lL~~~~~-----~~~~~~a~~aL~~La~~~  344 (520)
                      .....+|.+|+||+..+.....+-+.. +    ..+... +...+..|++++..+.+     ..-....+..|.|++..+
T Consensus        10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~   89 (192)
T PF04063_consen   10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP   89 (192)
T ss_pred             chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence            334457888888887665422110000 0    000111 22467888888877321     234566788899999999


Q ss_pred             hhHHHHHhcC-ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHH
Q 010019          345 EICKSVAENG-GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVS  408 (520)
Q Consensus       345 e~~~~i~~~G-gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL  408 (520)
                      +-++.+.+.. +..++-+++.- .++.+..-..-++++|+|++...+.-..+.....+..|-.+|
T Consensus        90 ~gR~~~l~~~~~~~~l~kLl~f-t~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LL  153 (192)
T PF04063_consen   90 EGRQFFLDPQRYDGPLQKLLPF-TEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLL  153 (192)
T ss_pred             HHHHHHhCchhhhhHHHHHHHH-hccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHH
Confidence            9998888654 22234444332 222234555678999999998877777776644344333333

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PRK09169 hypothetical protein; Validated

Probab=86.46  E-value=1.1e+02  Score=39.20  Aligned_cols=262  Identities=15%  Similarity=0.142  Sum_probs=129.0

Q ss_pred             CCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcc
Q 010019          217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQ  295 (520)
Q Consensus       217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~  295 (520)
                      ..+..++..|++..++......+...-..++ .....+.. ++.-.+..++..|....+ ..-+.+...|..-...+..-
T Consensus       163 ~~v~~lLNalSKWP~~~~c~~aa~~lA~~la-~~~~l~~a-l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l  240 (2316)
T PRK09169        163 ISFALLLNALSKWPDNTDCQTAAEQLADRLA-SDSRLLQA-MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGL  240 (2316)
T ss_pred             HHHHHHHHHhccCCCchHHHHHHHHHHHHhc-cCHHHHHh-cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHH
Confidence            3566677777776666555544443333333 33333433 333456667777766543 44445555555444333210


Q ss_pred             hhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHh-ccChhhHHHHHhcCChHHHHHHHhccCCCCcHHH
Q 010019          296 VVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV-AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTV  374 (520)
Q Consensus       296 v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~L-a~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v  374 (520)
                      .          .-...-.+..+++.|.+.++.+....++.+|... +..+.-+.. .+.-+|...+..|++.++.   +.
T Consensus       241 ~----------~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~-~~~Q~vAN~LNALSKwp~~---~~  306 (2316)
T PRK09169        241 L----------QSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLA-LDPQGVANALNALSKWPDT---EA  306 (2316)
T ss_pred             H----------HhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhh-cCHHHHHHHHHHHHhCCCc---hH
Confidence            0          0111234666777777767655566666666543 333333333 4445566677777776554   33


Q ss_pred             HHHHHHHH-HHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHH
Q 010019          375 ARICCSLL-SKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAML  453 (520)
Q Consensus       375 ~~~al~aL-~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~  453 (520)
                      .+.++..| ..|+..+..... .+..+|.-.+..|.++.+.+. +..+..+|+.=..+++..++.+ ..-.+--.+.+|.
T Consensus       307 cr~aa~~LA~rL~~~~~l~~~-~~aQ~vAN~LNALSKWp~~~~-c~~Aa~~LA~rL~~~~~l~~~~-npQelANaLnALS  383 (2316)
T PRK09169        307 CRQAAEALAERLAQERGLLQA-MNAQAVANALNALSKWPDEEA-CRAAAEALAARLARDAGLRRAL-NAQELANALNALS  383 (2316)
T ss_pred             HHHHHHHHHHHHHhChhhhhh-CCHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHhChhhhhhC-CHHHHHHHHHHHH
Confidence            33333333 233333333332 233456666666766654333 3444444443222344433322 1112344455666


Q ss_pred             hCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC
Q 010019          454 KFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH  499 (520)
Q Consensus       454 ~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h  499 (520)
                      +.+.... .+.|+.+|.-=..+.+..+..|-..|+...|. ++.+-
T Consensus       384 Kwp~~~~-cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLn-ALsKW  427 (2316)
T PRK09169        384 KWPDEEA-CRAAAEALAARLARDAGLRAALNAQGVANALN-ALSKW  427 (2316)
T ss_pred             cCCCchH-HHHHHHHHHHHHHhchhhhhhcChHHHHHHHH-HHhcC
Confidence            6654433 44555444433344555566666666666664 33344

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.44  E-value=72  Score=37.15  Aligned_cols=118  Identities=16%  Similarity=0.119  Sum_probs=69.0

Q ss_pred             CCcHHHHHHHhcCC------CChHHHHHHHHHHHHHhc---CChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHH
Q 010019          217 GGPKLLVNILIDGN------EDPEILNSGFAVVAASAT---GNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRV  287 (520)
Q Consensus       217 ggi~~Lv~lL~~~~------~~~~v~~~a~~~L~~~~~---~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~  287 (520)
                      |.++.++++|.++.      .++....-|++.++++|.   +....+ ..++.=.+..+...+++...-++..|||++..
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~  488 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ  488 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence            45666777776432      244555667777777763   222111 12232234445555555443555669999999


Q ss_pred             hcCCCC-cchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhH
Q 010019          288 LLTPDD-DQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEIC  347 (520)
Q Consensus       288 Ls~~dd-~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~  347 (520)
                      .+.-|= ...          .+  ..+++...+.|...++-.+..+|+.||..+..+.+..
T Consensus       489 ~~~~df~d~~----------~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~  537 (1010)
T KOG1991|consen  489 FSSIDFKDPN----------NL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQA  537 (1010)
T ss_pred             HHhccCCChH----------HH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh
Confidence            984331 111          12  1356777777875445578999999999888665533

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.44  E-value=55  Score=35.81  Aligned_cols=195  Identities=13%  Similarity=0.154  Sum_probs=103.0

Q ss_pred             CCHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHH---HHHH
Q 010019          261 KIDELILEILSRQRNDSIQSLYDAIRVLLT-PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS---ASIA  336 (520)
Q Consensus       261 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~---a~~a  336 (520)
                      ..++.++.-+.+.....+.-|..-|..... .... .          ...-.|++..++.++.......+...   .-..
T Consensus       250 ~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~----------l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~  318 (675)
T KOG0212|consen  250 DMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-L----------LLYLSGILTAILPCLSDTEEMSIKEYAQMVNGL  318 (675)
T ss_pred             cchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-h----------hhhhhhhhhhcccCCCCCccccHHHHHHHHHHH
Confidence            367788887777555555555433433322 1111 0          12234566666666654322122211   1122


Q ss_pred             HHHhccChhhHHHHHhcC-ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCH
Q 010019          337 LKAVAVNDEICKSVAENG-GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDA  415 (520)
Q Consensus       337 L~~La~~~e~~~~i~~~G-gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~  415 (520)
                      |..+...+.-.+. ++-| .++.+...+...    ..+..-.++.-+..|-..-.++-........+.|+..|.  ..+.
T Consensus       319 l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~----~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLs--d~sd  391 (675)
T KOG0212|consen  319 LLKLVSSERLKEE-IDYGSIIEVLTKYLSDD----REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLS--DRSD  391 (675)
T ss_pred             HHHHHhhhhhccc-cchHHHHHHHHHHhhcc----hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhc--Cchh
Confidence            3334333333322 3332 233444444432    224555666666666544444444444455677777776  4567


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHH-HHHHHHHHHHHHhhh-ChhhH
Q 010019          416 SVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ-LQRSSCFMIRNLVAR-NPENR  480 (520)
Q Consensus       416 ~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~-vqk~A~~aL~nL~~~-~~e~~  480 (520)
                      .|...++..|+++|... +..      |..+.+..+|..+..+.. +...|...||.|+.. ++|..
T Consensus       392 ~vvl~~L~lla~i~~s~-~~~------~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~I  451 (675)
T KOG0212|consen  392 EVVLLALSLLASICSSS-NSP------NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERI  451 (675)
T ss_pred             HHHHHHHHHHHHHhcCc-ccc------cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHH
Confidence            89999999999999633 222      445666666655555554 444488888888754 56553

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=86.23  E-value=5.4  Score=33.26  Aligned_cols=87  Identities=10%  Similarity=0.002  Sum_probs=50.8

Q ss_pred             HHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh--cCcHHHHHHHHH
Q 010019          377 ICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME--AGSGDLAIQAML  453 (520)
Q Consensus       377 ~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~--~G~i~~lv~~L~  453 (520)
                      .++.+|+..+. -+..-....+ -.+++++..+.  ..+..|+..||.+|.|++..   .+..++.  ....+.+.+++.
T Consensus         5 ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~--D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~   78 (97)
T PF12755_consen    5 GGLIGLAAVAIALGKDISKYLD-EILPPVLKCFD--DQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSA   78 (97)
T ss_pred             HHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc
Confidence            45555666552 2222222222 35788888887  67899999999999999852   2223322  234555566554


Q ss_pred             hCCCCHHHHHHHHHHHHHH
Q 010019          454 KFPNAQQLQRSSCFMIRNL  472 (520)
Q Consensus       454 ~~~~~~~vqk~A~~aL~nL  472 (520)
                      .  .++.|+ +++..|-++
T Consensus        79 D--~d~~Vr-~~a~~Ld~l   94 (97)
T PF12755_consen   79 D--PDENVR-SAAELLDRL   94 (97)
T ss_pred             C--CchhHH-HHHHHHHHH
Confidence            3  456665 444555444

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=85.74  E-value=18  Score=40.11  Aligned_cols=140  Identities=11%  Similarity=0.124  Sum_probs=78.5

Q ss_pred             HHHHHHHHhcCC---ChhHHHHHHHHHHHhc----cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010019          314 ARALVHSLHAGL---SSPSLISASIALKAVA----VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA  386 (520)
Q Consensus       314 l~~Lv~lL~~~~---~~~~~~~a~~aL~~La----~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La  386 (520)
                      +..+.++++...   .+.+...++.+++.|.    .+.+.|...+-...++.+.+.|.......+.+-....+.+|+|+.
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g  474 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG  474 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence            566666666422   2334455556666554    333333211112345666666654322122244566777777765


Q ss_pred             CCCchHHHHHhcCCHHHHHHHHh-ccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHH
Q 010019          387 GSDSNKSAIIENGGMDKLIVVSA-RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSS  465 (520)
Q Consensus       387 ~~~~~k~~Iv~~g~l~~Lv~lL~-~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A  465 (520)
                      ...          .++.+...+. ....++.++..|+++|..++...|+..+        +.++.++.+...++++...|
T Consensus       475 ~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA  536 (574)
T smart00638      475 HPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRMAA  536 (574)
T ss_pred             Chh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHHHH
Confidence            321          2233333333 2334678999999999999866665443        45666777777788887777


Q ss_pred             HHHHHH
Q 010019          466 CFMIRN  471 (520)
Q Consensus       466 ~~aL~n  471 (520)
                      +.+|-.
T Consensus       537 ~~~lm~  542 (574)
T smart00638      537 VLVLME  542 (574)
T ss_pred             HHHHHh
Confidence            666644

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=85.21  E-value=82  Score=36.69  Aligned_cols=309  Identities=13%  Similarity=0.058  Sum_probs=154.6

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhc--C-
Q 010019          141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG--G-  217 (520)
Q Consensus       141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~--g-  217 (520)
                      +|...-..|+.-|.-+..   ..+......+.-.++.++.+++|...     +..|+..+-.+      .++++..  . 
T Consensus       705 sdlhvt~~a~~~L~tl~~---~~ps~l~~~~~~iL~~ii~ll~Spll-----qg~al~~~l~~------f~alV~t~~~~  770 (1233)
T KOG1824|consen  705 SDLHVTQLAVAFLTTLAI---IQPSSLLKISNPILDEIIRLLRSPLL-----QGGALSALLLF------FQALVITKEPD  770 (1233)
T ss_pred             HHHHHHHHHHHHHHHHHh---cccHHHHHHhhhhHHHHHHHhhCccc-----cchHHHHHHHH------HHHHHhcCCCC
Confidence            555555555555555554   45555556667788889999987532     22222222111      1122211  1 


Q ss_pred             -CcHHHHHHHhcCCCChH---HH-------HHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHH
Q 010019          218 -GPKLLVNILIDGNEDPE---IL-------NSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAI  285 (520)
Q Consensus       218 -gi~~Lv~lL~~~~~~~~---v~-------~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL  285 (520)
                       ....++.++...-.+..   +-       ..++.+|...|.  +.++..     +...+.+++..+.+ ....-|.-.|
T Consensus       771 l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~--~~s~s~-----a~kl~~~~~s~~s~~~ikvfa~Lsl  843 (1233)
T KOG1824|consen  771 LDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACP--QKSKSL-----ATKLIQDLQSPKSSDSIKVFALLSL  843 (1233)
T ss_pred             ccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcc--ccchhH-----HHHHHHHHhCCCCchhHHHHHHhhh
Confidence             14556666654322211   11       122233333332  222221     12334444444433 3333455555


Q ss_pred             HHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhc
Q 010019          286 RVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD  365 (520)
Q Consensus       286 ~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~  365 (520)
                      ..+-...+...             ..+.-..+++.+.+ +..+++..|..||+++++.+-.       .-+|.+++....
T Consensus       844 GElgr~~~~s~-------------~~e~~~~iieaf~s-p~edvksAAs~ALGsl~vgnl~-------~yLpfil~qi~s  902 (1233)
T KOG1824|consen  844 GELGRRKDLSP-------------QNELKDTIIEAFNS-PSEDVKSAASYALGSLAVGNLP-------KYLPFILEQIES  902 (1233)
T ss_pred             hhhccCCCCCc-------------chhhHHHHHHHcCC-ChHHHHHHHHHHhhhhhcCchH-------hHHHHHHHHHhc
Confidence            55554433221             12223345555554 4578999999999999964321       124666776665


Q ss_pred             cCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010019          366 SGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD--ASVLQEVMSIITVLSLRSPENAARAMEAG  443 (520)
Q Consensus       366 ~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~--~~v~~~a~~aL~nLa~~~~~~~~~i~~~G  443 (520)
                      .+..  ..+.-.++.-.-.=++.+      .-...++.+..+|..|.++  ...+.-...+|.-|+.-+|+.        
T Consensus       903 qpk~--QyLLLhSlkevi~~~svd------~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes--------  966 (1233)
T KOG1824|consen  903 QPKR--QYLLLHSLKEVIVSASVD------GLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES--------  966 (1233)
T ss_pred             chHh--HHHHHHHHHHHHHHhccc------hhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------
Confidence            4332  244444443221111222      1124577888888777542  334444556677777767753        


Q ss_pred             cHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcchHHHHHHH
Q 010019          444 SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDA  509 (520)
Q Consensus       444 ~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~~~~a~aA  509 (520)
                      ..+.+-..|..  +.+...--+..+++-..+..|.-.+.++...+.+.+.....-.....++|-.+
T Consensus       967 LlpkL~~~~~S--~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv 1030 (1233)
T KOG1824|consen  967 LLPKLKLLLRS--EASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVV 1030 (1233)
T ss_pred             HHHHHHHHhcC--CCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            34555555543  34444455666666666666666677777666666644433333445554333

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=85.20  E-value=14  Score=34.20  Aligned_cols=97  Identities=13%  Similarity=0.128  Sum_probs=64.7

Q ss_pred             HHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcc------cCcHHHHHHHHHHHHHhhcccccchhHHh-cCCcH
Q 010019          148 GLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR------CGSKRVLDSCLKTMALLVHDVQSTETFRT-GGGPK  220 (520)
Q Consensus       148 ~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~------~~~~~~~~~al~~La~l~~~~~~~~~i~~-~ggi~  220 (520)
                      +.+..|+..+.. +...+...+++.||+..|+.+|....      ..+...+..++..+-++.+...+...++. .+++.
T Consensus        83 ~~L~~L~v~Lrt-~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~  161 (187)
T PF06371_consen   83 KILKSLRVSLRT-NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVN  161 (187)
T ss_dssp             HHHHHHHHHHHH-S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHH
T ss_pred             HHHHHHHHHhcc-CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHH
Confidence            556666665553 35667788889999999999986432      12335556666666666655555566665 46788


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHh
Q 010019          221 LLVNILIDGNEDPEILNSGFAVVAASA  247 (520)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~  247 (520)
                      .++..|.  +.+..+...++..|+.+|
T Consensus       162 ~i~~~L~--s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  162 LIALSLD--SPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHHT----TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHC--CCCHHHHHHHHHHHHHHH
Confidence            8888886  456788888888888776

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=85.05  E-value=1.9  Score=27.68  Aligned_cols=28  Identities=11%  Similarity=0.131  Sum_probs=24.3

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019          401 MDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (520)
Q Consensus       401 l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~  430 (520)
                      +|.++++++  .+++.|+..|+.+|..|+.
T Consensus         2 lp~l~~~l~--D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLN--DPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT---SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcC--CCCHHHHHHHHHHHHHHHh
Confidence            688999998  7799999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.72  E-value=77  Score=35.95  Aligned_cols=104  Identities=20%  Similarity=0.198  Sum_probs=59.3

Q ss_pred             CCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCch
Q 010019          312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSN  391 (520)
Q Consensus       312 g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~  391 (520)
                      ..|..+..+|.+. ++.+.-+++++|-.|+.++...+..+     ..+++++.+-++.   .+.--.+--|..|.  . +
T Consensus       243 ~~i~~i~~lL~st-ssaV~fEaa~tlv~lS~~p~alk~Aa-----~~~i~l~~kesdn---nvklIvldrl~~l~--~-~  310 (948)
T KOG1058|consen  243 RYIRCIYNLLSST-SSAVIFEAAGTLVTLSNDPTALKAAA-----STYIDLLVKESDN---NVKLIVLDRLSELK--A-L  310 (948)
T ss_pred             HHHHHHHHHHhcC-CchhhhhhcceEEEccCCHHHHHHHH-----HHHHHHHHhccCc---chhhhhHHHHHHHh--h-h
Confidence            4577888888765 56677788888888877666544433     4566666554443   22222333333333  1 1


Q ss_pred             HHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019          392 KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (520)
Q Consensus       392 k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~  430 (520)
                      -..|.+ |-+--++.+|.  +.+-+|++.++....-|+.
T Consensus       311 ~~~il~-~l~mDvLrvLs--s~dldvr~Ktldi~ldLvs  346 (948)
T KOG1058|consen  311 HEKILQ-GLIMDVLRVLS--SPDLDVRSKTLDIALDLVS  346 (948)
T ss_pred             hHHHHH-HHHHHHHHHcC--cccccHHHHHHHHHHhhhh
Confidence            122322 34445556665  5567777777777666653

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.50  E-value=96  Score=36.88  Aligned_cols=240  Identities=13%  Similarity=0.170  Sum_probs=127.7

Q ss_pred             CCChHHHHHHHHHHHHHhcCChhhHHHHHhc---CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHH
Q 010019          230 NEDPEILNSGFAVVAASATGNEVVKESYMEL---KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYAR  306 (520)
Q Consensus       230 ~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~---g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~  306 (520)
                      +.+..+|..+.+.|..++.. +.. +.+...   -+-..|.+.+++.....+...+.+|..|-..-+        .+|..
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~-~s~-~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~--------~e~~~  734 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSS-PSG-EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS--------AEHCD  734 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcC-Cch-hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc--------HHHHH
Confidence            34678888999999888765 222 122211   122344444444444666666666665543211        12222


Q ss_pred             HHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcC------ChHHHHHHHhccCCCCcHHHHHHH--
Q 010019          307 RFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG------GIDALLRCIDDSGLQGNKTVARIC--  378 (520)
Q Consensus       307 ~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~G------gv~~Ll~lL~~~~~~~~~~v~~~a--  378 (520)
                      .+.+  .|+-++=.++.. +....+.+..+|..++.    .+...+.|      .|...+..+..+. .++ .....+  
T Consensus       735 ~i~k--~I~EvIL~~Ke~-n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl-~gd-~~~~~as~  805 (1176)
T KOG1248|consen  735 LIPK--LIPEVILSLKEV-NVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGL-VGD-STRVVASD  805 (1176)
T ss_pred             HHHH--HHHHHHHhcccc-cHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhh-ccc-HHHHHHHH
Confidence            3333  244444444443 44556777777777763    23334444      4455555555431 111 122222  


Q ss_pred             HHHHHHhhCCCchHHHHHhcC----CHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHh
Q 010019          379 CSLLSKLAGSDSNKSAIIENG----GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK  454 (520)
Q Consensus       379 l~aL~~La~~~~~k~~Iv~~g----~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~  454 (520)
                      +-++..+...   -..+.+.+    .+..+...|.  ++++.+.+.|++.+..++..-|+-+-.-...-.++.+..+...
T Consensus       806 Ivai~~il~e---~~~~ld~~~l~~li~~V~~~L~--s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d  880 (1176)
T KOG1248|consen  806 IVAITHILQE---FKNILDDETLEKLISMVCLYLA--SNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHD  880 (1176)
T ss_pred             HHHHHHHHHH---HhccccHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHh
Confidence            3333333311   11122223    3444444555  7789999999999999998888766554444467777776654


Q ss_pred             CCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHhCCHHHHHHHH
Q 010019          455 FPNAQQLQRSSCFMIRNLVAR-NPENRKLLLSNGVEKLIRQA  495 (520)
Q Consensus       455 ~~~~~~vqk~A~~aL~nL~~~-~~e~~~~l~~~G~~~lL~~~  495 (520)
                      |  ...+.++.-.++--|+.+ ..+..+.+..+.-..+|..+
T Consensus       881 ~--k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nI  920 (1176)
T KOG1248|consen  881 H--KIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNI  920 (1176)
T ss_pred             h--hHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHH
Confidence            4  456667777777777653 45555666654334444333

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=84.40  E-value=58  Score=34.28  Aligned_cols=240  Identities=17%  Similarity=0.120  Sum_probs=119.2

Q ss_pred             cHHHHHHHHHHHHHhhccc-ccchhHHhcCCcHHHHHHHhcCC---CChHHHHHHHHHHHHHhcCChhhHHHHH-hcCCH
Q 010019          189 SKRVLDSCLKTMALLVHDV-QSTETFRTGGGPKLLVNILIDGN---EDPEILNSGFAVVAASATGNEVVKESYM-ELKID  263 (520)
Q Consensus       189 ~~~~~~~al~~La~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~---~~~~v~~~a~~~L~~~~~~~e~nr~~i~-~~g~i  263 (520)
                      +..+...+++.|+++.-.. ..+..+.+......+++.+...-   --.++...-++.|.-+..-+...|..++ +.+|+
T Consensus       110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl  189 (532)
T KOG4464|consen  110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL  189 (532)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence            4456666777777765332 23444445444444444432111   1123333444555444444455666655 77999


Q ss_pred             HHHHHHHhcC----C-----h------HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHH-------
Q 010019          264 ELILEILSRQ----R-----N------DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSL-------  321 (520)
Q Consensus       264 ~~Lv~lL~~~----~-----~------~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL-------  321 (520)
                      +.+...|...    +     .      ...-.+..+++|++.+.+-.+....+.. ++.+.  +.+..++..+       
T Consensus       190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~-~r~l~--~llr~cl~~vT~~~~~~  266 (532)
T KOG4464|consen  190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQ-ARHLT--ILLRHCLLIVTLRDSTE  266 (532)
T ss_pred             HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHH-HHHHH--HHHHHHHhhccccchHH
Confidence            9999999753    1     1      1112255677888876554332111110 11111  1122222111       


Q ss_pred             --hcCCC---hhHHHHHHHHHHHhccChhhHHH-HHhcCC--hHHHHHHHhccC-----CCCcHHHHHHHHHHHHHhhCC
Q 010019          322 --HAGLS---SPSLISASIALKAVAVNDEICKS-VAENGG--IDALLRCIDDSG-----LQGNKTVARICCSLLSKLAGS  388 (520)
Q Consensus       322 --~~~~~---~~~~~~a~~aL~~La~~~e~~~~-i~~~Gg--v~~Ll~lL~~~~-----~~~~~~v~~~al~aL~~La~~  388 (520)
                        .++.-   +.+....+.++...-. .|+|.+ +..-.|  .+++..+|....     ++...+++.+.+.+|..+|..
T Consensus       267 elhshav~~L~nv~~k~~~~~~~~~p-~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~  345 (532)
T KOG4464|consen  267 ELHSHAVNLLDNVPEKCLDVLAGAKP-HECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARS  345 (532)
T ss_pred             HHhhccCCccCCchhhhhhcccCCCC-cchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhh
Confidence              11110   1222333433332221 233322 222222  345555554321     111247888999999999988


Q ss_pred             CchHHHHHhcCCHHHHHHHHhccCC---------------CHHHHHHHHHHHHHHhcCC
Q 010019          389 DSNKSAIIENGGMDKLIVVSARFSD---------------DASVLQEVMSIITVLSLRS  432 (520)
Q Consensus       389 ~~~k~~Iv~~g~l~~Lv~lL~~~~~---------------~~~v~~~a~~aL~nLa~~~  432 (520)
                      +.+.........+|+|.++=++..-               +..++.-+.-.|..||.++
T Consensus       346 ~R~~Rkylr~qVLPPLrDV~~RPEvg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKes  404 (532)
T KOG4464|consen  346 HRVMRKYLRQQVLPPLRDVSQRPEVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCKES  404 (532)
T ss_pred             hHHHHHHHHHhcCCchhhhhcCcchhHHHHHhhHhheeccchhhhhhhHHHHHHHhhcc
Confidence            8877777777899988876554322               2345555566666666543

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=83.36  E-value=70  Score=34.41  Aligned_cols=122  Identities=11%  Similarity=0.102  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHhcCC---hhhHHHHHhcCCHHHHHHHHhcCC---h---HHHHH-HHHHHHHhcCCCCcchhhhhhch
Q 010019          234 EILNSGFAVVAASATGN---EVVKESYMELKIDELILEILSRQR---N---DSIQS-LYDAIRVLLTPDDDQVVASQVYG  303 (520)
Q Consensus       234 ~v~~~a~~~L~~~~~~~---e~nr~~i~~~g~i~~Lv~lL~~~~---~---~~~~~-a~~aL~~Ls~~dd~~v~~~~a~~  303 (520)
                      +.+..|+-.+...+...   ..+|..+.++=|.+-+=++|++.+   +   .+.+. +..+|...|.+.+--.     | 
T Consensus        26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAs-----h-   99 (698)
T KOG2611|consen   26 EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELAS-----H-   99 (698)
T ss_pred             HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhcc-----C-
Confidence            34446666666666432   336778888888888889998752   1   44444 6777888887664311     1 


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCChh------HHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhc
Q 010019          304 YARRFAKIGIARALVHSLHAGLSSP------SLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD  365 (520)
Q Consensus       304 ~a~~i~~~g~l~~Lv~lL~~~~~~~------~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~  365 (520)
                        ++++  +.||.|.+.+..+.|++      ++.++...|..++..+.--+.++..||++.+-++-..
T Consensus       100 --~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~  163 (698)
T KOG2611|consen  100 --EEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL  163 (698)
T ss_pred             --HHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC
Confidence              2444  35999999999876554      7889999999999877667788899999998876543

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.90  E-value=21  Score=39.53  Aligned_cols=196  Identities=15%  Similarity=0.141  Sum_probs=113.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHH---HhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHH
Q 010019          263 DELILEILSRQRNDSIQSLYDAIR---VLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKA  339 (520)
Q Consensus       263 i~~Lv~lL~~~~~~~~~~a~~aL~---~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~  339 (520)
                      ....+++|+....++..+|..+++   |++-....+.     .+. +.+. ..++..+...++... -.+...|+.+|+.
T Consensus       236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e-----~~e-~kl~-D~aF~~vC~~v~D~s-l~VRV~AaK~lG~  307 (823)
T KOG2259|consen  236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE-----SEE-EKLK-DAAFSSVCRAVRDRS-LSVRVEAAKALGE  307 (823)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch-----hhh-hhhH-HHHHHHHHHHHhcCc-eeeeehHHHHhch
Confidence            456677777655566666655444   4442111110     011 1222 235667777777643 3456778888888


Q ss_pred             hc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHh---------h-----CCCchHHHHHhcCCHHHH
Q 010019          340 VA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL---------A-----GSDSNKSAIIENGGMDKL  404 (520)
Q Consensus       340 La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~L---------a-----~~~~~k~~Iv~~g~l~~L  404 (520)
                      +- +.+++..+..+..+..    =++...     .-.+..-....+.         +     ..++.-..|+..|+.-.+
T Consensus       308 ~~~vSee~i~QTLdKKlms----~lRRkr-----~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~  378 (823)
T KOG2259|consen  308 FEQVSEEIIQQTLDKKLMS----RLRRKR-----TAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGAL  378 (823)
T ss_pred             HHHhHHHHHHHHHHHHHhh----hhhhhh-----hcccchHHHHhcCCcccCccccccCchhhcccccccccccccccee
Confidence            76 5677766666543222    121100     0111111222222         0     123344558888999999


Q ss_pred             HHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh---ChhhHH
Q 010019          405 IVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR---NPENRK  481 (520)
Q Consensus       405 v~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~---~~e~~~  481 (520)
                      |.-|.  .+--+|+++|+..++.|+...|.-+...     ++.|+..+..  ....|.-+|..+|..++.+   +.++..
T Consensus       379 VhGlE--DEf~EVR~AAV~Sl~~La~ssP~FA~~a-----ldfLvDMfND--E~~~VRL~ai~aL~~Is~~l~i~eeql~  449 (823)
T KOG2259|consen  379 VHGLE--DEFYEVRRAAVASLCSLATSSPGFAVRA-----LDFLVDMFND--EIEVVRLKAIFALTMISVHLAIREEQLR  449 (823)
T ss_pred             eeech--HHHHHHHHHHHHHHHHHHcCCCCcHHHH-----HHHHHHHhcc--HHHHHHHHHHHHHHHHHHHheecHHHHH
Confidence            99887  4456899999999999999888766543     4677776633  3456777788888888643   455555


Q ss_pred             HHH
Q 010019          482 LLL  484 (520)
Q Consensus       482 ~l~  484 (520)
                      .|+
T Consensus       450 ~il  452 (823)
T KOG2259|consen  450 QIL  452 (823)
T ss_pred             HHH
Confidence            554

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=82.43  E-value=17  Score=41.96  Aligned_cols=103  Identities=13%  Similarity=0.121  Sum_probs=54.1

Q ss_pred             CCHHHHHHHHhcCCh---HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHH
Q 010019          261 KIDELILEILSRQRN---DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIAL  337 (520)
Q Consensus       261 g~i~~Lv~lL~~~~~---~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL  337 (520)
                      ++.+.|++-+.....   +....++.++.+-+..                   ...++.+...++.. ++.....+...+
T Consensus       336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------------------~~~~~~I~e~lk~k-np~~k~~~~~~l  395 (815)
T KOG1820|consen  336 NVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------------------SKMSEAILEALKGK-NPQIKGECLLLL  395 (815)
T ss_pred             hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------------------HHHHHHHHHHhcCC-ChhhHHHHHHHH
Confidence            455666666654322   5555666666662211                   12356777777754 454544433333


Q ss_pred             HHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010019          338 KAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA  386 (520)
Q Consensus       338 ~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La  386 (520)
                      .... ..+.   ..+..+.+..++..+-.+..+.+.+|..++..+++.+.
T Consensus       396 ~r~~~~~~~---~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~  442 (815)
T KOG1820|consen  396 DRKLRKLGP---KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM  442 (815)
T ss_pred             HHHHhhcCC---cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence            3322 2221   23344445555555544443345688888888887765

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=81.98  E-value=13  Score=33.92  Aligned_cols=147  Identities=14%  Similarity=0.161  Sum_probs=84.1

Q ss_pred             HHHHHHHHhc-CCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCch
Q 010019          314 ARALVHSLHA-GLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSN  391 (520)
Q Consensus       314 l~~Lv~lL~~-~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~  391 (520)
                      ++.++..|.. ...+++...+..++..+-  +..++...+ -.-+.+-..+.....    +-...++.+|..|= +.++.
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~----d~~i~~~~~l~~lfp~~~dv   77 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEM----DSLIIAFSALTALFPGPPDV   77 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHC----CHHHHHHHHHHHHCTTTHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccc----hhHHHHHHHHHHHhCCCHHH
Confidence            4455555553 223556667777776663  222222221 111333444443222    23345666666664 66777


Q ss_pred             HHHHH-hcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 010019          392 KSAII-ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ-LQRSSCFMI  469 (520)
Q Consensus       392 k~~Iv-~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~-vqk~A~~aL  469 (520)
                      ...+. ..|.++.++.++.+++++..++..++.+|..=|. + +.++..+...+.+.|-+.++.. .+.. ++--|+..|
T Consensus        78 ~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d-~~~r~~I~~~~~~~L~~~~~~~-~~~~~ir~~A~v~L  154 (157)
T PF11701_consen   78 GSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-D-KSCRTFISKNYVSWLKELYKNS-KDDSEIRVLAAVGL  154 (157)
T ss_dssp             HHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-S-HHHHHCCHHHCHHHHHHHTTTC-C-HH-CHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-c-HHHHHHHHHHHHHHHHHHHccc-cchHHHHHHHHHHH
Confidence            77764 5566788888888777889999999999987664 4 4555555556778888877544 3333 555555544


Q ss_pred             H
Q 010019          470 R  470 (520)
Q Consensus       470 ~  470 (520)
                      .
T Consensus       155 ~  155 (157)
T PF11701_consen  155 C  155 (157)
T ss_dssp             H
T ss_pred             h
Confidence            3

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=81.57  E-value=18  Score=35.78  Aligned_cols=159  Identities=11%  Similarity=0.100  Sum_probs=86.5

Q ss_pred             ChhhHHHHHhcC--CHHHHHHHHhcCC----hHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH-cC-CHHHHHHHH
Q 010019          250 NEVVKESYMELK--IDELILEILSRQR----NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK-IG-IARALVHSL  321 (520)
Q Consensus       250 ~e~nr~~i~~~g--~i~~Lv~lL~~~~----~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~-~g-~l~~Lv~lL  321 (520)
                      ++..-..+...+  +...+..++....    ...+.-+++++.|+-.....+.          .+.. .+ .+...+..+
T Consensus        93 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~----------~~~~~~~~~i~~~~~~~  162 (268)
T PF08324_consen   93 HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQ----------LLLSHFDSSILELLSSL  162 (268)
T ss_dssp             CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHH----------HHHCTHHTCHHHHCHCC
T ss_pred             CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHH----------HHHhcccchHHHHHHHH
Confidence            444434443332  3455566665542    2555558999999988765543          3332 12 222332222


Q ss_pred             hcCC---ChhHHHHHHHHHHHhccChhhHHHHHhcC---ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHH
Q 010019          322 HAGL---SSPSLISASIALKAVAVNDEICKSVAENG---GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAI  395 (520)
Q Consensus       322 ~~~~---~~~~~~~a~~aL~~La~~~e~~~~i~~~G---gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~I  395 (520)
                      ....   +..++..++..+.|+++.--.... .+..   .+..+++.+..  ...+.+.+..++-+|++|...+......
T Consensus       163 ~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~-~~~~~~~ll~~i~~~~~~--~~~d~Ea~~R~LvAlGtL~~~~~~~~~~  239 (268)
T PF08324_consen  163 LSSLLDSNKNVRIALATLLLNLSVLLHKNRS-DEEWQSELLSSIIEVLSR--EESDEEALYRLLVALGTLLSSSDSAKQL  239 (268)
T ss_dssp             CTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS--CCHHHHHHHHHHHHCHC--CHTSHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             hhccccccHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcc--ccCCHHHHHHHHHHHHHHhccChhHHHH
Confidence            2221   356777888888999842111100 1111   12344443222  2234699999999999999777766666


Q ss_pred             HhcCCHHHHHHHHhccCCCHHHHHHH
Q 010019          396 IENGGMDKLIVVSARFSDDASVLQEV  421 (520)
Q Consensus       396 v~~g~l~~Lv~lL~~~~~~~~v~~~a  421 (520)
                      .+.=++...+........++.+++-+
T Consensus       240 ~~~l~~~~~~~~~~~~~~e~ri~~v~  265 (268)
T PF08324_consen  240 AKSLDVKSVLSKKANKSKEPRIKEVA  265 (268)
T ss_dssp             CCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHcChHHHHHHHHhcccchHHHHHh
Confidence            66444555555555456677776543

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=81.44  E-value=14  Score=30.78  Aligned_cols=74  Identities=5%  Similarity=0.084  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhC--CHHHHHHHH
Q 010019          418 LQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSN--GVEKLIRQA  495 (520)
Q Consensus       418 ~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~--G~~~lL~~~  495 (520)
                      ++.++.+|+..+..-+.......+ -.+++++..+..  .++.|...||.+|.|++..   .+..++..  .+.+.|.+.
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D--~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl   76 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDD--QDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKL   76 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            456777787776655555444433 367888888854  6899999999999999632   22334432  455555554


Q ss_pred             HH
Q 010019          496 KE  497 (520)
Q Consensus       496 ~~  497 (520)
                      ..
T Consensus        77 ~~   78 (97)
T PF12755_consen   77 SA   78 (97)
T ss_pred             Hc
Confidence            43

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=80.69  E-value=63  Score=32.07  Aligned_cols=180  Identities=14%  Similarity=0.103  Sum_probs=91.1

Q ss_pred             hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCC--
Q 010019          215 TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD--  292 (520)
Q Consensus       215 ~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~d--  292 (520)
                      ....++.++..|...++.+-+...|..+++.+.  .+.         ..+.|-+..+....++....-.+|..+--.+  
T Consensus        65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~--~~~---------~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~  133 (289)
T KOG0567|consen   65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--DPE---------SLEILTKYIKDPCKEVRETCELAIKRLEWKDII  133 (289)
T ss_pred             cchhhHHHHHHhcccccchHHHHHHHHHHHhhc--chh---------hHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence            345789999999877777777667777776643  221         2233333332211133232333333332111  


Q ss_pred             ---CcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCC
Q 010019          293 ---DDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQ  369 (520)
Q Consensus       293 ---d~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~  369 (520)
                         .+..+|.+++.-..  ...+-+..|-..|...+.+..-+.  .++++|          .+.||=..+..+...... 
T Consensus       134 ~~~~~~~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry--~amF~L----------Rn~g~EeaI~al~~~l~~-  198 (289)
T KOG0567|consen  134 DKIANSSPYISVDPAPP--ANLSSVHELRAELLDETKPLFERY--RAMFYL----------RNIGTEEAINALIDGLAD-  198 (289)
T ss_pred             ccccccCccccCCCCCc--cccccHHHHHHHHHhcchhHHHHH--hhhhHh----------hccCcHHHHHHHHHhccc-
Confidence               11222322222111  011223333333333222212111  333333          233443333333332222 


Q ss_pred             CcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019          370 GNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (520)
Q Consensus       370 ~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~  430 (520)
                      +++-.+..+..+|+.|-+.          -++|.|.+.|..-..+|-|+-.|+-+|..++.
T Consensus       199 ~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~  249 (289)
T KOG0567|consen  199 DSALFRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD  249 (289)
T ss_pred             chHHHHHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC
Confidence            2456778888888876432          35788888888777789999999999998884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	520
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-20
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-11
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-11
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-08
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-17
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-13
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-08
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-16
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-12
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-11
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	7e-15
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-09
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-05
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	7e-12
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-11
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-11
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-10
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-08
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-10
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-05
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-09
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	5e-08
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-08
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-08
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	6e-05
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-08
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	7e-06
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-08
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-06
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-04
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	8e-04
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-06
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-06
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	7e-06

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 92.3 bits (229), Expect = 6e-20
 Identities = 60/365 (16%), Positives = 131/365 (35%), Gaps = 26/365 (7%)

Query: 161 EGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPK 220
           + +   A+      V  +                    T+  L H  +        GG  
Sbjct: 44  KEASRHAIMRSPQMVSAIVRTM--QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIP 101

Query: 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS 280
            LV +L  G+    +L      +       E  K +       + ++ +L++     +  
Sbjct: 102 ALVKML--GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 159

Query: 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340
             D +++L   + +  +              G  +ALV+ +        L + S  LK +
Sbjct: 160 TTDCLQILAYGNQESKLI---------ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 210

Query: 341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGG 400
           +V      ++ E GG+ AL   + D     ++ + + C   L  L  SD+        G 
Sbjct: 211 SVCSSNKPAIVEAGGMQALGLHLTD----PSQRLVQNCLWTLRNL--SDAATKQEGMEGL 264

Query: 401 MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ 460
           +  L+ +    SDD +V+     I++ L+  + +N     + G  +  ++ +L+  + + 
Sbjct: 265 LGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 322

Query: 461 LQRSSCFMIRNLVARNPENRK----LLLSNGVEKLIRQAK-ENHEICKDAATDALRDLGL 515
           +   +   +R+L +R+ E       + L  G+  +++     +H     A    +R+L L
Sbjct: 323 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382

Query: 516 DDYNK 520
              N 
Sbjct: 383 CPANH 387

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 64.6 bits (157), Expect = 4e-11
 Identities = 29/180 (16%), Positives = 70/180 (38%), Gaps = 15/180 (8%)

Query: 342 VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGM 401
           +N +   +      I  L + ++D     ++ V      ++ +L+  ++++ AI+ +  M
Sbjct: 3   INYQD-DAELATRAIPELTKLLND----EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 57

Query: 402 DKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA---MLKFPNA 458
              IV + + ++D    +     +  LS    E      ++G     I A   ML  P  
Sbjct: 58  VSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSG----GIPALVKMLGSPV- 111

Query: 459 QQLQRSSCFMIRNLVARNPENRKLLL-SNGVEKLIRQAKENHEICKDAATDALRDLGLDD 517
             +   +   + NL+      +  +  + G++K++    + +       TD L+ L   +
Sbjct: 112 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 64.2 bits (156), Expect = 5e-11
 Identities = 60/390 (15%), Positives = 131/390 (33%), Gaps = 57/390 (14%)

Query: 153 LIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKR-VLDSCLKTMALLVHDVQSTE 211
           L  L  GN+ S    +   +GG + + +I   MR  +   +L +  + + +L     +  
Sbjct: 164 LQILAYGNQESKLIIL--ASGGPQALVNI---MRTYTYEKLLWTTSRVLKVLSVCSSNKP 218

Query: 212 TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS 271
                GG + L   L D ++   + N  + +   S    +             L+  ++ 
Sbjct: 219 AIVEAGGMQALGLHLTDPSQR-LVQNCLWTLRNLSDAATKQEGME-------GLLGTLVQ 270

Query: 272 RQRNDSIQSLYDAIRVL--LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS 329
              +D I  +  A  +L  LT ++ +              ++G   ALV ++        
Sbjct: 271 LLGSDDINVVTCAAGILSNLTCNNYK--------NKMMVCQVGGIEALVRTVLRAGDRED 322

Query: 330 LI-SASIALKAVAV----NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384
           +   A  AL+ +       +    +V  + G+  +++ +       +  + +    L+  
Sbjct: 323 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS---HWPLIKATVGLIRN 379

Query: 385 LAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGS 444
           LA   +N + + E G + +L+ +           +      T             +E  +
Sbjct: 380 LALCPANHAPLREQGAIPRLVQLLV--RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT 437

Query: 445 GDLAIQA--------------------MLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL 484
           G L I A                    +L  P  + +QR +  ++  L A++ E  + + 
Sbjct: 438 GALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCEL-AQDKEAAEAIE 495

Query: 485 SNG-VEKLIRQAKENHEICKDAATDALRDL 513
           + G    L       +E     A   L  +
Sbjct: 496 AEGATAPLTELLHSRNEGVATYAAAVLFRM 525

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 29/312 (9%), Positives = 89/312 (28%), Gaps = 27/312 (8%)

Query: 185 MRCGSKRVLDSCLKTMALLV-HDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVV 243
           +      V+      ++ L  ++ ++       GG + LV  ++   +  +I       +
Sbjct: 272 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

Query: 244 ---AASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQ----- 295
               +     E+ + +        +++++L    +  +      +   L           
Sbjct: 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLR 391

Query: 296 -------VVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICK 348
                  +V   V  +     +  +       +        +   + AL  +A +     
Sbjct: 392 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 451

Query: 349 SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVS 408
            +     I   ++ +        + + R+   +L +LA       AI   G    L  + 
Sbjct: 452 VIRGLNTIPLFVQLLYS----PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 507

Query: 409 ARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFM 468
              S +  V     +++  +S   P++  + +          ++ +         ++   
Sbjct: 508 H--SRNEGVATYAAAVLFRMSEDKPQDYKKRLSVE----LTSSLFR-TEPMAWNETADLG 560

Query: 469 IRNLVARNPENR 480
           +       P   
Sbjct: 561 LDIGAQGEPLGY 572

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 84.3 bits (208), Expect = 3e-17
 Identities = 61/373 (16%), Positives = 133/373 (35%), Gaps = 28/373 (7%)

Query: 153 LIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTET 212
           + +L          A+      V  +                    T+  L H  +    
Sbjct: 174 VHQLSKKEA--SRHAIMRSPQMVSAIVRTMQ--NTNDVETARCTSGTLHNLSHHREGLLA 229

Query: 213 FRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR 272
               GG   LVN+L  G+    +L      +       E  K +       + ++ +L++
Sbjct: 230 IFKSGGIPALVNML--GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 287

Query: 273 QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332
                +    D +++L   + +  +              G  +ALV+ +        L +
Sbjct: 288 TNVKFLAITTDCLQILAYGNQESKLI---------ILASGGPQALVNIMRTYTYEKLLWT 338

Query: 333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK 392
            S  LK ++V      ++ E GG+ AL   + D     ++ + + C   L  L  SD+  
Sbjct: 339 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD----PSQRLVQNCLWTLRNL--SDAAT 392

Query: 393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAM 452
                 G +  L+ +    SDD +V+     I++ L+  + +N     + G  +  ++ +
Sbjct: 393 KQEGMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 450

Query: 453 LKFPNAQQLQRSSCFMIRNLVARNPENRK----LLLSNGVEKLIRQAK-ENHEICKDAAT 507
           L+  + + +   +   +R+L +R+ +       + L  G+  +++     +H     A  
Sbjct: 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510

Query: 508 DALRDLGLDDYNK 520
             +R+L L   N 
Sbjct: 511 GLIRNLALCPANH 523

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 70.4 bits (172), Expect = 6e-13
 Identities = 58/377 (15%), Positives = 126/377 (33%), Gaps = 58/377 (15%)

Query: 153 LIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKR-VLDSCLKTMALLVHDVQSTE 211
           L  L  GN+ S    +   +GG + + +I   MR  +   +L +  + + +L     +  
Sbjct: 300 LQILAYGNQESKLIIL--ASGGPQALVNI---MRTYTYEKLLWTTSRVLKVLSVCSSNKP 354

Query: 212 TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS 271
                GG + L   L D ++          V     T   +   +  +  ++ L+  ++ 
Sbjct: 355 AIVEAGGMQALGLHLTDPSQR--------LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 406

Query: 272 RQRNDSIQSLYDAIRVL--LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS 329
              +D I  +  A  +L  LT ++ +              ++G   ALV ++        
Sbjct: 407 LLGSDDINVVTCAAGILSNLTCNNYK--------NKMMVCQVGGIEALVRTVLRAGDRED 458

Query: 330 LI-SASIALKAVAV----NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384
           +   A  AL+ +       +    +V  + G+  +++ +       +  + +    L+  
Sbjct: 459 ITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS---HWPLIKATVGLIRN 515

Query: 385 LAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGS 444
           LA   +N + + E G + +L+ +           +      T             +EA +
Sbjct: 516 LALCPANHAPLREQGAIPRLVQLLV--RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACT 573

Query: 445 GDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLS-NGVEKLIRQAKENHEICK 503
           G L I                       +AR+  NR ++   N +   ++      E  +
Sbjct: 574 GALHI-----------------------LARDIHNRIVIRGLNTIPLFVQLLYSPIENIQ 610

Query: 504 DAATDALRDLGLDDYNK 520
             A   L +L  D    
Sbjct: 611 RVAAGVLCELAQDKEAA 627

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 66.2 bits (161), Expect = 1e-11
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 20/220 (9%)

Query: 308 FAKIGIARALVHSLHAGLSSPSLI----SASIALKAVAVNDE--ICKSVAENGGIDALLR 361
           F +       + S     + P+ +      S  LK   VN       +      I  L +
Sbjct: 98  FPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTK 157

Query: 362 CIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEV 421
            ++D     ++ V      ++ +L+  ++++ AI+ +  M   IV + + ++D    +  
Sbjct: 158 LLND----EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 213

Query: 422 MSIITVLSLRSPENAARAMEAGSGDLAIQA---MLKFPNAQQLQRSSCFMIRNLVARNPE 478
              +  LS    E      ++G     I A   ML  P    +   +   + NL+     
Sbjct: 214 SGTLHNLS-HHREGLLAIFKSG----GIPALVNMLGSPVD-SVLFHAITTLHNLLLHQEG 267

Query: 479 NRKLLL-SNGVEKLIRQAKENHEICKDAATDALRDLGLDD 517
            +  +  + G++K++    + +       TD L+ L   +
Sbjct: 268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 56.6 bits (136), Expect = 1e-08
 Identities = 28/275 (10%), Positives = 83/275 (30%), Gaps = 22/275 (8%)

Query: 185 MRCGSKRVLDSCLKTMA-LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAV- 242
           +      V+      ++ L  ++ ++       GG + LV  ++   +  +I        
Sbjct: 408 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467

Query: 243 --VAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQ----- 295
             + +     E+ + +        +++++L    +  +      +   L           
Sbjct: 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLR 527

Query: 296 -------VVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICK 348
                  +V   V  +     +  +       +        + + + AL  +A +     
Sbjct: 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRI 587

Query: 349 SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVS 408
            +     I   ++ +        + + R+   +L +LA       AI   G    L  + 
Sbjct: 588 VIRGLNTIPLFVQLLYS----PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 643

Query: 409 ARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG 443
              S +  V     +++  +S   P++  + +   
Sbjct: 644 H--SRNEGVATYAAAVLFRMSEDKPQDYKKRLSVE 676

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 80.6 bits (199), Expect = 2e-16
 Identities = 61/365 (16%), Positives = 129/365 (35%), Gaps = 26/365 (7%)

Query: 161 EGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPK 220
           + +   A+      V  +                    T+  L H  +        GG  
Sbjct: 47  KEASRHAIMRSPQMVSAIVRTM--QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIP 104

Query: 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS 280
            LV +L  G+    +L      +       E  K +       + ++ +L++     +  
Sbjct: 105 ALVKML--GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 162

Query: 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340
             D +++L   + +                 G  +ALV+ +        L + S  LK +
Sbjct: 163 TTDCLQILAYGNQE---------SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213

Query: 341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGG 400
           +V      ++ E GG+ AL   + D     ++ + + C   L  L  SD+        G 
Sbjct: 214 SVCSSNKPAIVEAGGMQALGLHLTD----PSQRLVQNCLWTLRNL--SDAATKQEGMEGL 267

Query: 401 MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ 460
           +  L  V    SDD +V+     I++ L+  + +N     + G  +  ++ +L+  + + 
Sbjct: 268 LGTL--VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325

Query: 461 LQRSSCFMIRNLVARNPENRK----LLLSNGVEKLIRQAK-ENHEICKDAATDALRDLGL 515
           +   +   +R+L +R+ E       + L  G+  +++     +H     A    +R+L L
Sbjct: 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385

Query: 516 DDYNK 520
              N 
Sbjct: 386 CPANH 390

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 66.7 bits (163), Expect = 7e-12
 Identities = 60/390 (15%), Positives = 134/390 (34%), Gaps = 57/390 (14%)

Query: 153 LIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKR-VLDSCLKTMALLVHDVQSTE 211
           L  L  GN+   +  +   +GG + + +I   MR  +   +L +  + + +L     +  
Sbjct: 167 LQILAYGNQ--ESKLIILASGGPQALVNI---MRTYTYEKLLWTTSRVLKVLSVCSSNKP 221

Query: 212 TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS 271
                GG + L   L D ++   + N  + +   S    +      +   +  L+ ++L 
Sbjct: 222 AIVEAGGMQALGLHLTDPSQR-LVQNCLWTLRNLSDAATKQEGMEGL---LGTLV-QLL- 275

Query: 272 RQRNDSIQSLYDAIRVL--LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS 329
              +D I  +  A  +L  LT ++ +              ++G   ALV ++        
Sbjct: 276 --GSDDINVVTCAAGILSNLTCNNYK--------NKMMVCQVGGIEALVRTVLRAGDRED 325

Query: 330 LI-SASIALKAVAV----NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384
           +   A  AL+ +       +    +V  + G+  +++ +       +  + +    L+  
Sbjct: 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS---HWPLIKATVGLIRN 382

Query: 385 LAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGS 444
           LA   +N + + E G + +L+ +           +      T             +E  +
Sbjct: 383 LALCPANHAPLREQGAIPRLVQLLV--RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT 440

Query: 445 GDLAIQA--------------------MLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL 484
           G L I A                    +L  P  + +QR +  ++  L A++ E  + + 
Sbjct: 441 GALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCEL-AQDKEAAEAIE 498

Query: 485 SNG-VEKLIRQAKENHEICKDAATDALRDL 513
           + G    L       +E     A   L  +
Sbjct: 499 AEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 28/172 (16%), Positives = 66/172 (38%), Gaps = 14/172 (8%)

Query: 350 VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA 409
                 I  L + ++D     ++ V      ++ +L+  ++++ AI+ +  M   IV + 
Sbjct: 13  ELATRAIPELTKLLND----EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68

Query: 410 RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA---MLKFPNAQQLQRSSC 466
           + ++D    +     +  LS    E      ++G     I A   ML  P    +   + 
Sbjct: 69  QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSG----GIPALVKMLGSPV-DSVLFYAI 122

Query: 467 FMIRNLVARNPENRKLLL-SNGVEKLIRQAKENHEICKDAATDALRDLGLDD 517
             + NL+      +  +  + G++K++    + +       TD L+ L   +
Sbjct: 123 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 73.5 bits (181), Expect = 7e-15
 Identities = 52/230 (22%), Positives = 103/230 (44%), Gaps = 28/230 (12%)

Query: 284 AIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV- 342
               +L+  ++Q+ A             G   ALV  L +  +   L  A  AL  +A  
Sbjct: 35  KFSQILSDGNEQIQA---------VIDAGALPALVQLLSSP-NEQILQEALWALSNIASG 84

Query: 343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGM 401
            +E  ++V + G + AL++ +       N+ + +     LS +A G +    A+I+ G +
Sbjct: 85  GNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140

Query: 402 DKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA---MLKFPNA 458
             L  V    S +  +LQE +  ++ ++    E     ++AG    A+ A   +L  PN 
Sbjct: 141 PAL--VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG----ALPALVQLLSSPNE 194

Query: 459 QQLQRSSCFMIRNLVARNPENRKLLL-SNGVEKLIR-QAKENHEICKDAA 506
           Q + + + + + N+ +   E ++ +  +  +EKL + Q+ EN +I K+A 
Sbjct: 195 Q-ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 243

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 26/170 (15%), Positives = 67/170 (39%), Gaps = 16/170 (9%)

Query: 349 SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVV 407
                  +  + + ++      +           S++    +    A+I+ G +  L  V
Sbjct: 7   HHHHGSELPQMTQQLNS----DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPAL--V 60

Query: 408 SARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAM---LKFPNAQQLQRS 464
               S +  +LQE +  ++ ++    E     ++AG    A+ A+   L  PN +Q+ + 
Sbjct: 61  QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG----ALPALVQLLSSPN-EQILQE 115

Query: 465 SCFMIRNLVARNPENRKLLL-SNGVEKLIRQAKENHEICKDAATDALRDL 513
           + + + N+ +   E  + ++ +  +  L++     +E     A  AL ++
Sbjct: 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 9/120 (7%)

Query: 312 GIARALVHSLHAGLSSPSLISASIAL-KAVAVNDEICKSVAENGGIDALLRCIDDSGLQG 370
           G   ALV  L +  +   L  A  AL    +  +E  ++V + G + AL++ +       
Sbjct: 138 GALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS----P 192

Query: 371 NKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429
           N+ + +     LS +A G +  K A+ E G ++KL  + +   ++  + +E    +  L 
Sbjct: 193 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS--HENEKIQKEAQEALEKLQ 250

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 66.0 bits (161), Expect = 7e-12
 Identities = 52/273 (19%), Positives = 103/273 (37%), Gaps = 27/273 (9%)

Query: 260 LKIDELILEILSRQRNDSIQSLYDAIRVL--LTPDDDQVVASQVYGYARRFAKIGIARAL 317
           L++D  +  + +   + +++    A   L  LT  D    A+         +  G  RAL
Sbjct: 82  LQVDCEMYGLTNDHYSITLRRY--AGMALTNLTFGDVANKATLC-------SMKGCMRAL 132

Query: 318 VHSLHAGLSSPSLISASIALK--AVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA 375
           V  L +  S       +  L+  +   +    K++ E G + AL+ C  +   +      
Sbjct: 133 VAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 191

Query: 376 RICCSLLSKLA-GSDSNKSAIIENGGMDKLIV---VSARFSDDASVLQEVMSIITVLSL- 430
               S L  L+     NK+ I    G    +V        ++  ++++    I+  +S  
Sbjct: 192 ---LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248

Query: 431 --RSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL-SNG 487
              + ++     E       +Q  LK  +   +  ++C  + NL ARNP++++ L     
Sbjct: 249 IATNEDHRQILRENNCLQTLLQ-HLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMGA 306

Query: 488 VEKLIRQAKENHEICKDAATDALRDLGLDDYNK 520
           V  L       H++    +  ALR+L  +   K
Sbjct: 307 VSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 36/211 (17%), Positives = 80/211 (37%), Gaps = 18/211 (8%)

Query: 321 LHAGLSSPS---LISASIALKAVAVNDEICKSVAENGGIDALLR-------CIDDSGLQG 370
               + +P    +  A   L  ++ ++E   ++ E GG+ A+             +    
Sbjct: 37  DKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHY 96

Query: 371 NKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429
           + T+ R     L+ L  G  +NK+ +    G  + +V   + S+   + Q + S++  LS
Sbjct: 97  SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLS 155

Query: 430 LRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNG-- 487
            R+  N+ + +       A+         +   +S    + NL A   EN+  + +    
Sbjct: 156 WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGA 215

Query: 488 ----VEKLIRQAKENHEICKDAATDALRDLG 514
               V  L  +++ N     ++    LR++ 
Sbjct: 216 LAFLVGTLTYRSQTNTLAIIESGGGILRNVS 246

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 1e-11
 Identities = 92/563 (16%), Positives = 174/563 (30%), Gaps = 177/563 (31%)

Query: 1   MRTV-PKSYYKHFSNSEQIDFQKQSSLITL---PQPRAHPFV----PKDHPFFVRTDLTA 52
            +++  K    H   S+           TL    +     FV      ++ F + + +  
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM-SPIKT 100

Query: 53  HEMGP-PKTVRTISQ--------EAFDE--VVKENMEDLGMEPTEALQDAIQTL-SLQGV 100
            +  P   T   I Q        + F +  V +        +P   L+ A+  L   + V
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL-------QPYLKLRQALLELRPAKNV 153

Query: 101 DLSGIVKCVPGESSLKDNPLIQSLERLKQLD-----LNSKDKFSDEDLNEMMGLFDKLIE 155
            + G++    G++ +  +    S +   ++D     LN K+  S E + EM+      I+
Sbjct: 154 LIDGVLGS--GKTWVALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 156 --LCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLV-HDVQSTET 212
                 ++ S N  +   +   EL            +R+L S      LLV  +VQ+ + 
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAEL------------RRLLKSKPYENCLLVLLNVQNAKA 258

Query: 213 FRT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS 271
           +       K+L+          ++ +     ++A+ T +  +    M L  DE+   +L 
Sbjct: 259 WNAFNLSCKILLT-----TRFKQVTD----FLSAATTTHISLDHHSMTLTPDEV-KSLLL 308

Query: 272 RQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI 331
           +  +   Q L                         R       R L           S+I
Sbjct: 309 KYLDCRPQDL------------------------PREVLTTNPRRL-----------SII 333

Query: 332 SASIALKAVAVNDEIC-----KSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA 386
           + SI        D +      K V      D L   I+ S               L+ L 
Sbjct: 334 AESIR-------DGLATWDNWKHV----NCDKLTTIIESS---------------LNVLE 367

Query: 387 GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGD 446
            ++  K         D+L V    F   A +   ++S+   +     ++    +      
Sbjct: 368 PAEYRKM-------FDRLSV----FPPSAHIPTILLSL---IWFDVIKSDVMVV------ 407

Query: 447 LAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKEN----H--- 499
                        +L + S      LV + P+   + +   +   ++   EN    H   
Sbjct: 408 -----------VNKLHKYS------LVEKQPKESTISI-PSIYLELKVKLENEYALHRSI 449

Query: 500 ----EICKDAATDALRDLGLDDY 518
                I K   +D L    LD Y
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQY 472

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 6e-10
 Identities = 80/615 (13%), Positives = 162/615 (26%), Gaps = 248/615 (40%)

Query: 1   MRTVPKSYYKHF-SNSEQIDFQ----------KQSSLITL------------PQPRAHPF 37
           + +  +   + F     +I+++          +Q S++T              Q  A   
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 38  VPKDHPFF-VRTDL---------TAHEM-GPPKTVRTISQEAFDEVVKENMED------L 80
           V +  P+  +R  L             + G  KT   +        V+  M+       L
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-DVCLSYKVQCKMDFKIFWLNL 189

Query: 81  GMEPT-EALQDAIQTLSLQ-------GVD---------------LSGIVKCVPGESSLK- 116
               + E + + +Q L  Q         D               L  ++K  P E+ L  
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 117 -DNPLIQSLERLKQLDLNSK------DK-------------FSDEDLN------EMMGLF 150
             N  +Q+ +     +L+ K       K              S +  +      E+  L 
Sbjct: 250 LLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 151 DKLI---------ELCGGNEGSVNAAVATKNGGVELVCSIC-------------YKMRCG 188
            K +         E+   N                   SI              +K    
Sbjct: 308 LKYLDCRPQDLPREVLTTNP---------------RRLSIIAESIRDGLATWDNWKHVNC 352

Query: 189 SK--RVLDSCLKT------------MALLVHDVQSTETFRTGGGPKLLVNIL---IDGNE 231
            K   +++S L              +++                  LL  ++   +  ++
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT--------ILLS-LIWFDVIKSD 403

Query: 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP 291
              ++N             ++ K S            ++ +Q  +S  S+      L   
Sbjct: 404 VMVVVN-------------KLHKYS------------LVEKQPKESTISIPSIYLELKVK 438

Query: 292 DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSV- 350
            +++                        +LH      S++      K    +D I   + 
Sbjct: 439 LENEY-----------------------ALHR-----SIVDHYNIPKTFDSDDLIPPYLD 470

Query: 351 -------------AENGGIDALLRCI--DDSGLQGNKTVARICCSLLSKLAGSDSNKSAI 395
                         E+     L R +  D   L+      +I      +   +  N S  
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-----QKI------RHDSTAWNASGS 519

Query: 396 IENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF 455
           I N     L        D+    + +++ I     +  EN   +      DL ++  L  
Sbjct: 520 ILNTLQQ-LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT---DL-LRIALMA 574

Query: 456 PN-------AQQLQR 463
            +        +Q+QR
Sbjct: 575 EDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 51/349 (14%), Positives = 99/349 (28%), Gaps = 79/349 (22%)

Query: 227 IDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-------DSIQ 279
            D  +  ++  S    + +    + ++           L   +LS+Q         + ++
Sbjct: 33  FDCKDVQDMPKS----ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88

Query: 280 S----LYDAIRVLLTPDDDQVVASQVYGYAR--------RFAKIGIARA-LVHSLHAGLS 326
                L   I+   T      + +++Y   R         FAK  ++R      L   L 
Sbjct: 89  INYKFLMSPIK---TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 327 SPSLISAS-IAL-------KAVAVNDEICKSVAE----NGGID--ALLRCIDDSGL--QG 370
              L  A  + +       K      ++C S       +  I    L  C     +    
Sbjct: 146 --ELRPAKNVLIDGVLGSGKTWVAL-DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 371 NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430
            K + +I  +  S+   S + K  I       + ++ S  + +   VL  V         
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--------- 253

Query: 431 RSPENAARAMEAG------SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLL- 483
           ++ + A  A          +    +   L    A     S       L     E + LL 
Sbjct: 254 QNAK-AWNAFNLSCKILLTTRFKQVTDFLS--AATTTHISLDHHSMTLTP--DEVKSLLL 308

Query: 484 --LSNGVEKLIRQAKENH--------EICKDAAT--DALRDLGLDDYNK 520
             L    + L R+    +        E  +D     D  + +  D    
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 65.4 bits (159), Expect = 1e-11
 Identities = 59/355 (16%), Positives = 123/355 (34%), Gaps = 38/355 (10%)

Query: 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPE 234
           VE+V S+   +    K  +   L  M+       S  + R  G   LL+ +L   ++D  
Sbjct: 31  VEMVYSLLSMLGTHDKDDMSRTLLAMS---SSQDSCISMRQSGCLPLLIQLLHGNDKDS- 86

Query: 235 ILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD 294
                  V+  ++ G++  +      +    +  I+  Q +D        +  LL     
Sbjct: 87  -------VLLGNSRGSKEARA-----RASAALHNIIHSQPDDKRGRREIRVLHLLEQIRA 134

Query: 295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG 354
                  +  A           +            +  A   L  ++ ++E   ++ E G
Sbjct: 135 YCETCWEWQEAHEPGMDQDKNPMPAP-----VEHQICPAVCVLMKLSFDEEHRHAMNELG 189

Query: 355 GIDALLRCI-------DDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIEN-GGMDKLI 405
           G+ A+   +         +    + T+ R     L+ L  G  +NK+ +    G M  L 
Sbjct: 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRAL- 248

Query: 406 VVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSS 465
            V+   S+   + Q + S++  LS R+  N+ + +       A+         +   +S 
Sbjct: 249 -VAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307

Query: 466 CFMIRNLVARNPENRKLLLSNG------VEKLIRQAKENHEICKDAATDALRDLG 514
              + NL A   EN+  + +        V  L  +++ N     ++    LR++ 
Sbjct: 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 63.4 bits (154), Expect = 6e-11
 Identities = 45/222 (20%), Positives = 86/222 (38%), Gaps = 16/222 (7%)

Query: 309 AKIGIARALVHSLHAGLSSPSLISASIALK--AVAVNDEICKSVAENGGIDALLRCIDDS 366
           +  G  RALV  L +  S       +  L+  +   +    K++ E G + AL+ C  + 
Sbjct: 240 SMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV 298

Query: 367 GLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIV---VSARFSDDASVLQEVM 422
             +          S L  L+     NK+ I    G    +V        ++  ++++   
Sbjct: 299 KKESTLKSV---LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 355

Query: 423 SIITVLS---LRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN 479
            I+  +S     + ++     E       +Q  LK  +   +  ++C  + NL ARNP++
Sbjct: 356 GILRNVSSLIATNEDHRQILRENNCLQTLLQ-HLKSHS-LTIVSNACGTLWNLSARNPKD 413

Query: 480 RKLLLSNG-VEKLIRQAKENHEICKDAATDALRDLGLDDYNK 520
           ++ L   G V  L       H++    +  ALR+L  +   K
Sbjct: 414 QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 455

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 60.4 bits (146), Expect = 3e-10
 Identities = 35/265 (13%), Positives = 77/265 (29%), Gaps = 27/265 (10%)

Query: 231 EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVL-- 288
                L    + +       E +K   + +    +       ++    Q    A+ +L  
Sbjct: 8   HHSSGLVPRGSHMRGQRGEVEQMKSC-LRVLSQPMPPTAGEAEQAADQQEREGALELLAD 66

Query: 289 LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS----LISASIALKAVAVND 344
           L  + D          A  F ++     LV      L + +      +A +         
Sbjct: 67  LCENMD---------NAADFCQLSGMHLLVGRY---LEAGAAGLRWRAAQLIGTCSQNVA 114

Query: 345 EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDK 403
            I + V   G +  LLR +D        TV       +S L    ++     +   G   
Sbjct: 115 AIQEQVLGLGALRKLLRLLDRDA---CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV 171

Query: 404 LIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQR 463
           L  + A       +  +   ++  L +  PE+       G     +  +++  ++     
Sbjct: 172 L--MRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA-LVRTEHS-PFHE 227

Query: 464 SSCFMIRNLVARNPENRKLLLSNGV 488
                + +LV   P+  +      +
Sbjct: 228 HVLGALCSLVTDFPQGVRECREPEL 252

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 54.3 bits (130), Expect = 3e-08
 Identities = 22/137 (16%), Positives = 48/137 (35%), Gaps = 3/137 (2%)

Query: 382 LSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME 441
           L+ L  +  N +   +  GM  L+      +  A +      +I   S        + + 
Sbjct: 64  LADLCENMDNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGTCSQNVAAIQEQVLG 122

Query: 442 AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL-SNGVEKLIRQAKENHE 500
            G+    ++ +L       ++  + F I  LV          L  +G   L+R  ++  +
Sbjct: 123 LGALRKLLR-LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ 181

Query: 501 ICKDAATDALRDLGLDD 517
             K  +   L++L +  
Sbjct: 182 KLKVKSAFLLQNLLVGH 198

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 29/170 (17%), Positives = 72/170 (42%), Gaps = 16/170 (9%)

Query: 349 SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVV 407
                  +  +++ ++      ++   +     LS++A G +    A+I+ G +  L  V
Sbjct: 7   HHHHGSELPQMVQQLNS----PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPAL--V 60

Query: 408 SARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAM---LKFPNAQQLQRS 464
               S +  +LQE +  ++ ++    E     ++AG    A+ A+   L  PN Q + + 
Sbjct: 61  QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG----ALPALVQLLSSPNEQ-ILQE 115

Query: 465 SCFMIRNLVARNPENRKLLL-SNGVEKLIRQAKENHEICKDAATDALRDL 513
           + + + N+ +   E  + ++ +  +  L++     +E     A  AL ++
Sbjct: 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 30/152 (19%), Positives = 64/152 (42%), Gaps = 26/152 (17%)

Query: 284 AIRVLLTPDDDQVVASQVYGYARRFAKIGIARA-LVHSLHAGLSSPSLISASIALKAV-- 340
           A+  + +  ++Q+ A              +  A  + +L   LSSP+      AL A+  
Sbjct: 77  ALSNIASGGNEQIQA--------------VIDAGALPALVQLLSSPNEQILQEALWALSN 122

Query: 341 --AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIE 397
             +  +E  ++V + G + AL++ +       N+ + +     LS +A G +  K A+ E
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQKQAVKE 178

Query: 398 NGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429
            G ++KL     +  ++  + +E    +  L 
Sbjct: 179 AGALEKL--EQLQSHENEKIQKEAQEALEKLQ 208

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 56.8 bits (137), Expect = 8e-09
 Identities = 53/374 (14%), Positives = 117/374 (31%), Gaps = 47/374 (12%)

Query: 153 LIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA-LLVHDVQSTE 211
           L  +  GN       +  + G V +   +   +    + V +  +  +  +        +
Sbjct: 89  LTNIASGNSLQTRIVI--QAGAVPIFIEL---LSSEFEDVQEQAVWALGNIAGDSTMCRD 143

Query: 212 TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS 271
                     L+ +    N      N+ +A+           K    E       L +LS
Sbjct: 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC-----RGKSPPPEFAKVSPCLNVLS 198

Query: 272 RQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSL 330
                     L DA   L        ++       +     G+ R LV  L         
Sbjct: 199 WLLFVSDTDVLADACWALSY------LSDGPNDKIQAVIDAGVCRRLVELL----MHNDY 248

Query: 331 ISASIALKA----VAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL- 385
              S AL+A    V  +D   + +     + +LL  +        +++ +  C  +S + 
Sbjct: 249 KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS----PKESIKKEACWTISNIT 304

Query: 386 AGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSG 445
           AG+ +    +I+      LI +    + +    +E    IT  +        + +     
Sbjct: 305 AGNRAQIQTVIDANIFPALISILQ--TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGC 362

Query: 446 DLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL------------SNGVEKLIR 493
              +  +L   ++ ++ + +   + N++    +  K               + G++K+  
Sbjct: 363 IKPLCDLLTVMDS-KIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF 421

Query: 494 -QAKENHEICKDAA 506
            Q+ EN EI + A 
Sbjct: 422 LQSHENQEIYQKAF 435

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 23/189 (12%), Positives = 62/189 (32%), Gaps = 10/189 (5%)

Query: 336 ALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKS-- 393
           A+          +          ++  I       +            KL   + N    
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFS----KSPEQQLSATQKFRKLLSKEPNPPID 57

Query: 394 AIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAML 453
            +I   G+    V   +  ++ ++  E   ++T ++  +       ++AG+  + I+ +L
Sbjct: 58  EVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIE-LL 116

Query: 454 KFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNG-VEKLIRQAKENHEI-CKDAATDALR 511
                + +Q  + + + N+   +   R  +L    +  L++   + + +     A  AL 
Sbjct: 117 SSEF-EDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALS 175

Query: 512 DLGLDDYNK 520
           +L       
Sbjct: 176 NLCRGKSPP 184

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 32/255 (12%), Positives = 86/255 (33%), Gaps = 18/255 (7%)

Query: 264 ELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHA 323
           + +L +         +    A+  +    + +V  S           + + R L++ L  
Sbjct: 539 KALLRMALEGTEKGKRHATQALARIGITINPEVSFSG-------QRSLDVIRPLLNLLQQ 591

Query: 324 GLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLL 382
             ++     + +AL  +A +N+ + + + +  G+  +   + +     +  + R     L
Sbjct: 592 DCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED----HLYLTRAAAQCL 647

Query: 383 SKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA 442
             L  S+        N    K + +     +D          + +++  S +   + +  
Sbjct: 648 CNLVMSEDVIKMFEGNNDRVKFLALLCE-DEDEETATACAGALAIITSVSVKCCEKILAI 706

Query: 443 GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEK----LIRQAKEN 498
            S    +  ++  P+   +Q     +I N++    E  K L    + +    L +   + 
Sbjct: 707 ASWLDILHTLIANPS-PAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDT 765

Query: 499 HEICKDAATDALRDL 513
               ++ AT  L   
Sbjct: 766 RAKAREVATQCLAAA 780

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 54.6 bits (131), Expect = 1e-08
 Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 22/196 (11%)

Query: 315 RALVHSLHAGLSSPSLISASI-ALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNK 372
              V  L A    PS ISA+   ++       E  K V +  GI  LL+ +       N+
Sbjct: 11  ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV----QNE 66

Query: 373 TVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR 431
            V R  C  L  L    + NK  + E  G+ +L+ V  + + D    +++  ++  LS  
Sbjct: 67  DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQV-LKQTRDLETKKQITGLLWNLSSN 125

Query: 432 SPENAARAMEAGS------------GDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN 479
                    EA                              +  +    +RN+ +   + 
Sbjct: 126 DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADG 185

Query: 480 RKLLLSNG--VEKLIR 493
           RK +      ++ L+ 
Sbjct: 186 RKAMRRCDGLIDSLVH 201

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 43.4 bits (102), Expect = 6e-05
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 10/114 (8%)

Query: 412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA---MLKFPNAQQLQRSSCFM 468
               S +    + I     +  E   R  +       I     +LK  N   +QR+ C  
Sbjct: 21  HMLPSRISAAATFIQHECFQKSEARKRVNQLR----GILKLLQLLKVQNED-VQRAVCGA 75

Query: 469 IRNLVARNPENRKLLL-SNGVEKLIRQAKENHEI-CKDAATDALRDLGLDDYNK 520
           +RNLV  + +N+  +   NGV +L++  K+  ++  K   T  L +L  +D  K
Sbjct: 76  LRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 27/190 (14%), Positives = 70/190 (36%), Gaps = 6/190 (3%)

Query: 325 LSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384
              P+  + S      +V+ +          +  + + ++   +Q   +       +LS+
Sbjct: 58  FIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSR 117

Query: 385 LAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGS 444
                     +I+ G + +L V   R +    +  E    +T ++  +       ++A +
Sbjct: 118 --EHRPPIDVVIQAGVVPRL-VEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 174

Query: 445 GDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNG-VEKLIRQAKENHEICK 503
             L IQ +L   +  +++  + + + N+   + + R  +L    +E ++     N     
Sbjct: 175 VPLFIQ-LLYTGS-VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLI 232

Query: 504 DAATDALRDL 513
             AT  L +L
Sbjct: 233 RTATWTLSNL 242

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 47.7 bits (113), Expect = 7e-06
 Identities = 51/376 (13%), Positives = 119/376 (31%), Gaps = 50/376 (13%)

Query: 153 LIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA-LLVHDVQSTE 211
           L  +  G        V      V L       +  GS  V +  +  +  +        +
Sbjct: 155 LTNIASGTSAQTKVVV--DADAVPL---FIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 209

Query: 212 TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV-KESYMELKIDELILEIL 270
                   + ++ +                  A     N    K+   +  +    L  L
Sbjct: 210 YVLQCNAMEPILGLFNSNKPS-------LIRTATWTLSNLCRGKKPQPDWSVVSQALPTL 262

Query: 271 SRQ-RNDSIQSLYDAIRVL--LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS 327
           ++   +   ++L DA   +  L+    + + + +         + I + LV  L    S+
Sbjct: 263 AKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI--------DVRIPKRLVELLSHE-ST 313

Query: 328 PSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL- 385
                A  A+  +   ND   + V   G + AL   +        + + +  C  +S + 
Sbjct: 314 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP----KENIKKEACWTISNIT 369

Query: 386 AGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAA--RAMEAG 443
           AG+     A+I+   +  L+ +      +    +E    I+  S    +     R + + 
Sbjct: 370 AGNTEQIQAVIDANLIPPLVKLLE--VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQ 427

Query: 444 SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL------------SNGVEKL 491
                +  +L+  +  ++   +   + N++     +++               + G+EK+
Sbjct: 428 GCIKPLCDLLEIADN-RIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 486

Query: 492 IR-QAKENHEICKDAA 506
              Q  EN +I + A 
Sbjct: 487 FNCQQNENDKIYEKAY 502

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 43/316 (13%), Positives = 95/316 (30%), Gaps = 26/316 (8%)

Query: 202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELK 261
           +        +     G    L+ +L   +    +       +  + +     K     L 
Sbjct: 170 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLS-TLACGYLRNLTWTLSNLCRNKNPAPPLD 228

Query: 262 IDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHS 320
             E IL  L R   ++  + L D+   +        +            K G+   LV  
Sbjct: 229 AVEQILPTLVRLLHHNDPEVLADSCWAISY------LTDGPNERIEMVVKKGVVPQLVKL 282

Query: 321 LHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICC 379
           L A    P +  A  A+  +    DE  + V + G +      + +        + +   
Sbjct: 283 LGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP----KTNIQKEAT 337

Query: 380 SLLSKL-AGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR 438
             +S + AG       ++ +G +    +V      D    +E    IT  +         
Sbjct: 338 WTMSNITAGRQDQIQQVVNHGLVPF--LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIV 395

Query: 439 AMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL------VARNPENRKLLL-SNGVEKL 491
            +        +  +L   +  ++ +     I N+      +    +   ++    G++K+
Sbjct: 396 YLVHCGIIEPLMNLLSAKDT-KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 454

Query: 492 IR-QAKENHEICKDAA 506
              Q  EN  + K + 
Sbjct: 455 EALQRHENESVYKASL 470

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 48.8 bits (115), Expect = 3e-06
 Identities = 29/178 (16%), Positives = 57/178 (32%), Gaps = 10/178 (5%)

Query: 312 GIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQG 370
                ++  L          +A+  L+ +   ND++   V +  GI  L+  +D      
Sbjct: 48  PELPEVIAMLGFR-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH----P 102

Query: 371 NKTVARICCSLLSKLA--GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVL 428
            K V    C  L  ++      NK AI    G+  L+ +  R + D  + + +   +  L
Sbjct: 103 KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRL-LRKARDMDLTEVITGTLWNL 161

Query: 429 SLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSN 486
           S          ++     L  + ++     ++     C            N    L N
Sbjct: 162 S-SHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRN 218

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 43.4 bits (101), Expect = 2e-04
 Identities = 44/370 (11%), Positives = 111/370 (30%), Gaps = 41/370 (11%)

Query: 165 NAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVN 224
           N        GV  +  +    +     + +    T+  L                 L   
Sbjct: 125 NKIAIKNCDGVPALVRLL--RKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDE 182

Query: 225 ILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDA 284
           ++I         +SG+            + E    L      L  +S +R+++ + L + 
Sbjct: 183 VII--------PHSGWEREPNEDCKPRHI-EWESVLTNTAGCLRNVSSERSEARRKLREC 233

Query: 285 -------IRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI---SAS 334
                  I ++      +   S++         + + R L + +H  +         + +
Sbjct: 234 DGLVDALIFIVQAEIGQKDSDSKLVENC-----VCLLRNLSYQVHREIPQAERYQEAAPN 288

Query: 335 IALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVAR--ICCSLLSKLAGSDSNK 392
           +A           + + +   +   +  + +S        +   I      +       +
Sbjct: 289 VANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIR 348

Query: 393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAI--- 449
           SA+ +   +  +       ++   V++     +  L+     N     +    +L     
Sbjct: 349 SALRQEKALSAI--ADLLTNEHERVVKAASGALRNLA-VDARNKELIGKHAIPNLVKNLP 405

Query: 450 --QAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL-SNGVEKLI---RQAKENHEICK 503
             Q    +  ++    S    I  ++A N E  K L  + G+EKL+   +    + +  +
Sbjct: 406 GGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVR 465

Query: 504 DAATDALRDL 513
            AA   L+ +
Sbjct: 466 AAAL-VLQTI 474

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 41.1 bits (95), Expect = 8e-04
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 5/124 (4%)

Query: 400 GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQ 459
            M    V S ++        E  S+ ++ SLR                 I  ML F    
Sbjct: 5   FMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIA-MLGFRL-D 62

Query: 460 QLQRSSCFMIRNLVARNPENRKLLLSNG-VEKLIRQAKENHEICKDAATDALRDL--GLD 516
            ++ ++   +++L  RN + +  +     +  L+       +     A  AL+++  G D
Sbjct: 63  AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD 122

Query: 517 DYNK 520
             NK
Sbjct: 123 QDNK 126

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 30/190 (15%), Positives = 69/190 (36%), Gaps = 11/190 (5%)

Query: 332 SASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNK---TVARICCSLLSKLAGS 388
           +    L     N +    +  +  I   L  +  S           A    +    L  S
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 389 DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLA 448
             ++   ++  G+ ++  +    S ++ V++   S+++ +S R P            ++ 
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQ--SGNSDVVRSGASLLSNMS-RHPLLHRVMGNQVFPEVT 377

Query: 449 ---IQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLS-NGVEKLIRQAKENH-EICK 503
                      N++ +  S+C+ +RNL+A  P+  K   S + +  +I   + +      
Sbjct: 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA 437

Query: 504 DAATDALRDL 513
           +AA   L D+
Sbjct: 438 EAARLLLSDM 447

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 35/340 (10%), Positives = 92/340 (27%), Gaps = 24/340 (7%)

Query: 202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELK 261
               D  + +     GG   LV++L   + +  +  +    +      +   K       
Sbjct: 29  TCFQDESAKQQVYQLGGICKLVDLL--RSPNQNVQQAAAGALRNLVFRSTTNKLETRRQN 86

Query: 262 IDELILEILSRQRNDSIQSL-YDAIRVLLTPDDDQVV----ASQVYGYARRFAKIGIARA 316
                + +L R  N  IQ      +  L + D+ +      A  V          G    
Sbjct: 87  GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDG 146

Query: 317 LVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGI----DALLRCIDDSGLQGNK 372
             +     +      +A+  L+ ++  D   +++    G+     A ++    +    +K
Sbjct: 147 NSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDK 206

Query: 373 TVARICCSLLSKLAGSDSNKSAIIE------NGGMDKLIVVSARFSDDASVLQEVMSIIT 426
           +V    C L +     D+                  +        +    ++        
Sbjct: 207 SVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPL 266

Query: 427 VLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRK----- 481
                +P+ +     + +    +  ++          +    ++NL A            
Sbjct: 267 PEEETNPKGSGWLYHSDAIRTYLN-LMGKSKKDATLEACAGALQNLTASKGLMSSGMSQL 325

Query: 482 -LLLSNGVEKLIRQAKENHEICKDAATDALRDLGLDDYNK 520
             L   G+ ++ R  +  +     +    L ++       
Sbjct: 326 IGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH 365

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 47.5 bits (112), Expect = 7e-06
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN 471
           S D          I     +      +  + G     +  +L+ PN Q +Q+++   +RN
Sbjct: 13  SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVD-LLRSPN-QNVQQAAAGALRN 70

Query: 472 LVARNPENRKLLL-SNGVEKLIRQAKENHEI-CKDAATDALRDLGLDDYNK 520
           LV R+  N+      NG+ + +   +       +   T  L +L   D  K
Sbjct: 71  LVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	520
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.98
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.98
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.98
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.98
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.98
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.97
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.97
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.97
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.97
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.97
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.97
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.92
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.91
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.91
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.9
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.89
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.88
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.87
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.86
3grl_A	651	General vesicular transport factor P115; vesicle t	99.66
3grl_A	651	General vesicular transport factor P115; vesicle t	99.61
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.19
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.17
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.13
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.1
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.05
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.91
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.87
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.84
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.82
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.76
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.72
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.71
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.67
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.64
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.59
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.59
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.56
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.52
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.42
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.39
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.38
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.32
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.15
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.95
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.89
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.83
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.59
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.58
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.53
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.33
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.22
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.17
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.11
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.08
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.94
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	96.9
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.79
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.77
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.51
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	96.25
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.59
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	95.56
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	95.36
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	95.27
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	95.11
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	95.0
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	94.68
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	94.48
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	93.92
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	93.88
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	93.55
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	93.21
2x1g_F	971	Cadmus; transport protein, developmental protein,	93.09
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.06
2x1g_F	971	Cadmus; transport protein, developmental protein,	92.99
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	92.52
2x19_B	963	Importin-13; nuclear transport, protein transport;	91.95
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	91.59
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	90.85
2x19_B	963	Importin-13; nuclear transport, protein transport;	90.65
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	89.83
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	89.22
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	88.9
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	88.58
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	87.8
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	86.6
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	83.87

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1e-39  Score=346.15  Aligned_cols=371  Identities=16%  Similarity=0.170  Sum_probs=285.9

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhccc---------C
Q 010019          118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC---------G  188 (520)
Q Consensus       118 ~~~~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~---------~  188 (520)
                      ++-.+.+..|.+.+.+       .|.++   ..+.|-.++.   +++.|..++++|+||.||++|+..+.         +
T Consensus        28 ~~~~~~~~~l~~~~~~-------~~~~~---~~~~ll~~~~---~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~   94 (458)
T 3nmz_A           28 GTKVEMVYSLLSMLGT-------HDKDD---MSRTLLAMSS---SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRG   94 (458)
T ss_dssp             ------------------------CCHH---HHHHHHHHHS---STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCC
T ss_pred             CchHHHHHHHHHHhcC-------CCHHH---HHHHHHHHHc---CCcHHHHHHHCCCHHHHHHHHhcccccccccccccC
Confidence            4445567788888876       55554   4444444454   67789999999999999999997543         4


Q ss_pred             cHHHHHHHHHHHHHhhcccccc-hhHHhcCCc----------HHHHHHHhcCCCCh------------HHHHHHHHHHHH
Q 010019          189 SKRVLDSCLKTMALLVHDVQST-ETFRTGGGP----------KLLVNILIDGNEDP------------EILNSGFAVVAA  245 (520)
Q Consensus       189 ~~~~~~~al~~La~l~~~~~~~-~~i~~~ggi----------~~Lv~lL~~~~~~~------------~v~~~a~~~L~~  245 (520)
                      +++++.+|+++|+++..+++.. ...++.+.+          +.+++++.+.+.+.            +.++.|+|+|.+
T Consensus        95 ~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~n  174 (458)
T 3nmz_A           95 SKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMK  174 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHH
Confidence            5788888888888888777543 333445555          55667776653111            234589999999


Q ss_pred             HhcCChhhHHHHHhcCCHHHHHHHHhcC-----------ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHc-CC
Q 010019          246 SATGNEVVKESYMELKIDELILEILSRQ-----------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-GI  313 (520)
Q Consensus       246 ~~~~~e~nr~~i~~~g~i~~Lv~lL~~~-----------~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~-g~  313 (520)
                      ++. ++++|+.+++.|++++|+.+|...           ..+++++|+|+|+|||.+++..         ...+.+. |+
T Consensus       175 ls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~---------k~~i~~~~Ga  244 (458)
T 3nmz_A          175 LSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN---------KATLCSMKGC  244 (458)
T ss_dssp             HTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHH---------HHHHHHCHHH
T ss_pred             hcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCccc---------HHHHHHcCCc
Confidence            954 689999999999999999999531           1267889999999999987532         1245444 55


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCc
Q 010019          314 ARALVHSLHAGLSSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDS  390 (520)
Q Consensus       314 l~~Lv~lL~~~~~~~~~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~  390 (520)
                      ||+|+.+|++ .+.+++..++|+|+||+.  +++++..|++.|||++|+++|..+.   +..+++.++++|+||+. +++
T Consensus       245 Ip~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~---~~~v~~~A~~aL~nLs~~~~~  320 (458)
T 3nmz_A          245 MRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK---KESTLKSVLSALWNLSAHCTE  320 (458)
T ss_dssp             HHHHHHGGGC-SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC---SHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC---CHHHHHHHHHHHHHHccCCHH
Confidence            9999999986 467899999999999996  4689999999999999999876532   34899999999999997 889


Q ss_pred             hHHHHH-hcCCHHHHHHHHhccCCCH--HHHHHHHHHHHHHhc---CCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHH
Q 010019          391 NKSAII-ENGGMDKLIVVSARFSDDA--SVLQEVMSIITVLSL---RSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRS  464 (520)
Q Consensus       391 ~k~~Iv-~~g~l~~Lv~lL~~~~~~~--~v~~~a~~aL~nLa~---~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~  464 (520)
                      ++..|+ ..|+++.|+++|....+..  .++++|+|+|+||+.   +++++++.++++|+++.|+++|+.  ++..++++
T Consensus       321 nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~--~~~~v~~~  398 (458)
T 3nmz_A          321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS--HSLTIVSN  398 (458)
T ss_dssp             HHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC--SCHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC--CChHHHHH
Confidence            999998 7899999999998433221  589999999999997   799999999999999999999965  57889999


Q ss_pred             HHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHh-CcchHHHHHHHHHHcCCCC
Q 010019          465 SCFMIRNLVARNPENRKLLLSNGVEKLIRQAKEN-HEICKDAATDALRDLGLDD  517 (520)
Q Consensus       465 A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~-h~~~~~~a~aALr~Lg~~~  517 (520)
                      |+|+|+||+.++++++..+++.|+.+.|..++.. ++.++..|..||++|.-++
T Consensus       399 A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          399 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            9999999988899999999999999999888754 3567899999999997654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.8e-38  Score=342.95  Aligned_cols=389  Identities=12%  Similarity=0.130  Sum_probs=307.7

Q ss_pred             HhhcCcccCCccccCCCCCC----CCCCcHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 010019           95 LSLQGVDLSGIVKCVPGESS----LKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVAT  170 (520)
Q Consensus        95 f~~qgvdls~i~~~~~~~~~----~~~~~~~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~  170 (520)
                      ++.|..+.+++..+.+....    ........+++.|+..+.|       +|.+.+.+|+..+|++.+. +..+.+..++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~l~s-------~d~~~q~~a~~~~rklls~-e~~ppi~~ii   97 (510)
T 3ul1_B           26 FERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINS-------NNLESQLQATQAARKLLSR-EKQPPIDNII   97 (510)
T ss_dssp             ---------------------------CCSSCCHHHHHHHHTS-------SCHHHHHHHHHHHHHHHTC-SSCCCHHHHH
T ss_pred             HHhhccCCccccCCccccchhhhccccchhhhhHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence            56666666655443222110    0111222358899999988       8999999999999998876 3455688899


Q ss_pred             hcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 010019          171 KNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG  249 (520)
Q Consensus       171 ~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~  249 (520)
                      ++|+||+||++|++.  +++.++..|.++|++++.+. +.+..+++.|++|.|+++|+  +++.++++.|+|+|++++.+
T Consensus        98 ~~G~ip~LV~lL~~~--~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~--s~~~~v~e~A~~aL~nLa~d  173 (510)
T 3ul1_B           98 RAGLIPKFVSFLGKT--DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGD  173 (510)
T ss_dssp             HTTHHHHHHHHTTCT--TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHCCC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhC
Confidence            999999999999865  35677766667776665443 33678899999999999997  46799999999999999998


Q ss_pred             ChhhHHHHHhcCCHHHHHHHHhcCCh-----HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcC
Q 010019          250 NEVVKESYMELKIDELILEILSRQRN-----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAG  324 (520)
Q Consensus       250 ~e~nr~~i~~~g~i~~Lv~lL~~~~~-----~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~  324 (520)
                      ++.+|..+.+.|++++|+.+|.+...     ..+++++|+|++++.+.++...         .....|++|.|+.+|.. 
T Consensus       174 ~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~---------~~~~~~~lp~L~~LL~~-  243 (510)
T 3ul1_B          174 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP---------LDAVEQILPTLVRLLHH-  243 (510)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCC---------HHHHHHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhH---------HHHHHhHHHHHHHHHhc-
Confidence            89999999999999999999987532     6788999999999998776553         22235789999999986 


Q ss_pred             CChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHH
Q 010019          325 LSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMD  402 (520)
Q Consensus       325 ~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~  402 (520)
                      .+.+++.++||+|++|+. .++..+.+++.|+++.|+.+|...    +..++..++++|++|+ +++.++..+++.|+++
T Consensus       244 ~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~----~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~  319 (510)
T 3ul1_B          244 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT----ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA  319 (510)
T ss_dssp             SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred             CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC----ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchH
Confidence            467899999999999995 556677889999999999999862    3589999999999997 5678888999999999


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-ChhhHH
Q 010019          403 KLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENRK  481 (520)
Q Consensus       403 ~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-~~e~~~  481 (520)
                      .|+.+|+  +.++.+++.+||+|+||+.+++++++.+.+.|+++.++.+|..  ++..++++|+|+|+|++.. +++++.
T Consensus       320 ~L~~LL~--~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~Aa~aL~Nl~~~~~~~~~~  395 (510)
T 3ul1_B          320 VFPSLLT--NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK--ADFKTQKEAAWAITNYTSGGTVEQIV  395 (510)
T ss_dssp             GCC-CTT--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHhc--CCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHccCCHHHHH
Confidence            9999998  6789999999999999999999999999999999999999975  6899999999999999864 789999


Q ss_pred             HHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHc
Q 010019          482 LLLSNGVEKLIRQAKENH-EICKDAATDALRDL  513 (520)
Q Consensus       482 ~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~L  513 (520)
                      .+++.|+.+.|..++... +.....+..||+++
T Consensus       396 ~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni  428 (510)
T 3ul1_B          396 YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI  428 (510)
T ss_dssp             HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            999999998888877443 34555666777654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=6.5e-37  Score=332.16  Aligned_cols=361  Identities=12%  Similarity=0.150  Sum_probs=306.3

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      .++.+...+.|       +|.+.+.+++..+|++.+. +..+....+++.|+||.||.+|++.  +++.++..|.++|++
T Consensus        77 ~l~~lv~~l~s-------~d~~~q~~a~~~~rklLs~-~~~~~i~~ii~~G~ip~Lv~lL~~~--~~~~~q~~Aa~aL~n  146 (529)
T 3tpo_A           77 SVEDIVKGINS-------NNLESQLQATQAARKLLSR-EKQPPIDNIIRAGLIPKFVSFLGKT--DCSPIQFESAWALTN  146 (529)
T ss_dssp             CHHHHHHHHTS-------SCHHHHHHHHHHHHHHHTS-SSCCCHHHHHHTTHHHHHHHHHTCT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-------CCHHHHHHHHHHHHHHHcC-CCCchHHHHHHCCCHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence            47788888887       8899999999999998765 2556688899999999999999865  367777777777777


Q ss_pred             hhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-----H
Q 010019          203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-----D  276 (520)
Q Consensus       203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-----~  276 (520)
                      ++.+. +.+..+++.|++|.|+.+|.  +.+.+++..|+|+|++++..++.+|..+++.|++++|+.+|.....     .
T Consensus       147 ia~~~~~~~~~vv~~Gaip~Lv~LL~--s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~  224 (529)
T 3tpo_A          147 IASGTSEQTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG  224 (529)
T ss_dssp             HHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHH
T ss_pred             HHcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHH
Confidence            76544 23578889999999999997  4578999999999999999889999999999999999999986532     6


Q ss_pred             HHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCC
Q 010019          277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGG  355 (520)
Q Consensus       277 ~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Gg  355 (520)
                      .+++++|+|++++.+.++...         .....|++|.|+.+|.. .+++++.++||+|++|+. .++..+.+++.|+
T Consensus       225 ~~~~a~~~L~nl~~~~~~~~~---------~~~~~~~lp~L~~LL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~  294 (529)
T 3tpo_A          225 YLRNLTWTLSNLCRNKNPAPP---------LDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGV  294 (529)
T ss_dssp             HHHHHHHHHHHHHCCCTTCCC---------HHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHhcccchhh---------HHHHhhHHHHHHHHhcC-CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccc
Confidence            788999999999998766553         22235789999999986 467899999999999995 5567788899999


Q ss_pred             hHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHH
Q 010019          356 IDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE  434 (520)
Q Consensus       356 v~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~  434 (520)
                      ++.|+.+|...    +..++..++.+|+||+ +++..+..+++.|+++.|+.+|+  +.++.+++.|||+|+||+.++++
T Consensus       295 i~~Lv~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~--~~~~~i~~~a~~aL~nl~~~~~~  368 (529)
T 3tpo_A          295 VPQLVKLLGAT----ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT--NPKTNIQKEATWTMSNITAGRQD  368 (529)
T ss_dssp             HHHHHHHHTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT--CSSHHHHHHHHHHHHHHHTSCHH
T ss_pred             hHHHHHHhcCC----ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHc--CCCHHHHHHHHHHHHHHhcccHH
Confidence            99999999862    3589999999999997 56788889999999999999998  67899999999999999999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-hChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHH
Q 010019          435 NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA-RNPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRD  512 (520)
Q Consensus       435 ~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~-~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~  512 (520)
                      +...+++.|+++.++.+|..  ++..++++|+|+|.|++. .+++++..+++.|+.+.|..++... +.....+..||.+
T Consensus       369 ~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~n  446 (529)
T 3tpo_A          369 QIQQVVNHGLVPFLVGVLSK--ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN  446 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            99999999999999999975  688999999999999986 4789999999999998888877543 3445566777766


Q ss_pred             c
Q 010019          513 L  513 (520)
Q Consensus       513 L  513 (520)
                      +
T Consensus       447 i  447 (529)
T 3tpo_A          447 I  447 (529)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2.4e-36  Score=337.54  Aligned_cols=365  Identities=13%  Similarity=0.130  Sum_probs=304.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHH-hcCcHHHHHHHHhhcccCcHHHHHHHHH
Q 010019          120 LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVAT-KNGGVELVCSICYKMRCGSKRVLDSCLK  198 (520)
Q Consensus       120 ~~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~-~~Gaip~Lv~lL~~~~~~~~~~~~~al~  198 (520)
                      +...++.|+..+.+.     ..|.+....++..|..++.   ++..|..++ +.|+||.|+++|++.   +..++..|++
T Consensus       375 i~~Lv~~l~~lL~~~-----~~d~~v~~~AveaLayLS~---~~~vk~~lv~d~g~Ip~LV~LL~s~---d~~i~~~al~  443 (810)
T 3now_A          375 ALKLAEACRRFLIKP-----GKDKDIRRWAADGLAYLTL---DAECKEKLIEDKASIHALMDLARGG---NQSCLYGVVT  443 (810)
T ss_dssp             HHHHHHHHHHHHHCS-----SCCSSHHHHHHHHHHHHTT---SHHHHHHHHHCHHHHHHHHHHHHTT---CGGGHHHHHH
T ss_pred             HHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHHHhC---CcHHHHHHHHccchHHHHHHHhCCC---ChHHHHHHHH
Confidence            445677888888771     1267788899999999998   566666666 589999999999974   6678888888


Q ss_pred             HHHHhhccccc------------------------------c---hhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHH
Q 010019          199 TMALLVHDVQS------------------------------T---ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAA  245 (520)
Q Consensus       199 ~La~l~~~~~~------------------------------~---~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~  245 (520)
                      +|++++.+.+.                              +   ..++++|++|.|+.+|++  +++++++.++|+|+|
T Consensus       444 ~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s--~s~~vqe~Aa~aL~N  521 (810)
T 3now_A          444 TFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT--ESHNSQELIARVLNA  521 (810)
T ss_dssp             HHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC--CCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC--CCHHHHHHHHHHHHH
Confidence            88888865421                              1   567789999999999984  579999999999999


Q ss_pred             HhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC
Q 010019          246 SATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL  325 (520)
Q Consensus       246 ~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~  325 (520)
                      ++. ++++|..+++.|++++|+.+|++++...+++|+|+|.+|+...++...|+.     ..  ..|++|+|+.+|....
T Consensus       522 LA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~-----~~--~~~aIppLv~LL~~~~  593 (810)
T 3now_A          522 VCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSG-----QR--SLDVIRPLLNLLQQDC  593 (810)
T ss_dssp             HHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTT-----HH--HHHTHHHHHHTTSTTS
T ss_pred             HcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcc-----hh--hhcHHHHHHHHhCCCC
Confidence            985 577999999999999999999998778899999999999987665543321     01  1369999999997533


Q ss_pred             ChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHh-cCCHHH
Q 010019          326 SSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIE-NGGMDK  403 (520)
Q Consensus       326 ~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~-~g~l~~  403 (520)
                      +...+.+++++|+||+. ++++++.|++.||++.|+.+|.+..    ..++++|+++|+||+.+++.+..+++ .|+++.
T Consensus       594 ~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~----~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~  669 (810)
T 3now_A          594 TALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH----LYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKF  669 (810)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC----TTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC----HHHHHHHHHHHHHHhCChHHHHHHHhccCcHHH
Confidence            33345689999999995 4789999999999999999998632    26999999999999999888888885 789999


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh-cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHH
Q 010019          404 LIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME-AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKL  482 (520)
Q Consensus       404 Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~-~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~  482 (520)
                      |+.+|.  +++..+++.|||+|+||+.+++++++.+++ .|+++.|+++|..  ++.++|+.|+|+|.|++..++++...
T Consensus       670 Lv~LL~--s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s--~d~~vq~~A~~aL~NL~~~s~e~~~~  745 (810)
T 3now_A          670 LALLCE--DEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN--PSPAVQHRGIVIILNMINAGEEIAKK  745 (810)
T ss_dssp             HHHGGG--CSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC--SSHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHhc--CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC--CCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            999998  678999999999999999888999999999 8999999999954  78999999999999998888999999


Q ss_pred             HHhCCHHHHHHHHHHhC----cchHHHHHHHHHHc
Q 010019          483 LLSNGVEKLIRQAKENH----EICKDAATDALRDL  513 (520)
Q Consensus       483 l~~~G~~~lL~~~~~~h----~~~~~~a~aALr~L  513 (520)
                      +++.|+.+.|..++..+    +....+|..||..+
T Consensus       746 l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~l  780 (810)
T 3now_A          746 LFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA  780 (810)
T ss_dssp             HHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHH
Confidence            99999999999887655    24556777887764

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=314.60  Aligned_cols=324  Identities=13%  Similarity=0.125  Sum_probs=271.0

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcH----------HHHHHHHhhcc-cCc------H----HHHHHHHHH
Q 010019          141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGV----------ELVCSICYKMR-CGS------K----RVLDSCLKT  199 (520)
Q Consensus       141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gai----------p~Lv~lL~~~~-~~~------~----~~~~~al~~  199 (520)
                      ++++.+.+|+..|.++...  .++......+.|++          +.+++++++.+ .++      +    ..+++|+++
T Consensus        94 ~~~~~~~~a~~al~ni~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~a  171 (458)
T 3nmz_A           94 GSKEARARASAALHNIIHS--QPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCV  171 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHH--SCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcc--CcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHH
Confidence            4578999999999999997  67777777888888          77777787652 111      0    224578888


Q ss_pred             HHHhhcccccchhHHhcCCcHHHHHHHhcC---------CCChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCHHHHHHH
Q 010019          200 MALLVHDVQSTETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEI  269 (520)
Q Consensus       200 La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~-g~i~~Lv~l  269 (520)
                      |.++..+.+.|..+++.|++++|+++|...         ..++.++..|+|+|.++|..++.+|..+... |+||.|+.+
T Consensus       172 L~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~L  251 (458)
T 3nmz_A          172 LMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ  251 (458)
T ss_dssp             HHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHG
T ss_pred             HHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHH
Confidence            888876666789999999999999999531         1346789999999999998887788888754 569999999


Q ss_pred             HhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHH
Q 010019          270 LSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICK  348 (520)
Q Consensus       270 L~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~  348 (520)
                      |++.+.+++..|+|+|++|+..++.        ++...|++.|++|+|+++|....+..+++.++.+||||+. +++++.
T Consensus       252 L~s~~~~v~~~A~~aL~nLs~~~~~--------~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~  323 (458)
T 3nmz_A          252 LKSESEDLQQVIASVLRNLSWRADV--------NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA  323 (458)
T ss_dssp             GGCSCHHHHHHHHHHHHHHTSSCCH--------HHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHhcCCCH--------HHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence            9987779999999999999985321        1233677999999999987655567889999999999997 889999


Q ss_pred             HHH-hcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh----CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHH
Q 010019          349 SVA-ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA----GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMS  423 (520)
Q Consensus       349 ~i~-~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La----~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~  423 (520)
                      .|+ ..|+++.|+.+|....+....++++.|+++|+||+    ++++++..|+++|+++.|+.+|+  +++..++++|+|
T Consensus       324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~--~~~~~v~~~A~~  401 (458)
T 3nmz_A          324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK--SHSLTIVSNACG  401 (458)
T ss_dssp             HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSS--CSCHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHc--CCChHHHHHHHH
Confidence            998 89999999999986433211258999999999998    58999999999999999999998  668999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChh
Q 010019          424 IITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE  478 (520)
Q Consensus       424 aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e  478 (520)
                      +|+||+.+++++++.+++.|+++.|+++|..  ++..+++.|+|+|+||+.++|+
T Consensus       402 aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s--~~~~v~~~Aa~AL~nL~~~~p~  454 (458)
T 3nmz_A          402 TLWNLSARNPKDQEALWDMGAVSMLKNLIHS--KHKMIAMGSAAALRNLMANRPA  454 (458)
T ss_dssp             HHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTCCSC
T ss_pred             HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCHh
Confidence            9999998899999999999999999999953  6899999999999999887764

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=3.5e-34  Score=310.44  Aligned_cols=361  Identities=11%  Similarity=0.084  Sum_probs=291.1

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      .+..|...+.+       ++.+.+.+|+..|+.+|..  +.++|..+++.|+||+||++|++.   +..++..|.++|.+
T Consensus        49 ~i~~LV~~L~s-------~~~~~q~~Aa~~L~~La~~--~~~~k~~V~~~G~Ip~LV~LL~s~---~~~vq~~Aa~AL~n  116 (584)
T 3l6x_A           49 ELPEVIAMLGF-------RLDAVKSNAAAYLQHLCYR--NDKVKTDVRKLKGIPVLVGLLDHP---KKEVHLGACGALKN  116 (584)
T ss_dssp             CHHHHHHHTTC-------SCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHGGGCS---SHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHCC-------CCHHHHHHHHHHHHHHHcC--ChHHHHHHHHcCCcHHHHHHHCCC---CHHHHHHHHHHHHH
Confidence            36677778777       6788899999999999987  899999999999999999999984   78899889999999


Q ss_pred             hhcc--cccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhc--------
Q 010019          203 LVHD--VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR--------  272 (520)
Q Consensus       203 l~~~--~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~--------  272 (520)
                      ++.+  .+++..++++|||+.|+++|++. .+.++++.++++|.+++. ++.+|..|++ +++++|+++|..        
T Consensus       117 La~~~~~~nk~~I~~~GaIp~LV~LL~s~-~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~  193 (584)
T 3l6x_A          117 ISFGRDQDNKIAIKNCDGVPALVRLLRKA-RDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWERE  193 (584)
T ss_dssp             HTSSSCHHHHHHHHHTTHHHHHHHHHHHC-CSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC--
T ss_pred             HHccCCHHHHHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccc
Confidence            8863  46689999999999999999863 357899999999999976 7889999996 579999998721        


Q ss_pred             --------C--ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHc-CCHHHHHHHHhcC-----CChhHHHHHHHH
Q 010019          273 --------Q--RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-GIARALVHSLHAG-----LSSPSLISASIA  336 (520)
Q Consensus       273 --------~--~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~-g~l~~Lv~lL~~~-----~~~~~~~~a~~a  336 (520)
                              +  +..++.+|+++|+||+.++++         +.+.|.+. |++++|+.+|+..     .+...+++++++
T Consensus       194 ~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~---------~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~a  264 (584)
T 3l6x_A          194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSE---------ARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCL  264 (584)
T ss_dssp             --------CCCCHHHHHHHHHHHHHHTSSCHH---------HHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHH
T ss_pred             ccccccccccccHHHHHHHHHHHHHHhcCCHH---------HHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHH
Confidence                    1  238889999999999986532         12366765 5568999999853     345688999999


Q ss_pred             HHHhccChhh--------------------------HHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCC-
Q 010019          337 LKAVAVNDEI--------------------------CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD-  389 (520)
Q Consensus       337 L~~La~~~e~--------------------------~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~-  389 (520)
                      |+||+..-+.                          ...+.+.++++.|+.+|..+.   +..++++|+++|+||+.+. 
T Consensus       265 L~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~---~~~v~E~Aa~AL~nL~ag~~  341 (584)
T 3l6x_A          265 LRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK---TPAILEASAGAIQNLCAGRW  341 (584)
T ss_dssp             HHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHSSCS
T ss_pred             HHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCC---CHHHHHHHHHHHHHHHcCCc
Confidence            9999954210                          111223344567888997642   3589999999999997442 


Q ss_pred             ----chHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCC------CH
Q 010019          390 ----SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPN------AQ  459 (520)
Q Consensus       390 ----~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~------~~  459 (520)
                          .++..|.+.||+|.|+++|.  ++++.+++.+||+|+||+. ++.++..| +.|+++.|+++|.....      ..
T Consensus       342 ~~~~~~~~~v~~~~glp~Lv~LL~--s~~~~v~~~A~~aL~nLs~-~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~  417 (584)
T 3l6x_A          342 TYGRYIRSALRQEKALSAIADLLT--NEHERVVKAASGALRNLAV-DARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSE  417 (584)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHT-TCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCH
T ss_pred             cccHHHHHHHHHcCcHHHHHHHHc--CCCHHHHHHHHHHHHHHhC-ChhHHHHH-HhCCHHHHHHHhcCCcccccccchH
Confidence                34456667899999999998  7789999999999999996 55666555 78999999999964311      46


Q ss_pred             HHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC---cchHHHHHHHHHHcC
Q 010019          460 QLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH---EICKDAATDALRDLG  514 (520)
Q Consensus       460 ~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h---~~~~~~a~aALr~Lg  514 (520)
                      .++..||++|.||++++++++..+++.|+.+.|..++..+   +....+|..+|++|-
T Consensus       418 ~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~  475 (584)
T 3l6x_A          418 DTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW  475 (584)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999999998774   356777888888874

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=5.7e-34  Score=303.72  Aligned_cols=362  Identities=14%  Similarity=0.146  Sum_probs=291.1

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Q 010019          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (520)
Q Consensus       124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l  203 (520)
                      +..|...+.+       ++.+.+..|+..|+++|..  ++..+..+++.|+||.|+++|++.   ++.++..|.++|.++
T Consensus         4 l~~lv~~L~s-------~~~~~q~~A~~~L~~l~~~--~~~~~~~i~~~g~i~~Lv~lL~s~---~~~~~~~A~~aL~nL   71 (457)
T 1xm9_A            4 IPKAVQYLSS-------QDEKYQAIGAYYIQHTCFQ--DESAKQQVYQLGGICKLVDLLRSP---NQNVQQAAAGALRNL   71 (457)
T ss_dssp             HHHHHHHHHS-------SCTHHHHHHHHHHHHHTSS--CSSHHHHHHHTTHHHHHHHHTTSS---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCC-------CCHHHHHHHHHHHHHHHcC--ChHHHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHH
Confidence            5667777777       6778899999999999986  777888999999999999999974   778888888888888


Q ss_pred             hcc-cccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHh--------cC-
Q 010019          204 VHD-VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS--------RQ-  273 (520)
Q Consensus       204 ~~~-~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~--------~~-  273 (520)
                      +.+ .+.+..++++||+|.|+++|+. +++.++++.++|+|.+++.. +.+|..+++ |++++|+++|.        +. 
T Consensus        72 a~~~~~~k~~i~~~G~i~~Lv~lL~~-~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~  148 (457)
T 1xm9_A           72 VFRSTTNKLETRRQNGIREAVSLLRR-TGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNS  148 (457)
T ss_dssp             HSSCHHHHHHHHHTTCHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC----
T ss_pred             hcCCHHHHHHHHHcCCHHHHHHHHhh-CCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCcc
Confidence            765 4568889999999999999973 34789999999999999976 789999999 99999999993        22 


Q ss_pred             -------ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHc-CCHHHHHHHHhcC-----CChhHHHHHHHHHHHh
Q 010019          274 -------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-GIARALVHSLHAG-----LSSPSLISASIALKAV  340 (520)
Q Consensus       274 -------~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~-g~l~~Lv~lL~~~-----~~~~~~~~a~~aL~~L  340 (520)
                             ..+++++|+|+|+|||.++++          .+.+.+. |++++|+.+|+.+     .+..++.+++++|++|
T Consensus       149 ~~~~e~~~~~v~~~a~~aL~nLs~~~~~----------~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL  218 (457)
T 1xm9_A          149 NMSREVVDPEVFFNATGCLRNLSSADAG----------RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL  218 (457)
T ss_dssp             -----CCCHHHHHHHHHHHHHHTTSHHH----------HHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHH
T ss_pred             chhcccccHHHHHHHHHHHHHHccCHHH----------HHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhc
Confidence                   226777999999999986332          3366677 9999999999862     3445778889999998


Q ss_pred             ccC---------------------------------------------------hhhHHHHHhcCChHHHHHHHhccCCC
Q 010019          341 AVN---------------------------------------------------DEICKSVAENGGIDALLRCIDDSGLQ  369 (520)
Q Consensus       341 a~~---------------------------------------------------~e~~~~i~~~Ggv~~Ll~lL~~~~~~  369 (520)
                      +..                                                   ++..+.+.+.|+++.|+.+|....  
T Consensus       219 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~--  296 (457)
T 1xm9_A          219 SYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK--  296 (457)
T ss_dssp             TTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC--
T ss_pred             ccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcC--
Confidence            621                                                   112234567788999999998742  


Q ss_pred             CcHHHHHHHHHHHHHhhCCC-ch-----HHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010019          370 GNKTVARICCSLLSKLAGSD-SN-----KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG  443 (520)
Q Consensus       370 ~~~~v~~~al~aL~~La~~~-~~-----k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G  443 (520)
                       ++.+++.|+++|+||+... ..     +..|.++||+|.|+++|.  +++..+++.|+|+|+||+. ++++...+ ..|
T Consensus       297 -~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~--~~~~~v~~~A~~aL~nls~-~~~~~~~i-~~~  371 (457)
T 1xm9_A          297 -KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ--SGNSDVVRSGASLLSNMSR-HPLLHRVM-GNQ  371 (457)
T ss_dssp             -CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT--CSCHHHHHHHHHHHHHHHT-SGGGHHHH-HHH
T ss_pred             -CHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHh--CCCHhHHHHHHHHHHHHhc-CHHHHHHH-HHh
Confidence             3589999999999998543 32     233457899999999998  7789999999999999996 66665544 568


Q ss_pred             cHHHHHHHHHhCCC----CHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC--cchHHHHHHHHHHcCCCC
Q 010019          444 SGDLAIQAMLKFPN----AQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH--EICKDAATDALRDLGLDD  517 (520)
Q Consensus       444 ~i~~lv~~L~~~~~----~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h--~~~~~~a~aALr~Lg~~~  517 (520)
                      +++.|+++|.....    +.+++..++++|.|+..+++++...+.+.|+.+.|..++...  +.....|...|.++-.+-
T Consensus       372 ~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             THHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             hhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence            99999999975322    257888999999999988999999999999999888887654  356777888888876544

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.8e-32  Score=296.29  Aligned_cols=361  Identities=12%  Similarity=0.112  Sum_probs=305.9

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHH
Q 010019          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (520)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La  201 (520)
                      ..+..|...+.+       +|.+.+..|+..|+++++. ...+++..+++.|++|.|+++|++.  +++.++..|+++|+
T Consensus        74 ~~l~~lv~~L~s-------~~~~~~~~A~~~L~~l~s~-~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~v~~~A~~~L~  143 (528)
T 4b8j_A           74 ESLPAMIGGVYS-------DDNNLQLEATTQFRKLLSI-ERSPPIEEVIQSGVVPRFVQFLTRE--DFPQLQFEAAWALT  143 (528)
T ss_dssp             -CHHHHHHHHTS-------SCHHHHHHHHHHHHHHHTC-SSSCCHHHHHHTTCHHHHHHHHTCT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-------CCHHHHHHHHHHHHHHhcC-CCCchHHHHHHCCCHHHHHHHhCCC--CCHHHHHHHHHHHH
Confidence            347778888876       6888899999999999875 2336788899999999999999874  23788888888888


Q ss_pred             Hhhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcC-ChHHHH
Q 010019          202 LLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-RNDSIQ  279 (520)
Q Consensus       202 ~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~-~~~~~~  279 (520)
                      +++.+. +.+..+++.|+++.|+.+|.+  .+.+++..++|+|++++..++.+|..+.+.|+++.|+.+|... +..++.
T Consensus       144 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~  221 (528)
T 4b8j_A          144 NIASGTSENTKVVIDHGAVPIFVKLLGS--SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR  221 (528)
T ss_dssp             HHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHH
T ss_pred             HHhCCCHHHHHHHHhCCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHH
Confidence            887653 346778889999999999985  5789999999999999988888999999999999999999544 458889


Q ss_pred             HHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC-hhhHHHHHhcCChHH
Q 010019          280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDA  358 (520)
Q Consensus       280 ~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~-~e~~~~i~~~Ggv~~  358 (520)
                      .++|+|++|+.......          .....|+++.|+.+|.. .++.++..++++|++|+.. ++..+.+++.|+++.
T Consensus       222 ~a~~~L~~L~~~~~~~~----------~~~~~~~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~  290 (528)
T 4b8j_A          222 NATWTLSNFCRGKPQPS----------FEQTRPALPALARLIHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  290 (528)
T ss_dssp             HHHHHHHHHHCSSSCCC----------HHHHTTHHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHcCCCCCc----------HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHH
Confidence            99999999998753322          33457999999999975 4688999999999999954 455678899999999


Q ss_pred             HHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCC-CHHHHHHHHHHHHHHhcCCHHHH
Q 010019          359 LLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSD-DASVLQEVMSIITVLSLRSPENA  436 (520)
Q Consensus       359 Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~-~~~v~~~a~~aL~nLa~~~~~~~  436 (520)
                      |+.+|...    +..++..|+++|++|+. ++..+..+++.|+++.|+.+|.  +. ++.+++.|||+|.||+.++++..
T Consensus       291 Lv~lL~~~----~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~~v~~~A~~~L~nl~~~~~~~~  364 (528)
T 4b8j_A          291 LVELLLHP----SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT--QNLKKSIKKEACWTISNITAGNKDQI  364 (528)
T ss_dssp             HHHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHcCC----ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc--CCCcHHHHHHHHHHHHHHHCCCHHHH
Confidence            99999863    25899999999999985 6677888999999999999998  55 89999999999999999899999


Q ss_pred             HHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHc
Q 010019          437 ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRDL  513 (520)
Q Consensus       437 ~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~L  513 (520)
                      ..+++.|+++.|+.+|..  +++.+++.|+|+|.|++.. +++++..+++.|+.+.|..++... +.....+..+|.+|
T Consensus       365 ~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l  441 (528)
T 4b8j_A          365 QAVINAGIIGPLVNLLQT--AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENI  441 (528)
T ss_dssp             HHHHHTTCHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            999999999999999976  4889999999999999876 799999999999998888877553 34566677777765

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.6e-33  Score=305.36  Aligned_cols=350  Identities=12%  Similarity=0.097  Sum_probs=280.8

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      +|..|+..+.+       ++.+.+..|+..|++++.. .+.++|..|+++|+||+|+.+|++.  .+.+++..+..+|.+
T Consensus        91 ~Ip~LV~LL~s-------~~~~vq~~Aa~AL~nLa~~-~~~~nk~~I~~~GaIp~LV~LL~s~--~~~~~~e~aa~aL~n  160 (584)
T 3l6x_A           91 GIPVLVGLLDH-------PKKEVHLGACGALKNISFG-RDQDNKIAIKNCDGVPALVRLLRKA--RDMDLTEVITGTLWN  160 (584)
T ss_dssp             HHHHHHHGGGC-------SSHHHHHHHHHHHHHHTSS-SCHHHHHHHHHTTHHHHHHHHHHHC--CSHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHCC-------CCHHHHHHHHHHHHHHHcc-CCHHHHHHHHHcCCHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence            68899999988       7889999999999999983 2589999999999999999999974  255666666666666


Q ss_pred             hhcccccchhHHhcCCcHHHHHHHh----------------cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCHHH
Q 010019          203 LVHDVQSTETFRTGGGPKLLVNILI----------------DGNEDPEILNSGFAVVAASATGNEVVKESYMEL-KIDEL  265 (520)
Q Consensus       203 l~~~~~~~~~i~~~ggi~~Lv~lL~----------------~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~-g~i~~  265 (520)
                      |....+.+..++. +|++.|+++|.                ++..+.+++..|.++|+|++..++++|+.+++. |+++.
T Consensus       161 LS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~  239 (584)
T 3l6x_A          161 LSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDA  239 (584)
T ss_dssp             HTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHH
T ss_pred             HhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHH
Confidence            6555555777874 68999999872                123467999999999999998888889999986 56789


Q ss_pred             HHHHHhcC------ChHHHHHHHHHHHHhcCCCCcchh----hh------------hhchHHHHHHHcCCHHHHHHHHhc
Q 010019          266 ILEILSRQ------RNDSIQSLYDAIRVLLTPDDDQVV----AS------------QVYGYARRFAKIGIARALVHSLHA  323 (520)
Q Consensus       266 Lv~lL~~~------~~~~~~~a~~aL~~Ls~~dd~~v~----~~------------~a~~~a~~i~~~g~l~~Lv~lL~~  323 (520)
                      |+.+|++.      +...+++|+++|+|||...+..++    +-            ........+...+++++|+.+|+.
T Consensus       240 LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~  319 (584)
T 3l6x_A          240 LIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE  319 (584)
T ss_dssp             HHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHcc
Confidence            99999862      348899999999999976321110    00            000111123334567889999987


Q ss_pred             CCChhHHHHHHHHHHHhccCh-----hhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhc
Q 010019          324 GLSSPSLISASIALKAVAVND-----EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIEN  398 (520)
Q Consensus       324 ~~~~~~~~~a~~aL~~La~~~-----e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~  398 (520)
                      +.+..+++.|++||+||+...     .++..+.+.||++.|+++|...    +..+++.++++|+||+.++.++..| ..
T Consensus       320 s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~----~~~v~~~A~~aL~nLs~~~~~~~~I-~~  394 (584)
T 3l6x_A          320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE----HERVVKAASGALRNLAVDARNKELI-GK  394 (584)
T ss_dssp             CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS----CHHHHHHHHHHHHHHHTTCSCHHHH-HH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC----CHHHHHHHHHHHHHHhCChhHHHHH-Hh
Confidence            667889999999999998542     3445666789999999999863    2489999999999999988888877 67


Q ss_pred             CCHHHHHHHHhccCC------CHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010019          399 GGMDKLIVVSARFSD------DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL  472 (520)
Q Consensus       399 g~l~~Lv~lL~~~~~------~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL  472 (520)
                      |++|.||++|.....      +..++..+|++|.||+.+++++++.++++|+++.|+.+++.++..+.+++.|+|+|+||
T Consensus       395 g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl  474 (584)
T 3l6x_A          395 HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI  474 (584)
T ss_dssp             HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence            999999999973211      47889999999999999999999999999999999999987555789999999999999


Q ss_pred             hhhChhhHHHHHhCCHH
Q 010019          473 VARNPENRKLLLSNGVE  489 (520)
Q Consensus       473 ~~~~~e~~~~l~~~G~~  489 (520)
                       +.+++++..+.+.|..
T Consensus       475 -~~~~elr~~~kk~G~~  490 (584)
T 3l6x_A          475 -WGYKELRKPLEKEGWK  490 (584)
T ss_dssp             -HTSHHHHHHHHTTTCC
T ss_pred             -HcCHHHHHHHHHcCCC
Confidence             5689999999988764

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=6.9e-34  Score=292.64  Aligned_cols=278  Identities=14%  Similarity=0.178  Sum_probs=237.0

Q ss_pred             HHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcC---------CCChHHHHHHHHHHHHHhcCChhhHHHHHhc-
Q 010019          191 RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYMEL-  260 (520)
Q Consensus       191 ~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~-  260 (520)
                      ..++.|+++|..+..+.+.|..+++.||++.|+++|...         ..+++++..|+|+|.++|..++.+|..+... 
T Consensus        47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~  126 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK  126 (354)
T ss_dssp             GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            446677888888877767789999999999999999631         1246899999999999998888899888755 


Q ss_pred             CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010019          261 KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV  340 (520)
Q Consensus       261 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~L  340 (520)
                      |+||.|+.+|++.+.++++.|+|+|++|+..++.        ++...+++.|+||+|+++|.+..+.++++.++++|++|
T Consensus       127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~--------~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nL  198 (354)
T 3nmw_A          127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADV--------NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL  198 (354)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCH--------HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCH--------HHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            5599999999987779999999999999985321        12336779999999999876555678899999999999


Q ss_pred             cc-ChhhHHHHH-hcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh----CCCchHHHHHhcCCHHHHHHHHhccCCC
Q 010019          341 AV-NDEICKSVA-ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA----GSDSNKSAIIENGGMDKLIVVSARFSDD  414 (520)
Q Consensus       341 a~-~~e~~~~i~-~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La----~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~  414 (520)
                      +. +++++..|+ ..|+++.|+++|....+....++++.|+++|+||+    ++++++..++++|+++.|+++|+  +++
T Consensus       199 s~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~--~~~  276 (354)
T 3nmw_A          199 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK--SHS  276 (354)
T ss_dssp             HTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT--CSC
T ss_pred             HccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc--CCC
Confidence            97 778998988 79999999999986432211258999999999998    48999999999999999999998  678


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhH
Q 010019          415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENR  480 (520)
Q Consensus       415 ~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~  480 (520)
                      ..++++|+++|+||+.+++++++.+++.|+++.|+++|..  ++..++++|+|+|+||+..+++..
T Consensus       277 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s--~~~~i~~~A~~aL~nL~~~~~~~~  340 (354)
T 3nmw_A          277 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS--KHKMIAMGSAAALRNLMANRPAKY  340 (354)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999998899999999999999999999954  688999999999999988776653

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=2.9e-32  Score=290.51  Aligned_cols=301  Identities=10%  Similarity=0.090  Sum_probs=245.4

Q ss_pred             cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccccc-chhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 010019          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV  252 (520)
Q Consensus       174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~  252 (520)
                      .+|.|+.+|++.   +.+++..|+.+|..++.+++. +..+++.|++|.|+++|++  ++++++..|+++|++++..+++
T Consensus         3 ~l~~lv~~L~s~---~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~~~~   77 (457)
T 1xm9_A            3 TIPKAVQYLSSQ---DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS--PNQNVQQAAAGALRNLVFRSTT   77 (457)
T ss_dssp             CHHHHHHHHHSS---CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS--SCHHHHHHHHHHHHHHHSSCHH
T ss_pred             CHHHHHHHHCCC---CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCHH
Confidence            589999999985   667888899999988765543 6689999999999999984  6789999999999999988799


Q ss_pred             hHHHHHhcCCHHHHHHHHh-cCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHh--------c
Q 010019          253 VKESYMELKIDELILEILS-RQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH--------A  323 (520)
Q Consensus       253 nr~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~--------~  323 (520)
                      +|..+++.|++++|+++|+ +++.+++..++|+|+||+.+++++.          .+++ |++|+|+.+|.        +
T Consensus        78 ~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~----------~i~~-g~i~~Lv~ll~~~~s~~~~~  146 (457)
T 1xm9_A           78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE----------ELIA-DALPVLADRVIIPFSGWCDG  146 (457)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH----------HHHH-HHHHHHHHHTTHHHHTCC--
T ss_pred             HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH----------HHHh-ccHHHHHHHHhccccccccC
Confidence            9999999999999999999 6566999999999999999876654          6778 99999999993        2


Q ss_pred             C-------CChhHHHHHHHHHHHhccChhhHHHHHhc-CChHHHHHHHhcc-----CCCCcHHHHHHHHHHHHHhhC---
Q 010019          324 G-------LSSPSLISASIALKAVAVNDEICKSVAEN-GGIDALLRCIDDS-----GLQGNKTVARICCSLLSKLAG---  387 (520)
Q Consensus       324 ~-------~~~~~~~~a~~aL~~La~~~e~~~~i~~~-Ggv~~Ll~lL~~~-----~~~~~~~v~~~al~aL~~La~---  387 (520)
                      .       .+..++++++|+|+||+.++++++.+++. |+++.|+.+|...     .+.   .+++.|+.+|++|+.   
T Consensus       147 ~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~---~~~e~a~~~L~nLs~~~~  223 (457)
T 1xm9_A          147 NSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDD---KSVENCMCVLHNLSYRLD  223 (457)
T ss_dssp             -------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTC---TTHHHHHHHHHHHTTTHH
T ss_pred             ccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCch---HHHHHHHHHHHhcccchh
Confidence            1       23567789999999999889999999998 9999999999852     222   578899999999862   


Q ss_pred             ------------------------------------------------CCchHHHHHhcCCHHHHHHHHhccCCCHHHHH
Q 010019          388 ------------------------------------------------SDSNKSAIIENGGMDKLIVVSARFSDDASVLQ  419 (520)
Q Consensus       388 ------------------------------------------------~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~  419 (520)
                                                                      ++...+.+.+.|+++.|+.+|.. ++++.+++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~~~~e  302 (457)
T 1xm9_A          224 AEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK-SKKDATLE  302 (457)
T ss_dssp             HHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH-CCCHHHHH
T ss_pred             ccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh-cCCHHHHH
Confidence                                                            12233456677889999999974 56799999


Q ss_pred             HHHHHHHHHhcCCHH----HHHHHH-hcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHH
Q 010019          420 EVMSIITVLSLRSPE----NAARAM-EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQ  494 (520)
Q Consensus       420 ~a~~aL~nLa~~~~~----~~~~i~-~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~  494 (520)
                      .|+|+|+|||.++..    ..+.++ ++|+++.|+++|..  ++..++++|||+|+||+ .+++++..+.+.+ .+.|..
T Consensus       303 ~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~--~~~~v~~~A~~aL~nls-~~~~~~~~i~~~~-i~~Lv~  378 (457)
T 1xm9_A          303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS--GNSDVVRSGASLLSNMS-RHPLLHRVMGNQV-FPEVTR  378 (457)
T ss_dssp             HHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTC--SCHHHHHHHHHHHHHHH-TSGGGHHHHHHHT-HHHHHH
T ss_pred             HHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhC--CCHhHHHHHHHHHHHHh-cCHHHHHHHHHhh-hHHHHH
Confidence            999999999986543    223344 68999999999954  68999999999999995 5677777666544 444445


Q ss_pred             HHHh
Q 010019          495 AKEN  498 (520)
Q Consensus       495 ~~~~  498 (520)
                      .+..
T Consensus       379 lL~~  382 (457)
T 1xm9_A          379 LLTS  382 (457)
T ss_dssp             TTTS
T ss_pred             hccC
Confidence            5543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=6.6e-31  Score=284.48  Aligned_cols=361  Identities=13%  Similarity=0.144  Sum_probs=305.4

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      .+..|...+.+       ++.+.+..|+..|+++++. .+.+++..+++.|++|.|+++|++.  .+..++..|+++|+.
T Consensus        88 ~i~~lv~~L~s-------~~~~~~~~A~~~L~~ll~~-~~~~~~~~~~~~g~i~~Lv~~L~~~--~~~~v~~~A~~~L~~  157 (530)
T 1wa5_B           88 ELPQMTQQLNS-------DDMQEQLSATVKFRQILSR-EHRPPIDVVIQAGVVPRLVEFMREN--QPEMLQLEAAWALTN  157 (530)
T ss_dssp             CHHHHHHHHSC-------SSHHHHHHHHHHHHHHTCC-SSSCSHHHHHHTTCHHHHHHTTSTT--SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-------CCHHHHHHHHHHHHHHhCC-CCCccHHHHHHCCCHHHHHHHhCCC--CCHHHHHHHHHHHHH
Confidence            36677777776       6788899999999999875 2355677888999999999999874  267888888888888


Q ss_pred             hhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHH
Q 010019          203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL  281 (520)
Q Consensus       203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a  281 (520)
                      ++.+. +.+..++..|+++.|+++|++  .+.+++..|+|+|++++..++.++..+...|+++.|+.+|.+.+.+++..|
T Consensus       158 l~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a  235 (530)
T 1wa5_B          158 IASGTSAQTKVVVDADAVPLFIQLLYT--GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTA  235 (530)
T ss_dssp             HTTSCHHHHHHHHHTTCHHHHHHHHHH--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHH
T ss_pred             HhCCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHH
Confidence            87643 235677789999999999985  578999999999999998888899999999999999999998666899999


Q ss_pred             HHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHH
Q 010019          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALL  360 (520)
Q Consensus       282 ~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll  360 (520)
                      +|+|++|+.++++...         .....|+++.|+.+|.. .++.++..++++|++|+. .++.++.+++.|+++.|+
T Consensus       236 ~~~L~~L~~~~~~~~~---------~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv  305 (530)
T 1wa5_B          236 TWTLSNLCRGKKPQPD---------WSVVSQALPTLAKLIYS-MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV  305 (530)
T ss_dssp             HHHHHHHHCCSSSCCC---------HHHHGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhCCCCCCCc---------HHHHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHH
Confidence            9999999987633321         34457899999999975 467899999999999995 567788899999999999


Q ss_pred             HHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Q 010019          361 RCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA  439 (520)
Q Consensus       361 ~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i  439 (520)
                      .+|.+.    +..++..|+++|++|+. ++.....+++.|+++.|+.+|.  ++++.+++.|+++|.+|+..++++.+.+
T Consensus       306 ~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~vr~~A~~aL~~l~~~~~~~~~~~  379 (530)
T 1wa5_B          306 ELLSHE----STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS--SPKENIKKEACWTISNITAGNTEQIQAV  379 (530)
T ss_dssp             HGGGCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHCCC----ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999852    35899999999999984 5677778889999999999998  5689999999999999999899999999


Q ss_pred             HhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-Ch--hhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHc
Q 010019          440 MEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NP--ENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRDL  513 (520)
Q Consensus       440 ~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-~~--e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~L  513 (520)
                      ++.|+++.|+.+|..  +++.+++.|+|+|.|++.. ++  +....+++.|+.+.|..++... +.....+..||.+|
T Consensus       380 ~~~~~l~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l  455 (530)
T 1wa5_B          380 IDANLIPPLVKLLEV--AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI  455 (530)
T ss_dssp             HHTTCHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            999999999999976  5789999999999999875 45  8899999999998888877543 45666777777765

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=3.7e-31  Score=295.77  Aligned_cols=369  Identities=15%  Similarity=0.103  Sum_probs=293.9

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      ++..|...+.+       .+...+.+|+..|...|.   ++.+|..+.+.|+ |+|+.++++.   +..++.||+.+|+.
T Consensus       291 ~v~~li~Ll~s-------~~~~~q~~A~~al~~aa~---~~~~R~~I~~~gv-~~L~~Ll~s~---~~~vr~~Al~~L~k  356 (810)
T 3now_A          291 ILQMILAMATT-------DDELQQRVACECLIAASS---KKDKAKALCEQGV-DILKRLYHSK---NDGIRVRALVGLCK  356 (810)
T ss_dssp             HHHHHHHHHHS-------SCHHHHHHHHHHHHHHTT---SHHHHHTTHHHHH-HHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCC-------CCHHHHHHHHHHHHHHcC---CcHHHHHHHHcCc-HHHHHHHcCC---CHHHHHHHHHHHHH
Confidence            57788888887       677788899999999887   7889999999986 9999999864   56788899999988


Q ss_pred             hhccc--ccchhHHhcCCc----HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH-hcCCHHHHHHHHhcCCh
Q 010019          203 LVHDV--QSTETFRTGGGP----KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRN  275 (520)
Q Consensus       203 l~~~~--~~~~~i~~~ggi----~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~-~~g~i~~Lv~lL~~~~~  275 (520)
                      +....  +.....+..|++    +.++++|.+...+.+++.+++|+|++++.+ .+.|..++ +.|++|.|+++|++.+.
T Consensus       357 l~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d~  435 (810)
T 3now_A          357 LGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGGNQ  435 (810)
T ss_dssp             HHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTCG
T ss_pred             hccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCCCh
Confidence            86321  222244445654    456667775444788999999999999764 56777777 57999999999998766


Q ss_pred             HHHHHHHHHHHHhcCCCCcc------h---hhhh--------------hchHHHHHHHcCCHHHHHHHHhcCCChhHHHH
Q 010019          276 DSIQSLYDAIRVLLTPDDDQ------V---VASQ--------------VYGYARRFAKIGIARALVHSLHAGLSSPSLIS  332 (520)
Q Consensus       276 ~~~~~a~~aL~~Ls~~dd~~------v---~~~~--------------a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~  332 (520)
                      .++..|.++|.||+.+.+.+      .   .|+.              ..++.+.+++.|++|+|+.+|++ +++.+++.
T Consensus       436 ~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s-~s~~vqe~  514 (810)
T 3now_A          436 SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT-ESHNSQEL  514 (810)
T ss_dssp             GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC-CCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHH
Confidence            88889999999999865421      0   0110              01123678899999999999987 46889999


Q ss_pred             HHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHH---HhcCCHHHHHHHHh
Q 010019          333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAI---IENGGMDKLIVVSA  409 (520)
Q Consensus       333 a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~I---v~~g~l~~Lv~lL~  409 (520)
                      ++|+|+||+.+++++..+++.|++++|+.+|...    +...++.|+++|.+|+.+.+....+   ...|++|+|+++|.
T Consensus       515 Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~----~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~  590 (810)
T 3now_A          515 IARVLNAVCGLKELRGKVVQEGGVKALLRMALEG----TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQ  590 (810)
T ss_dssp             HHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC----CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhC
Confidence            9999999999999999999999999999999864    2478999999999998543333322   11369999999997


Q ss_pred             ccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHh-CCH
Q 010019          410 RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLS-NGV  488 (520)
Q Consensus       410 ~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~-~G~  488 (520)
                       +..+...+.+|+++|.||+..++++++.++++|+++.|+++|..  +++.+|+.|+++|+||+. +++.+..+++ .|+
T Consensus       591 -~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s--~~~~Vq~~A~~~L~NLa~-~~~~~~~~v~~~g~  666 (810)
T 3now_A          591 -QDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME--DHLYLTRAAAQCLCNLVM-SEDVIKMFEGNNDR  666 (810)
T ss_dssp             -TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS--CCTTHHHHHHHHHHHHTT-SHHHHHHHHSSSSH
T ss_pred             -CCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhC-ChHHHHHHHhccCc
Confidence             22355666799999999999888999999999999999999974  467899999999999965 6778888886 699


Q ss_pred             HHHHHHHHHhC-cchHHHHHHHHHHcCC
Q 010019          489 EKLIRQAKENH-EICKDAATDALRDLGL  515 (520)
Q Consensus       489 ~~lL~~~~~~h-~~~~~~a~aALr~Lg~  515 (520)
                      .+.|..++... .+.+..|..||.+|..
T Consensus       667 l~~Lv~LL~s~d~~vq~~Aa~ALanLt~  694 (810)
T 3now_A          667 VKFLALLCEDEDEETATACAGALAIITS  694 (810)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence            99988877554 3678889999999864

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=5.1e-32  Score=278.72  Aligned_cols=269  Identities=19%  Similarity=0.211  Sum_probs=227.9

Q ss_pred             hHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcC-----------ChHHHHHHHHHHHHhcCCCCcchhhhhh
Q 010019          233 PEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-----------RNDSIQSLYDAIRVLLTPDDDQVVASQV  301 (520)
Q Consensus       233 ~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~-----------~~~~~~~a~~aL~~Ls~~dd~~v~~~~a  301 (520)
                      ...++.|+|+|.+++.+ +++|+.+++.|++++|+.+|.+.           +.+++++|+|+|++||.+++.       
T Consensus        46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~-------  117 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA-------  117 (354)
T ss_dssp             GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHH-------
T ss_pred             hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHH-------
Confidence            35556899999999875 78999999999999999999631           127888999999999987752       


Q ss_pred             chHHHHHHHc-CCHHHHHHHHhcCCChhHHHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHH
Q 010019          302 YGYARRFAKI-GIARALVHSLHAGLSSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARIC  378 (520)
Q Consensus       302 ~~~a~~i~~~-g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~a  378 (520)
                        +.+.+... |+||+|+.+|++ .+++++..++|+|+||+.  +++++..|++.|||++|+++|..+.   +.++++.+
T Consensus       118 --~k~~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~---~~~~~~~A  191 (354)
T 3nmw_A          118 --NKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK---KESTLKSV  191 (354)
T ss_dssp             --HHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC---CHHHHHHH
T ss_pred             --HHHHHHHcCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC---CHHHHHHH
Confidence              12245455 459999999986 467899999999999996  4689999999999999999875432   24899999


Q ss_pred             HHHHHHhhC-CCchHHHHH-hcCCHHHHHHHHhccCCC--HHHHHHHHHHHHHHhc---CCHHHHHHHHhcCcHHHHHHH
Q 010019          379 CSLLSKLAG-SDSNKSAII-ENGGMDKLIVVSARFSDD--ASVLQEVMSIITVLSL---RSPENAARAMEAGSGDLAIQA  451 (520)
Q Consensus       379 l~aL~~La~-~~~~k~~Iv-~~g~l~~Lv~lL~~~~~~--~~v~~~a~~aL~nLa~---~~~~~~~~i~~~G~i~~lv~~  451 (520)
                      +++|+||+. ++++|..|+ ..|++|.|+++|+...+.  ..++++++++|+||+.   .++++++.+.++|+++.|+++
T Consensus       192 ~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~l  271 (354)
T 3nmw_A          192 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH  271 (354)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHH
Confidence            999999997 778999998 789999999999743222  1699999999999997   799999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHh-CcchHHHHHHHHHHcCCCC
Q 010019          452 MLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKEN-HEICKDAATDALRDLGLDD  517 (520)
Q Consensus       452 L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~-h~~~~~~a~aALr~Lg~~~  517 (520)
                      |+.  ++..++++|+|+|+||+.++++++..+++.|+.+.|..++.. ++..+..|..||++|...+
T Consensus       272 L~~--~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          272 LKS--HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             TTC--SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HcC--CChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            964  578899999999999987899999999999999999888754 3567889999999998654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.98  E-value=1.8e-30  Score=280.36  Aligned_cols=360  Identities=13%  Similarity=0.116  Sum_probs=295.8

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      .+..|.+.+.+.      .+++.+.+|+..|.++++.  +++++..++++|+||.|+.+|++.   +..++..|+++|.+
T Consensus       101 ~ip~LV~lL~~~------~~~~lq~~Aa~aL~nias~--~~e~~~~vv~~GaIp~Lv~lL~s~---~~~v~e~A~~aL~n  169 (510)
T 3ul1_B          101 LIPKFVSFLGKT------DCSPIQFESAWALTNIASG--TSEQTKAVVDGGAIPAFISLLASP---HAHISEQAVWALGN  169 (510)
T ss_dssp             HHHHHHHHTTCT------TCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCC------CCHHHHHHHHHHHHHHhcC--CHHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence            477888888752      4577889999999999987  899999999999999999999884   77888888899988


Q ss_pred             hhccc-ccchhHHhcCCcHHHHHHHhcCCC---ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHH
Q 010019          203 LVHDV-QSTETFRTGGGPKLLVNILIDGNE---DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSI  278 (520)
Q Consensus       203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~---~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~  278 (520)
                      ++.+. ..+..+++.|+++.|+.+|.....   ...++..++|++.++|.............|+++.|+.+|.+.+.+++
T Consensus       170 La~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~  249 (510)
T 3ul1_B          170 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL  249 (510)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHH
Confidence            87665 336777899999999999976432   34677889999999987654444555556899999999998877999


Q ss_pred             HHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChH
Q 010019          279 QSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGID  357 (520)
Q Consensus       279 ~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~  357 (520)
                      ..|||+|++|+...+.+         .+.+.+.|+++.|+.+|+. ++..++..++++|++++ .+++++..+++.|+++
T Consensus       250 ~~A~~aL~~L~~~~~~~---------~~~i~~~g~i~~Lv~lL~~-~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~  319 (510)
T 3ul1_B          250 ADSCWAISYLTDGPNER---------IEMVVKKGVVPQLVKLLGA-TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA  319 (510)
T ss_dssp             HHHHHHHHHHTSSCHHH---------HHHHHTTTCHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred             HHHHHHHHHHhhchhhh---------HHHHHhcccchhhhhhhcC-CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchH
Confidence            99999999999766433         2356688999999999986 45778999999999998 5778889999999999


Q ss_pred             HHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc-CCHHH
Q 010019          358 ALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL-RSPEN  435 (520)
Q Consensus       358 ~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~-~~~~~  435 (520)
                      .|+.+|...    +..++..|+++|+||+ ++++.+..+++.|++|.|+.+|.  +.+..++++|+|+|+||+. .++++
T Consensus       320 ~L~~LL~~~----~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~--~~~~~v~~~Aa~aL~Nl~~~~~~~~  393 (510)
T 3ul1_B          320 VFPSLLTNP----KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS--KADFKTQKEAAWAITNYTSGGTVEQ  393 (510)
T ss_dssp             GCC-CTTCS----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHhcCC----CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHccCCHHH
Confidence            999999753    3589999999999998 56778888999999999999998  7799999999999999986 46788


Q ss_pred             HHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh------ChhhHHHHHhCCHHHHHHHHHHhCc--chHHHHH
Q 010019          436 AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR------NPENRKLLLSNGVEKLIRQAKENHE--ICKDAAT  507 (520)
Q Consensus       436 ~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~------~~e~~~~l~~~G~~~lL~~~~~~h~--~~~~~a~  507 (520)
                      +..+++.|+++.|+.+|..  .+++++..+.++|.|+...      ....+..|.+.|+.+.|..+ ..|+  +....|.
T Consensus       394 ~~~L~~~g~i~~L~~LL~~--~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~  470 (510)
T 3ul1_B          394 IVYLVHCGIIEPLMNLLSA--KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASL  470 (510)
T ss_dssp             HHHHHHTTCHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHG-GGCSSHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHH-HcCCCHHHHHHHH
Confidence            9999999999999999954  6899999999999999631      12345566788999998665 4664  3344555


Q ss_pred             HHHHH
Q 010019          508 DALRD  512 (520)
Q Consensus       508 aALr~  512 (520)
                      ..|..
T Consensus       471 ~iie~  475 (510)
T 3ul1_B          471 NLIEK  475 (510)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.98  E-value=5.8e-30  Score=269.45  Aligned_cols=360  Identities=12%  Similarity=0.114  Sum_probs=297.2

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhc-CcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~-Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      +..|.+.+.+       +|.+....|+..|+++++...++.. ..+.+. |++|.|+++|++.  ++..++..|++.|+.
T Consensus        22 l~~l~~~l~s-------~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~--~~~~v~~~a~~~L~~   91 (450)
T 2jdq_A           22 TSDMIEMIFS-------KSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRK--ENCTLQFESAWVLTN   91 (450)
T ss_dssp             CHHHHHHHHS-------SCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCC--CCHHHHHHHHHHHHH
Confidence            5566667766       6788889999999998653113333 445666 9999999999874  267888888888888


Q ss_pred             hhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhc-CChHHHHH
Q 010019          203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR-QRNDSIQS  280 (520)
Q Consensus       203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~-~~~~~~~~  280 (520)
                      +..+. +.+..+++.|+++.|+++|++  ++++++..++++|++++...+.+|..+++.|+++.|+.+|++ .+.+++..
T Consensus        92 l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~  169 (450)
T 2jdq_A           92 IASGNSLQTRIVIQAGAVPIFIELLSS--EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRN  169 (450)
T ss_dssp             HHSSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHH
T ss_pred             HhcCCHHHHHHHHhCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHH
Confidence            87543 334567788999999999984  578999999999999998888899999999999999999996 35588999


Q ss_pred             HHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHH
Q 010019          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDAL  359 (520)
Q Consensus       281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~L  359 (520)
                      ++|+|++|+.++++....        .+. .+++|.|+.+|+. .+..++..++|+|.+|+. .++.+..+.+.|+++.|
T Consensus       170 a~~~L~~l~~~~~~~~~~--------~~~-~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  239 (450)
T 2jdq_A          170 AVWALSNLCRGKSPPPEF--------AKV-SPCLNVLSWLLFV-SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL  239 (450)
T ss_dssp             HHHHHHHHHCCSSSCCCG--------GGT-GGGHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHH
T ss_pred             HHHHHHHHhCCCCCCCCH--------HHH-HHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHH
Confidence            999999999865322211        122 6899999999985 467899999999999995 56788889999999999


Q ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHhhCC-CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHH
Q 010019          360 LRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR  438 (520)
Q Consensus       360 l~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~  438 (520)
                      +.+|.+    .+..++..++++|++|+.. ++.+..+++.|+++.|+.+|.  ++++.+++.++++|.+|+.+++++.+.
T Consensus       240 ~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~vr~~a~~~L~~l~~~~~~~~~~  313 (450)
T 2jdq_A          240 VELLMH----NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS--SPKESIKKEACWTISNITAGNRAQIQT  313 (450)
T ss_dssp             HHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTT--CSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHCC----CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999974    2358999999999999965 455667889999999999998  568999999999999999989999999


Q ss_pred             HHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHc
Q 010019          439 AMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRDL  513 (520)
Q Consensus       439 i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~L  513 (520)
                      +++.|+++.++++|..  +++.+++.|||+|.|++.+ +++....+++.|+.+.|..++... +..+..|..||.+|
T Consensus       314 ~~~~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  388 (450)
T 2jdq_A          314 VIDANIFPALISILQT--AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI  388 (450)
T ss_dssp             HHHTTHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            9999999999999986  5789999999999999876 788899999989888888877543 45677777787765

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.98  E-value=2.4e-30  Score=278.25  Aligned_cols=362  Identities=19%  Similarity=0.190  Sum_probs=286.6

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      .+..|...+.++      .|.+....++..|++++.   +++++..+.+.|++|.|+++|++.   ++.++..|+.+|.+
T Consensus        60 ~i~~Lv~~L~~~------~~~~~~~~a~~~L~~ls~---~~~~~~~i~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~  127 (529)
T 1jdh_A           60 MVSAIVRTMQNT------NDVETARCTAGTLHNLSH---HREGLLAIFKSGGIPALVKMLGSP---VDSVLFYAITTLHN  127 (529)
T ss_dssp             HHHHHHHHHHHC------CCHHHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhcC------CCHHHHHHHHHHHHHHHc---CchhHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence            566677666541      467888999999999987   567999999999999999999874   67888888888888


Q ss_pred             hhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHH
Q 010019          203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQS  280 (520)
Q Consensus       203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~  280 (520)
                      ++.+. ..+..+++.|+++.|+++|++  ++.+++..++.+|.+++..+++++..+.+.|+++.|+.+|+++.. .....
T Consensus       128 l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~  205 (529)
T 1jdh_A          128 LLLHQEGAKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT  205 (529)
T ss_dssp             HHHHCTTHHHHHHHHTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHH
T ss_pred             HhcCCcchHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHH
Confidence            87653 346677789999999999985  568888889999999998889999999999999999999998755 55566


Q ss_pred             HHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCH---------------------------------------HHHHHHH
Q 010019          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIA---------------------------------------RALVHSL  321 (520)
Q Consensus       281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l---------------------------------------~~Lv~lL  321 (520)
                      ++.+|++|+..++++.          .+.+.|++                                       |.|+.+|
T Consensus       206 a~~~L~~l~~~~~~~~----------~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll  275 (529)
T 1jdh_A          206 TSRVLKVLSVCSSNKP----------AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL  275 (529)
T ss_dssp             HHHHHHHHTTSTTHHH----------HHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCcccHH----------HHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHH
Confidence            8999999998766544          34444444                                       5555555


Q ss_pred             hcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-Cc---hHHHHH
Q 010019          322 HAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DS---NKSAII  396 (520)
Q Consensus       322 ~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~-~~---~k~~Iv  396 (520)
                      ++ .+++++..++++|++|+. ++++++.+.+.||++.|+++|....+  +..++..++++|++|+.. ++   .+..++
T Consensus       276 ~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~  352 (529)
T 1jdh_A          276 GS-DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD--REDITEPAICALRHLTSRHQEAEMAQNAVR  352 (529)
T ss_dssp             TC-SCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTSSSTTHHHHHHHHH
T ss_pred             cC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCC--HHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            43 357788899999999995 46799999999999999999987433  248999999999999865 33   467899


Q ss_pred             hcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHH-----
Q 010019          397 ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN-----  471 (520)
Q Consensus       397 ~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~n-----  471 (520)
                      +.|+++.|+++|+. ..++.+++.++|+|+|++. +++++..+.+.|+++.++++|..  +++.++++|+|++.|     
T Consensus       353 ~~~~i~~L~~lL~~-~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~n~~~~~  428 (529)
T 1jdh_A          353 LHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVR--AHQDTQRRTSMGGTQQQFVE  428 (529)
T ss_dssp             HTTCHHHHHHTTST-TCCHHHHHHHHHHHHHHTT-SGGGHHHHHHTTHHHHHHHHHHH--HHHHHC-----------CBT
T ss_pred             HcCChhHHHHHhcc-ccchHHHHHHHHHHHHHhc-ChhhhHHHHHcCCHHHHHHHHHH--HhHHHHHHHhcccCchhhhc
Confidence            99999999999973 3347999999999999996 66778899999999999999975  567888888887766     


Q ss_pred             -----------------HhhhChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHcCCC
Q 010019          472 -----------------LVARNPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRDLGLD  516 (520)
Q Consensus       472 -----------------L~~~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~Lg~~  516 (520)
                                       | ..+++++..+.+.|+.+.|..++... +..+..|..||.+|+.+
T Consensus       429 ~~~~~~i~~~~~~al~~L-~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~  490 (529)
T 1jdh_A          429 GVRMEEIVEGCTGALHIL-ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  490 (529)
T ss_dssp             TBCHHHHHHHHHHHHHHH-TTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             cccHHHHHHHHHHHHHHH-hcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC
Confidence                             5 34678888999998888887776443 45677889999998754

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.98  E-value=3e-30  Score=279.75  Aligned_cols=359  Identities=12%  Similarity=0.102  Sum_probs=295.4

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      .+..|...+.++      .+.+.+.+|+..|.++++.  +..++..++++|+||.|+.+|++.   +..++..|+++|++
T Consensus       120 ~ip~Lv~lL~~~------~~~~~q~~Aa~aL~nia~~--~~~~~~~vv~~Gaip~Lv~LL~s~---~~~v~e~A~~aL~n  188 (529)
T 3tpo_A          120 LIPKFVSFLGKT------DCSPIQFESAWALTNIASG--TSEQTKAVVDGGAIPAFISLLASP---HAHISEQAVWALGN  188 (529)
T ss_dssp             HHHHHHHHHTCT------TCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHcCC------CCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence            477888888652      5578889999999999997  888999999999999999999885   77888888888888


Q ss_pred             hhccc-ccchhHHhcCCcHHHHHHHhcCCC---ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHH
Q 010019          203 LVHDV-QSTETFRTGGGPKLLVNILIDGNE---DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSI  278 (520)
Q Consensus       203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~---~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~  278 (520)
                      ++.+. ..+..+++.|+++.|+.+|.....   ...++..++|++.++|...+.........|++|.|+.+|.+.+.+++
T Consensus       189 La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~  268 (529)
T 3tpo_A          189 IAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL  268 (529)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred             HhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHH
Confidence            87654 346778899999999999975432   34677889999999987655455555566899999999998877999


Q ss_pred             HHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChH
Q 010019          279 QSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGID  357 (520)
Q Consensus       279 ~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~  357 (520)
                      ..|||+|++|+...+.+         .+.+.+.|+++.|+.+|.+ ++..++..++.+|++|+ .+++.+..+++.|+++
T Consensus       269 ~~a~~aL~~l~~~~~~~---------~~~v~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~  338 (529)
T 3tpo_A          269 ADSCWAISYLTDGPNER---------IEMVVKKGVVPQLVKLLGA-TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA  338 (529)
T ss_dssp             HHHHHHHHHHHSSCHHH---------HHHHHTTTCHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred             HHHHHHHHHhhhhhhhh---------HHHHHhccchHHHHHHhcC-CChhHHHHHHHHHHHHHccchHHHHHHhhcccHH
Confidence            99999999999866433         3356688999999999986 46778999999999998 5778899999999999


Q ss_pred             HHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc-CCHHH
Q 010019          358 ALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL-RSPEN  435 (520)
Q Consensus       358 ~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~-~~~~~  435 (520)
                      .|+.+|...    +..++..|+++|+||+. +++.+..+++.|++|.|+.+|.  +++..++++|+|+|+||+. .++++
T Consensus       339 ~L~~LL~~~----~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nl~~~~~~~~  412 (529)
T 3tpo_A          339 VFPSLLTNP----KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS--KADFKTQKAAAWAITNYTSGGTVEQ  412 (529)
T ss_dssp             GHHHHTTCS----SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHcCC----CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhc--CCCHHHHHHHHHHHHHHHcCCCHHH
Confidence            999999853    35899999999999985 6677888999999999999998  7789999999999999986 47889


Q ss_pred             HHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh------ChhhHHHHHhCCHHHHHHHHHHhCc--chHHHHH
Q 010019          436 AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR------NPENRKLLLSNGVEKLIRQAKENHE--ICKDAAT  507 (520)
Q Consensus       436 ~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~------~~e~~~~l~~~G~~~lL~~~~~~h~--~~~~~a~  507 (520)
                      ...+++.|+++.|+.+|..  .+++++..+.++|.|+...      ....+..|.+.|+.+.|..+ ..|+  +....|.
T Consensus       413 ~~~l~~~g~i~~L~~LL~~--~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~  489 (529)
T 3tpo_A          413 IVYLVHCGIIEPLMNLLSA--KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASL  489 (529)
T ss_dssp             HHHHHHTTCHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGG-GGCSSHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHH-HcCCCHHHHHHHH
Confidence            9999999999999999954  6899999999999999631      12334556788988888665 4665  2334455


Q ss_pred             HHHH
Q 010019          508 DALR  511 (520)
Q Consensus       508 aALr  511 (520)
                      ..|.
T Consensus       490 ~iie  493 (529)
T 3tpo_A          490 NLIE  493 (529)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5553

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.98  E-value=2.3e-30  Score=278.45  Aligned_cols=364  Identities=16%  Similarity=0.149  Sum_probs=307.2

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHh-cCcHHHHHHHHhhcccCcHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~-~Gaip~Lv~lL~~~~~~~~~~~~~al~~La  201 (520)
                      ++..|...+.+       +|......++..|.+++.   +.+++..+.. .|++|.|+++|+++  .+..++..++.+|.
T Consensus        18 ~i~~Lv~lL~~-------~~~~v~~~A~~~L~~l~~---~~~~~~~~~~~~~~i~~Lv~~L~~~--~~~~~~~~a~~~L~   85 (529)
T 1jdh_A           18 AIPELTKLLND-------EDQVVVNKAAVMVHQLSK---KEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLH   85 (529)
T ss_dssp             HHHHHHHHHTC-------SCHHHHHHHHHHHHHHHT---SHHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCC-------CCHHHHHHHHHHHHHHHc---CCccHHHHHhCcchHHHHHHHHhcC--CCHHHHHHHHHHHH
Confidence            57778887776       678888999999999998   4567766665 49999999999864  36788888899998


Q ss_pred             HhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHH
Q 010019          202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL  281 (520)
Q Consensus       202 ~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a  281 (520)
                      .+..+.+.+..+.+.|+++.|+++|++  ++++++..++++|.++|..++..+..+.+.|+++.|+++|++.+..+...+
T Consensus        86 ~ls~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~  163 (529)
T 1jdh_A           86 NLSHHREGLLAIFKSGGIPALVKMLGS--PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT  163 (529)
T ss_dssp             HHTTSHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHH
T ss_pred             HHHcCchhHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence            887666667888999999999999974  468999999999999998877889999999999999999998766888888


Q ss_pred             HHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHH
Q 010019          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR  361 (520)
Q Consensus       282 ~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~  361 (520)
                      +.+|.+|+..++         ++.+.+.+.|+++.|+.+|+++.+......++.+|++|+.+++++..+++.|+++.|+.
T Consensus       164 ~~~L~~la~~~~---------~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~  234 (529)
T 1jdh_A          164 TDCLQILAYGNQ---------ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL  234 (529)
T ss_dssp             HHHHHHHHTTCH---------HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHT
T ss_pred             HHHHHHHHhCCH---------HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHH
Confidence            999999998542         23347778899999999999876666778889999999999999999999999999999


Q ss_pred             HHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 010019          362 CIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME  441 (520)
Q Consensus       362 lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~  441 (520)
                      ++.+.    +..++..++++|.+|+.......  ...|+++.|+++|.  ++++.+++.++++|++|+.++++++..+.+
T Consensus       235 ll~~~----~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~  306 (529)
T 1jdh_A          235 HLTDP----SQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQ  306 (529)
T ss_dssp             TTTSS----CHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHhCC----ChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            99763    35899999999999996543322  22478999999997  779999999999999999988999999999


Q ss_pred             cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChh---hHHHHHhCCHHHHHHHHHHhCc--chHHHHHHHHHHcCCC
Q 010019          442 AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE---NRKLLLSNGVEKLIRQAKENHE--ICKDAATDALRDLGLD  516 (520)
Q Consensus       442 ~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e---~~~~l~~~G~~~lL~~~~~~h~--~~~~~a~aALr~Lg~~  516 (520)
                      .|+++.++++|..+++++.++..|+++|+||+.++++   .+..+++.|+.+.|..++....  ..+..+..+|+++...
T Consensus       307 ~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~  386 (529)
T 1jdh_A          307 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC  386 (529)
T ss_dssp             TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred             cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence            9999999999987656689999999999999876554   4778899988888888775542  5677888999999865


Q ss_pred             C
Q 010019          517 D  517 (520)
Q Consensus       517 ~  517 (520)
                      +
T Consensus       387 ~  387 (529)
T 1jdh_A          387 P  387 (529)
T ss_dssp             G
T ss_pred             h
Confidence            4

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.97  E-value=1.5e-29  Score=280.54  Aligned_cols=364  Identities=16%  Similarity=0.143  Sum_probs=304.0

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHh-cCcHHHHHHHHhhcccCcHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~-~Gaip~Lv~lL~~~~~~~~~~~~~al~~La  201 (520)
                      ++..|...+.+       ++......++..|..++..   ..++..+.. .|+++.|+++|++.  .+.+++..|+.+|.
T Consensus        15 ~i~~Lv~lL~~-------~~~~vr~~A~~~L~~La~~---~~~~~~i~~~~~~i~~Lv~~L~~~--~~~~~~~~A~~~L~   82 (644)
T 2z6h_A           15 AIPELTKLLND-------EDQVVVNKAAVMVHQLSKK---EASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLH   82 (644)
T ss_dssp             THHHHHHHHTC-------SCHHHHHHHHHHHHHHHTS---TTHHHHHTTCHHHHHHHHHHHHSC--CCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcC-------CCHHHHHHHHHHHHHHHCC---ChhHHHHHhccChHHHHHHHHhcC--CCHHHHHHHHHHHH
Confidence            46677777766       6788889999999999984   456766665 49999999999864  36788888899998


Q ss_pred             HhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHH
Q 010019          202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL  281 (520)
Q Consensus       202 ~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a  281 (520)
                      .++.+.+.+..+.+.|+++.|+++|++  ++++++..++++|.+++..++..+..+++.|+++.|+++|++.+..++..+
T Consensus        83 ~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a  160 (644)
T 2z6h_A           83 NLSHHREGLLAIFKSGGIPALVKMLGS--PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT  160 (644)
T ss_dssp             HHTTSHHHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHH
T ss_pred             HHhcChhhHHHHHHcCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHH
Confidence            887666667888899999999999974  468999999999999998777888899999999999999998766777778


Q ss_pred             HHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHH
Q 010019          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR  361 (520)
Q Consensus       282 ~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~  361 (520)
                      +.+|++|+..++         ++...+.+.|+++.|+.+|++......+..++.+|++|+.+++++..+++.|+++.|+.
T Consensus       161 ~~~L~~La~~~~---------~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~  231 (644)
T 2z6h_A          161 TDCLQILAYGNQ---------ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL  231 (644)
T ss_dssp             HHHHHHHHTTCH---------HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHT
T ss_pred             HHHHHHHHhcCc---------HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHH
Confidence            889999997432         22347778899999999999876566788999999999999999999999999999999


Q ss_pred             HHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 010019          362 CIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME  441 (520)
Q Consensus       362 lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~  441 (520)
                      ++...    +..++..++++|++|+......  ....|+++.|+++|+  ++++.+++.++++|++|+.+++++++.+.+
T Consensus       232 ll~~~----~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~--~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~  303 (644)
T 2z6h_A          232 HLTDP----SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQ  303 (644)
T ss_dssp             TTTCS----CHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHhcC----CHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99763    3589999999999998543221  122378999999998  678999999999999999988999999999


Q ss_pred             cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChh---hHHHHHhCCHHHHHHHHHHhC--cchHHHHHHHHHHcCCC
Q 010019          442 AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE---NRKLLLSNGVEKLIRQAKENH--EICKDAATDALRDLGLD  516 (520)
Q Consensus       442 ~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e---~~~~l~~~G~~~lL~~~~~~h--~~~~~~a~aALr~Lg~~  516 (520)
                      .|+++.|+++|..+++...++..|+++|+||+.++++   .+..+++.|+.+.|..++...  +.....|..+|++|...
T Consensus       304 ~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~  383 (644)
T 2z6h_A          304 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC  383 (644)
T ss_dssp             TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred             cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence            9999999999987555589999999999999876553   456688899998888887653  25677889999999865


Q ss_pred             C
Q 010019          517 D  517 (520)
Q Consensus       517 ~  517 (520)
                      +
T Consensus       384 ~  384 (644)
T 2z6h_A          384 P  384 (644)
T ss_dssp             G
T ss_pred             H
Confidence            4

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.97  E-value=1.9e-28  Score=264.80  Aligned_cols=362  Identities=14%  Similarity=0.162  Sum_probs=300.5

Q ss_pred             HHHHHHHHhhcCCCCCChhh-HHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDED-LNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d-~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La  201 (520)
                      .+..|...+.+       ++ .+.+..|+..|..++..  ++.++..+++.|++|.|+.+|++.   +..++..|+++|+
T Consensus       118 ~v~~Lv~lL~~-------~~~~~v~~~A~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~lL~~~---~~~v~~~a~~aL~  185 (528)
T 4b8j_A          118 VVPRFVQFLTR-------EDFPQLQFEAAWALTNIASG--TSENTKVVIDHGAVPIFVKLLGSS---SDDVREQAVWALG  185 (528)
T ss_dssp             CHHHHHHHHTC-------TTCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCC-------CCCHHHHHHHHHHHHHHhCC--CHHHHHHHHhCCcHHHHHHHhcCC---CHHHHHHHHHHHH
Confidence            47778888776       44 78888999999999996  799999999999999999999874   7788888888888


Q ss_pred             Hhhcccc-cchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHH
Q 010019          202 LLVHDVQ-STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS  280 (520)
Q Consensus       202 ~l~~~~~-~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~  280 (520)
                      +++.+.+ .+..+...|+++.|+.+|.. ..+..++..++|+|.++|...+ ........|+++.|+.+|.+.+.+++..
T Consensus       186 ~l~~~~~~~~~~i~~~g~l~~Ll~lL~~-~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~  263 (528)
T 4b8j_A          186 NVAGDSPKCRDLVLANGALLPLLAQLNE-HTKLSMLRNATWTLSNFCRGKP-QPSFEQTRPALPALARLIHSNDEEVLTD  263 (528)
T ss_dssp             HHHHTCHHHHHHHHHTTCHHHHHHTCCT-TCCHHHHHHHHHHHHHHHCSSS-CCCHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             HHhCCChhhHHHHHHCCcHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            8876542 36677888999999999953 3578999999999999997653 3344456899999999998877799999


Q ss_pred             HHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHH
Q 010019          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDAL  359 (520)
Q Consensus       281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~L  359 (520)
                      ++++|.+|+...+.+.         +.+.+.|+++.|+.+|... +..++..++++|++|+. +++..+.+++.|+++.|
T Consensus       264 a~~aL~~l~~~~~~~~---------~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L  333 (528)
T 4b8j_A          264 ACWALSYLSDGTNDKI---------QAVIEAGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCL  333 (528)
T ss_dssp             HHHHHHHHTSSCHHHH---------HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHH
T ss_pred             HHHHHHHHHcCCHHHH---------HHHHHcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHH
Confidence            9999999997654332         3667889999999999864 57789999999999995 67788889999999999


Q ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC-CHHHHH
Q 010019          360 LRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR-SPENAA  437 (520)
Q Consensus       360 l~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~-~~~~~~  437 (520)
                      +.+|....   +..++..|+++|+||+. +++....+++.|+++.|+.+|.  ..++.+++.|+++|.+|+.. ++++..
T Consensus       334 ~~lL~~~~---~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~  408 (528)
T 4b8j_A          334 LSLLTQNL---KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ--TAEFDIKKEAAWAISNATSGGSHDQIK  408 (528)
T ss_dssp             HHHHHSCC---CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHcCCC---cHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh--cCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            99998631   35899999999999985 5667778899999999999998  56899999999999999986 789999


Q ss_pred             HHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChh-----------hHHHHHhCCHHHHHHHHHHhCc--chHH
Q 010019          438 RAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE-----------NRKLLLSNGVEKLIRQAKENHE--ICKD  504 (520)
Q Consensus       438 ~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e-----------~~~~l~~~G~~~lL~~~~~~h~--~~~~  504 (520)
                      .+++.|+++.++.+|..  .++.++..|+++|.||....+.           ....+.+.|+.+.|..++ .|+  +...
T Consensus       409 ~l~~~~~i~~L~~lL~~--~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~-~~~~~~v~~  485 (528)
T 4b8j_A          409 YLVSEGCIKPLCDLLIC--PDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQ-SHDNNEIYE  485 (528)
T ss_dssp             HHHHTTCHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGG-GCSSHHHHH
T ss_pred             HHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHH-cCCCHHHHH
Confidence            99999999999999965  6889999999999999754333           577788889988887764 554  4456


Q ss_pred             HHHHHHHHcCCC
Q 010019          505 AATDALRDLGLD  516 (520)
Q Consensus       505 ~a~aALr~Lg~~  516 (520)
                      .|...|..+--.
T Consensus       486 ~a~~il~~~~~~  497 (528)
T 4b8j_A          486 KAVKILEAYWMD  497 (528)
T ss_dssp             HHHHHHHHHCC-
T ss_pred             HHHHHHHHHCCC
Confidence            677777766433

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.97  E-value=1.7e-28  Score=272.11  Aligned_cols=364  Identities=17%  Similarity=0.175  Sum_probs=293.4

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHH
Q 010019          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (520)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La  201 (520)
                      ..+..|...+.++      .+.+.+..++..|+.++.   +.+++..+.+.|++|.|+++|++.   +..++..|+.+|.
T Consensus        56 ~~i~~Lv~~L~~~------~~~~~~~~A~~~L~~Ls~---~~~~~~~i~~~g~i~~Lv~lL~~~---~~~v~~~A~~aL~  123 (644)
T 2z6h_A           56 QMVSAIVRTMQNT------NDVETARCTAGTLHNLSH---HREGLLAIFKSGGIPALVKMLGSP---VDSVLFYAITTLH  123 (644)
T ss_dssp             HHHHHHHHHHHSC------CCHHHHHHHHHHHHHHTT---SHHHHHHHHTTTHHHHHHHHTTCS---SHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhcC------CCHHHHHHHHHHHHHHhc---ChhhHHHHHHcCCHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence            3566777777652      467888999999999887   566999999999999999999874   6788888888888


Q ss_pred             Hhhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHH
Q 010019          202 LLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQ  279 (520)
Q Consensus       202 ~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~  279 (520)
                      +++.+. +.+..+++.|+++.|+++|++.  +.+++..++.+|.+++..++++|..+.+.|+++.|+.+|++... ..+.
T Consensus       124 nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~  201 (644)
T 2z6h_A          124 NLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW  201 (644)
T ss_dssp             HHHHHSTTHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHH
T ss_pred             HHHhCcchhHHHHHHCCChHHHHHHHCcC--CHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHH
Confidence            887553 3356777899999999999854  67888888899999998889999999999999999999998754 6677


Q ss_pred             HHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHH---------------------------------------HH
Q 010019          280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALV---------------------------------------HS  320 (520)
Q Consensus       280 ~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv---------------------------------------~l  320 (520)
                      .++.+|++|+...+++.          .+.+.|+++.|+                                       .+
T Consensus       202 ~a~~~L~nLs~~~~~~~----------~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~l  271 (644)
T 2z6h_A          202 TTSRVLKVLSVCSSNKP----------AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL  271 (644)
T ss_dssp             HHHHHHHHHTTCTTHHH----------HHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcccHH----------HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHH
Confidence            89999999998766544          455555555554                                       44


Q ss_pred             HhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-Cc---hHHHH
Q 010019          321 LHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DS---NKSAI  395 (520)
Q Consensus       321 L~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~-~~---~k~~I  395 (520)
                      |++ .+.+++..++++|++|+. ++++++.+.+.|+++.|+.+|....+.  ..++..|+.+|++|+.. ++   .+..+
T Consensus       272 L~~-~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~--~~v~~~a~~aL~nL~~~~~~~~~~q~~v  348 (644)
T 2z6h_A          272 LGS-DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR--EDITEPAICALRHLTSRHQEAEMAQNAV  348 (644)
T ss_dssp             TTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTSSSTTHHHHHHHH
T ss_pred             HcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCc--HHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            443 356788899999999995 468899999999999999999875332  48999999999999864 32   34568


Q ss_pred             HhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhC--------------------
Q 010019          396 IENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF--------------------  455 (520)
Q Consensus       396 v~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~--------------------  455 (520)
                      ++.|+++.|+++|+. ..++.+++.++|+|+||+. ++++++.+++.|+++.|+++|...                    
T Consensus       349 ~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nLa~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~  426 (644)
T 2z6h_A          349 RLHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG  426 (644)
T ss_dssp             HHTTHHHHHHHTTST-TCCHHHHHHHHHHHHHHTT-SGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCS
T ss_pred             HHccChHHHHHHhCc-cCchHHHHHHHHHHHHHcc-CHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccc
Confidence            889999999999973 3357999999999999997 567779999999999999999752                    


Q ss_pred             CCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHcCC
Q 010019          456 PNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRDLGL  515 (520)
Q Consensus       456 ~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~Lg~  515 (520)
                      ..+..++..++.+|++|+ ++++++..+.+.|+.+.|..++... +..+..|..+|.+|+-
T Consensus       427 ~~~~~v~~~a~~aL~~La-~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~  486 (644)
T 2z6h_A          427 VRMEEIVEGCTGALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  486 (644)
T ss_dssp             SCHHHHHHHHHHHHHHHT-TSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHHh-cCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            123556777888888884 6789999999998888888877543 4567778888888764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.97  E-value=3.3e-28  Score=256.01  Aligned_cols=360  Identities=13%  Similarity=0.118  Sum_probs=293.1

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      .+..|...+.+.      .+.+.+..++..|..++..  +++++..+.+.|++|.|+.+|++.   ++.++..|+++|..
T Consensus        65 ~i~~L~~~L~~~------~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~---~~~vr~~a~~~L~~  133 (450)
T 2jdq_A           65 VVARFVEFLKRK------ENCTLQFESAWVLTNIASG--NSLQTRIVIQAGAVPIFIELLSSE---FEDVQEQAVWALGN  133 (450)
T ss_dssp             HHHHHHHHHTCT------TCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHCCC------CCHHHHHHHHHHHHHHhcC--CHHHHHHHHhCCCHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence            466777777661      2678889999999999986  778888888999999999999874   77888888888888


Q ss_pred             hhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC-hhhHHHHHhcCCHHHHHHHHhcCChHHHHH
Q 010019          203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN-EVVKESYMELKIDELILEILSRQRNDSIQS  280 (520)
Q Consensus       203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~-e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~  280 (520)
                      +..+. ..+..+++.|+++.|+++|.+ ..+.+++..++++|++++... +..+..++ .|+++.|+.+|++.+..++..
T Consensus       134 l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~  211 (450)
T 2jdq_A          134 IAGDSTMCRDYVLDCNILPPLLQLFSK-QNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLAD  211 (450)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHHTTS-CCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHH
T ss_pred             HccCCHHHHHHHHHCCCHHHHHHHhcC-CCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHH
Confidence            87654 235667788999999999973 357899999999999999654 33333333 789999999999877788899


Q ss_pred             HHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHH
Q 010019          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDAL  359 (520)
Q Consensus       281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~L  359 (520)
                      ++|+|++|+.....         ..+.+.+.|+++.|+.+|+. ++..++..++++|++|+. +++.++.+.+.|+++.|
T Consensus       212 a~~~L~~l~~~~~~---------~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  281 (450)
T 2jdq_A          212 ACWALSYLSDGPND---------KIQAVIDAGVCRRLVELLMH-NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSL  281 (450)
T ss_dssp             HHHHHHHHTSSSHH---------HHHHHHHTTTHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHH
T ss_pred             HHHHHHHHHCCCcH---------HHHHHHHcCcHHHHHHHHCC-CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHH
Confidence            99999999976432         23466688999999999984 467899999999999995 45667778899999999


Q ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC-CHHHHH
Q 010019          360 LRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR-SPENAA  437 (520)
Q Consensus       360 l~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~-~~~~~~  437 (520)
                      +.+|.+.    +..++..|+++|++|+ ++++....+++.|+++.|+.+|.  .+++.+++.+|++|.+|+.+ ++++.+
T Consensus       282 ~~ll~~~----~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~  355 (450)
T 2jdq_A          282 LHLLSSP----KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ--TAEFRTRKEAAWAITNATSGGSAEQIK  355 (450)
T ss_dssp             HHHTTCS----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh--cCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            9999862    3589999999999999 56778888999999999999998  56899999999999999976 788889


Q ss_pred             HHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChh-----------hHHHHHhCCHHHHHHHHHHhCc--chHH
Q 010019          438 RAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE-----------NRKLLLSNGVEKLIRQAKENHE--ICKD  504 (520)
Q Consensus       438 ~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e-----------~~~~l~~~G~~~lL~~~~~~h~--~~~~  504 (520)
                      .+++.|+++.++++|..  .++.+++.|+++|.+++...+.           ....+.+.|+.+.|..++ .|+  ....
T Consensus       356 ~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~v~~  432 (450)
T 2jdq_A          356 YLVELGCIKPLCDLLTV--MDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQ-SHENQEIYQ  432 (450)
T ss_dssp             HHHHHTCHHHHHHGGGS--SCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHH-CHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHH-cCCCHHHHH
Confidence            89999999999999965  5789999999999999764332           345677777777776643 454  3455


Q ss_pred             HHHHHHHHcC
Q 010019          505 AATDALRDLG  514 (520)
Q Consensus       505 ~a~aALr~Lg  514 (520)
                      .|..+|.++-
T Consensus       433 ~a~~~l~~~~  442 (450)
T 2jdq_A          433 KAFDLIEHYF  442 (450)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHC
Confidence            6777777653

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.97  E-value=1.7e-28  Score=277.80  Aligned_cols=369  Identities=18%  Similarity=0.152  Sum_probs=300.5

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHh-cCcHHHHHHHHhhcccCcHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~-~Gaip~Lv~lL~~~~~~~~~~~~~al~~La  201 (520)
                      ++..|...+.+       .+...+..|+..|..++.   +..++..+.. .|+++.|+++|++.  .+..++..|+.+|.
T Consensus       151 ~ip~Lv~lL~~-------~d~~vr~~A~~~L~~L~~---~~~~~~~i~~~~~~i~~Lv~~L~~~--~d~~vr~~Aa~aL~  218 (780)
T 2z6g_A          151 AIPELTKLLND-------EDQVVVNKAAVMVHQLSK---KEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTSGTLH  218 (780)
T ss_dssp             HHHHHHHHHHC-------SCHHHHHHHHHHHHHHHT---SHHHHHHHTTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHCC-------CCHHHHHHHHHHHHHHhC---CChhHHHHHhccChHHHHHHHHcCC--CCHHHHHHHHHHHH
Confidence            56677777765       677888899999999998   4556777775 48999999999864  37788888888888


Q ss_pred             HhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHH
Q 010019          202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL  281 (520)
Q Consensus       202 ~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a  281 (520)
                      .+..+.+.+..+.+.|+++.|+++|++  .+..++..|+++|.++|..++..+..+++.|+++.|+++|++.+..++..+
T Consensus       219 ~Ls~~~~~~~~i~~~g~I~~Lv~lL~~--~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a  296 (780)
T 2z6g_A          219 NLSHHREGLLAIFKSGGIPALVNMLGS--PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT  296 (780)
T ss_dssp             HHHTSHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHH
T ss_pred             HHhCCchhHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence            887665557788889999999999975  468999999999999998878889999999999999999998666788889


Q ss_pred             HHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHH
Q 010019          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR  361 (520)
Q Consensus       282 ~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~  361 (520)
                      +.+|++|+..++         +....+.+.|+++.|+.+|+.+........++.+|++|+..++++..+++.|+++.|+.
T Consensus       297 ~~aL~~La~~~~---------e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~  367 (780)
T 2z6g_A          297 TDCLQILAYGNQ---------ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL  367 (780)
T ss_dssp             HHHHHHHHTTCH---------HHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGG
T ss_pred             HHHHHHHhcCCh---------HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHH
Confidence            999999997432         22336778899999999999865556677889999999998899999999999988877


Q ss_pred             HHhcc-----------------------------------CCCCcHHHHHHHHHHHHHhhCC-CchHHHHHhcCCHHHHH
Q 010019          362 CIDDS-----------------------------------GLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLI  405 (520)
Q Consensus       362 lL~~~-----------------------------------~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~g~l~~Lv  405 (520)
                      +|.+.                                   ....+..++..|+++|++|+.. ++++..+++.|+++.|+
T Consensus       368 lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv  447 (780)
T 2z6g_A          368 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV  447 (780)
T ss_dssp             GTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHH
T ss_pred             HHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence            66431                                   1123568889999999999865 57888999999999999


Q ss_pred             HHHhccCCCHHHHHHHHHHHHHHhcCCHHH---HHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHH
Q 010019          406 VVSARFSDDASVLQEVMSIITVLSLRSPEN---AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKL  482 (520)
Q Consensus       406 ~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~---~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~  482 (520)
                      ++|...++.+.+++.|+++|.+|+.++++.   +..+...|+++.|+++|.. ++.+.+++.|||+|+||+. +++++..
T Consensus       448 ~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~-~~~~~v~~~A~~aL~nLa~-~~~~~~~  525 (780)
T 2z6g_A          448 RTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLAL-CPANHAP  525 (780)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTST-TCCHHHHHHHHHHHHHHHS-SHHHHHH
T ss_pred             HHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcC-CChHHHHHHHHHHHHHHhc-CHHHHHH
Confidence            999854445699999999999999866653   4578899999999999964 4557999999999999964 6777899


Q ss_pred             HHhCCHHHHHHHHHHhCc-----------------------chHHHHHHHHHHcCCC
Q 010019          483 LLSNGVEKLIRQAKENHE-----------------------ICKDAATDALRDLGLD  516 (520)
Q Consensus       483 l~~~G~~~lL~~~~~~h~-----------------------~~~~~a~aALr~Lg~~  516 (520)
                      +.+.|+.+.|..++....                       .....+..||++|..+
T Consensus       526 i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~  582 (780)
T 2z6g_A          526 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD  582 (780)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC
Confidence            999999988888775421                       1234578888888654

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.97  E-value=8.6e-28  Score=260.01  Aligned_cols=360  Identities=13%  Similarity=0.116  Sum_probs=299.3

Q ss_pred             HHHHHHHHhhcCCCCCChh-hHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDE-DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~-d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La  201 (520)
                      .+..|...+.+       + +.+.+..++..|..++..  ++.++..+++.|++|.|+.+|++.   +..++..|+++|.
T Consensus       131 ~i~~Lv~~L~~-------~~~~~v~~~A~~~L~~l~~~--~~~~~~~~~~~g~i~~Lv~lL~~~---~~~vr~~A~~aL~  198 (530)
T 1wa5_B          131 VVPRLVEFMRE-------NQPEMLQLEAAWALTNIASG--TSAQTKVVVDADAVPLFIQLLYTG---SVEVKEQAIWALG  198 (530)
T ss_dssp             CHHHHHHTTST-------TSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTCHHHHHHHHHHC---CHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCC-------CCCHHHHHHHHHHHHHHhCC--CHHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence            46777777765       4 678889999999999996  788899999999999999999974   7888888888888


Q ss_pred             Hhhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHH
Q 010019          202 LLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS  280 (520)
Q Consensus       202 ~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~  280 (520)
                      +++.+. ..+..++..|+++.|+++|.+  .+.+++..++|+|.++|.............|+++.|+.+|.+.+..++..
T Consensus       199 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~  276 (530)
T 1wa5_B          199 NVAGDSTDYRDYVLQCNAMEPILGLFNS--NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVD  276 (530)
T ss_dssp             HHHTTCHHHHHHHHHTTCHHHHHHGGGS--CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHH
T ss_pred             HHhCCCccchHHHHHcCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHH
Confidence            887653 335667788999999999985  67899999999999999765344556667899999999998877788899


Q ss_pred             HHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHH
Q 010019          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDAL  359 (520)
Q Consensus       281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~L  359 (520)
                      ++|+|.+|+...+.         ..+.+.+.|+++.|+.+|.. .+..++..++++|++|+. +++..+.+.+.|+++.|
T Consensus       277 a~~~L~~L~~~~~~---------~~~~~~~~~~v~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  346 (530)
T 1wa5_B          277 ACWAISYLSDGPQE---------AIQAVIDVRIPKRLVELLSH-ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPAL  346 (530)
T ss_dssp             HHHHHHHHHSSCHH---------HHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHhCCCHH---------HHHHHHhcCcHHHHHHHHCC-CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHH
Confidence            99999999976432         23356688999999999985 467889999999999994 56778888999999999


Q ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC-CH--HH
Q 010019          360 LRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR-SP--EN  435 (520)
Q Consensus       360 l~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~-~~--~~  435 (520)
                      +.+|...    +..++..|+++|++|+. +++....+++.|+++.|+.+|.  ..++.+++.++++|.+|+.. ++  ++
T Consensus       347 ~~lL~~~----~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~aL~~l~~~~~~~~~~  420 (530)
T 1wa5_B          347 RLLLSSP----KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE--VAEYKTKKEACWAISNASSGGLQRPDI  420 (530)
T ss_dssp             HHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHTTTCTHH
T ss_pred             HHHHcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh--cCCHHHHHHHHHHHHHHHhcCCCcHHH
Confidence            9999863    35899999999999984 6677778889999999999998  56899999999999999874 45  78


Q ss_pred             HHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChh-----------hHHHHHhCCHHHHHHHHHHhCc--ch
Q 010019          436 AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE-----------NRKLLLSNGVEKLIRQAKENHE--IC  502 (520)
Q Consensus       436 ~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e-----------~~~~l~~~G~~~lL~~~~~~h~--~~  502 (520)
                      ...+++.|+++.++.+|..  .++.++..|+++|.++....+.           .+..+.+.|+.+.|..+. .|+  ..
T Consensus       421 ~~~l~~~~~l~~L~~ll~~--~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~-~~~~~~v  497 (530)
T 1wa5_B          421 IRYLVSQGCIKPLCDLLEI--ADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ-QNENDKI  497 (530)
T ss_dssp             HHHHHHTTCHHHHHHHTTT--CCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGG-GCSCHHH
T ss_pred             HHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHH-cCCCHHH
Confidence            8899999999999999964  5899999999999999754322           456788889998887754 564  45


Q ss_pred             HHHHHHHHHHcCC
Q 010019          503 KDAATDALRDLGL  515 (520)
Q Consensus       503 ~~~a~aALr~Lg~  515 (520)
                      +..|..+|.++-.
T Consensus       498 ~~~a~~il~~~~~  510 (530)
T 1wa5_B          498 YEKAYKIIETYFG  510 (530)
T ss_dssp             HHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHCC
Confidence            6678888887653

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.96  E-value=1.2e-27  Score=270.93  Aligned_cols=364  Identities=17%  Similarity=0.189  Sum_probs=291.4

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      .+..|...+.++      .+.+....++..|+.++.   +..++..+.+.|+||.|+++|++.   +..++..|+++|.+
T Consensus       193 ~i~~Lv~~L~~~------~d~~vr~~Aa~aL~~Ls~---~~~~~~~i~~~g~I~~Lv~lL~~~---~~~v~~~A~~aL~n  260 (780)
T 2z6g_A          193 MVSAIVRTMQNT------NDVETARCTSGTLHNLSH---HREGLLAIFKSGGIPALVNMLGSP---VDSVLFHAITTLHN  260 (780)
T ss_dssp             HHHHHHHHHHHC------CCHHHHHHHHHHHHHHHT---SHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCC------CCHHHHHHHHHHHHHHhC---CchhHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence            466666666541      377888999999999887   577899999999999999999874   67888888888888


Q ss_pred             hhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHH
Q 010019          203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQS  280 (520)
Q Consensus       203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~  280 (520)
                      ++.+. ..+..+++.|+++.|+++|++  .+.++...++.+|.+++..++++|..+++.|+++.|+.+|+.... .....
T Consensus       261 La~~~~~~~~~v~~~g~v~~Lv~lL~~--~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~  338 (780)
T 2z6g_A          261 LLLHQEGAKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT  338 (780)
T ss_dssp             HHHHSTTHHHHHHHTTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHH
T ss_pred             HhCCChhhHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence            87654 335666789999999999985  568888899999999998889999999999999999999998755 45556


Q ss_pred             HHHHHHHhcCCCCcchhhhhhchHHHHHHHcC---------------------------------------CHHHHHHHH
Q 010019          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIG---------------------------------------IARALVHSL  321 (520)
Q Consensus       281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g---------------------------------------~l~~Lv~lL  321 (520)
                      ++.+|++|+..++++.          .+++.|                                       +++.|+.+|
T Consensus       339 a~~aL~~Ls~~~~~~~----------~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL  408 (780)
T 2z6g_A          339 TSRVLKVLSVCSSNKP----------AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL  408 (780)
T ss_dssp             HHHHHHHHHTSTTHHH----------HHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT
T ss_pred             HHHHHHHhhcChHHHH----------HHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHH
Confidence            8999999998765544          233333                                       455666666


Q ss_pred             hcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-Cc---hHHHHH
Q 010019          322 HAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DS---NKSAII  396 (520)
Q Consensus       322 ~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~-~~---~k~~Iv  396 (520)
                      +. .+..++..++++|++|+. ++++++.+++.||++.|+++|....+.  ..++..|+++|++|+.. ++   .+..++
T Consensus       409 ~~-~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~--~~v~~~Al~aL~nL~~~~~~~~~~~~~v~  485 (780)
T 2z6g_A          409 GS-DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR--EDITEPAICALRHLTSRHQDAEMAQNAVR  485 (780)
T ss_dssp             TC-SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTSSSTTHHHHHHHHH
T ss_pred             cC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCH--HHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence            53 357788999999999995 568899999999999999999874332  37999999999999864 33   356788


Q ss_pred             hcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCC--------------------
Q 010019          397 ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFP--------------------  456 (520)
Q Consensus       397 ~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~--------------------  456 (520)
                      +.|+++.|+++|.. .+.+.+++.+||+|+||+. +++++..+.+.|+++.|+++|....                    
T Consensus       486 ~~~~l~~L~~lL~~-~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~  563 (780)
T 2z6g_A          486 LHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV  563 (780)
T ss_dssp             HTTCHHHHHHTTST-TCCHHHHHHHHHHHHHHHS-SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTC
T ss_pred             HcCCHHHHHHHhcC-CChHHHHHHHHHHHHHHhc-CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhccc
Confidence            99999999999972 3456999999999999996 6778889999999999999996521                    


Q ss_pred             CCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHcCCC
Q 010019          457 NAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRDLGLD  516 (520)
Q Consensus       457 ~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~Lg~~  516 (520)
                      ....++..++.+|++|+ .+++++..+.+.|+.+.|..++... +..+..|..||.+|..+
T Consensus       564 ~~~~v~~~a~~aL~~La-~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~  623 (780)
T 2z6g_A          564 RMEEIVEACTGALHILA-RDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  623 (780)
T ss_dssp             CHHHHHHHHHHHHHHHT-TSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred             ChHHHHHHHHHHHHHHh-cChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence            12456777888899995 6789999999999988888877543 35677788899888643

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=3.3e-26  Score=221.49  Aligned_cols=240  Identities=18%  Similarity=0.283  Sum_probs=214.1

Q ss_pred             CCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcch
Q 010019          217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV  296 (520)
Q Consensus       217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v  296 (520)
                      |+++.|+++|++  ++++++..++++|.+++..++.++..+++.|+++.|+++|++.+.+++..++++|.+|+.+++   
T Consensus         2 ~~i~~L~~~L~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---   76 (252)
T 4hxt_A            2 NDVEKLVKLLTS--TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD---   76 (252)
T ss_dssp             CHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---
T ss_pred             CcHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh---
Confidence            568999999975  458999999999999998888899999999999999999998877899999999999998642   


Q ss_pred             hhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHH
Q 010019          297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA  375 (520)
Q Consensus       297 ~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~  375 (520)
                            ++.+.+.+.|+++.|+.+|++ +++.++..++++|++|+ .+++++..+.+.|+++.|+.+|.+.    +..++
T Consensus        77 ------~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~----~~~~~  145 (252)
T 4hxt_A           77 ------EAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST----DSEVQ  145 (252)
T ss_dssp             ------HHHHHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHH
T ss_pred             ------HHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC----CHHHH
Confidence                  223467789999999999986 46789999999999999 7889999999999999999999863    35899


Q ss_pred             HHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHh
Q 010019          376 RICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK  454 (520)
Q Consensus       376 ~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~  454 (520)
                      ..++++|++|+. +++.+..+++.|+++.|+.+|.  ++++.+++.++++|.+|+..++++++.+.+.|+++.++++|..
T Consensus       146 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~  223 (252)
T 4hxt_A          146 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS  223 (252)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC
Confidence            999999999996 5666688999999999999998  6789999999999999999899999999999999999999964


Q ss_pred             CCCCHHHHHHHHHHHHHHhhhC
Q 010019          455 FPNAQQLQRSSCFMIRNLVARN  476 (520)
Q Consensus       455 ~~~~~~vqk~A~~aL~nL~~~~  476 (520)
                        +++.+++.|+|+|+||+...
T Consensus       224 --~~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          224 --TDSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             --SCHHHHHHHHHHHHHHHHTC
T ss_pred             --CcHHHHHHHHHHHHHHHcCC
Confidence              57899999999999997653

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=6.7e-26  Score=220.50  Aligned_cols=238  Identities=17%  Similarity=0.197  Sum_probs=209.3

Q ss_pred             CCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcch
Q 010019          217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV  296 (520)
Q Consensus       217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v  296 (520)
                      ...+.+++.|.+  ++++++..|+++|.++...++.++..+++.|+++.|+++|++.+.+++..|+++|.+|+.+++   
T Consensus        12 ~~~~~~~~~L~s--~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---   86 (252)
T 4db8_A           12 SELPQMTQQLNS--DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN---   86 (252)
T ss_dssp             CSHHHHHHHHHS--SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH---
T ss_pred             chHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH---
Confidence            357889999984  578899999999987666677889999999999999999998877899999999999998542   


Q ss_pred             hhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhH-HHHHhcCChHHHHHHHhccCCCCcHHHH
Q 010019          297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEIC-KSVAENGGIDALLRCIDDSGLQGNKTVA  375 (520)
Q Consensus       297 ~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~-~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~  375 (520)
                            ++.+.+.+.|+++.|+.+|++ +++.++..++++|++|+.+++++ ..+.+.|+++.|+.+|.+.    +..++
T Consensus        87 ------~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~v~  155 (252)
T 4db8_A           87 ------EQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP----NEQIL  155 (252)
T ss_dssp             ------HHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS----CHHHH
T ss_pred             ------HHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC----CHHHH
Confidence                  233477889999999999997 46789999999999999888877 8999999999999999763    35899


Q ss_pred             HHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHh
Q 010019          376 RICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK  454 (520)
Q Consensus       376 ~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~  454 (520)
                      ..++++|++|+. +++++..+++.|+++.|+++|.  ++++.+++.++++|.+|+..+++++..+.+.|+++.++++|..
T Consensus       156 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~  233 (252)
T 4db8_A          156 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH  233 (252)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC
Confidence            999999999996 5677888899999999999998  6689999999999999999899999999999999999999954


Q ss_pred             CCCCHHHHHHHHHHHHHHhh
Q 010019          455 FPNAQQLQRSSCFMIRNLVA  474 (520)
Q Consensus       455 ~~~~~~vqk~A~~aL~nL~~  474 (520)
                        +++.++++|+|+|.||+.
T Consensus       234 --~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          234 --ENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             --SSSHHHHTHHHHHHTTC-
T ss_pred             --CCHHHHHHHHHHHHHHhc
Confidence              578999999999999963

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.93  E-value=6.6e-25  Score=212.35  Aligned_cols=241  Identities=17%  Similarity=0.295  Sum_probs=214.7

Q ss_pred             CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010019          261 KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV  340 (520)
Q Consensus       261 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~L  340 (520)
                      |+++.|+++|++.+.+++..|+++|.+|+..++         ++.+.+++.|+++.|+.+|++. +..++..++++|++|
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l   71 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPA---------SAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANI   71 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH---------HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc---------HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence            678999999998877888999999999998763         2345788999999999999874 578999999999999


Q ss_pred             ccC-hhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHH
Q 010019          341 AVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVL  418 (520)
Q Consensus       341 a~~-~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~  418 (520)
                      +.+ ++++..+.+.|+++.|+.+|.+.    +.+++..++++|++|+ .+++++..+++.|+++.|+++|+  ++++.++
T Consensus        72 ~~~~~~~~~~~~~~~~i~~l~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~~~  145 (252)
T 4hxt_A           72 ASGPDEAIKAIVDAGGVEVLVKLLTST----DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT--STDSEVQ  145 (252)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHHTTCS----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHH
T ss_pred             HcCChHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHH
Confidence            976 89999999999999999999852    3589999999999999 67899999999999999999998  6789999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHh
Q 010019          419 QEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKEN  498 (520)
Q Consensus       419 ~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~  498 (520)
                      +.++++|++|+..++++...+.+.|+++.++.+|..  +++.+++.|+++|.|++..+++.+..+.+.|+.+.|..++..
T Consensus       146 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~  223 (252)
T 4hxt_A          146 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS  223 (252)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC
Confidence            999999999999899999999999999999999963  678999999999999988899999999999999999888754


Q ss_pred             C-cchHHHHHHHHHHcCCCCCC
Q 010019          499 H-EICKDAATDALRDLGLDDYN  519 (520)
Q Consensus       499 h-~~~~~~a~aALr~Lg~~~~n  519 (520)
                      . +..+..|..+|++|+...++
T Consensus       224 ~~~~v~~~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          224 TDSEVQKEAQRALENIKSGGWL  245 (252)
T ss_dssp             SCHHHHHHHHHHHHHHHHTCBC
T ss_pred             CcHHHHHHHHHHHHHHHcCCCc
Confidence            3 46788899999999866554

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.92  E-value=7.1e-24  Score=206.15  Aligned_cols=237  Identities=19%  Similarity=0.258  Sum_probs=208.7

Q ss_pred             CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010019          261 KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV  340 (520)
Q Consensus       261 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~L  340 (520)
                      ...+.++..|.+.+.+++..|+++|+++...+         .++.+.+++.|+++.|+.+|++. ++.++..++++|++|
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~---------~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l   81 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG---------NEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNI   81 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH---------HHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---------CchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence            45789999999988899999999998765432         12345788999999999999875 578999999999999


Q ss_pred             cc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchH-HHHHhcCCHHHHHHHHhccCCCHHHH
Q 010019          341 AV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK-SAIIENGGMDKLIVVSARFSDDASVL  418 (520)
Q Consensus       341 a~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k-~~Iv~~g~l~~Lv~lL~~~~~~~~v~  418 (520)
                      +. +++++..+++.|+++.|+.+|.+.    +..++..|+++|++|+.+++++ ..+++.|+++.|+++|+  ++++.++
T Consensus        82 ~~~~~~~~~~i~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~  155 (252)
T 4db8_A           82 ASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQIL  155 (252)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHGGGCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG--CSCHHHH
T ss_pred             hcCCHHHHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh--CCCHHHH
Confidence            95 789999999999999999999872    3589999999999999988888 88999999999999998  6789999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHh
Q 010019          419 QEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKEN  498 (520)
Q Consensus       419 ~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~  498 (520)
                      +.++++|++|+..++++...+.+.|+++.++++|..  +++.+++.|+++|.|++..+++.+..+++.|+.+.|..++..
T Consensus       156 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~  233 (252)
T 4db8_A          156 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH  233 (252)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC
Confidence            999999999999899999999999999999999964  489999999999999988899999999999999998888754


Q ss_pred             C-cchHHHHHHHHHHcCC
Q 010019          499 H-EICKDAATDALRDLGL  515 (520)
Q Consensus       499 h-~~~~~~a~aALr~Lg~  515 (520)
                      . +..+..|..||.+|..
T Consensus       234 ~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          234 ENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             SSSHHHHTHHHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            3 4677889999999863

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.91  E-value=2.7e-24  Score=207.69  Aligned_cols=203  Identities=15%  Similarity=0.135  Sum_probs=171.3

Q ss_pred             CcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCC-Ccch
Q 010019          218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD-DDQV  296 (520)
Q Consensus       218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~d-d~~v  296 (520)
                      .+|.+|++|++.+.+.+++..++++|.++|..++.+|..+++.|+||+||++|++++.++++.|+|+|+||+.++ +++ 
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk-   87 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK-   87 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH-
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH-
Confidence            578999999865544589999999999999888999999999999999999999987799999999999999853 343 


Q ss_pred             hhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHh----ccC-----
Q 010019          297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCID----DSG-----  367 (520)
Q Consensus       297 ~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~----~~~-----  367 (520)
                               ..|++.|+||+|+++|++..+.++++.++++||+|+..++++..|++ +|+++|+.++.    ...     
T Consensus        88 ---------~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~  157 (233)
T 3tt9_A           88 ---------LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYP  157 (233)
T ss_dssp             ---------HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCC
T ss_pred             ---------HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccc
Confidence                     37889999999999998655678999999999999999999999997 57999988652    110     


Q ss_pred             ---CCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCC-HHHHHHHHhcc----CCCHHHHHHHHHHHHHHhcC
Q 010019          368 ---LQGNKTVARICCSLLSKLAG-SDSNKSAIIENGG-MDKLIVVSARF----SDDASVLQEVMSIITVLSLR  431 (520)
Q Consensus       368 ---~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~-l~~Lv~lL~~~----~~~~~v~~~a~~aL~nLa~~  431 (520)
                         ...+.+++..|.++|+||+. ++++|..|.+++| |+.|+.+++..    ..+...+|+|+++|+||+.+
T Consensus       158 ~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          158 KANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             cccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence               01246899999999999987 4599999998865 69999999853    12457899999999999985

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.9e-23  Score=227.33  Aligned_cols=322  Identities=12%  Similarity=0.084  Sum_probs=246.5

Q ss_pred             HHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcC-CcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh--
Q 010019          175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGG-GPKLLVNILIDGNEDPEILNSGFAVVAASATGNE--  251 (520)
Q Consensus       175 ip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~g-gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e--  251 (520)
                      .+.+++.|.+.   +.+-+.||++.|+-++.+.+.+..++... .++.|+++++. ..+..+.-.++.++.|++...+  
T Consensus       336 a~~~~~~L~~~---~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~-~~d~s~~Ygal~IL~NLt~~~~~~  411 (778)
T 3opb_A          336 SEIFINAISRR---IVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKS-QKMTHCLYGLLVIMANLSTLPEEX  411 (778)
T ss_dssp             HHHHHHHTTTC---CHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTT-TCCTTHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHhcC---CccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCCccc
Confidence            34444444442   33447899999999987766678887654 49999999975 3456778888999999875222  


Q ss_pred             ------------------------------------hhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcc
Q 010019          252 ------------------------------------VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQ  295 (520)
Q Consensus       252 ------------------------------------~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~  295 (520)
                                                          .+|..+.+.|+++.|+.++++.+..++..|+|+|.+|+.++++|
T Consensus       412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R  491 (778)
T 3opb_A          412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFI  491 (778)
T ss_dssp             CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred             chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence                                                16778889999999999999988889999999999999987776


Q ss_pred             hhhhhhchHHHHHHHcCCHHHHHHHHhcCCCh--hHHHHHHHHHHHhccChhhHHHHHh---cCChHHHHHHHhccCCCC
Q 010019          296 VVASQVYGYARRFAKIGIARALVHSLHAGLSS--PSLISASIALKAVAVNDEICKSVAE---NGGIDALLRCIDDSGLQG  370 (520)
Q Consensus       296 v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~--~~~~~a~~aL~~La~~~e~~~~i~~---~Ggv~~Ll~lL~~~~~~~  370 (520)
                      .          .+++.|++++|+.+|.++++.  ..+..|+.||.+|+...+....+..   .|+|++|+++|...++..
T Consensus       492 ~----------~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~  561 (778)
T 3opb_A          492 P----------QLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVD  561 (778)
T ss_dssp             H----------HHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCS
T ss_pred             H----------HHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcc
Confidence            6          788999999999999987633  2788999999999854433333321   389999999998322211


Q ss_pred             ---------cHHH-HHHHHHHHHHhhCCCc-----hHHHHHhc-CCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHH
Q 010019          371 ---------NKTV-ARICCSLLSKLAGSDS-----NKSAIIEN-GGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE  434 (520)
Q Consensus       371 ---------~~~v-~~~al~aL~~La~~~~-----~k~~Iv~~-g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~  434 (520)
                               -..+ ..+|+.+|.|||+.++     .+..|++. |+++.|.++|.  ++++.++++||++|+||+. +++
T Consensus       562 ~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~--s~n~~VrrAA~elI~NL~~-~~e  638 (778)
T 3opb_A          562 DNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML--DENVPLQRSTLELISNMMS-HPL  638 (778)
T ss_dssp             SCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHT-SGG
T ss_pred             cccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh--CCCHHHHHHHHHHHHHHhC-CcH
Confidence                     0113 5699999999998763     47778885 99999999998  7789999999999999997 677


Q ss_pred             HH-HHHHhcC------cHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhC-CHHHHHHHHHHh---CcchH
Q 010019          435 NA-ARAMEAG------SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSN-GVEKLIRQAKEN---HEICK  503 (520)
Q Consensus       435 ~~-~~i~~~G------~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~-G~~~lL~~~~~~---h~~~~  503 (520)
                      .. +.+...+      .++.++.++.  .++..+|+.|+|||+|+++.++..+..+++. +....+..++..   .++.+
T Consensus       639 ~i~~k~~~~~~~~~~~rL~lLV~Ll~--s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~  716 (778)
T 3opb_A          639 TIAAKFFNLENPQSLRNFNILVKLLQ--LSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELR  716 (778)
T ss_dssp             GTGGGTSCCSSHHHHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHhhcCchhhccHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHH
Confidence            64 4554332      3778998884  4899999999999999988899999999998 454444455544   24566


Q ss_pred             HHHHHHHHHcCC
Q 010019          504 DAATDALRDLGL  515 (520)
Q Consensus       504 ~~a~aALr~Lg~  515 (520)
                      .-+..+|++|.+
T Consensus       717 ~R~~~~l~NL~~  728 (778)
T 3opb_A          717 QRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            679999999986

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.90  E-value=1.3e-23  Score=202.97  Aligned_cols=200  Identities=15%  Similarity=0.138  Sum_probs=169.1

Q ss_pred             CHHHHHHHHhcCCh--HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHH
Q 010019          262 IDELILEILSRQRN--DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKA  339 (520)
Q Consensus       262 ~i~~Lv~lL~~~~~--~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~  339 (520)
                      .++.||++|++.+.  +++..|+++|.+|+..++.         +.+.+.+.|+||+|+++|++. +++++..|+|+|+|
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~---------~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~n   78 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSE---------ARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRN   78 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHH---------HHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcH---------HHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence            58999999998876  7788899999999975431         233778999999999999874 67899999999999


Q ss_pred             hcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHh----c----
Q 010019          340 VAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA----R----  410 (520)
Q Consensus       340 La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~----~----  410 (520)
                      |+. +++++..|++.|||++|+++|....   +.++++.++++|++|+..+++|..|++ +|+++|++++.    .    
T Consensus        79 La~~~~~nk~~I~~~GaI~~Lv~lL~~~~---~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~  154 (233)
T 3tt9_A           79 LVFEDNDNKLEVAELNGVPRLLQVLKQTR---DLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEG  154 (233)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGG
T ss_pred             HHhCCHHHHHHHHHcCCHHHHHHHHccCC---CHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCccc
Confidence            996 6899999999999999999998532   248999999999999999999999998 57999998652    1    


Q ss_pred             ------cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhc-CcHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhhh
Q 010019          411 ------FSDDASVLQEVMSIITVLSLRSPENAARAMEA-GSGDLAIQAMLK----FPNAQQLQRSSCFMIRNLVAR  475 (520)
Q Consensus       411 ------~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~-G~i~~lv~~L~~----~~~~~~vqk~A~~aL~nL~~~  475 (520)
                            +..++.++++|.++|+||+..++++++.+.++ |+++.|+.+++.    ...+.+.+++|..+|+||+.+
T Consensus       155 ~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          155 DYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             GCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             ccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence                  12377999999999999998889999999987 457999999875    233557889999999999654

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.5e-22  Score=222.64  Aligned_cols=352  Identities=14%  Similarity=0.084  Sum_probs=271.6

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHh-cCcHHHHHHHHhhcccCcHHHHHHH
Q 010019          118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSC  196 (520)
Q Consensus       118 ~~~~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~-~Gaip~Lv~lL~~~~~~~~~~~~~a  196 (520)
                      ..+..+.+.++..+.+       .+.+.+..|++.|.-+..   ++.-|..+++ .|+++.|+++++..  .+..+.-.+
T Consensus       330 ~si~~La~~~~~~L~~-------~~~~~~~~AvEgLaYLSl---~~~VKe~L~~d~~~L~~Lv~llk~~--~d~s~~Yga  397 (778)
T 3opb_A          330 INLKQLSEIFINAISR-------RIVPKVEMSVEALAYLSL---KASVKIMIRSNESFTEILLTMIKSQ--KMTHCLYGL  397 (778)
T ss_dssp             CCHHHHHHHHHHHTTT-------CCHHHHHHHHHHHHHHTT---SSHHHHHHHHCHHHHHHHHHHHTTT--CCTTHHHHH
T ss_pred             CcHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHHhC---CHHHHHHHHhCHHHHHHHHHHHhCC--CCchHHHHH
Confidence            3455677778888776       455568888888888877   6777787777 56699999999853  255677788


Q ss_pred             HHHHHHhhcccc---------------------------------------cchhHHhcCCcHHHHHHHhcCCCChHHHH
Q 010019          197 LKTMALLVHDVQ---------------------------------------STETFRTGGGPKLLVNILIDGNEDPEILN  237 (520)
Q Consensus       197 l~~La~l~~~~~---------------------------------------~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~  237 (520)
                      +..|+++++..+                                       .+..+++.|+++.|+.++++  .++.++.
T Consensus       398 l~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S--~s~~~re  475 (778)
T 3opb_A          398 LVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHN--LSPNCKQ  475 (778)
T ss_dssp             HHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG--SCHHHHH
T ss_pred             HHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcC--CCHHHHH
Confidence            888888875332                                       12344577999999999975  5789999


Q ss_pred             HHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh---HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCH
Q 010019          238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN---DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIA  314 (520)
Q Consensus       238 ~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~---~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l  314 (520)
                      .++++|.+++. +..+|..+++.|++++|+.+|.++..   ....+|+++|.+|+...++...|+.. .      -.|++
T Consensus       476 ~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~-~------~~~aI  547 (778)
T 3opb_A          476 QVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKY-S------ALNAI  547 (778)
T ss_dssp             HHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSS-C------STTHH
T ss_pred             HHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCC-c------cccch
Confidence            99999999975 58899999999999999999998754   27788999999999777776644320 0      03899


Q ss_pred             HHHHHHHhcCCChh------------H-HHHHHHHHHHhccCh-----hhHHHHHhc-CChHHHHHHHhccCCCCcHHHH
Q 010019          315 RALVHSLHAGLSSP------------S-LISASIALKAVAVND-----EICKSVAEN-GGIDALLRCIDDSGLQGNKTVA  375 (520)
Q Consensus       315 ~~Lv~lL~~~~~~~------------~-~~~a~~aL~~La~~~-----e~~~~i~~~-Ggv~~Ll~lL~~~~~~~~~~v~  375 (520)
                      ++|+++|..++...            . +.+|+.||.|||..+     +.++.|++. |+++.|.++|.+.    +..++
T Consensus       548 ~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~----n~~Vr  623 (778)
T 3opb_A          548 PFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE----NVPLQ  623 (778)
T ss_dssp             HHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS----SHHHH
T ss_pred             HHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC----CHHHH
Confidence            99999998322211            2 568999999999764     457888985 9999999999862    35899


Q ss_pred             HHHHHHHHHhhCCCchH-HHHHhcC------CHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhc-CcHHH
Q 010019          376 RICCSLLSKLAGSDSNK-SAIIENG------GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA-GSGDL  447 (520)
Q Consensus       376 ~~al~aL~~La~~~~~k-~~Iv~~g------~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~-G~i~~  447 (520)
                      ++|+.+|+||+.+++.. ..+.+.+      +++.|+.+++  +++..++++|+|+|+|++..++..++.+++. ++++.
T Consensus       624 rAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~--s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~  701 (778)
T 3opb_A          624 RSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQ--LSDVESQRAVAAIFANIATTIPLIAKELLTKKELIEN  701 (778)
T ss_dssp             HHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHH
Confidence            99999999999988864 3454322      4889999998  7899999999999999987799999999998 79999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHhhh-----ChhhHHHHHhC-CHHHHHHHHHH
Q 010019          448 AIQAMLKFPNAQQLQRSSCFMIRNLVAR-----NPENRKLLLSN-GVEKLIRQAKE  497 (520)
Q Consensus       448 lv~~L~~~~~~~~vqk~A~~aL~nL~~~-----~~e~~~~l~~~-G~~~lL~~~~~  497 (520)
                      ++.+++.-.++.+++..+..+++||+..     ..+....+.+. .....+..+++
T Consensus       702 Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk  757 (778)
T 3opb_A          702 AIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLK  757 (778)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHS
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHh
Confidence            9999987546899999999999999852     22344455522 44455555553

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.89  E-value=3.8e-22  Score=188.63  Aligned_cols=198  Identities=19%  Similarity=0.247  Sum_probs=173.9

Q ss_pred             hcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHH
Q 010019          259 ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK  338 (520)
Q Consensus       259 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~  338 (520)
                      ..|..+.|+.+|++.+.+++..|+++|.+|+..++.         +.+.+.+.|+++.|+++|++. ++.++..++++|+
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~---------~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~   79 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNE---------QIQAVIDAGALPALVQLLSSP-NEQILQEALWALS   79 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH---------HHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHH---------HHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            457899999999987779999999999999965432         234778899999999999874 6789999999999


Q ss_pred             Hhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHH
Q 010019          339 AVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDAS  416 (520)
Q Consensus       339 ~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~  416 (520)
                      +|+ .++++++.+++.|+++.|+.+|.+.    +..++..|+++|++|+. +++.+..+++.|+++.|+++|+  ++++.
T Consensus        80 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~  153 (210)
T 4db6_A           80 NIASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQ  153 (210)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHH
T ss_pred             HHhcCCcHHHHHHHHCCCHHHHHHHHcCC----cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc--CCCHH
Confidence            999 5788999999999999999999863    35899999999999994 5677788999999999999998  67899


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019          417 VLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (520)
Q Consensus       417 v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~  474 (520)
                      +++.++++|++|+..+++++..+.+.|+++.+++++..  +++.++++|+++|++|+.
T Consensus       154 v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          154 ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH--ENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHhc
Confidence            99999999999999889999999999999999999964  689999999999999953

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.88  E-value=1.1e-21  Score=185.43  Aligned_cols=196  Identities=20%  Similarity=0.307  Sum_probs=175.3

Q ss_pred             HcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-C
Q 010019          310 KIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-G  387 (520)
Q Consensus       310 ~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~  387 (520)
                      ..|+.+.|+.+|++ .++.++..++++|++|+ .+++++..+++.|+++.|+++|.+.    +..++..|+++|++|+ +
T Consensus        10 ~~~~~~~l~~LL~s-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~   84 (210)
T 4db6_A           10 HGSELPQMVQQLNS-PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASG   84 (210)
T ss_dssp             ---CHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHTTS
T ss_pred             ccchhHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhcC
Confidence            35789999999986 46889999999999999 6788999999999999999999863    3589999999999999 5


Q ss_pred             CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHH
Q 010019          388 SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCF  467 (520)
Q Consensus       388 ~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~  467 (520)
                      +++++..+++.|+++.|+.+|+  ++++.+++.++++|+||+..++++...+++.|+++.++++|..  ++..+++.|+|
T Consensus        85 ~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~  160 (210)
T 4db6_A           85 GNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALW  160 (210)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHH
T ss_pred             CcHHHHHHHHCCCHHHHHHHHc--CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC--CCHHHHHHHHH
Confidence            7789999999999999999998  6689999999999999999899999999999999999999964  58899999999


Q ss_pred             HHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHHHHcC
Q 010019          468 MIRNLVARNPENRKLLLSNGVEKLIRQAKENH-EICKDAATDALRDLG  514 (520)
Q Consensus       468 aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aALr~Lg  514 (520)
                      +|.|++..+++.+..+.+.|+.+.|..++... +..+..|..||++|.
T Consensus       161 aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             HHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            99999888899999999999999998887643 467888999999986

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.87  E-value=7.9e-21  Score=190.51  Aligned_cols=213  Identities=16%  Similarity=0.151  Sum_probs=175.3

Q ss_pred             HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHH-HHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhc
Q 010019          276 DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVH-SLHAGLSSPSLISASIALKAVAV-NDEICKSVAEN  353 (520)
Q Consensus       276 ~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~-lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~  353 (520)
                      +....|...|..|+.+.|          ++..|.+.|++|+|+. +|++ +++.++..|+|+|++++. ++++++.+++.
T Consensus        55 e~k~~Al~~L~~lv~~~d----------na~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~  123 (296)
T 1xqr_A           55 QEREGALELLADLCENMD----------NAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGL  123 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHH----------HHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhChh----------hHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence            445567888888887544          3557889999999999 9985 568899999999999995 56778889999


Q ss_pred             CChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 010019          354 GGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRS  432 (520)
Q Consensus       354 Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~  432 (520)
                      ||+++|+.+|+..+   +..+++.|+++|++|+. ++...+.++++||++.|+.+|+  ++++.++..+||+|++|+.++
T Consensus       124 g~l~~Ll~LL~~~~---~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~--~~d~~v~~~A~~aLs~L~~~~  198 (296)
T 1xqr_A          124 GALRKLLRLLDRDA---CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ--QQVQKLKVKSAFLLQNLLVGH  198 (296)
T ss_dssp             THHHHHHHHHHHCS---CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHccCC---CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCC
Confidence            99999999998632   24899999999999984 5677888999999999999998  679999999999999999989


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHh--CCHHHHHHHHHHh---CcchHHHH
Q 010019          433 PENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLS--NGVEKLIRQAKEN---HEICKDAA  506 (520)
Q Consensus       433 ~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~--~G~~~lL~~~~~~---h~~~~~~a  506 (520)
                      ++++..+++.|+++.|+.+|..  .+..+++.|+++|.||+...+........  .....+|...+..   |..|+++-
T Consensus       199 ~~~~~~vv~~g~i~~Lv~LL~~--~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~  275 (296)
T 1xqr_A          199 PEHKGTLCSMGMVQQLVALVRT--EHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEEL  275 (296)
T ss_dssp             GGGHHHHHHTTHHHHHHHHHTS--CCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHcC--CChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHH
Confidence            9999999999999999999954  57889999999999998776655554433  2355666555444   44577653

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.86  E-value=2.8e-20  Score=186.48  Aligned_cols=223  Identities=13%  Similarity=0.138  Sum_probs=175.7

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHH-HHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcC
Q 010019          234 EILNSGFAVVAASATGNEVVKESYMELKIDELILE-ILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG  312 (520)
Q Consensus       234 ~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g  312 (520)
                      +-...|+..|..++. +.+|...|.+.|++++|+. +|++....++..|+|+|++++.+++.         ..+.+++.|
T Consensus        55 e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~---------~~~~vv~~g  124 (296)
T 1xqr_A           55 QEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAA---------IQEQVLGLG  124 (296)
T ss_dssp             HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH---------HHHHHHHCC
Confidence            445678888888875 5568889999999999999 99987779999999999999986532         233677899


Q ss_pred             CHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCc
Q 010019          313 IARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDS  390 (520)
Q Consensus       313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~  390 (520)
                      ++|+|+.+|++.++..+++.|+|||++|+. ++...+.+.+.||++.|+.+|.+.    +..++..+|++|++|+ ++++
T Consensus       125 ~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~----d~~v~~~A~~aLs~L~~~~~~  200 (296)
T 1xqr_A          125 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ----VQKLKVKSAFLLQNLLVGHPE  200 (296)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHCGG
T ss_pred             CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHhCChH
Confidence            999999999976567899999999999995 566778899999999999999862    3589999999999998 5678


Q ss_pred             hHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhc--Cc---HHHHHHHHHhCCCCHHHHHHH
Q 010019          391 NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA--GS---GDLAIQAMLKFPNAQQLQRSS  465 (520)
Q Consensus       391 ~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~--G~---i~~lv~~L~~~~~~~~vqk~A  465 (520)
                      .+..+++.|+++.|+.+|.  ++++.+++.++.+|.+|+...+.....+...  ..   ++...+.++.|..+.++.+.|
T Consensus       201 ~~~~vv~~g~i~~Lv~LL~--~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~  278 (296)
T 1xqr_A          201 HKGTLCSMGMVQQLVALVR--TEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFC  278 (296)
T ss_dssp             GHHHHHHTTHHHHHHHHHT--SCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHc--CCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            8999999999999999998  6788999999999999998766555544321  11   222233344343344555556


Q ss_pred             HHHHHHH
Q 010019          466 CFMIRNL  472 (520)
Q Consensus       466 ~~aL~nL  472 (520)
                      ...|.++
T Consensus       279 ~~il~~~  285 (296)
T 1xqr_A          279 EKLLQTC  285 (296)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555555

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.66  E-value=4.5e-14  Score=152.00  Aligned_cols=344  Identities=12%  Similarity=0.090  Sum_probs=255.1

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHH
Q 010019          118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCL  197 (520)
Q Consensus       118 ~~~~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al  197 (520)
                      ..+.+.|+.|...+++.      .-.+....|+..|+.++++     +|..+ -++|+|.|+..|+... .|.++...+|
T Consensus        17 qs~~etI~~L~~Rl~~~------tl~eDRR~Av~~Lk~~sk~-----y~~~V-g~~~l~~li~~L~~d~-~D~e~v~~~L   83 (651)
T 3grl_A           17 HTEAETIQKLCDRVASS------TLLDDRRNAVRALKSLSKK-----YRLEV-GIQAMEHLIHVLQTDR-SDSEIIGYAL   83 (651)
T ss_dssp             -CHHHHHHHHHHHHHHC------CSHHHHHHHHHHHHHTTTT-----TTTHH-HHHTHHHHHHHHHSCT-TCHHHHHHHH
T ss_pred             CChhhHHHHHHHHHhhc------cchhHHHHHHHHHHHHHHH-----hHHHh-hhhhHHHHHHHHhccc-ccHHHHHHHH
Confidence            34556788888777763      5578889999999998875     55444 4678999999998753 5778888899


Q ss_pred             HHHHHhhccccc------------------chhHH-hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh-hHHHH
Q 010019          198 KTMALLVHDVQS------------------TETFR-TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV-VKESY  257 (520)
Q Consensus       198 ~~La~l~~~~~~------------------~~~i~-~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~-nr~~i  257 (520)
                      .+|.++....+.                  .+.|. +.++++.|+.+|+  +.+-.+...++..|..+|...+. +++.|
T Consensus        84 etL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~--~~df~vR~~alqlL~~L~~~r~~~~Q~~I  161 (651)
T 3grl_A           84 DTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE--EFDFHVRWPGVKLLTSLLKQLGPQVQQII  161 (651)
T ss_dssp             HHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             HHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc--CccHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            999776543211                  11232 4578999999997  45788888999999999877666 78888


Q ss_pred             Hhc-CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHH-HcCCHHHHHHHHhcCC--C-hhHHHH
Q 010019          258 MEL-KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGL--S-SPSLIS  332 (520)
Q Consensus       258 ~~~-g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~-~~g~l~~Lv~lL~~~~--~-~~~~~~  332 (520)
                      ... ++++.|+.+|....+.++..+..+|.+|+.++.          +.++++ -+|+++.|+++++...  + ..+..+
T Consensus       162 l~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~----------~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~D  231 (651)
T 3grl_A          162 LVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNG----------AIQKIVAFENAFERLLDIITEEGNSDGGIVVED  231 (651)
T ss_dssp             HHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCH----------HHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHH
T ss_pred             HhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCH----------HHHHHHHHhccHHHHHHHHHhcCCCccchhHHH
Confidence            866 899999999987544444449999999998653          234555 5699999999998743  1 356789


Q ss_pred             HHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCC--CcHHHHHH---HHHHHHHhhCC-------CchHHHHHhcC
Q 010019          333 ASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQ--GNKTVARI---CCSLLSKLAGS-------DSNKSAIIENG  399 (520)
Q Consensus       333 a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~--~~~~v~~~---al~aL~~La~~-------~~~k~~Iv~~g  399 (520)
                      ++..|.+|. .|..|...+.+.|+++.|..+|....+.  .......+   ++.+++.|...       ..|..++.+.|
T Consensus       232 CL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g  311 (651)
T 3grl_A          232 CLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCG  311 (651)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCC
Confidence            999999999 5667888999999999999998642211  01123334   66777777533       24677899999


Q ss_pred             CHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC-----cHHHHHHH---HHhCCCCHHHHHHHHHHHHH
Q 010019          400 GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG-----SGDLAIQA---MLKFPNAQQLQRSSCFMIRN  471 (520)
Q Consensus       400 ~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G-----~i~~lv~~---L~~~~~~~~vqk~A~~aL~n  471 (520)
                      +++.|++++....-...++..|+.+++.+..+++.++..+....     ..+.++.+   |-.......++-.||..+..
T Consensus       312 ~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~a  391 (651)
T 3grl_A          312 LLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQC  391 (651)
T ss_dssp             HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            99999999985444688999999999999999999999887643     11233332   22223457788889999999


Q ss_pred             HhhhChhhHHHHHhC
Q 010019          472 LVARNPENRKLLLSN  486 (520)
Q Consensus       472 L~~~~~e~~~~l~~~  486 (520)
                      ...+|++.+..++..
T Consensus       392 y~~~N~~~Q~~i~~~  406 (651)
T 3grl_A          392 FLYKNQKGQGEIVST  406 (651)
T ss_dssp             HHTTCHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHh
Confidence            998999877777754

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.61  E-value=5.5e-14  Score=151.33  Aligned_cols=300  Identities=12%  Similarity=0.117  Sum_probs=226.1

Q ss_pred             cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh-
Q 010019          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV-  252 (520)
Q Consensus       174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~-  252 (520)
                      .|+.|++=+++.+  -.+-...|+..|-++..+.   +.-+.++|++.|+..|++..+|.++...++.+|.++...++. 
T Consensus        22 tI~~L~~Rl~~~t--l~eDRR~Av~~Lk~~sk~y---~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~   96 (651)
T 3grl_A           22 TIQKLCDRVASST--LLDDRRNAVRALKSLSKKY---RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE   96 (651)
T ss_dssp             HHHHHHHHHHHCC--SHHHHHHHHHHHHHTTTTT---TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred             HHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHh---HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence            4666666666542  3334556777777777654   566678899999999999889999999999999886554332 


Q ss_pred             ----------------hHHHHH-hcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHc-CCH
Q 010019          253 ----------------VKESYM-ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-GIA  314 (520)
Q Consensus       253 ----------------nr~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~-g~l  314 (520)
                                      +.+.|+ +.+.++.|+++|++.+-.++..+...|..|+.....+        +.+.|... +|+
T Consensus        97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~--------~Q~~Il~~p~gi  168 (651)
T 3grl_A           97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQ--------VQQIILVSPMGV  168 (651)
T ss_dssp             -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHH--------HHHHHHHSTTHH
T ss_pred             cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHhCcccH
Confidence                            233555 4578999999998866688888999999999765332        34566644 999


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHH-hcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchH
Q 010019          315 RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVA-ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNK  392 (520)
Q Consensus       315 ~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~-~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k  392 (520)
                      +.|+++|.+.. ..+..++..+|.+|+.++...++++ -.|+++.|+.++..........++..|+.+|.||. .|+.|+
T Consensus       169 ~~Lv~lL~d~r-E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ  247 (651)
T 3grl_A          169 SRLMDLLADSR-EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQ  247 (651)
T ss_dssp             HHHHGGGGCSS-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhCch-HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHH
Confidence            99999998643 4466778999999996555555555 55999999999986332112478899999999998 467799


Q ss_pred             HHHHhcCCHHHHHHHHhccCC----CHHHHHH---HHHHHHHHhcC------CHHHHHHHHhcCcHHHHHHHHHhCCCCH
Q 010019          393 SAIIENGGMDKLIVVSARFSD----DASVLQE---VMSIITVLSLR------SPENAARAMEAGSGDLAIQAMLKFPNAQ  459 (520)
Q Consensus       393 ~~Iv~~g~l~~Lv~lL~~~~~----~~~v~~~---a~~aL~nLa~~------~~~~~~~i~~~G~i~~lv~~L~~~~~~~  459 (520)
                      ..+.+.|+++.|..+|....+    .+....+   ++.++.-|+..      ++.|+..+.+.|+++.+++++....-..
T Consensus       248 ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~  327 (651)
T 3grl_A          248 NFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPA  327 (651)
T ss_dssp             HHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCH
T ss_pred             HHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCH
Confidence            999999999999999862111    1223344   56667777665      4578889999999999999987654467


Q ss_pred             HHHHHHHHHHHHHhhhChhhHHHHHhCC
Q 010019          460 QLQRSSCFMIRNLVARNPENRKLLLSNG  487 (520)
Q Consensus       460 ~vqk~A~~aL~nL~~~~~e~~~~l~~~G  487 (520)
                      .++.+|..++..+..+|+.++..|.+..
T Consensus       328 ~i~~~Al~tla~~irgN~~~Q~~fa~~~  355 (651)
T 3grl_A          328 DILTETINTVSEVIRGCQVNQDYFASVN  355 (651)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHhhcc
Confidence            8889999999999889999999998753

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.19  E-value=1.2e-10  Score=129.56  Aligned_cols=201  Identities=12%  Similarity=0.077  Sum_probs=152.5

Q ss_pred             CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010019          261 KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV  340 (520)
Q Consensus       261 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~L  340 (520)
                      ..+.++++.|++.+...+..||++|.+|+.+...          .+.+.+.|++.+++.-+-..++.++...|+++|+||
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~----------~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL  103 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKC----------RKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVL  103 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHH----------HHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHH----------HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            3466778889987778899999999999975433          236668899988776544445678999999999999


Q ss_pred             cc--ChhhHHHHHhcCChHHHHHHHhccCC------C-----C--c----HHHHHHHHHHHHHhh-CCCchHHHHHhcCC
Q 010019          341 AV--NDEICKSVAENGGIDALLRCIDDSGL------Q-----G--N----KTVARICCSLLSKLA-GSDSNKSAIIENGG  400 (520)
Q Consensus       341 a~--~~e~~~~i~~~Ggv~~Ll~lL~~~~~------~-----~--~----~~v~~~al~aL~~La-~~~~~k~~Iv~~g~  400 (520)
                      +.  ..+.|..+++.|++++|+.++....+      .     .  .    .++...++.+|++|+ ++++....+.+.|+
T Consensus       104 ~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~  183 (684)
T 4gmo_A          104 AQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQT  183 (684)
T ss_dssp             HHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHH
T ss_pred             HhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhccc
Confidence            94  57899999999999999999864210      0     0  0    245567899999998 56677778999999


Q ss_pred             HHHHHHHHhcc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHH--HHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019          401 MDKLIVVSARF-SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDL--AIQAMLKFPNAQQLQRSSCFMIRNLV  473 (520)
Q Consensus       401 l~~Lv~lL~~~-~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~--lv~~L~~~~~~~~vqk~A~~aL~nL~  473 (520)
                      ++.|+..|... .....++..++.+|.+|+..+++..+.+.+.|....  ++..+..+..  ..+..+|+.|.|+.
T Consensus       184 l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~--~~~~la~giL~Ni~  257 (684)
T 4gmo_A          184 ILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD--PRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC--TTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc--HHHHHHHHHHHhHh
Confidence            99999988533 345789999999999999999999999998875332  2222334432  34568999999984

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.17  E-value=3.7e-10  Score=128.60  Aligned_cols=337  Identities=12%  Similarity=0.023  Sum_probs=205.7

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHH--H--HhcCcHHHHHHHHhhcccCcHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAV--A--TKNGGVELVCSICYKMRCGSKRVLDSCLK  198 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~--i--~~~Gaip~Lv~lL~~~~~~~~~~~~~al~  198 (520)
                      .+..|...+.+       ++......++..|..+|+.  .+.....  +  .-.+.+|.|+.++++   .+..+...|++
T Consensus       129 ll~~L~~~l~~-------~~~~~r~~al~~L~~i~~~--~~~~~~~~~~~~~~~~il~~l~~~l~~---~~~~vR~~A~~  196 (852)
T 4fdd_A          129 LLPKLCSLLDS-------EDYNTCEGAFGALQKICED--SAEILDSDVLDRPLNIMIPKFLQFFKH---SSPKIRSHAVA  196 (852)
T ss_dssp             HHHHHHHHHSC-------SSHHHHHHHHHHHHHHHHH--HTTHHHHCSSSSCHHHHHHHHTTTTTC---SSHHHHHHHHH
T ss_pred             HHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHH--hHHHhchhhhcchHHHHHHHHHHHhcC---CCHHHHHHHHH
Confidence            57777777766       5666777888888888874  2221100  0  012356777776665   37788888999


Q ss_pred             HHHHhhcccccchhHHh--cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChH
Q 010019          199 TMALLVHDVQSTETFRT--GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRND  276 (520)
Q Consensus       199 ~La~l~~~~~~~~~i~~--~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~  276 (520)
                      +++.+.....  ..+..  ...++.+++++.  .++.++...+++++..++......-...++ +.++.++.+++..+++
T Consensus       197 aL~~~~~~~~--~~~~~~~~~~l~~l~~~~~--d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~  271 (852)
T 4fdd_A          197 CVNQFIISRT--QALMLHIDSFIENLFALAG--DEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDEN  271 (852)
T ss_dssp             HHHTTTTTTC--HHHHTSHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHH
T ss_pred             HHHHHHhccc--HHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHH
Confidence            9988764431  22211  134566666664  457899999999999987644322111112 4778888888876668


Q ss_pred             HHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH---cCCHHHHHHHHh----------cC-----------CChhHHHH
Q 010019          277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK---IGIARALVHSLH----------AG-----------LSSPSLIS  332 (520)
Q Consensus       277 ~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~---~g~l~~Lv~lL~----------~~-----------~~~~~~~~  332 (520)
                      +...|++.+..++.....+           .+.+   ...+|.|+..|.          ..           .+-.+...
T Consensus       272 vr~~a~e~l~~l~~~~~~~-----------~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~  340 (852)
T 4fdd_A          272 VALEACEFWLTLAEQPICK-----------DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKC  340 (852)
T ss_dssp             HHHHHHHHHHHHTTSTTHH-----------HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHH
T ss_pred             HHHHHHHHHHHHhcchhHH-----------HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHH
Confidence            8888999999988643211           1111   134666766662          21           11135667


Q ss_pred             HHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccC
Q 010019          333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS  412 (520)
Q Consensus       333 a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~  412 (520)
                      ++.+|..|+....  ..+.. ..++.+..++.+    .+..+...|+.+|++++........-.-.+.++.++..|+  .
T Consensus       341 a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~----~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~--d  411 (852)
T 4fdd_A          341 SAAALDVLANVYR--DELLP-HILPLLKELLFH----HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS--D  411 (852)
T ss_dssp             HHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTC----SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT--C
T ss_pred             HHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcC----CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC--C
Confidence            8888888873211  11111 234555555543    3468999999999999965432111112356788888887  6


Q ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHH
Q 010019          413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLI  492 (520)
Q Consensus       413 ~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL  492 (520)
                      .++.|+..++++|.+++...+.......-.+.++.+++.|..  +++.|++.||++|.+++...+.....++ .++.+.|
T Consensus       412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d--~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L  488 (852)
T 4fdd_A          412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD--SNKRVQEAACSAFATLEEEACTELVPYL-AYILDTL  488 (852)
T ss_dssp             SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHH
Confidence            689999999999999985221110001112356777777753  5799999999999999754222222222 2445555


Q ss_pred             HHHHHhC
Q 010019          493 RQAKENH  499 (520)
Q Consensus       493 ~~~~~~h  499 (520)
                      ..++..+
T Consensus       489 ~~~l~~~  495 (852)
T 4fdd_A          489 VFAFSKY  495 (852)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            5555554

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.13  E-value=7.6e-10  Score=123.21  Aligned_cols=197  Identities=10%  Similarity=0.052  Sum_probs=154.9

Q ss_pred             CCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHH-HHhccCCCCcHHHHHHHHHHHHHhh--CC
Q 010019          312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR-CIDDSGLQGNKTVARICCSLLSKLA--GS  388 (520)
Q Consensus       312 g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~-lL~~~~~~~~~~v~~~al~aL~~La--~~  388 (520)
                      ..|.||++.|++ +++..+..||++|++|+.+++.++.+...|+|..++. +|.+    .+.+|+.+|+++|+||+  +.
T Consensus        34 ~~i~Pll~~L~S-~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D----~~~~Vr~~A~gaLrnL~~~~g  108 (684)
T 4gmo_A           34 DKILPVLKDLKS-PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTD----NNIDSRAAGWEILKVLAQEEE  108 (684)
T ss_dssp             HTTHHHHHHHSS-SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTC----SCHHHHHHHHHHHHHHHHHSC
T ss_pred             hhHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCC----CCHHHHHHHHHHHHHHHhhcC
Confidence            356677788876 5677899999999999998899999999999988665 4554    23589999999999998  45


Q ss_pred             CchHHHHHhcCCHHHHHHHHhccCCC-------------------HHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHH
Q 010019          389 DSNKSAIIENGGMDKLIVVSARFSDD-------------------ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAI  449 (520)
Q Consensus       389 ~~~k~~Iv~~g~l~~Lv~lL~~~~~~-------------------~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv  449 (520)
                      ++.+..+++.|++++|..+|+.....                   ..+.++++.+|++||..+.+....+...|+++.++
T Consensus       109 ~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~  188 (684)
T 4gmo_A          109 ADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLL  188 (684)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHH
T ss_pred             chHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHH
Confidence            68888999999999999998642110                   24667899999999988888888999999999999


Q ss_pred             HHHHh-CCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHH--HhCc-chHHHHHHHHHHc
Q 010019          450 QAMLK-FPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAK--ENHE-ICKDAATDALRDL  513 (520)
Q Consensus       450 ~~L~~-~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~--~~h~-~~~~~a~aALr~L  513 (520)
                      ..|.. ......++..|+.+|.+++..|++....+.+.|...++..++  ..+. .-...++..|+++
T Consensus       189 ~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni  256 (684)
T 4gmo_A          189 FRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNV  256 (684)
T ss_dssp             HHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHH
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhH
Confidence            98844 334578999999999999989999999999887543332222  2332 3355677888875

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.10  E-value=9.5e-09  Score=100.90  Aligned_cols=228  Identities=11%  Similarity=0.004  Sum_probs=148.3

Q ss_pred             hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCc
Q 010019          215 TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD  294 (520)
Q Consensus       215 ~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~  294 (520)
                      ..+.++.|++.|.  ++++.+...|+++|+.+.  .         .++++.|+.+|++.+..+...|+++|..+...+..
T Consensus        21 ~~~~i~~L~~~L~--~~~~~vr~~A~~~L~~~~--~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           21 KKLNDDELFRLLD--DHNSLKRISSARVLQLRG--G---------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HTSCHHHHHHHTT--CSSHHHHHHHHHHHHHHC--C---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHhhHHHHHHHHH--cCCHHHHHHHHHHHHccC--C---------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            3457888889886  357888888999998764  1         23678899999876667788899999887643321


Q ss_pred             chhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHH
Q 010019          295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKT  373 (520)
Q Consensus       295 ~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~  373 (520)
                                   +.  ..++.|...+...+++.+...++++|+++.. ++....     ..++.|+.+|.+    +++.
T Consensus        88 -------------~~--~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d----~~~~  143 (280)
T 1oyz_A           88 -------------ED--NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFD----KSTN  143 (280)
T ss_dssp             -------------HH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTC----SCHH
T ss_pred             -------------ch--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhC----CCHH
Confidence                         00  1233343333334567788888999988863 222111     235677777664    2457


Q ss_pred             HHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHH
Q 010019          374 VARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAML  453 (520)
Q Consensus       374 v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~  453 (520)
                      +...++.+|+++..          .++++.|+.+|.  .+++.|+..++++|..+...++         ..++.++.++.
T Consensus       144 vR~~a~~aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~  202 (280)
T 1oyz_A          144 VRRATAFAISVIND----------KATIPLLINLLK--DPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQ  202 (280)
T ss_dssp             HHHHHHHHHHTC-------------CCHHHHHHHHT--CSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCC----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhc
Confidence            88888888887653          247888999887  6688899999999988864333         24566666664


Q ss_pred             hCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcchHHHHHHHHHHcC
Q 010019          454 KFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEICKDAATDALRDLG  514 (520)
Q Consensus       454 ~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~~~~~a~aALr~Lg  514 (520)
                      .  .++.|+..|+++|.++.  +++         +.+.|..++. .++....|..||..+|
T Consensus       203 d--~~~~vR~~A~~aL~~~~--~~~---------~~~~L~~~l~-d~~vr~~a~~aL~~i~  249 (280)
T 1oyz_A          203 D--KNEEVRIEAIIGLSYRK--DKR---------VLSVLCDELK-KNTVYDDIIEAAGELG  249 (280)
T ss_dssp             C--SCHHHHHHHHHHHHHTT--CGG---------GHHHHHHHHT-SSSCCHHHHHHHHHHC
T ss_pred             C--CCHHHHHHHHHHHHHhC--CHh---------hHHHHHHHhc-CccHHHHHHHHHHhcC
Confidence            3  56888888888888873  332         3333434432 2445555666666665

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.05  E-value=2e-08  Score=98.52  Aligned_cols=251  Identities=14%  Similarity=0.048  Sum_probs=173.8

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      ++..|...+.+       ++......|+..|..+..             .+++|.|+.+|++.   +..+...|..+|+.
T Consensus        24 ~i~~L~~~L~~-------~~~~vr~~A~~~L~~~~~-------------~~~~~~L~~~l~d~---~~~vR~~A~~aL~~   80 (280)
T 1oyz_A           24 NDDELFRLLDD-------HNSLKRISSARVLQLRGG-------------QDAVRLAIEFCSDK---NYIRRDIGAFILGQ   80 (280)
T ss_dssp             CHHHHHHHTTC-------SSHHHHHHHHHHHHHHCC-------------HHHHHHHHHHHTCS---SHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHc-------CCHHHHHHHHHHHHccCC-------------chHHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence            36677777765       567777777877776542             24789999999864   77788888888887


Q ss_pred             hhcccccchhHHhcCCcHHHHHHHhc---CCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHH
Q 010019          203 LVHDVQSTETFRTGGGPKLLVNILID---GNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQ  279 (520)
Q Consensus       203 l~~~~~~~~~i~~~ggi~~Lv~lL~~---~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~  279 (520)
                      +....         ..++.++.+|.+   ...++.+...++++|+.++..+....     ...++.|+..|++.+..++.
T Consensus        81 l~~~~---------~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~  146 (280)
T 1oyz_A           81 IKICK---------KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRR  146 (280)
T ss_dssp             SCCCT---------TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHH
T ss_pred             hcccc---------ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHH
Confidence            64221         123334444321   24578899999999998764332111     23578888888876668888


Q ss_pred             HHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHH
Q 010019          280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDAL  359 (520)
Q Consensus       280 ~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~L  359 (520)
                      .|+++|..+..                    .++++.|+.+|++ +++.+...++++|..+.....        ..++.|
T Consensus       147 ~a~~aL~~~~~--------------------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~~~--------~~~~~L  197 (280)
T 1oyz_A          147 ATAFAISVIND--------------------KATIPLLINLLKD-PNGDVRNWAAFAININKYDNS--------DIRDCF  197 (280)
T ss_dssp             HHHHHHHTC-----------------------CCHHHHHHHHTC-SSHHHHHHHHHHHHHHTCCCH--------HHHHHH
T ss_pred             HHHHHHHhcCC--------------------HHHHHHHHHHHcC-CCHHHHHHHHHHHHhhccCcH--------HHHHHH
Confidence            89999986642                    2478999999975 467788999999998853221        235677


Q ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Q 010019          360 LRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA  439 (520)
Q Consensus       360 l~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i  439 (520)
                      +.+|.+    .+..+...++.+|+.+.          ....++.|+.+|+  .  +.++..++.+|..+..         
T Consensus       198 ~~~l~d----~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~--d--~~vr~~a~~aL~~i~~---------  250 (280)
T 1oyz_A          198 VEMLQD----KNEEVRIEAIIGLSYRK----------DKRVLSVLCDELK--K--NTVYDDIIEAAGELGD---------  250 (280)
T ss_dssp             HHHTTC----SCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHT--S--SSCCHHHHHHHHHHCC---------
T ss_pred             HHHhcC----CCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhc--C--ccHHHHHHHHHHhcCc---------
Confidence            777764    24589999999999876          2357899999997  2  2388899999998753         


Q ss_pred             HhcCcHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010019          440 MEAGSGDLAIQAMLKFPNAQQLQRSSCFMI  469 (520)
Q Consensus       440 ~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL  469 (520)
                        ...++.|.+++..+++ ..+...+..+|
T Consensus       251 --~~~~~~L~~~l~~~~~-~~~~~~~~~~l  277 (280)
T 1oyz_A          251 --KTLLPVLDTMLYKFDD-NEIITSAIDKL  277 (280)
T ss_dssp             --GGGHHHHHHHHTTSSC-CHHHHHHHHHH
T ss_pred             --hhhhHHHHHHHhcCCC-cHHHHHHHHHh
Confidence              2467888888877654 44555555554

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.91  E-value=6.4e-08  Score=110.06  Aligned_cols=349  Identities=11%  Similarity=0.044  Sum_probs=199.9

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccccc-chhHHhcCCc
Q 010019          141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGP  219 (520)
Q Consensus       141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~-~~~i~~~ggi  219 (520)
                      .+......++..|..++..  ... ...-.-.+.+|.|+.+|+..   ++.+...|.++++.+...... .....-.+.+
T Consensus       371 ~~~~~R~aa~~alg~i~~~--~~~-~~~~~l~~~l~~l~~~l~d~---~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll  444 (852)
T 4fdd_A          371 HEWVVKESGILVLGAIAEG--CMQ-GMIPYLPELIPHLIQCLSDK---KALVRSITCWTLSRYAHWVVSQPPDTYLKPLM  444 (852)
T ss_dssp             SSHHHHHHHHHHHHHTTTT--THH-HHGGGHHHHHHHHHHHTTCS---SHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhc--chH-HHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            4555566677777777764  221 11112245788888888653   667766666666655432100 0111122456


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhh
Q 010019          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVAS  299 (520)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~  299 (520)
                      +.+++.|..  .++.++..++++|.++|......-..+. .+.++.|+.+++.........+..++..++..-..  .+.
T Consensus       445 ~~L~~~L~d--~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~--~~~  519 (852)
T 4fdd_A          445 TELLKRILD--SNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH--HLN  519 (852)
T ss_dssp             HHHHHHHTC--SSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGG--GGC
T ss_pred             HHHHHHHhC--CCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhh--hhc
Confidence            777777753  4789999999999998743221111111 35677788888766544444455555555421000  000


Q ss_pred             hhchHHHHHHHcCCHHHHHHHHhcCC--ChhHHHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhcc---------
Q 010019          300 QVYGYARRFAKIGIARALVHSLHAGL--SSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDS---------  366 (520)
Q Consensus       300 ~a~~~a~~i~~~g~l~~Lv~lL~~~~--~~~~~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~~---------  366 (520)
                      + .    .+.+ ..+|.|++.+....  ++++ ..++.+|..++.  .......+..  .++.++.++...         
T Consensus       520 ~-~----~~~~-~l~p~l~~~~~~l~d~~~~~-~~~~~~l~~i~~~~g~~~~~~~~~--i~~~~~~~l~~~l~~~~~~~~  590 (852)
T 4fdd_A          520 K-P----EYIQ-MLMPPLIQKWNMLKDEDKDL-FPLLECLSSVATALQSGFLPYCEP--VYQRCVNLVQKTLAQAMLNNA  590 (852)
T ss_dssp             C-H----HHHH-HHHHHHHHHHHHSCTTCTTH-HHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-H----HHHH-HHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHhHhHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence            0 0    1221 24677776655433  3444 467777777762  2222222111  234455555431         


Q ss_pred             ----CCCCcHHHHHHHHHHHHHhhC--CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 010019          367 ----GLQGNKTVARICCSLLSKLAG--SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM  440 (520)
Q Consensus       367 ----~~~~~~~v~~~al~aL~~La~--~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~  440 (520)
                          .+.++.+++..++.+|+.++.  .++.+..+.+.+.++.++..+.  ..++.+++.+.++|..++...++.....+
T Consensus       591 ~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~l  668 (852)
T 4fdd_A          591 QPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ--DKMPEVRQSSFALLGDLTKACFQHVKPCI  668 (852)
T ss_dssp             CTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGGGTGGGH
T ss_pred             CCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhC--CCChhHHHHHHHHHHHHHHHhhHHHHHHH
Confidence                112234788899999999973  2444455556688899999887  56799999999999999864444333322


Q ss_pred             hcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHh---CcchHHHHHHHHHHcCC
Q 010019          441 EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKEN---HEICKDAATDALRDLGL  515 (520)
Q Consensus       441 ~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~---h~~~~~~a~aALr~Lg~  515 (520)
                      .. .++.+++.+  ..+++.+.++|+|++..++...++....++. .+.+.|...+..   +....+.+..++..||.
T Consensus       669 ~~-~lp~l~~~l--~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~-~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~  742 (852)
T 4fdd_A          669 AD-FMPILGTNL--NPEFISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGY  742 (852)
T ss_dssp             HH-HHHHHHHTC--CTTSHHHHHHHHHHHHHHHHHHGGGGGGGTH-HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHc--CccchHHHHHHHHHHHHHHHHhhHhHHHHHH-HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHH
Confidence            22 456666666  3357889999999999997543332222222 444444444432   12456667777777763

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.87  E-value=6.2e-08  Score=90.85  Aligned_cols=186  Identities=11%  Similarity=0.081  Sum_probs=143.7

Q ss_pred             CCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcch
Q 010019          217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV  296 (520)
Q Consensus       217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v  296 (520)
                      +.++.|++.|+  +.+..+...++++|+.+..           .++++.|+++|.+.+..+...++++|..+..      
T Consensus        19 ~~~~~L~~~L~--~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           19 EKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             hHHHHHHHHHc--CCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            45788999987  4578999999999876531           3578999999997666888889999987652      


Q ss_pred             hhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHH
Q 010019          297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVAR  376 (520)
Q Consensus       297 ~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~  376 (520)
                                    .+.++.|+.+|++ +++.+...++++|..+..          .+.++.|+.+|.+    ++..+..
T Consensus        80 --------------~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d----~~~~vr~  130 (211)
T 3ltm_A           80 --------------ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD----EDWFVRI  130 (211)
T ss_dssp             --------------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC----SSHHHHH
T ss_pred             --------------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhC----CCHHHHH
Confidence                          2357899999875 467888999999998853          2457888888864    2468999


Q ss_pred             HHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCC
Q 010019          377 ICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFP  456 (520)
Q Consensus       377 ~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~  456 (520)
                      .++.+|+.+..          ...++.|+.+|+  ..++.|+..++.+|..+..           ...++.|..++..  
T Consensus       131 ~a~~aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d--  185 (211)
T 3ltm_A          131 AAAFALGEIGD----------ERAVEPLIKALK--DEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAET--  185 (211)
T ss_dssp             HHHHHHHHHCC----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHH--
T ss_pred             HHHHHHHHcCC----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhC--
Confidence            99999998842          247889999997  6789999999999999853           2356778888875  


Q ss_pred             CCHHHHHHHHHHHHHHhhh
Q 010019          457 NAQQLQRSSCFMIRNLVAR  475 (520)
Q Consensus       457 ~~~~vqk~A~~aL~nL~~~  475 (520)
                      .++.|++.|..+|.++...
T Consensus       186 ~~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          186 GTGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             CCHHHHHHHHHHHHC----
T ss_pred             CCHHHHHHHHHHHHhcCCC
Confidence            5789999999999998543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.84  E-value=1e-07  Score=88.63  Aligned_cols=185  Identities=11%  Similarity=0.090  Sum_probs=144.2

Q ss_pred             cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcc
Q 010019          216 GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQ  295 (520)
Q Consensus       216 ~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~  295 (520)
                      .+..+.+++.|+  +.+..+...++++|..+..           .+.++.|+++|...+..+...|+++|..+..     
T Consensus        13 ~~~~~~~i~~L~--~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-----   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-----   74 (201)
T ss_dssp             HHHHHHHHHHTT--CSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred             CcchHHHHHHhc--CCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence            356778888886  4578999999999986531           2578999999987666788889999987642     


Q ss_pred             hhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHH
Q 010019          296 VVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA  375 (520)
Q Consensus       296 v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~  375 (520)
                                     ..+++.|+.+|.+ +++.+...++++|+.+..          ...++.|+.+|.+    +++.+.
T Consensus        75 ---------------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d----~~~~vr  124 (201)
T 3ltj_A           75 ---------------ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD----EDWFVR  124 (201)
T ss_dssp             ---------------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC----SSHHHH
T ss_pred             ---------------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcC----CCHHHH
Confidence                           2358899999975 567888999999998753          2357788888864    246899


Q ss_pred             HHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhC
Q 010019          376 RICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF  455 (520)
Q Consensus       376 ~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~  455 (520)
                      ..++.+|+.+..          .+.++.|+.++.  ..++.|+..++.+|..+.  ++         ..++.+..++.. 
T Consensus       125 ~~a~~aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d-  180 (201)
T 3ltj_A          125 IAAAFALGEIGD----------ERAVEPLIKALK--DEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAET-  180 (201)
T ss_dssp             HHHHHHHHHHTC----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhCC----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhC-
Confidence            999999998752          357889999997  678999999999999984  22         256777888865 


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q 010019          456 PNAQQLQRSSCFMIRNLV  473 (520)
Q Consensus       456 ~~~~~vqk~A~~aL~nL~  473 (520)
                       .++.|+..|..+|..+-
T Consensus       181 -~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          181 -GTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -CCHHHHHHHHHHHHHCC
T ss_pred             -CCHHHHHHHHHHHHHHH
Confidence             57899999999998873

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.82  E-value=9.9e-08  Score=89.43  Aligned_cols=187  Identities=13%  Similarity=0.096  Sum_probs=143.9

Q ss_pred             cCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 010019          172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE  251 (520)
Q Consensus       172 ~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e  251 (520)
                      .+.++.|+.+|++.   +..+...|+..|+.+..          .++++.|+++|.+  .+..+...++++|+.+..   
T Consensus        18 ~~~~~~L~~~L~~~---~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~---   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDD---SYYVRRAAAYALGKIGD----------ERAVEPLIKALKD--EDAWVRRAAADALGQIGD---   79 (211)
T ss_dssp             GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC--SCHHHHHHHHHHHHHHCC---
T ss_pred             HhHHHHHHHHHcCC---CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcC--CCHHHHHHHHHHHHhhCC---
Confidence            46899999999863   78888888888887542          2467889999873  578999999999987631   


Q ss_pred             hhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHH
Q 010019          252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI  331 (520)
Q Consensus       252 ~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~  331 (520)
                              .++++.|+.+|++.+..++..|+++|..+..                    ...++.|+.+|.+ +++.+..
T Consensus        80 --------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------------------~~~~~~L~~~l~d-~~~~vr~  130 (211)
T 3ltm_A           80 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------------------ERAVEPLIKALKD-EDWFVRI  130 (211)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------GGGHHHHHHHTTC-SSHHHHH
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------------HHHHHHHHHHHhC-CCHHHHH
Confidence                    3578899999987766888889999987753                    2357889998864 5678899


Q ss_pred             HHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhcc
Q 010019          332 SASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF  411 (520)
Q Consensus       332 ~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~  411 (520)
                      .++.+|+++..          ...++.|+.++.+    ++..|...++.+|+.+..          ..+++.|..+++  
T Consensus       131 ~a~~aL~~~~~----------~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~--  184 (211)
T 3ltm_A          131 AAAFALGEIGD----------ERAVEPLIKALKD----EDGWVRQSAADALGEIGG----------ERVRAAMEKLAE--  184 (211)
T ss_dssp             HHHHHHHHHCC----------GGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHH--
T ss_pred             HHHHHHHHcCC----------HHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHh--
Confidence            99999999842          2357888888864    245899999999998843          246778888998  


Q ss_pred             CCCHHHHHHHHHHHHHHhcC
Q 010019          412 SDDASVLQEVMSIITVLSLR  431 (520)
Q Consensus       412 ~~~~~v~~~a~~aL~nLa~~  431 (520)
                      .+++.|+..|..+|..+...
T Consensus       185 d~~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          185 TGTGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             HCCHHHHHHHHHHHHC----
T ss_pred             CCCHHHHHHHHHHHHhcCCC
Confidence            57899999999999988754

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.76  E-value=1.7e-07  Score=87.18  Aligned_cols=185  Identities=13%  Similarity=0.102  Sum_probs=143.8

Q ss_pred             cCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 010019          172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE  251 (520)
Q Consensus       172 ~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e  251 (520)
                      .+..+.++++|++.   +..+...|+..|+.+..          .+.++.|+++|.  ..+..+...++++|+.+..   
T Consensus        13 ~~~~~~~i~~L~~~---~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~--~~~~~vr~~a~~~L~~~~~---   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQDD---SYYVRRAAAYALGKIGD----------ERAVEPLIKALK--DEDAWVRRAAADALGQIGD---   74 (201)
T ss_dssp             HHHHHHHHHHTTCS---CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC---
T ss_pred             CcchHHHHHHhcCC---CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHc--CCCHHHHHHHHHHHHhhCC---
Confidence            46788999999874   78888888888887542          235788999996  4578899999999987531   


Q ss_pred             hhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHH
Q 010019          252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI  331 (520)
Q Consensus       252 ~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~  331 (520)
                              ..+++.|+.+|...+..++..|+++|..+..                    ..+++.|+.+|.+ +++.+..
T Consensus        75 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------------------~~~~~~L~~~l~d-~~~~vr~  125 (201)
T 3ltj_A           75 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------------------ERAVEPLIKALKD-EDWFVRI  125 (201)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------GGGHHHHHHHTTC-SSHHHHH
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------------HHHHHHHHHHHcC-CCHHHHH
Confidence                    2578899999987666888889999987642                    1357889998864 4678889


Q ss_pred             HHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhcc
Q 010019          332 SASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF  411 (520)
Q Consensus       332 ~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~  411 (520)
                      .++++|+.+..          ...++.|+.++.+    ++..+...++.+|+.+..          ..+++.|..+++  
T Consensus       126 ~a~~aL~~~~~----------~~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~--  179 (201)
T 3ltj_A          126 AAAFALGEIGD----------ERAVEPLIKALKD----EDGWVRQSAADALGEIGG----------ERVRAAMEKLAE--  179 (201)
T ss_dssp             HHHHHHHHHTC----------GGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHH--
T ss_pred             HHHHHHHHhCC----------HHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHh--
Confidence            99999998842          3457788888875    245899999999998832          236788888997  


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q 010019          412 SDDASVLQEVMSIITVLS  429 (520)
Q Consensus       412 ~~~~~v~~~a~~aL~nLa  429 (520)
                      ..++.|+..+..+|..|-
T Consensus       180 d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          180 TGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             HCCHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            568999999999998765

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.72  E-value=9.6e-07  Score=96.43  Aligned_cols=305  Identities=11%  Similarity=0.064  Sum_probs=174.0

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Q 010019          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (520)
Q Consensus       124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l  203 (520)
                      +..+...+.+       .++.....|+..+.++++.  +++   .+.+.+.+|.|..+|..   .++.++..|+.+|..+
T Consensus       123 ~~~l~~~L~d-------~~~~VRk~A~~al~~i~~~--~p~---~~~~~~~~~~l~~lL~d---~d~~V~~~A~~aL~~i  187 (591)
T 2vgl_B          123 CEPLRKCLKD-------EDPYVRKTAAVCVAKLHDI--NAQ---MVEDQGFLDSLRDLIAD---SNPMVVANAVAALSEI  187 (591)
T ss_dssp             HHHHHHHSSC-------SCHHHHHHHHHHHHHHHHS--SCC---CHHHHHHHHHHHHTTSC---SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCC-------CChHHHHHHHHHHHHHHhh--Chh---hcccccHHHHHHHHhCC---CChhHHHHHHHHHHHH
Confidence            3446666554       6777778888889888875  443   33345788999999975   3788999999999998


Q ss_pred             hcccccchhH-HhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHH
Q 010019          204 VHDVQSTETF-RTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLY  282 (520)
Q Consensus       204 ~~~~~~~~~i-~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~  282 (520)
                      ..+.+....+ ...+.++.+++.|..  .++..+...+++++..+...+...     ...++.+...|++.+..++.+|+
T Consensus       188 ~~~~~~~~~~~l~~~~~~~Ll~~l~~--~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~  260 (591)
T 2vgl_B          188 SESHPNSNLLDLNPQNINKLLTALNE--CTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAV  260 (591)
T ss_dssp             TTSCCSCCSCCCHHHHHHHHHHHHHH--CCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHH
T ss_pred             HhhCCCccchhccHHHHHHHHHcCCC--CCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHH
Confidence            7654211001 111235667777753  467888888888887764433222     23566777777766668888999


Q ss_pred             HHHHHhcCCC--CcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhH------------
Q 010019          283 DAIRVLLTPD--DDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEIC------------  347 (520)
Q Consensus       283 ~aL~~Ls~~d--d~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~------------  347 (520)
                      +++..+...-  +..        ..+.+. ....++|+.++.  ++++++..++.+|..+.. +++..            
T Consensus       261 ~~i~~l~~~~~~~~~--------~~~~~~-~~~~~~L~~L~~--~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~  329 (591)
T 2vgl_B          261 KVLMKFLELLPKDSD--------YYNMLL-KKLAPPLVTLLS--GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYN  329 (591)
T ss_dssp             HHHHHSCCSCCBTTB--------SHHHHH-HHTHHHHHHHTT--SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTT
T ss_pred             HHHHHHhhccCCCHH--------HHHHHH-HHHHHHHHHHhc--CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccC
Confidence            9999987421  110        111222 235677776653  456777777777777652 22110            


Q ss_pred             ------HH-------HHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCC
Q 010019          348 ------KS-------VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD  414 (520)
Q Consensus       348 ------~~-------i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~  414 (520)
                            ..       ++....++.++.-|..+..+.+.+++..++.+|+.++......    ....++.|+++|+  ...
T Consensus       330 d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~----~~~~v~~Ll~ll~--~~~  403 (591)
T 2vgl_B          330 DPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS----AERCVSTLLDLIQ--TKV  403 (591)
T ss_dssp             SCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHH--TCC
T ss_pred             ChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH----HHHHHHHHHHHHc--ccc
Confidence                  00       1122233333333333322233456666666666666432110    1123456666665  344


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019          415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV  473 (520)
Q Consensus       415 ~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~  473 (520)
                      ..+...+..+|..|..+.|+..     ..+++.+.+.+.. ..++.+...++|+|...+
T Consensus       404 ~~v~~e~i~~l~~ii~~~p~~~-----~~~v~~L~~~l~~-~~~~~~~~~~~wilGey~  456 (591)
T 2vgl_B          404 NYVVQEAIVVIRDIFRKYPNKY-----ESIIATLCENLDS-LDEPDARAAMIWIVGEYA  456 (591)
T ss_dssp             HHHHHHHHHHHHHHHHHSCSSC-----CTTHHHHHHTTTT-CCSHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHCcchH-----HHHHHHHHHHHHh-ccCHHHHHHHHHHHHccc
Confidence            5555555556665554333321     2344555555532 235666667777777664

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.71  E-value=8e-07  Score=97.06  Aligned_cols=271  Identities=11%  Similarity=0.124  Sum_probs=166.6

Q ss_pred             cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 010019          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV  253 (520)
Q Consensus       174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n  253 (520)
                      .+|.+..+|.+   .++.+...|..++..+....+  ..+.+.+.++.+.++|.  +.++.++..|+.+|..++..++..
T Consensus       122 l~~~l~~~L~d---~~~~VRk~A~~al~~i~~~~p--~~~~~~~~~~~l~~lL~--d~d~~V~~~A~~aL~~i~~~~~~~  194 (591)
T 2vgl_B          122 LCEPLRKCLKD---EDPYVRKTAAVCVAKLHDINA--QMVEDQGFLDSLRDLIA--DSNPMVVANAVAALSEISESHPNS  194 (591)
T ss_dssp             HHHHHHHHSSC---SCHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHHTTS--CSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred             HHHHHHHHcCC---CChHHHHHHHHHHHHHHhhCh--hhcccccHHHHHHHHhC--CCChhHHHHHHHHHHHHHhhCCCc
Confidence            35667777765   378888888888877765432  22333456788888885  467899999999999998765432


Q ss_pred             HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHH
Q 010019          254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA  333 (520)
Q Consensus       254 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a  333 (520)
                      ...-...+.+..|+..+...++-.+.....+|..++..++.         ..     ...++.+..+|++ .++.++.+|
T Consensus       195 ~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~---------~~-----~~~l~~l~~~l~~-~~~~V~~ea  259 (591)
T 2vgl_B          195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR---------EA-----QSICERVTPRLSH-ANSAVVLSA  259 (591)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH---------HH-----HHHHHHHTTCSCS-STTHHHHHH
T ss_pred             cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH---------HH-----HHHHHHHHHHHcC-CChHHHHHH
Confidence            10001123466777777665555555677778777744321         11     1246677777764 467899999


Q ss_pred             HHHHHHhcc----ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCch-----------------
Q 010019          334 SIALKAVAV----NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSN-----------------  391 (520)
Q Consensus       334 ~~aL~~La~----~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~-----------------  391 (520)
                      ++++.++..    +++..+.+.. ...+.|+.++.  +   ++.++..++.+|..++. +++.                 
T Consensus       260 ~~~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~--~---d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~  333 (591)
T 2vgl_B          260 VKVLMKFLELLPKDSDYYNMLLK-KLAPPLVTLLS--G---EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIY  333 (591)
T ss_dssp             HHHHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHTT--S---CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHH
T ss_pred             HHHHHHHhhccCCCHHHHHHHHH-HHHHHHHHHhc--C---CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHH
Confidence            999999873    3344443332 33466666543  1   24677777777777752 1110                 


Q ss_pred             --HHH------HHhcCCHHHHHHHHhcc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHH
Q 010019          392 --KSA------IIENGGMDKLIVVSARF--SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQL  461 (520)
Q Consensus       392 --k~~------Iv~~g~l~~Lv~lL~~~--~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~v  461 (520)
                        +.+      +++...++.++.-|..|  ..+..+++.++++|..++.+.+.....     .++.+++++..  ....+
T Consensus       334 Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~-----~v~~Ll~ll~~--~~~~v  406 (591)
T 2vgl_B          334 VKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER-----CVSTLLDLIQT--KVNYV  406 (591)
T ss_dssp             HHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHH-----HHHHHHHHHHT--CCHHH
T ss_pred             HHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHH-----HHHHHHHHHcc--cchHH
Confidence              011      11223344444433333  346788888888888888877655443     35677777764  34556


Q ss_pred             HHHHHHHHHHHhhhChhh
Q 010019          462 QRSSCFMIRNLVARNPEN  479 (520)
Q Consensus       462 qk~A~~aL~nL~~~~~e~  479 (520)
                      .+++..+++++..++|+.
T Consensus       407 ~~e~i~~l~~ii~~~p~~  424 (591)
T 2vgl_B          407 VQEAIVVIRDIFRKYPNK  424 (591)
T ss_dssp             HHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHHHCcch
Confidence            677777888887666654

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.67  E-value=2.9e-06  Score=91.19  Aligned_cols=302  Identities=10%  Similarity=0.009  Sum_probs=187.0

Q ss_pred             cCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccc--hhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 010019          172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST--ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG  249 (520)
Q Consensus       172 ~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~--~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~  249 (520)
                      ...+|.++.+++.   .+..+...|..++..+...-...  ........+|.+.++++  ..+..+...+++++..++..
T Consensus       280 ~~l~~~l~~~l~d---~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~--d~~~~vR~~a~~~l~~l~~~  354 (588)
T 1b3u_A          280 TDLVPAFQNLMKD---CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS--DANQHVKSALASVIMGLSPI  354 (588)
T ss_dssp             HTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT--CSCHHHHHHHHTTGGGGHHH
T ss_pred             hHHHHHHHHHhCC---CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHH
Confidence            3467888888865   36777777777777665432110  00222345677777775  34678888888888776532


Q ss_pred             ChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhH
Q 010019          250 NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS  329 (520)
Q Consensus       250 ~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~  329 (520)
                      -.  ++. .....++.++.+|+....+++..++.+|..++..-..            .......+|.|..++++ .+..+
T Consensus       355 ~~--~~~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~------------~~~~~~~lp~l~~~~~d-~~~~v  418 (588)
T 1b3u_A          355 LG--KDN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI------------RQLSQSLLPAIVELAED-AKWRV  418 (588)
T ss_dssp             HC--HHH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH------------HHHHHHHHHHHHHHHTC-SSHHH
T ss_pred             hh--HhH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH------------HHHHHHHHHHHHHHhcC-CCchH
Confidence            11  111 2234778889999876667877888777766532110            01112357888888765 34567


Q ss_pred             HHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHH
Q 010019          330 LISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVV  407 (520)
Q Consensus       330 ~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~l  407 (520)
                      ...++.+|..++.  ..+.    .....++.++.+|.+    .+..|...++.+|+.++..-.... . ....+|.|+.+
T Consensus       419 r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d----~~~~Vr~~a~~~l~~l~~~~~~~~-~-~~~llp~l~~~  488 (588)
T 1b3u_A          419 RLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVD----HVYAIREAATSNLKKLVEKFGKEW-A-HATIIPKVLAM  488 (588)
T ss_dssp             HHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGC----SSHHHHHHHHHHHHHHHHHHCHHH-H-HHHTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHHhCchh-H-HHHHHHHHHHH
Confidence            7888888888863  2221    111234566666654    235899999999999974321111 1 22467777776


Q ss_pred             HhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCC
Q 010019          408 SARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNG  487 (520)
Q Consensus       408 L~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G  487 (520)
                      ++  ..+..++..++.++..++..-.   ........++.++..+..  .++.|+..+++++..++..-..   .+....
T Consensus       489 ~~--~~~~~~R~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~  558 (588)
T 1b3u_A          489 SG--DPNYLHRMTTLFCINVLSEVCG---QDITTKHMLPTVLRMAGD--PVANVRFNVAKSLQKIGPILDN---STLQSE  558 (588)
T ss_dssp             TT--CSCHHHHHHHHHHHHHHHHHHH---HHHHHHHTHHHHHHGGGC--SCHHHHHHHHHHHHHHGGGSCH---HHHHHH
T ss_pred             hh--CCCHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHHHHHHHhch---hhhHHH
Confidence            65  5678999999999999885211   112223466777777643  5789999999999999753222   223345


Q ss_pred             HHHHHHHHHHh-CcchHHHHHHHHHHcC
Q 010019          488 VEKLIRQAKEN-HEICKDAATDALRDLG  514 (520)
Q Consensus       488 ~~~lL~~~~~~-h~~~~~~a~aALr~Lg  514 (520)
                      +.+.|..++.. .++.+..|..||..|.
T Consensus       559 ~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          559 VKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            56666664322 2456777888887664

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.64  E-value=1.3e-05  Score=87.93  Aligned_cols=287  Identities=10%  Similarity=0.047  Sum_probs=183.6

Q ss_pred             CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 010019          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV  252 (520)
Q Consensus       173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~  252 (520)
                      ..+|.+..+|++.   ++.+...|+.++..+....   ++.++ +.++.+.++|.  ..++.++..|+.++..++..+++
T Consensus       142 ~l~~~l~~~L~~~---~~~VRk~A~~al~~l~~~~---p~~v~-~~~~~l~~lL~--D~d~~V~~~Al~~L~~i~~~~~~  212 (618)
T 1w63_A          142 DLAGEVEKLLKTS---NSYLRKKAALCAVHVIRKV---PELME-MFLPATKNLLN--EKNHGVLHTSVVLLTEMCERSPD  212 (618)
T ss_dssp             HHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHC---GGGGG-GGGGGTTTSTT--CCCHHHHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHC---hHHHH-HHHHHHHHHhC--CCCHhHHHHHHHHHHHHHHhChH
Confidence            3577788888763   7888888888888776543   33332 44556666665  45789999999999998765433


Q ss_pred             hHHHHHhcCCHHHHHHHHhc---------------CChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHH
Q 010019          253 VKESYMELKIDELILEILSR---------------QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARAL  317 (520)
Q Consensus       253 nr~~i~~~g~i~~Lv~lL~~---------------~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~L  317 (520)
                      ....+.  ..++.++.+|..               .++-.+.....+|+.++..+.             ... ...++.|
T Consensus       213 ~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~-------------~~~-~~~~~~L  276 (618)
T 1w63_A          213 MLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD-------------DSS-EAMNDIL  276 (618)
T ss_dssp             HHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH-------------HHH-HTTHHHH
T ss_pred             HHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH-------------HHH-HHHHHHH
Confidence            223332  578889988874               123444557788888886542             111 2355666


Q ss_pred             HHHHhcC-----CChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchH
Q 010019          318 VHSLHAG-----LSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK  392 (520)
Q Consensus       318 v~lL~~~-----~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k  392 (520)
                      ..+++..     .+..++..++.++..+...++...     .+++.|..+|.+. +   +.++..|+.+|..++..   .
T Consensus       277 ~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~L~~~-d---~~vr~~aL~~L~~i~~~---~  344 (618)
T 1w63_A          277 AQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILGRFLLNN-D---KNIRYVALTSLLKTVQT---D  344 (618)
T ss_dssp             HHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHHHTCS-S---TTTHHHHHHHHHHHHHH---H
T ss_pred             HHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHHhCC-C---CchHHHHHHHHHHHHhh---C
Confidence            6666521     124677888899988865443222     3457788887752 2   26888899999888743   1


Q ss_pred             HHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010019          393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL  472 (520)
Q Consensus       393 ~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL  472 (520)
                      ..++. ...+.++..+.  .++..|+..++.+|..|+.  ++|...+     ++.+...+..  .+.++++.+..+|..+
T Consensus       345 p~~~~-~~~~~i~~~l~--d~d~~Ir~~alelL~~l~~--~~nv~~i-----v~eL~~~l~~--~d~e~r~~~v~~I~~l  412 (618)
T 1w63_A          345 HNAVQ-RHRSTIVDCLK--DLDVSIKRRAMELSFALVN--GNNIRGM-----MKELLYFLDS--CEPEFKADCASGIFLA  412 (618)
T ss_dssp             HHHHG-GGHHHHHHGGG--SSCHHHHHHHHHHHHHHCC--SSSTHHH-----HHHHHHHHHH--CCHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHcc--CCChhHHHHHHHHHHHHcc--cccHHHH-----HHHHHHHHHh--CCHHHHHHHHHHHHHH
Confidence            22332 35667777776  6788999999999999884  3444444     3556666654  5788888999999999


Q ss_pred             hhhChhh----HHHHH----hC------CHHHHHHHHHHhCcchHHHHHH
Q 010019          473 VARNPEN----RKLLL----SN------GVEKLIRQAKENHEICKDAATD  508 (520)
Q Consensus       473 ~~~~~e~----~~~l~----~~------G~~~lL~~~~~~h~~~~~~a~a  508 (520)
                      +.+.+..    ...++    ..      .+...++++...+|+.+..+..
T Consensus       413 a~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~  462 (618)
T 1w63_A          413 AEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQ  462 (618)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHH
T ss_pred             HHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHH
Confidence            7653222    12221    12      2445666777777766554433

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.59  E-value=2.2e-06  Score=92.18  Aligned_cols=265  Identities=9%  Similarity=0.018  Sum_probs=165.6

Q ss_pred             cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 010019          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV  253 (520)
Q Consensus       174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n  253 (520)
                      .+|.+..+++.   ++..+...|+.+|+.+.....  ........+|.+..+++  .++..+...++.++..++...+. 
T Consensus       165 l~~~l~~l~~d---~~~~VR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~-  236 (588)
T 1b3u_A          165 LRQYFRNLCSD---DTPMVRRAAASKLGEFAKVLE--LDNVKSEIIPMFSNLAS--DEQDSVRLLAVEACVNIAQLLPQ-  236 (588)
T ss_dssp             HHHHHHHHHTC---SCHHHHHHHHHHHHHHHHTSC--HHHHHHTHHHHHHHHHT--CSCHHHHTTHHHHHHHHHHHSCH-
T ss_pred             HHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHhc--HHhHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHhCCH-
Confidence            45666666654   377888888888887764321  22223445677777775  34678888888888877643221 


Q ss_pred             HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHH
Q 010019          254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA  333 (520)
Q Consensus       254 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a  333 (520)
                       . ......++.+..++...+..++..++.+|..++..-..            .......++.++.+++. +++.+...+
T Consensus       237 -~-~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~------------~~~~~~l~~~l~~~l~d-~~~~vr~~a  301 (588)
T 1b3u_A          237 -E-DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP------------EITKTDLVPAFQNLMKD-CEAEVRAAA  301 (588)
T ss_dssp             -H-HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH------------HHHHHTHHHHHHHHHTC-SSHHHHHHH
T ss_pred             -H-HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc------------ccchhHHHHHHHHHhCC-CcHHHHHHH
Confidence             1 12234677888888765557788899999888742110            11223468899999875 457788889


Q ss_pred             HHHHHHhccC--hhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhcc
Q 010019          334 SIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF  411 (520)
Q Consensus       334 ~~aL~~La~~--~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~  411 (520)
                      +.+|..++..  ++......-...++.+..++.+    .++.+...++.+|..++..-.. ... ....+|.+..+|+  
T Consensus       302 ~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d----~~~~vR~~a~~~l~~l~~~~~~-~~~-~~~l~p~l~~~l~--  373 (588)
T 1b3u_A          302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSD----ANQHVKSALASVIMGLSPILGK-DNT-IEHLLPLFLAQLK--  373 (588)
T ss_dssp             HHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC----SCHHHHHHHHTTGGGGHHHHCH-HHH-HHHTHHHHHHHHT--
T ss_pred             HHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhhH-hHH-HHHHHHHHHHHhC--
Confidence            9999988732  2211111122345667777664    2468999999999998732111 111 2246788888887  


Q ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019          412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (520)
Q Consensus       412 ~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~  474 (520)
                      ..++.|+..++.+|..++......   ......++.+...+..  .+..++..++.+|..++.
T Consensus       374 d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d--~~~~vr~~~~~~l~~l~~  431 (588)
T 1b3u_A          374 DECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAED--AKWRVRLAIIEYMPLLAG  431 (588)
T ss_dssp             CSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHH
Confidence            567899999999988876421110   0112345566665532  567777778887777753

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.59  E-value=6.8e-06  Score=90.19  Aligned_cols=264  Identities=11%  Similarity=0.083  Sum_probs=174.2

Q ss_pred             CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccc-hhHHhcCCcHHHHHHHhcC-------------CCChHHHHH
Q 010019          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVNILIDG-------------NEDPEILNS  238 (520)
Q Consensus       173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~-~~i~~~ggi~~Lv~lL~~~-------------~~~~~v~~~  238 (520)
                      +.++.+..+|..   .++.++..|+.+|..+...++.. ..+  ...++.++++|.+.             ..++..|..
T Consensus       179 ~~~~~l~~lL~D---~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~  253 (618)
T 1w63_A          179 MFLPATKNLLNE---KNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR  253 (618)
T ss_dssp             GGGGGTTTSTTC---CCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred             HHHHHHHHHhCC---CCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence            344455555543   47788989999999887543210 112  35688888888641             347889999


Q ss_pred             HHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcC------ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcC
Q 010019          239 GFAVVAASATGNEVVKESYMELKIDELILEILSRQ------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG  312 (520)
Q Consensus       239 a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~------~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g  312 (520)
                      .+++++.++..++...     ....+.|-.+++..      +..++-.+++++..+....              .+.+ .
T Consensus       254 il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~--------------~l~~-~  313 (618)
T 1w63_A          254 ILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES--------------GLRV-L  313 (618)
T ss_dssp             HHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH--------------HHHH-H
T ss_pred             HHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH--------------HHHH-H
Confidence            9999999886544322     23456666666421      2277778899998875421              1221 3


Q ss_pred             CHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchH
Q 010019          313 IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK  392 (520)
Q Consensus       313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k  392 (520)
                      +++.|..+|.+ ++++++.-++.+|..++....   .+++ .....++.++.+    .+..+...++.+|..|+... |-
T Consensus       314 a~~~L~~~L~~-~d~~vr~~aL~~L~~i~~~~p---~~~~-~~~~~i~~~l~d----~d~~Ir~~alelL~~l~~~~-nv  383 (618)
T 1w63_A          314 AINILGRFLLN-NDKNIRYVALTSLLKTVQTDH---NAVQ-RHRSTIVDCLKD----LDVSIKRRAMELSFALVNGN-NI  383 (618)
T ss_dssp             HHHHHHHHHTC-SSTTTHHHHHHHHHHHHHHHH---HHHG-GGHHHHHHGGGS----SCHHHHHHHHHHHHHHCCSS-ST
T ss_pred             HHHHHHHHHhC-CCCchHHHHHHHHHHHHhhCH---HHHH-HHHHHHHHHccC----CChhHHHHHHHHHHHHcccc-cH
Confidence            57888888875 457788888899988874321   2222 234566777764    23589999999999998643 33


Q ss_pred             HHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010019          393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL  472 (520)
Q Consensus       393 ~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL  472 (520)
                      ..|     ++.|...+.  ..+..++..++.+|..+|.+.+......     ++.++++++...  ..+...+...++.+
T Consensus       384 ~~i-----v~eL~~~l~--~~d~e~r~~~v~~I~~la~k~~~~~~~~-----v~~ll~lL~~~~--~~v~~~~~~~l~~i  449 (618)
T 1w63_A          384 RGM-----MKELLYFLD--SCEPEFKADCASGIFLAAEKYAPSKRWH-----IDTIMRVLTTAG--SYVRDDAVPNLIQL  449 (618)
T ss_dssp             HHH-----HHHHHHHHH--HCCHHHHHHHHHHHHHHHHSSCCCHHHH-----HHHHHHHHHHTG--GGSCSSHHHHHHHH
T ss_pred             HHH-----HHHHHHHHH--hCCHHHHHHHHHHHHHHHHHhCccHHHH-----HHHHHHHHHhcc--chhHHHHHHHHHHH
Confidence            434     357777777  5689999999999999998654443333     567777776632  34555667778888


Q ss_pred             hhhChhhHHHHHh
Q 010019          473 VARNPENRKLLLS  485 (520)
Q Consensus       473 ~~~~~e~~~~l~~  485 (520)
                      ..++|+.+...+.
T Consensus       450 i~~~p~l~~~~v~  462 (618)
T 1w63_A          450 ITNSVEMHAYTVQ  462 (618)
T ss_dssp             HHHSCSTHHHHHH
T ss_pred             HhcChhHHHHHHH
Confidence            7778877665543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.56  E-value=4.8e-06  Score=94.14  Aligned_cols=326  Identities=10%  Similarity=0.022  Sum_probs=189.6

Q ss_pred             HHHHHHHHhhcCCCCCChh--hHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDE--DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTM  200 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~--d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~L  200 (520)
                      .+..|...+.+       +  +......++..|..+++.- +++. ..-.-...++.++..++..+ .+..++..|++++
T Consensus       129 ll~~l~~~l~~-------~~~~~~~r~~al~~l~~l~~~~-~~~~-~~~~~~~ll~~l~~~l~~~~-~~~~vr~~a~~~l  198 (876)
T 1qgr_A          129 LIPQLVANVTN-------PNSTEHMKESTLEAIGYICQDI-DPEQ-LQDKSNEILTAIIQGMRKEE-PSNNVKLAATNAL  198 (876)
T ss_dssp             HHHHHHHHHHC-------TTCCHHHHHHHHHHHHHHHHHS-CHHH-HGGGHHHHHHHHHHHHSTTC-SCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHhc-CHhh-HHhHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHH
Confidence            45556666655       4  6666777888888888630 1111 01111234566666665431 1467778888888


Q ss_pred             HHhhcccccc--hhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHH
Q 010019          201 ALLVHDVQST--ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSI  278 (520)
Q Consensus       201 a~l~~~~~~~--~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~  278 (520)
                      ..+...-...  ........++.+.+.+.  ..+.++...+++++..++......-...+....++.++..+....+++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~  276 (876)
T 1qgr_A          199 LNSLEFTKANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVA  276 (876)
T ss_dssp             HHHGGGCHHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            8765321000  00000112344444443  4567888899999998876544332333444678888888776556778


Q ss_pred             HHHHHHHHHhcCCCC------------cchhhhhhchHHHHHHHcCCHHHHHHHHhcCC------ChhHHHHHHHHHHHh
Q 010019          279 QSLYDAIRVLLTPDD------------DQVVASQVYGYARRFAKIGIARALVHSLHAGL------SSPSLISASIALKAV  340 (520)
Q Consensus       279 ~~a~~aL~~Ls~~dd------------~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~------~~~~~~~a~~aL~~L  340 (520)
                      ..++..+..++....            ...+........+... ...++.++..|....      +..+...++.+|..|
T Consensus       277 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l  355 (876)
T 1qgr_A          277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL  355 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHH
Confidence            888888887764210            0000000011122122 235788888886421      235667788888888


Q ss_pred             ccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCc--hHHHHHhcCCHHHHHHHHhccCCCHHHH
Q 010019          341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS--NKSAIIENGGMDKLIVVSARFSDDASVL  418 (520)
Q Consensus       341 a~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~--~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~  418 (520)
                      +..-.  .     ..++.++..+.....+.++.+...++.+|+.++....  ...... ...++.++..|.  ..++.|+
T Consensus       356 ~~~~~--~-----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~--d~~~~vr  425 (876)
T 1qgr_A          356 ATCCE--D-----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMK--DPSVVVR  425 (876)
T ss_dssp             HHHHG--G-----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHT--CSSHHHH
T ss_pred             HHHCc--H-----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhC--CCCHHHH
Confidence            73211  1     1244445444433223457899999999999986432  222222 246888999987  6689999


Q ss_pred             HHHHHHHHHHhcCCHHHH--HHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 010019          419 QEVMSIITVLSLRSPENA--ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR  475 (520)
Q Consensus       419 ~~a~~aL~nLa~~~~~~~--~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~  475 (520)
                      ..|+++|.+++...+...  .... ...++.++..|..   ++.|+..|+|+|.+++..
T Consensus       426 ~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          426 DTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSA---EPRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTS---CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHH
Confidence            999999999986433210  0000 1245666666643   488999999999999743

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.52  E-value=3.7e-07  Score=95.11  Aligned_cols=283  Identities=6%  Similarity=-0.021  Sum_probs=169.0

Q ss_pred             cCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHH---hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q 010019          172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR---TGGGPKLLVNILIDGNEDPEILNSGFAVVAASAT  248 (520)
Q Consensus       172 ~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~---~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~  248 (520)
                      .+.+|.|+..+++.. .+..+...++.+|..++.+..  ..+.   ....++.++..|.....+.++...+++++.++..
T Consensus       127 ~~ll~~L~~~l~~~~-~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~  203 (462)
T 1ibr_B          127 PELIPQLVANVTNPN-STEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE  203 (462)
T ss_dssp             TTHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHSC--GGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccCC-CCHHHHHHHHHHHHHHHHhCC--chhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            467888888887631 156677778888887775431  1111   1235677778886432368899999999988653


Q ss_pred             CChhhHH-HHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCCh
Q 010019          249 GNEVVKE-SYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS  327 (520)
Q Consensus       249 ~~e~nr~-~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~  327 (520)
                      .-+.+-. .....-.++.|.+.+.....++...++++|..++......  |.   .    ....+.++.++..++. .+.
T Consensus       204 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~---~----~~~~~l~~~~~~~~~~-~~~  273 (462)
T 1ibr_B          204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY--ME---T----YMGPALFAITIEAMKS-DID  273 (462)
T ss_dssp             TTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG--CT---T----TTTTTHHHHHHHHHHC-SSH
T ss_pred             HHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH--HH---H----HHHHHHHHHHHHHHcC-Cch
Confidence            2111110 0001113445555555444577788999998887532111  00   0    0111456677777765 356


Q ss_pred             hHHHHHHHHHHHhccChhhHH------------------HHHh---cCChHHHHHHHhccC---CCCcHHHHHHHHHHHH
Q 010019          328 PSLISASIALKAVAVNDEICK------------------SVAE---NGGIDALLRCIDDSG---LQGNKTVARICCSLLS  383 (520)
Q Consensus       328 ~~~~~a~~aL~~La~~~e~~~------------------~i~~---~Ggv~~Ll~lL~~~~---~~~~~~v~~~al~aL~  383 (520)
                      ++...++..+..++.......                  .+.+   ...++.++..|....   ++.+..+...|+.+|.
T Consensus       274 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~  353 (462)
T 1ibr_B          274 EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLM  353 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHH
Confidence            788888888877764321000                  0111   123455666665421   1112367888999999


Q ss_pred             HhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHhcCcHHHHHHHHHhCCCCHHHH
Q 010019          384 KLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSP-ENAARAMEAGSGDLAIQAMLKFPNAQQLQ  462 (520)
Q Consensus       384 ~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~-~~~~~i~~~G~i~~lv~~L~~~~~~~~vq  462 (520)
                      .|+..-. . .+.. ..++.+...|+  +.+..+++.++.+|..++.+.. +.....+ ...++.++..|..  .++.|+
T Consensus       354 ~l~~~~~-~-~~~~-~~~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d--~~~~Vr  425 (462)
T 1ibr_B          354 LLATCCE-D-DIVP-HVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD--PSVVVR  425 (462)
T ss_dssp             HHHHHTT-T-THHH-HHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGC--SCHHHH
T ss_pred             HHHHhcc-H-HHHH-HHHHHHHHHhc--CCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcC--CCHHHH
Confidence            9874322 1 2222 35566777776  6689999999999999996432 2111111 4567888888854  579999


Q ss_pred             HHHHHHHHHHhhh
Q 010019          463 RSSCFMIRNLVAR  475 (520)
Q Consensus       463 k~A~~aL~nL~~~  475 (520)
                      ..|||+|.+++..
T Consensus       426 ~~a~~~l~~~~~~  438 (462)
T 1ibr_B          426 DTAAWTVGRICEL  438 (462)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999754

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.42  E-value=6.9e-06  Score=92.62  Aligned_cols=326  Identities=12%  Similarity=0.104  Sum_probs=187.0

Q ss_pred             HHHHHHHHHhhcCCCCCChh-hHHHHHHHHHHHHHHhcCCCChhhH-HHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHH
Q 010019          122 QSLERLKQLDLNSKDKFSDE-DLNEMMGLFDKLIELCGGNEGSVNA-AVATKNGGVELVCSICYKMRCGSKRVLDSCLKT  199 (520)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~-d~~~~~~al~~L~~l~~~~~~~~~r-~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~  199 (520)
                      ..+..|...+.+       + +......++..|..+|+.- .+..+ ..-.....++.++..+.... .+..++..++++
T Consensus       134 ~ll~~L~~~l~~-------~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~~~~ll~~l~~~l~~~~-~~~~vr~~al~~  204 (861)
T 2bpt_A          134 ELMKIMVDNTGA-------EQPENVKRASLLALGYMCESA-DPQSQALVSSSNNILIAIVQGAQSTE-TSKAVRLAALNA  204 (861)
T ss_dssp             HHHHHHHHHTST-------TSCHHHHHHHHHHHHHHHHTS-STTSSTTGGGHHHHHHHHHHHHSTTC-CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHcC-ChhhhHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHH
Confidence            467777777765       4 6677778888888888741 12111 00011224556666665421 256788888888


Q ss_pred             HHHhhcccccchhHH----hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh
Q 010019          200 MALLVHDVQSTETFR----TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN  275 (520)
Q Consensus       200 La~l~~~~~~~~~i~----~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~  275 (520)
                      +..++.--.  ..+.    ....++.+.+.+.  +.+.++...++.++..++......-...+....++.++..+...+.
T Consensus       205 l~~~~~~~~--~~~~~~~~~~~ll~~l~~~~~--~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  280 (861)
T 2bpt_A          205 LADSLIFIK--NNMEREGERNYLMQVVCEATQ--AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPND  280 (861)
T ss_dssp             HHHHGGGCH--HHHTSHHHHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHH--HHccChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence            877642110  0110    0112344444443  4578888899999988875433221122222556666667766555


Q ss_pred             HHHHHHHHHHHHhcCCCCcchhhhh--------hchHHHHHHHcCCHHHHHHHHhcCC------ChhHHHHHHHHHHHhc
Q 010019          276 DSIQSLYDAIRVLLTPDDDQVVASQ--------VYGYARRFAKIGIARALVHSLHAGL------SSPSLISASIALKAVA  341 (520)
Q Consensus       276 ~~~~~a~~aL~~Ls~~dd~~v~~~~--------a~~~a~~i~~~g~l~~Lv~lL~~~~------~~~~~~~a~~aL~~La  341 (520)
                      .+...++..+..++........+..        .....+.+. ...+|.|+..|+...      +..+...++.+|..|+
T Consensus       281 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~  359 (861)
T 2bpt_A          281 KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFA  359 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHH
Confidence            7788888888877643100000000        000111222 236788888887532      1356678888888887


Q ss_pred             cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCc--hHHHHHhcCCHHHHHHHHhccCCCHHHHH
Q 010019          342 VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS--NKSAIIENGGMDKLIVVSARFSDDASVLQ  419 (520)
Q Consensus       342 ~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~--~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~  419 (520)
                      ..-.       ...++.++..+.....+.+..+.+.++.+|+.++....  .-...+. ..++.++..+.  ..++.|+.
T Consensus       360 ~~~~-------~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~--d~~~~vr~  429 (861)
T 2bpt_A          360 QNCG-------NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMN--DQSLQVKE  429 (861)
T ss_dssp             HHHG-------GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGG--CSCHHHHH
T ss_pred             HHcc-------HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcC--CCcHHHHH
Confidence            4211       12234455554433223457899999999999995432  1112222 35677777776  56899999


Q ss_pred             HHHHHHHHHhcCCHHHH--HHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 010019          420 EVMSIITVLSLRSPENA--ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR  475 (520)
Q Consensus       420 ~a~~aL~nLa~~~~~~~--~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~  475 (520)
                      .++++|..++..-+...  ... -...++.++..|..   ++.++..|||+|.+++..
T Consensus       430 ~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~  483 (861)
T 2bpt_A          430 TTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQD---HPKVATNCSWTIINLVEQ  483 (861)
T ss_dssp             HHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhcc---ChHHHHHHHHHHHHHHHh
Confidence            99999999885211100  000 11246677777743   388999999999999753

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.39  E-value=5e-05  Score=79.23  Aligned_cols=324  Identities=14%  Similarity=0.111  Sum_probs=194.3

Q ss_pred             HHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccc---cchhH-HhcCCcHHHHHHHhc--CCCChHHHHHHHH
Q 010019          168 VATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ---STETF-RTGGGPKLLVNILID--GNEDPEILNSGFA  241 (520)
Q Consensus       168 ~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~---~~~~i-~~~ggi~~Lv~lL~~--~~~~~~v~~~a~~  241 (520)
                      ......++..++.+|+..  ...++....|.-++-++.+.+   .+..+ .+......  .++..  ..++.-.+..++.
T Consensus        72 l~~~~~~~~~~l~lL~~~--~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~--~l~~~~~~~dd~~~ll~a~~  147 (480)
T 1ho8_A           72 FKVNGKTLIPLIHLLSTS--DNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLE--QLFDVSLKGDFQTVLISGFN  147 (480)
T ss_dssp             --CSSTTHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHH--HHHHHCSCSSHHHHHHHHHH
T ss_pred             hhcCchHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccch--HHHHHHhcccchHHHHHHHH
Confidence            333456788899999875  466788888888888877654   33333 22222111  12221  1233444455555


Q ss_pred             HHHHHhcCChhhHHHHHhcCCHH--HHHHHHhcCC-hHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcC--CHHH
Q 010019          242 VVAASATGNEVVKESYMELKIDE--LILEILSRQR-NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG--IARA  316 (520)
Q Consensus       242 ~L~~~~~~~e~nr~~i~~~g~i~--~Lv~lL~~~~-~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g--~l~~  316 (520)
                      ++..++......-+.+-  ..+.  .++..|+... .+.+--++..|..|...+..|.          .+.+.+  .+++
T Consensus       148 l~~ll~~~~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~----------~f~~~~~~~~~~  215 (480)
T 1ho8_A          148 VVSLLVQNGLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRD----------VIWLHEKKFMPT  215 (480)
T ss_dssp             HHHHHTSTTTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHH----------HHHTTHHHHHHH
T ss_pred             HHHHHhccCCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHH----------HHHHcccchhHH
Confidence            55554321111111100  1112  3555665532 2344457788888888776665          444332  3677


Q ss_pred             HHHHHhcC-------------C---ChhHHHHHHHHHHHhccChhhHHHHHhcCCh--HHHHHHHhccCCCCcHHHHHHH
Q 010019          317 LVHSLHAG-------------L---SSPSLISASIALKAVAVNDEICKSVAENGGI--DALLRCIDDSGLQGNKTVARIC  378 (520)
Q Consensus       317 Lv~lL~~~-------------~---~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv--~~Ll~lL~~~~~~~~~~v~~~a  378 (520)
                      ++..++..             +   ...++-.++.++|-|+.+++....+...+..  ..|+++++....+   ++.+-+
T Consensus       216 l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KE---KvvRv~  292 (480)
T 1ho8_A          216 LFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKE---KVSRLC  292 (480)
T ss_dssp             HHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSH---HHHHHH
T ss_pred             HHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccc---hhHHHH
Confidence            76655521             1   1244678899999999999988888877643  5667777775543   899999


Q ss_pred             HHHHHHhhCCC--ch----HHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc---------------------C
Q 010019          379 CSLLSKLAGSD--SN----KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL---------------------R  431 (520)
Q Consensus       379 l~aL~~La~~~--~~----k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~---------------------~  431 (520)
                      +++|+||...+  +.    ++.++..++++.+-.+-.++-+++++.+.--...-.|-.                     -
T Consensus       293 la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~W  372 (480)
T 1ho8_A          293 ISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW  372 (480)
T ss_dssp             HHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCccc
Confidence            99999998654  21    223444455555555555555678776654333322221                     1


Q ss_pred             CH---------HHHHHHHhcC--cHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHH
Q 010019          432 SP---------ENAARAMEAG--SGDLAIQAMLKF--------PNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLI  492 (520)
Q Consensus       432 ~~---------~~~~~i~~~G--~i~~lv~~L~~~--------~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL  492 (520)
                      +|         +|+..+.+.+  .+..|+++|+..        +.++.+..-||--|..++...|+-+..+-+.|+-..+
T Consensus       373 SP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~V  452 (480)
T 1ho8_A          373 SPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADI  452 (480)
T ss_dssp             CGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHH
T ss_pred             CCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHH
Confidence            22         2333333322  367888888741        4578889999999999998899999888888999999


Q ss_pred             HHHHHhCcchHHHHHHHHHH
Q 010019          493 RQAKENHEICKDAATDALRD  512 (520)
Q Consensus       493 ~~~~~~h~~~~~~a~aALr~  512 (520)
                      +++| .|+ ..++.+.||.-
T Consensus       453 M~Lm-~h~-d~~Vr~~AL~a  470 (480)
T 1ho8_A          453 MELL-NHS-DSRVKYEALKA  470 (480)
T ss_dssp             HHHT-SCS-SHHHHHHHHHH
T ss_pred             HHHh-cCC-CHHHHHHHHHH
Confidence            8887 665 35555555543

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.38  E-value=4.6e-06  Score=86.80  Aligned_cols=283  Identities=9%  Similarity=-0.014  Sum_probs=164.9

Q ss_pred             HHHHHHHHhhcCCCCCChh--hHHHHHHHHHHHHHHhcCCCC-hhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDE--DLNEMMGLFDKLIELCGGNEG-SVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKT  199 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~--d~~~~~~al~~L~~l~~~~~~-~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~  199 (520)
                      .+..|...+.+       +  +......++..|+.+|+.  . +..-... -...++.++.+|+... .+..++..|+++
T Consensus       129 ll~~L~~~l~~-------~~~~~~~r~~al~~l~~l~~~--~~~~~~~~~-~~~ll~~l~~~l~~~~-~~~~vr~~a~~~  197 (462)
T 1ibr_B          129 LIPQLVANVTN-------PNSTEHMKESTLEAIGYICQD--IDPEQLQDK-SNEILTAIIQGMRKEE-PSNNVKLAATNA  197 (462)
T ss_dssp             HHHHHHHHHHC-------TTCCHHHHHHHHHHHHHHHHH--SCGGGTGGG-HHHHHHHHHHHHSTTC-CCHHHHHHHHHH
T ss_pred             HHHHHHHHhcc-------CCCCHHHHHHHHHHHHHHHHh--CCchhhHhH-HHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Confidence            56666666665       4  667777889999998874  2 1110111 1236777888886531 156788888888


Q ss_pred             HHHhhccccc-c-hhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHH
Q 010019          200 MALLVHDVQS-T-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDS  277 (520)
Q Consensus       200 La~l~~~~~~-~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~  277 (520)
                      +..++.--.. . ......-.++.+.+.+.  +.+.++...+++++..++......-...+..+.++.++..++...+++
T Consensus       198 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v  275 (462)
T 1ibr_B          198 LLNSLEFTKANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEV  275 (462)
T ss_dssp             HHHHTTTTHHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHH
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence            8875421100 0 00000001333333332  456888889999999887544321111122266777888887766688


Q ss_pred             HHHHHHHHHHhcCCC------------CcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC------ChhHHHHHHHHHHH
Q 010019          278 IQSLYDAIRVLLTPD------------DDQVVASQVYGYARRFAKIGIARALVHSLHAGL------SSPSLISASIALKA  339 (520)
Q Consensus       278 ~~~a~~aL~~Ls~~d------------d~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~------~~~~~~~a~~aL~~  339 (520)
                      ...++..+..++...            +.+..........+... ...+|.++..|....      +..+...++.+|..
T Consensus       276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~  354 (462)
T 1ibr_B          276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML  354 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHH
Confidence            888888888776431            00000000011111111 235677777776431      23567788889988


Q ss_pred             hccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCc---hHHHHHhcCCHHHHHHHHhccCCCHH
Q 010019          340 VAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS---NKSAIIENGGMDKLIVVSARFSDDAS  416 (520)
Q Consensus       340 La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~---~k~~Iv~~g~l~~Lv~lL~~~~~~~~  416 (520)
                      |+..-.  ..+. ...++.+...|.    +.+..+...++.+|+.++....   .+..+  ...+|.++.+|+  ..++.
T Consensus       355 l~~~~~--~~~~-~~~~~~l~~~l~----~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~--d~~~~  423 (462)
T 1ibr_B          355 LATCCE--DDIV-PHVLPFIKEHIK----NPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMK--DPSVV  423 (462)
T ss_dssp             HHHHTT--TTHH-HHHHHHHHHHTT----CSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGG--CSCHH
T ss_pred             HHHhcc--HHHH-HHHHHHHHHHhc----CCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhc--CCCHH
Confidence            873211  1111 122344444444    2457899999999999995322   11112  356888999987  66899


Q ss_pred             HHHHHHHHHHHHhc
Q 010019          417 VLQEVMSIITVLSL  430 (520)
Q Consensus       417 v~~~a~~aL~nLa~  430 (520)
                      |+..||++|.+++.
T Consensus       424 Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          424 VRDTAAWTVGRICE  437 (462)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999986

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.32  E-value=1.2e-05  Score=90.91  Aligned_cols=318  Identities=8%  Similarity=0.019  Sum_probs=181.5

Q ss_pred             cCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHh---cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q 010019          172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT---GGGPKLLVNILIDGNEDPEILNSGFAVVAASAT  248 (520)
Q Consensus       172 ~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~---~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~  248 (520)
                      ...+|.|+..+.+.. .+..+...++.++..++....  ++...   ...++.++..|.....+.++...+++++..++.
T Consensus       127 ~~ll~~l~~~l~~~~-~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~  203 (876)
T 1qgr_A          127 PELIPQLVANVTNPN-STEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE  203 (876)
T ss_dssp             TTHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence            356788888887631 156677778888888775321  11111   123556666675432367888899999988764


Q ss_pred             CChhh--HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCC
Q 010019          249 GNEVV--KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS  326 (520)
Q Consensus       249 ~~e~n--r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~  326 (520)
                      .-..+  ... .....++.+...+...+.++...++.+|..++.......         ........++.++..+.. .+
T Consensus       204 ~~~~~~~~~~-~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~---------~~~~~~~l~~~~~~~~~~-~~  272 (876)
T 1qgr_A          204 FTKANFDKES-ERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM---------ETYMGPALFAITIEAMKS-DI  272 (876)
T ss_dssp             GCHHHHTSHH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGC---------HHHHTTTHHHHHHHHHTC-SS
T ss_pred             HHHHHHHhHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHH---------HHHHHHHHHHHHHHHhcC-Cc
Confidence            32211  111 111245666666655455777788998988775321110         011222467777777654 35


Q ss_pred             hhHHHHHHHHHHHhccChh----------------------hHHHHHhcCChHHHHHHHhccCC---CCcHHHHHHHHHH
Q 010019          327 SPSLISASIALKAVAVNDE----------------------ICKSVAENGGIDALLRCIDDSGL---QGNKTVARICCSL  381 (520)
Q Consensus       327 ~~~~~~a~~aL~~La~~~e----------------------~~~~i~~~Ggv~~Ll~lL~~~~~---~~~~~v~~~al~a  381 (520)
                      ..+...++..+..++....                      ..+... ...++.++..|....+   +.+..+...+..+
T Consensus       273 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~  351 (876)
T 1qgr_A          273 DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVC  351 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHH
Confidence            6777888888877763210                      000000 1234566666653211   1223678888888


Q ss_pred             HHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHhcCcHHHHHHHHHhCCCCHH
Q 010019          382 LSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSP-ENAARAMEAGSGDLAIQAMLKFPNAQQ  460 (520)
Q Consensus       382 L~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~-~~~~~i~~~G~i~~lv~~L~~~~~~~~  460 (520)
                      |..|+..-.  ..++. ..++.+...+.  ..++.+++.++++|..++.+.. +...... ...++.++..|..  .++.
T Consensus       352 l~~l~~~~~--~~~~~-~~l~~l~~~l~--~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d--~~~~  423 (876)
T 1qgr_A          352 LMLLATCCE--DDIVP-HVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD--PSVV  423 (876)
T ss_dssp             HHHHHHHHG--GGGHH-HHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTC--SSHH
T ss_pred             HHHHHHHCc--HhhHH-HHHHHHHHHcc--CCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCC--CCHH
Confidence            888874211  11221 23455555665  5689999999999999997543 3333322 3467888888853  5789


Q ss_pred             HHHHHHHHHHHHhhhChhhH--HHHHhCCHHHHHHHHHHhCcchHHHHHHHHHHc
Q 010019          461 LQRSSCFMIRNLVARNPENR--KLLLSNGVEKLIRQAKENHEICKDAATDALRDL  513 (520)
Q Consensus       461 vqk~A~~aL~nL~~~~~e~~--~~l~~~G~~~lL~~~~~~h~~~~~~a~aALr~L  513 (520)
                      |+..|+|+|.+++...+...  ...+. .+.+.|...+...+..+..+..||..+
T Consensus       424 vr~~a~~~l~~~~~~~~~~~~~~~~l~-~~l~~l~~~l~~~~~v~~~a~~al~~l  477 (876)
T 1qgr_A          424 VRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSL  477 (876)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTSSTTTHH-HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCchhcccHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999986543310  01111 223333333333334455556666554

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.15  E-value=5.1e-05  Score=85.47  Aligned_cols=310  Identities=12%  Similarity=0.071  Sum_probs=175.6

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccc--hhHHhcCC
Q 010019          141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST--ETFRTGGG  218 (520)
Q Consensus       141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~--~~i~~~gg  218 (520)
                      .+......++..|..++.. -.+..-.... ...+|.|+..++.   .++.+...++.+++.+...-...  ..-.-...
T Consensus       381 ~~~~~r~~a~~~l~~i~~~-~~~~~~~~~l-~~il~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~  455 (861)
T 2bpt_A          381 DNWRNREAAVMAFGSIMDG-PDKVQRTYYV-HQALPSILNLMND---QSLQVKETTAWCIGRIADSVAESIDPQQHLPGV  455 (861)
T ss_dssp             SSHHHHHHHHHHHHHTSSS-SCHHHHHHHH-HHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHH
T ss_pred             CChhHHHHHHHHHHHHHcC-CCHHHHHHHH-HHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Confidence            3444555667777777653 0111111111 2356777777654   35666655555555544221000  00011234


Q ss_pred             cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC-----hhhHHHHHhcCCHHHHHHHHhcCC--hHHHHHHHHHHHHhcCC
Q 010019          219 PKLLVNILIDGNEDPEILNSGFAVVAASATGN-----EVVKESYMELKIDELILEILSRQR--NDSIQSLYDAIRVLLTP  291 (520)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~-----e~nr~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~aL~~Ls~~  291 (520)
                      ++.+++.|..   ++.++..+++++.+++...     +.....+  ..+++.|+.++.+.+  ..++..++.+|..+...
T Consensus       456 l~~l~~~l~~---~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~  530 (861)
T 2bpt_A          456 VQACLIGLQD---HPKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEY  530 (861)
T ss_dssp             HHHHHHHHTS---CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcc---ChHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH
Confidence            6677777753   3888889999998876421     1111111  245778888887543  36777788888888754


Q ss_pred             CCcchhhhhhchHHHHHHHcCCHHHHHHHHhcC--------C------ChhHHHHHHHHHHHhcc-ChhhHHHHHhcCCh
Q 010019          292 DDDQVVASQVYGYARRFAKIGIARALVHSLHAG--------L------SSPSLISASIALKAVAV-NDEICKSVAENGGI  356 (520)
Q Consensus       292 dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~--------~------~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv  356 (520)
                      .....     .    .... ..+|.+++.|...        .      ...++..++.+|.+++. ..+......+ ..+
T Consensus       531 ~~~~~-----~----~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~  599 (861)
T 2bpt_A          531 ATDTV-----A----ETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLM  599 (861)
T ss_dssp             CCGGG-----H----HHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHH
T ss_pred             cchhh-----H----HHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHH
Confidence            32211     0    1111 2567777777642        1      12456678888888873 2221111111 234


Q ss_pred             HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC--CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHH
Q 010019          357 DALLRCIDDSGLQGNKTVARICCSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE  434 (520)
Q Consensus       357 ~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~--~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~  434 (520)
                      +.++.++.....  + .+...++.+++.++..  ++....+-  ..+|.++..|+  .+++.++..++.++..++....+
T Consensus       600 ~~l~~~l~~~~~--~-~v~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~~~~  672 (861)
T 2bpt_A          600 GLFFRLLEKKDS--A-FIEDDVFYAISALAASLGKGFEKYLE--TFSPYLLKALN--QVDSPVSITAVGFIADISNSLEE  672 (861)
T ss_dssp             HHHHHHHHSTTG--G-GTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHH--CTTSHHHHHHHHHHHHHHHHTGG
T ss_pred             HHHHHHHccCCC--C-cHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHhch
Confidence            566777765311  1 5788889999988732  22222232  36788888886  56778999999999988753333


Q ss_pred             HHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhh
Q 010019          435 NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN  479 (520)
Q Consensus       435 ~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~  479 (520)
                      ...... ...++.+++.+.....+..++..+..++..++...++.
T Consensus       673 ~~~~~~-~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~  716 (861)
T 2bpt_A          673 DFRRYS-DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD  716 (861)
T ss_dssp             GGHHHH-HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGG
T ss_pred             hccchH-HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhh
Confidence            222221 23456677777643224678888999999997643333

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.95  E-value=2.7e-05  Score=91.94  Aligned_cols=271  Identities=11%  Similarity=0.076  Sum_probs=160.9

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      .+..|-+.+.+       .|.+....|+..|.+..+.  ....-..-.....++.|++.|.+   .+..++..|+.+|+.
T Consensus         7 ~l~~lL~~l~s-------~d~~~R~~A~~~L~~~l~~--~~~~~~~~~~~~il~~Ll~~L~d---~~~~vR~~A~~~L~~   74 (1230)
T 1u6g_C            7 HISNLLEKMTS-------SDKDFRFMATNDLMTELQK--DSIKLDDDSERKVVKMILKLLED---KNGEVQNLAVKCLGP   74 (1230)
T ss_dssp             HHHHHHHHTTC-------SSHHHHHHHHHHHHHHTSS--SCCSCCTTHHHHHHHHHHHHTTC---SSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCC-------CCHhHHHHHHHHHHHHHcc--cccCCChhHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHH
Confidence            34555555655       7888888999999887764  21100001112467778888864   377788778888887


Q ss_pred             hhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh------HHHHHhcCCHHHHHHHHhc-CCh
Q 010019          203 LVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV------KESYMELKIDELILEILSR-QRN  275 (520)
Q Consensus       203 l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n------r~~i~~~g~i~~Lv~lL~~-~~~  275 (520)
                      +...-.  +..+ ...++.+++.|.  +++..++..++.+|+.++......      ..... ...+|.|+..+.. .+.
T Consensus        75 l~~~~~--~~~~-~~i~~~Ll~~l~--d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~-~~llp~L~~~l~~~~~~  148 (1230)
T 1u6g_C           75 LVSKVK--EYQV-ETIVDTLCTNML--SDKEQLRDISSIGLKTVIGELPPASSGSALAANVC-KKITGRLTSAIAKQEDV  148 (1230)
T ss_dssp             HHTTSC--HHHH-HHHHHHHHHHTT--CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHH-HHHHHHHHHHHSCCSCH
T ss_pred             HHHhCC--HHHH-HHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHH-HHHHHHHHHHHcCCCch
Confidence            764321  1111 123455555554  345667777888887776432211      11122 2478889999974 445


Q ss_pred             HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCC
Q 010019          276 DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGG  355 (520)
Q Consensus       276 ~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Gg  355 (520)
                      .++..|+.+|..++..-....     ..+.     ...++.|+..|.. +++.+...++.+|..++.....  .+. ...
T Consensus       149 ~~~~~al~~l~~~~~~~~~~l-----~~~~-----~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~~~--~~~-~~~  214 (1230)
T 1u6g_C          149 SVQLEALDIMADMLSRQGGLL-----VNFH-----PSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGN--IVF-VDL  214 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSC-----TTTH-----HHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC------C-TTH
T ss_pred             HHHHHHHHHHHHHHHHhHhHH-----HHHH-----HHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhcCH--HHH-HHH
Confidence            777778888988874211100     0011     1245666666664 4567888999999999843221  121 234


Q ss_pred             hHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHH--hcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 010019          356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAII--ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRS  432 (520)
Q Consensus       356 v~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv--~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~  432 (520)
                      ++.++..|....+.   .+...++.+|..++.....  .+.  -...++.++..+.  .+++.+++.++.++..++...
T Consensus       215 l~~l~~~L~~~~~~---~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~--d~~~~vR~~a~~~l~~l~~~~  286 (1230)
T 1u6g_C          215 IEHLLSELSKNDSM---STTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCN--VDDDELREYCIQAFESFVRRC  286 (1230)
T ss_dssp             HHHHHHHHHHTCSS---CSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHS--SCCTTTHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHhccCCch---hHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHC
Confidence            67888888764221   3556677888777632111  111  1246788888887  567889999999988887543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.89  E-value=0.00039  Score=69.27  Aligned_cols=177  Identities=16%  Similarity=0.194  Sum_probs=134.8

Q ss_pred             HHHHHhcCCChhHHHHHHHHHHH-hccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHH
Q 010019          317 LVHSLHAGLSSPSLISASIALKA-VAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAI  395 (520)
Q Consensus       317 Lv~lL~~~~~~~~~~~a~~aL~~-La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~I  395 (520)
                      +++-|.+. +...++.+..-|.. +..+.++...++..+|+..|+.+....    +...+..++.+|.+|....+....|
T Consensus       123 iiekL~~~-~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~----~gN~q~Y~L~AL~~LM~~v~Gm~gv  197 (339)
T 3dad_A          123 ILEKLYSS-SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA----DHNYQSYILRALGQLMLFVDGMLGV  197 (339)
T ss_dssp             HHHHHHHC-CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS----CHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHhcC-CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc----ChHHHHHHHHHHHHHHhccccccch
Confidence            33445543 34567788888887 667789999999999999999999764    2489999999999999988888777


Q ss_pred             Hh-cCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCc----------HHHHHHHHH-hCCCCHHHHH
Q 010019          396 IE-NGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGS----------GDLAIQAML-KFPNAQQLQR  463 (520)
Q Consensus       396 v~-~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~----------i~~lv~~L~-~~~~~~~vqk  463 (520)
                      ++ ...|..|..++.  +....|.+.|+..|..++..++.+...+.++=-          ...++..|+ ....+.++|.
T Consensus       198 vs~~~fI~~lyslv~--s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~  275 (339)
T 3dad_A          198 VAHSDTIQWLYTLCA--SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV  275 (339)
T ss_dssp             HHCHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred             hCCHHHHHHHHHHHc--CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence            74 346788888888  678999999999999999877767665543211          567888885 2347899999


Q ss_pred             HHHHHHHHHhhhCh------hhHHHHHhCCHHHHHHHHHHhCc
Q 010019          464 SSCFMIRNLVARNP------ENRKLLLSNGVEKLIRQAKENHE  500 (520)
Q Consensus       464 ~A~~aL~nL~~~~~------e~~~~l~~~G~~~lL~~~~~~h~  500 (520)
                      +|-.+|.-+-..-+      +....+-+.|+...+...+..+.
T Consensus       276 ~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~  318 (339)
T 3dad_A          276 YTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAG  318 (339)
T ss_dssp             HHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccC
Confidence            98877766654433      34455667899999998887774

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.83  E-value=0.038  Score=60.38  Aligned_cols=295  Identities=12%  Similarity=0.110  Sum_probs=180.5

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      ++..++.-+.+       .++-...-|++.|..+..    ++    +. ...+|.+.++|.+.+ .++-+...|+-++..
T Consensus       112 ~iN~l~kDl~~-------~n~~ir~lALr~L~~i~~----~e----~~-~~l~~~v~~~l~~~d-~~~~VRK~A~~al~k  174 (621)
T 2vgl_A          112 INNAIKNDLAS-------RNPTFMGLALHCIANVGS----RE----MA-EAFAGEIPKILVAGD-TMDSVKQSAALCLLR  174 (621)
T ss_dssp             HHHHHHHHHHS-------CCHHHHHHHHHHHHHHCC----HH----HH-HHHTTHHHHHHHCSS-SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCC-------CCHHHHHHHHHHhhccCC----HH----HH-HHHHHHHHHHHhCCC-CCHHHHHHHHHHHHH
Confidence            45566666655       455545555555555432    22    11 135677778883221 377787777777777


Q ss_pred             hhcccccchhHHh-cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHh----cC----
Q 010019          203 LVHDVQSTETFRT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS----RQ----  273 (520)
Q Consensus       203 l~~~~~~~~~i~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~----~~----  273 (520)
                      +..-.   ++.+. .+.++.+.++|.  ..++.++..|+.++..+|..++   +.+.  ..++.+++.|.    .+    
T Consensus       175 l~~~~---p~~~~~~~~~~~l~~lL~--d~d~~V~~~a~~~l~~i~~~~~---~~~~--~~~~~~~~~L~~ll~~~~~~~  244 (621)
T 2vgl_A          175 LYRTS---PDLVPMGDWTSRVVHLLN--DQHLGVVTAATSLITTLAQKNP---EEFK--TSVSLAVSRLSRIVTSASTDL  244 (621)
T ss_dssp             HHHHC---GGGCCCCSCHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCH---HHHT--THHHHHHHHHHHHHHCCSSSC
T ss_pred             HHHhC---hhhcCchhHHHHHHHHhC--CCCccHHHHHHHHHHHHHHhCh---HHHH--HHHHHHHHHHHHHHhCCCCCc
Confidence            66433   34444 367888999885  4578999999999999886443   2221  34555555554    21    


Q ss_pred             ---------ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC--------C--hhHHHHHH
Q 010019          274 ---------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--------S--SPSLISAS  334 (520)
Q Consensus       274 ---------~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~--------~--~~~~~~a~  334 (520)
                               ++=.+......|..++..+++..        .+.+.+  .++.++..+...+        +  ..++-+++
T Consensus       245 ~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~--------~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~  314 (621)
T 2vgl_A          245 QDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAV--------RGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAI  314 (621)
T ss_dssp             STTEETTEESHHHHHHHHHHGGGSSSCSSHHH--------HHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHH
T ss_pred             cchhhcCCCCchHHHHHHHHHHHhCCCCCHHH--------HHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHH
Confidence                     12233446667777765443221        112222  3444443332211        2  26777888


Q ss_pred             HHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCC
Q 010019          335 IALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD  414 (520)
Q Consensus       335 ~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~  414 (520)
                      .++..+..+++..+.     ++..|..+|..    .++.++-.++..|..++........+ . .-.+.++..|+ +.++
T Consensus       315 ~~i~~l~~~~~~~~~-----~~~~L~~~L~~----~~~niry~aL~~l~~l~~~~~~~~~~-~-~~~~~i~~~L~-~d~d  382 (621)
T 2vgl_A          315 SLIIHHDSEPNLLVR-----ACNQLGQFLQH----RETNLRYLALESMCTLASSEFSHEAV-K-THIETVINALK-TERD  382 (621)
T ss_dssp             HHHHHHCCCHHHHHH-----HHHHHHHHSSC----SCHHHHHHHHHHHHHHTTCTTTHHHH-H-TTHHHHHHHHT-TCCC
T ss_pred             HHHHhcCCcHHHHHH-----HHHHHHHHhcC----CCcchHHHHHHHHHHHHhccCcHHHH-H-HHHHHHHHHhc-cCCC
Confidence            888888755544333     34567777753    23589999999999998653222333 2 35677888885 2457


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 010019          415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR  475 (520)
Q Consensus       415 ~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~  475 (520)
                      +.|+..++-+|..|+  +++|...++.     .+...+..  .+....+.+..+|..++.+
T Consensus       383 ~~Ir~~aL~lL~~l~--~~~Nv~~Iv~-----eL~~yl~~--~d~~~~~~~v~~I~~la~k  434 (621)
T 2vgl_A          383 VSVRQRAVDLLYAMC--DRSNAQQIVA-----EMLSYLET--ADYSIREEIVLKVAILAEK  434 (621)
T ss_dssp             HHHHHHHHHHHHHHC--CHHHHHHHHH-----HHHHHHHH--CCHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHc--ChhhHHHHHH-----HHHHHHHh--cCHHHHHHHHHHHHHHHHh
Confidence            999999999999998  5677766653     45556654  4678888888888888754

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.59  E-value=0.012  Score=64.32  Aligned_cols=268  Identities=10%  Similarity=0.051  Sum_probs=168.1

Q ss_pred             HHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 010019          176 ELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKE  255 (520)
Q Consensus       176 p~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~  255 (520)
                      ..+..=|.+   .++-+...||.+|+++..     +++.+ ..++.+.++|.+.+.++-+...|+-++..+...+++   
T Consensus       114 N~l~kDl~~---~n~~ir~lALr~L~~i~~-----~e~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---  181 (621)
T 2vgl_A          114 NAIKNDLAS---RNPTFMGLALHCIANVGS-----REMAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---  181 (621)
T ss_dssp             HHHHHHHHS---CCHHHHHHHHHHHHHHCC-----HHHHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---
T ss_pred             HHHHHhcCC---CCHHHHHHHHHHhhccCC-----HHHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---
Confidence            344444444   477788899999999853     33332 346778888854456889999999999888765443   


Q ss_pred             HHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHh----c--CC----
Q 010019          256 SYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH----A--GL----  325 (520)
Q Consensus       256 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~----~--~~----  325 (520)
                      .+...+.++.|.++|...+..++.+|+.+|..++..+..            .+  ...+|.++..|.    .  .+    
T Consensus       182 ~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~------------~~--~~~~~~~~~~L~~ll~~~~~~~~~~  247 (621)
T 2vgl_A          182 LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE------------EF--KTSVSLAVSRLSRIVTSASTDLQDY  247 (621)
T ss_dssp             GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH------------HH--TTHHHHHHHHHHHHHHCCSSSCSTT
T ss_pred             hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH------------HH--HHHHHHHHHHHHHHHhCCCCCccch
Confidence            222347899999999776668888899999988754311            01  123444444333    2  11    


Q ss_pred             ------ChhHHHHHHHHHHHhccC--hhhHHHHHhcCChHHHHHHHhccCC-----CCcH--HHHHHHHHHHHHhhCCCc
Q 010019          326 ------SSPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGL-----QGNK--TVARICCSLLSKLAGSDS  390 (520)
Q Consensus       326 ------~~~~~~~a~~aL~~La~~--~e~~~~i~~~Ggv~~Ll~lL~~~~~-----~~~~--~v~~~al~aL~~La~~~~  390 (520)
                            ++-.+......|..++..  ++....+.+  .++.++..+.+.+.     +.|.  .|+-+|..++..+...++
T Consensus       248 ~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~  325 (621)
T 2vgl_A          248 TYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPN  325 (621)
T ss_dssp             EETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred             hhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHH
Confidence                  344566677777777742  344444433  12333332221110     0122  788889999888864332


Q ss_pred             hHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010019          391 NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIR  470 (520)
Q Consensus       391 ~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~  470 (520)
                      ...     .++..|..+|.  +.++.++..++.+|..++...|+.  .++. .....++..|+.+ ++..+++.|.-.|.
T Consensus       326 ~~~-----~~~~~L~~~L~--~~~~niry~aL~~l~~l~~~~~~~--~~~~-~~~~~i~~~L~~d-~d~~Ir~~aL~lL~  394 (621)
T 2vgl_A          326 LLV-----RACNQLGQFLQ--HRETNLRYLALESMCTLASSEFSH--EAVK-THIETVINALKTE-RDVSVRQRAVDLLY  394 (621)
T ss_dssp             HHH-----HHHHHHHHHSS--CSCHHHHHHHHHHHHHHTTCTTTH--HHHH-TTHHHHHHHHTTC-CCHHHHHHHHHHHH
T ss_pred             HHH-----HHHHHHHHHhc--CCCcchHHHHHHHHHHHHhccCcH--HHHH-HHHHHHHHHhccC-CCHhHHHHHHHHHH
Confidence            222     35667888886  668999999999999999876531  1222 3456677777523 57889999999999


Q ss_pred             HHhhhChhhHHHHH
Q 010019          471 NLVARNPENRKLLL  484 (520)
Q Consensus       471 nL~~~~~e~~~~l~  484 (520)
                      .++  ++.+...++
T Consensus       395 ~l~--~~~Nv~~Iv  406 (621)
T 2vgl_A          395 AMC--DRSNAQQIV  406 (621)
T ss_dssp             HHC--CHHHHHHHH
T ss_pred             HHc--ChhhHHHHH
Confidence            985  455555544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.58  E-value=0.068  Score=60.49  Aligned_cols=207  Identities=10%  Similarity=0.066  Sum_probs=131.2

Q ss_pred             cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcC-ChHHHHHHHHHHHHhcCCCCcchh
Q 010019          219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQVV  297 (520)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~dd~~v~  297 (520)
                      ++.|..+|...  +..+...+..+++.+-.+.- |.+      ++..|+..+... .+.+.+.++..|.-+...+.    
T Consensus       474 ~e~L~~~L~dd--~~~~~~~AalALGli~vGTg-n~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~----  540 (963)
T 4ady_A          474 YEALKEVLYND--SATSGEAAALGMGLCMLGTG-KPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQ----  540 (963)
T ss_dssp             HHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCC-CHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG----
T ss_pred             HHHHHHHHhcC--CHHHHHHHHHHHhhhhcccC-CHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh----
Confidence            46677777632  33344456666665432221 222      345666665443 44778888888887776553    


Q ss_pred             hhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHH
Q 010019          298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARI  377 (520)
Q Consensus       298 ~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~  377 (520)
                                    ..++.++++|....++.+...++.+++--.....+..      .|+.|+..+....   +..+...
T Consensus       541 --------------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------aIq~LL~~~~~d~---~d~VRra  597 (963)
T 4ady_A          541 --------------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------AVKRLLHVAVSDS---NDDVRRA  597 (963)
T ss_dssp             --------------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHHCS---CHHHHHH
T ss_pred             --------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHhccCC---cHHHHHH
Confidence                          3578889999876667666666666642222222221      2345666665433   2478999


Q ss_pred             HHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCC
Q 010019          378 CCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPN  457 (520)
Q Consensus       378 al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~  457 (520)
                      |.-+|+.++..+.        ..++.+++.|.. +.++.|+..++.+|..++.+++..       .+++.|..++  |..
T Consensus       598 AViaLGlI~~g~~--------e~v~rlv~~L~~-~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~--~D~  659 (963)
T 4ady_A          598 AVIALGFVLLRDY--------TTVPRIVQLLSK-SHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLT--KDP  659 (963)
T ss_dssp             HHHHHHHHTSSSC--------SSHHHHTTTGGG-CSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHH--TCS
T ss_pred             HHHHHHhhccCCH--------HHHHHHHHHHHh-cCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHc--cCC
Confidence            9999998864432        346677776654 458999999999999999876531       1345555554  446


Q ss_pred             CHHHHHHHHHHHHHHhhhChhh
Q 010019          458 AQQLQRSSCFMIRNLVARNPEN  479 (520)
Q Consensus       458 ~~~vqk~A~~aL~nL~~~~~e~  479 (520)
                      +..|.+.|..+|..+-.++.+.
T Consensus       660 d~~Vrq~Ai~ALG~Ig~gtnna  681 (963)
T 4ady_A          660 VDFVRQAAMIALSMILIQQTEK  681 (963)
T ss_dssp             SHHHHHHHHHHHHHHSTTCCTT
T ss_pred             CHHHHHHHHHHHHHHhcCCccc
Confidence            8899999999999997664443

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.53  E-value=0.081  Score=55.21  Aligned_cols=239  Identities=11%  Similarity=0.066  Sum_probs=150.1

Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcC--CHHHHHHHHhcC-------------Ch----HHHHHHH
Q 010019          222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELK--IDELILEILSRQ-------------RN----DSIQSLY  282 (520)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g--~i~~Lv~lL~~~-------------~~----~~~~~a~  282 (520)
                      ++..|... ++...+..++.++..+.. .+..|..|.+.+  .+++++.+++..             .+    .++=.++
T Consensus       172 ~~~~L~~~-~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l  249 (480)
T 1ho8_A          172 LINILQNI-EQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  249 (480)
T ss_dssp             HHHHHHCT-TCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHhccc-cCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence            44455432 233445567777777765 577999998764  367777665532             11    2333477


Q ss_pred             HHHHHhcCCCCcchhhhhhchHHHHHHHcCCH--HHHHHHHhcCCChhHHHHHHHHHHHhccCh-----hhHH-HHHhcC
Q 010019          283 DAIRVLLTPDDDQVVASQVYGYARRFAKIGIA--RALVHSLHAGLSSPSLISASIALKAVAVND-----EICK-SVAENG  354 (520)
Q Consensus       283 ~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l--~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~-----e~~~-~i~~~G  354 (520)
                      -.++-|++.++.          ++.+...+..  +.|+++++......+.+-++.+|.||...+     .... .++..+
T Consensus       250 l~iWlLSF~~~~----------~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~  319 (480)
T 1ho8_A          250 LLIWLLTFNPVF----------ANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGN  319 (480)
T ss_dssp             HHHHHHTTSHHH----------HHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCHHH----------HHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHcc
Confidence            788888886532          2355544433  677888888665667788889999998543     2223 233334


Q ss_pred             ChHHHHHHHhccCCCCcHHHHHHHHHHHHHh-------hCCCchHHHHH------------------------hc--CCH
Q 010019          355 GIDALLRCIDDSGLQGNKTVARICCSLLSKL-------AGSDSNKSAII------------------------EN--GGM  401 (520)
Q Consensus       355 gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~L-------a~~~~~k~~Iv------------------------~~--g~l  401 (520)
                      + ..+++.|.... -.|.++.+..-.+...|       ++.|+-+..+-                        +.  ..+
T Consensus       320 ~-l~~l~~L~~rk-~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~ll  397 (480)
T 1ho8_A          320 A-LPTVQSLSERK-YSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIF  397 (480)
T ss_dssp             H-HHHHHHHHSSC-CSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHH
T ss_pred             c-hHHHHHHhhCC-CCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHH
Confidence            4 55666665421 12335554433222221       21122222221                        11  236


Q ss_pred             HHHHHHHhcc--------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019          402 DKLIVVSARF--------SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV  473 (520)
Q Consensus       402 ~~Lv~lL~~~--------~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~  473 (520)
                      ..|+++|...        +.++.+..-||-=|..++...|+-+..+-+.|+=+.++++|. | .+++|+++|-.++.-+.
T Consensus       398 k~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~-h-~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          398 RQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLN-H-SDSRVKYEALKATQAII  475 (480)
T ss_dssp             HHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS-C-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhc-C-CCHHHHHHHHHHHHHHH
Confidence            8899999732        347888999999999999989988888888899888888884 5 58999999999988775


Q ss_pred             hhC
Q 010019          474 ARN  476 (520)
Q Consensus       474 ~~~  476 (520)
                      .++
T Consensus       476 ~~~  478 (480)
T 1ho8_A          476 GYT  478 (480)
T ss_dssp             HHS
T ss_pred             Hhc
Confidence            543

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.33  E-value=0.003  Score=59.62  Aligned_cols=183  Identities=7%  Similarity=0.091  Sum_probs=130.3

Q ss_pred             cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhH-HhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 010019          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETF-RTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV  252 (520)
Q Consensus       174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i-~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~  252 (520)
                      .+..|..+|..   .|+.+...++.+|--++.+-+..... .-....+.++++++  +.+..+...|++++..+..+.+-
T Consensus        34 ~l~~L~~LL~d---kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk--~~dEkval~A~r~L~~LLe~vpL  108 (265)
T 3b2a_A           34 ALFLILELAGE---DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS--QENEKVTIKALRALGYLVKDVPM  108 (265)
T ss_dssp             HHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCC--STTHHHHHHHHHHHHHHHTTCCB
T ss_pred             HHHHHHHHHhc---cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHcCCCC
Confidence            56678888865   47888888888887777553222222 22456788888885  56789999999999998877766


Q ss_pred             hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHH
Q 010019          253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS  332 (520)
Q Consensus       253 nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~  332 (520)
                      ....+.+  ++..|.+++.++.+-....|+..|..|..-...+                +.+..|..++ .+.|+.++..
T Consensus       109 ~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~----------------~V~~~l~sLl-~Skd~~vK~a  169 (265)
T 3b2a_A          109 GSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK----------------LVRTYINELV-VSPDLYTKVA  169 (265)
T ss_dssp             CHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH----------------HHHHHHHHHH-TCSSHHHHHH
T ss_pred             CHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH----------------HHHHHHHHHH-hCCChhHHHH
Confidence            6777765  5678888888766666677999999884333211                2467888888 4468899999


Q ss_pred             HHHHHHHhccC---hhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCC
Q 010019          333 ASIALKAVAVN---DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD  389 (520)
Q Consensus       333 a~~aL~~La~~---~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~  389 (520)
                      +..+|.+++..   .++...|+     .-+-.+|+.    .|+.+++-|+.+|-.+.+.+
T Consensus       170 gl~~L~eia~~S~D~~i~~~I~-----~eI~elL~~----eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          170 GFCLFLNMLNSSADSGHLTLIL-----DEIPSLLQN----DNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             HHHHHHHHGGGCSSCCCGGGTT-----TTHHHHHTC----SCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhhcccCCHHHHHHHH-----HHHHHHHcC----CCHHHHHHHHHHHHHHHcCc
Confidence            99999999853   23333333     234456664    24689999999999998764

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.22  E-value=0.05  Score=61.55  Aligned_cols=279  Identities=13%  Similarity=0.127  Sum_probs=161.9

Q ss_pred             cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCC---C---ChHHHHHHHHHHHHHh
Q 010019          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN---E---DPEILNSGFAVVAASA  247 (520)
Q Consensus       174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~---~---~~~v~~~a~~~L~~~~  247 (520)
                      ++..|-..|.....++..+...|+-+|..+..+..  .+     .+..|.+.|.+.+   .   .+.++..|+..|+.+.
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~  465 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA  465 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence            34444444432111355666667777665543321  11     3566777776432   1   1456666777777764


Q ss_pred             cCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCCh
Q 010019          248 TGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS  327 (520)
Q Consensus       248 ~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~  327 (520)
                      ....  ++     .+++.|+.+|...+......|+.+|.-+-.+..+                ..++..|+..+.+..+.
T Consensus       466 ~GS~--~e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn----------------~~ai~~LL~~~~e~~~e  522 (963)
T 4ady_A          466 MGSA--NI-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK----------------PEAIHDMFTYSQETQHG  522 (963)
T ss_dssp             TTCC--CH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC----------------HHHHHHHHHHHHHCSCH
T ss_pred             cCCC--CH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC----------------HHHHHHHHHHHhccCcH
Confidence            4321  22     2456788888765433333566666644222211                11356677766654456


Q ss_pred             hHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHh-hCCCchHHHHHhcCCHHHHH
Q 010019          328 PSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL-AGSDSNKSAIIENGGMDKLI  405 (520)
Q Consensus       328 ~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~L-a~~~~~k~~Iv~~g~l~~Lv  405 (520)
                      .+.+.++.+|+-+. .+++         .++.+++.|... +  ++-+...++-+++-- ++... ..      +++.|+
T Consensus       523 ~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~-~--dp~vRygaa~alglAyaGTGn-~~------aIq~LL  583 (963)
T 4ady_A          523 NITRGLAVGLALINYGRQE---------LADDLITKMLAS-D--ESLLRYGGAFTIALAYAGTGN-NS------AVKRLL  583 (963)
T ss_dssp             HHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHC-S--CHHHHHHHHHHHHHHTTTSCC-HH------HHHHHH
T ss_pred             HHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhC-C--CHHHHHHHHHHHHHHhcCCCC-HH------HHHHHH
Confidence            78888899998876 3333         356777788753 2  245555555555432 33332 22      355666


Q ss_pred             HHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHh
Q 010019          406 VVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLS  485 (520)
Q Consensus       406 ~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~  485 (520)
                      +.+..+ .+..|+..|+.+|..++.++++.         ++.++..|.. ..++.|.+.|++||..+.++++..      
T Consensus       584 ~~~~~d-~~d~VRraAViaLGlI~~g~~e~---------v~rlv~~L~~-~~d~~VR~gAalALGli~aGn~~~------  646 (963)
T 4ady_A          584 HVAVSD-SNDDVRRAAVIALGFVLLRDYTT---------VPRIVQLLSK-SHNAHVRCGTAFALGIACAGKGLQ------  646 (963)
T ss_dssp             HHHHHC-SCHHHHHHHHHHHHHHTSSSCSS---------HHHHTTTGGG-CSCHHHHHHHHHHHHHHTSSSCCH------
T ss_pred             HHhccC-CcHHHHHHHHHHHHhhccCCHHH---------HHHHHHHHHh-cCCHHHHHHHHHHHHHhccCCCcH------
Confidence            666543 46789999999999998887643         4455555544 468999999999999997766532      


Q ss_pred             CCHHHHHHHHHHh-CcchHHHHHHHHHHcCCCCCC
Q 010019          486 NGVEKLIRQAKEN-HEICKDAATDALRDLGLDDYN  519 (520)
Q Consensus       486 ~G~~~lL~~~~~~-h~~~~~~a~aALr~Lg~~~~n  519 (520)
                       .+.+.|..+... ...+...|.-||.-+|.-.+|
T Consensus       647 -~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn  680 (963)
T 4ady_A          647 -SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE  680 (963)
T ss_dssp             -HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred             -HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence             233455444311 123445567777777776665

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.17  E-value=5e-05  Score=65.57  Aligned_cols=120  Identities=8%  Similarity=0.017  Sum_probs=80.2

Q ss_pred             cCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCc
Q 010019          311 IGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS  390 (520)
Q Consensus       311 ~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~  390 (520)
                      ...++.|+.+|++ +++.+...++++|..+..           ..++.|+.+|.+    +++.+...++.+|+++..   
T Consensus        11 ~~~~~~l~~~L~~-~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d----~~~~vR~~A~~aL~~~~~---   71 (131)
T 1te4_A           11 SSGLVPRGSHMAD-ENKWVRRDVSTALSRMGD-----------EAFEPLLESLSN----EDWRIRGAAAWIIGNFQD---   71 (131)
T ss_dssp             ----------CCS-SCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGC----SCHHHHHHHHHHHGGGCS---
T ss_pred             cccHHHHHHHhcC-CCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcC----CCHHHHHHHHHHHHhcCC---
Confidence            3567888888875 455566667776665531           126788888874    246899999999988753   


Q ss_pred             hHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010019          391 NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIR  470 (520)
Q Consensus       391 ~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~  470 (520)
                             ..+++.|+.+|+  .+++.|+..++++|..+..  +         ..++.|+.+++.  .++.|+..|+++|.
T Consensus        72 -------~~a~~~L~~~L~--d~~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d--~~~~vr~~A~~aL~  129 (131)
T 1te4_A           72 -------ERAVEPLIKLLE--DDSGFVRSGAARSLEQIGG--E---------RVRAAMEKLAET--GTGFARKVAVNYLE  129 (131)
T ss_dssp             -------HHHHHHHHHHHH--HCCTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTS--CCTHHHHHHHHHGG
T ss_pred             -------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence                   135888999997  5688999999999998862  2         356778888743  57889999998876


Q ss_pred             H
Q 010019          471 N  471 (520)
Q Consensus       471 n  471 (520)
                      .
T Consensus       130 ~  130 (131)
T 1te4_A          130 T  130 (131)
T ss_dssp             G
T ss_pred             h
Confidence            4

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.11  E-value=0.033  Score=55.42  Aligned_cols=185  Identities=14%  Similarity=0.097  Sum_probs=122.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHH-hcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC
Q 010019          265 LILEILSRQRNDSIQSLYDAIRV-LLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN  343 (520)
Q Consensus       265 ~Lv~lL~~~~~~~~~~a~~aL~~-Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~  343 (520)
                      .+++-|.+.+....+.+..-|.. +..|.          +.+.++++.+|+..|+.....+ +.+.+..++.||.+|...
T Consensus       122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~----------~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~  190 (339)
T 3dad_A          122 AILEKLYSSSGPELRRSLFSLKQIFQEDK----------DLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF  190 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTCT----------THHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcch----------HHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc
Confidence            34455555444555555555655 33333          3456899999999999999765 577899999999999877


Q ss_pred             hhhHHHHHh-cCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCc-hHHHHHhc-------CC---HHHHHHHHhc-
Q 010019          344 DEICKSVAE-NGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS-NKSAIIEN-------GG---MDKLIVVSAR-  410 (520)
Q Consensus       344 ~e~~~~i~~-~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~-~k~~Iv~~-------g~---l~~Lv~lL~~-  410 (520)
                      ..-...++. ...|..+..++..    .+..|++.|+.+|..+....+ +...+.++       .|   .+.|+..|++ 
T Consensus       191 v~Gm~gvvs~~~fI~~lyslv~s----~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~  266 (339)
T 3dad_A          191 VDGMLGVVAHSDTIQWLYTLCAS----LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEK  266 (339)
T ss_dssp             HHHHHHHHHCHHHHHHHHHGGGC----SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTT
T ss_pred             cccccchhCCHHHHHHHHHHHcC----ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhcc
Confidence            555555553 3345566666663    346899999999999986543 44433321       12   6688888853 


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCH--HHH----HHHHhcCcHHHHHHHHHhCCCCHHHHHH
Q 010019          411 FSDDASVLQEVMSIITVLSLRSP--ENA----ARAMEAGSGDLAIQAMLKFPNAQQLQRS  464 (520)
Q Consensus       411 ~~~~~~v~~~a~~aL~nLa~~~~--~~~----~~i~~~G~i~~lv~~L~~~~~~~~vqk~  464 (520)
                      .+.+..++.+++..|-.+-..-|  +..    ..+-+.|.-..+.+.|+.+..+++.+++
T Consensus       267 ~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          267 NGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            24689999999988776654333  322    3334456556677778776667776655

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.08  E-value=6.5e-05  Score=64.84  Aligned_cols=119  Identities=8%  Similarity=0.019  Sum_probs=79.2

Q ss_pred             CCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010019          261 KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV  340 (520)
Q Consensus       261 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~L  340 (520)
                      ..++.|+.+|++.+..++..|+++|..+-.                     ..++.|+.+|++ +++.+...++++|+++
T Consensus        12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~---------------------~~~~~L~~~L~d-~~~~vR~~A~~aL~~~   69 (131)
T 1te4_A           12 SGLVPRGSHMADENKWVRRDVSTALSRMGD---------------------EAFEPLLESLSN-EDWRIRGAAAWIIGNF   69 (131)
T ss_dssp             ---------CCSSCCCSSSSCCSSTTSCSS---------------------TTHHHHHHGGGC-SCHHHHHHHHHHHGGG
T ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc---------------------hHHHHHHHHHcC-CCHHHHHHHHHHHHhc
Confidence            455667777766544555555555543321                     136889999885 5788889999999988


Q ss_pred             ccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHH
Q 010019          341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQE  420 (520)
Q Consensus       341 a~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~  420 (520)
                      ..          ...++.|+.+|.+.    ++.|...++.+|+.+..          ..+++.|+.+|+  .+++.|+..
T Consensus        70 ~~----------~~a~~~L~~~L~d~----~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~--d~~~~vr~~  123 (131)
T 1te4_A           70 QD----------ERAVEPLIKLLEDD----SGFVRSGAARSLEQIGG----------ERVRAAMEKLAE--TGTGFARKV  123 (131)
T ss_dssp             CS----------HHHHHHHHHHHHHC----CTHHHHHHHHHHHHHCS----------HHHHHHHHHHTT--SCCTHHHHH
T ss_pred             CC----------HHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh--CCCHHHHHH
Confidence            52          12378889999752    23899999999998752          245788999997  678899999


Q ss_pred             HHHHHHH
Q 010019          421 VMSIITV  427 (520)
Q Consensus       421 a~~aL~n  427 (520)
                      ++.+|..
T Consensus       124 A~~aL~~  130 (131)
T 1te4_A          124 AVNYLET  130 (131)
T ss_dssp             HHHHGGG
T ss_pred             HHHHHHh
Confidence            9998864

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=96.94  E-value=0.02  Score=54.18  Aligned_cols=181  Identities=13%  Similarity=0.117  Sum_probs=117.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhcCC-CCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-
Q 010019          265 LILEILSRQRNDSIQSLYDAIRVLLTP-DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-  342 (520)
Q Consensus       265 ~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-  342 (520)
                      .+.+.+.+.+-..+..|...|..+... .....     ..    +.  ..++.|..+|...++..+...++.+|..|+. 
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~-----~~----~~--~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~   87 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN-----GE----YG--ALVSALKKVITKDSNVVLVAMAGKCLALLAKG   87 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC-----CC----CH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCC-----CC----HH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            466677665447777777777777653 11100     00    11  2366778888523467788899999999983 


Q ss_pred             -ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHH
Q 010019          343 -NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEV  421 (520)
Q Consensus       343 -~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a  421 (520)
                       .+++...+.  -.++.|+..+.+    .+..+...++.+|.+++......      ..++.+...|+  ..++.+++.+
T Consensus        88 l~~~~~~~~~--~ilp~ll~~l~d----~~~~vr~~a~~aL~~~~~~~~~~------~ll~~l~~~l~--~~~~~vr~~~  153 (242)
T 2qk2_A           88 LAKRFSNYAS--ACVPSLLEKFKE----KKPNVVTALREAIDAIYASTSLE------AQQESIVESLS--NKNPSVKSET  153 (242)
T ss_dssp             HGGGGHHHHH--HHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHTT--CSCHHHHHHH
T ss_pred             HhhhHHHHHH--HHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHc--CCChHHHHHH
Confidence             222222211  135666666664    24589999999999998654321      24567777787  5689999999


Q ss_pred             HHHHHHHhcCC-HHH--HHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019          422 MSIITVLSLRS-PEN--AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (520)
Q Consensus       422 ~~aL~nLa~~~-~~~--~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~  474 (520)
                      +..|..+.... |+.  ...+ . ..++.++..|..  .++.|+..|..+|..++.
T Consensus       154 l~~l~~~l~~~~~~~~~~~~l-~-~l~p~l~~~l~D--~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          154 ALFIARALTRTQPTALNKKLL-K-LLTTSLVKTLNE--PDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             HHHHHHHHTTCCGGGCCHHHH-H-HHHHHHHHHHTS--SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCccHHHH-H-HHHHHHHHHhcC--CChHHHHHHHHHHHHHHH
Confidence            99999965443 431  2222 1 367888888843  678999999999998864

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=96.90  E-value=0.061  Score=63.25  Aligned_cols=274  Identities=9%  Similarity=0.083  Sum_probs=151.2

Q ss_pred             HHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHH--hcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 010019          175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR--TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV  252 (520)
Q Consensus       175 ip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~--~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~  252 (520)
                      +|.+...|+.   .+..+...++..++.++....  ..+.  -...++.+++.|.......+++..++.++..++.....
T Consensus       436 l~~l~~~l~~---~~~~vr~~~~~~L~~l~~~~~--~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~  510 (1230)
T 1u6g_C          436 VKALHKQMKE---KSVKTRQCCFNMLTELVNVLP--GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP  510 (1230)
T ss_dssp             HHHHHHHTTC---SCHHHHHHHHHHHHHHHHHST--TTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCG
T ss_pred             HHHHHHHhcc---CCHHHHHHHHHHHHHHHHHch--hhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCH
Confidence            3444444554   255565666777766654321  1111  12345667777765433458888888888887643222


Q ss_pred             h-HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CCcchhhh-hhchHHHHHHHcCCHHHHHHHHhcC-CChh
Q 010019          253 V-KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP-DDDQVVAS-QVYGYARRFAKIGIARALVHSLHAG-LSSP  328 (520)
Q Consensus       253 n-r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-dd~~v~~~-~a~~~a~~i~~~g~l~~Lv~lL~~~-~~~~  328 (520)
                      . -..+. ...++.|+..+......+...++.++..++.. .......+ ....+..     ..++.++..+... .+.+
T Consensus       511 ~~~~~~l-~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~-----~ll~~ll~~l~~~d~~~~  584 (1230)
T 1u6g_C          511 QVFHPHV-QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIK-----DLFTCTIKRLKAADIDQE  584 (1230)
T ss_dssp             GGGHHHH-TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHH-----HHHHHHHHHHSCSSSCHH
T ss_pred             HHHHhHH-HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHH-----HHHHHHHHHHhccCCCHH
Confidence            1 22222 36889999988775556666677777766621 00000000 0001111     2477888888533 3567


Q ss_pred             HHHHHHHHHHHhccC--hhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCc--hHHHHHhcCCHHHH
Q 010019          329 SLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS--NKSAIIENGGMDKL  404 (520)
Q Consensus       329 ~~~~a~~aL~~La~~--~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~--~k~~Iv~~g~l~~L  404 (520)
                      +...++.+|+.|+..  +...      .-++.++.+|.......  .....++.++..++.+..  .-..+. ...++.|
T Consensus       585 vr~~a~~~lg~L~~~~g~~~~------~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~-~~i~~~L  655 (1230)
T 1u6g_C          585 VKERAISCMGQIICNLGDNLG------SDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDLRPVL-GEGVPIL  655 (1230)
T ss_dssp             HHHHHHHHHHHHHHHTGGGCC------THHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCchhh------hhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCccccchHHHH-HHHHHHH
Confidence            888888899888732  2211      12344555544322211  355678888888875421  112222 2456777


Q ss_pred             HHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHhhhCh
Q 010019          405 IVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK-----FPNAQQLQRSSCFMIRNLVARNP  477 (520)
Q Consensus       405 v~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~-----~~~~~~vqk~A~~aL~nL~~~~~  477 (520)
                      ...++  ..+..++.+++.+|..++...++..       ..+.+..++..     ...+..+...+..+|..++...+
T Consensus       656 ~~~l~--~~~~~~r~~a~~al~~l~~~~~~~~-------~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~  724 (1230)
T 1u6g_C          656 ASFLR--KNQRALKLGTLSALDILIKNYSDSL-------TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYP  724 (1230)
T ss_dssp             HHHTT--SCCHHHHHHHHHHHHHHHHHCCTTC-------CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCG
T ss_pred             HHHHH--hCCHHHHHHHHHHHHHHHhcccccC-------CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCc
Confidence            77776  6789999999999999986443210       11222222211     13566777777778888865444

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=96.79  E-value=0.0095  Score=56.51  Aligned_cols=181  Identities=10%  Similarity=0.111  Sum_probs=114.2

Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh-HHHHHhcCCHHHHHHHHh-cCChHHHHHHHHHHHHhcCCCCcchhh
Q 010019          221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVV-KESYMELKIDELILEILS-RQRNDSIQSLYDAIRVLLTPDDDQVVA  298 (520)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n-r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~dd~~v~~  298 (520)
                      .+.+.+.  +.+-+....|+..|..++..++.. ...+  ...++.|...|. ..+..++..|+.+|..|+..  .+..|
T Consensus        19 ~l~~~l~--s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~--l~~~~   92 (242)
T 2qk2_A           19 DFYDKLE--EKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKG--LAKRF   92 (242)
T ss_dssp             THHHHHT--CSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--HGGGG
T ss_pred             HHHhhhc--cCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--HhhhH
Confidence            4566664  345666677777777765432111 0001  134667777884 55557888899999998842  11111


Q ss_pred             hhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHH
Q 010019          299 SQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARIC  378 (520)
Q Consensus       299 ~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~a  378 (520)
                      .   .+..     ..+|.|+..+.+. +..+...++.+|..+...... ..     .++.+...|.    +.++.+...+
T Consensus        93 ~---~~~~-----~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~~-~~-----ll~~l~~~l~----~~~~~vr~~~  153 (242)
T 2qk2_A           93 S---NYAS-----ACVPSLLEKFKEK-KPNVVTALREAIDAIYASTSL-EA-----QQESIVESLS----NKNPSVKSET  153 (242)
T ss_dssp             H---HHHH-----HHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSCH-HH-----HHHHHHHHTT----CSCHHHHHHH
T ss_pred             H---HHHH-----HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCCH-HH-----HHHHHHHHHc----CCChHHHHHH
Confidence            1   1121     2588999988863 467888889999888743211 11     1234444444    3457899999


Q ss_pred             HHHHHHhhCC--Cc--hHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019          379 CSLLSKLAGS--DS--NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (520)
Q Consensus       379 l~aL~~La~~--~~--~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~  430 (520)
                      +..|..+...  ++  ....+-  ..+|.|+.+|.  ..++.|+..|..+|..|+.
T Consensus       154 l~~l~~~l~~~~~~~~~~~~l~--~l~p~l~~~l~--D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          154 ALFIARALTRTQPTALNKKLLK--LLTTSLVKTLN--EPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             HHHHHHHHTTCCGGGCCHHHHH--HHHHHHHHHHT--SSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCccHHHHH--HHHHHHHHHhc--CCChHHHHHHHHHHHHHHH
Confidence            9999996533  22  223332  46888999997  6789999999999998884

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.77  E-value=0.045  Score=62.44  Aligned_cols=250  Identities=14%  Similarity=0.142  Sum_probs=151.6

Q ss_pred             ChHHHHHHHHHHHHHhcCChh--hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHH
Q 010019          232 DPEILNSGFAVVAASATGNEV--VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA  309 (520)
Q Consensus       232 ~~~v~~~a~~~L~~~~~~~e~--nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~  309 (520)
                      +.+-.+.|+.++..+|.....  .-+.+. .+.++.+++.+......+...|-.++..+...-.+         +  .+ 
T Consensus        65 ~k~~~~~a~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~---------~--a~-  131 (986)
T 2iw3_A           65 DKKTAANAMQAVAHIANQSNLSPSVEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNP---------V--AI-  131 (986)
T ss_dssp             SHHHHHHHHHHHHHHTCTTTCCTTTHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG---------G--GH-
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCCCcccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH---------H--HH-
Confidence            333337888888888843221  112222 25667777766654445555544444444321111         0  11 


Q ss_pred             HcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-Chhh-HHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC
Q 010019          310 KIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEI-CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG  387 (520)
Q Consensus       310 ~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~-~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~  387 (520)
                       ...+|.|+..|.....=..+..++.+|..|+. .++. ...+.  ..||.+-++|.+.    .++|..+|..++..++.
T Consensus       132 -~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~d~----k~~v~~~~~~~~~~~~~  204 (986)
T 2iw3_A          132 -KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMP--ELIPVLSETMWDT----KKEVKAAATAAMTKATE  204 (986)
T ss_dssp             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHH--HHHHHHHHHTTCS----SHHHHHHHHHHHHHHGG
T ss_pred             -HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhcc--chhcchHhhcccC----cHHHHHHHHHHHHHHHh
Confidence             23589999999865433467788888888883 2332 12222  3467777777653    35899999999988886


Q ss_pred             CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHH
Q 010019          388 SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCF  467 (520)
Q Consensus       388 ~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~  467 (520)
                      .-+|++.-   ..+|.|++.|...    +-...++-.|+.-++=..-....+  +=.+|.|.+.|..  ....++|+++.
T Consensus       205 ~~~n~d~~---~~~~~~~~~~~~p----~~~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~--~~~~~~r~~~~  273 (986)
T 2iw3_A          205 TVDNKDIE---RFIPSLIQCIADP----TEVPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNE--RETGIKRKSAV  273 (986)
T ss_dssp             GCCCTTTG---GGHHHHHHHHHCT----THHHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTS--SSHHHHHHHHH
T ss_pred             cCCCcchh---hhHHHHHHHhcCh----hhhHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhcc--CcchhheeeEE
Confidence            55555422   5689999999832    224445555554433111000000  0135788888854  46778899999


Q ss_pred             HHHHHhh--hChhhHHHHHhCCHHHHHHHHHHh--CcchHHHHHHHHHHc
Q 010019          468 MIRNLVA--RNPENRKLLLSNGVEKLIRQAKEN--HEICKDAATDALRDL  513 (520)
Q Consensus       468 aL~nL~~--~~~e~~~~l~~~G~~~lL~~~~~~--h~~~~~~a~aALr~L  513 (520)
                      .+.||+.  .+|.....|+-. ..|-|......  +|+++.+|..|+..|
T Consensus       274 ~~~n~~~lv~~~~~~~~f~~~-l~p~~~~~~~~~~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          274 IIDNMCKLVEDPQVIAPFLGK-LLPGLKSNFATIADPEAREVTLRALKTL  322 (986)
T ss_dssp             HHHHHHTTCCCHHHHHHHHTT-THHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred             EEcchhhhcCCHHHHhhhhhh-hhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            9999984  688888888864 33444444444  478999999988776

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.51  E-value=0.34  Score=55.26  Aligned_cols=305  Identities=11%  Similarity=0.049  Sum_probs=176.2

Q ss_pred             HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHH
Q 010019          121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTM  200 (520)
Q Consensus       121 ~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~L  200 (520)
                      ...++.+...+..       .+.++...+...+..+...  +...+  ....+.+..|.+.+...  .+.   ..|+.++
T Consensus        13 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~k--~~~---~~a~~~~   76 (986)
T 2iw3_A           13 IKVLEELFQKLSV-------ATADNRHEIASEVASFLNG--NIIEH--DVPEHFFGELAKGIKDK--KTA---ANAMQAV   76 (986)
T ss_dssp             HHHHHHHHHHHTT-------CCTTTHHHHHHHHHHHHTS--SCSSS--SCCHHHHHHHHHHHTSH--HHH---HHHHHHH
T ss_pred             HHHHHHHHhhccc-------cchhHHHHHHHHHHHHHhc--ccccc--ccchhHHHHHHHHHhcc--CCH---HHHHHHH
Confidence            3445566665554       3345566777777777764  21111  11135666777766542  122   6677777


Q ss_pred             HHhhcccccch--hHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcC-ChhhHHHHHhcCCHHHHHHHHhcCCh-H
Q 010019          201 ALLVHDVQSTE--TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG-NEVVKESYMELKIDELILEILSRQRN-D  276 (520)
Q Consensus       201 a~l~~~~~~~~--~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~-~e~nr~~i~~~g~i~~Lv~lL~~~~~-~  276 (520)
                      ..++......+  +..--+.++.+++.+.  .....+...|-.++..++.. ++..   +  ..++|.|+..|.+... .
T Consensus        77 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--dk~~~v~~aa~~~~~~~~~~~~~~a---~--~~~~~~~~~~~~~~~kw~  149 (986)
T 2iw3_A           77 AHIANQSNLSPSVEPYIVQLVPAICTNAG--NKDKEIQSVASETLISIVNAVNPVA---I--KALLPHLTNAIVETNKWQ  149 (986)
T ss_dssp             HHHTCTTTCCTTTHHHHHTTHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSCGGG---H--HHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHhcCCCCCcccchHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhCCHHH---H--HHHHHHHHHHhccccchH
Confidence            77764331111  1111134555555543  23455655554444444322 2222   2  3468899999976544 5


Q ss_pred             HHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCCh
Q 010019          277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGI  356 (520)
Q Consensus       277 ~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv  356 (520)
                      ....|+.+|..|+...  +.      .-+..+.  ..||.+.+.|... .+++.+.+..++..++.--+|+..   ..-|
T Consensus       150 ~k~~~l~~~~~~~~~~--~~------~~~~~~~--~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~---~~~~  215 (986)
T 2iw3_A          150 EKIAILAAFSAMVDAA--KD------QVALRMP--ELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI---ERFI  215 (986)
T ss_dssp             HHHHHHHHHHHHHHHS--HH------HHHHHHH--HHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT---GGGH
T ss_pred             HHHHHHHHHHHHHHHh--HH------HHHHhcc--chhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch---hhhH
Confidence            5666888888887432  11      0112232  4688888888764 478888888888777632222211   1236


Q ss_pred             HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc--CCHH
Q 010019          357 DALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL--RSPE  434 (520)
Q Consensus       357 ~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~--~~~~  434 (520)
                      |.|+++|.+. +    + +..|.-.|+.-..-.+....... =.+|.|.+-|+  .....+++.++-++-|||.  ++|.
T Consensus       216 ~~~~~~~~~p-~----~-~~~~~~~l~~~tfv~~v~~~~l~-~~~p~l~r~l~--~~~~~~~r~~~~~~~n~~~lv~~~~  286 (986)
T 2iw3_A          216 PSLIQCIADP-T----E-VPETVHLLGATTFVAEVTPATLS-IMVPLLSRGLN--ERETGIKRKSAVIIDNMCKLVEDPQ  286 (986)
T ss_dssp             HHHHHHHHCT-T----H-HHHHHHHHTTCCCCSCCCHHHHH-HHHHHHHHHHT--SSSHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             HHHHHHhcCh-h----h-hHHHHHHhhcCeeEeeecchhHH-HHHHHHHhhhc--cCcchhheeeEEEEcchhhhcCCHH
Confidence            8999999973 2    2 45566666554433332222111 13577777776  4578899999999999994  6776


Q ss_pred             HHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019          435 NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV  473 (520)
Q Consensus       435 ~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~  473 (520)
                      -...++- ..+|-+-+..... .+|++...|..|+..|.
T Consensus       287 ~~~~f~~-~l~p~~~~~~~~~-~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          287 VIAPFLG-KLLPGLKSNFATI-ADPEAREVTLRALKTLR  323 (986)
T ss_dssp             HHHHHHT-TTHHHHHHHTTTC-CSHHHHHHHHHHHHHHH
T ss_pred             HHhhhhh-hhhhHHHHHhhcc-CCHHHHHHHHHHHHHHH
Confidence            6666543 3556665555444 68998888888888873

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=96.25  E-value=0.1  Score=49.21  Aligned_cols=184  Identities=11%  Similarity=0.095  Sum_probs=124.9

Q ss_pred             cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC-hhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchh
Q 010019          219 PKLLVNILIDGNEDPEILNSGFAVVAASATGN-EVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV  297 (520)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~-e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~  297 (520)
                      +..+..+|.  ..++.++..++.+|..+...- ...+...++ ..++.+++++++.++.+.-.|.++|..|..+-.... 
T Consensus        35 l~~L~~LL~--dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~-  110 (265)
T 3b2a_A           35 LFLILELAG--EDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS-  110 (265)
T ss_dssp             HHHHHHHTT--SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH-
T ss_pred             HHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH-
Confidence            345566663  567888888898888876542 223333333 578999999988777777889999999887654322 


Q ss_pred             hhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHH
Q 010019          298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARI  377 (520)
Q Consensus       298 ~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~  377 (520)
                              ..+.+  .+..|.+++++. +.-....++-.|..|-..... ..     .+..+.+++.+    .|..+...
T Consensus       111 --------~~y~K--l~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-~~-----V~~~l~sLl~S----kd~~vK~a  169 (265)
T 3b2a_A          111 --------KTFLK--AAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-KL-----VRTYINELVVS----PDLYTKVA  169 (265)
T ss_dssp             --------HHHHH--HHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-HH-----HHHHHHHHHTC----SSHHHHHH
T ss_pred             --------HHHHH--HHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-HH-----HHHHHHHHHhC----CChhHHHH
Confidence                    13333  467888888853 455667888888888433222 22     24578888833    24689999


Q ss_pred             HHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 010019          378 CCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR  431 (520)
Q Consensus       378 al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~  431 (520)
                      ++.+|.++++..+.+..+ + +.+.-+-.+|+  +.++.+++-|+.+|-.+..+
T Consensus       170 gl~~L~eia~~S~D~~i~-~-~I~~eI~elL~--~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          170 GFCLFLNMLNSSADSGHL-T-LILDEIPSLLQ--NDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             HHHHHHHHGGGCSSCCCG-G-GTTTTHHHHHT--CSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhhcccCCHHHH-H-HHHHHHHHHHc--CCCHHHHHHHHHHHHHHHcC
Confidence            999999998643222211 1 23444666787  77999999999999998864

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.59  E-value=0.26  Score=48.99  Aligned_cols=134  Identities=13%  Similarity=0.181  Sum_probs=98.7

Q ss_pred             HHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccC
Q 010019          333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS  412 (520)
Q Consensus       333 a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~  412 (520)
                      ++-.|.-|..+.....-++++.||..+...+..    +|.++++++|.+|-..+....-...=. ..-+|.+++.++.|.
T Consensus       263 ~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinY----pN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~  337 (619)
T 3c2g_A          263 TFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQY----PNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHP  337 (619)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTS----SCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhcccccccceeecccceeEEEEeec----CCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCC
Confidence            333344444555567889999999998888774    345899999999988764432221111 245899999998775


Q ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCC-----CCHHHHHHHHHHHHHH
Q 010019          413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFP-----NAQQLQRSSCFMIRNL  472 (520)
Q Consensus       413 ~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~-----~~~~vqk~A~~aL~nL  472 (520)
                       +.+|...+.+.|+|...+......-.+..|++.++-..+.+++     .+..-.+-||..++|.
T Consensus       338 -eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~  401 (619)
T 3c2g_A          338 -DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC  401 (619)
T ss_dssp             -CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred             -CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence             6788999999999999877777777788999999998887665     3455566799888886

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=95.56  E-value=0.32  Score=46.45  Aligned_cols=188  Identities=9%  Similarity=0.068  Sum_probs=112.9

Q ss_pred             HHHHhcCChHHHHHHHHHHHH-hcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc--C
Q 010019          267 LEILSRQRNDSIQSLYDAIRV-LLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV--N  343 (520)
Q Consensus       267 v~lL~~~~~~~~~~a~~aL~~-Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~--~  343 (520)
                      .+.+.+..-..+++|...|.. ++.+. .+.... ..    .+.  ..+..|...|...++..+...+|.+|..|+.  .
T Consensus        22 ~~~l~s~~w~eRk~al~~L~~~~~~~~-~~i~~~-~~----~~~--~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~   93 (249)
T 2qk1_A           22 QERITSSKWKDRVEALEEFWDSVLSQT-KKLKST-SQ----NYS--NLLGIYGHIIQKDANIQAVALAAQSVELICDKLK   93 (249)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHTGGGC-CCBCCT-TC----CCH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHhcC-CccccC-cc----cHH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence            445555444666777777887 76431 111000 00    000  2366777778444556677889999999982  2


Q ss_pred             -hhhH-HHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCC-chHHHH-HhcCCHHHHHHHHhccCCCHHHHH
Q 010019          344 -DEIC-KSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD-SNKSAI-IENGGMDKLIVVSARFSDDASVLQ  419 (520)
Q Consensus       344 -~e~~-~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~-~~k~~I-v~~g~l~~Lv~lL~~~~~~~~v~~  419 (520)
                       +++. .....  .++.+++.+.+    ..+.|++.+..+|..++.+- .....- .+ ..++.|+..|+  +.++.+++
T Consensus        94 ~~~f~~~y~~~--llp~ll~~l~d----kk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~--~k~~~vk~  164 (249)
T 2qk1_A           94 TPGFSKDYVSL--VFTPLLDRTKE----KKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMK--HKTPQIRM  164 (249)
T ss_dssp             TTTSCHHHHHH--HHHHHHHGGGC----CCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTT--CSSHHHHH
T ss_pred             cccccHHHHHH--HHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHc--CCChHHHH
Confidence             2222 22211  24556665554    23578899999988887421 111000 00 24567777886  56899999


Q ss_pred             HHHHHHHHHhcCCHH---HHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019          420 EVMSIITVLSLRSPE---NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV  473 (520)
Q Consensus       420 ~a~~aL~nLa~~~~~---~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~  473 (520)
                      .++.+|..++...+.   .-...+....++.+.+.|..  .++.|+..|..++..++
T Consensus       165 ~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D--~~~~VR~aA~~~l~~i~  219 (249)
T 2qk1_A          165 ECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND--TQPAIRTIGFESFAILI  219 (249)
T ss_dssp             HHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC--SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHH
Confidence            999999998864432   22222324578899999943  58889888888888875

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=95.36  E-value=0.29  Score=49.46  Aligned_cols=217  Identities=7%  Similarity=0.047  Sum_probs=114.6

Q ss_pred             cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 010019          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV  253 (520)
Q Consensus       174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n  253 (520)
                      ++..|..=|.+   +++-+...|+.+|+.+....     +++ ...+.+.+.|.  +.++-+...|+-++..++...++ 
T Consensus       105 v~Nsl~kDl~~---~N~~iR~lALRtL~~I~~~~-----m~~-~l~~~lk~~L~--d~~pyVRk~A~l~~~kL~~~~pe-  172 (355)
T 3tjz_B          105 VTSSLTKDMTG---KEDSYRGPAVRALCQITDST-----MLQ-AIERYMKQAIV--DKVPSVSSSALVSSLHLLKCSFD-  172 (355)
T ss_dssp             GHHHHHHHHHS---SCHHHHHHHHHHHHHHCCTT-----THH-HHHHHHHHHHT--CSSHHHHHHHHHHHHHHTTTCHH-
T ss_pred             HHHHHHhhcCC---CcHhHHHHHHHHHhcCCCHH-----HHH-HHHHHHHHHcC--CCCHHHHHHHHHHHHHHhccCHH-
Confidence            34455554544   46777889999999987432     111 12234444554  45788988998888888765543 


Q ss_pred             HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC--ChhHHH
Q 010019          254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--SSPSLI  331 (520)
Q Consensus       254 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~--~~~~~~  331 (520)
                        .+ + +.++.+-+++.+.+..++-+|..+|..++..|.  .                .+..|+..+..+.  ++-.+.
T Consensus       173 --~v-~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--~----------------a~~kLv~~l~~~~l~~~~~q~  230 (355)
T 3tjz_B          173 --VV-K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--L----------------AVSKMISKFTRHGLKSPFAYC  230 (355)
T ss_dssp             --HH-H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--H----------------HHHHHHHHHHSSCCSCHHHHH
T ss_pred             --HH-H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--H----------------HHHHHHHHHhcCCCcChHHHH
Confidence              32 3 678888888887666777788888888876541  1                2344555555532  333333


Q ss_pred             HHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhcc
Q 010019          332 SASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF  411 (520)
Q Consensus       332 ~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~  411 (520)
                      .....+..+...++       .+--..+++++.....+.+..|+-+|+.+|..|...+.   .+. ..++..|..+|.  
T Consensus       231 ~llr~l~~~~~~d~-------~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~---~~~-~~a~~~L~~fLs--  297 (355)
T 3tjz_B          231 MMIRVASRQLEDED-------GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA---KEL-APAVSVLQLFCS--  297 (355)
T ss_dssp             HHHHHHTCC------------------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHH--
T ss_pred             HHHHHHHHhccccc-------hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH---HHH-HHHHHHHHHHHc--
Confidence            33333334432221       01112334444433333456899999999988865322   122 245667777787  


Q ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHH
Q 010019          412 SDDASVLQEVMSIITVLSLRSPENAA  437 (520)
Q Consensus       412 ~~~~~v~~~a~~aL~nLa~~~~~~~~  437 (520)
                      +.++.++-.|+..|..+...+|+..+
T Consensus       298 s~d~niryvaLr~L~~l~~~~P~~v~  323 (355)
T 3tjz_B          298 SPKAALRYAAVRTLNKVAMKHPSAVT  323 (355)
T ss_dssp             SSSSSSHHHHHHCC------------
T ss_pred             CCCchHHHHHHHHHHHHHHHCcHHHH
Confidence            67889999999999999887775543

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=95.27  E-value=1.7  Score=39.57  Aligned_cols=197  Identities=12%  Similarity=0.174  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcC
Q 010019          234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG  312 (520)
Q Consensus       234 ~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g  312 (520)
                      .++..|+..+..++...++.-+.+     +..|+-+++.... +..+..++++..++..   ++          .++. +
T Consensus        47 tV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i---~P----------e~v~-~  107 (253)
T 2db0_A           47 TVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKE---KP----------ELVK-S  107 (253)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHH---CH----------HHHH-H
T ss_pred             HHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHh---CH----------HHHH-h
Confidence            467788888888776555443333     3456656665433 7778888888888753   23          3332 3


Q ss_pred             CHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCch
Q 010019          313 IARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSN  391 (520)
Q Consensus       313 ~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~  391 (520)
                      .+|.|..=.+-+ |+.++.+...+|..++ .|++.-..++     +-+..++.+ ++.   .=.-.++..+..|.   +|
T Consensus       108 vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~~v~-----rdi~smlts-kd~---~Dkl~aLnFi~alG---en  174 (253)
T 2db0_A          108 MIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMASIV-----RDFMSMLSS-KNR---EDKLTALNFIEAMG---EN  174 (253)
T ss_dssp             HHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHHHHH-----HHHHHHTSC-SSH---HHHHHHHHHHHTCC---TT
T ss_pred             hHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHHHHH-----HHHHHHhcC-CCh---HHHHHHHHHHHHHh---cc
Confidence            567777666655 7788899999999999 6787665555     456667763 222   22334555555444   33


Q ss_pred             HHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010019          392 KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN  471 (520)
Q Consensus       392 k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~n  471 (520)
                      ...-+. -.+|.|..+|.  .++.-|+..++-+|.+|+.-+|..++.+.      ..++-|..  .+..|++..--+|.-
T Consensus       175 ~~~yv~-PfLprL~aLL~--D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D--~S~lv~~~V~egL~r  243 (253)
T 2db0_A          175 SFKYVN-PFLPRIINLLH--DGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELND--TSSLVNKTVKEGISR  243 (253)
T ss_dssp             THHHHG-GGHHHHHGGGG--CSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCC--SCHHHHHHHHHHHHH
T ss_pred             CccccC-cchHHHHHHHc--CcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcC--cHHHHHHHHHHHHHH
Confidence            333332 46899999997  77999999999999999999988665543      22333322  345577776666666


Q ss_pred             Hh
Q 010019          472 LV  473 (520)
Q Consensus       472 L~  473 (520)
                      ++
T Consensus       244 l~  245 (253)
T 2db0_A          244 LL  245 (253)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=95.11  E-value=0.21  Score=47.75  Aligned_cols=191  Identities=8%  Similarity=0.090  Sum_probs=109.9

Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHH-HhcCChhhHHHHHh-cCCHHHHHHHHhcC-ChHHHHHHHHHHHHhcCCCCcc-hh
Q 010019          222 LVNILIDGNEDPEILNSGFAVVAA-SATGNEVVKESYME-LKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQ-VV  297 (520)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~-~~~~~e~nr~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~dd~~-v~  297 (520)
                      +.+.|.  +.+-+....++..|.. ++..+......-.+ ...+..|...|... +..++..|+.+|..|+.+=  + ..
T Consensus        21 f~~~l~--s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l--~~~~   96 (249)
T 2qk1_A           21 FQERIT--SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL--KTPG   96 (249)
T ss_dssp             HHHHHT--CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH--CTTT
T ss_pred             HHHHhh--cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc--cccc
Confidence            334443  3455666677777877 65332211000001 12456777777433 3367778999999988421  1 11


Q ss_pred             hhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHH
Q 010019          298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVAR  376 (520)
Q Consensus       298 ~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~  376 (520)
                      |..  .|...     .+|++++.+++. ...++..+..+|-.++. .+.    +...+-++.+++-|-....+.++.+..
T Consensus        97 f~~--~y~~~-----llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~----~~~~~~l~~ll~~l~~~l~~k~~~vk~  164 (249)
T 2qk1_A           97 FSK--DYVSL-----VFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDP----LASSGRNEDMLKDILEHMKHKTPQIRM  164 (249)
T ss_dssp             SCH--HHHHH-----HHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCT----TCTTCTTHHHHHHHHHHTTCSSHHHHH
T ss_pred             ccH--HHHHH-----HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccc----cccCCcHHHHHHHHHHHHcCCChHHHH
Confidence            110  12222     478999988764 35677777777777763 111    111111333333332222234578999


Q ss_pred             HHHHHHHHhhCC-Cch-HH--HHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019          377 ICCSLLSKLAGS-DSN-KS--AIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL  430 (520)
Q Consensus       377 ~al~aL~~La~~-~~~-k~--~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~  430 (520)
                      .++.+|..++.. +.. ..  .-+.-..+|.|..+|.  ..++.|++.|..+|..++.
T Consensus       165 ~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~--D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          165 ECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN--DTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence            999999999733 221 11  1221256899999997  6689999999999998873

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=95.00  E-value=1.8  Score=39.43  Aligned_cols=186  Identities=14%  Similarity=0.154  Sum_probs=120.6

Q ss_pred             CHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010019          262 IDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA  341 (520)
Q Consensus       262 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La  341 (520)
                      .+..++.+|...-=.++.||...+..++..-.             .+.+ -.+..|+-+++....-+.-...+.+++.++
T Consensus        33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~-------------el~e-pl~~kL~vm~~ksEaIpltqeIa~a~G~la   98 (253)
T 2db0_A           33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTRE-------------DLYE-PMLKKLFSLLKKSEAIPLTQEIAKAFGQMA   98 (253)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG-------------GGHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH-------------HHHH-HHHHHHHHHHhhcccCchHHHHHHHHhHHH
Confidence            45667777754222688999999998875321             1111 235556666666443345577888999998


Q ss_pred             -cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHH
Q 010019          342 -VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQ  419 (520)
Q Consensus       342 -~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~  419 (520)
                       .+++....++     |.+..=.+    -+++.+.-....+|..++ .+|+.-..|     +.-+..++.  +.+..=+-
T Consensus        99 ~i~Pe~v~~vV-----p~lfanyr----igd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smlt--skd~~Dkl  162 (253)
T 2db0_A           99 KEKPELVKSMI-----PVLFANYR----IGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLS--SKNREDKL  162 (253)
T ss_dssp             HHCHHHHHHHH-----HHHHHHSC----CCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTS--CSSHHHHH
T ss_pred             HhCHHHHHhhH-----HHHHHHHh----cCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhc--CCChHHHH
Confidence             6777654443     33333222    345678888888998888 456544433     446777887  66655566


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHH
Q 010019          420 EVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL  484 (520)
Q Consensus       420 ~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~  484 (520)
                      .++..|..|...++...     .-.++.+..+|  |.++.-|...|.-+|-|++..+|..|+.+.
T Consensus       163 ~aLnFi~alGen~~~yv-----~PfLprL~aLL--~D~deiVRaSaVEtL~~lA~~npklRkii~  220 (253)
T 2db0_A          163 TALNFIEAMGENSFKYV-----NPFLPRIINLL--HDGDEIVRASAVEALVHLATLNDKLRKVVI  220 (253)
T ss_dssp             HHHHHHHTCCTTTHHHH-----GGGHHHHHGGG--GCSSHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHhccCcccc-----CcchHHHHHHH--cCcchhhhHHHHHHHHHHHHcCHHHHHHHH
Confidence            67777776665443332     23467888777  557888888899999999888888776544

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=94.68  E-value=1  Score=42.47  Aligned_cols=149  Identities=12%  Similarity=0.207  Sum_probs=99.4

Q ss_pred             hhhHHHHHhcCChHHHHHHHhccCC-------CCcHHHHHHHHHHHHHhhCCCchHHHHHhc-CCHHHHHHHHhccCCCH
Q 010019          344 DEICKSVAENGGIDALLRCIDDSGL-------QGNKTVARICCSLLSKLAGSDSNKSAIIEN-GGMDKLIVVSARFSDDA  415 (520)
Q Consensus       344 ~e~~~~i~~~Ggv~~Ll~lL~~~~~-------~~~~~v~~~al~aL~~La~~~~~k~~Iv~~-g~l~~Lv~lL~~~~~~~  415 (520)
                      .+..+.+ ..||+..|+.+|.....       ..+...+..++.+|+.|..+..+...+.+. +++..|...|.  +.++
T Consensus        34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~--s~~~  110 (233)
T 2f31_A           34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD--PAVP  110 (233)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCC--TTSH
T ss_pred             cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhC--CCCc
Confidence            3566777 57899999999875321       114578899999999999887777777654 56788888886  7789


Q ss_pred             HHHHHHHHHHHHHhcCCH-HH-HHHHHh----------cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhCh------
Q 010019          416 SVLQEVMSIITVLSLRSP-EN-AARAME----------AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP------  477 (520)
Q Consensus       416 ~v~~~a~~aL~nLa~~~~-~~-~~~i~~----------~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~------  477 (520)
                      .++..++..|+.+|.-.. +. ...+.+          ..-...+++.++. .++.+. +.+|+.+-|..-.++      
T Consensus       111 ~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~-~~~~e~-~~~~m~lIN~li~~~~dl~~R  188 (233)
T 2f31_A          111 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS-GTSIAL-KVGCLQLINALITPAEELDFR  188 (233)
T ss_dssp             HHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTST-TSCHHH-HHHHHHHHHHHHTTCCCHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhc-CChHHH-HHHHHHHHHHHHCCCCCHHHH
Confidence            999999999999987432 11 222211          1123345555533 234444 456777667654433      


Q ss_pred             -hhHHHHHhCCHHHHHHHHHH
Q 010019          478 -ENRKLLLSNGVEKLIRQAKE  497 (520)
Q Consensus       478 -e~~~~l~~~G~~~lL~~~~~  497 (520)
                       ..|..|...|..+++..+..
T Consensus       189 ~~lR~ef~~~Gl~~il~~l~~  209 (233)
T 2f31_A          189 VHIRSELMRLGLHQVLQELRE  209 (233)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHCChHHHHHHHhc
Confidence             23567778899999987764

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=94.48  E-value=4.7  Score=46.39  Aligned_cols=96  Identities=11%  Similarity=0.087  Sum_probs=62.7

Q ss_pred             CcHHHHHHHHHHHHHhhCCCch---HHHHHhcCCHHHHHHHHhccC---CCHHHHHHHHHHHHHHhc---CCHHHHHHHH
Q 010019          370 GNKTVARICCSLLSKLAGSDSN---KSAIIENGGMDKLIVVSARFS---DDASVLQEVMSIITVLSL---RSPENAARAM  440 (520)
Q Consensus       370 ~~~~v~~~al~aL~~La~~~~~---k~~Iv~~g~l~~Lv~lL~~~~---~~~~v~~~a~~aL~nLa~---~~~~~~~~i~  440 (520)
                      .+....+++|.+++.+++....   +..+.  ..++.|+.++....   ..+.++..+||+|...+.   ++++.-..  
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~--~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~--  540 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVV--TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRT--  540 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHH--
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHH--HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHH--
Confidence            4578999999999999976532   22233  46888888886311   123455678899886552   23433222  


Q ss_pred             hcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019          441 EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (520)
Q Consensus       441 ~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~  474 (520)
                         .+..+++.|  +.++++||..|||++.+++.
T Consensus       541 ---vl~~L~~~l--~~~~~~v~~~A~~al~~l~~  569 (1023)
T 4hat_C          541 ---VILKLFEFM--HETHEGVQDMACDTFIKIVQ  569 (1023)
T ss_dssp             ---HHHHHHHHT--TCSCHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHh--hcCCHHHHHHHHHHHHHHHH
Confidence               233344444  44578999999999999975

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=93.92  E-value=0.2  Score=49.80  Aligned_cols=124  Identities=11%  Similarity=0.122  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHH
Q 010019          373 TVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAM  452 (520)
Q Consensus       373 ~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L  452 (520)
                      .|+..+..+|..|....+.-+-+++.+|+..+...++  ..+..+.+.+|..|...+. ....+..= -...++.+++.+
T Consensus       258 QVvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~Tvin--YpN~~l~RaG~KLLLQVSD-aksL~~t~-L~e~LPFi~~~i  333 (619)
T 3c2g_A          258 QVIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQ--YPNNDLIRAGCKLLLQVSD-AKALAKTP-LENILPFLLRLI  333 (619)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHTT-CGGGGTSC-CTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccceeecccceeEEEEee--cCCcHHHHhhhheeeeecc-hHHHhhcc-ccccchHHHHHh
Confidence            3556666666555544444456899999999999998  5688999999999988763 22211111 134678999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCcc
Q 010019          453 LKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHEI  501 (520)
Q Consensus       453 ~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~~  501 (520)
                      ..|++ .+|...+...|.|.+++.....+.-+..|+..+|.....+++.
T Consensus       334 ~~h~e-DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~  381 (619)
T 3c2g_A          334 EIHPD-DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPR  381 (619)
T ss_dssp             HHCCC-HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCC
T ss_pred             ccCCC-cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCC
Confidence            99964 5677899999999999888888888899999999999988863

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=93.88  E-value=1.7  Score=41.43  Aligned_cols=178  Identities=12%  Similarity=0.186  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh----HHHH-HHHHHHHHhcCCCCcchhhhhhchHHHHHHH
Q 010019          236 LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----DSIQ-SLYDAIRVLLTPDDDQVVASQVYGYARRFAK  310 (520)
Q Consensus       236 ~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~----~~~~-~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~  310 (520)
                      .+.++..+..+|+ |++.|..|++++..--|-..|+..+.    +.++ ...++++.|...||..+        ..-+.+
T Consensus        73 VcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eV--------i~fLL~  143 (268)
T 2fv2_A           73 VCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEV--------INFLLT  143 (268)
T ss_dssp             HHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHH--------HHHHHH
T ss_pred             HHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHH--------HHHHHh
Confidence            3566666777765 78899999999998888899987643    4444 47889999998777544        224457


Q ss_pred             cCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHh----cCCh-HHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010019          311 IGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE----NGGI-DALLRCIDDSGLQGNKTVARICCSLLSKL  385 (520)
Q Consensus       311 ~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~----~Ggv-~~Ll~lL~~~~~~~~~~v~~~al~aL~~L  385 (520)
                      .+.+|..+..|+.|++ -.+.-|...+..+..++.--..+..    --.| ..|-.+...-.+.+++.+.+..+++--.|
T Consensus       144 tEiiplCLrime~Gse-lSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRL  222 (268)
T 2fv2_A          144 TEIIPLCLRIMESGSE-LSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRL  222 (268)
T ss_dssp             TTHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhccH-HHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            7899999999998863 2233344444444433332111111    0001 12222222222334578999999999999


Q ss_pred             hCCCchHHHHHhcCCHH------HHHHHHhccCCCHHHHHHHHHHHHHH
Q 010019          386 AGSDSNKSAIIENGGMD------KLIVVSARFSDDASVLQEVMSIITVL  428 (520)
Q Consensus       386 a~~~~~k~~Iv~~g~l~------~Lv~lL~~~~~~~~v~~~a~~aL~nL  428 (520)
                      +.++..++++.+.  +|      .+-..++   +++..+++-...+.|+
T Consensus       223 sdn~rar~aL~~~--LP~~Lrd~tf~~~l~---~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          223 SDNPRAREALRQC--LPDQLKDTTFAQVLK---DDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             TTSHHHHHHHHHH--SCGGGTSSTTHHHHT---SCHHHHHHHHHHHHHS
T ss_pred             hcCHHHHHHHHHh--CcHHhhChHHHHHHh---cCHHHHHHHHHHHHhc
Confidence            9999988888652  22      1223332   4777777766666654

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=93.55  E-value=10  Score=43.08  Aligned_cols=327  Identities=10%  Similarity=0.007  Sum_probs=154.1

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCC----CChhhHHHH--HhcCcHHHHHHHHhhc----cc--Cc-
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGN----EGSVNAAVA--TKNGGVELVCSICYKM----RC--GS-  189 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~----~~~~~r~~i--~~~Gaip~Lv~lL~~~----~~--~~-  189 (520)
                      .+..|.+.+.+       ++...+..++..|..+|++-    .+++.+..+  .-....|.++.++...    ..  .+ 
T Consensus       124 ll~~L~~~l~s-------~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~  196 (960)
T 1wa5_C          124 LLSDLASRLSN-------DDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNK  196 (960)
T ss_dssp             HHHHHHTTCCS-------SCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--C
T ss_pred             HHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            45666666554       45556777888888888741    122222211  1123356666655321    00  11 


Q ss_pred             H------HHHHHHHHHHHHhhcccccchhHHhc---CCcHHHHHHHhcCC----CC---------hHHHHHHHHHHHHHh
Q 010019          190 K------RVLDSCLKTMALLVHDVQSTETFRTG---GGPKLLVNILIDGN----ED---------PEILNSGFAVVAASA  247 (520)
Q Consensus       190 ~------~~~~~al~~La~l~~~~~~~~~i~~~---ggi~~Lv~lL~~~~----~~---------~~v~~~a~~~L~~~~  247 (520)
                      .      ..+..+++.+..+....  .+.....   .-++.+..+|....    .+         .++..+++.++..++
T Consensus       197 ~~~~~~~~~~~~~~k~~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~  274 (960)
T 1wa5_C          197 ASLNILFDVLLVLIKLYYDFNCQD--IPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYT  274 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSC--CCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHH
Confidence            1      11223444444433111  1222221   12345566664311    00         135566777777666


Q ss_pred             cCChhhHHHHHhcCCHHHHHHHHhcC-----ChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHh
Q 010019          248 TGNEVVKESYMELKIDELILEILSRQ-----RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH  322 (520)
Q Consensus       248 ~~~e~nr~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~  322 (520)
                      ..+...-...+ ...++..+.++...     .+.+...++..+..++.....+..|. ..++...+++    +.++..|.
T Consensus       275 ~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~-~~~~l~~li~----~~i~~~m~  348 (960)
T 1wa5_C          275 TRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFN-NESAMNNITE----QIILPNVT  348 (960)
T ss_dssp             HHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGC-SHHHHHHHHH----HTHHHHHS
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHc-CchHHHHHHH----HHhHHhcC
Confidence            54432211111 13455666666531     23666778888877765332221110 0122333332    12222221


Q ss_pred             c---------------------CCC-hhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccC--CCCcHHHHHHH
Q 010019          323 A---------------------GLS-SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG--LQGNKTVARIC  378 (520)
Q Consensus       323 ~---------------------~~~-~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~--~~~~~~v~~~a  378 (520)
                      -                     ..+ ......+..+|..|+..-.  +.++. -.++.+...+..+.  ...+....+.|
T Consensus       349 ~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaa  425 (960)
T 1wa5_C          349 LREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLY  425 (960)
T ss_dssp             CCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHHH-HHHHHHHHHHHHHHC----CHHHHHHH
T ss_pred             CCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHH
Confidence            0                     011 1234455666666663221  12211 01233333444211  12345788899


Q ss_pred             HHHHHHhhCCCchHHHHHhc-----CCHH----HHHHHHhcc-CCCHHHHHHHHHHHHHHhcC-CHHHHHHHHhcCcHHH
Q 010019          379 CSLLSKLAGSDSNKSAIIEN-----GGMD----KLIVVSARF-SDDASVLQEVMSIITVLSLR-SPENAARAMEAGSGDL  447 (520)
Q Consensus       379 l~aL~~La~~~~~k~~Iv~~-----g~l~----~Lv~lL~~~-~~~~~v~~~a~~aL~nLa~~-~~~~~~~i~~~G~i~~  447 (520)
                      +.+++.++.....+..-...     ...+    .++..|... ..++.++..+||+|..++.. .++..     ...++.
T Consensus       426 l~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l-----~~~l~~  500 (960)
T 1wa5_C          426 IYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL-----IELMPI  500 (960)
T ss_dssp             HHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHH-----HHHHHH
T ss_pred             HHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHH-----HHHHHH
Confidence            99999998432111000000     1111    233334421 12899999999999998853 22222     224566


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019          448 AIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (520)
Q Consensus       448 lv~~L~~~~~~~~vqk~A~~aL~nL~~  474 (520)
                      +++.|..  .+..|+..||+||.+++.
T Consensus       501 l~~~L~d--~~~~V~~~A~~Al~~~~~  525 (960)
T 1wa5_C          501 LATFLQT--DEYVVYTYAAITIEKILT  525 (960)
T ss_dssp             HHHHTTC--SCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCC--CChhHHHHHHHHHHHHHh
Confidence            7777742  478999999999999975

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=93.21  E-value=2.4  Score=42.70  Aligned_cols=139  Identities=10%  Similarity=-0.036  Sum_probs=90.4

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHH
Q 010019          314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKS  393 (520)
Q Consensus       314 l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~  393 (520)
                      .+.+++++.+ +|...++-+..++..++..++-.  +   =++..+.+=|.+    +|+-+.-.|+++|+++...+ .-+
T Consensus        70 f~~v~kl~~s-~d~~lKrLvYLyl~~~~~~~~e~--i---Lv~Nsl~kDl~~----~N~~iR~lALRtL~~I~~~~-m~~  138 (355)
T 3tjz_B           70 FFAMTKLFQS-NDPTLRRMCYLTIKEMSCIAEDV--I---IVTSSLTKDMTG----KEDSYRGPAVRALCQITDST-MLQ  138 (355)
T ss_dssp             HHHHHGGGGC-CCHHHHHHHHHHHHHHTTTSSCG--G---GGHHHHHHHHHS----SCHHHHHHHHHHHHHHCCTT-THH
T ss_pred             HHHHHHHhcC-CCHHHHHHHHHHHHHhCCCHHHH--H---HHHHHHHhhcCC----CcHhHHHHHHHHHhcCCCHH-HHH
Confidence            4556667765 46667777777777777432211  1   112334433443    34577788888888886433 222


Q ss_pred             HHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019          394 AIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV  473 (520)
Q Consensus       394 ~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~  473 (520)
                      .     ..+.+.+.|.  ..+|.|++.|+.+...|...+|+..+     +.++.+.+++..  .++.|+-+|..++..+.
T Consensus       139 ~-----l~~~lk~~L~--d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d--~n~~V~~~Al~lL~ei~  204 (355)
T 3tjz_B          139 A-----IERYMKQAIV--DKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASS--DNIMVQYHALGLLYHVR  204 (355)
T ss_dssp             H-----HHHHHHHHHT--CSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTC--SSHHHHHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHcC--CCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcC--CCccHHHHHHHHHHHHH
Confidence            2     3345666776  67899999999999999887777543     567777777743  67888888888888885


Q ss_pred             hhCh
Q 010019          474 ARNP  477 (520)
Q Consensus       474 ~~~~  477 (520)
                      ..++
T Consensus       205 ~~d~  208 (355)
T 3tjz_B          205 KNDR  208 (355)
T ss_dssp             TTCH
T ss_pred             hhch
Confidence            4444

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=93.09  E-value=14  Score=41.74  Aligned_cols=145  Identities=13%  Similarity=0.007  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccC-CCCcHHHHHHHHHHHHHhhCC-CchHHHHHhcCCHHHHH
Q 010019          328 PSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG-LQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLI  405 (520)
Q Consensus       328 ~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~-~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~g~l~~Lv  405 (520)
                      ..++.++.+|+.++..-...    ....++.++.++...+ ++.++.|...+|.+|+.++.. ..+...+-  ..++.|+
T Consensus       479 ~~~eaal~~l~~iae~~~~~----~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~  552 (971)
T 2x1g_F          479 TKLEACIYSFQSVAEHFGGE----EKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINLLV  552 (971)
T ss_dssp             HHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcChh----hhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHH
Confidence            45677888899887421110    0133455666554333 112468999999999999832 11111111  2355566


Q ss_pred             HHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhC-hhhHHHHH
Q 010019          406 VVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARN-PENRKLLL  484 (520)
Q Consensus       406 ~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~-~e~~~~l~  484 (520)
                      ..|.     +.|+..||++|.++|....+...... ...+..+.+++....-+...+..+..+|..++... ++......
T Consensus       553 ~~l~-----~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~  626 (971)
T 2x1g_F          553 RGLN-----SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL  626 (971)
T ss_dssp             HHHH-----SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred             HHhC-----hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            6552     67899999999999954333222221 23445556666653345677778888888886532 24444433

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.06  E-value=3  Score=42.41  Aligned_cols=148  Identities=11%  Similarity=0.192  Sum_probs=98.7

Q ss_pred             hhhHHHHHhcCChHHHHHHHhccC-------CCCcHHHHHHHHHHHHHhhCCCchHHHHHhc-CCHHHHHHHHhccCCCH
Q 010019          344 DEICKSVAENGGIDALLRCIDDSG-------LQGNKTVARICCSLLSKLAGSDSNKSAIIEN-GGMDKLIVVSARFSDDA  415 (520)
Q Consensus       344 ~e~~~~i~~~Ggv~~Ll~lL~~~~-------~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~-g~l~~Lv~lL~~~~~~~  415 (520)
                      .+..+.++ .+|+..|+++|....       ...+......++.+|+.|..+..+...+.+. .++..|+..|.  +..+
T Consensus       100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~--s~~~  176 (383)
T 3eg5_B          100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD--PAVP  176 (383)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCC--TTSH
T ss_pred             cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhC--CCch
Confidence            35567776 789999999986421       1123578899999999999887777776654 45788888887  7789


Q ss_pred             HHHHHHHHHHHHHhcCCH-HH-HHHHHh----------cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhCh------
Q 010019          416 SVLQEVMSIITVLSLRSP-EN-AARAME----------AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP------  477 (520)
Q Consensus       416 ~v~~~a~~aL~nLa~~~~-~~-~~~i~~----------~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~------  477 (520)
                      .++..++-.|+.+|.-.. ++ ...+++          ..-...++..|+.. .+.+.+ .+|+.+-|..-.++      
T Consensus       177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~-~~~e~~-~~~m~lIN~li~~~~dl~~R  254 (383)
T 3eg5_B          177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALK-VGCLQLINALITPAEELDFR  254 (383)
T ss_dssp             HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHHH-HHHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc-CcHHHH-HHHHHHHHHHHcCCCCHHHH
Confidence            999999999999997442 32 222221          12244555555432 455553 56666666644332      


Q ss_pred             -hhHHHHHhCCHHHHHHHHH
Q 010019          478 -ENRKLLLSNGVEKLIRQAK  496 (520)
Q Consensus       478 -e~~~~l~~~G~~~lL~~~~  496 (520)
                       ..+..|...|+.+++..+.
T Consensus       255 ~~lR~ef~~~Gl~~il~~lr  274 (383)
T 3eg5_B          255 VHIRSELMRLGLHQVLQELR  274 (383)
T ss_dssp             HHHHHHHHHTTHHHHHHHHT
T ss_pred             HHHHHHHHHCChHHHHHHHh
Confidence             2356677889999998743

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=92.99  E-value=1.7  Score=49.41  Aligned_cols=216  Identities=10%  Similarity=0.054  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCC---CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHH
Q 010019          192 VLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN---EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE  268 (520)
Q Consensus       192 ~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~---~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~  268 (520)
                      ....++.++.++..+-..  ..  ...++.++.++..-.   .++.+...++++++..+..-..+.+.+  ..+++.|+.
T Consensus       480 ~~eaal~~l~~iae~~~~--~~--~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~  553 (971)
T 2x1g_F          480 KLEACIYSFQSVAEHFGG--EE--KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVR  553 (971)
T ss_dssp             HHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCh--hh--hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHH
Confidence            455666677776543211  00  133455666553322   268889999999988764211122211  135666777


Q ss_pred             HHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH--cCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhcc--C
Q 010019          269 ILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK--IGIARALVHSLHAGL-SSPSLISASIALKAVAV--N  343 (520)
Q Consensus       269 lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~--~g~l~~Lv~lL~~~~-~~~~~~~a~~aL~~La~--~  343 (520)
                      .|.   ..+...||++|.+|+..-  +.          .+.-  ...+..|..++.+.. +...+..+..++..++.  .
T Consensus       554 ~l~---~~v~~~A~~al~~l~~~~--~~----------~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~  618 (971)
T 2x1g_F          554 GLN---SSMSAQATLGLKELCRDC--QL----------QLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR  618 (971)
T ss_dssp             HHH---SSCHHHHHHHHHHHHHHC--HH----------HHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred             HhC---hHHHHHHHHHHHHHHHHH--HH----------hccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence            773   467788999999999432  21          2221  134566667777643 45666777777777763  2


Q ss_pred             hhhHHHHHhcCChHHHHHHHhccCCCC--cH---HHHHHHHHHHHHhhCC--C---c---------hHHHHHhcCCHHHH
Q 010019          344 DEICKSVAENGGIDALLRCIDDSGLQG--NK---TVARICCSLLSKLAGS--D---S---------NKSAIIENGGMDKL  404 (520)
Q Consensus       344 ~e~~~~i~~~Ggv~~Ll~lL~~~~~~~--~~---~v~~~al~aL~~La~~--~---~---------~k~~Iv~~g~l~~L  404 (520)
                      .+.+....+ ..+++++..+....+..  +.   .-...++..|+.+...  +   +         .-..+ ....++.+
T Consensus       619 ~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~l  696 (971)
T 2x1g_F          619 PEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLV-MQRTMPIF  696 (971)
T ss_dssp             TTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHH-HHTTHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHH-HHHHHHHH
Confidence            233333222 12345555443221111  11   2233444444444211  0   0         11112 23578888


Q ss_pred             HHHHhccCCCHHHHHHHHHHHHHHhc
Q 010019          405 IVVSARFSDDASVLQEVMSIITVLSL  430 (520)
Q Consensus       405 v~lL~~~~~~~~v~~~a~~aL~nLa~  430 (520)
                      ..++..+..++.+.+.+|+++..++.
T Consensus       697 ~~~l~~~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          697 KRIAEMWVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHH
Confidence            88888776788999999999998764

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=92.52  E-value=3.6  Score=41.82  Aligned_cols=147  Identities=12%  Similarity=0.210  Sum_probs=98.6

Q ss_pred             hhHHHHHhcCChHHHHHHHhccCC-------CCcHHHHHHHHHHHHHhhCCCchHHHHHhc-CCHHHHHHHHhccCCCHH
Q 010019          345 EICKSVAENGGIDALLRCIDDSGL-------QGNKTVARICCSLLSKLAGSDSNKSAIIEN-GGMDKLIVVSARFSDDAS  416 (520)
Q Consensus       345 e~~~~i~~~Ggv~~Ll~lL~~~~~-------~~~~~v~~~al~aL~~La~~~~~k~~Iv~~-g~l~~Lv~lL~~~~~~~~  416 (520)
                      +..+.+. .+|+..|+.+|.....       ..+......++.+|+.|..+..+...+... +++..|...|.  +.++.
T Consensus        39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~--s~~~~  115 (386)
T 2bnx_A           39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD--PAVPN  115 (386)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCC--TTSHH
T ss_pred             HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhC--CCCch
Confidence            5566675 6889999998864311       114578899999999999887777766554 56888888886  77899


Q ss_pred             HHHHHHHHHHHHhcCCH-HH-HHHHH----------hcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChh------
Q 010019          417 VLQEVMSIITVLSLRSP-EN-AARAM----------EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE------  478 (520)
Q Consensus       417 v~~~a~~aL~nLa~~~~-~~-~~~i~----------~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e------  478 (520)
                      ++..++..|..+|.-.. +- ...++          +..-...+++.+..+ .+... +.+|+.+-|..-.+++      
T Consensus       116 ~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~-~~a~m~lIN~lv~~~~dl~~R~  193 (386)
T 2bnx_A          116 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIAL-KVGCLQLINALITPAEELDFRV  193 (386)
T ss_dssp             HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT-SCHHH-HHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC-ChHHH-HHHHHHHHHHHHCCCCCHHHHH
Confidence            99999999999987432 11 22221          112234566666433 34454 4567766666544333      


Q ss_pred             -hHHHHHhCCHHHHHHHHH
Q 010019          479 -NRKLLLSNGVEKLIRQAK  496 (520)
Q Consensus       479 -~~~~l~~~G~~~lL~~~~  496 (520)
                       .|..|...|+.++|..+.
T Consensus       194 ~LR~Ef~~~GL~~il~~Lr  212 (386)
T 2bnx_A          194 HIRSELMRLGLHQVLQELR  212 (386)
T ss_dssp             HHHHHHHHTTHHHHHHHHT
T ss_pred             HHHHHHHHCChHHHHHHHh
Confidence             467778899999997664

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=91.95  E-value=19  Score=40.50  Aligned_cols=221  Identities=12%  Similarity=0.052  Sum_probs=119.3

Q ss_pred             cHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCC-CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHH
Q 010019          189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN-EDPEILNSGFAVVAASATGNEVVKESYMELKIDELIL  267 (520)
Q Consensus       189 ~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~-~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv  267 (520)
                      +-.....++.+++++..+-....    ..-++.++..|..-. +++.+...++++++..+..-..+.+ +. ..+++.|+
T Consensus       462 ~w~~~eaal~al~~i~~~~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~  535 (963)
T 2x19_B          462 SWQHTEALLYGFQSIAETIDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVL  535 (963)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHH
Confidence            33445556666666653321100    122345555553322 4678888999999887642122222 22 26888888


Q ss_pred             HHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhcc-C-h
Q 010019          268 EILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAV-N-D  344 (520)
Q Consensus       268 ~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~-~~~~~~~a~~aL~~La~-~-~  344 (520)
                      ..|..  ..++..||++|.+++.+-  +..+.   .|...     .+..|..++.... +...+..+..+++.++. - .
T Consensus       536 ~~l~~--~~V~~~A~~al~~l~~~~--~~~l~---p~~~~-----il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~  603 (963)
T 2x19_B          536 HALGN--PELSVSSVSTLKKICREC--KYDLP---PYAAN-----IVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQV  603 (963)
T ss_dssp             HHTTC--GGGHHHHHHHHHHHHHHT--GGGCT---TTHHH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCH
T ss_pred             HHhCC--chHHHHHHHHHHHHHHHH--HHHHH---hhHHH-----HHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCH
Confidence            88854  577888999999999532  11110   11112     3445556666533 45566777788888763 2 2


Q ss_pred             hhHHHHHhcCChHHHHHHHhccCCC-CcHHHH---HHHHHHHHHhh---CC--C------------------chHHHHHh
Q 010019          345 EICKSVAENGGIDALLRCIDDSGLQ-GNKTVA---RICCSLLSKLA---GS--D------------------SNKSAIIE  397 (520)
Q Consensus       345 e~~~~i~~~Ggv~~Ll~lL~~~~~~-~~~~v~---~~al~aL~~La---~~--~------------------~~k~~Iv~  397 (520)
                      +......+ ..+++++..+...... .+.+..   ...+.+|+.++   +.  +                  .....+ .
T Consensus       604 ~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  681 (963)
T 2x19_B          604 EEILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVV-L  681 (963)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHH-H
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHH-H
Confidence            33333332 2334444444321100 122222   24444444443   21  1                  001112 2


Q ss_pred             cCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019          398 NGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (520)
Q Consensus       398 ~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa  429 (520)
                      ...++.+..++..+..++.+.+.+|.++..++
T Consensus       682 ~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~  713 (963)
T 2x19_B          682 QQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSV  713 (963)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence            24567778888877788999999999999875

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=91.59  E-value=3.2  Score=40.81  Aligned_cols=155  Identities=9%  Similarity=0.091  Sum_probs=96.7

Q ss_pred             HHHhccChhhHHHHHhcCChHHHHH-HHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhcc--CC
Q 010019          337 LKAVAVNDEICKSVAENGGIDALLR-CIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF--SD  413 (520)
Q Consensus       337 L~~La~~~e~~~~i~~~Ggv~~Ll~-lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~--~~  413 (520)
                      |+-++.++.....+.+.+.-..++. ++....+...+..+--+++++.|+-.++..+..+...  .+.+++.+...  +.
T Consensus       126 lRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~--~~~il~~~~~~~~~~  203 (304)
T 3ebb_A          126 LRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQ--RESLMSHAIELKSGS  203 (304)
T ss_dssp             HHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHT--HHHHHHHHHGGGSSC
T ss_pred             HHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHH--HHHHHHHHHHHhcCC
Confidence            3333344444444443333344443 3332111223456788999999999998888887752  35555555432  35


Q ss_pred             CHHHHHHHHHHHHHHhcC-----CHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCH
Q 010019          414 DASVLQEVMSIITVLSLR-----SPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGV  488 (520)
Q Consensus       414 ~~~v~~~a~~aL~nLa~~-----~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~  488 (520)
                      +..++-.+...+.|++..     +.+....     ....+..++. ...+.+...-+..||.+|+...++..+.....|+
T Consensus       204 nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-----ll~~l~~il~-~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~  277 (304)
T 3ebb_A          204 NKNIHIALATLALNYSVCFHKDHNIEGKAQ-----CLSLISTILE-VVQDLEATFRLLVALGTLISDDSNAVQLAKSLGV  277 (304)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-----HHHHHHHHHT-TCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             ChhHHHHHHHHHHHHHHHHhhcCCchHHHH-----HHHHHHHHHh-ccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCH
Confidence            788999999999999863     1111111     2334444454 3467888889999999998877776666667799


Q ss_pred             HHHHHHHHHhC
Q 010019          489 EKLIRQAKENH  499 (520)
Q Consensus       489 ~~lL~~~~~~h  499 (520)
                      ...+..+....
T Consensus       278 ~~~v~~~~~~~  288 (304)
T 3ebb_A          278 DSQIKKYSSVS  288 (304)
T ss_dssp             HHHGGGGGGCC
T ss_pred             HHHHHHHHhCC
Confidence            98887777553

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=90.85  E-value=5.6  Score=37.92  Aligned_cols=159  Identities=14%  Similarity=0.090  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCCh---HHHHHHHHHHHHHhcC-ChhhHHHHHhcCCHHHH
Q 010019          191 RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDP---EILNSGFAVVAASATG-NEVVKESYMELKIDELI  266 (520)
Q Consensus       191 ~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~---~v~~~a~~~L~~~~~~-~e~nr~~i~~~g~i~~L  266 (520)
                      ...++||.-+-.++...+.|..|++++.+-.|-.+|+..+...   -+.-.++.+++.+... +.+.-..+.+.+++|..
T Consensus        71 nRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC  150 (268)
T 2fv2_A           71 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC  150 (268)
T ss_dssp             HHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred             hHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence            4468888888777766677899999988888888887655443   3555677888887643 33334455688999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhh
Q 010019          267 LEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI  346 (520)
Q Consensus       267 v~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~  346 (520)
                      ++.|..+++-...-|.-.+..+..+|..-.-+.+..+.--.+  ...+..++.-|...+.+.+++.....--.|+.++..
T Consensus       151 Lrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av--~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra  228 (268)
T 2fv2_A          151 LRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHV--AMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA  228 (268)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHH--HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence            999999875333335555555555443211111111211111  124555555555555667888999988899988877


Q ss_pred             HHHHH
Q 010019          347 CKSVA  351 (520)
Q Consensus       347 ~~~i~  351 (520)
                      +..+.
T Consensus       229 r~aL~  233 (268)
T 2fv2_A          229 REALR  233 (268)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76655

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=90.65  E-value=26  Score=39.48  Aligned_cols=316  Identities=10%  Similarity=0.043  Sum_probs=152.9

Q ss_pred             CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHh--cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 010019          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT--GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN  250 (520)
Q Consensus       173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~--~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~  250 (520)
                      ..++.|+..|..     +.++..|..++..++.+.  +..+..  ...++.+..++.+..-+.+.+...+.+++.++...
T Consensus       529 ~vl~~l~~~l~~-----~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~  601 (963)
T 2x19_B          529 SVLPLVLHALGN-----PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL  601 (963)
T ss_dssp             TTHHHHHHHTTC-----GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhCC-----chHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence            455666665532     345555566666655332  122221  12233445555543335677777788888876433


Q ss_pred             h-hhHHHHHhcCCHHHHHHHHhc----C-ChHHHH-------HHHHHHHHhcCCCCcchh----------hhhhchHHHH
Q 010019          251 E-VVKESYMELKIDELILEILSR----Q-RNDSIQ-------SLYDAIRVLLTPDDDQVV----------ASQVYGYARR  307 (520)
Q Consensus       251 e-~nr~~i~~~g~i~~Lv~lL~~----~-~~~~~~-------~a~~aL~~Ls~~dd~~v~----------~~~a~~~a~~  307 (520)
                      + +.+..+.+ ..+++++..+..    . +.+...       ..+.+++.+.......+.          +...+. ...
T Consensus       602 ~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  679 (963)
T 2x19_B          602 QVEEILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNP-VVV  679 (963)
T ss_dssp             CHHHHHHHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCH-HHH
T ss_pred             CHHHHHHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCc-hHH
Confidence            2 33443332 355666655542    2 222222       122333444321110000          000000 111


Q ss_pred             HHHcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhc-cCCCCcHHHHHHHHHHHH
Q 010019          308 FAKIGIARALVHSLHAGL-SSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDD-SGLQGNKTVARICCSLLS  383 (520)
Q Consensus       308 i~~~g~l~~Lv~lL~~~~-~~~~~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~-~~~~~~~~v~~~al~aL~  383 (520)
                      +. ...++.+..++.... +..+.+.+|.++..++.  .++..      .-++.++..+-. +...+.+.    .+.++.
T Consensus       680 ~~-~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~------~~l~~~~~~l~~~~~~~~~~~----~l~l~~  748 (963)
T 2x19_B          680 VL-QQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA------PMVPQLCEMLGRMYSTIPQAS----ALDLTR  748 (963)
T ss_dssp             HH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG------GGHHHHHHHHHHHHHHSCCHH----HHHHHH
T ss_pred             HH-HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc------ccHHHHHHHHHHHHHcCCccH----HHHHHH
Confidence            22 235777777777654 56788889999988752  22211      113444433321 11001122    334444


Q ss_pred             Hhh----CCCchHHHHHh--cCCHHHHHHHHhcc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC-----cHHHHHHH
Q 010019          384 KLA----GSDSNKSAIIE--NGGMDKLIVVSARF-SDDASVLQEVMSIITVLSLRSPENAARAMEAG-----SGDLAIQA  451 (520)
Q Consensus       384 ~La----~~~~~k~~Iv~--~g~l~~Lv~lL~~~-~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G-----~i~~lv~~  451 (520)
                      .+.    ..+.....+.+  ...+..++.++... .+.|++++.....|..+....+...   ....     .++.++..
T Consensus       749 ~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~---~~~~~~~~~i~~~~~~~  825 (963)
T 2x19_B          749 QLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLF---LCERLDVKAVFQCAVLA  825 (963)
T ss_dssp             HHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGG---GCTTSCHHHHHHHHHHH
T ss_pred             HHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHH---cCCcccHHHHHHHHHHH
Confidence            442    22222232322  12244555555532 3469999999999999886555432   1112     23445555


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHhhhC--hhhHHHHHhCCHHHHHHHHHH-----hCcchHHHHHHHHHHc
Q 010019          452 MLKFPNAQQLQRSSCFMIRNLVARN--PENRKLLLSNGVEKLIRQAKE-----NHEICKDAATDALRDL  513 (520)
Q Consensus       452 L~~~~~~~~vqk~A~~aL~nL~~~~--~e~~~~l~~~G~~~lL~~~~~-----~h~~~~~~a~aALr~L  513 (520)
                      ++ + .+..+.+.++..+.++....  ++....++..-...++..++.     .|+.+-+..+..|+.|
T Consensus       826 l~-~-~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l  892 (963)
T 2x19_B          826 LK-F-PEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFAL  892 (963)
T ss_dssp             TT-C-SCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHH
T ss_pred             cC-C-CCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHH
Confidence            64 4 57889999999999997643  244444555444444443321     2345555555555443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=89.83  E-value=3.6  Score=38.63  Aligned_cols=152  Identities=14%  Similarity=0.145  Sum_probs=90.8

Q ss_pred             hhHHhcCCcHHHHHHHhcCC---------CChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCHHHHHHHHhcCChHHHHH
Q 010019          211 ETFRTGGGPKLLVNILIDGN---------EDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEILSRQRNDSIQS  280 (520)
Q Consensus       211 ~~i~~~ggi~~Lv~lL~~~~---------~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~-g~i~~Lv~lL~~~~~~~~~~  280 (520)
                      ..| ..+|+..|+++|....         .+.+.+..++++|..++. +......++.. +++..|...|.+....+...
T Consensus        38 ~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~  115 (233)
T 2f31_A           38 QTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMID  115 (233)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHH
T ss_pred             HHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence            344 4678888888875421         135677788899988764 45566666654 57888888777655577777


Q ss_pred             HHHHHHHhcCCCC--c-chhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHH-hccChh-------hHHH
Q 010019          281 LYDAIRVLLTPDD--D-QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKA-VAVNDE-------ICKS  349 (520)
Q Consensus       281 a~~aL~~Ls~~dd--~-~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~-La~~~e-------~~~~  349 (520)
                      +...|..+|...+  . ....-.+.++.+...+..-..++++.|+...+.+.+.. |..|-| +....+       .+..
T Consensus       116 ~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~-~m~lIN~li~~~~dl~~R~~lR~e  194 (233)
T 2f31_A          116 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVG-CLQLINALITPAEELDFRVHIRSE  194 (233)
T ss_dssp             HHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHH-HHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHH
Confidence            8888888887654  2 22112233333333344567888888875444444444 444444 333222       2334


Q ss_pred             HHhcCChHHHHHHHhcc
Q 010019          350 VAENGGIDALLRCIDDS  366 (520)
Q Consensus       350 i~~~Ggv~~Ll~lL~~~  366 (520)
                      +... |+..+++-|+..
T Consensus       195 f~~~-Gl~~il~~l~~~  210 (233)
T 2f31_A          195 LMRL-GLHQVLQELREI  210 (233)
T ss_dssp             HHHT-THHHHHHHHHHC
T ss_pred             HHHC-ChHHHHHHHhcc
Confidence            4444 466666777653

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=89.22  E-value=34  Score=38.73  Aligned_cols=184  Identities=9%  Similarity=0.043  Sum_probs=100.5

Q ss_pred             ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC----cchhhhh--hchHH
Q 010019          232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD----DQVVASQ--VYGYA  305 (520)
Q Consensus       232 ~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd----~~v~~~~--a~~~a  305 (520)
                      .+-+...++|+++..+..-  .++.+  ..+++.++..|...+..++..||++|.+++...+    ....|..  -..|.
T Consensus       471 ~p~vr~~a~~~lg~~~~~~--~~~~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l  546 (960)
T 1wa5_C          471 HIILRVDAIKYIYTFRNQL--TKAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST  546 (960)
T ss_dssp             CHHHHHHHHHHHHHTGGGS--CHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred             CceehHHHHHHHHHHHhhC--CHHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH
Confidence            7889999999999987542  22222  2356777877775544677889999999987432    0011100  01122


Q ss_pred             HHHHHcCCHHHHHHHHhcCC-Ch---hHHHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhccC-CCCcHHHHHHH
Q 010019          306 RRFAKIGIARALVHSLHAGL-SS---PSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSG-LQGNKTVARIC  378 (520)
Q Consensus       306 ~~i~~~g~l~~Lv~lL~~~~-~~---~~~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~~~-~~~~~~v~~~a  378 (520)
                      .     ..++.|+.++.... .+   .....+..+|..++.  .++... ... ..++.|+..+.... +..++.+...+
T Consensus       547 ~-----~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~  619 (960)
T 1wa5_C          547 E-----ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LFP-QLLAQFIEIVTIMAKNPSNPRFTHYT  619 (960)
T ss_dssp             H-----HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GHH-HHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred             H-----HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HHH-HHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence            1     24566777777641 00   012344555555441  122221 111 12345555554421 22345677778


Q ss_pred             HHHHHHhhCC--CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010019          379 CSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS  429 (520)
Q Consensus       379 l~aL~~La~~--~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa  429 (520)
                      +.+|+.++..  ++....+. ...+|.+...|..+  .....+.+...+..+.
T Consensus       620 ~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~iL~~~--~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          620 FESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSED--IQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTT--CTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcchHHHHH-HHHHHHHHHHHHhh--hHhhHHHHHHHHHHHH
Confidence            8888888743  33333333 34678888888743  3345566666655543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=88.90  E-value=12  Score=36.48  Aligned_cols=137  Identities=10%  Similarity=0.059  Sum_probs=79.5

Q ss_pred             ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHh----cCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHH
Q 010019          232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS----RQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARR  307 (520)
Q Consensus       232 ~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~----~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~  307 (520)
                      .+..+..+++++.|+.. ++..|+.+...  ...+++.+.    +.+..++..++.++.|++.---....+    +   .
T Consensus       161 ~p~n~ml~lR~l~NlF~-~~~g~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~----~---~  230 (304)
T 3ebb_A          161 KPANQLLALRTFCNCFV-GQAGQKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI----E---G  230 (304)
T ss_dssp             CHHHHHHHHHHHHHGGG-SHHHHHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH----H---H
T ss_pred             ChHHHHHHHHHHHHccC-CchhHHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc----h---H
Confidence            45667889999999864 67788877753  234444443    223366666777888887521000000    0   0


Q ss_pred             HHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHH
Q 010019          308 FAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS  383 (520)
Q Consensus       308 i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~  383 (520)
                        ....+..+..+++...|.+.+--++.||++|...+.....+.+.=++...+.-+.+.+..  +. +..|+..|-
T Consensus       231 --~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~--~k-v~~~~~~~~  301 (304)
T 3ebb_A          231 --KAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEP--AK-VSECCRFIL  301 (304)
T ss_dssp             --HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSS--HH-HHHHHHHHH
T ss_pred             --HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCc--hh-HHHHHHHHH
Confidence              011355566666665678888889999999985555555555554555544444443222  23 455555554

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=88.58  E-value=6.3  Score=39.95  Aligned_cols=153  Identities=15%  Similarity=0.150  Sum_probs=94.7

Q ss_pred             hhHHhcCCcHHHHHHHhcC---------CCChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCHHHHHHHHhcCChHHHHH
Q 010019          211 ETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEILSRQRNDSIQS  280 (520)
Q Consensus       211 ~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~-g~i~~Lv~lL~~~~~~~~~~  280 (520)
                      ..|. .+|+..|+++|.+-         ..+.+.+..++++|..++ .+......++.. .++..|...|.+....+...
T Consensus       104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~  181 (383)
T 3eg5_B          104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMID  181 (383)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHH
T ss_pred             HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHHHHHHHHhCCCchHHHHH
Confidence            4554 67888888888531         224577888889998875 455566667755 57888888887766677777


Q ss_pred             HHHHHHHhcCCCC--c-chhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC-hh------hHHHH
Q 010019          281 LYDAIRVLLTPDD--D-QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DE------ICKSV  350 (520)
Q Consensus       281 a~~aL~~Ls~~dd--~-~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~-~e------~~~~i  350 (520)
                      +...|..+|...+  + ....-.+.++.+...+..-..++++.|+...+.+.+..+...+-.+... ++      .+..+
T Consensus       182 aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef  261 (383)
T 3eg5_B          182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL  261 (383)
T ss_dssp             HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            8999999887664  1 2222223444444445567889999988654455544444333333322 22      23344


Q ss_pred             HhcCChHHHHHHHhcc
Q 010019          351 AENGGIDALLRCIDDS  366 (520)
Q Consensus       351 ~~~Ggv~~Ll~lL~~~  366 (520)
                      ...| +..++.-|+..
T Consensus       262 ~~~G-l~~il~~lr~~  276 (383)
T 3eg5_B          262 MRLG-LHQVLQELREI  276 (383)
T ss_dssp             HHTT-HHHHHHHHTTS
T ss_pred             HHCC-hHHHHHHHhcC
Confidence            4555 55566667753

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=87.80  E-value=4.3  Score=46.76  Aligned_cols=150  Identities=11%  Similarity=0.005  Sum_probs=81.3

Q ss_pred             hhHHHHHHHHHHHhccC--hhhHHHHHhcCChHHHHHHHhccCCC-CcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHH
Q 010019          327 SPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQ-GNKTVARICCSLLSKLAGSDSNKSAIIENGGMDK  403 (520)
Q Consensus       327 ~~~~~~a~~aL~~La~~--~e~~~~i~~~Ggv~~Ll~lL~~~~~~-~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~  403 (520)
                      =...+.++++++.++..  ++.-..++ ...++.|+.++...... ....+...+|++|+..+..-......     +++
T Consensus       467 W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-----L~~  540 (1023)
T 4hat_C          467 WHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-----LRT  540 (1023)
T ss_dssp             HHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-----HHH
T ss_pred             HHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-----HHH
Confidence            35678899999999843  22122222 13467788887642111 11234447789998877432111122     444


Q ss_pred             HHHHHhc--cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh------cCcHHHHHHHHHh--CCCCHHHHHHHHHHHHHHh
Q 010019          404 LIVVSAR--FSDDASVLQEVMSIITVLSLRSPENAARAME------AGSGDLAIQAMLK--FPNAQQLQRSSCFMIRNLV  473 (520)
Q Consensus       404 Lv~lL~~--~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~------~G~i~~lv~~L~~--~~~~~~vqk~A~~aL~nL~  473 (520)
                      ++..|-.  +.+++.|++.||++|.+||.   +.+..+..      ...++.+++.+..  ..-+..-...+.-+|..++
T Consensus       541 vl~~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi  617 (1023)
T 4hat_C          541 VILKLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII  617 (1023)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            4443322  14568999999999999996   33334432      1134444433322  1234455566777888887


Q ss_pred             hhC--hhhHHHHHh
Q 010019          474 ARN--PENRKLLLS  485 (520)
Q Consensus       474 ~~~--~e~~~~l~~  485 (520)
                      ...  .+.+..+++
T Consensus       618 ~~~~~~~~~~~~l~  631 (1023)
T 4hat_C          618 SEERSVAERNRLLS  631 (1023)
T ss_dssp             TTCCSHHHHHHHHH
T ss_pred             HhCCCHhhHHHHHH
Confidence            543  333444443

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=86.60  E-value=24  Score=40.32  Aligned_cols=227  Identities=11%  Similarity=0.031  Sum_probs=117.9

Q ss_pred             HHHHHHHhcC---CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhc--C----ChHHHHHHHHHHHHhcC
Q 010019          220 KLLVNILIDG---NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR--Q----RNDSIQSLYDAIRVLLT  290 (520)
Q Consensus       220 ~~Lv~lL~~~---~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~--~----~~~~~~~a~~aL~~Ls~  290 (520)
                      +.++.++++.   ...+.++..++++++..+..-..      ....+++++..+-+  +    +..++..||.++.++|.
T Consensus       493 ~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~  566 (980)
T 3ibv_A          493 QILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK  566 (980)
T ss_dssp             HHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence            3444444421   34688999999999886643221      12457777777765  2    22677789999999986


Q ss_pred             CCCcchhhhhhchHHHHHHHcCCHHHHHHHHhc----C--C--Chh----------------HHHHHHHHHHHhc----c
Q 010019          291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHA----G--L--SSP----------------SLISASIALKAVA----V  342 (520)
Q Consensus       291 ~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~----~--~--~~~----------------~~~~a~~aL~~La----~  342 (520)
                      .-....              .+.++.++..++.    .  +  +.+                -+-...-+++.|.    .
T Consensus       567 ~~~~~L--------------~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~  632 (980)
T 3ibv_A          567 SIKKQV--------------VNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNL  632 (980)
T ss_dssp             HTTTTC--------------SSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCC
T ss_pred             HhhHHh--------------hhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCC
Confidence            433211              1234444444432    1  0  000                1222333333333    2


Q ss_pred             ChhhHHHHHhcCChHHHHHHHhccC----CC-CcHHHHHHHHHHHHHhh-CCCc--h----HHHHHhcCCHHHHHHHHhc
Q 010019          343 NDEICKSVAENGGIDALLRCIDDSG----LQ-GNKTVARICCSLLSKLA-GSDS--N----KSAIIENGGMDKLIVVSAR  410 (520)
Q Consensus       343 ~~e~~~~i~~~Ggv~~Ll~lL~~~~----~~-~~~~v~~~al~aL~~La-~~~~--~----k~~Iv~~g~l~~Lv~lL~~  410 (520)
                      ..+.+....+ ..+++++.-+....    .. .+..-....+.+|+.++ +-++  +    ...+.. ...+.+..+|..
T Consensus       633 ~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~-~~~~~il~~l~~  710 (980)
T 3ibv_A          633 TPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFN-KASDEIFLILDR  710 (980)
T ss_dssp             CHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHH-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHH-HHHHHHHHHHHh
Confidence            3444444433 23455554443221    11 11113346677788887 3221  1    122222 467888888998


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019          411 FSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (520)
Q Consensus       411 ~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~  474 (520)
                      +..+..|++.++.++..+..--...   +  ...++.+++.|-.+....+ .....|.+..++.
T Consensus       711 ~~~~~~irea~~~~~~r~i~~lg~~---~--~p~lp~~i~~ll~~~~~~e-~~~fL~l~~qli~  768 (980)
T 3ibv_A          711 MGFNEDIRGAVRFTSGRIINVVGPD---M--LPKVPQLISILLNSIDMNE-LVDVLSFISQLIH  768 (980)
T ss_dssp             SCCSHHHHHHHHHHHHHHTTTTHHH---H--TTTHHHHHHHHHHHCCTTT-HHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHccHh---H--HHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHH
Confidence            8889999999999999886421111   1  2345555555543212111 2344555555554

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=83.87  E-value=17  Score=36.72  Aligned_cols=149  Identities=13%  Similarity=0.113  Sum_probs=89.5

Q ss_pred             cCCcHHHHHHHhcC---------CCChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCHHHHHHHHhcCChHHHHHHHHHH
Q 010019          216 GGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEILSRQRNDSIQSLYDAI  285 (520)
Q Consensus       216 ~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~aL  285 (520)
                      .+|+..|+.+|.+-         ..+.+.+..++++|..++. +......++.. +++..|...|.+....+...+...|
T Consensus        46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL  124 (386)
T 2bnx_A           46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  124 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            57888888887542         1135677888899988764 45566666655 5788888887765556666788888


Q ss_pred             HHhcCCCCc---chhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChh-------hHHHHHhcCC
Q 010019          286 RVLLTPDDD---QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDE-------ICKSVAENGG  355 (520)
Q Consensus       286 ~~Ls~~dd~---~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e-------~~~~i~~~Gg  355 (520)
                      ..+|...++   ....-.+.++.+...+..-..+|++.++.+.+.+.+..+...+-.|....+       .+..+...| 
T Consensus       125 ~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~G-  203 (386)
T 2bnx_A          125 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-  203 (386)
T ss_dssp             HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-
T ss_pred             HHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-
Confidence            888876541   111112333333344445678899988765445554444333333433222       234455554 


Q ss_pred             hHHHHHHHhcc
Q 010019          356 IDALLRCIDDS  366 (520)
Q Consensus       356 v~~Ll~lL~~~  366 (520)
                      +..++.-|+..
T Consensus       204 L~~il~~Lr~~  214 (386)
T 2bnx_A          204 LHQVLQELREI  214 (386)
T ss_dssp             HHHHHHHHTTC
T ss_pred             hHHHHHHHhcc
Confidence            66667777753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	520
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-08
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	9e-06
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	1e-04
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-04

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 47/387 (12%), Positives = 113/387 (29%), Gaps = 33/387 (8%)

Query: 153 LIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTET 212
           L  L   +    N     +  G+    S+  +       +       +  L    +  E 
Sbjct: 68  LRNLVFRST--TNKLETRRQNGIREAVSLLRRTGN--AEIQKQLTGLLWNLSSTDELKEE 123

Query: 213 FRTGGGPKLLVNILIDG-------------NEDPEILNSGFAVVAASATGNEVVKESYME 259
                 P L   ++I                 DPE+  +    +   ++ +   +     
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183

Query: 260 LKIDELILEILSRQRNDSIQSLYDAIRVL-----LTPDDDQVVASQVYGYARRFAKIGIA 314
             + + ++  +      S          +     L+   D  V ++              
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243

Query: 315 RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS---GLQGN 371
           ++               +    L     N +    +  +  I   L  +  S        
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303

Query: 372 KTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR 431
              A    +    L  S  ++   ++  G+ ++       S ++ V++   S+++ +S R
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQI--ARLLQSGNSDVVRSGASLLSNMS-R 360

Query: 432 SPENAARAMEAGSGDL---AIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLL-SNG 487
            P            ++            N++ +  S+C+ +RNL+A  P+  K    S+ 
Sbjct: 361 HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSM 420

Query: 488 VEKLIRQAKENH-EICKDAATDALRDL 513
           +  +I   + +      +AA   L D+
Sbjct: 421 LNNIINLCRSSASPKAAEAARLLLSDM 447

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 9e-06
 Identities = 28/212 (13%), Positives = 70/212 (33%), Gaps = 22/212 (10%)

Query: 325 LSSPS---LISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCS 380
           LSS         +  ++     ++   + V + GGI  L+  +       N+ V +    
Sbjct: 11  LSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP----NQNVQQAAAG 66

Query: 381 LLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA 439
            L  L   S +NK       G+ + + +  R   +A + +++  ++  LS          
Sbjct: 67  ALRNLVFRSTTNKLETRRQNGIREAVSLLRRT-GNAEIQKQLTGLLWNLSSTDELKEELI 125

Query: 440 MEA------------GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNG 487
            +A                     M +     ++  ++   +RNL + +   + +   +G
Sbjct: 126 ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSG 185

Query: 488 VEKLIRQAKENHEICKDAATDALRDLGLDDYN 519
           +   +    +N          ++ +     +N
Sbjct: 186 LIDSLMAYVQNCVAASRCDDKSVENCMCVLHN 217

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 9/112 (8%)

Query: 295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASI-ALKAVAVNDEICKSVAEN 353
           Q++        RR +  G  +  V     G+    ++     AL  +A +      +   
Sbjct: 404 QLLVRAHQDTQRRTSMGGTQQQFV----EGVRMEEIVEGCTGALHILARDVHNRIVIRGL 459

Query: 354 GGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLI 405
             I   ++ +        + + R+   +L +LA       AI   G    L 
Sbjct: 460 NTIPLFVQLLYS----PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT 507

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	520
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.97
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.97
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.94
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.93
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.8
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.42
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.35
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.3
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.27
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.21
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.17
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.09
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.02
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.01
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.96
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.67
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.61
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.6
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.48
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.33
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.31
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.07
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.74
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.49
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.14
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.87
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	95.13
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	92.98
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	89.3
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	87.63

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-29  Score=267.87  Aligned_cols=345  Identities=13%  Similarity=0.147  Sum_probs=292.4

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Q 010019          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (520)
Q Consensus       124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l  203 (520)
                      +..+...+.+       +|.+.+.+++..+|++.+. +..++...+.++|++|.|+.+|++.  .+..++..|+++|+++
T Consensus        78 l~~~~~~~~s-------~~~~~~~~a~~~~r~~ls~-~~~~~i~~ii~~g~i~~Lv~~l~~~--~~~~iq~~a~~~L~ni  147 (503)
T d1wa5b_          78 LPQMTQQLNS-------DDMQEQLSATVKFRQILSR-EHRPPIDVVIQAGVVPRLVEFMREN--QPEMLQLEAAWALTNI  147 (503)
T ss_dssp             HHHHHHHHSC-------SSHHHHHHHHHHHHHHTCC-SSSCSHHHHHHTTCHHHHHHTTSTT--SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC-------CCHHHHHHHHHHHHHHHhc-CCCchHHHHHHCCChHHHHHHHcCC--CCHHHHHHHHHHHHHH
Confidence            6677777776       7888999999999998865 3555678899999999999999864  3667777788888887


Q ss_pred             hccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHH
Q 010019          204 VHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLY  282 (520)
Q Consensus       204 ~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~  282 (520)
                      +.+. ..+..+...|+++.++.+|.+  ++.+++..++|+|++++..++.+|..+++.|+++.|+.++.....+++++++
T Consensus       148 ~~~~~~~~~~~~~~g~i~~l~~lL~s--~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~  225 (503)
T d1wa5b_         148 ASGTSAQTKVVVDADAVPLFIQLLYT--GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT  225 (503)
T ss_dssp             TTSCHHHHHHHHHTTCHHHHHHHHHH--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCChHHHHHHhcC--CChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHH
Confidence            7543 235667788999999999984  5689999999999999998899999999999999999999987778999999


Q ss_pred             HHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHHHHH
Q 010019          283 DAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLR  361 (520)
Q Consensus       283 ~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~  361 (520)
                      |+|.+|+..+++...         .....+++|.|+.++.. .|.+++.++||+|++|+. +++....+.+.|+++.++.
T Consensus       226 ~~l~nl~~~~~~~~~---------~~~~~~~l~~l~~~l~~-~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~  295 (503)
T d1wa5b_         226 WTLSNLCRGKKPQPD---------WSVVSQALPTLAKLIYS-MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE  295 (503)
T ss_dssp             HHHHHHHCCSSSCCC---------HHHHGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHhcCCccchH---------HHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhh
Confidence            999999987665442         22346889999999975 467889999999999994 5666788999999999999


Q ss_pred             HHhccCCCCcHHHHHHHHHHHHHhhCC-CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 010019          362 CIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM  440 (520)
Q Consensus       362 lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~  440 (520)
                      ++...    +..+...++.+|++++.+ +.....+.+.|+++.+..++.  +.++.+++.++|+|+|++..+++....++
T Consensus       296 ll~~~----~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~i~~~~~~~l~nl~~~~~~~~~~i~  369 (503)
T d1wa5b_         296 LLSHE----STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS--SPKENIKKEACWTISNITAGNTEQIQAVI  369 (503)
T ss_dssp             GGGCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             cccCC----chhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            99852    358999999999999855 455667889999999999998  67899999999999999999999999999


Q ss_pred             hcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh---ChhhHHHHHhCCHHHHHHHHHHh
Q 010019          441 EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR---NPENRKLLLSNGVEKLIRQAKEN  498 (520)
Q Consensus       441 ~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~---~~e~~~~l~~~G~~~lL~~~~~~  498 (520)
                      +.|+++.+++.|..  .+..++++|+|+|.|++..   .++....+++.|+.+.|...+..
T Consensus       370 ~~~~l~~li~~l~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~  428 (503)
T d1wa5b_         370 DANLIPPLVKLLEV--AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI  428 (503)
T ss_dssp             HTTCHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT
T ss_pred             HccccchhHHhccc--CChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcC
Confidence            99999999999976  5789999999999999864   35678889999998888777643

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.3e-29  Score=261.75  Aligned_cols=363  Identities=12%  Similarity=0.136  Sum_probs=298.8

Q ss_pred             HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHH
Q 010019          121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTM  200 (520)
Q Consensus       121 ~~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~L  200 (520)
                      ..+++.|...+.+       +|++.+.+|+..|+++.+. +....+..+.+.|++|.|+++|++.  ++++++..|+++|
T Consensus        12 ~~~i~~lv~~l~s-------~~~~~~~~a~~~l~~l~s~-~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~v~~~a~~~L   81 (434)
T d1q1sc_          12 NWSVEDIVKGINS-------NNLESQLQATQAARKLLSR-EKQPPIDNIIRAGLIPKFVSFLGKT--DCSPIQFESAWAL   81 (434)
T ss_dssp             SCCHHHHHHHHTS-------SCHHHHHHHHHHHHHHHHS-SSCCCHHHHHHTTCHHHHHHHTTCG--GGHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHcC-------CCHHHHHHHHHHHHHHhcC-CCCchHHHHHHCCCHHHHHHHHccC--CCHHHHHHHHHHH
Confidence            3468888888888       8999999999999998764 1333467789999999999999765  3567777778888


Q ss_pred             HHhhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh----
Q 010019          201 ALLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----  275 (520)
Q Consensus       201 a~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~----  275 (520)
                      +.++.+. +.+..+++.|+++.++.+|.  +++.+++..++++|.++|..++..|..+.+.|+++.|+.++..+..    
T Consensus        82 ~~la~~~~~~~~~i~~~~~i~~l~~~L~--~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~  159 (434)
T d1q1sc_          82 TNIASGTSEQTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA  159 (434)
T ss_dssp             HHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSC
T ss_pred             HHHhcCChhhhhHhhhccchhhhhhccc--cCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccch
Confidence            7776543 34677889999999999997  4578999999999999999888899999999999999999987643    


Q ss_pred             -HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhc
Q 010019          276 -DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAEN  353 (520)
Q Consensus       276 -~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~  353 (520)
                       ..++.+++++.+++........         .....++++.|+.++.. .++++..+++++|.+|+. +++....+.+.
T Consensus       160 ~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~l~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~  229 (434)
T d1q1sc_         160 CGYLRNLTWTLSNLCRNKNPAPP---------LDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKK  229 (434)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTCCC---------HHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhcccccch---------hhhhhhHHHHHHHHHhc-cccchhhhHHhhhcccchhhhhhHHHHhhc
Confidence             5667889999999987654331         22345678999998875 467889999999999995 45677788899


Q ss_pred             CChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 010019          354 GGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRS  432 (520)
Q Consensus       354 Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~  432 (520)
                      |+++.++.++...    +..++..++.+|++++. +++.+..+++.|+++.++.+|+  +.++.+++.++++|.+|+..+
T Consensus       230 ~~~~~Lv~ll~~~----~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~  303 (434)
T d1q1sc_         230 GVVPQLVKLLGAT----ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT--NPKTNIQKEATWTMSNITAGR  303 (434)
T ss_dssp             TCHHHHHHHHTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT--CSSHHHHHHHHHHHHHHTTSC
T ss_pred             ccchhcccccccc----hhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhc--ccchhhhHHHHHHHhhhcccc
Confidence            9999999998752    35899999999999985 4567788899999999999998  678999999999999999988


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHhCCHHHHHHHHHHhC-cchHHHHHHHH
Q 010019          433 PENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENRKLLLSNGVEKLIRQAKENH-EICKDAATDAL  510 (520)
Q Consensus       433 ~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~-~~e~~~~l~~~G~~~lL~~~~~~h-~~~~~~a~aAL  510 (520)
                      ++....+.+.|+++.++..+..  .++.+++.|+|+|.|++.. +++....+++.|+.+.|..++... +.....+..+|
T Consensus       304 ~~~~~~i~~~~~i~~li~~l~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l  381 (434)
T d1q1sc_         304 QDQIQQVVNHGLVPFLVGVLSK--ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAI  381 (434)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred             chhHHHHhhhhhHHHHHHHHhc--cChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence            8999999999999999999965  5789999999999999864 678889999999988888776543 34445555565


Q ss_pred             HHc
Q 010019          511 RDL  513 (520)
Q Consensus       511 r~L  513 (520)
                      .+|
T Consensus       382 ~~l  384 (434)
T d1q1sc_         382 SNI  384 (434)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-30  Score=275.85  Aligned_cols=367  Identities=16%  Similarity=0.149  Sum_probs=306.6

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHh-cCcHHHHHHHHhhcccCcHHHHHHHHHHH
Q 010019          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTM  200 (520)
Q Consensus       122 ~~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~-~Gaip~Lv~lL~~~~~~~~~~~~~al~~L  200 (520)
                      .++..|.+.+.+       .|.+.+..|+..|.++++   ....|..+++ .|++|.|+.+|++.  ++.+++..|..+|
T Consensus        17 ~aip~L~~lL~~-------~~~~v~~~A~~~l~~l~~---~~~~~~~~~~~~~~v~~l~~~L~~~--~~~~~~~~a~~~L   84 (529)
T d1jdha_          17 RAIPELTKLLND-------EDQVVVNKAAVMVHQLSK---KEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTL   84 (529)
T ss_dssp             CHHHHHHHHHTC-------SCHHHHHHHHHHHHHHHT---SHHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHh---ccHHHHHHHHhhhHHHHHHHHHcCC--CCHHHHHHHHHHH
Confidence            468888888876       788899999999999997   4555555555 57899999999875  3677888889999


Q ss_pred             HHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHH
Q 010019          201 ALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS  280 (520)
Q Consensus       201 a~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~  280 (520)
                      ..++.+.+.+..+++.||++.|+++|+  +++++++..++++|.++|..++..|..+.+.|++++|+.+|++.+.+++..
T Consensus        85 ~~l~~~~~~~~~i~~~g~i~~Li~lL~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~  162 (529)
T d1jdha_          85 HNLSHHREGLLAIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI  162 (529)
T ss_dssp             HHHTTSHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHH
T ss_pred             HHHhCCchhHHHHHHCCCHHHHHHHhC--CCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHH
Confidence            999877777888999999999999997  467899999999999999988889999999999999999999877789999


Q ss_pred             HHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHH
Q 010019          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALL  360 (520)
Q Consensus       281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll  360 (520)
                      ++++|.+|+..++..         ...+.+.|++++|+.+|+.+++..++..++++|++++.+++++..+++.|+++.|+
T Consensus       163 a~~~L~~l~~~~~~~---------~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~  233 (529)
T d1jdha_         163 TTDCLQILAYGNQES---------KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG  233 (529)
T ss_dssp             HHHHHHHHHTTCHHH---------HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHhhhhhHH---------HHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHH
Confidence            999999999765432         23566889999999999987667788899999999999999999999999999999


Q ss_pred             HHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 010019          361 RCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM  440 (520)
Q Consensus       361 ~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~  440 (520)
                      .++...    +.+++..++++|++++.....+  +...|+++.|++++.  ++++.+++.++++|++|+..+++++..+.
T Consensus       234 ~ll~~~----~~~~~~~a~~~l~~ls~~~~~~--~~~~~~i~~Lv~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~  305 (529)
T d1jdha_         234 LHLTDP----SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVC  305 (529)
T ss_dssp             TTTTSS----CHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHhccc----chhhhhhhhhHHHhccccccch--hhhhhcchhhhhhcc--cccHHHHHHHHHHHHhhccchhHHHHHHH
Confidence            998753    3589999999999998554332  334578999999998  77899999999999999999999999999


Q ss_pred             hcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhCh---hhHHHHHhCCHHHHHHHHHHhCc--chHHHHHHHHHHcCC
Q 010019          441 EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP---ENRKLLLSNGVEKLIRQAKENHE--ICKDAATDALRDLGL  515 (520)
Q Consensus       441 ~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~---e~~~~l~~~G~~~lL~~~~~~h~--~~~~~a~aALr~Lg~  515 (520)
                      +.|+++.++.++...++.+.++..|+++|+|++...+   ..+..+...|..+.|..++....  .....+..+|++|..
T Consensus       306 ~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~  385 (529)
T d1jdha_         306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL  385 (529)
T ss_dssp             HTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred             HhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcch
Confidence            9999999999998777889999999999999975533   34556667777777777664432  234567788999987


Q ss_pred             CCCC
Q 010019          516 DDYN  519 (520)
Q Consensus       516 ~~~n  519 (520)
                      +..|
T Consensus       386 ~~~~  389 (529)
T d1jdha_         386 CPAN  389 (529)
T ss_dssp             SGGG
T ss_pred             hhhh
Confidence            6543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-27  Score=253.63  Aligned_cols=343  Identities=17%  Similarity=0.182  Sum_probs=287.3

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      .+..|...+.+.      ++.+....++..|..+|.   +++++..+++.|++|.|+.+|++.   +++++..|+++|++
T Consensus        60 ~v~~l~~~L~~~------~~~~~~~~a~~~L~~l~~---~~~~~~~i~~~g~i~~Li~lL~~~---~~~v~~~a~~aL~~  127 (529)
T d1jdha_          60 MVSAIVRTMQNT------NDVETARCTAGTLHNLSH---HREGLLAIFKSGGIPALVKMLGSP---VDSVLFYAITTLHN  127 (529)
T ss_dssp             HHHHHHHHHHHC------CCHHHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC------CCHHHHHHHHHHHHHHhC---CchhHHHHHHCCCHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence            466666666542      456777889999999987   788999999999999999999874   78899999999998


Q ss_pred             hhccccc-chhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCCh-HHHHH
Q 010019          203 LVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQS  280 (520)
Q Consensus       203 l~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~  280 (520)
                      ++.+.+. +..+.+.|+++.|+++|+  +++.+++..+++++.+++..++.++..+.+.|+++.|+.+|+.+.. .++..
T Consensus       128 l~~~~~~~~~~~~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~  205 (529)
T d1jdha_         128 LLLHQEGAKMAVRLAGGLQKMVALLN--KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT  205 (529)
T ss_dssp             HHHHCTTHHHHHHHHTHHHHHHHGGG--CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHH
T ss_pred             hhcccchhhhHHHhcCCchHHHHHHH--ccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHH
Confidence            8766543 567789999999999997  4578999999999999998888889999999999999999988754 77788


Q ss_pred             HHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHH
Q 010019          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALL  360 (520)
Q Consensus       281 a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll  360 (520)
                      +++++.+|+.+++++.          .+.+.|++++|+.++... +..++..++++|++++....  ......|+++.|+
T Consensus       206 ~~~~l~~ls~~~~~~~----------~~~~~g~~~~L~~ll~~~-~~~~~~~a~~~l~~ls~~~~--~~~~~~~~i~~Lv  272 (529)
T d1jdha_         206 TSRVLKVLSVCSSNKP----------AIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAAT--KQEGMEGLLGTLV  272 (529)
T ss_dssp             HHHHHHHHTTSTTHHH----------HHHHTTHHHHHHTTTTSS-CHHHHHHHHHHHHHHHTTCT--TCSCCHHHHHHHH
T ss_pred             HHHHHhhhhccccccc----------hhhhhhhhhhHHHHhccc-chhhhhhhhhHHHhcccccc--chhhhhhcchhhh
Confidence            9999999998876654          688899999999999864 56788999999999974332  2344568899999


Q ss_pred             HHHhccCCCCcHHHHHHHHHHHHHhh-CCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHH---HH
Q 010019          361 RCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE---NA  436 (520)
Q Consensus       361 ~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~---~~  436 (520)
                      +++...    +..++..++++|++|+ .+++++..+.+.|+++.++.++...++.+.+++.++++|++|+.+.+.   ..
T Consensus       273 ~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~  348 (529)
T d1jdha_         273 QLLGSD----DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ  348 (529)
T ss_dssp             HHTTCS----CHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHH
T ss_pred             hhcccc----cHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhh
Confidence            998752    3589999999999998 467888899999999999999987778899999999999999975432   45


Q ss_pred             HHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHh
Q 010019          437 ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKEN  498 (520)
Q Consensus       437 ~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~  498 (520)
                      ..+...|+++.++.++.. +++..+++.++++|+|++ .+++++..+.+.|+.+.|..++..
T Consensus       349 ~~i~~~~~l~~L~~ll~~-~~~~~~~~~~~~~l~~l~-~~~~~~~~l~~~g~i~~L~~lL~~  408 (529)
T d1jdha_         349 NAVRLHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLA-LCPANHAPLREQGAIPRLVQLLVR  408 (529)
T ss_dssp             HHHHHTTCHHHHHHTTST-TCCHHHHHHHHHHHHHHT-TSGGGHHHHHHTTHHHHHHHHHHH
T ss_pred             hhHHhcccchhHHHHHhc-cchHHHHHHHHHHHhhcc-hhhhhhhhhhhcccHHHHHHHHhc
Confidence            567789999999999865 466778899999999994 578999999999998888887754

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.4e-24  Score=223.70  Aligned_cols=347  Identities=13%  Similarity=0.121  Sum_probs=281.1

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Q 010019          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (520)
Q Consensus       124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l  203 (520)
                      +..|...+.+.      .+.+.+..++..|..+|+.  ++..+..+.+.|++|.|+.+|++.   +.+++..|+++|+++
T Consensus        58 i~~Lv~lL~~~------~~~~v~~~a~~~L~~la~~--~~~~~~~i~~~~~i~~l~~~L~~~---~~~~~~~a~~~L~nl  126 (434)
T d1q1sc_          58 IPKFVSFLGKT------DCSPIQFESAWALTNIASG--TSEQTKAVVDGGAIPAFISLLASP---HAHISEQAVWALGNI  126 (434)
T ss_dssp             HHHHHHHTTCG------GGHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccC------CCHHHHHHHHHHHHHHhcC--ChhhhhHhhhccchhhhhhccccC---CHHHHHHHHHHHHHH
Confidence            56777777541      4566778899999999986  788899999999999999999874   778888899999988


Q ss_pred             hcccc-cchhHHhcCCcHHHHHHHhcCCC---ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHH
Q 010019          204 VHDVQ-STETFRTGGGPKLLVNILIDGNE---DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQ  279 (520)
Q Consensus       204 ~~~~~-~~~~i~~~ggi~~Lv~lL~~~~~---~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~  279 (520)
                      +.+++ .+..+...|+++.++.+|..+..   .......+++.+.+++.............++++.|+.++.+.+.+++.
T Consensus       127 ~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~  206 (434)
T d1q1sc_         127 AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA  206 (434)
T ss_dssp             HTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             hccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhh
Confidence            86553 35667788999999999976543   235566778889888876554555555668899999999887779999


Q ss_pred             HHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhcCChHH
Q 010019          280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDA  358 (520)
Q Consensus       280 ~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~Ggv~~  358 (520)
                      .++++|.+|+..++...         ..+.+.|+++.|+.+++. .+..++..++.+|.+++. +++.+..+.+.|+++.
T Consensus       207 ~a~~~l~~l~~~~~~~~---------~~~~~~~~~~~Lv~ll~~-~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~  276 (434)
T d1q1sc_         207 DSCWAISYLTDGPNERI---------EMVVKKGVVPQLVKLLGA-TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAV  276 (434)
T ss_dssp             HHHHHHHHHTSSCHHHH---------HHHHTTTCHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGG
T ss_pred             hHHhhhcccchhhhhhH---------HHHhhcccchhccccccc-chhhhhhchhhhhhhHHhhhhHHHHHHHhccccch
Confidence            99999999997654322         345578999999999986 467889999999999985 5677889999999999


Q ss_pred             HHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC-CHHHH
Q 010019          359 LLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR-SPENA  436 (520)
Q Consensus       359 Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~-~~~~~  436 (520)
                      ++.+|+..    +.+++..++++|.+|+. +++.+..+.+.|+++.++.++.  ..++.++..++++|.+++.. +++..
T Consensus       277 l~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~--~~~~~v~~~a~~~l~nl~~~~~~~~~  350 (434)
T d1q1sc_         277 FPSLLTNP----KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS--KADFKTQKEAAWAITNYTSGGTVEQI  350 (434)
T ss_dssp             HHHHTTCS----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHhhccc----chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHh--ccChHHHHHHHHHHHHHHhcCCHHHH
Confidence            99999853    34899999999999985 4566778899999999999998  67899999999999999864 56788


Q ss_pred             HHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh------hChhhHHHHHhCCHHHHHHHHHHhCc
Q 010019          437 ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA------RNPENRKLLLSNGVEKLIRQAKENHE  500 (520)
Q Consensus       437 ~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~------~~~e~~~~l~~~G~~~lL~~~~~~h~  500 (520)
                      ..+.+.|+++.++.++..  ++++++..+.++|.++..      .++..+..+.+.|+.+.|..+ ..|+
T Consensus       351 ~~l~~~~~i~~L~~ll~~--~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L-~~~~  417 (434)
T d1q1sc_         351 VYLVHCGIIEPLMNLLSA--KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHE  417 (434)
T ss_dssp             HHHHHTTCHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHH-HTCS
T ss_pred             HHHHHCCcHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHH-HcCC
Confidence            889999999999999954  689999999999999852      123356677788888888664 5664

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=6.9e-24  Score=224.28  Aligned_cols=321  Identities=11%  Similarity=0.093  Sum_probs=267.3

Q ss_pred             cCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccc--ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 010019          172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV--QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG  249 (520)
Q Consensus       172 ~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~--~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~  249 (520)
                      ...++.++..+.+.   +...+..++..+..++...  +....++++|++|.|+.+|+. ..+.+++..++|+|.++|..
T Consensus        75 ~~~l~~~~~~~~s~---~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~-~~~~~iq~~a~~~L~ni~~~  150 (503)
T d1wa5b_          75 QQELPQMTQQLNSD---DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE-NQPEMLQLEAAWALTNIASG  150 (503)
T ss_dssp             -CCHHHHHHHHSCS---SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTST-TSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcC-CCCHHHHHHHHHHHHHHHcC
Confidence            45688888888764   6677777888887766332  334578899999999999975 35688999999999999988


Q ss_pred             ChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhH
Q 010019          250 NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS  329 (520)
Q Consensus       250 ~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~  329 (520)
                      .+.....+.+.|+++.++.+|.+...+++..++|+|++|+.++.         ++...+.+.|++++|+.++... +..+
T Consensus       151 ~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~---------~~r~~l~~~~~~~~L~~ll~~~-~~~~  220 (503)
T d1wa5b_         151 TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST---------DYRDYVLQCNAMEPILGLFNSN-KPSL  220 (503)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCH---------HHHHHHHHTTCHHHHHHGGGSC-CHHH
T ss_pred             CHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhH---------HHHHHHHhhcccccchhhcccC-CHHH
Confidence            88888889999999999999998877999999999999997642         2234667899999999999864 5678


Q ss_pred             HHHHHHHHHHhccCh-hhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-CchHHHHHhcCCHHHHHHH
Q 010019          330 LISASIALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVV  407 (520)
Q Consensus       330 ~~~a~~aL~~La~~~-e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~g~l~~Lv~l  407 (520)
                      +..++|+|++|+.+. .........|+++.++.++..    .+.+++..++++|.+|+.. ++....+++.|+++.++.+
T Consensus       221 ~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~----~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l  296 (503)
T d1wa5b_         221 IRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS----MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL  296 (503)
T ss_dssp             HHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC----CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHG
T ss_pred             HHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhc
Confidence            899999999999544 334444567889999998875    2358999999999999965 4556778999999999999


Q ss_pred             HhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCC
Q 010019          408 SARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNG  487 (520)
Q Consensus       408 L~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G  487 (520)
                      +.  ++++.++..++.+|.+|+..+++....+.+.|+++.+..++..  .++.+++.++|+|.|++..+++....+++.|
T Consensus       297 l~--~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~--~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~  372 (503)
T d1wa5b_         297 LS--HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS--PKENIKKEACWTISNITAGNTEQIQAVIDAN  372 (503)
T ss_dssp             GG--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             cc--CCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcC--CCHHHHHHHHHHHHHHhhccHHHHHHHHHcc
Confidence            98  6789999999999999999898899999999999999988853  5788999999999999988999999999999


Q ss_pred             HHHHHHHHHHhC-cchHHHHHHHHHHcC
Q 010019          488 VEKLIRQAKENH-EICKDAATDALRDLG  514 (520)
Q Consensus       488 ~~~lL~~~~~~h-~~~~~~a~aALr~Lg  514 (520)
                      +.+.+...+... ...+..|..||.++.
T Consensus       373 ~l~~li~~l~~~~~~v~~~a~~~l~nl~  400 (503)
T d1wa5b_         373 LIPPLVKLLEVAEYKTKKEACWAISNAS  400 (503)
T ss_dssp             CHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             ccchhHHhcccCChhHHHHHHHHHHHHH
Confidence            988887777554 467888888888875

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-24  Score=221.85  Aligned_cols=361  Identities=14%  Similarity=0.150  Sum_probs=272.3

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Q 010019          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (520)
Q Consensus       124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l  203 (520)
                      |..|...+.+       +|++.+..++..|.++|..  ++.+|..+.+.|+||+|+++|++.   +.+++..|+.+|..+
T Consensus         4 ip~lv~~L~~-------~~~~~~~~a~~~l~~l~~~--~~~~~~~i~~~g~i~~Lv~lL~~~---~~~v~~~a~~aL~~L   71 (457)
T d1xm9a1           4 IPKAVQYLSS-------QDEKYQAIGAYYIQHTCFQ--DESAKQQVYQLGGICKLVDLLRSP---NQNVQQAAAGALRNL   71 (457)
T ss_dssp             HHHHHHHHHS-------SCTHHHHHHHHHHHHHTSS--CSSHHHHHHHTTHHHHHHHHTTSS---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCC-------CCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCcHHHHHHHHCCC---CHHHHHHHHHHHHHH
Confidence            5567777777       7899999999999999986  899999999999999999999874   788998899999988


Q ss_pred             hccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHh-----------
Q 010019          204 VHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS-----------  271 (520)
Q Consensus       204 ~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~-----------  271 (520)
                      +.++ +.+..+.+.||++.++.++.+ ..+.+++..+++++.+++.. +..+..+...|+ +.++..+.           
T Consensus        72 ~~~~~~~~~~i~~~g~v~~li~~l~~-~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~  148 (457)
T d1xm9a1          72 VFRSTTNKLETRRQNGIREAVSLLRR-TGNAEIQKQLTGLLWNLSST-DELKEELIADAL-PVLADRVIIPFSGWCDGNS  148 (457)
T ss_dssp             HSSCHHHHHHHHHTTCHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHH-HHHHHHTTHHHHTCC----
T ss_pred             HcCCHHHHHHHHHCCChHHHHHHHhc-cCcHHHHHHHHHHHHHHHhh-hhhHHHHHhccc-HHHHHHHHhhhhhhhcchh
Confidence            7544 446788899999999999874 46788999999999999864 455666665544 44443331           


Q ss_pred             -----cCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHH-HcCCHHHHHHHHhcCC-----ChhHHHHHHHHH---
Q 010019          272 -----RQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGL-----SSPSLISASIAL---  337 (520)
Q Consensus       272 -----~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~-~~g~l~~Lv~lL~~~~-----~~~~~~~a~~aL---  337 (520)
                           .....++..++++|.+++.+++++.          .+. ..|+++.|+.+++...     .......+...+   
T Consensus       149 ~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~----------~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~  218 (457)
T d1xm9a1         149 NMSREVVDPEVFFNATGCLRNLSSADAGRQ----------TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL  218 (457)
T ss_dssp             -----CCCHHHHHHHHHHHHHHTTSHHHHH----------HHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHH
T ss_pred             hhhcccccHHHHHHHHHHHHHHhcCchHHH----------HHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence                 1123778889999999998765433          344 4577888888876421     111111111111   


Q ss_pred             ------------------------------------------------HHhccChhhHHHHHhcCChHHHHHHHhccCCC
Q 010019          338 ------------------------------------------------KAVAVNDEICKSVAENGGIDALLRCIDDSGLQ  369 (520)
Q Consensus       338 ------------------------------------------------~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~  369 (520)
                                                                      ...+........+.+.++++.++.++....  
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~--  296 (457)
T d1xm9a1         219 SYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK--  296 (457)
T ss_dssp             TTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC--
T ss_pred             hhhhHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhccc--
Confidence                                                            111122333444556677888888887642  


Q ss_pred             CcHHHHHHHHHHHHHhhCCCc------hHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010019          370 GNKTVARICCSLLSKLAGSDS------NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG  443 (520)
Q Consensus       370 ~~~~v~~~al~aL~~La~~~~------~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G  443 (520)
                       +..+...+++++.+++.+..      .+..+.+.|+++.|+.+|.  +.++.+++.++++|.+|+. +++++..+.+ +
T Consensus       297 -~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~--~~~~~v~~~a~~~l~~La~-~~~~~~~i~~-~  371 (457)
T d1xm9a1         297 -KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ--SGNSDVVRSGASLLSNMSR-HPLLHRVMGN-Q  371 (457)
T ss_dssp             -CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT--CSCHHHHHHHHHHHHHHHT-SGGGHHHHHH-H
T ss_pred             -chHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhc--CccHHHHHHHHHHHHHHhh-ChhHHHHHHH-h
Confidence             24788999999999986543      3455678899999999998  7789999999999999995 7788777664 6


Q ss_pred             cHHHHHHHHHhCC----CCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCc--chHHHHHHHHHHcCCC
Q 010019          444 SGDLAIQAMLKFP----NAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHE--ICKDAATDALRDLGLD  516 (520)
Q Consensus       444 ~i~~lv~~L~~~~----~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~--~~~~~a~aALr~Lg~~  516 (520)
                      +++.++.+|..+.    .+.+++..||++|+|++..+++++..+++.|+.+.|..++..+.  ..+..|..+|++|..+
T Consensus       372 ~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             THHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             hHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            7888998886542    34679999999999999899999999999999888888887663  4678899999999654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-21  Score=197.58  Aligned_cols=324  Identities=11%  Similarity=0.110  Sum_probs=237.5

Q ss_pred             CcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhccc-ccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 010019          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE  251 (520)
Q Consensus       173 Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e  251 (520)
                      +.||.||++|+++   +++++..|.++|.+++.++ +.+..+++.||+|.|+++|+  +++++++..++++|.+++..++
T Consensus         2 ~~ip~lv~~L~~~---~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~~L~~~~~   76 (457)
T d1xm9a1           2 LTIPKAVQYLSSQ---DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR--SPNQNVQQAAAGALRNLVFRST   76 (457)
T ss_dssp             CCHHHHHHHHHSS---CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSCH
T ss_pred             CCHHHHHHHhCCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCH
Confidence            5799999999985   7899999999999998654 45899999999999999997  4679999999999999998899


Q ss_pred             hhHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHH---------
Q 010019          252 VVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSL---------  321 (520)
Q Consensus       252 ~nr~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL---------  321 (520)
                      .+|..+.+.|+++.|+.++....+ +++..++++|.+|+..+..+.          .+.. .+++.++..+         
T Consensus        77 ~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~----------~~~~-~~~~~l~~~~~~~~~~~~~  145 (457)
T d1xm9a1          77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE----------ELIA-DALPVLADRVIIPFSGWCD  145 (457)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH----------HHHH-HHHHHHHHHTTHHHHTCC-
T ss_pred             HHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHH----------HHHh-cccHHHHHHHHhhhhhhhc
Confidence            999999999999999999987644 778889999999998776543          2222 2344444443         


Q ss_pred             ------hcCCChhHHHHHHHHHHHhccChhhHHHHHh-cCChHHHHHHHhccCCC--CcHHHHHHHH-------------
Q 010019          322 ------HAGLSSPSLISASIALKAVAVNDEICKSVAE-NGGIDALLRCIDDSGLQ--GNKTVARICC-------------  379 (520)
Q Consensus       322 ------~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~-~Ggv~~Ll~lL~~~~~~--~~~~v~~~al-------------  379 (520)
                            ....+..++..++++|++++.+++++..+.. .|+++.++.++......  ........+.             
T Consensus       146 ~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  225 (457)
T d1xm9a1         146 GNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE  225 (457)
T ss_dssp             --------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHH
T ss_pred             chhhhhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHH
Confidence                  2233567888999999999988888777665 45678898887532100  0000111111             


Q ss_pred             --------------------------------------HHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHH
Q 010019          380 --------------------------------------SLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEV  421 (520)
Q Consensus       380 --------------------------------------~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a  421 (520)
                                                            ..+...+........+...++++.++.++.. ..++.+++.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~-~~~~~~~~~~  304 (457)
T d1xm9a1         226 VPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK-SKKDATLEAC  304 (457)
T ss_dssp             SCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH-CCCHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhc-ccchHHHHHH
Confidence                                                  1111222333444445556778889998874 4678999999


Q ss_pred             HHHHHHHhcCCHH-----HHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHH
Q 010019          422 MSIITVLSLRSPE-----NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAK  496 (520)
Q Consensus       422 ~~aL~nLa~~~~~-----~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~  496 (520)
                      ++++.+++.....     ....+.+.|+++.++.+|..  .++.+++.++++|+|| +++++++..+.+.|+.+++. ++
T Consensus       305 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~--~~~~v~~~a~~~l~~L-a~~~~~~~~i~~~~i~~li~-~L  380 (457)
T d1xm9a1         305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS--GNSDVVRSGASLLSNM-SRHPLLHRVMGNQVFPEVTR-LL  380 (457)
T ss_dssp             HHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTC--SCHHHHHHHHHHHHHH-HTSGGGHHHHHHHTHHHHHH-TT
T ss_pred             HHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcC--ccHHHHHHHHHHHHHH-hhChhHHHHHHHhhHHHHHH-HH
Confidence            9999999865432     23445678999999999954  6899999999999999 57889988888877666664 33


Q ss_pred             HhCc-------chHHHHHHHHHHcCCCC
Q 010019          497 ENHE-------ICKDAATDALRDLGLDD  517 (520)
Q Consensus       497 ~~h~-------~~~~~a~aALr~Lg~~~  517 (520)
                      ..+.       +....+..+|++|..++
T Consensus       381 ~~~~~~~~~~~~v~~~a~~~L~~l~~~~  408 (457)
T d1xm9a1         381 TSHTGNTSNSEDILSSACYTVRNLMASQ  408 (457)
T ss_dssp             TSCCSCSTTHHHHHHHHHHHHHHHHTTC
T ss_pred             hccccCcCCcHHHHHHHHHHHHHHhcCC
Confidence            3321       13445788899887554

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.8e-19  Score=172.69  Aligned_cols=204  Identities=15%  Similarity=0.142  Sum_probs=173.4

Q ss_pred             hHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhcc-ChhhHHHHHhc
Q 010019          275 NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAEN  353 (520)
Q Consensus       275 ~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~-~~e~~~~i~~~  353 (520)
                      .+....|+.+|.+|+.+.|          +++.+.+.||+++|+..+-++++++++..++++|++++. ++..+..+++.
T Consensus        31 ~~~~~~Al~~L~~L~~~~d----------~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~  100 (264)
T d1xqra1          31 QQEREGALELLADLCENMD----------NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL  100 (264)
T ss_dssp             HHHHHHHHHHHHHHHTSHH----------HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCHH----------HHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3667779999999997654          355888999999999865555678899999999999996 55677788999


Q ss_pred             CChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 010019          354 GGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRS  432 (520)
Q Consensus       354 Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~  432 (520)
                      |+++.|+.+|....   +..++..++++|++|+. ++.++..+.+.||++.|+.+|+  ++++.+++.++++|++|+..+
T Consensus       101 ~~i~~Lv~lL~~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~--~~~~~~~~~a~~~L~~l~~~~  175 (264)
T d1xqra1         101 GALRKLLRLLDRDA---CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ--QQVQKLKVKSAFLLQNLLVGH  175 (264)
T ss_dssp             THHHHHHHHHHHCS---CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHC
T ss_pred             CchHHHHHHhhcCC---CHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHh--cCchHHHHHHHHHHHHHHhcc
Confidence            99999999998642   34899999999999995 5677888999999999999998  779999999999999999989


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhC--CHHHHHHHH
Q 010019          433 PENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSN--GVEKLIRQA  495 (520)
Q Consensus       433 ~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~--G~~~lL~~~  495 (520)
                      ++++..+.+.|+++.++.+|..  .++.+++.|+++|.+|+..+++....+...  +....+...
T Consensus       176 ~~~~~~~~~~~~v~~L~~lL~~--~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~l~~~~~L~~~  238 (264)
T d1xqra1         176 PEHKGTLCSMGMVQQLVALVRT--EHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR  238 (264)
T ss_dssp             GGGHHHHHHTTHHHHHHHHHTS--CCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHH
Confidence            9999999999999999999954  578899999999999988888888777654  445555544

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.1e-18  Score=166.08  Aligned_cols=196  Identities=14%  Similarity=0.170  Sum_probs=166.9

Q ss_pred             ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHH-HHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH
Q 010019          232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILE-ILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK  310 (520)
Q Consensus       232 ~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~  310 (520)
                      +.+....|+.+|.+++. +.+++..+.+.|++++|+. ++++.+.+++..|+++|++++.++..         ....+.+
T Consensus        30 ~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~---------~~~~~~~   99 (264)
T d1xqra1          30 DQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAA---------IQEQVLG   99 (264)
T ss_dssp             HHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
Confidence            45677789999999984 6778999999999999986 56665668889999999999986532         1235668


Q ss_pred             cCCHHHHHHHHhcCCChhHHHHHHHHHHHhc-cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CC
Q 010019          311 IGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GS  388 (520)
Q Consensus       311 ~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La-~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La-~~  388 (520)
                      .|++|+|+.+|.+.+++.++..++++|++|+ .++.+...+.+.||++.|+.+|.+.    +..++..++++|++|+ ++
T Consensus       100 ~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~----~~~~~~~a~~~L~~l~~~~  175 (264)
T d1xqra1         100 LGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ----VQKLKVKSAFLLQNLLVGH  175 (264)
T ss_dssp             TTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHC
T ss_pred             cCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC----chHHHHHHHHHHHHHHhcc
Confidence            9999999999987667788999999999999 5667788999999999999999863    3589999999999997 67


Q ss_pred             CchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010019          389 DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG  443 (520)
Q Consensus       389 ~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G  443 (520)
                      ++++..+++.|+++.|+.+|+  ++++.+++.++++|.+|+..+++....+...+
T Consensus       176 ~~~~~~~~~~~~v~~L~~lL~--~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~  228 (264)
T d1xqra1         176 PEHKGTLCSMGMVQQLVALVR--TEHSPFHEHVLGALCSLVTDFPQGVRECREPE  228 (264)
T ss_dssp             GGGHHHHHHTTHHHHHHHHHT--SCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGG
T ss_pred             HHHHHHHHHhhhHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence            899999999999999999998  67899999999999999998888877776543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=2.2e-05  Score=79.43  Aligned_cols=319  Identities=15%  Similarity=0.131  Sum_probs=195.6

Q ss_pred             cHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHH---hcCCcH---HHHHHHhcCCCChHHHHHHHHHHHHHh
Q 010019          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR---TGGGPK---LLVNILIDGNEDPEILNSGFAVVAASA  247 (520)
Q Consensus       174 aip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~---~~ggi~---~Lv~lL~~~~~~~~v~~~a~~~L~~~~  247 (520)
                      ++..++.+|+..  ...++....|..+.-++.+++.+..++   .....+   ++..+|.  .++.-++..++..+..++
T Consensus        75 ~~~~~l~lL~~~--sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~--~~d~~~~~~s~~i~~ll~  150 (477)
T d1ho8a_          75 TLIPLIHLLSTS--DNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLK--GDFQTVLISGFNVVSLLV  150 (477)
T ss_dssp             THHHHHHHHHSC--CCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSC--SSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhc--CcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhcc--CchhHHHHHHHHHHHHHH
Confidence            577889999865  356777778888887776654333332   111111   2222222  233345556666666665


Q ss_pred             cCChhhHHHHHhcCCHHHHHHHHhc-CChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHH--HcCCHHHHHHHHhcC
Q 010019          248 TGNEVVKESYMELKIDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA--KIGIARALVHSLHAG  324 (520)
Q Consensus       248 ~~~e~nr~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~--~~g~l~~Lv~lL~~~  324 (520)
                      .....+....-...-...++..|.. ...+.+.-+...|..|...+..|.          .+.  +...+++|++.|+..
T Consensus       151 ~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~----------~fw~~~~~~~~~l~~il~~a  220 (477)
T d1ho8a_         151 QNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRD----------VIWLHEKKFMPTLFKILQRA  220 (477)
T ss_dssp             STTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHH----------HHHTTHHHHHHHHHHHHHHH
T ss_pred             hccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHH----------HHHHcccchHHHHHHHHHHH
Confidence            4322222111111111233333433 333555556777888887665554          332  234567777777641


Q ss_pred             ----------------CChhHHHHHHHHHHHhccChhhHHHHHhcC--ChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010019          325 ----------------LSSPSLISASIALKAVAVNDEICKSVAENG--GIDALLRCIDDSGLQGNKTVARICCSLLSKLA  386 (520)
Q Consensus       325 ----------------~~~~~~~~a~~aL~~La~~~e~~~~i~~~G--gv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La  386 (520)
                                      ....++-.++.++|-|+.+++.+..+.+.+  .|+.++++++..+.+   .+++-++.+|+||.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KE---KvvRv~l~~l~Nll  297 (477)
T d1ho8a_         221 TDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKE---KVSRLCISIILQCC  297 (477)
T ss_dssp             HC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSH---HHHHHHHHHHHHTT
T ss_pred             hcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHh
Confidence                            012456789999999999999888888764  488899999876543   89999999999998


Q ss_pred             CCCc--h----HHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhc---------------------CCH------
Q 010019          387 GSDS--N----KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL---------------------RSP------  433 (520)
Q Consensus       387 ~~~~--~----k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~---------------------~~~------  433 (520)
                      ..+.  +    ...++..++++.+-.+..++-.++++.+.--..--.|-.                     -+|      
T Consensus       298 ~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~  377 (477)
T d1ho8a_         298 STRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNG  377 (477)
T ss_dssp             SSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHH
T ss_pred             hhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChh
Confidence            5432  2    334566677776666666666788876543322111110                     122      


Q ss_pred             ---HHHHHHHhcC--cHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCc
Q 010019          434 ---ENAARAMEAG--SGDLAIQAMLK--------FPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHE  500 (520)
Q Consensus       434 ---~~~~~i~~~G--~i~~lv~~L~~--------~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~  500 (520)
                         +|+..+-+.+  .+..|+++|+.        .++++.+..-||--|..++...|+-+..+-+.|+-..++++| .|+
T Consensus       378 FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm-~h~  456 (477)
T d1ho8a_         378 FWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELL-NHS  456 (477)
T ss_dssp             HHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHT-SCS
T ss_pred             HHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHh-cCC
Confidence               2222222222  36788888863        235788888999999999988999999888889999999988 664


Q ss_pred             chHHHHHHHHH
Q 010019          501 ICKDAATDALR  511 (520)
Q Consensus       501 ~~~~~a~aALr  511 (520)
                       ..++.+.||.
T Consensus       457 -d~~Vr~eAL~  466 (477)
T d1ho8a_         457 -DSRVKYEALK  466 (477)
T ss_dssp             -SHHHHHHHHH
T ss_pred             -CHHHHHHHHH
Confidence             4555555554

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=5.5e-05  Score=78.70  Aligned_cols=297  Identities=11%  Similarity=0.039  Sum_probs=180.3

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Q 010019          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (520)
Q Consensus       124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l  203 (520)
                      |..|.+.+.+       .|......+++.|..++.. -+++ |.   ....+|.|.++++.    +.++...+.+.|+.+
T Consensus        12 i~~l~~~l~~-------~~~~~R~~a~~~l~~ia~~-lg~~-~~---~~~lip~l~~~~~~----~~ev~~~~~~~l~~~   75 (588)
T d1b3ua_          12 IAVLIDELRN-------EDVQLRLNSIKKLSTIALA-LGVE-RT---RSELLPFLTDTIYD----EDEVLLALAEQLGTF   75 (588)
T ss_dssp             HHHHHHHTTC-------SCHHHHHHHHHTHHHHHHH-SCHH-HH---HHTHHHHHHHTCCC----CHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcC-------CCHHHHHHHHHHHHHHHHH-hCcH-hh---HHHHHHHHHHHhcC----cHHHHHHHHHHHHHH
Confidence            4556666766       6788888899999888763 1222 11   23568888887754    345665566666665


Q ss_pred             hcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHH
Q 010019          204 VHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYD  283 (520)
Q Consensus       204 ~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~  283 (520)
                      .....+ +..+ ..-++.+..++.  .++..+...|+.++..++....  ...+ +.-.+|.+..+..+........|+.
T Consensus        76 ~~~~~~-~~~~-~~ll~~l~~l~~--~~~~~Vr~~a~~~l~~i~~~~~--~~~~-~~~l~p~i~~L~~~~~~~~r~~a~~  148 (588)
T d1b3ua_          76 TTLVGG-PEYV-HCLLPPLESLAT--VEETVVRDKAVESLRAISHEHS--PSDL-EAHFVPLVKRLAGGDWFTSRTSACG  148 (588)
T ss_dssp             SGGGTS-GGGG-GGGHHHHHHHTT--SSCHHHHHHHHHHHHHHHTTSC--HHHH-HHTHHHHHHHHHTCSSHHHHHHHGG
T ss_pred             HHHcCC-hhHH-HHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHhCC--HHHH-HHHHHHHHHHHhcccchHHHHHHHH
Confidence            421100 1110 112344444443  4578899999999998875433  2222 2234454445555433355555777


Q ss_pred             HHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC--hhhHHHHHhcCChHHHHH
Q 010019          284 AIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDALLR  361 (520)
Q Consensus       284 aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~--~e~~~~i~~~Ggv~~Ll~  361 (520)
                      .+..+...-+.            ... ...++.+.+++++ .++.+.+.++.++..++..  .+.    .....++.+..
T Consensus       149 ll~~~~~~~~~------------~~~-~~l~~~~~~l~~D-~~~~VR~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~  210 (588)
T d1b3ua_         149 LFSVCYPRVSS------------AVK-AELRQYFRNLCSD-DTPMVRRAAASKLGEFAKVLELDN----VKSEIIPMFSN  210 (588)
T ss_dssp             GHHHHTTTSCH------------HHH-HHHHHHHHHHHTC-SCHHHHHHHHHHHHHHHHTSCHHH----HHHTHHHHHHH
T ss_pred             HHHHHHHHhhH------------HHH-HHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhcHHH----HHHHHHHHHHH
Confidence            67766543221            111 1236777777764 4578889999999998742  222    22233456666


Q ss_pred             HHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Q 010019          362 CIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME  441 (520)
Q Consensus       362 lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~  441 (520)
                      ++.+    ++..+...++.+|..++..-....  ...-.+|.+..+++  ..+..|+..++.+|..++..-   ......
T Consensus       211 l~~d----~~~~vr~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~~~~--D~~~~Vr~~~~~~l~~l~~~~---~~~~~~  279 (588)
T d1b3ua_         211 LASD----EQDSVRLLAVEACVNIAQLLPQED--LEALVMPTLRQAAE--DKSWRVRYMVADKFTELQKAV---GPEITK  279 (588)
T ss_dssp             HHTC----SCHHHHTTHHHHHHHHHHHSCHHH--HHHHTHHHHHHHHT--CSSHHHHHHHHHTHHHHHHHH---CHHHHH
T ss_pred             HhcC----CchhhHHHHHHHHHHhhccCCHHH--HHHHHHHHHHHhcc--cccHHHHHHHHHhHHHHHHHh---hhhhhh
Confidence            6554    235788899999998874322111  11235778888886  568899999999999987411   112223


Q ss_pred             cCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019          442 AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (520)
Q Consensus       442 ~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~  474 (520)
                      ...++.+..++..  .++.++..|+.++..++.
T Consensus       280 ~~l~~~l~~ll~d--~~~~vr~~a~~~l~~~~~  310 (588)
T d1b3ua_         280 TDLVPAFQNLMKD--CEAEVRAAASHKVKEFCE  310 (588)
T ss_dssp             HTHHHHHHHHHTC--SSHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhc--cchHHHHHHHHHHHHHHH
Confidence            3467788887754  578999999999988864

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=3.8e-05  Score=80.03  Aligned_cols=303  Identities=11%  Similarity=0.025  Sum_probs=178.3

Q ss_pred             cCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhhcccc--cchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 010019          172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ--STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG  249 (520)
Q Consensus       172 ~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~--~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~  249 (520)
                      ...+|.+..+++..   +.++...++..+..++..-.  ......-...++.+...+.  ..+..+...++.++..++..
T Consensus       280 ~~l~~~l~~ll~d~---~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~--d~~~~vr~~~~~~l~~~~~~  354 (588)
T d1b3ua_         280 TDLVPAFQNLMKDC---EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS--DANQHVKSALASVIMGLSPI  354 (588)
T ss_dssp             HTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT--CSCHHHHHHHHTTGGGGHHH
T ss_pred             hhhhHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhc--CCChHHHHHHHHHHhhhhhc
Confidence            34677777777763   67777777777776653321  1122222344566666654  34566766666665544321


Q ss_pred             ChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhH
Q 010019          250 NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS  329 (520)
Q Consensus       250 ~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~  329 (520)
                        ..+... ....++.+...++....++...+...+..+...-..           ..+. ...+|.+..++++. +..+
T Consensus       355 --~~~~~~-~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~-----------~~~~-~~ll~~l~~~~~d~-~~~~  418 (588)
T d1b3ua_         355 --LGKDNT-IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-----------RQLS-QSLLPAIVELAEDA-KWRV  418 (588)
T ss_dssp             --HCHHHH-HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-----------HHHH-HHHHHHHHHHHTCS-SHHH
T ss_pred             --cchhHH-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch-----------hhhh-hHHHHHHHHHHhcc-cHHH
Confidence              111111 234678888888876667777766555544321100           0111 23577788887753 4567


Q ss_pred             HHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHH
Q 010019          330 LISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVV  407 (520)
Q Consensus       330 ~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~l  407 (520)
                      ...++.++..++.  ..+.    ......+.++.++.+    ....|...|+.+|+.|+..-.. ... ....++.+.++
T Consensus       419 r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~D----~~~~VR~~A~~~L~~l~~~~~~-~~~-~~~i~~~l~~~  488 (588)
T d1b3ua_         419 RLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVD----HVYAIREAATSNLKKLVEKFGK-EWA-HATIIPKVLAM  488 (588)
T ss_dssp             HHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGC----SSHHHHHHHHHHHHHHHHHHCH-HHH-HHHTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcChHh----HHHHHHHHHHhhccC----CchhHHHHHHHHHHHHHHHhCc-HHH-HHHHHHHHHHH
Confidence            7888888887762  2222    111123445555554    2358999999999999732111 111 12356777777


Q ss_pred             HhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCC
Q 010019          408 SARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNG  487 (520)
Q Consensus       408 L~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G  487 (520)
                      +.  +.+..++..++.++..+....+   ........++.+++++..  ..+.|+..++++|..+....+.   ..+...
T Consensus       489 ~~--~~~~~~R~~~~~~l~~l~~~~~---~~~~~~~ilp~ll~~~~D--~v~nVR~~a~~~l~~i~~~~~~---~~~~~~  558 (588)
T d1b3ua_         489 SG--DPNYLHRMTTLFCINVLSEVCG---QDITTKHMLPTVLRMAGD--PVANVRFNVAKSLQKIGPILDN---STLQSE  558 (588)
T ss_dssp             TT--CSCHHHHHHHHHHHHHHHHHHH---HHHHHHHTHHHHHHGGGC--SCHHHHHHHHHHHHHHGGGSCH---HHHHHH
T ss_pred             hc--CCCHHHHHHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHcCc---HhHHHH
Confidence            65  6678888888888888764211   122334467888887754  4688999999999999543221   223344


Q ss_pred             HHHHHHHHHHhC-cchHHHHHHHHHHcCC
Q 010019          488 VEKLIRQAKENH-EICKDAATDALRDLGL  515 (520)
Q Consensus       488 ~~~lL~~~~~~h-~~~~~~a~aALr~Lg~  515 (520)
                      +.+++..++... ++++..|..||.-|.+
T Consensus       559 i~~~l~~L~~D~d~dVr~~A~~al~~l~~  587 (588)
T d1b3ua_         559 VKPILEKLTQDQDVDVKYFAQEALTVLSL  587 (588)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhc
Confidence            567777654222 3567779999998864

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=0.00014  Score=67.38  Aligned_cols=253  Identities=13%  Similarity=0.054  Sum_probs=160.7

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Q 010019          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (520)
Q Consensus       124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l  203 (520)
                      .+.|...+.+       .|+.....|+..|.....             ..++|.|+.+|++.   +..+...|+.+|..+
T Consensus        21 ~~~L~~~L~d-------~~~~vR~~A~~~L~~~~~-------------~~~~~~l~~~l~d~---~~~vr~~a~~aL~~l   77 (276)
T d1oyza_          21 DDELFRLLDD-------HNSLKRISSARVLQLRGG-------------QDAVRLAIEFCSDK---NYIRRDIGAFILGQI   77 (276)
T ss_dssp             HHHHHHHTTC-------SSHHHHHHHHHHHHHHCC-------------HHHHHHHHHHHTCS---SHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhcC-------CCHHHHHHHHHHHHhhCC-------------HhHHHHHHHHHcCC---CHHHHHHHHHHHHHh
Confidence            4567777766       677777888888876432             13689999999864   788888888888876


Q ss_pred             hcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHH
Q 010019          204 VHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYD  283 (520)
Q Consensus       204 ~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~  283 (520)
                      .......+.     ..+.+...+.+ ..++.+...++.++..++........     ..++.+...+......+...++.
T Consensus        78 ~~~~~~~~~-----~~~~l~~~~l~-d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~~~~vr~~a~~  146 (276)
T d1oyza_          78 KICKKCEDN-----VFNILNNMALN-DKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAF  146 (276)
T ss_dssp             CCCTTTHHH-----HHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             ccccccccc-----hHHHHHHHHhc-CCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCcchHHHHHHHH
Confidence            432211111     13344444432 45788999999999888754332222     24556666666555466666776


Q ss_pred             HHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHH
Q 010019          284 AIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCI  363 (520)
Q Consensus       284 aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL  363 (520)
                      ++....                    ....++.+..++... +..+...+..++.........        .++.++..+
T Consensus       147 ~l~~~~--------------------~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~  197 (276)
T d1oyza_         147 AISVIN--------------------DKATIPLLINLLKDP-NGDVRNWAAFAININKYDNSD--------IRDCFVEML  197 (276)
T ss_dssp             HHHTC-----------------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCCHH--------HHHHHHHHT
T ss_pred             HHhhcc--------------------hHHHHHHHHHhcccc-cchhhhhHHHHHHhhhccccc--------cchhhhhhh
Confidence            666432                    124577888887653 455666666666665533211        122344444


Q ss_pred             hccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010019          364 DDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG  443 (520)
Q Consensus       364 ~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G  443 (520)
                      ..    .+..+...+..+++.+.          ...+++.|++.++    ++.++..++.+|..+..           .+
T Consensus       198 ~~----~~~~~~~~~~~al~~~~----------~~~~~~~L~~~l~----d~~vr~~a~~aL~~ig~-----------~~  248 (276)
T d1oyza_         198 QD----KNEEVRIEAIIGLSYRK----------DKRVLSVLCDELK----KNTVYDDIIEAAGELGD-----------KT  248 (276)
T ss_dssp             TC----SCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHT----SSSCCHHHHHHHHHHCC-----------GG
T ss_pred             hh----hhhhhhhhhccccchhh----------hhhhHHHHHHHhC----ChHHHHHHHHHHHHcCC-----------HH
Confidence            43    23577788888876653          2346888999886    34588899999998752           35


Q ss_pred             cHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010019          444 SGDLAIQAMLKFPNAQQLQRSSCFMI  469 (520)
Q Consensus       444 ~i~~lv~~L~~~~~~~~vqk~A~~aL  469 (520)
                      .++.|..+|..+ ++..|++.|.-+|
T Consensus       249 ~~~~L~~~l~~~-~d~~vr~~A~~~L  273 (276)
T d1oyza_         249 LLPVLDTMLYKF-DDNEIITSAIDKL  273 (276)
T ss_dssp             GHHHHHHHHTTS-SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHccC-CCHHHHHHHHHHH
Confidence            778888888765 4677888877665

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=0.00013  Score=80.05  Aligned_cols=156  Identities=17%  Similarity=0.104  Sum_probs=94.7

Q ss_pred             hHHHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-C-chHHHHHhcCCHHH
Q 010019          328 PSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-D-SNKSAIIENGGMDK  403 (520)
Q Consensus       328 ~~~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~-~-~~k~~Iv~~g~l~~  403 (520)
                      +....++.++..+..  .......+....-++.++.++.+    .++++...++.+++.|+.. + ..+..+-  ..++.
T Consensus       637 ~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~----~~~~vr~~a~~llgdl~~~~~~~~~~~l~--~~~~~  710 (888)
T d1qbkb_         637 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD----KMPEVRQSSFALLGDLTKACFQHVKPCIA--DFMPI  710 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCC----CChHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHH
Confidence            344445555555541  22222333333445556666654    2358999999999988732 2 2211111  13455


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHH
Q 010019          404 LIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLL  483 (520)
Q Consensus       404 Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l  483 (520)
                      ++..|.  .+.++++.+++|++..|+.+..+.....+ ...++.++..++.......+.+++|.+|.-|+..+|+.....
T Consensus       711 l~~~L~--~~~~~v~~~a~~~ig~ia~~~~~~~~py~-~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~  787 (888)
T d1qbkb_         711 LGTNLN--PEFISVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPM  787 (888)
T ss_dssp             HHHTCC--GGGHHHHHHHHHHHHHHHHHTGGGGGGGS-HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred             HHHHhC--cCCHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhh
Confidence            555554  45678999999999999875444322222 135678888886544456688999999999987888876555


Q ss_pred             HhCCHHHHH
Q 010019          484 LSNGVEKLI  492 (520)
Q Consensus       484 ~~~G~~~lL  492 (520)
                      +..-+.+.+
T Consensus       788 l~~~~~~~~  796 (888)
T d1qbkb_         788 LQQFIRPWC  796 (888)
T ss_dssp             GGGTHHHHH
T ss_pred             HHHHHHHHH
Confidence            555444444

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=6.8e-05  Score=82.39  Aligned_cols=318  Identities=11%  Similarity=0.054  Sum_probs=163.8

Q ss_pred             cHHHHHHHHhhc-ccCcHHHHHHHHHHHHHhhcccccchhHHh--cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 010019          174 GVELVCSICYKM-RCGSKRVLDSCLKTMALLVHDVQSTETFRT--GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN  250 (520)
Q Consensus       174 aip~Lv~lL~~~-~~~~~~~~~~al~~La~l~~~~~~~~~i~~--~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~  250 (520)
                      .+|.++.++... ...+......|+.+++++..+-  ...+..  ...++.++..|+  +.++.+...++|+|+.++...
T Consensus       392 il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~--~~~~~~~l~~li~~l~~~l~--d~~~~Vr~~a~~~l~~~~~~~  467 (888)
T d1qbkb_         392 LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGC--MQGMIPYLPELIPHLIQCLS--DKKALVRSITCWTLSRYAHWV  467 (888)
T ss_dssp             SHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTS--HHHHTTTHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhH--HHHhcccchhhhHHHHHhcc--CCCHHHHHHHHHHHHHHHHHh
Confidence            466666665432 1235567777788888776432  111111  124566666665  457889999999998876321


Q ss_pred             h-hhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCc-chhhhhhchHHHHHHHcCCHHHHHHHHhcCCChh
Q 010019          251 E-VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD-QVVASQVYGYARRFAKIGIARALVHSLHAGLSSP  328 (520)
Q Consensus       251 e-~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~-~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~  328 (520)
                      . .....+ -...++.++..+......++..||++|.+++..... -.+      +...     .++.|+..+.... ..
T Consensus       468 ~~~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p------~~~~-----il~~l~~~l~~~~-~~  534 (888)
T d1qbkb_         468 VSQPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP------YLAY-----ILDTLVFAFSKYQ-HK  534 (888)
T ss_dssp             HSSCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGG------GHHH-----HHHHHHHHTTTCC-HH
T ss_pred             hhhhhhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhh------HHHH-----HHHHHHHHHhhhh-HH
Confidence            1 111222 235788888888876668888899999988742111 111      1111     1222333322211 11


Q ss_pred             HHHHHHHHHHHhcc-------ChhhHHH----------------------------HH---hcCCh-------HHHHHHH
Q 010019          329 SLISASIALKAVAV-------NDEICKS----------------------------VA---ENGGI-------DALLRCI  363 (520)
Q Consensus       329 ~~~~a~~aL~~La~-------~~e~~~~----------------------------i~---~~Ggv-------~~Ll~lL  363 (520)
                      ....+..++..++.       .++....                            ++   ..+..       +.++.++
T Consensus       535 ~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l  614 (888)
T d1qbkb_         535 NLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLV  614 (888)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHH
Confidence            11111111111110       0000000                            00   00001       1111111


Q ss_pred             hc-------------cCCCCcHHHHHHHHHHHHHhhC--CCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010019          364 DD-------------SGLQGNKTVARICCSLLSKLAG--SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVL  428 (520)
Q Consensus       364 ~~-------------~~~~~~~~v~~~al~aL~~La~--~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nL  428 (520)
                      ..             ..+..+.++...++.++..++.  .......+.....++.+...++  ..++.+++.+..++..|
T Consensus       615 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~--~~~~~vr~~a~~llgdl  692 (888)
T d1qbkb_         615 QKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ--DKMPEVRQSSFALLGDL  692 (888)
T ss_dssp             HHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHT--CSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhC--CCChHHHHHHHHHHHHH
Confidence            10             0111223566677777777762  2223333444455677888887  66899999999999988


Q ss_pred             hcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhC---cchHHH
Q 010019          429 SLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENH---EICKDA  505 (520)
Q Consensus       429 a~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h---~~~~~~  505 (520)
                      +...+......++ ..++.++..+.  .....+..+|+|++..++.+.++.....+. .+.+.|...+..-   +...+.
T Consensus       693 ~~~~~~~~~~~l~-~~~~~l~~~L~--~~~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~~~~~~v~~n  768 (888)
T d1qbkb_         693 TKACFQHVKPCIA-DFMPILGTNLN--PEFISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLEN  768 (888)
T ss_dssp             HHHCGGGTGGGHH-HHHHHHHHTCC--GGGHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCTTCCHHHHHH
T ss_pred             HHhhhHHHHHHHH-HHHHHHHHHhC--cCCHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCCCccHHHHHH
Confidence            8644443322221 13444555453  246788899999999998655444333332 3445555555321   224455


Q ss_pred             HHHHHHHcC
Q 010019          506 ATDALRDLG  514 (520)
Q Consensus       506 a~aALr~Lg  514 (520)
                      +..||.+||
T Consensus       769 ~~~~lgrl~  777 (888)
T d1qbkb_         769 TAITIGRLG  777 (888)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777887775

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=0.00032  Score=64.72  Aligned_cols=220  Identities=10%  Similarity=-0.019  Sum_probs=130.2

Q ss_pred             CcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchh
Q 010019          218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV  297 (520)
Q Consensus       218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~  297 (520)
                      ..+.|+++|+  ++++.+...|+.+|....  .+         .+++.|+.+++..+..++..|+.+|..+........ 
T Consensus        20 ~~~~L~~~L~--d~~~~vR~~A~~~L~~~~--~~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~-   85 (276)
T d1oyza_          20 NDDELFRLLD--DHNSLKRISSARVLQLRG--GQ---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-   85 (276)
T ss_dssp             CHHHHHHHTT--CSSHHHHHHHHHHHHHHC--CH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH-
T ss_pred             CHHHHHHHhc--CCCHHHHHHHHHHHHhhC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc-
Confidence            3456778887  467899999999987653  21         357899999988777888889999998865432211 


Q ss_pred             hhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHH
Q 010019          298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARI  377 (520)
Q Consensus       298 ~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~  377 (520)
                                    ..++.|...+-+.+++.+...++.+|+.+........    ...++.+...+.+    .+..+...
T Consensus        86 --------------~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~----~~~~~~l~~~~~d----~~~~vr~~  143 (276)
T d1oyza_          86 --------------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS----PKIVEQSQITAFD----KSTNVRRA  143 (276)
T ss_dssp             --------------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHTTC----SCHHHHHH
T ss_pred             --------------chHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh----HHHHHHHHHHhcC----cchHHHHH
Confidence                          1245566666555677888999999998874322111    1122344444433    23577777


Q ss_pred             HHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHH-----------------
Q 010019          378 CCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM-----------------  440 (520)
Q Consensus       378 al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~-----------------  440 (520)
                      ++.+++.+.          +...++.+..++.  ..+..+...+..++..+....+.....+.                 
T Consensus       144 a~~~l~~~~----------~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  211 (276)
T d1oyza_         144 TAFAISVIN----------DKATIPLLINLLK--DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIG  211 (276)
T ss_dssp             HHHHHHTC-------------CCHHHHHHHHT--CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHhhcc----------hHHHHHHHHHhcc--cccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccc
Confidence            777766543          2244566666665  44566666666666555543332221111                 


Q ss_pred             -----hcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHHHHHhCCHHHHHHHHHHhCc
Q 010019          441 -----EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRKLLLSNGVEKLIRQAKENHE  500 (520)
Q Consensus       441 -----~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~~l~~~G~~~lL~~~~~~h~  500 (520)
                           ....++.|++.+..    +.+...|+++|..+.  ++         ++.+.|..++..+.
T Consensus       212 l~~~~~~~~~~~L~~~l~d----~~vr~~a~~aL~~ig--~~---------~~~~~L~~~l~~~~  261 (276)
T d1oyza_         212 LSYRKDKRVLSVLCDELKK----NTVYDDIIEAAGELG--DK---------TLLPVLDTMLYKFD  261 (276)
T ss_dssp             HHHTTCGGGHHHHHHHHTS----SSCCHHHHHHHHHHC--CG---------GGHHHHHHHHTTSS
T ss_pred             cchhhhhhhHHHHHHHhCC----hHHHHHHHHHHHHcC--CH---------HHHHHHHHHHccCC
Confidence                 12246666666642    235667777777662  22         35566666665543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=5.7e-05  Score=85.29  Aligned_cols=349  Identities=13%  Similarity=0.119  Sum_probs=180.1

Q ss_pred             HHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHhh
Q 010019          125 ERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLV  204 (520)
Q Consensus       125 ~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l~  204 (520)
                      ..|-+++.+       .|++...-|+..|....+..  ...-..-.....++.|+++|...   +++++..|++.|+.+.
T Consensus         6 ~~ll~k~~~-------~D~d~R~ma~~dl~~~l~~~--~~~~~~~~~~~i~~~ll~~L~D~---~~~Vq~~A~k~l~~l~   73 (1207)
T d1u6gc_           6 SNLLEKMTS-------SDKDFRFMATNDLMTELQKD--SIKLDDDSERKVVKMILKLLEDK---NGEVQNLAVKCLGPLV   73 (1207)
T ss_dssp             HHHHHHTTC-------SSHHHHHHHHHHHHHHTSSS--CCSCCTTHHHHHHHHHHHHTTCS---SHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCC-------CCHhHHHHHHHHHHHHHhhc--ccccChHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHH
Confidence            344445555       78888888999998877641  11101011123678899988753   7889988888888876


Q ss_pred             cccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-hh--H--HHHHhcCCHHHHHHHHhcCCh-HHH
Q 010019          205 HDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE-VV--K--ESYMELKIDELILEILSRQRN-DSI  278 (520)
Q Consensus       205 ~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e-~n--r--~~i~~~g~i~~Lv~lL~~~~~-~~~  278 (520)
                      ..-.  ...+ ...++.|+..|.+  ++.+....+..+|..+...-. ..  .  ....-...++.+...+....+ .+.
T Consensus        74 ~~~~--~~~~-~~l~~~L~~~l~~--~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~  148 (1207)
T d1u6gc_          74 SKVK--EYQV-ETIVDTLCTNMLS--DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQ  148 (1207)
T ss_dssp             TTSC--HHHH-HHHHHHHHHHTTC--SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred             HhCc--HhhH-HHHHHHHHHHhcC--CchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence            4321  1111 1223444444432  334444444444433321100 00  0  011111234445555544433 555


Q ss_pred             HHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC--hhhHHHHHhcCCh
Q 010019          279 QSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGI  356 (520)
Q Consensus       279 ~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~--~e~~~~i~~~Ggv  356 (520)
                      ..++.+|..+........     ..+.     ...++.|+..|.+ ++..+.+.++.+|+.|+..  ++...     ..+
T Consensus       149 ~~al~~l~~l~~~~g~~l-----~~~~-----~~il~~l~~~l~~-~~~~vR~~A~~~l~~l~~~~~~~~~~-----~~~  212 (1207)
T d1u6gc_         149 LEALDIMADMLSRQGGLL-----VNFH-----PSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGNIVFV-----DLI  212 (1207)
T ss_dssp             HHHHHHHHHHHHHTCSSC-----TTTH-----HHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC----CT-----THH
T ss_pred             HHHHHHHHHHHHHhhHhh-----HHHH-----HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHCCHHHHH-----HHH
Confidence            667777776653211100     0000     1134555555554 3467888899999999742  22111     235


Q ss_pred             HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHh--cCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHH
Q 010019          357 DALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIE--NGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE  434 (520)
Q Consensus       357 ~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~--~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~  434 (520)
                      +.++..+..+...   .+...++.+|+.|+.....+  +..  ...++.++..+.  .+++.+++.++.++..++...++
T Consensus       213 ~~ll~~l~~~~~~---~~~~~~~~~l~~l~~~~~~~--~~~~l~~i~~~l~~~l~--~~~~~~r~~al~~l~~l~~~~~~  285 (1207)
T d1u6gc_         213 EHLLSELSKNDSM---STTRTYIQCIAAISRQAGHR--IGEYLEKIIPLVVKFCN--VDDDELREYCIQAFESFVRRCPK  285 (1207)
T ss_dssp             HHHHHHHHHTCSS---CSCTTHHHHHHHHHHHSSGG--GTTSCTTHHHHHHHHHS--SCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHccCCCH---HHHHHHHHHHHHHHHHcchh--hHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHHHHhChh
Confidence            6677666543222   34455666666665321111  111  245788888887  67788999999999888765443


Q ss_pred             HH----HHHHhc-------------------------CcHH---HHHHHH--HhCCCCHHHHHHHHHHHHHHhhhChhhH
Q 010019          435 NA----ARAMEA-------------------------GSGD---LAIQAM--LKFPNAQQLQRSSCFMIRNLVARNPENR  480 (520)
Q Consensus       435 ~~----~~i~~~-------------------------G~i~---~lv~~L--~~~~~~~~vqk~A~~aL~nL~~~~~e~~  480 (520)
                      ..    ..++..                         ...+   .....+  ........+.+.|+.+|..+....++..
T Consensus       286 ~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l  365 (1207)
T d1u6gc_         286 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML  365 (1207)
T ss_dssp             CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred             hhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence            11    111100                         0000   000000  0011345788889999999987777777


Q ss_pred             HHHHhCCHHHHHHHHHHhCcchHHHHHHHHHHc
Q 010019          481 KLLLSNGVEKLIRQAKENHEICKDAATDALRDL  513 (520)
Q Consensus       481 ~~l~~~G~~~lL~~~~~~h~~~~~~a~aALr~L  513 (520)
                      ..+.+.-+..++......++.++..+..++..+
T Consensus       366 ~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l  398 (1207)
T d1u6gc_         366 PEFYKTVSPALISRFKEREENVKADVFHAYLSL  398 (1207)
T ss_dssp             HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            766665444444333222345566666655544

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.0023  Score=62.63  Aligned_cols=285  Identities=9%  Similarity=-0.001  Sum_probs=149.0

Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Q 010019          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (520)
Q Consensus       124 l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~l  203 (520)
                      +..|...+.+.     ..+......++..+..++..  .......-.-...++.++..+.+.+ .+..+...|++.+..+
T Consensus       129 ~~~l~~~l~~~-----~~~~~~~~~~l~~l~~~~~~--~~~~~~~~~~~~il~~~~~~l~~~~-~~~~v~~~a~~~l~~~  200 (458)
T d1ibrb_         129 IPQLVANVTNP-----NSTEHMKESTLEAIGYICQD--IDPEQLQDKSNEILTAIIQGMRKEE-PSNNVKLAATNALLNS  200 (458)
T ss_dssp             HHHHHHHHHCT-----TCCHHHHHHHHHHHHHHHHH--SCGGGTGGGHHHHHHHHHHHHSTTC-CCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhh-----cchHHHHHHHHHHHHHHHhh--ccchhhhhhHHHHHHHHHHHhcccc-cCHHHHHHHHHHHHHH
Confidence            44555555441     13334444556666665542  1111111112334677777776542 3557788888888777


Q ss_pred             hcccccc--hhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHHHHH
Q 010019          204 VHDVQST--ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL  281 (520)
Q Consensus       204 ~~~~~~~--~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a  281 (520)
                      .......  .........+.+..++.  +.++++...++.++..++......-...+.....+.+...+.+..+++...+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a  278 (458)
T d1ibrb_         201 LEFTKANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG  278 (458)
T ss_dssp             TTTTHHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHH
T ss_pred             HHhhhhhhhhHHHHHHhHhhHHHHhc--CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            6322100  00111112333444443  4578898899999988875433221111222233444555555555777778


Q ss_pred             HHHHHHhcCCCC------------cchhhhhhchHHHHHHHcCCHHHHHHHHhcCC------ChhHHHHHHHHHHHhcc-
Q 010019          282 YDAIRVLLTPDD------------DQVVASQVYGYARRFAKIGIARALVHSLHAGL------SSPSLISASIALKAVAV-  342 (520)
Q Consensus       282 ~~aL~~Ls~~dd------------~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~------~~~~~~~a~~aL~~La~-  342 (520)
                      +..+..++....            ...+........+... ...++.+.+.+....      +..+...+..++..++. 
T Consensus       279 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~  357 (458)
T d1ibrb_         279 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC  357 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHH-HHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHh
Confidence            877777652110            0000000001111222 123455556554321      12355667777777762 


Q ss_pred             ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCC--chHHHHHhcCCHHHHHHHHhccCCCHHHHHH
Q 010019          343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD--SNKSAIIENGGMDKLIVVSARFSDDASVLQE  420 (520)
Q Consensus       343 ~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~--~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~  420 (520)
                      ..+.        .++.++..+.....++++.++..++.+|+.++...  +.....+ ...++.|+..++  .+++.|+..
T Consensus       358 ~~~~--------~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~i~~~l~~~l~--d~~~~VR~~  426 (458)
T d1ibrb_         358 CEDD--------IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMK--DPSVVVRDT  426 (458)
T ss_dssp             TTTT--------HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGG--CSCHHHHHH
T ss_pred             ccHh--------hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH-HHHHHHHHHHhC--CCCHHHHHH
Confidence            1111        13445555544333345789999999999998432  2111122 246788888887  678999999


Q ss_pred             HHHHHHHHhc
Q 010019          421 VMSIITVLSL  430 (520)
Q Consensus       421 a~~aL~nLa~  430 (520)
                      ||++|..++.
T Consensus       427 a~~~l~~i~~  436 (458)
T d1ibrb_         427 AAWTVGRICE  436 (458)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999874

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=0.008  Score=60.23  Aligned_cols=231  Identities=10%  Similarity=0.038  Sum_probs=151.8

Q ss_pred             CCChHHHHHHHHHHHHHhcCChhhHHHHHhc--CCHHHHHHHHhcC-C-------------h---HHHHHHHHHHHHhcC
Q 010019          230 NEDPEILNSGFAVVAASATGNEVVKESYMEL--KIDELILEILSRQ-R-------------N---DSIQSLYDAIRVLLT  290 (520)
Q Consensus       230 ~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~--g~i~~Lv~lL~~~-~-------------~---~~~~~a~~aL~~Ls~  290 (520)
                      +++.+.+..|+.++..+.. .+..|..|++.  ..+++|+++|+.. +             .   ..+=.++-+++-|++
T Consensus       176 ~~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF  254 (477)
T d1ho8a_         176 IEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF  254 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT
T ss_pred             ccccchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHc
Confidence            4567777788888887754 57789998743  4688888888652 0             0   223347778888888


Q ss_pred             CCCcchhhhhhchHHHHHHHc--CCHHHHHHHHhcCCChhHHHHHHHHHHHhccChh------hHHHHHhcCChHHHHHH
Q 010019          291 PDDDQVVASQVYGYARRFAKI--GIARALVHSLHAGLSSPSLISASIALKAVAVNDE------ICKSVAENGGIDALLRC  362 (520)
Q Consensus       291 ~dd~~v~~~~a~~~a~~i~~~--g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e------~~~~i~~~Ggv~~Ll~l  362 (520)
                      +.+.          +..+.+.  +.++.|+++++..+...+.+-++.+|.||.....      ....++..++++ ++..
T Consensus       255 ~~~~----------~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~-~l~~  323 (477)
T d1ho8a_         255 NPVF----------ANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQS  323 (477)
T ss_dssp             SHHH----------HHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHH
T ss_pred             CHHH----------HHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhH-HHHH
Confidence            6532          2244443  3488999999887666677888889999984321      233455555554 4555


Q ss_pred             HhccCCCCcHHHHHHHHHHH-------HHhhCCCchHHHHHh--------------------------cCCHHHHHHHHh
Q 010019          363 IDDSGLQGNKTVARICCSLL-------SKLAGSDSNKSAIIE--------------------------NGGMDKLIVVSA  409 (520)
Q Consensus       363 L~~~~~~~~~~v~~~al~aL-------~~La~~~~~k~~Iv~--------------------------~g~l~~Lv~lL~  409 (520)
                      |.... -.|.++.+..-.+-       ..|++.|+-+..+-.                          ...+..|+++|.
T Consensus       324 L~~r~-~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~  402 (477)
T d1ho8a_         324 LSERK-YSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQ  402 (477)
T ss_dssp             HHSSC-CSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHH
T ss_pred             HhcCC-CCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHh
Confidence            54321 12345544332221       222222333322211                          123788899986


Q ss_pred             c--------cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 010019          410 R--------FSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR  475 (520)
Q Consensus       410 ~--------~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~  475 (520)
                      .        .+.++.+..-||-=|..++...|.-+..+-+.|+=..++++| .| .+++|+++|-.++.-+..+
T Consensus       403 ~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm-~h-~d~~Vr~eAL~avQklm~~  474 (477)
T d1ho8a_         403 AKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELL-NH-SDSRVKYEALKATQAIIGY  474 (477)
T ss_dssp             HHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHT-SC-SSHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHh
Confidence            3        234788888999999999998998888888889988888888 45 5899999999998877544

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.017  Score=61.19  Aligned_cols=326  Identities=10%  Similarity=0.045  Sum_probs=174.2

Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHHHhhcccCcHHHHHHHHHHHHH
Q 010019          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (520)
Q Consensus       123 ~l~~L~~~l~~~~~~~~~~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~lL~~~~~~~~~~~~~al~~La~  202 (520)
                      .+..|.+.+.+.     +........++..|..+|+.  -......-.-...++.++..+.+.+ .+..+...++.++..
T Consensus       129 li~~L~~~l~~~-----~~~~~~~~~~l~~l~~i~~~--~~~~~~~~~~~~il~~i~~~l~~~~-~~~~v~~~a~~~l~~  200 (876)
T d1qgra_         129 LIPQLVANVTNP-----NSTEHMKESTLEAIGYICQD--IDPEQLQDKSNEILTAIIQGMRKEE-PSNNVKLAATNALLN  200 (876)
T ss_dssp             HHHHHHHHHHCT-----TCCHHHHHHHHHHHHHHHHH--SCHHHHGGGHHHHHHHHHHHHSTTC-SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCC-----CCcHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHcCcC-ccHHHHHHHHHHHHH
Confidence            355555555441     12234445677777777763  1111111111345778888776542 355777778888776


Q ss_pred             hhcccccchhHHhcC----CcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHHHHHHhcCChHHH
Q 010019          203 LVHDVQSTETFRTGG----GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSI  278 (520)
Q Consensus       203 l~~~~~~~~~i~~~g----gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~Lv~lL~~~~~~~~  278 (520)
                      ......  ..+....    .++.+...+.  ..++++...++.++..++......-...+.....+.+...+.....++.
T Consensus       201 ~~~~~~--~~~~~~~~~~~i~~~l~~~~~--~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  276 (876)
T d1qgra_         201 SLEFTK--ANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVA  276 (876)
T ss_dssp             HGGGCH--HHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHH
T ss_pred             HHHHhh--hhhhHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            653211  1111011    1233333333  4578888899999888876554433333444455566666666555666


Q ss_pred             HHHHHHHHHhcCCCCcch------------hhhhhchHHHHHHHcCCHHHHHHHHhcCCC------hhHHHHHHHHHHHh
Q 010019          279 QSLYDAIRVLLTPDDDQV------------VASQVYGYARRFAKIGIARALVHSLHAGLS------SPSLISASIALKAV  340 (520)
Q Consensus       279 ~~a~~aL~~Ls~~dd~~v------------~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~------~~~~~~a~~aL~~L  340 (520)
                      ..++..+..++.......            +........+.+ ....++.+...+....+      ..+...+..+|..+
T Consensus       277 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l  355 (876)
T d1qgra_         277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA-LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL  355 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH-HHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHH-HHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHH
Confidence            666655555542110000            000000011111 11234555555543211      13455566666666


Q ss_pred             ccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchH--HHHHhcCCHHHHHHHHhccCCCHHHH
Q 010019          341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK--SAIIENGGMDKLIVVSARFSDDASVL  418 (520)
Q Consensus       341 a~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k--~~Iv~~g~l~~Lv~lL~~~~~~~~v~  418 (520)
                      +..       ....+++.++..+.......+......++.+++.++......  .... ...++.++..+.  ..++.|+
T Consensus       356 ~~~-------~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~l~--d~~~~vr  425 (876)
T d1qgra_         356 ATC-------CEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMK--DPSVVVR  425 (876)
T ss_dssp             HHH-------HGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHT--CSSHHHH
T ss_pred             HHH-------hhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHhhc--CCccHHH
Confidence            521       122345677777766544455678888888888887543222  2222 246788888887  6789999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHH-HhCCCCHHHHHHHHHHHHHHhh
Q 010019          419 QEVMSIITVLSLRSPENAARAMEAGSGDLAIQAM-LKFPNAQQLQRSSCFMIRNLVA  474 (520)
Q Consensus       419 ~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L-~~~~~~~~vqk~A~~aL~nL~~  474 (520)
                      ..+++++..++...+..   ......++.++..+ ..-.+++.++..+||++.+++.
T Consensus       426 ~~a~~~l~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~  479 (876)
T d1qgra_         426 DTAAWTVGRICELLPEA---AINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHHHHHHHHHCGGG---TSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcchh---hhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            99999999988533221   11112233333332 2233578899999999999864

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=0.04  Score=57.94  Aligned_cols=371  Identities=13%  Similarity=0.116  Sum_probs=189.7

Q ss_pred             hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH--hhcCcccCCccccCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCh
Q 010019           63 TISQEAFDEVVKENMEDLGMEPTEALQDAIQTL--SLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSD  140 (520)
Q Consensus        63 ~isQetfDe~V~eni~~~~m~p~eal~~aI~qf--~~qgvdls~i~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~  140 (520)
                      .|+++.... +|+.+-..=-+++.-+|..+.+.  ..-..|++             ...-...+..|...+.+.      
T Consensus        87 ~i~~~~~~~-ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p-------------~~~wpeli~~L~~~~~s~------  146 (861)
T d2bpta1          87 QVSPEAKNQ-IKTNALTALVSIEPRIANAAAQLIAAIADIELP-------------HGAWPELMKIMVDNTGAE------  146 (861)
T ss_dssp             HSCHHHHHH-HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG-------------GTCCHHHHHHHHHHTSTT------
T ss_pred             cCCHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC-------------cCchHHHHHHHHHHhcCC------
Confidence            455555544 34444333346777777776663  11112221             011135677787777652      


Q ss_pred             hhHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCcHHHHHHH---HhhcccCcHHHHHHHHHHHHHhhcccccc--hhHHh
Q 010019          141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSI---CYKMRCGSKRVLDSCLKTMALLVHDVQST--ETFRT  215 (520)
Q Consensus       141 ~d~~~~~~al~~L~~l~~~~~~~~~r~~i~~~Gaip~Lv~l---L~~~~~~~~~~~~~al~~La~l~~~~~~~--~~i~~  215 (520)
                      .+......++..|..+|... ++.....  -....+.|..+   +.+. ..+..+...++..+..+...-...  .....
T Consensus       147 ~~~~~~~~al~~l~~i~e~~-~~~~~~~--~~~~~~il~~i~~~~~~~-~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~  222 (861)
T d2bpta1         147 QPENVKRASLLALGYMCESA-DPQSQAL--VSSSNNILIAIVQGAQST-ETSKAVRLAALNALADSLIFIKNNMEREGER  222 (861)
T ss_dssp             SCHHHHHHHHHHHHHHHHTS-STTSSTT--GGGHHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHGGGCHHHHTSHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHh-hHHHHHH--HHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHhHhHHhhhhh
Confidence            23344456788888888641 1111111  11222333333   3332 235677778888887765322110  00111


Q ss_pred             cCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCHHHH-HHHHhcCChHHHHHHHHHHHHhcCCCCc
Q 010019          216 GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELI-LEILSRQRNDSIQSLYDAIRVLLTPDDD  294 (520)
Q Consensus       216 ~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~g~i~~L-v~lL~~~~~~~~~~a~~aL~~Ls~~dd~  294 (520)
                      ...++.+.+.+.  ..+.++...++.++..++......-...+.. .+..+ ....++..+++...++..+..++.....
T Consensus       223 ~~~~~~l~~~~~--~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~-~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~  299 (861)
T d2bpta1         223 NYLMQVVCEATQ--AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALTIATMKSPNDKVASMTVEFWSTICEEEID  299 (861)
T ss_dssp             HHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence            123455556665  4578888889999888775433322222221 23333 3333333446666677766665532110


Q ss_pred             chhh--------hhhchHHHHHHHcCCHHHHHHHHhcCCC------hhHHHHHHHHHHHhccChhhHHHHHhcCChHHHH
Q 010019          295 QVVA--------SQVYGYARRFAKIGIARALVHSLHAGLS------SPSLISASIALKAVAVNDEICKSVAENGGIDALL  360 (520)
Q Consensus       295 ~v~~--------~~a~~~a~~i~~~g~l~~Lv~lL~~~~~------~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll  360 (520)
                      ....        ...+........ ..++.+...+....+      ......+..+|..++...       ....++.+.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~  371 (861)
T d2bpta1         300 IAYELAQFPQSPLQSYNFALSSIK-DVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC-------GNHILEPVL  371 (861)
T ss_dssp             HHHHHHHCTTCSCCCCCHHHHHHH-HHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHH-------GGGGHHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhc-------chhhhhhhc
Confidence            0000        000111111111 235666666654321      134455566666665221       112345555


Q ss_pred             HHHhccCCCCcHHHHHHHHHHHHHhhCCCch--HHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHH
Q 010019          361 RCIDDSGLQGNKTVARICCSLLSKLAGSDSN--KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR  438 (520)
Q Consensus       361 ~lL~~~~~~~~~~v~~~al~aL~~La~~~~~--k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~  438 (520)
                      ..+.......+......++.+++.++.....  .....+ ..++.++..+.  ..++.|++.+++++..++...+.   .
T Consensus       372 ~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~-~~l~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~---~  445 (861)
T d2bpta1         372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMN--DQSLQVKETTAWCIGRIADSVAE---S  445 (861)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHGG---G
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHH-HHHHHHHHHhc--CcchhhhhHHHHHHHHHHHHhch---h
Confidence            5554443444568888999999998854322  222222 35778888887  67899999999999988742111   1


Q ss_pred             HHhcCcHHHHHHH-HHhCCCCHHHHHHHHHHHHHHhh
Q 010019          439 AMEAGSGDLAIQA-MLKFPNAQQLQRSSCFMIRNLVA  474 (520)
Q Consensus       439 i~~~G~i~~lv~~-L~~~~~~~~vqk~A~~aL~nL~~  474 (520)
                      +......+.++.. +....+++.++..+|+++.++..
T Consensus       446 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~  482 (861)
T d2bpta1         446 IDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVE  482 (861)
T ss_dssp             SCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             hhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHH
Confidence            1112223333332 22234578899999999998864

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.013  Score=56.99  Aligned_cols=257  Identities=11%  Similarity=0.041  Sum_probs=138.4

Q ss_pred             CcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHH-HHH--------
Q 010019          188 GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKE-SYM--------  258 (520)
Q Consensus       188 ~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~-~i~--------  258 (520)
                      +|.+.+..|-+.|..+...+  .+.+     +..+..+|.+...+..+...|+-.+.+....+..... ...        
T Consensus        12 ~d~~~r~~A~~~L~~~~~~~--~~~~-----~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~   84 (458)
T d1ibrb_          12 PDRLELEAAQKFLERAAVEN--LPTF-----LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDA   84 (458)
T ss_dssp             SCHHHHHHHHHHHHHHHHHH--HHHH-----HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCH
T ss_pred             cCHHHHHHHHHHHHHHHhcC--chHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCH
Confidence            47777777777776665332  1333     4567777776555566766777677766544332211 110        


Q ss_pred             --hcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHH---cCCHHHHHHHHhcCC-ChhHHHH
Q 010019          259 --ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK---IGIARALVHSLHAGL-SSPSLIS  332 (520)
Q Consensus       259 --~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~---~g~l~~Lv~lL~~~~-~~~~~~~  332 (520)
                        ...+...+++.+.+.. ..++.++.++..++..+               +..   .+.++.|++.+.+.. +......
T Consensus        85 ~~~~~i~~~ll~~~~~~~-~~~~~~~~~~~~i~~~~---------------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  148 (458)
T d1ibrb_          85 NARREVKNYVLQTLGTET-YRPSSASQCVAGIACAE---------------IPVNQWPELIPQLVANVTNPNSTEHMKES  148 (458)
T ss_dssp             HHHHHHHHHHHHHTTCCC-SSSCSHHHHHHHHHHHH---------------GGGTCCTTHHHHHHHHHHCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCc-HHHHHHHHHHHHHHHHh---------------CCcccCcchhHHHHHHHHhhcchHHHHHH
Confidence              1122333444444332 22223333333322211               111   246788888887654 3455566


Q ss_pred             HHHHHHHhcc-ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchH--HHHHhcCCHHHHHHHHh
Q 010019          333 ASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK--SAIIENGGMDKLIVVSA  409 (520)
Q Consensus       333 a~~aL~~La~-~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k--~~Iv~~g~l~~Lv~lL~  409 (520)
                      ++.+|..+.. .......-.-...++.++..+...  ..+.++...++.++..+.......  .........+.+..++.
T Consensus       149 ~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~--~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  226 (458)
T d1ibrb_         149 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE--EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ  226 (458)
T ss_dssp             HHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhccchhhhhhHHHHHHHHHHHhccc--ccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhc
Confidence            7777777652 111111111112245666666542  234589999999999887542211  11122223455666665


Q ss_pred             ccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010019          410 RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV  473 (520)
Q Consensus       410 ~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~  473 (520)
                        ..++.++..++.+|..++...++.....+.......+...+.  +.+..+...|+..+..++
T Consensus       227 --~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~a~~~l~~i~  286 (458)
T d1ibrb_         227 --CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK--SDIDEVALQGIEFWSNVC  286 (458)
T ss_dssp             --CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH--CSSHHHHHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHH
Confidence              568999999999999998655543322222223344444443  357788888998888775

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.033  Score=58.60  Aligned_cols=257  Identities=12%  Similarity=0.029  Sum_probs=134.5

Q ss_pred             cHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcC-----------------Ch
Q 010019          189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG-----------------NE  251 (520)
Q Consensus       189 ~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~-----------------~e  251 (520)
                      |+.++..|-..|-.+...+  .+.+     +..+++++.+...+..+...|+-.+.+....                 .+
T Consensus        18 d~~~r~~Ae~~L~~~~~~~--~~~~-----~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~   90 (861)
T d2bpta1          18 DQNIRLTSETQLKKLSNDN--FLQF-----AGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSP   90 (861)
T ss_dssp             SHHHHHHHHHHHHHHHHHC--HHHH-----HHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCH
T ss_pred             CHHHHHHHHHHHHHHHhcC--chHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCH
Confidence            5555555555554443221  1111     3445555555444555555555555554332                 22


Q ss_pred             hhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHH
Q 010019          252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI  331 (520)
Q Consensus       252 ~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~  331 (520)
                      +.|..+     -..++..|.+....++..++.++..++..+-+..       .+     ...++.|++.+.+..+...+.
T Consensus        91 ~~~~~i-----k~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~-------~w-----peli~~L~~~~~s~~~~~~~~  153 (861)
T d2bpta1          91 EAKNQI-----KTNALTALVSIEPRIANAAAQLIAAIADIELPHG-------AW-----PELMKIMVDNTGAEQPENVKR  153 (861)
T ss_dssp             HHHHHH-----HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT-------CC-----HHHHHHHHHHTSTTSCHHHHH
T ss_pred             HHHHHH-----HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC-------ch-----HHHHHHHHHHhcCCCcHHHHH
Confidence            333333     2456677766555666667778877764321100       00     013667777776544445566


Q ss_pred             HHHHHHHHhccC-hhhHHHHHhcCChHHHHHHHhcc-CCCCcHHHHHHHHHHHHHhhCCCchH--HHHHhcCCHHHHHHH
Q 010019          332 SASIALKAVAVN-DEICKSVAENGGIDALLRCIDDS-GLQGNKTVARICCSLLSKLAGSDSNK--SAIIENGGMDKLIVV  407 (520)
Q Consensus       332 ~a~~aL~~La~~-~e~~~~i~~~Ggv~~Ll~lL~~~-~~~~~~~v~~~al~aL~~La~~~~~k--~~Iv~~g~l~~Lv~l  407 (520)
                      .++.+|..++.. +.....+. ....+.+..++... .+..+..+...++.+|.++...-...  ........++.+...
T Consensus       154 ~al~~l~~i~e~~~~~~~~~~-~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  232 (861)
T d2bpta1         154 ASLLALGYMCESADPQSQALV-SSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEA  232 (861)
T ss_dssp             HHHHHHHHHHHTSSTTSSTTG-GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHH
Confidence            677888887622 11111111 11112233333211 12234688899999999887432111  111112346677777


Q ss_pred             HhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019          408 SARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (520)
Q Consensus       408 L~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~  474 (520)
                      ++  ..++.++..++.+|..++...++.....+.. .+..+..... ...++.+...++..+..++.
T Consensus       233 ~~--~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~-~l~~l~~~~~-~~~~~~v~~~~~~~l~~l~~  295 (861)
T d2bpta1         233 TQ--AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALTIATM-KSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             HT--CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHHHHHT-TCSSHHHHHHHHHHHHHHHH
T ss_pred             hc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh-cCccHHHHHHHHHHHHHHHH
Confidence            77  6789999999999999986544433222221 1222222222 33577888888888877753

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.064  Score=56.57  Aligned_cols=264  Identities=12%  Similarity=0.027  Sum_probs=148.5

Q ss_pred             HHHHhhcccCcHHHHHHHHHHHHHhhcccccchhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC--------
Q 010019          179 CSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN--------  250 (520)
Q Consensus       179 v~lL~~~~~~~~~~~~~al~~La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~--------  250 (520)
                      +++|...-.+|.+....|-..|..+...+  .+.+     +..|++++.+.+.+..+...|+-.+.+....+        
T Consensus         4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--~~~f-----~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~   76 (876)
T d1qgra_           4 ITILEKTVSPDRLELEAAQKFLERAAVEN--LPTF-----LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY   76 (876)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHHH--HHHH-----HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHhcC--hhHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhh
Confidence            34444332347777777777776654322  1222     46677777766556677777777777755433        


Q ss_pred             --------hhhHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHh
Q 010019          251 --------EVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH  322 (520)
Q Consensus       251 --------e~nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~  322 (520)
                              ++.|..+     -..++..|.+.. ...+.++.++..++..+-+.-       .+     .+.++.|++.+.
T Consensus        77 ~~~~~~i~~~~k~~i-----k~~ll~~l~~~~-~~~~~~a~~i~~i~~~~~p~~-------~W-----peli~~L~~~l~  138 (876)
T d1qgra_          77 QQRWLAIDANARREV-----KNYVLHTLGTET-YRPSSASQCVAGIACAEIPVN-------QW-----PELIPQLVANVT  138 (876)
T ss_dssp             HHHHHTSCHHHHHHH-----HHHHHHHTTTCC-SSSCHHHHHHHHHHHHHGGGT-------CC-----TTHHHHHHHHHH
T ss_pred             hcccccCCHHHHHHH-----HHHHHHHhcCCc-HHHHHHHHHHHHHHHHHCCcc-------cc-----HHHHHHHHHHhc
Confidence                    2223222     235666665533 334445666666553221000       00     145888888887


Q ss_pred             cCCC-hhHHHHHHHHHHHhcc--ChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHH--HHHh
Q 010019          323 AGLS-SPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKS--AIIE  397 (520)
Q Consensus       323 ~~~~-~~~~~~a~~aL~~La~--~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~--~Iv~  397 (520)
                      +... ..++..++.+|..++.  ..+.-.... ...++.++..+...  ..+.++...++.++.++........  ....
T Consensus       139 ~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~-~~il~~i~~~l~~~--~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~  215 (876)
T d1qgra_         139 NPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKE--EPSNNVKLAATNALLNSLEFTKANFDKESER  215 (876)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHSTT--CSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHcCc--CccHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            6442 4556677888888762  222111111 12345666766542  2345788888888887764321111  1111


Q ss_pred             cCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010019          398 NGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA  474 (520)
Q Consensus       398 ~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~  474 (520)
                      .-.++.+...+.  ..++.++..++.+|..++...++.....+.......+...+.  .....+...+...+..++.
T Consensus       216 ~~i~~~l~~~~~--~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         216 HFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK--SDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             HHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHH
Confidence            112445555555  568999999999999998766665544444444555555553  3577888888877777653

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.14  E-value=0.0036  Score=49.84  Aligned_cols=88  Identities=7%  Similarity=0.098  Sum_probs=65.1

Q ss_pred             CChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCchHHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCH
Q 010019          354 GGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSP  433 (520)
Q Consensus       354 Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~nLa~~~~  433 (520)
                      .+++.|+.+|.+    +++.+...++.+|+.+..          .+.++.|+.+|+  .+++.|+..++.+|..+.  ++
T Consensus        22 ~~~~~L~~~l~d----~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~--d~~~~VR~~a~~aL~~i~--~~   83 (111)
T d1te4a_          22 EAFEPLLESLSN----EDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLE--DDSGFVRSGAARSLEQIG--GE   83 (111)
T ss_dssp             TTHHHHHHGGGC----SCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHH--HCCTHHHHHHHHHHHHHC--SH
T ss_pred             HHHHHHHHHHcC----CCHHHHHHHHHHHHhcch----------hhhHHHHHhhhc--cchhHHHHHHHHHHHHhC--cc
Confidence            357788888874    246899999999987642          235789999998  678999999999999875  22


Q ss_pred             HHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010019          434 ENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIR  470 (520)
Q Consensus       434 ~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~  470 (520)
                               +.++.|..++. + .++.|++.|..+|.
T Consensus        84 ---------~~~~~L~~ll~-d-~~~~vr~~A~~aL~  109 (111)
T d1te4a_          84 ---------RVRAAMEKLAE-T-GTGFARKVAVNYLE  109 (111)
T ss_dssp             ---------HHHHHHHHHTT-S-CCTHHHHHHHHHGG
T ss_pred             ---------chHHHHHHHHc-C-CCHHHHHHHHHHHH
Confidence                     24566666664 3 47889888887763

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.87  E-value=0.0064  Score=48.30  Aligned_cols=88  Identities=10%  Similarity=0.101  Sum_probs=66.8

Q ss_pred             CCHHHHHHHHhcCCChhHHHHHHHHHHHhccChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCCch
Q 010019          312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSN  391 (520)
Q Consensus       312 g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~~~  391 (520)
                      .++++|+.+|.+ .++.+...++++|+++..          .+.++.|+.+|.+.    ++.|...++.+|+.+..    
T Consensus        22 ~~~~~L~~~l~d-~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d~----~~~VR~~a~~aL~~i~~----   82 (111)
T d1te4a_          22 EAFEPLLESLSN-EDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDD----SGFVRSGAARSLEQIGG----   82 (111)
T ss_dssp             TTHHHHHHGGGC-SCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHC----CTHHHHHHHHHHHHHCS----
T ss_pred             HHHHHHHHHHcC-CCHHHHHHHHHHHHhcch----------hhhHHHHHhhhccc----hhHHHHHHHHHHHHhCc----
Confidence            468899999875 467888999999887642          12468899999862    23899999999987632    


Q ss_pred             HHHHHhcCCHHHHHHHHhccCCCHHHHHHHHHHHH
Q 010019          392 KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIIT  426 (520)
Q Consensus       392 k~~Iv~~g~l~~Lv~lL~~~~~~~~v~~~a~~aL~  426 (520)
                            .+.++.|..+++  .+++.|++.|+.+|.
T Consensus        83 ------~~~~~~L~~ll~--d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          83 ------ERVRAAMEKLAE--TGTGFARKVAVNYLE  109 (111)
T ss_dssp             ------HHHHHHHHHHTT--SCCTHHHHHHHHHGG
T ss_pred             ------cchHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence                  245778888887  668999999988774

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.096  Score=57.93  Aligned_cols=282  Identities=9%  Similarity=0.041  Sum_probs=142.4

Q ss_pred             HHHHHHHHhhcccCcHHHHHHHHHHHHHhhccccc--chhHHhcCCcHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 010019          175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS--TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV  252 (520)
Q Consensus       175 ip~Lv~lL~~~~~~~~~~~~~al~~La~l~~~~~~--~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~  252 (520)
                      ++.+...+++   .+..+...++..+..+....+.  .+.+  ...++.++..+........+...++..+..+...+..
T Consensus       433 ~~~l~~~l~~---~~~~~r~~~~~~l~~l~~~~~~~l~~~l--~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~  507 (1207)
T d1u6gc_         433 VKALHKQMKE---KSVKTRQCCFNMLTELVNVLPGALTQHI--PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP  507 (1207)
T ss_dssp             HHHHHHHTTC---SCHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCG
T ss_pred             HHHHHHHhcC---CchhHHHHHHHHHHHHHHHcchHHHHhh--HhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccH
Confidence            3344444443   2455555555655554422110  1111  1124455556654445566777788888777665543


Q ss_pred             hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhhhhhchHHHHHHHcCCHHHHHHHHhcCC-ChhHHH
Q 010019          253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLI  331 (520)
Q Consensus       253 nr~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~dd~~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~-~~~~~~  331 (520)
                      ..-.-.-....+.++..+......+...+..++..+...-..... ....+....+.  ..++.++..+.... +.++..
T Consensus       508 ~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~-~~~~~~~~~~~--~l~~~~~~~l~~~~~~~e~~~  584 (1207)
T d1u6gc_         508 QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ-PSSFDATPYIK--DLFTCTIKRLKAADIDQEVKE  584 (1207)
T ss_dssp             GGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSS-CCCCCCHHHHH--HHHHHHHHHHSCSSSCHHHHH
T ss_pred             HHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhcc-chhhhhHHHHH--HHHHHHHHHHHhcccchHHHH
Confidence            322222345777888888765555555555554443321000000 00000111111  13556666666543 456777


Q ss_pred             HHHHHHHHhcc-Chhh-HHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCC---chHHHHHhcCCHHHHHH
Q 010019          332 SASIALKAVAV-NDEI-CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD---SNKSAIIENGGMDKLIV  406 (520)
Q Consensus       332 ~a~~aL~~La~-~~e~-~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La~~~---~~k~~Iv~~g~l~~Lv~  406 (520)
                      .+..++..+.. ..+. ...+.  ..++.++..+..    .  .....++.++..++...   .... +.. ..++.+..
T Consensus       585 ~al~~l~~l~~~~~~~~~~~~~--~~l~~l~~~l~~----~--~~r~~a~~~l~~i~~~~~~~~~~~-~l~-~~~~~l~~  654 (1207)
T d1u6gc_         585 RAISCMGQIICNLGDNLGSDLP--NTLQIFLERLKN----E--ITRLTTVKALTLIAGSPLKIDLRP-VLG-EGVPILAS  654 (1207)
T ss_dssp             HHHHHHHHHHHHTGGGCCTHHH--HHHHHHHHHTTS----S--SHHHHHHHHHHHHTTCSSCCCCHH-HHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhHHHHH--HHHHHHHHHhcc----h--hhHHHHHHHHHHHHHhccchhHHH-HHH-HHHHHHHH
Confidence            77777776652 1111 11110  112333333332    1  35567788888887432   2222 222 35677777


Q ss_pred             HHhccCCCHHHHHHHHHHHHHHhcCCH-----HHHHHHHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhChhhHH
Q 010019          407 VSARFSDDASVLQEVMSIITVLSLRSP-----ENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENRK  481 (520)
Q Consensus       407 lL~~~~~~~~v~~~a~~aL~nLa~~~~-----~~~~~i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL~~~~~e~~~  481 (520)
                      .++  ..+..++..++.+|..+....+     .....+     ++.+..++  ...+..++..+..++..++...++...
T Consensus       655 ~l~--~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~-----l~~l~~ll--~~~d~~v~~~~l~~l~~l~~~~~~~~~  725 (1207)
T d1u6gc_         655 FLR--KNQRALKLGTLSALDILIKNYSDSLTAAMIDAV-----LDELPPLI--SESDMHVSQMAISFLTTLAKVYPSSLS  725 (1207)
T ss_dssp             HTT--SCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHH-----HTTCGGGS--CTTCHHHHHHHHHHHHHHTTSCGGGGG
T ss_pred             hcc--cchHHHHHHHHHHHHHHHHhccccchhHHHhhH-----HHhhcccc--ccccHHHHHHHHHHHHHHHhhcchhhh
Confidence            787  6788999999999988864321     111111     11122222  235677888888888888766665544


Q ss_pred             HH
Q 010019          482 LL  483 (520)
Q Consensus       482 ~l  483 (520)
                      .+
T Consensus       726 ~~  727 (1207)
T d1u6gc_         726 KI  727 (1207)
T ss_dssp             GT
T ss_pred             hH
Confidence            33

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.98  E-value=1.6  Score=41.31  Aligned_cols=149  Identities=11%  Similarity=0.165  Sum_probs=98.4

Q ss_pred             hhHHHHHhcCChHHHHHHHhccC-------CCCcHHHHHHHHHHHHHhhCCCchHHHHH-hcCCHHHHHHHHhccCCCHH
Q 010019          345 EICKSVAENGGIDALLRCIDDSG-------LQGNKTVARICCSLLSKLAGSDSNKSAII-ENGGMDKLIVVSARFSDDAS  416 (520)
Q Consensus       345 e~~~~i~~~Ggv~~Ll~lL~~~~-------~~~~~~v~~~al~aL~~La~~~~~k~~Iv-~~g~l~~Lv~lL~~~~~~~~  416 (520)
                      ...+.+ ..+|+..|+.+|....       ...+......++.+|+.|..+..+...++ ..+++..|+..|.  +..+.
T Consensus        37 sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~--s~~~~  113 (343)
T d2bnxa1          37 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD--PAVPN  113 (343)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCC--TTSHH
T ss_pred             hHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccC--CCchH
Confidence            456666 5678899998885421       11235688899999999998877666654 4567888988887  77899


Q ss_pred             HHHHHHHHHHHHhcCC--HHHHHH----------HHhcCcHHHHHHHHHhCCCCHHHHHHHHHHHHHH-hhhCh------
Q 010019          417 VLQEVMSIITVLSLRS--PENAAR----------AMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL-VARNP------  477 (520)
Q Consensus       417 v~~~a~~aL~nLa~~~--~~~~~~----------i~~~G~i~~lv~~L~~~~~~~~vqk~A~~aL~nL-~~~~~------  477 (520)
                      ++..+.-.|+.+|.-.  ++....          ..+.+-...+++.|+.. ++...+ .+|+.+-|. +...+      
T Consensus       114 tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~ey~-~a~m~lIN~li~~~~dl~~R~  191 (343)
T d2bnxa1         114 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALK-VGCLQLINALITPAEELDFRV  191 (343)
T ss_dssp             HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT-SCHHHH-HHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc-ccHHHH-HHHHHHHHHHHcCcccHHHHH
Confidence            9999999999998532  111222          22233456667666543 455554 445544454 43333      


Q ss_pred             hhHHHHHhCCHHHHHHHHHHh
Q 010019          478 ENRKLLLSNGVEKLIRQAKEN  498 (520)
Q Consensus       478 e~~~~l~~~G~~~lL~~~~~~  498 (520)
                      ..|..|...|+.+++..+...
T Consensus       192 ~lR~E~~~~Gl~~il~~l~~~  212 (343)
T d2bnxa1         192 HIRSELMRLGLHQVLQELREI  212 (343)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTC
T ss_pred             HHHHHHHHCChHHHHHHHHcc
Confidence            236777788999999877543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.30  E-value=2.6  Score=39.67  Aligned_cols=150  Identities=13%  Similarity=0.110  Sum_probs=94.6

Q ss_pred             hcCCcHHHHHHHhcC---C------CChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCHHHHHHHHhcCChHHHHHHHHH
Q 010019          215 TGGGPKLLVNILIDG---N------EDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEILSRQRNDSIQSLYDA  284 (520)
Q Consensus       215 ~~ggi~~Lv~lL~~~---~------~~~~v~~~a~~~L~~~~~~~e~nr~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~a  284 (520)
                      ..+|+..|+++|..-   .      .+...+..++++|..++. +......+++. .++..|+..|.+....+...|...
T Consensus        43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~el  121 (343)
T d2bnxa1          43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL  121 (343)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc-cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHH
Confidence            456888888877431   1      124577788899988865 45555555544 688888888877666777779999


Q ss_pred             HHHhcCCCCc---chhhhhhchHHHHHHHcCCHHHHHHHHhcCCChhHHHHHHHHHHHhccC-hh------hHHHHHhcC
Q 010019          285 IRVLLTPDDD---QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DE------ICKSVAENG  354 (520)
Q Consensus       285 L~~Ls~~dd~---~v~~~~a~~~a~~i~~~g~l~~Lv~lL~~~~~~~~~~~a~~aL~~La~~-~e------~~~~i~~~G  354 (520)
                      |..+|...++   ....-.+.++.....+.+-..++++.|+...+.+.+..+...+-.|... ++      .+..+..+ 
T Consensus       122 L~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~-  200 (343)
T d2bnxa1         122 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRL-  200 (343)
T ss_dssp             HHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT-
T ss_pred             HHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHC-
Confidence            9999865432   1111223344444555677899999998765555555554444444432 22      23445566 


Q ss_pred             ChHHHHHHHhcc
Q 010019          355 GIDALLRCIDDS  366 (520)
Q Consensus       355 gv~~Ll~lL~~~  366 (520)
                      |+..++.-|+..
T Consensus       201 Gl~~il~~l~~~  212 (343)
T d2bnxa1         201 GLHQVLQELREI  212 (343)
T ss_dssp             THHHHHHHHTTC
T ss_pred             ChHHHHHHHHcc
Confidence            466677777764

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=87.63  E-value=3.1  Score=39.01  Aligned_cols=136  Identities=12%  Similarity=0.160  Sum_probs=76.5

Q ss_pred             HHHHHHHHhcC---CChhHHHHHHHHHHHhc----cChhhHHHHHhcCChHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010019          314 ARALVHSLHAG---LSSPSLISASIALKAVA----VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA  386 (520)
Q Consensus       314 l~~Lv~lL~~~---~~~~~~~~a~~aL~~La----~~~e~~~~i~~~Ggv~~Ll~lL~~~~~~~~~~v~~~al~aL~~La  386 (520)
                      +..+.++++..   .++.+...+..++++|.    .+...|.    ...++.+.+.+....+..+.+-...++.+|+|+.
T Consensus       125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g  200 (336)
T d1lsha1         125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG  200 (336)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCc----HHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC
Confidence            44555555431   23455566667776665    2323332    1224555555543222223355567788888874


Q ss_pred             CCCchHHHHHhcCCHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCcHHHHHHHHHhCCCCHHH
Q 010019          387 GSDSNKSAIIENGGMDKLIVVSARF-----SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQL  461 (520)
Q Consensus       387 ~~~~~k~~Iv~~g~l~~Lv~lL~~~-----~~~~~v~~~a~~aL~nLa~~~~~~~~~i~~~G~i~~lv~~L~~~~~~~~v  461 (520)
                       .+         +.++.|...+...     .....++..|+++|..++..+|...+        +.++.++.+...+.++
T Consensus       201 -~p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~Ev  262 (336)
T d1lsha1         201 -QP---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSEL  262 (336)
T ss_dssp             -CG---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHH
T ss_pred             -CH---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHH
Confidence             33         2355666656421     12578999999999999987775443        3344555555566776


Q ss_pred             HHHHHHHHHH
Q 010019          462 QRSSCFMIRN  471 (520)
Q Consensus       462 qk~A~~aL~n  471 (520)
                      .-.|..+|-.
T Consensus       263 RiaA~~~lm~  272 (336)
T d1lsha1         263 RIRSCIVFFE  272 (336)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6556555533