Citrus Sinensis ID: 010029

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520
MHCLKMATAILAFSLFSHLLLPTLLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIRKPPSFKS
ccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccHHHHHHccccccccHHHHHHHHHccccEEEcccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccEEEcccccccccccEEEccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHcccEEccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHcccccEEEEccccccccccEEEEEEcccccHHHHHHHHHHHHHcccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHccEEEEEcHHHHHHHHHHHHHHHHHcccccccccccEEEEEccEcccccccccccccHHHccccccccHHHHHHHHcccEEEEEEcccHHHHcccccccccEEcccEEccccccccEccccccHHHHHHHHcccccEEEEEEcccccHHHHHHcccEEEEcccccEccccEccccccccEEEEEEccHHHHHHHHHHHEccccccHHHcccccccccccHHHHHcccccccEEEEEcHHHHccccccHHHHHHHHHHHHHHHHcccEEEEEcccccccEEEEEEccHHHHHHHccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccEEccccccEEcccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHcccccccccc
MHCLKMATAILAFSLFSHLLLPTLLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEihrlnpllhgvievnpdalsqadkADYERKVKAAgslrglhgipillkdniatkdkmntTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASlsewsnfrsskapsgfsgrggqgknpyvlsadpcgsssgsAISVAANLAAVSlgtetdgsilcpsssnsvvglkptlgltsragvipitprqdsvgpicrTVADAAYVLDAiagfdhydpatraaseyiprggykqflrphglkgkrlgivrnpffnfdegsplaqvFDHHLHTLRQEGALVIdhleigninslnsiandETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLlsaeatdgigKTEKAAILNLERFTRDGFEKLMSTnnldalvtpRSYASTLLavggfpginvpagydsegvpfgicfgglkgtepKLIEIAYGFeqatkirkppsfks
MHCLKMATAILAFSLFSHLLLPTLLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAagslrglhgipillkdniatkDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIIlgkaslsewsnfrsskapsgfsgrggQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLgltsragvipitprqdsvgpICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSaeatdgigkTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYgfeqatkirkppsfks
MHCLKMATAILAfslfshlllptllAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCgsssgsaisvaaNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIRKPPSFKS
**CLKMATAILAFSLFSHLLLPTLLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQ***ADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEW**************************************SVAANLAAVSLGTETDGSILCP***NSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQ************
*******TAILAFSLFSHLLLPTLLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKV*AAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIR*PPS***
MHCLKMATAILAFSLFSHLLLPTLLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWS****************QGKNPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKI********
*HCLKMATAILAFSLFSHLLLPTLLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSS********ANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIR*******
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHCLKMATAILAFSLFSHLLLPTLLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIRKPPSFKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query520 2.2.26 [Sep-21-2011]
Q9URY4583 Putative amidase C869.01 yes no 0.932 0.831 0.382 2e-80
B0JSX3483 Glutamyl-tRNA(Gln) amidot yes no 0.857 0.923 0.335 7e-43
B7KLL5483 Glutamyl-tRNA(Gln) amidot yes no 0.859 0.925 0.331 3e-40
B0C269482 Glutamyl-tRNA(Gln) amidot yes no 0.851 0.919 0.328 4e-38
Q46L72486 Glutamyl-tRNA(Gln) amidot yes no 0.838 0.897 0.320 8e-38
Q3Z6V3486 Glutamyl-tRNA(Gln) amidot yes no 0.851 0.911 0.300 1e-37
A2C1Y1486 Glutamyl-tRNA(Gln) amidot yes no 0.838 0.897 0.318 2e-37
Q3ZYM5486 Glutamyl-tRNA(Gln) amidot yes no 0.855 0.915 0.293 2e-37
B0K3S3488 Glutamyl-tRNA(Gln) amidot yes no 0.857 0.913 0.308 3e-37
Q6AQK1485 Glutamyl-tRNA(Gln) amidot yes no 0.863 0.925 0.290 4e-37
>sp|Q9URY4|YI01_SCHPO Putative amidase C869.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.01 PE=3 SV=1 Back     alignment and function desciption
 Score =  300 bits (767), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 204/534 (38%), Positives = 301/534 (56%), Gaps = 49/534 (9%)

Query: 27  ISAQSNAIHAFP--------IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHG 78
           +   +N+ + FP        + +ATI  LQ   +   LTS  +V  YL    ++NP ++G
Sbjct: 46  VYPDTNSTNIFPMPKCQNITLEDATIDQLQNYMENGILTSTDIVHCYLDRYLQVNPYVNG 105

Query: 79  VIEVNPDALSQADKADYERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLRS 137
           ++++NPD L+ A + D ER   A G +RG LHGIP ++KDN ATKDKM+TTAGSYALL S
Sbjct: 106 ILQLNPDVLTIASELDDER---ANGIIRGPLHGIPFIVKDNFATKDKMDTTAGSYALLGS 162

Query: 138 VVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGS 197
           +VPRDA VV +LR+AGA++ G A+LSEW++ RS+    G+S RGGQ + P+ L+ +P GS
Sbjct: 163 IVPRDAYVVKQLREAGAVLFGHATLSEWADMRSNDYSEGYSARGGQSRCPFNLTVNPGGS 222

Query: 198 SSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVG 257
           SSGSAISVA+N+ A +LGTETDGSI+ P+  N VVGLKPT+GLTSR GVIP +  QD+ G
Sbjct: 223 SSGSAISVASNMIAFALGTETDGSIIDPAMRNGVVGLKPTVGLTSRYGVIPESEHQDTTG 282

Query: 258 PICRTVADAAYVLDAIAGFDHYDPATRAASEYIPR-GGYKQFL-RPHGLKGKRLGIVRNP 315
           PI RTV DA YV  ++ G D  D  T   +   P  G Y +FL     L+G R G+   P
Sbjct: 283 PIARTVRDAVYVFQSMWGIDENDIYTLNQTGKTPEDGDYMKFLSNKTSLEGARFGL---P 339

Query: 316 FFNFDEGSPLAQVFDHHLHTLRQ---EGALVIDHLEIGNIN---------SLNSIANDET 363
           +    + +   ++ D  L  ++Q    GA+V ++    N++          L S+   E 
Sbjct: 340 WKRLWQNAKADEI-DRLLEVVKQIEEAGAIVYNNTNFYNLDVISNDGWNWELGSVNESEY 398

Query: 364 TAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIK-------EYGQDLLLSA 416
           T +  +F   I +YL E+  + + SL +++ +NNK+   E  K         GQD  L++
Sbjct: 399 TVVKVDFYNNIKSYLSEVKNTEIHSLEDIVEYNNKYMGTEGGKPNIVPAFSSGQDGFLAS 458

Query: 417 EATDGI-GKTEKAAILNLERFTRD-GFEKLMS-----TNN---LDALVTPRSYASTL--L 464
               G+  +T   A+  + R ++D G +  ++     TN+   L+ L+ P   + T    
Sbjct: 459 LEWGGVKNETYWQAVEYVRRTSQDEGIDYALNYTDPKTNDSFILNGLLVPSGTSITYQQA 518

Query: 465 AVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIRKPPSF 518
           A  G+P I +P G  + G PFG+        EP+LI+     E   + +  P F
Sbjct: 519 AKAGYPMITLPIGVKTNGRPFGLGIMHSAWQEPQLIKYGSAIEDLLQYKAKPKF 572

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 4
>sp|B0JSX3|GATA_MICAN Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Microcystis aeruginosa (strain NIES-843) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B7KLL5|GATA_CYAP7 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 7424) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B0C269|GATA_ACAM1 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acaryochloris marina (strain MBIC 11017) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q46L72|GATA_PROMT Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain NATL2A) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q3Z6V3|GATA_DEHE1 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides ethenogenes (strain 195) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|A2C1Y1|GATA_PROM1 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain NATL1A) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q3ZYM5|GATA_DEHSC Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain CBDB1) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B0K3S3|GATA_THEPX Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter sp. (strain X514) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q6AQK1|GATA_DESPS Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=gatA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query520
224078151510 predicted protein [Populus trichocarpa] 0.936 0.954 0.750 0.0
359474857514 PREDICTED: putative amidase C869.01-like 0.932 0.943 0.761 0.0
255574730510 amidase, putative [Ricinus communis] gi| 0.967 0.986 0.720 0.0
147861793514 hypothetical protein VITISV_016638 [Viti 0.932 0.943 0.757 0.0
359475039509 PREDICTED: putative amidase C869.01-like 0.925 0.944 0.760 0.0
225427948515 PREDICTED: putative amidase C869.01-like 0.925 0.933 0.747 0.0
359474863506 PREDICTED: LOW QUALITY PROTEIN: putative 0.917 0.942 0.755 0.0
224105219522 predicted protein [Populus trichocarpa] 0.942 0.938 0.724 0.0
224078139516 predicted protein [Populus trichocarpa] 0.967 0.974 0.694 0.0
449510428518 PREDICTED: putative amidase C869.01-like 0.975 0.978 0.688 0.0
>gi|224078151|ref|XP_002305495.1| predicted protein [Populus trichocarpa] gi|222848459|gb|EEE86006.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/489 (75%), Positives = 428/489 (87%), Gaps = 2/489 (0%)

Query: 33  AIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADK 92
           + HAF IREA+I DLQLAFKQ KLTSRQLVEFY+GEIH LN +L GVIE+NPDAL QAD+
Sbjct: 23  SCHAFSIREASISDLQLAFKQKKLTSRQLVEFYVGEIHGLNSVLKGVIEINPDALYQADR 82

Query: 93  ADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKA 152
           ADYER+V+A G+L GLHGIPILLKDNIATKDK+NTTAGS+ALLRSVVPRDAGVV KLRK+
Sbjct: 83  ADYERRVRAPGALVGLHGIPILLKDNIATKDKLNTTAGSFALLRSVVPRDAGVVAKLRKS 142

Query: 153 GAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAV 212
           GAIILGKASLSEW+ FRS  AP+GFS RGGQGKNPYVLS DPCGSSSGSAISVAAN  AV
Sbjct: 143 GAIILGKASLSEWAAFRSLNAPNGFSARGGQGKNPYVLSDDPCGSSSGSAISVAANFVAV 202

Query: 213 SLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDA 272
           SLGTETDGSILCPS++NSVVG+KPT+GLTSRAGVIPI+PRQD+VGPICRTV+DA  VLDA
Sbjct: 203 SLGTETDGSILCPSNANSVVGIKPTVGLTSRAGVIPISPRQDTVGPICRTVSDAVIVLDA 262

Query: 273 IAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHH 332
           I G D+ D AT+ AS+YIP GGYKQFL+P+GLKGKRLGIVRNPF  F   +  +Q F++H
Sbjct: 263 IVGVDYNDGATQEASKYIPHGGYKQFLKPYGLKGKRLGIVRNPFLGFASKAE-SQAFEYH 321

Query: 333 LHTLRQEGALVIDHLEIGNINS-LNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAE 391
           L TLRQ G++++DHLEI NIN+ LNS  + E  A+LAEFK+++N YLK+LV SPVR+LA+
Sbjct: 322 LQTLRQGGSVIVDHLEIANINAILNSTGSGEAIALLAEFKISLNTYLKDLVASPVRTLAD 381

Query: 392 VIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLD 451
           VIAFN KF+DLEKI E+GQD+ L A+AT+GIGK EKAA++NLE+ TRDGF+KLM    LD
Sbjct: 382 VIAFNQKFADLEKINEFGQDIFLLAQATNGIGKVEKAALINLEKLTRDGFQKLMRYYKLD 441

Query: 452 ALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATK 511
           ALVTP +  + +LA+GGFPGINVPAGYD +GVPFGI FGGLKGTEPKLI+IA+GFEQATK
Sbjct: 442 ALVTPGAGFAPVLAIGGFPGINVPAGYDDKGVPFGINFGGLKGTEPKLIQIAFGFEQATK 501

Query: 512 IRKPPSFKS 520
           IRKPP+FK+
Sbjct: 502 IRKPPTFKA 510

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359474857|ref|XP_002277463.2| PREDICTED: putative amidase C869.01-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255574730|ref|XP_002528273.1| amidase, putative [Ricinus communis] gi|223532310|gb|EEF34111.1| amidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147861793|emb|CAN80909.1| hypothetical protein VITISV_016638 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475039|ref|XP_003631572.1| PREDICTED: putative amidase C869.01-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225427948|ref|XP_002276506.1| PREDICTED: putative amidase C869.01-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359474863|ref|XP_003631544.1| PREDICTED: LOW QUALITY PROTEIN: putative amidase C869.01-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224105219|ref|XP_002313731.1| predicted protein [Populus trichocarpa] gi|222850139|gb|EEE87686.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224078139|ref|XP_002305493.1| predicted protein [Populus trichocarpa] gi|222848457|gb|EEE86004.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449510428|ref|XP_004163661.1| PREDICTED: putative amidase C869.01-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query520
TAIR|locus:2116890466 AT4G34880 "AT4G34880" [Arabido 0.542 0.605 0.600 2.5e-136
UNIPROTKB|Q81RH4491 BAS1925 "Amidase family protei 0.896 0.949 0.394 2.2e-80
TIGR_CMR|BA_2072491 BA_2072 "amidase family protei 0.896 0.949 0.394 2.2e-80
POMBASE|SPAC869.01583 SPAC869.01 "amidase (predicted 0.688 0.614 0.410 1.1e-74
UNIPROTKB|Q81RW6536 BAS1782 "Amidase family protei 0.909 0.882 0.356 7.5e-73
TIGR_CMR|BA_1921536 BA_1921 "amidase family protei 0.909 0.882 0.356 7.5e-73
UNIPROTKB|G4MQU3555 MGG_04756 "Glutamyl-tRNA(Gln) 0.876 0.821 0.412 3.3e-70
UNIPROTKB|G4MP85559 MGG_02188 "Glutamyl-tRNA(Gln) 0.838 0.779 0.352 6.8e-67
UNIPROTKB|Q0C2V5506 HNE_1220 "Amidase family prote 0.486 0.5 0.44 6.1e-66
UNIPROTKB|Q2KG62566 MGCH7_ch7g473 "Putative unchar 0.857 0.787 0.296 1.4e-41
TAIR|locus:2116890 AT4G34880 "AT4G34880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 893 (319.4 bits), Expect = 2.5e-136, Sum P(2) = 2.5e-136
 Identities = 176/293 (60%), Positives = 228/293 (77%)

Query:   227 SSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAA 286
             S NSVVG+KP++GLTSRAGV+PI+ RQDS+GPICRTV+DA ++LDAI G+D  D AT+ A
Sbjct:   182 SQNSVVGIKPSVGLTSRAGVVPISLRQDSIGPICRTVSDAVHLLDAIVGYDPLDEATKTA 241

Query:   287 SEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDH 346
             SE+IP GGYKQFL   GLKGKRLGIV             + + DHH+ TLR+EGA+VI++
Sbjct:   242 SEFIPEGGYKQFLTTSGLKGKRLGIVMKH----------SSLLDHHIKTLRREGAIVINN 291

Query:   347 LEIGNINSL-NSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKI 405
             L I NI  +     + E  A+LAEFK+++NAYLKELV SPVRSLA+VIA+N +F++ EK+
Sbjct:   292 LTIPNIEVIVGGTDSGEEIALLAEFKMSLNAYLKELVKSPVRSLADVIAYNEEFAEQEKV 351

Query:   406 KEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYASTLLA 465
             KE+GQ++ L+AEAT G+G+ EK A+  ++  +R+G EKL+  N LDA+VT  S  S++LA
Sbjct:   352 KEWGQEVFLTAEATSGMGEKEKTALQKMKELSRNGIEKLIEENKLDAIVTLGSDLSSVLA 411

Query:   466 VGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIRKPPSF 518
             +GG+PGINVPAGYDS GVP+GI FGGL+ +EPKLIEIA+ FEQAT IRKPP F
Sbjct:   412 IGGYPGINVPAGYDSGGVPYGISFGGLRFSEPKLIEIAFAFEQATLIRKPPKF 464
GO:0004040 "amidase activity" evidence=ISS
GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA
UNIPROTKB|Q81RH4 BAS1925 "Amidase family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2072 BA_2072 "amidase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
POMBASE|SPAC869.01 SPAC869.01 "amidase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q81RW6 BAS1782 "Amidase family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1921 BA_1921 "amidase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|G4MQU3 MGG_04756 "Glutamyl-tRNA(Gln) amidotransferase subunit A" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|G4MP85 MGG_02188 "Glutamyl-tRNA(Gln) amidotransferase subunit A" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C2V5 HNE_1220 "Amidase family protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KG62 MGCH7_ch7g473 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B9LZ18GATA_GEOSF6, ., 3, ., 5, ., -0.31360.85190.9134yesno
A5GTM0GATA_SYNR36, ., 3, ., 5, ., -0.31090.84030.9010yesno
Q5N0K5GATA_SYNP66, ., 3, ., 5, ., -0.31250.84230.9144yesno
A0LP22GATA_SYNFM6, ., 3, ., 5, ., -0.32790.85960.9197yesno
A9B9W7GATA_PROM46, ., 3, ., 5, ., -0.31060.85570.9137yesno
A5GKM7GATA_SYNPW6, ., 3, ., 5, ., -0.30810.85190.9096yesno
B2IYD7GATA_NOSP76, ., 3, ., 5, ., -0.31110.85570.9156yesno
B0K3S3GATA_THEPX6, ., 3, ., 5, ., -0.30810.85760.9139yesno
B0TDK7GATA_HELMI6, ., 3, ., 5, ., -0.3040.84230.8993yesno
Q8YY02GATA_NOSS16, ., 3, ., 5, ., -0.32070.84420.9032yesno
Q7U7F4GATA_SYNPX6, ., 3, ., 5, ., -0.30730.85190.9115yesno
Q3AKH0GATA_SYNSC6, ., 3, ., 5, ., -0.30230.85380.9042yesno
Q31LC2GATA_SYNE76, ., 3, ., 5, ., -0.31250.84230.9144yesno
B0C269GATA_ACAM16, ., 3, ., 5, ., -0.32800.85190.9190yesno
B7KLL5GATA_CYAP76, ., 3, ., 5, ., -0.33130.85960.9254yesno
B5ED19GATA_GEOBB6, ., 3, ., 5, ., -0.31700.86340.9257yesno
B0JSX3GATA_MICAN6, ., 3, ., 5, ., -0.33590.85760.9233yesno
B8HY89GATA_CYAP46, ., 3, ., 5, ., -0.31270.84420.9107yesno
B1WYP3GATA_CYAA56, ., 3, ., 5, ., -0.32600.83650.9024yesno
Q3Z6V3GATA_DEHE16, ., 3, ., 5, ., -0.30010.85190.9115yesno
A2CA16GATA_PROM36, ., 3, ., 5, ., -0.30930.84800.9074yesno
B7K0I2GATA_CYAP86, ., 3, ., 5, ., -0.31450.84420.9107yesno
B0KBN4GATA_THEP36, ., 3, ., 5, ., -0.30900.85190.9077yesno
Q9URY4YI01_SCHPO3, ., 5, ., 1, ., 40.38200.93260.8319yesno
B8FCK9GATA_DESAA6, ., 3, ., 5, ., -0.30380.86340.9257yesno
A2C1Y1GATA_PROM16, ., 3, ., 5, ., -0.31830.83840.8971yesno
Q46L72GATA_PROMT6, ., 3, ., 5, ., -0.32030.83840.8971yesno
Q8DK65GATA_THEEB6, ., 3, ., 5, ., -0.31800.84230.9087yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00041316
hypothetical protein (510 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_LG_VIII001519
glutamyl-tRNA(Gln) amidotransferase (EC-6.3.5.7) (506 aa)
• •   • 0.525
estExt_fgenesh4_pm.C_LG_X0145
glutamyl-tRNA(Gln) amidotransferase (529 aa)
• •   • 0.415

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query520
PRK08137497 PRK08137, PRK08137, amidase; Provisional 1e-154
PRK06828491 PRK06828, PRK06828, amidase; Provisional 1e-153
PRK06707536 PRK06707, PRK06707, amidase; Provisional 1e-120
COG0154475 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf 2e-91
pfam01425431 pfam01425, Amidase, Amidase 6e-78
PRK11910615 PRK11910, PRK11910, amidase; Provisional 4e-74
PRK00012459 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf 7e-64
TIGR00132460 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a 1e-60
PRK07488472 PRK07488, PRK07488, indole acetimide hydrolase; Va 4e-60
PRK07056454 PRK07056, PRK07056, amidase; Provisional 2e-39
PRK09201465 PRK09201, PRK09201, amidase; Provisional 5e-33
PRK06102452 PRK06102, PRK06102, hypothetical protein; Provisio 2e-32
TIGR02715452 TIGR02715, amido_AtzE, amidohydrolase, AtzE family 3e-32
PRK07487469 PRK07487, PRK07487, amidase; Provisional 6e-32
TIGR02713 561 TIGR02713, allophanate_hyd, allophanate hydrolase 2e-31
PRK07486484 PRK07486, PRK07486, amidase; Provisional 5e-31
PRK08186 600 PRK08186, PRK08186, allophanate hydrolase; Provisi 6e-31
PRK06565566 PRK06565, PRK06565, amidase; Validated 1e-30
PRK06170490 PRK06170, PRK06170, amidase; Provisional 2e-30
PRK07235502 PRK07235, PRK07235, amidase; Provisional 3e-30
PRK05962424 PRK05962, PRK05962, amidase; Validated 5e-30
PRK06061483 PRK06061, PRK06061, amidase; Provisional 9e-28
PRK07042464 PRK07042, PRK07042, amidase; Provisional 2e-27
PRK12470462 PRK12470, PRK12470, amidase; Provisional 3e-27
PRK06169466 PRK06169, PRK06169, putative amidase; Provisional 6e-27
PRK07869468 PRK07869, PRK07869, amidase; Provisional 1e-17
PLN02722422 PLN02722, PLN02722, indole-3-acetamide amidohydrol 7e-15
PRK08310395 PRK08310, PRK08310, amidase; Provisional 1e-14
PRK06529482 PRK06529, PRK06529, amidase; Provisional 3e-14
PRK07139439 PRK07139, PRK07139, amidase; Provisional 2e-13
PRK07869468 PRK07869, PRK07869, amidase; Provisional 3e-04
PRK06061483 PRK06061, PRK06061, amidase; Provisional 8e-04
PRK07486484 PRK07486, PRK07486, amidase; Provisional 0.003
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional Back     alignment and domain information 
 Score =  449 bits (1157), Expect = e-154
 Identities = 220/509 (43%), Positives = 290/509 (56%), Gaps = 41/509 (8%)

Query: 37  FPIREATIKDLQLAFKQNKLTSRQLVEFYLGEI---HRLNPLLHGVIEVNPDALSQADKA 93
               E     LQ A       + QL   YL  I    R  P L+ VIE+NPDA + A   
Sbjct: 1   QTALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPDAEADAAAL 60

Query: 94  DYERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKA 152
           D ERK   AG +RG LHGIP+LLKDNI   D M TTAGS AL  +   RDA +V +LR A
Sbjct: 61  DAERK---AGKVRGPLHGIPVLLKDNIDAADPMPTTAGSLALAGNRPTRDAFLVARLRDA 117

Query: 153 GAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAV 212
           GA+ILGKA+LSEW+NFRS+++ SG+S RGG  +NPY L   PCGSSSGS  +VAA LAAV
Sbjct: 118 GAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAAVAAGLAAV 177

Query: 213 SLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDA 272
           ++GTETDGSI CP++ N +VGLKPT+GL SR G++PI+  QD+ GP+ RTVADAA VL A
Sbjct: 178 AIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTA 237

Query: 273 IAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHH 332
           IAG D  DPAT +A        Y   L    L+G RLG+ RN      E   +   F+  
Sbjct: 238 IAGGDPADPATASAPAPAVD--YVAALDADALRGARLGVARNYLGYHPE---VDAQFERA 292

Query: 333 LHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYL-KELVTSPVRSLAE 391
           L  L+  GA+VID +++ +          E   +L EFK  +NAYL      +PVR+LA+
Sbjct: 293 LAELKAAGAVVIDVVDLDD----GDWGEAEKVVLLHEFKAGLNAYLRSTAPHAPVRTLAD 348

Query: 392 VIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTR----DGFEKLMST 447
           +IAFN      E +  +GQ+L   A+A  G+   + A +  L    R    +G +  +  
Sbjct: 349 LIAFNRAQHARE-MPYFGQELFEQAQAAPGL--DDPAYLDALADAKRLAGPEGIDAALKE 405

Query: 448 NNLDALVTPRS----------------YASTLLAVGGFPGINVPAGYDSEGVPFGICFGG 491
           + LDALV P +                 +ST  AV G+P + VP G   +G+P G+ F G
Sbjct: 406 HRLDALVAPTTGPAWLIDLINGDSFGGSSSTPAAVAGYPHLTVPMGQ-VQGLPVGLSFIG 464

Query: 492 LKGTEPKLIEIAYGFEQATKIRKPPSFKS 520
              +E +L+E+ Y +EQAT  R+ P F  
Sbjct: 465 AAWSEARLLELGYAYEQATHARREPRFVE 493

Length = 497
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional Back     alignment and domain information
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216494 pfam01425, Amidase, Amidase Back     alignment and domain information
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional Back     alignment and domain information
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit Back     alignment and domain information
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated Back     alignment and domain information
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family Back     alignment and domain information
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional Back     alignment and domain information
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated Back     alignment and domain information
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional Back     alignment and domain information
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional Back     alignment and domain information
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase Back     alignment and domain information
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 520
PRK08137497 amidase; Provisional 100.0
COG0154475 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su 100.0
PRK11910615 amidase; Provisional 100.0
PRK06828491 amidase; Provisional 100.0
PRK06707536 amidase; Provisional 100.0
PRK06169466 putative amidase; Provisional 100.0
PRK07042464 amidase; Provisional 100.0
PRK06170490 amidase; Provisional 100.0
PRK07486484 amidase; Provisional 100.0
PRK07488472 indole acetimide hydrolase; Validated 100.0
PRK07487469 amidase; Provisional 100.0
PRK09201465 amidase; Provisional 100.0
PRK06102452 hypothetical protein; Provisional 100.0
TIGR02715452 amido_AtzE amidohydrolase, AtzE family. Members of 100.0
TIGR00132460 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) 100.0
PRK00012459 gatA aspartyl/glutamyl-tRNA amidotransferase subun 100.0
PRK06565566 amidase; Validated 100.0
PRK07056454 amidase; Provisional 100.0
PRK12470462 amidase; Provisional 100.0
PRK06061483 amidase; Provisional 100.0
PRK08186 600 allophanate hydrolase; Provisional 100.0
PRK06529482 amidase; Provisional 100.0
PRK07869468 amidase; Provisional 100.0
PRK07235502 amidase; Provisional 100.0
PRK05962424 amidase; Validated 100.0
PF01425441 Amidase: Amidase; InterPro: IPR000120 Amidase sign 100.0
TIGR02713 561 allophanate_hyd allophanate hydrolase. Allophanate 100.0
PRK07139439 amidase; Provisional 100.0
PRK08310395 amidase; Provisional 100.0
PLN02722422 indole-3-acetamide amidohydrolase 100.0
KOG1211506 consensus Amidases [Translation, ribosomal structu 100.0
KOG1212560 consensus Amidases [Translation, ribosomal structu 100.0
>PRK08137 amidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.8e-102  Score=828.52  Aligned_cols=469  Identities=46%  Similarity=0.707  Sum_probs=384.4

Q ss_pred             cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHh---CCCccEEEecCHhHHHHHHHHhHHHHHhcCCCCCCcccceee
Q 010029           38 PIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRL---NPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPIL  114 (520)
Q Consensus        38 ~~~~~s~~~l~~~~~~g~~t~~e~~~~~l~ri~~~---~~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~GvPi~  114 (520)
                      +++++++.+|+++|++|++|++|++++||+||+++   |+.+|||++++++|+++|+++|+++  ++|+.+||||||||+
T Consensus         2 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~al~~A~~~d~~~--~~g~~~gpL~GvPi~   79 (497)
T PRK08137          2 TALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPDAEADAAALDAER--KAGKVRGPLHGIPVL   79 (497)
T ss_pred             chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHHHHHHHHHHHHHH--hcCCCCCCcCCceee
Confidence            45678999999999999999999999999999988   6789999999988999999999988  788889999999999


Q ss_pred             eecccCcc-CCccccccchhhcCCCCCCchHHHHHHHHcCCeEEEecCcchhcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010029          115 LKDNIATK-DKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD  193 (520)
Q Consensus       115 vKD~~~~~-gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GKTn~~Efa~~~~~~~~~~~n~~~G~~~NP~~~~~~  193 (520)
                      |||||+++ | ++||+||..++++++.+||++|+|||+||||++||||||||+++.++.+.+|+|++||+|+||||++|+
T Consensus        80 vKD~~~v~~G-~~tt~Gs~~~~~~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~  158 (497)
T PRK08137         80 LKDNIDAADP-MPTTAGSLALAGNRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRS  158 (497)
T ss_pred             eecceeecCC-CCcCcCcHhhcCCCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            99999999 9 999999999999999999999999999999999999999999755444567899999999999999999


Q ss_pred             CCCCChhHHHHHhhcCCceecccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccCccccCHHHHHHHHHHH
Q 010029          194 PCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAI  273 (520)
Q Consensus       194 pGGSSgGsaaaVAag~~~~alGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gpmarsv~D~a~~~~~l  273 (520)
                      |||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|
T Consensus       159 ~GGSSgGsAaAVAaG~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~vl  238 (497)
T PRK08137        159 PCGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTAI  238 (497)
T ss_pred             CCcCccHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCceeCCCCCCcccccCcccCeeCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCCccccccccCCCCcccccccCCCCCCceEEEecCCCCCCCCChHHHHHHHHHHHHHHhCCCEEEecccCCcch
Q 010029          274 AGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNIN  353 (520)
Q Consensus       274 ~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~  353 (520)
                      .|+|+.|+.+...+  ....+|.+.+....++++||||+.+++   .+|++++++++++++.|+++||+|++ +++|.+.
T Consensus       239 ~g~d~~d~~~~~~~--~~~~~~~~~~~~~~~~~lrIgv~~~~~---~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~~~~  312 (497)
T PRK08137        239 AGGDPADPATASAP--APAVDYVAALDADALRGARLGVARNYL---GYHPEVDAQFERALAELKAAGAVVID-VVDLDDG  312 (497)
T ss_pred             hCCCCCCcccccCC--CCccchhhhccccccCCCEEEEEchhc---cCCHHHHHHHHHHHHHHHHCCCEEEe-ccCCchh
Confidence            99999986654321  001134332222246889999997643   37999999999999999999999988 6766544


Q ss_pred             hhhccchhhHHHHHHHHHHHHHHHHHHhc-cCCcccHHHHHHhhccccchHHHhhhcHHHHHHhhhcCCCC-HHHHHHHH
Q 010029          354 SLNSIANDETTAMLAEFKLAINAYLKELV-TSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIG-KTEKAAIL  431 (520)
Q Consensus       354 ~~~~~~~~~~~~~~~e~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~  431 (520)
                      ...   ..+..++..|+..++..|+.... .....++.+++.+...... .....+++.+......+..++ .+|..+++
T Consensus       313 ~~~---~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  388 (497)
T PRK08137        313 DWG---EAEKVVLLHEFKAGLNAYLRSTAPHAPVRTLADLIAFNRAQHA-REMPYFGQELFEQAQAAPGLDDPAYLDALA  388 (497)
T ss_pred             hHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhccch-hhhcccCHHHHHHHHccCCCCHHHHHHHHH
Confidence            332   23345666788777777654321 1123345554443221110 112234555544443334444 34444444


Q ss_pred             HHHHH-HHHHHHHHHHhCCCCEEEecCCc----------------chHhhhhcCCCeeeeccCCCCCCCceeEEEEccCC
Q 010029          432 NLERF-TRDGFEKLMSTNNLDALVTPRSY----------------ASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKG  494 (520)
Q Consensus       432 ~~r~~-~~~~~~~~~~~~~~D~Ll~Pt~~----------------~t~~~Nl~G~PaisVP~G~~~~GlPvGlQlvg~~~  494 (520)
                      .++.. .++.+.++|+++++|+||+|+++                ++.++|++|+|++|||+|+. +|||+||||+|++|
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~ap~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvQlig~~~  467 (497)
T PRK08137        389 DAKRLAGPEGIDAALKEHRLDALVAPTTGPAWLIDLINGDSFGGSSSTPAAVAGYPHLTVPMGQV-QGLPVGLSFIGAAW  467 (497)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEeCCCCCCcccccccccccccccccccHhhCCCeEEEeCCCC-CCcCeEEEEECCCC
Confidence            34444 34679999986679999999964                35689999999999999997 89999999999999


Q ss_pred             ChHHHHHHHHHHHHHcCCCCCCCCCC
Q 010029          495 TEPKLIEIAYGFEQATKIRKPPSFKS  520 (520)
Q Consensus       495 ~D~~LL~~A~~lE~~~~~~~~P~~~~  520 (520)
                      +|+.||++|++||+..+|+++|.|.+
T Consensus       468 ~d~~LL~~a~~lE~~~~~~~~p~~~~  493 (497)
T PRK08137        468 SEARLLELGYAYEQATHARREPRFVE  493 (497)
T ss_pred             CHHHHHHHHHHHHHhcCcCCCCCCCC
Confidence            99999999999999999999998764

>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11910 amidase; Provisional Back     alignment and domain information
>PRK06828 amidase; Provisional Back     alignment and domain information
>PRK06707 amidase; Provisional Back     alignment and domain information
>PRK06169 putative amidase; Provisional Back     alignment and domain information
>PRK07042 amidase; Provisional Back     alignment and domain information
>PRK06170 amidase; Provisional Back     alignment and domain information
>PRK07486 amidase; Provisional Back     alignment and domain information
>PRK07488 indole acetimide hydrolase; Validated Back     alignment and domain information
>PRK07487 amidase; Provisional Back     alignment and domain information
>PRK09201 amidase; Provisional Back     alignment and domain information
>PRK06102 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02715 amido_AtzE amidohydrolase, AtzE family Back     alignment and domain information
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit Back     alignment and domain information
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>PRK06565 amidase; Validated Back     alignment and domain information
>PRK07056 amidase; Provisional Back     alignment and domain information
>PRK12470 amidase; Provisional Back     alignment and domain information
>PRK06061 amidase; Provisional Back     alignment and domain information
>PRK08186 allophanate hydrolase; Provisional Back     alignment and domain information
>PRK06529 amidase; Provisional Back     alignment and domain information
>PRK07869 amidase; Provisional Back     alignment and domain information
>PRK07235 amidase; Provisional Back     alignment and domain information
>PRK05962 amidase; Validated Back     alignment and domain information
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence Back     alignment and domain information
>TIGR02713 allophanate_hyd allophanate hydrolase Back     alignment and domain information
>PRK07139 amidase; Provisional Back     alignment and domain information
>PRK08310 amidase; Provisional Back     alignment and domain information
>PLN02722 indole-3-acetamide amidohydrolase Back     alignment and domain information
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query520
1m21_A503 Crystal Structure Analysis Of The Peptide Amidase P 9e-93
3h0l_A478 Structure Of Trna-Dependent Amidotransferase Gatcab 8e-28
2df4_A485 Structure Of Trna-Dependent Amidotransferase Gatcab 3e-25
3al0_A475 Crystal Structure Of The Glutamine Transamidosome F 2e-24
2gi3_A476 Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf 6e-22
3kfu_E471 Crystal Structure Of The Transamidosome Length = 47 7e-20
2dc0_A434 Crystal Structure Of Amidase Length = 434 1e-15
3a1k_A521 Crystal Structure Of Rhodococcus Sp. N771 Amidase L 3e-15
3a1i_A521 Crystal Structure Of Rhodococcus Sp. N-771 Amidase 6e-15
4gyr_A 621 Granulibacter Bethesdensis Allophanate Hydrolase Ap 1e-12
3a2p_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 6e-09
1obl_A414 Crystal Structure Of The S133a Mutant Of Malonamida 9e-09
1o9o_A414 Crystal Structure Of The S131a Mutant Of Malonamida 9e-09
3a2q_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 1e-08
1obk_A414 Crystal Structure Of The R158q Mutant Of Malonamida 9e-08
1obi_A414 Crystal Structure Of The G130a Mutant Of Malonamida 9e-08
1ock_A412 The Crystal Structure Of Malonamidase E2 From Brady 1e-07
1o9q_A414 Crystal Structure Of The S155c Mutant Of Malonamida 4e-07
1obj_A414 Crystal Structure Of The T150a Mutant Of Malonamida 5e-07
1o9n_A414 Crystal Structure Of The K62a Mutant Of Malonamidas 6e-07
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503 Back     alignment and structure 
Iteration: 1

 Score =  337 bits (864), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 214/513 (41%), Positives = 296/513 (57%), Gaps = 53/513 (10%)
Query: 37  FPIREATIKDLQLAFKQNKLTSRQLVEFYLGEI---HRLNPLLHGVIEVNPDALSQADKA 93
           FP  E  + DLQ      +L S  L + YL  I    R  P L  VIE+NPDAL +A  A
Sbjct: 6   FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEA--A 63
Query: 94  DYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAG 153
           + +R+ +       LHGIP+LLKDNI     M T+AGS AL +   P DA +V +LR AG
Sbjct: 64  ERDRERRDGRLRGPLHGIPLLLKDNI-NAAPMATSAGSLAL-QGFRPDDAYLVRRLRDAG 121
Query: 154 AIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVS 213
           A++LGK +LSEW+NFR + + SG+S RGGQ +NPY +S  PC            NLA+V+
Sbjct: 122 AVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVA 181
Query: 214 LGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAI 273
           +GTETDGSI+CP++ N VVGLKPT+GL SR G+IPI+  QD+ GP+ R+VADAA VL AI
Sbjct: 182 IGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAI 241
Query: 274 AGFDHYDPAT-----RAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQV 328
           AG D  DPAT     RA  +Y  R      L P GL+GKR+G+++ P   +    PL   
Sbjct: 242 AGRDDADPATATMPGRAVYDYTAR------LDPQGLRGKRIGLLQTPLLKYRGMPPL--- 292
Query: 329 FDHHLHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRS 388
            +     LR+ GA+V+  +E+ N  +    A  E T +L EFK  +  Y      +P+RS
Sbjct: 293 IEQAATELRRAGAVVV-PVELPNQGAW---AEAERTLLLYEFKAGLERYFNTH-RAPLRS 347
Query: 389 LAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTR----DGFEKL 444
           LA++IAFN   S  +++  +GQ+LL+ A+AT G+   + A I       R    +G +  
Sbjct: 348 LADLIAFNQAHSK-QELGLFGQELLVEADATAGL--ADPAYIRARSDARRLAGPEGIDAA 404
Query: 445 MSTNNLDALVTP-----------------RSYASTLLAVGGFPGINVPAGYDSEGVPFGI 487
           ++ + LDALV P                  SY++   AV G+P + VP G   +G+P G+
Sbjct: 405 LAAHQLDALVAPTTGVAWPIRSEGDDFPGESYSAA--AVAGYPSLTVPMG-QIDGLPVGL 461
Query: 488 CFGGLKGTEPKLIEIAYGFEQATKIRKPPSFKS 520
            F G   +EPKLIE+AY +EQ T+ R+PP F +
Sbjct: 462 LFMGTAWSEPKLIEMAYAYEQRTRARRPPHFDT 494
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478 Back     alignment and structure
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485 Back     alignment and structure
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475 Back     alignment and structure
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476 Back     alignment and structure
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471 Back     alignment and structure
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434 Back     alignment and structure
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521 Back     alignment and structure
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521 Back     alignment and structure
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621 Back     alignment and structure
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Length = 493 Back     alignment and structure
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Complexed With Substrate Length = 493 Back     alignment and structure
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 412 Back     alignment and structure
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query520
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 0.0
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 2e-70
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 7e-68
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 3e-65
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 5e-04
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 4e-64
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 4e-04
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 2e-63
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 5e-04
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 5e-63
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 2e-61
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 7e-58
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 5e-04
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 8e-51
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503 Back     alignment and structure
 Score =  588 bits (1518), Expect = 0.0
 Identities = 219/505 (43%), Positives = 300/505 (59%), Gaps = 37/505 (7%)

Query: 37  FPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLN---PLLHGVIEVNPDALSQADKA 93
           FP  E  + DLQ      +L S  L + YL  I  L+   P L  VIE+NPDAL +A + 
Sbjct: 6   FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAER 65

Query: 94  DYERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKA 152
           D ER     G LRG LHGIP+LLKDNI     M T+AGS AL     P DA +V +LR A
Sbjct: 66  DRER---RDGRLRGPLHGIPLLLKDNINAAP-MATSAGSLALQ-GFRPDDAYLVRRLRDA 120

Query: 153 GAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAV 212
           GA++LGK +LSEW+NFR + + SG+S RGGQ +NPY +S  PCGSSSGSA++VAANLA+V
Sbjct: 121 GAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASV 180

Query: 213 SLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDA 272
           ++GTETDGSI+CP++ N VVGLKPT+GL SR G+IPI+  QD+ GP+ R+VADAA VL A
Sbjct: 181 AIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTA 240

Query: 273 IAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHH 332
           IAG D  DPAT           Y   L P GL+GKR+G+++ P     +   +  + +  
Sbjct: 241 IAGRDDADPATATMPGRAVY-DYTARLDPQGLRGKRIGLLQTP---LLKYRGMPPLIEQA 296

Query: 333 LHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEV 392
              LR+ GA+V+       + +  + A  E T +L EFK  +  Y      +P+RSLA++
Sbjct: 297 ATELRRAGAVVVP----VELPNQGAWAEAERTLLLYEFKAGLERYFNTH-RAPLRSLADL 351

Query: 393 IAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTE--KAAILNLERFTRDGFEKLMSTNNL 450
           IAFN   S  E +  +GQ+LL+ A+AT G+      +A          +G +  ++ + L
Sbjct: 352 IAFNQAHSKQE-LGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQL 410

Query: 451 DALVTPRSY---------------ASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGT 495
           DALV P +                + +  AV G+P + VP G   +G+P G+ F G   +
Sbjct: 411 DALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQ-IDGLPVGLLFMGTAWS 469

Query: 496 EPKLIEIAYGFEQATKIRKPPSFKS 520
           EPKLIE+AY +EQ T+ R+PP F +
Sbjct: 470 EPKLIEMAYAYEQRTRARRPPHFDT 494
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414 Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434 Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493 Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521 Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query520
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 100.0
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 100.0
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 100.0
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 100.0
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 100.0
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 100.0
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 100.0
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 100.0
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Back     alignment and structure
Probab=100.00  E-value=1.5e-107  Score=868.84  Aligned_cols=471  Identities=45%  Similarity=0.738  Sum_probs=400.3

Q ss_pred             CcccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CCccEEEecCHhHHHHHHHHhHHHHHhcCCCCCCcccc
Q 010029           35 HAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLN---PLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGI  111 (520)
Q Consensus        35 ~~~~~~~~s~~~l~~~~~~g~~t~~e~~~~~l~ri~~~~---~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~Gv  111 (520)
                      ..|++.++|+.+|+++|++|++|++||+++||+||+++|   +.+|||+++++||+++|+++|+++  ++|+..||||||
T Consensus         4 ~~~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~Al~~A~~~d~~~--~~g~~~gpL~Gv   81 (503)
T 1m22_A            4 VPFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRER--RDGRLRGPLHGI   81 (503)
T ss_dssp             -CCTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTTHHHHHHHHHHHH--HTTCCCSTTTTC
T ss_pred             CCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHHHHHHHHHH--HcCCCCCCcCCc
Confidence            467888999999999999999999999999999999999   999999999988999999999988  788889999999


Q ss_pred             eeeeecccCccCCccccccchhhcCCCCCCchHHHHHHHHcCCeEEEecCcchhcccCCCCCCCCCCCCCCCCCCCCCCC
Q 010029          112 PILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLS  191 (520)
Q Consensus       112 Pi~vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GKTn~~Efa~~~~~~~~~~~n~~~G~~~NP~~~~  191 (520)
                      ||+|||||+++| ++||+||..|+++++ +||++|+|||+|||||+||||||||+++.++.+..|+|++||+|+||||++
T Consensus        82 Pi~vKD~~~v~G-~~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~  159 (503)
T 1m22_A           82 PLLLKDNINAAP-MATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRIS  159 (503)
T ss_dssp             EEEEETTBCCTT-SCCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTT
T ss_pred             eeEeecccccCC-CCcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCC
Confidence            999999999997 999999999999999 999999999999999999999999998665556789999999999999999


Q ss_pred             CCCCCCChhHHHHHhhcCCceecccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccCccccCHHHHHHHHH
Q 010029          192 ADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLD  271 (520)
Q Consensus       192 ~~pGGSSgGsaaaVAag~~~~alGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gpmarsv~D~a~~~~  271 (520)
                      |+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|++++++
T Consensus       160 ~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~  239 (503)
T 1m22_A          160 HSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLT  239 (503)
T ss_dssp             BCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCCccccccccCCCCcccccccCCCCCCceEEEecCCCCCCCCChHHHHHHHHHHHHHHhCCCEEEecccCCc
Q 010029          272 AIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGN  351 (520)
Q Consensus       272 ~l~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~Vve~~~~p~  351 (520)
                      +|+|+|+.|+.+...+. .+..+|...+....++++||||+.+++ .  ++++++++++++++.|+++||+|++ +++|.
T Consensus       240 vl~g~d~~d~~~~~~~~-~~~~~~~~~~~~~~~~~lrIgv~~~~~-~--~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p~  314 (503)
T 1m22_A          240 AIAGRDDADPATATMPG-RAVYDYTARLDPQGLRGKRIGLLQTPL-L--KYRGMPPLIEQAATELRRAGAVVVP-VELPN  314 (503)
T ss_dssp             HHCCCCTTCGGGGGCTT-CCCCCGGGGCCTTTTTTCEEEEECSGG-G--GSTTHHHHHHHHHHHHHHTTCEEEE-ECCTT
T ss_pred             HHcCCCCCCcccccccc-ccccchhhhccccCCCCCEEEEECccc-c--CCHHHHHHHHHHHHHHHHcCCEEEE-eCCCc
Confidence            99999999976543210 011245544432356899999998754 2  7899999999999999999999997 78876


Q ss_pred             chhhhccchhhHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHhhccccchHHHhhhcHHHHHHhhhcCCC-CHHHHHHH
Q 010029          352 INSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGI-GKTEKAAI  430 (520)
Q Consensus       352 ~~~~~~~~~~~~~~~~~e~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~  430 (520)
                      +++..   ..++.++..|+..++..|+.... .+.+.+.+++.++..++. +....++++++........+ ..+|.+++
T Consensus       315 ~~~~~---~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  389 (503)
T 1m22_A          315 QGAWA---EAERTLLLYEFKAGLERYFNTHR-APLRSLADLIAFNQAHSK-QELGLFGQELLVEADATAGLADPAYIRAR  389 (503)
T ss_dssp             TTTTH---HHHHHHHHHHHHHHHHHHHHHTT-CSCCSHHHHHHHHHHTHH-HHSSSSCCHHHHHHHTCCCTTCHHHHHHH
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHhcC-cccccHHHHHHHhhhcch-hcccccCHHHHHHHHhcCCCCHHHHHHHH
Confidence            55332   23356677888888888887653 344556666554322210 11223555555554444433 35666666


Q ss_pred             HHHHHHHHHH-HHHHHHhCCCCEEEecCCc---------------chHhhhhcCCCeeeeccCCCCCCCceeEEEEccCC
Q 010029          431 LNLERFTRDG-FEKLMSTNNLDALVTPRSY---------------ASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKG  494 (520)
Q Consensus       431 ~~~r~~~~~~-~~~~~~~~~~D~Ll~Pt~~---------------~t~~~Nl~G~PaisVP~G~~~~GlPvGlQlvg~~~  494 (520)
                      ++++++.+++ +.++|+++++|+||+|+++               +|.+||++|+|+||||+|++ +|||+||||||++|
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~a~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvqlvg~~~  468 (503)
T 1m22_A          390 SDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQI-DGLPVGLLFMGTAW  468 (503)
T ss_dssp             HHHHHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC---CCTTCCHHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTT
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCEEEeCCCccCcccccccCcccccccccchhhCCCeEEeccccC-CCCCeEEEEECCCC
Confidence            6666665443 9999987679999999863               67899999999999999987 89999999999999


Q ss_pred             ChHHHHHHHHHHHHHcCCCCCCCCCC
Q 010029          495 TEPKLIEIAYGFEQATKIRKPPSFKS  520 (520)
Q Consensus       495 ~D~~LL~~A~~lE~~~~~~~~P~~~~  520 (520)
                      +|++||++|++||++++|+++|.+.|
T Consensus       469 ~d~~lL~~A~~~E~~~~~~~~p~~~~  494 (503)
T 1m22_A          469 SEPKLIEMAYAYEQRTRARRPPHFDT  494 (503)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             ChHHHHHHHHHHHHhhCCCCCCCCCC
Confidence            99999999999999999999998876
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 520
d2f2aa1485 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf 3e-79
d1m22a_490 c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon 2e-73
d2gi3a1475 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf 5e-68
d1mt5a_537 c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid 2e-46
d1ocka_412 c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap 2e-32
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score =  254 bits (649), Expect = 3e-79
 Identities = 131/505 (25%), Positives = 220/505 (43%), Gaps = 56/505 (11%)

Query: 39  IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYER 97
           IR  ++++L    K  K+    +V+     I   +P +   + ++ + A+ +A + D  +
Sbjct: 3   IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQ 62

Query: 98  KVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAII 156
              A   + G L GIP+ +KDNI T   + TT  S  L   V   ++ V+ KL K  A++
Sbjct: 63  ---AKDQMDGKLFGIPMGIKDNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAVL 118

Query: 157 LGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVAANLAAVSLGT 216
           +GK ++ E++   S+      +    +  NP+   A P GSS GSA +VAA L  +SLG+
Sbjct: 119 IGKLNMDEFAMGGST-----ETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGS 173

Query: 217 ETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGF 276
           +T GSI  P++   VVG+KPT G  SR G++      D +GP+ R V D A VL+AI+G 
Sbjct: 174 DTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGA 233

Query: 277 DHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTL 336
           D  D  +      +    +   +    +KG ++ + +  +        + +   + + TL
Sbjct: 234 DVNDSTSAP----VDDVDFTSEIGK-DIKGLKVALPKE-YLGEGVADDVKEAVQNAVETL 287

Query: 337 RQEGALVID----HLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEV 392
           +  GA+V +    + + G I S   IA+ E ++ L+ F      Y     +    SL E+
Sbjct: 288 KSLGAVVEEVSLPNTKFG-IPSYYVIASSEASSNLSRFDGIRYGYH----SKEAHSLEEL 342

Query: 393 IAFNNK--FSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNL 450
              +    F    K + +     LS+   D   K  +     ++      FE        
Sbjct: 343 YKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFEN------Y 396

Query: 451 DALVTP---------------------RSYASTLLAVGGFPGINVPAGYDSEGVPFGICF 489
           D +V P                         +T + + G PGI+VP G  S G P G+ F
Sbjct: 397 DVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQ-SNGRPIGLQF 455

Query: 490 GGLKGTEPKLIEIAYGFEQATKIRK 514
            G    E  L  +AY +E    +  
Sbjct: 456 IGKPFDEKTLYRVAYQYETQYNLHD 480
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490 Back     information, alignment and structure
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475 Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537 Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query520
d2f2aa1485 Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta 100.0
d1m22a_490 Peptide amidase Pam {Stenotrophomonas maltophilia 100.0
d1mt5a_537 Fatty acid amide hydrolase (oleamide hydrolase) {R 100.0
d2gi3a1475 Glutamyl-tRNA(Gln) amidotransferase subunit A {The 100.0
d1ocka_412 Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 100.0
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.3e-101  Score=823.57  Aligned_cols=450  Identities=26%  Similarity=0.399  Sum_probs=376.3

Q ss_pred             cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEecCHh-HHHHHHHHhHHHHHhcCCCCCCcccceeeee
Q 010029           38 PIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLK  116 (520)
Q Consensus        38 ~~~~~s~~~l~~~~~~g~~t~~e~~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vK  116 (520)
                      +|++.|+.||+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|+++  ++|+.+||||||||+||
T Consensus         2 ~~~~~s~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~--~~~~~~gpL~GiPi~vK   79 (485)
T d2f2aa1           2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQ--AKDQMDGKLFGIPMGIK   79 (485)
T ss_dssp             CSTTCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHH--HTTCCCSTTTTCEEEEE
T ss_pred             CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeCHHHHHHHHHHHHHHH--HCCCCCCCcCcCeEEEE
Confidence            578899999999999999999999999999999999999999999998 999999999998  88999999999999999


Q ss_pred             cccCccCCccccccchhhcCCCCCCchHHHHHHHHcCCeEEEecCcchhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010029          117 DNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCG  196 (520)
Q Consensus       117 D~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GKTn~~Efa~~~~~~~~~~~n~~~G~~~NP~~~~~~pGG  196 (520)
                      |||+++| ++||+||.+|+++++.+|+++|++||++|||++|||||+||++     +..+.|.+||+|+||||++++|||
T Consensus        80 D~~~v~g-~~tt~Gs~~~~~~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~-----~~~~~n~~~g~~~NP~~~~~~~GG  153 (485)
T d2f2aa1          80 DNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAM-----GGSTETSYFKKTVNPFDHKAVPGG  153 (485)
T ss_dssp             TTBCBTT-BCCCTTCGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGC-----CSSSTTCSSCCCCBTTBTTBCCCS
T ss_pred             cccccCC-CccCCcChhhccCCccccccccccccccccccccccchhhhcc-----cccccCccccCcCCCCCcccccCC
Confidence            9999997 9999999999999999999999999999999999999999998     678899999999999999999999


Q ss_pred             CChhHHHHHhhcCCceecccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccCccccCHHHHHHHHHHHhCC
Q 010029          197 SSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGF  276 (520)
Q Consensus       197 SSgGsaaaVAag~~~~alGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gpmarsv~D~a~~~~~l~g~  276 (520)
                      ||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|+
T Consensus       154 SSgGsaaavA~g~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~~~g~  233 (485)
T d2f2aa1         154 SSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGA  233 (485)
T ss_dssp             SSHHHHHHHHTTSCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSC
T ss_pred             ccccchhhHHhccCceEEecCCCchhhhhHHHhCceeecCCCCCCCCCCCCCCcccCCeeccccCCHHHHHHHHhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccccCCCCcccccccCCCCCCceEEEecCCCCCCCCChHHHHHHHHHHHHHHhCCCEEEecccCCcchhhh
Q 010029          277 DHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNINSLN  356 (520)
Q Consensus       277 d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~~~~  356 (520)
                      ++.|+.+...    +..+|...+. .+++++||||+.+++.. .++++++++++++++.|+++|++|++ +++|.+....
T Consensus       234 ~~~d~~~~~~----~~~~~~~~~~-~~~~~lrig~~~~~~~~-~~~~~i~~a~~~a~~~L~~~G~~v~e-v~lp~~~~~~  306 (485)
T d2f2aa1         234 DVNDSTSAPV----DDVDFTSEIG-KDIKGLKVALPKEYLGE-GVADDVKEAVQNAVETLKSLGAVVEE-VSLPNTKFGI  306 (485)
T ss_dssp             BTTBTTSCCC----CCCCCSTTTT-CCCTTCEEEEEGGGGST-TSCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTGGGHH
T ss_pred             cccccccCCC----Cccchhhhhc-CCccCCEEEEEcccccC-cCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCchhhhH
Confidence            9999766543    3335555544 46899999999887665 68999999999999999999999998 7888765432


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHhc---cCCcccHHHHHHhhccccchHHHhhhcHHHHHHh-----hhcCCCCHHHHH
Q 010029          357 SIANDETTAMLAEFKLAINAYLKELV---TSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSA-----EATDGIGKTEKA  428 (520)
Q Consensus       357 ~~~~~~~~~~~~e~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  428 (520)
                         ..+..+...|+..++..|.....   .....++.++....       +...+++++..+.     .....+....+.
T Consensus       307 ---~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~  376 (485)
T d2f2aa1         307 ---PSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMS-------RSEGFGKEVKRRIFLGTFALSSGYYDAYYK  376 (485)
T ss_dssp             ---HHHHHHHHHHHHHHTTTCSSSSSSCCCSSCCSHHHHHHHH-------HHHHSCHHHHHHHHHHHHHHSTTTTTTTHH
T ss_pred             ---HHHHHHHHHHHHHHHHHhhhhhhccccccccCHHHHHHHh-------hhhhcCHHHHHHHHhhhhhhcchhHHHHHH
Confidence               23344555566655443322111   11123444443322       1122333332111     111222222233


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEecCCc---------------------chHhhhhcCCCeeeeccCCCCCCCceeE
Q 010029          429 AILNLERFTRDGFEKLMSTNNLDALVTPRSY---------------------ASTLLAVGGFPGINVPAGYDSEGVPFGI  487 (520)
Q Consensus       429 a~~~~r~~~~~~~~~~~~~~~~D~Ll~Pt~~---------------------~t~~~Nl~G~PaisVP~G~~~~GlPvGl  487 (520)
                      ..++.+...++.++++|+  ++|+||+|+++                     +|.+||++|+|++|||+|+. +|+|+||
T Consensus       377 ~~~~~~~~~~~~~~~~f~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~G~~-dGlPvGl  453 (485)
T d2f2aa1         377 KSQKVRTLIKNDFDKVFE--NYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGL  453 (485)
T ss_dssp             HHHHHHHHHHHHHHHHTT--TCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHc--cCCEEEeCCCCCCCCCcccccCCHHHHhhhhHHHHHHHHHCCCeEEEECCCC-CCCCEeE
Confidence            333444445566888886  59999999875                     46789999999999999975 8999999


Q ss_pred             EEEccCCChHHHHHHHHHHHHHcCCCCC
Q 010029          488 CFGGLKGTEPKLIEIAYGFEQATKIRKP  515 (520)
Q Consensus       488 Qlvg~~~~D~~LL~~A~~lE~~~~~~~~  515 (520)
                      ||||++|+|+.||++|++||++++|++.
T Consensus       454 Qiig~~~~D~~LL~~A~~~E~~~~~~~~  481 (485)
T d2f2aa1         454 QFIGKPFDEKTLYRVAYQYETQYNLHDV  481 (485)
T ss_dssp             EEECSTTCHHHHHHHHHHHHHHSCCTTT
T ss_pred             EEECCCCCHHHHHHHHHHHHhhCCCCcC
Confidence            9999999999999999999999998744
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure