Citrus Sinensis ID: 010031
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 520 | 2.2.26 [Sep-21-2011] | |||||||
| Q9MAT2 | 665 | Pentatricopeptide repeat- | yes | no | 0.892 | 0.697 | 0.507 | 1e-141 | |
| Q9LS72 | 600 | Pentatricopeptide repeat- | no | no | 0.901 | 0.781 | 0.341 | 3e-85 | |
| Q56X05 | 577 | Pentatricopeptide repeat- | no | no | 0.95 | 0.856 | 0.335 | 6e-79 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.894 | 0.670 | 0.319 | 4e-78 | |
| Q9SJG6 | 559 | Pentatricopeptide repeat- | no | no | 0.821 | 0.763 | 0.366 | 2e-77 | |
| Q9CA54 | 643 | Pentatricopeptide repeat- | no | no | 0.871 | 0.704 | 0.329 | 3e-76 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.836 | 0.814 | 0.327 | 2e-75 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.886 | 0.622 | 0.331 | 4e-74 | |
| O49399 | 545 | Pentatricopeptide repeat- | no | no | 0.925 | 0.882 | 0.327 | 2e-73 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.903 | 0.636 | 0.307 | 4e-73 |
| >sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 503 bits (1296), Expect = e-141, Method: Compositional matrix adjust.
Identities = 236/465 (50%), Positives = 326/465 (70%), Gaps = 1/465 (0%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E+H ISLIH+ T LR +HAQI+ + SSR+ QL+S +SL KS DY+LSIF +
Sbjct: 29 ESHFISLIHACKDTASLRHVHAQILRRGVL-SSRVAAQLVSCSSLLKSPDYSLSIFRNSE 87
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+N + N LIRGL EN+ F+S + HF+ MLRL V+P+RLT+PFV KS + L LGR
Sbjct: 88 ERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRA 147
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
LH +K+ V+ D+FVR+ L DMY + G+ + AF+VF+E+P++ K ES+L+WNVLING
Sbjct: 148 LHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYC 207
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ + A LF MP++N SW +LI G++ G+L +A +LFE MPEK VVSWT +ING
Sbjct: 208 RAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLING 267
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
FSQ G+ E A++ +F+ML+ G++ N++T+ + LSAC+K GAL +G+R+H YI N L
Sbjct: 268 FSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
AIGTALVDMYAKCG ++ A+ VF KD+L+WTAMI G A+HGR+ QAIQ F++MMY
Sbjct: 328 RAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY 387
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
SG +PD VFLA+LTAC S +V L LNFFDSMR DY IEP++KH+ +VV+LL R G+++
Sbjct: 388 SGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLN 447
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+A + MP PD W AL+ AC+ HK + A+ Q+ L+
Sbjct: 448 EAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELD 492
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 316 bits (809), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 174/509 (34%), Positives = 276/509 (54%), Gaps = 40/509 (7%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
S I E + L +N Q++Q+HAQII NL I +LIS+ SL + + A+ +
Sbjct: 15 SRRIFEERLQDLPKCAN-LNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRV 73
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F+ N+H+ N LIR A+NS F M R + + TYPF+ K+ + S L
Sbjct: 74 FNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWL 133
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK--TRGAFKVFDETPEKNKSESVLLWN 203
+ + +H I K G+ D +V L D Y + G R A K+F++ E++ + WN
Sbjct: 134 PVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERD----TVSWN 189
Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
++ G K G LR A LF MP++++ SW +++DG+ R ++ KA ELFE+MPE+ VS
Sbjct: 190 SMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVS 249
Query: 264 WTAMINGFSQNGEAEKALAMF---------------------------------FQMLDA 290
W+ M+ G+S+ G+ E A MF QM+ +
Sbjct: 250 WSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVAS 309
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
G++ + V+S L+AC + G L G+R+H+ + ++ G + AL+DMYAKCGN++ A
Sbjct: 310 GLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKA 369
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF + +KDL++W M+ GL +HG ++AI+ F +M G PD F+A+L +C ++
Sbjct: 370 FDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHA 429
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G + +++F SM Y + P V+H+ +V+LL RVG++ +A+ + MP P+ VIWGA
Sbjct: 430 GLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGA 489
Query: 471 LFCACRTHKDTKIAKIALQSSCSLNLSIP 499
L ACR H + IAK L + L+ P
Sbjct: 490 LLGACRMHNEVDIAKEVLDNLVKLDPCDP 518
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 295 bits (755), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 172/512 (33%), Positives = 271/512 (52%), Gaps = 18/512 (3%)
Query: 18 NIKSSHKPSNNITE---------THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
N+ S PS+++ + ++ +I ++ K L A +I +L R+ Q
Sbjct: 6 NVHSLRVPSHHLRDFSASLSLAPPNLKKIIKQCSTPKLLESALAAMIKTSLNQDCRLMNQ 65
Query: 69 LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
I++ + K +D A+S N+ ++N L +G SH + +V MLR SV P+
Sbjct: 66 FITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPS 125
Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
TY + K+ + S G L I K G + ++ L D Y G+ R A KVFD
Sbjct: 126 SYTYSSLVKASSFAS--RFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFD 183
Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
E PE++ + W +++ ++ + A L M +KN A+ LI+G+M G+L++
Sbjct: 184 EMPERDD----IAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQ 239
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A LF QMP K ++SWT MI G+SQN +A+A+F++M++ G+ ++ T+ + +SACA
Sbjct: 240 AESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAH 299
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+G LE G VH Y N F L IG+ALVDMY+KCG++E A LVF +K+L W ++
Sbjct: 300 LGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSI 359
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
I GLA HG ++A++ F KM +P+ F+++ TAC ++G V + SM DY
Sbjct: 360 IEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYS 419
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
I +V+H+ +V+L S+ G + +AL I M P+ VIWGAL CR HK+ IA+IA
Sbjct: 420 IVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAF 479
Query: 489 QSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520
L P Y + + WR+
Sbjct: 480 NKLMVLE---PMNSGYYFLLVSMYAEQNRWRD 508
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (748), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 162/507 (31%), Positives = 274/507 (54%), Gaps = 42/507 (8%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
+++ SLI S+ QL+QIHA++++ L S + T+LI ++S I +A +FD
Sbjct: 20 SDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDL 79
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
+ +N +IRG + N+HFQ + + M V P+ T+P + K+ + LS L +GR
Sbjct: 80 PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+H + + G + D FV+ L +Y + + A VF+ P ++ ++ W +++
Sbjct: 140 FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT--IVSWTAIVSAY 197
Query: 210 SKIGYLRKAVELFGMMPKKNV-ASWVSLI---DGFMRKGDLK------------------ 247
++ G +A+E+F M K +V WV+L+ + F DLK
Sbjct: 198 AQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEP 257
Query: 248 -----------KAGE------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
K G+ LF++M ++ W AMI+G+++NG A +A+ MF +M++
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINK 317
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
VR + ++ SA+SACA+VG+LE ++ Y+ +D+ I +AL+DM+AKCG++E A
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGA 377
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
LVF T ++D++ W+AMI G +HGR +AI ++ M G P+ FL +L AC +S
Sbjct: 378 RLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHS 437
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G V+ FF+ M D+ I P +H+ V++LL R G +D+A I MP P +WGA
Sbjct: 438 GMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGA 496
Query: 471 LFCACRTHKDTKIAKIALQSSCSLNLS 497
L AC+ H+ ++ + A Q S++ S
Sbjct: 497 LLSACKKHRHVELGEYAAQQLFSIDPS 523
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 171/466 (36%), Positives = 258/466 (55%), Gaps = 39/466 (8%)
Query: 26 SNNITETHIISLIHSSNST-KQLRQIHAQIILHNLFASSRITTQLISSASLHKS-IDYAL 83
S +++ + LI + ST ++L+QIHA +I L + + +++++ S ++YA
Sbjct: 19 SGSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAY 78
Query: 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML--RLSVRPNRLTYPFVSKSVAS 141
+F KN ++N +IRG + +S + IS F+ ML SV+P RLTYP V K+
Sbjct: 79 LVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGR 138
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L GR LH +++K G+E D+F+R + MYV G A+++F
Sbjct: 139 LGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIF-------------- 184
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
IG+ +V +W S+I GF + G + +A LF++MP++
Sbjct: 185 -------LGMIGF--------------DVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNG 223
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
VSW +MI+GF +NG + AL MF +M + V+ + FT+VS L+ACA +GA E G +H Y
Sbjct: 224 VSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEY 283
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
I N F L + TAL+DMY KCG IE VF +K L W +MI GLA +G E+A
Sbjct: 284 IVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERA 343
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+ F ++ SG EPD F+ +LTAC +SG+V A FF M+ Y IEPS+KH+T++VN
Sbjct: 344 MDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVN 403
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
+L G +++A I MP D VIW +L ACR + ++AK A
Sbjct: 404 VLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRA 449
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 152/461 (32%), Positives = 260/461 (56%), Gaps = 8/461 (1%)
Query: 33 HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFT 90
H +SL++S + + L QIH I + + S T +LI + S+ ++ YA + F
Sbjct: 7 HCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFP 66
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGR 149
+ +FN L+RG +E+ + ++ FV M+R V P+ ++ FV K+V + L G
Sbjct: 67 EPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGF 126
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+HC +K G+E FV L MY G A KVFDE + N ++ WN +I C
Sbjct: 127 QMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPN----LVAWNAVITAC 182
Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
+ + A E+F M +N SW ++ G+++ G+L+ A +F +MP + VSW+ MI
Sbjct: 183 FRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIV 242
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
G + NG ++ F ++ AG+ N+ ++ LSAC++ G+ E G +H ++ +
Sbjct: 243 GIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSW 302
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKD-LLTWTAMIWGLAIHGRYEQAIQYFKKM 388
++ AL+DMY++CGN+ A LVF +EK +++WT+MI GLA+HG+ E+A++ F +M
Sbjct: 303 IVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEM 362
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
G PDG F+++L AC ++G ++ ++F M+ Y IEP ++H+ +V+L R G+
Sbjct: 363 TAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGK 422
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQ 489
+ KA +FI +MP P ++W L AC +H + ++A+ Q
Sbjct: 423 LQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQ 463
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 283 bits (725), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 155/474 (32%), Positives = 254/474 (53%), Gaps = 39/474 (8%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
E + I + S + ++I+A II+H L SS + T+++ + +DYA +F+
Sbjct: 9 VENYFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQV 68
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVSKSVASLSLLSLG 148
+ N+ ++N +IR NS + I + +LR S P+R T+PF+ KS ASL LG
Sbjct: 69 SNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLG 128
Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
+ +H + K G + L DMY++ A KVFDE
Sbjct: 129 KQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDE------------------- 169
Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
M +++V SW SL+ G+ R G +KKA LF M +K +VSWTAMI
Sbjct: 170 ----------------MYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMI 213
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
+G++ G +A+ F +M AG+ ++ +++S L +CA++G+LE G +H Y F
Sbjct: 214 SGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFL 273
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+ + AL++MY+KCG I A +FG+ + KD+++W+ MI G A HG AI+ F +M
Sbjct: 274 KQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEM 333
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
+ +P+G FL +L+AC + G + L +FD MR DY IEP ++H+ ++++L+R G+
Sbjct: 334 QRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGK 393
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502
+++A+ MP PD IWG+L +CRT + +A +A+ L P+ M
Sbjct: 394 LERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELE---PEDM 444
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (713), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 179/540 (33%), Positives = 278/540 (51%), Gaps = 79/540 (14%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII---LHNL-FASSRITTQLISSASLH 76
SS P ++I +SL+H+ + + LR IHAQ+I LHN +A S++ I S
Sbjct: 23 SSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHF- 81
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
+ + YA+S+F NL I+N + RG A +S S + +V M+ L + PN T+PFV
Sbjct: 82 EGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVL 141
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-- 194
KS A G+ +H ++K G + D +V L MYVQ G+ A KVFD++P ++
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVV 201
Query: 195 -------------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
+ V+ WN +I+G ++ G ++A+ELF M K N
Sbjct: 202 SYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN 261
Query: 230 VAS--------------------------WV-------------SLIDGFMRKGDLKKAG 250
V W+ +LID + + G+L+ A
Sbjct: 262 VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETAC 321
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
LFE++P K V+SW +I G++ ++AL +F +ML +G ND T++S L ACA +G
Sbjct: 322 GLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLG 381
Query: 311 ALEAGVRVHNYISCNDFGLKG-----AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
A++ G +H YI D LKG ++ T+L+DMYAKCG+IEAA VF K L +W
Sbjct: 382 AIDIGRWIHVYI---DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 438
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
AMI+G A+HGR + + F +M G +PD F+ +L+AC +SG + L + F +M
Sbjct: 439 NAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ 498
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
DY + P ++H+ +++LL G +A IN M PD VIW +L AC+ H + ++ +
Sbjct: 499 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGE 558
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 276 bits (707), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 161/491 (32%), Positives = 269/491 (54%), Gaps = 10/491 (2%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH---KSIDYALSIF 86
T I+S + S +++Q HA ++ LF + ++L++ A+ + K++ YA SI
Sbjct: 38 TPVPILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSIL 97
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
+ N N +IR A +S + ++ F ML V P++ ++ FV K+ A+
Sbjct: 98 NRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFE 157
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
GR +H L +KSG+ D FV L ++Y + G A KV D P ++ + WN L+
Sbjct: 158 EGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRD----AVSWNSLL 213
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
+ + G + +A LF M ++NV SW +I G+ G +K+A E+F+ MP + VVSW A
Sbjct: 214 SAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNA 273
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRAND-FTVVSALSACAKVGALEAGVRVHNYISCN 325
M+ ++ G + L +F +MLD D FT+VS LSACA +G+L G VH YI +
Sbjct: 274 MVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKH 333
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
++G + TALVDMY+KCG I+ A VF T ++D+ TW ++I L++HG + A++ F
Sbjct: 334 GIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIF 393
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
+M+Y G +P+G F+ +L+AC + G + A F+ M Y +EP+++H+ +V+LL R
Sbjct: 394 SEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGR 453
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505
+G++++A +N++P ++ +L AC+ + A+ LNL + Y
Sbjct: 454 MGKIEEAEELVNEIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLR--DSSGYA 511
Query: 506 QTFMQQKGDGR 516
Q DGR
Sbjct: 512 QMSNLYASDGR 522
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (705), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 166/540 (30%), Positives = 272/540 (50%), Gaps = 70/540 (12%)
Query: 18 NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK 77
N + ++P+ N + ISLI S +QL+Q H +I F+ ++L + A+L
Sbjct: 17 NFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSS 76
Query: 78 --SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPF 134
S++YA +FD N +N LIR A I F+ M+ S PN+ T+PF
Sbjct: 77 FASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPF 136
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDA----------------------FVRVHLAD 172
+ K+ A +S LSLG+ LH + VKS V D F + D
Sbjct: 137 LIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 196
Query: 173 M---------YVQLGKTRGAFKVFDETP-------------------------------- 191
+ +VQ G A ++F +
Sbjct: 197 VVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCS 256
Query: 192 --EKNK-SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
E+N+ + ++ L N +++ +K G + A LF M +K+ +W +++DG+ D +
Sbjct: 257 YIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEA 316
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACA 307
A E+ MP+K +V+W A+I+ + QNG+ +AL +F ++ L ++ N T+VS LSACA
Sbjct: 317 AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACA 376
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+VGALE G +H+YI + + + +AL+ MY+KCG++E + VF +++D+ W+A
Sbjct: 377 QVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSA 436
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
MI GLA+HG +A+ F KM + +P+G F + AC ++G V A + F M +Y
Sbjct: 437 MIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNY 496
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
I P KH+ +V++L R G ++KA+ FI MP P +WGAL AC+ H + +A++A
Sbjct: 497 GIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMA 556
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 520 | ||||||
| 224060371 | 719 | predicted protein [Populus trichocarpa] | 0.921 | 0.666 | 0.612 | 1e-174 | |
| 359477907 | 677 | PREDICTED: pentatricopeptide repeat-cont | 0.917 | 0.704 | 0.619 | 1e-174 | |
| 449442481 | 679 | PREDICTED: pentatricopeptide repeat-cont | 0.901 | 0.690 | 0.607 | 1e-167 | |
| 15220333 | 665 | pentatricopeptide repeat-containing prot | 0.892 | 0.697 | 0.507 | 1e-140 | |
| 297848728 | 664 | pentatricopeptide repeat-containing prot | 0.890 | 0.697 | 0.511 | 1e-140 | |
| 255554062 | 404 | pentatricopeptide repeat-containing prot | 0.623 | 0.801 | 0.601 | 1e-131 | |
| 357516905 | 758 | Pentatricopeptide repeat-containing prot | 0.909 | 0.624 | 0.368 | 6e-90 | |
| 225423995 | 623 | PREDICTED: pentatricopeptide repeat-cont | 0.915 | 0.764 | 0.356 | 9e-90 | |
| 449531466 | 610 | PREDICTED: pentatricopeptide repeat-cont | 0.917 | 0.781 | 0.351 | 3e-87 | |
| 449441542 | 652 | PREDICTED: pentatricopeptide repeat-cont | 0.915 | 0.730 | 0.350 | 7e-87 |
| >gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa] gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 294/480 (61%), Positives = 367/480 (76%), Gaps = 1/480 (0%)
Query: 10 TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
T+ P +++ + P TE H ISLIH S + QL QIHAQII+HNL +SS ITTQL
Sbjct: 60 TSENKPKSSLSALFIPPTTPTEAHFISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQL 119
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
ISS+SL KSI+++L++F+H PKNL FN LIRGL NSHF + I HF MLR ++P+R
Sbjct: 120 ISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDR 179
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
LTYPFV KS+A L LG +HC+I++ G+E D+FVRV L DMYV++ K AFKVFDE
Sbjct: 180 LTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDE 239
Query: 190 TPEK-NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
+PE+ + S LLWNVLI GC K G ++KAV+LF MPKK SW +LIDGF + GD+ +
Sbjct: 240 SPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDR 299
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A ELF+QMPEK VVSWT M++GFS+NG++EKAL+MF +ML+ GVR N FT+VSALSACAK
Sbjct: 300 AMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAK 359
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+G LEAG+R+H YI N L A+GTALVDMYAKCGNIE+AS VFGET++K + TWT M
Sbjct: 360 IGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVM 419
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
IWG AIHG EQAI FK+MM++G +PD VFLA+LTAC +SGQV + LNFFDSMR DY
Sbjct: 420 IWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYC 479
Query: 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488
IEPS+KH+T++V++L R GQ+ +AL FI +MP PDFVIWGALFCACR HK TK+AK AL
Sbjct: 480 IEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFAL 539
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein At1g04840-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 296/478 (61%), Positives = 368/478 (76%), Gaps = 1/478 (0%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
+H PS + ETH I LIH+SN+ QL QIHAQI LHNLF++SR+ TQLISS+ KS+DY
Sbjct: 32 AHGPSRS-PETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDY 90
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
ALSIF F NL +FN LIRGLAENS F+ +SHFV MLRLS+RP+RLT PFV KSVA+
Sbjct: 91 ALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAA 150
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L + LGR LH ++K G+E+D+FVRV L DMYV++G+ ++FDE+P++NK+ES+LL
Sbjct: 151 LVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILL 210
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
WNVLINGC K+G L KA LF MP++N SW SLI+GF+R GDL +A ELF QMPEK V
Sbjct: 211 WNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNV 270
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
VSWT MINGFSQNG+ EKAL+MF++ML+ GVR ND TVVSAL AC K+GAL+ G R+HNY
Sbjct: 271 VSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNY 330
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
+S N F L IGTALVDMYAKCGNI++AS VF ETK KDLLTW+ MIWG AIHG ++QA
Sbjct: 331 LSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQA 390
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+Q F KM +G PD +FLAILTAC +SG V LNFF+SMR DY IEP++KH+T++V+
Sbjct: 391 LQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVD 450
Query: 442 LLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
LL R G++D+AL+FI MP PDFVIWGALFCACR HK+ ++A++ + L P
Sbjct: 451 LLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHP 508
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein At1g04840-like [Cucumis sativus] gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein At1g04840-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 285/469 (60%), Positives = 357/469 (76%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
ETH I LIH+SNST +LRQIH Q+ N+F+SSR+ TQ ISS S S+DYA+SIF F
Sbjct: 42 ETHFIDLIHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFE 101
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
KN ++FN LIRGLAENS F+S IS FV ML+ + P+RLT+PFV KS A+LS +GR
Sbjct: 102 LKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRA 161
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
LHC I+K G+E+D+FVRV L DMYV++ + A KVFDE+PE K+ SVL+WNVLI+G
Sbjct: 162 LHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYC 221
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
++G L KA ELF MPKK+ SW SLI+GFM+ GD+ +A ELF +MPEK VVSWT M+NG
Sbjct: 222 RMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNG 281
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
FSQNG+ EKAL FF ML+ G R ND+T+VSALSACAK+GAL+AG+R+HNY+S N F L
Sbjct: 282 FSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLN 341
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
IGTALVDMYAKCGNIE A VF ETKEK LL W+ MIWG AIHG + +A+QYF+ M +
Sbjct: 342 LVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKF 401
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
+GT+PD VFLA+L AC +SGQV L FFD+MR Y IEPS+KH+T+VV++L R G++D
Sbjct: 402 TGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLD 461
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499
+AL FI MP TPDFV+WGALFCACRTHK+ ++A++A + L P
Sbjct: 462 EALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHP 510
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840 gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana] gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 236/465 (50%), Positives = 326/465 (70%), Gaps = 1/465 (0%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E+H ISLIH+ T LR +HAQI+ + SSR+ QL+S +SL KS DY+LSIF +
Sbjct: 29 ESHFISLIHACKDTASLRHVHAQILRRGVL-SSRVAAQLVSCSSLLKSPDYSLSIFRNSE 87
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+N + N LIRGL EN+ F+S + HF+ MLRL V+P+RLT+PFV KS + L LGR
Sbjct: 88 ERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRA 147
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
LH +K+ V+ D+FVR+ L DMY + G+ + AF+VF+E+P++ K ES+L+WNVLING
Sbjct: 148 LHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYC 207
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ + A LF MP++N SW +LI G++ G+L +A +LFE MPEK VVSWT +ING
Sbjct: 208 RAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLING 267
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
FSQ G+ E A++ +F+ML+ G++ N++T+ + LSAC+K GAL +G+R+H YI N L
Sbjct: 268 FSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
AIGTALVDMYAKCG ++ A+ VF KD+L+WTAMI G A+HGR+ QAIQ F++MMY
Sbjct: 328 RAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY 387
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
SG +PD VFLA+LTAC S +V L LNFFDSMR DY IEP++KH+ +VV+LL R G+++
Sbjct: 388 SGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLN 447
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+A + MP PD W AL+ AC+ HK + A+ Q+ L+
Sbjct: 448 EAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELD 492
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 238/465 (51%), Positives = 325/465 (69%), Gaps = 2/465 (0%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E+H ISLIH+ T LR +HA I+ + SSR+ QL+S +SL KS DY+LSIF +
Sbjct: 29 ESHFISLIHTCKDTVSLRLVHAHILRRGVL-SSRVAAQLVSCSSLLKSPDYSLSIFRNSE 87
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+N +FN LIRGL EN+ F+ + HF+ ML L V+P+RLT+PFV KS + L LGR
Sbjct: 88 ERNPFVFNALIRGLTENARFECSVRHFILMLTLGVKPDRLTFPFVLKSNSKLGFRWLGRA 147
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
LH +K+ V+ D+FVRV L DMY + G+ AF+VF+ETP++ K ES+LLWNVL+NG
Sbjct: 148 LHAATLKNFVDCDSFVRVSLVDMYAKTGQLNHAFQVFEETPDRIKKESILLWNVLVNGYC 207
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ ++ A LF MP++N SW +LI G++ G+L +A +LFE MPEK VVSWT +ING
Sbjct: 208 RAKDMQMATTLFRSMPERNSGSWSTLIKGYVDNGELNRAKQLFELMPEKNVVSWTTLING 267
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
FSQ G+ E A++ +F+ML+ G++ N++TV + LSAC+K GAL +G+R+H YI N L
Sbjct: 268 FSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
AIGT+L+DMYAKCG ++ A+ VF KD+L+WTAMI G A+HGR+ QAIQ F++MMY
Sbjct: 328 RAIGTSLLDMYAKCGEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY 387
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
SG +PD VFLA+LTAC SG+V L LNFFDSMR DY IEP++KH+ +VV+LL R G++D
Sbjct: 388 SGEKPDEVVFLAVLTACLNSGEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLD 447
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+A + MP PD W AL+ AC+ HK + I LQ+ L+
Sbjct: 448 EAHELVEYMPINPDLTTWAALYRACKAHKSNR-TDIVLQNLLELD 491
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255554062|ref|XP_002518071.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223542667|gb|EEF44204.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/371 (60%), Positives = 288/371 (77%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
S N ETHII LIHSS + QL QIH QI+LHNL +SS IT QLISS+SL KSI Y+LSI
Sbjct: 30 SQNQIETHIIPLIHSSKTALQLHQIHTQILLHNLSSSSHITAQLISSSSLRKSIAYSLSI 89
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F+ + PKNL++FN LIRGL +N + I HF+ +LR ++P+ LT+ FV KS+ASLSL
Sbjct: 90 FNSYHPKNLYLFNALIRGLTDNYRYLDSIDHFILLLRSDIKPDHLTFSFVLKSIASLSLK 149
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
L R LH +I++ G+E+D+FVR+ + D+YV+L + + A KVFDE+P++ S LLWNVL
Sbjct: 150 GLARALHGMILRCGLEFDSFVRISMVDVYVKLEEVKLALKVFDESPQRFHEGSTLLWNVL 209
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
INGC K+G +RKA+ELF MP +N ASW SLI+GF + GDL++A E F++MP K VVSWT
Sbjct: 210 INGCCKVGDMRKALELFEDMPLRNTASWNSLINGFFKIGDLEQAIEHFDRMPVKDVVSWT 269
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
M+NGFSQNG+ EKAL++F +MLD V+ NDFT+VSALSACAK+GALEAG+R+H Y+ N
Sbjct: 270 TMVNGFSQNGDHEKALSVFSRMLDEDVKPNDFTIVSALSACAKIGALEAGLRIHKYLKDN 329
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
F L A+G ALVDM+AKCGNI +AS VF E KEKD++TW+ MIWG AIHG +E+AIQ F
Sbjct: 330 GFRLNRAVGNALVDMHAKCGNINSASQVFKEAKEKDIITWSVMIWGWAIHGHFEEAIQCF 389
Query: 386 KKMMYSGTEPD 396
K+MMY+G +PD
Sbjct: 390 KQMMYAGIQPD 400
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 186/505 (36%), Positives = 274/505 (54%), Gaps = 32/505 (6%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
P I E I+L+ S + ++L QI AQI+ H L + + I++ S K I +A
Sbjct: 6 PVQRIVEEKFITLLRSCKNYERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARK 65
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+FD N +N + RG +N H + + F + R++ PN T+P + KS L
Sbjct: 66 LFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEG 125
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN---------- 194
+ G +HC K G + ++FV L DMY + G A+KVF E E+N
Sbjct: 126 VREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIING 185
Query: 195 -----------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
V++W+VLI+G + + A ELF MP ++ SW +++
Sbjct: 186 YILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAML 245
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRAND 296
+G+ G+++ ++F++MPE+ V SW +I G+ +NG + L F +ML G V ND
Sbjct: 246 NGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPND 305
Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYAKCGNIEAASLVF 354
FT+V+ LSAC+++GAL+ G VH Y G KG +G L+DMYAKCG IE A +VF
Sbjct: 306 FTLVAVLSACSRLGALDMGKWVHVY--AESIGYKGNLFVGNVLIDMYAKCGVIENAVVVF 363
Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
KD+++W +I GLAIHG A+ F +M G EPDG F+ IL+AC + G VK
Sbjct: 364 NCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVK 423
Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA 474
+F SM Y I P ++H+ +V+LL R G +D+ALNFI KMP PD VIW AL A
Sbjct: 424 DGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGA 483
Query: 475 CRTHKDTKIAKIALQSSCSLNLSIP 499
CR +K+ +IA++ALQ L + P
Sbjct: 484 CRLYKNVEIAELALQRLIELEPNNP 508
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 181/508 (35%), Positives = 284/508 (55%), Gaps = 32/508 (6%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
+ KP + + E ISL+ S ++KQ+ QI AQII + + IT +L++ + K + Y
Sbjct: 29 APKPPHRLLEERFISLLQSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTY 88
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FD N+ ++N + RG A++ ++ + F M + +RPN T+P V KS
Sbjct: 89 ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGK 148
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------- 194
++ L G +HC ++K G + FV L DMY G A+K+F E E+N
Sbjct: 149 INALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSM 208
Query: 195 --------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
V+LWN++++G + G + +A +LF MP ++V W
Sbjct: 209 INGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWN 268
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVR 293
+++ G+ G+++ LFE+MPE+ + SW A+I G++ NG + L F +ML ++ V
Sbjct: 269 TVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVP 328
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAAS 351
ND T+V+ LSACA++GAL+ G VH Y + GLKG + G AL+DMYAKCG IE A
Sbjct: 329 PNDATLVTVLSACARLGALDLGKWVHVYAESS--GLKGNVYVGNALMDMYAKCGIIENAI 386
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
VF KDL++W +I GLA+H R A+ F +M +G +PDG F+ IL AC + G
Sbjct: 387 SVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMG 446
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
V+ +F SM DY I P ++H+ +V++L+R G++++A+ F+ KMP D VIW L
Sbjct: 447 LVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGL 506
Query: 472 FCACRTHKDTKIAKIALQSSCSLNLSIP 499
ACR +K+ ++A++ALQ L P
Sbjct: 507 LGACRIYKNVELAELALQRLIELEPKNP 534
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 179/509 (35%), Positives = 279/509 (54%), Gaps = 32/509 (6%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
S+ K + E H ISL+ S + L+++ AQII H + + +++S K +
Sbjct: 15 SAQKHPRWVLEEHFISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMA 74
Query: 81 YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
+A +FDHF + ++N + RG N+ ++ + F M + VRPN T+P V KS A
Sbjct: 75 HARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCA 134
Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------ 194
+ G +HC ++K G+E + FV L D+Y A+K+F E+N
Sbjct: 135 KIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTS 194
Query: 195 ---------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
V+LWN++++G +IG ++ A +LF MP ++ SW
Sbjct: 195 MISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSW 254
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGV 292
++++G+ GD++ +LFE+MPE+ V SW +I G++ NG + L F +ML D V
Sbjct: 255 NTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLV 314
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAA 350
ND T+V+ LSACA++GAL+ G VH Y + G KG+I G AL+DMY+KCG IE A
Sbjct: 315 VPNDATLVTVLSACARLGALDLGKWVHVYAA--TIGFKGSIYVGNALIDMYSKCGLIENA 372
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
VF KDL+TW +MI GLA HG A+ F +M +G +PDG F+ +L +C +
Sbjct: 373 MEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHL 432
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470
G V+ ++F+SM +Y I P ++H+ +V+L R G +D+A+ F+ +MP D VIW A
Sbjct: 433 GLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAA 492
Query: 471 LFCACRTHKDTKIAKIALQSSCSLNLSIP 499
L ACR +K+ +A++ALQ L P
Sbjct: 493 LLGACRIYKNIDLAELALQKLIVLEPKNP 521
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 327 bits (839), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 178/508 (35%), Positives = 278/508 (54%), Gaps = 32/508 (6%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
+ K + E H ISL+ S + L+++ AQII H + + +++S K + +
Sbjct: 58 TQKHPRWVLEEHFISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAH 117
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +FDHF + ++N + RG N+ ++ + F M + VRPN T+P V KS A
Sbjct: 118 ARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAK 177
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------- 194
+ G +HC ++K G+E + FV L D+Y A+K+F E+N
Sbjct: 178 IGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSM 237
Query: 195 --------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
V+LWN++++G +IG ++ A +LF MP ++ SW
Sbjct: 238 ISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWN 297
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVR 293
++++G+ GD++ +LFE+MPE+ V SW +I G++ NG + L F +ML D V
Sbjct: 298 TMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVV 357
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAAS 351
ND T+V+ LSACA++GAL+ G VH Y + G KG+I G AL+DMY+KCG IE A
Sbjct: 358 PNDATLVTVLSACARLGALDLGKWVHVYAA--TIGFKGSIYVGNALIDMYSKCGLIENAM 415
Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
VF KDL+TW +MI GLA HG A+ F +M +G +PDG F+ +L +C + G
Sbjct: 416 EVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLG 475
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
V+ ++F+SM +Y I P ++H+ +V+L R G +D+A+ F+ +MP D VIW AL
Sbjct: 476 LVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAAL 535
Query: 472 FCACRTHKDTKIAKIALQSSCSLNLSIP 499
ACR +K+ +A++ALQ L P
Sbjct: 536 LGACRIYKNIDLAELALQKLIVLEPKNP 563
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 520 | ||||||
| TAIR|locus:2010652 | 665 | AT1G04840 "AT1G04840" [Arabido | 0.892 | 0.697 | 0.490 | 4.4e-123 | |
| TAIR|locus:2019160 | 643 | AT1G74630 [Arabidopsis thalian | 0.863 | 0.698 | 0.319 | 1.2e-67 | |
| TAIR|locus:2117084 | 545 | AT4G18840 "AT4G18840" [Arabido | 0.930 | 0.888 | 0.317 | 2e-65 | |
| TAIR|locus:2150996 | 548 | AT5G15300 "AT5G15300" [Arabido | 0.871 | 0.826 | 0.322 | 1.4e-64 | |
| TAIR|locus:2094812 | 600 | AT3G29230 "AT3G29230" [Arabido | 0.609 | 0.528 | 0.362 | 9e-61 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.875 | 0.704 | 0.327 | 1.3e-59 | |
| TAIR|locus:2010012 | 474 | AT1G13410 "AT1G13410" [Arabido | 0.592 | 0.649 | 0.398 | 1.2e-58 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.544 | 0.291 | 0.342 | 1.3e-58 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.569 | 0.401 | 0.362 | 4.8e-58 | |
| TAIR|locus:2041198 | 681 | SLO1 "SLOW GROWTH 1" [Arabidop | 0.661 | 0.505 | 0.345 | 1.4e-57 |
| TAIR|locus:2010652 AT1G04840 "AT1G04840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1210 (431.0 bits), Expect = 4.4e-123, P = 4.4e-123
Identities = 228/465 (49%), Positives = 317/465 (68%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E+H ISLIH+ T LR +HAQI+ + SSR+ QL+S +SL KS DY+LSIF +
Sbjct: 29 ESHFISLIHACKDTASLRHVHAQILRRGVL-SSRVAAQLVSCSSLLKSPDYSLSIFRNSE 87
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFXXXXXXXXXXXXXXXX 150
+N + N LIRGL EN+ F+S + HF+ MLRL V+P+RLT+PF
Sbjct: 88 ERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRA 147
Query: 151 XHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
H +K+ V+ D+FVR+ L DMY + G+ + AF+VF+E+P++ K ES+L+WNVLING
Sbjct: 148 LHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYC 207
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ + A LF MP++N SW +LI G++ G+L +A +LFE MPEK VVSWT +ING
Sbjct: 208 RAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLING 267
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
FSQ G+ E A++ +F+ML+ G++ N++T+ + LSAC+K GAL +G+R+H YI N L
Sbjct: 268 FSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
AIGTALVDMYAKCG ++ A+ VF KD+L+WTAMI G A+HGR+ QAIQ F++MMY
Sbjct: 328 RAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY 387
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450
SG +PD VFLA+LTAC S +V L LNFFDSMR DY IEP++KH+ +VV+LL R G+++
Sbjct: 388 SGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLN 447
Query: 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495
+A + MP PD W AL+ AC+ HK + A+ Q+ L+
Sbjct: 448 EAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELD 492
|
|
| TAIR|locus:2019160 AT1G74630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
Identities = 146/457 (31%), Positives = 251/457 (54%)
Query: 33 HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFT 90
H +SL++S + + L QIH I + + S T +LI + S+ ++ YA + F
Sbjct: 7 HCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFP 66
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFXXXXXXXXXXXXXXX 149
+ +FN L+RG +E+ + ++ FV M+R V P+ ++ F
Sbjct: 67 EPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGF 126
Query: 150 XXHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
HC +K G+E FV L MY G A KVFDE + N ++ WN +I C
Sbjct: 127 QMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPN----LVAWNAVITAC 182
Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
+ + A E+F M +N SW ++ G+++ G+L+ A +F +MP + VSW+ MI
Sbjct: 183 FRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIV 242
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
G + NG ++ F ++ AG+ N+ ++ LSAC++ G+ E G +H ++ +
Sbjct: 243 GIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSW 302
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKD-LLTWTAMIWGLAIHGRYEQAIQYFKKM 388
++ AL+DMY++CGN+ A LVF +EK +++WT+MI GLA+HG+ E+A++ F +M
Sbjct: 303 IVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEM 362
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
G PDG F+++L AC ++G ++ ++F M+ Y IEP ++H+ +V+L R G+
Sbjct: 363 TAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGK 422
Query: 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAK 485
+ KA +FI +MP P ++W L AC +H + ++A+
Sbjct: 423 LQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAE 459
|
|
| TAIR|locus:2117084 AT4G18840 "AT4G18840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 157/495 (31%), Positives = 263/495 (53%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH---KSIDYALSIF 86
T I+S + S +++Q HA ++ LF + ++L++ A+ + K++ YA SI
Sbjct: 38 TPVPILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSIL 97
Query: 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFXXXXXXXXXXXX 146
+ N N +IR A +S + ++ F ML V P++ ++ F
Sbjct: 98 NRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFE 157
Query: 147 XXXXXHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
H L +KSG+ D FV L ++Y + G A KV D P ++ + WN L+
Sbjct: 158 EGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRD----AVSWNSLL 213
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
+ + G + +A LF M ++NV SW +I G+ G +K+A E+F+ MP + VVSW A
Sbjct: 214 SAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNA 273
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRAND-FTVVSALSACAKVGALEAGVRVHNYISCN 325
M+ ++ G + L +F +MLD D FT+VS LSACA +G+L G VH YI +
Sbjct: 274 MVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKH 333
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
++G + TALVDMY+KCG I+ A VF T ++D+ TW ++I L++HG + A++ F
Sbjct: 334 GIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIF 393
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
+M+Y G +P+G F+ +L+AC + G + A F+ M Y +EP+++H+ +V+LL R
Sbjct: 394 SEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGR 453
Query: 446 VGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505
+G++++A +N++P ++ +L AC+ + A+ LNL + Y
Sbjct: 454 MGKIEEAEELVNEIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLR--DSSGYA 511
Query: 506 QTFMQQKGDGRTWRE 520
Q DGR W +
Sbjct: 512 QMSNLYASDGR-WEK 525
|
|
| TAIR|locus:2150996 AT5G15300 "AT5G15300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
Identities = 150/465 (32%), Positives = 257/465 (55%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK--SIDYALSIFDHFTPKNL 94
L + + + L+QIHA ++++ L ++ + +LI SASL ++ YA +FD ++
Sbjct: 18 LWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDV 77
Query: 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFXXXXXXXXXXXXXXXXXHCL 154
I N ++RG A++ + +S + M + V P+R T+ F H
Sbjct: 78 SICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGK 137
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
+V+ G + +V+ L + G A ++FD++ + +K + W+ + +G +K G
Sbjct: 138 VVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHK----VAWSSMTSGYAKRGK 193
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
+ +A+ LF MP K+ +W +I G ++ ++ A ELF++ EK VV+W AMI+G+
Sbjct: 194 IDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNC 253
Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI----SCNDFGLK 330
G ++AL +F +M DAG + T++S LSACA +G LE G R+H YI S +
Sbjct: 254 GYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYV 313
Query: 331 GA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
G I AL+DMYAKCG+I+ A VF K++DL TW +I GLA+H E +I+ F++M
Sbjct: 314 GTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQ 372
Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449
P+ F+ ++ AC +SG+V +F MR Y IEP++KH+ +V++L R GQ+
Sbjct: 373 RLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQL 432
Query: 450 DKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494
++A F+ M P+ ++W L AC+ + + ++ K A + S+
Sbjct: 433 EEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSM 477
|
|
| TAIR|locus:2094812 AT3G29230 "AT3G29230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 117/323 (36%), Positives = 203/323 (62%)
Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
V+ G+ R A ++FDE P+++ ++ WN +++G ++ + KA ELF MP++N SW
Sbjct: 196 VKAGELRDARRLFDEMPQRD----LISWNTMLDGYARCREMSKAFELFEKMPERNTVSWS 251
Query: 235 SLIDGFMRKGDLKKAGELFEQMP--EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
+++ G+ + GD++ A +F++MP K VV+WT +I G+++ G ++A + QM+ +G+
Sbjct: 252 TMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGL 311
Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
+ + V+S L+AC + G L G+R+H+ + ++ G + AL+DMYAKCGN++ A
Sbjct: 312 KFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFD 371
Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
VF + +KDL++W M+ GL +HG ++AI+ F +M G PD F+A+L +C ++G
Sbjct: 372 VFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGL 431
Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472
+ +++F SM Y + P V+H+ +V+LL RVG++ +A+ + MP P+ VIWGAL
Sbjct: 432 IDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALL 491
Query: 473 CACRTHKDTKIAKIALQSSCSLN 495
ACR H + IAK L + L+
Sbjct: 492 GACRMHNEVDIAKEVLDNLVKLD 514
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 159/486 (32%), Positives = 248/486 (51%)
Query: 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII----LHNLFAS 62
N T +P N +S P+++ + + I++ + + L QIHA I + + A+
Sbjct: 2 NPTQTLFSPGGNSPAS-SPASH--PSSLFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAA 58
Query: 63 SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR 122
+ I +S H+ +DYA IF+ +N +N +IRG +E+ ++ I+ +F
Sbjct: 59 AEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEM 118
Query: 123 LS---VRPNRLTYPFXXXXXXXXXXXXXXXXXHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
+S V PNR T+P H L +K G D FV +L MYV G
Sbjct: 119 MSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGF 178
Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
+ A +F KN E ++ V+ + + G + W +IDG
Sbjct: 179 MKDARVLF----YKNIIEKDMV--VMTDRRKRDG---------------EIVLWNVMIDG 217
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
+MR GD K A LF++M ++ VVSW MI+G+S NG + A+ +F +M +R N T+
Sbjct: 218 YMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTL 277
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
VS L A +++G+LE G +H Y + + +G+AL+DMY+KCG IE A VF
Sbjct: 278 VSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPR 337
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
++++TW+AMI G AIHG+ AI F KM +G P ++ +LTAC + G V+ +
Sbjct: 338 ENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRY 397
Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHK 479
F M +EP ++H+ +V+LL R G +D+A FI MP PD VIW AL ACR
Sbjct: 398 FSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQG 457
Query: 480 DTKIAK 485
+ ++ K
Sbjct: 458 NVEMGK 463
|
|
| TAIR|locus:2010012 AT1G13410 "AT1G13410" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 125/314 (39%), Positives = 185/314 (58%)
Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
A + FD +PE++ ++LWN +I+G ++G + +A LF MP ++V SW ++++G+
Sbjct: 78 ARRYFDLSPERD----IVLWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYAN 133
Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVS 301
GD++ +F+ MPE+ V SW +I G++QNG + L F +M+D G V ND T+
Sbjct: 134 IGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTL 193
Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEK 360
LSACAK+GA + G VH Y + + AL+DMY KCG IE A VF K +
Sbjct: 194 VLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRR 253
Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
DL++W MI GLA HG +A+ F +M SG PD F+ +L AC + G V+ L +F
Sbjct: 254 DLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYF 313
Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKD 480
+SM D+ I P ++H VV+LLSR G + +A+ FINKMP D VIW L A + +K
Sbjct: 314 NSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKK 373
Query: 481 TKIAKIALQSSCSL 494
I ++AL+ L
Sbjct: 374 VDIGEVALEELIKL 387
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 1.3e-58, Sum P(2) = 1.3e-58
Identities = 99/289 (34%), Positives = 168/289 (58%)
Query: 205 LINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
L++ CSK+ LR E+ G + + +++ ++S++ ++ G+L LF+ M +K
Sbjct: 502 LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKS 561
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
+VSW +I G+ QNG ++AL +F QM+ G++ +++ AC+ + +L G H
Sbjct: 562 LVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHA 621
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
Y + I +L+DMYAK G+I +S VF KEK +W AMI G IHG ++
Sbjct: 622 YALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKE 681
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
AI+ F++M +G PD FL +LTAC +SG + L + D M+ + ++P++KH+ V+
Sbjct: 682 AIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVI 741
Query: 441 NLLSRVGQVDKALNFI-NKMPETPDFVIWGALFCACRTHKDTKIA-KIA 487
++L R GQ+DKAL + +M E D IW +L +CR H++ ++ K+A
Sbjct: 742 DMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVA 790
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 108/298 (36%), Positives = 182/298 (61%)
Query: 192 EKNK-SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
E+N+ + ++ L N +++ +K G + A LF M +K+ +W +++DG+ D + A
Sbjct: 259 EENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAR 318
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACAKV 309
E+ MP+K +V+W A+I+ + QNG+ +AL +F ++ L ++ N T+VS LSACA+V
Sbjct: 319 EVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQV 378
Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
GALE G +H+YI + + + +AL+ MY+KCG++E + VF +++D+ W+AMI
Sbjct: 379 GALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMI 438
Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
GLA+HG +A+ F KM + +P+G F + AC ++G V A + F M +Y I
Sbjct: 439 GGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGI 498
Query: 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487
P KH+ +V++L R G ++KA+ FI MP P +WGAL AC+ H + +A++A
Sbjct: 499 VPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMA 556
|
|
| TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 119/344 (34%), Positives = 195/344 (56%)
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
L+ GV+ D + L LG + ++ E ++ L N L++ SK G
Sbjct: 247 LMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCG 306
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
+ +A +F + K+ + SW ++I G+ R G L + +LF+ M EK VV W AMI G Q
Sbjct: 307 DIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQ 366
Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
+ ALA+F +M + + ++ T++ LSAC+++GAL+ G+ +H YI L A+
Sbjct: 367 AKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVAL 426
Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
GT+LVDMYAKCGNI A VF + ++ LT+TA+I GLA+HG AI YF +M+ +G
Sbjct: 427 GTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGI 486
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453
PD F+ +L+AC + G ++ ++F M+ + + P +KH++++V+LL R G +++A
Sbjct: 487 APDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEAD 546
Query: 454 NFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497
+ MP D +WGAL CR H + ++ + A + L+ S
Sbjct: 547 RLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPS 590
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9MAT2 | PPR10_ARATH | No assigned EC number | 0.5075 | 0.8923 | 0.6977 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | gw1.I.3444.1 | hypothetical protein (656 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 520 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-64 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-50 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-37 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-29 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 222 bits (567), Expect = 1e-64
Identities = 112/372 (30%), Positives = 185/372 (49%), Gaps = 43/372 (11%)
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
+ SG E D ++ + M+V+ G A ++FDE PE+N + W +I G G
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERN----LASWGTIIGGLVDAGN 204
Query: 215 LRKAVELFGMM-------PKKNVASWV--------------------------------S 235
R+A LF M + + +
Sbjct: 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
LID + + GD++ A +F+ MPEK V+W +M+ G++ +G +E+AL ++++M D+GV +
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
FT + +++ LE + H + F L TALVD+Y+K G +E A VF
Sbjct: 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
K+L++W A+I G HGR +A++ F++M+ G P+ FLA+L+AC YSG +
Sbjct: 385 RMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCAC 475
F SM ++ I+P H+ ++ LL R G +D+A I + P P +W AL AC
Sbjct: 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC 504
Query: 476 RTHKDTKIAKIA 487
R HK+ ++ ++A
Sbjct: 505 RIHKNLELGRLA 516
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 2e-50
Identities = 128/471 (27%), Positives = 210/471 (44%), Gaps = 88/471 (18%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +F ++L +NVL+ G A+ +F + + ML VRP+ T+P V ++
Sbjct: 140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
+ L+ GR +H +V+ G E D V L MYV+ G A VFD P ++ +
Sbjct: 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD----CIS 255
Query: 202 WNVLING-----------------------------------CSKIGYLRKAVELFGMMP 226
WN +I+G C +G R E+ G +
Sbjct: 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV 315
Query: 227 KK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
K +V+ SLI ++ G +A ++F +M K VSWTAMI+G+ +NG +KAL
Sbjct: 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALE 375
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+ M V ++ T+ S LSACA +G L+ GV++H + AL++MY+
Sbjct: 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KC I+ A VF EKD+++WT++I GL ++ R +A+ +F++M+ + +P+ +A
Sbjct: 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIA 494
Query: 403 ILTACWYS-----------------------------------GQVKLALNFFDSMRFDY 427
L+AC G++ A N F+S D
Sbjct: 495 ALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKD- 553
Query: 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET---PDFVIWGALFCAC 475
V +++ G+ A+ N+M E+ PD V + +L CAC
Sbjct: 554 -----VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 6e-37
Identities = 101/408 (24%), Positives = 174/408 (42%), Gaps = 78/408 (19%)
Query: 117 FVFMLRL-----SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171
+V + RL +V S SL + LG + L+
Sbjct: 89 YVALFRLCEWKRAVEEGSRVCSRALSSHPSLGV-RLGNAM------------------LS 129
Query: 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMM 225
M+V+ G+ A+ VF + PE++ + WNVL+ G +K GY +A+ L+ G+
Sbjct: 130 -MFVRFGELVHAWYVFGKMPERD----LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 226 PK-----------KNVASWV----------------------SLIDGFMRKGDLKKAGEL 252
P + +LI +++ GD+ A +
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
F++MP + +SW AMI+G+ +NGE + L +FF M + V + T+ S +SAC +G
Sbjct: 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304
Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
G +H Y+ F + ++ +L+ MY G+ A VF + KD ++WTAMI G
Sbjct: 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
+G ++A++ + M PD ++L+AC G + + + + I
Sbjct: 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS-- 422
Query: 433 VKHHTVVVNLL----SRVGQVDKALNFINKMPETPDFVIWGALFCACR 476
+ VV N L S+ +DKAL + +PE D + W ++ R
Sbjct: 423 ---YVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLR 466
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 9e-29
Identities = 83/325 (25%), Positives = 144/325 (44%), Gaps = 43/325 (13%)
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
A R A ++ + F + T ++ L+ C + +R ++
Sbjct: 99 ACGRHREALELFEILEAGCPFTLPAST-----------YDALVEACIALKSIRCVKAVYW 147
Query: 224 MM------PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
+ P + + + V L+ ++ G L A LF++MPE+ + SW +I G G
Sbjct: 148 HVESSGFEPDQYMMNRVLLM--HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNY 205
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH-----------NYISCND 326
+A A+F +M + G A T V L A A +G+ AG ++H ++SC
Sbjct: 206 REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC-- 263
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
AL+DMY+KCG+IE A VF EK + W +M+ G A+HG E+A+ +
Sbjct: 264 ---------ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYY 314
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
+M SG D F ++ ++ A + F + +T +V+L S+
Sbjct: 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKW 373
Query: 447 GQVDKALNFINKMPETPDFVIWGAL 471
G+++ A N ++MP + + W AL
Sbjct: 374 GRMEDARNVFDRMPRK-NLISWNAL 397
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 1e-15
Identities = 51/215 (23%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI-- 322
+ + +G+ E+AL + M + V ++ V+ C A+E G RV +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
S G++ +G A++ M+ + G + A VFG+ E+DL +W ++ G A G +++A+
Sbjct: 115 SHPSLGVR--LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL 172
Query: 383 QYFKKMMYSGTEPDGTVFLAILTAC-----WYSG-QVKLALNFFDSMRFDYFIEPSVKHH 436
+ +M+++G PD F +L C G +V + +RF + ++ V +
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV-----VRFGFELDVDVVN- 226
Query: 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471
++ + + G V A ++MP D + W A+
Sbjct: 227 -ALITMYVKCGDVVSARLVFDRMPRR-DCISWNAM 259
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 1e-12
Identities = 75/341 (21%), Positives = 136/341 (39%), Gaps = 35/341 (10%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+Q+H ++ + + ++ LI S I+ A +FD K +N ++ G A +
Sbjct: 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALH 303
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ + + + M V ++ T+ + + + L+LL + H ++++G D
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
L D+Y + G+ A VFD P KN ++ WN LI G G KAVE+F M
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRKN----LISWNALIAGYGNHGRGTKAVEMFERMIA 419
Query: 228 KNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKG-----VVSWTAMINGFSQNGEAE 278
+ VA ++++++ G ++ E+F+ M E + + MI + G +
Sbjct: 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG---- 334
+A AM +R F + AL R+H + + G
Sbjct: 480 EAYAM--------IRRAPFKPTVNMW-----AALLTACRIHKNLELGRLAAEKLYGMGPE 526
Query: 335 -----TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
L+++Y G A+ V K K L A W
Sbjct: 527 KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 1e-12
Identities = 70/337 (20%), Positives = 144/337 (42%), Gaps = 47/337 (13%)
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
GK F+VF E +V + LI+GC++ G + KA +G+M KNV
Sbjct: 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK------ 539
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG--VRAN 295
P++ V + A+I+ Q+G ++A + +M + +
Sbjct: 540 -------------------PDR--VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLV 353
TV + + ACA G ++ V+ I +++ +KG + T V+ ++ G+ + A +
Sbjct: 579 HITVGALMKACANAGQVDRAKEVYQMI--HEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636
Query: 354 FGETKEK----DLLTWTAMIWGLAIH-GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
+ + K+K D + ++A++ +A H G ++A + + G + + +++ AC
Sbjct: 637 YDDMKKKGVKPDEVFFSALV-DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695
Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE---TPDF 465
+ K AL ++ ++ + P+V ++ L Q+ KAL +++M P+
Sbjct: 696 NAKNWKKALELYEDIK-SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754
Query: 466 VIWGALFCACRTHKDTKIA----KIALQSSCSLNLSI 498
+ + L A D + A + NL +
Sbjct: 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 9e-09
Identities = 14/50 (28%), Positives = 34/50 (68%), Gaps = 4/50 (8%)
Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQ 273
+V ++ +LIDG+ +KG +++A +LF +M ++G+ +++ +I+G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 63/251 (25%), Positives = 112/251 (44%), Gaps = 18/251 (7%)
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING-FSQNGEAEKAL 281
G+ K+ ++ + +R G +K +L E M ++G++ + + F + + ++A+
Sbjct: 363 GVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAV 422
Query: 282 --AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTAL 337
A F L + F ++ +S CA ++ +RV + + GLK + T L
Sbjct: 423 KEAFRFAKLIRNPTLSTFNML--MSVCASSQDIDGALRVLRLV--QEAGLKADCKLYTTL 478
Query: 338 VDMYAKCGNIEAASLVFGETK----EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
+ AK G ++A VF E E ++ T+ A+I G A G+ +A + M
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS---RVGQVD 450
+PD VF A+++AC SG V A + M+ + P H V L+ GQVD
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAE--THPIDPDHITVGALMKACANAGQVD 596
Query: 451 KALNFINKMPE 461
+A + E
Sbjct: 597 RAKEVYQMIHE 607
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 1e-07
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
VV++ +I+G+ + G+ E+AL +F +M G++ N +T + K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 4e-06
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGF 240
V+ +N LI+G K G + +A++LF M K+ NV ++ LIDG
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
V++ ++I+G+ + G+ E+AL +F +M + GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 63/298 (21%), Positives = 134/298 (44%), Gaps = 25/298 (8%)
Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW-----VSLIDGFMRKGD 245
++ E + +N L+ + G ++ ++L M K+ + ++
Sbjct: 366 GKRKSPEYIDAYNRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRA 421
Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
+K+A + + + ++ +++ + + + + AL + + +AG++A+ + +S
Sbjct: 422 VKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST 481
Query: 306 CAKVGALEAGVRV-HNYISCNDFGLKGAIGT--ALVDMYAKCGNIEAASLVFGETKEK-- 360
CAK G ++A V H ++ G++ + T AL+D A+ G + A +G + K
Sbjct: 482 CAKSGKVDAMFEVFHEMVNA---GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538
Query: 361 --DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT--EPDGTVFLAILTACWYSGQVKLA 416
D + + A+I G ++A +M +PD A++ AC +GQV A
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598
Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE---TPDFVIWGAL 471
+ + +Y I+ + + +T+ VN S+ G D AL+ + M + PD V + AL
Sbjct: 599 KEVYQMIH-EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
V++ +I+G + G E+AL +F +M + G+ +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNV 230
+N LI+G K G L +A+ELF M +K V
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 5e-05
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
++ SLI G+ + G L++A ELF++M EKGV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
G+ P +V ++ +LIDG R G + +A EL ++M
Sbjct: 1 KGLKP--DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
D++T+ +I G G+ E+A++ F +M G +P+ + ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
T+ ++I G G+ E+A++ FK+M G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
++ +LIDG + G +++A ELF++M E+G+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
T+ A++ LA G + A+ ++M SG +P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNV 230
+N LI+G K G + +A+ELF M ++ +
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 520 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.85 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.79 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.73 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.73 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.69 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.64 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.61 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.6 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.57 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.55 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.54 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.54 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.52 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.52 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.5 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.48 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.41 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.4 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.37 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.37 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.34 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.34 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.28 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.26 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.26 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.24 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.22 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.2 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.2 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.19 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.18 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.15 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.14 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.08 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.06 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.03 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.02 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.01 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.01 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.01 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.98 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.98 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.96 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.91 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.91 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.91 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.91 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.89 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.89 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.83 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.82 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.8 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.8 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.79 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.75 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.71 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.71 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.69 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.69 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.68 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.64 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.62 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.59 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.58 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.57 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.56 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.55 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.52 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.51 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.5 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.49 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.48 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.48 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.44 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.4 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.38 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.32 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.32 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.31 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.31 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.26 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.26 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.23 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.22 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.2 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.18 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.18 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.17 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.13 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.11 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.1 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.07 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.07 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.06 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.05 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.05 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.0 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.0 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.94 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.91 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.88 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.88 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.87 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.83 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.82 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.82 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.78 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.77 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.76 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.75 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.74 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.73 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.73 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.72 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.72 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.7 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.69 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.66 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.63 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.63 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.6 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.6 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.59 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.58 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.55 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.54 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.52 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.52 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.51 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.49 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.48 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.45 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.43 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.42 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.41 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.39 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.38 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.38 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.38 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.37 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.29 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.27 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.26 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.25 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.21 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.19 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.19 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.18 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.12 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.1 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.1 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.1 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.08 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.04 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.02 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.94 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.93 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.92 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.86 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.83 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.83 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.8 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.8 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.79 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.77 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.69 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.67 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.63 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.61 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.58 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.47 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.44 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.43 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.37 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.37 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.36 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.29 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.29 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.28 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.28 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.26 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.18 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.17 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.15 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.05 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.04 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.04 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.96 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.92 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.89 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.79 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.74 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.72 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.57 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.55 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.49 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.45 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.43 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.4 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.3 | |
| PRK09687 | 280 | putative lyase; Provisional | 95.2 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.13 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.11 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.1 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.03 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.02 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 95.01 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.98 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.97 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 94.95 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 94.94 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.85 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.79 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.74 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.65 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.64 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 94.49 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.45 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.44 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.38 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.33 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.14 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.13 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.09 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.08 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.07 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.0 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.93 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.91 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.87 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 93.77 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 93.72 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.59 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.22 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.18 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.15 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.98 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.98 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.98 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.92 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.9 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.73 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.62 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.47 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.45 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.42 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.38 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.2 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.2 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.17 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.16 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.15 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 92.06 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.88 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.86 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.49 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.47 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.12 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.88 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.25 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.18 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.14 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.03 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.93 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.62 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.03 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 89.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.9 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.85 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.7 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 88.68 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.66 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 88.53 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.53 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.33 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.29 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.2 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.69 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 87.38 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.75 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.62 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.6 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.49 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 85.99 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 85.81 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.75 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 85.45 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 85.29 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 85.23 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.14 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 84.98 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 84.59 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 84.07 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.93 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.91 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.75 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.62 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 82.35 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.88 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 81.86 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 81.74 | |
| cd00280 | 200 | TRFH Telomeric Repeat binding Factor or TTAGGG Rep | 81.59 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 81.53 | |
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 81.2 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-73 Score=588.34 Aligned_cols=504 Identities=31% Similarity=0.501 Sum_probs=478.8
Q ss_pred cchhhhhhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHh
Q 010031 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 86 (520)
+++++|..+|..|...++.|+..+++.++..+...+++..+.+++..+.+.|+.|+..++++++.+|++.|+++.|.++|
T Consensus 166 g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 245 (857)
T PLN03077 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence 67888888888888888888888888888888888888888888888888899999999999999999999999999999
Q ss_pred cccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhH
Q 010031 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166 (520)
Q Consensus 87 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 166 (520)
++|+++|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+
T Consensus 246 ~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 246 DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred hcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC-------------------
Q 010031 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK------------------- 227 (520)
Q Consensus 167 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------- 227 (520)
|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence 9999999999999999999999997 45788888888888888888888888888742
Q ss_pred --------------------CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHH
Q 010031 228 --------------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287 (520)
Q Consensus 228 --------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 287 (520)
++..+|+.|+.+|++.|++++|.++|++|.++|+++|+.++.+|++.|+.++|+.+|++|
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345566888889999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH
Q 010031 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367 (520)
Q Consensus 288 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 367 (520)
.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+||+
T Consensus 482 ~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~ 559 (857)
T PLN03077 482 LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNI 559 (857)
T ss_pred Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHH
Confidence 86 5899999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccC
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (520)
+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+..|+.|+..+|+.++.+|.+.|
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999977899999999999999999999
Q ss_pred ChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 448 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
++++|.+++++|..+||..+|++|+.+|..+|+.+.|+...+++++++|+++..+..++++|...|+.+
T Consensus 640 ~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~ 708 (857)
T PLN03077 640 KLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD 708 (857)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChH
Confidence 999999999999889999999999999999999999999999999999999999999999999998854
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=547.21 Aligned_cols=499 Identities=26% Similarity=0.415 Sum_probs=443.9
Q ss_pred cchhhhhhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHh
Q 010031 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 86 (520)
+++++|..++..|...+.+|+..++..++..+...+.++.+.+++..+.+.+..++..++++++..|++.|+++.|.++|
T Consensus 65 g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f 144 (857)
T PLN03077 65 GQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVF 144 (857)
T ss_pred CCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhH
Q 010031 87 DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166 (520)
Q Consensus 87 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 166 (520)
++|++||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..+
T Consensus 145 ~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (857)
T PLN03077 145 GKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224 (857)
T ss_pred hcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999898888888
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC-------------------
Q 010031 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK------------------- 227 (520)
Q Consensus 167 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------- 227 (520)
++.|+.+|++.|+++.|.++|++|.. ||..+||.+|.+|++.|+.++|..+|++|.+
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Confidence 88888888888888888888888863 4666777777777777777777777666632
Q ss_pred --------------------CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHH
Q 010031 228 --------------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287 (520)
Q Consensus 228 --------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 287 (520)
||..+|++++.+|++.|++++|.++|++|..+|+.+|+.++.+|++.|++++|+++|++|
T Consensus 301 ~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 567788889999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH
Q 010031 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367 (520)
Q Consensus 288 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 367 (520)
.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+++.|+++|++.|++++|.++|++|.++|..+|+.
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~ 460 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTS 460 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccC
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (520)
++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+. +.|+.++..+++.|+.+|.++|
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~naLi~~y~k~G 538 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFLPNALLDLYVRCG 538 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCccceechHHHHHHHHcC
Confidence 99999999999999999999986 599999999999999999999999999999888 4678777777777777777777
Q ss_pred ChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCCCcchhHHHHhhhhhccC
Q 010031 448 QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCS--LNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 448 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~ 514 (520)
++++|.++|+++ +||..+|++++.+|.++|+.++|.++|++|.+ ..|+. .++..+..++.+.|+
T Consensus 539 ~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 539 RMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGM 604 (857)
T ss_pred CHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcCh
Confidence 777777777776 56777777777777777777777777777765 34543 334444455555554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-66 Score=522.94 Aligned_cols=484 Identities=14% Similarity=0.202 Sum_probs=447.7
Q ss_pred CCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCC-CCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHH
Q 010031 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL-FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103 (520)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 103 (520)
+++.+.+..+...+.++|+++.|.++++.|.+.|+ .++...++.++..|.+.|.+++|..+|+.|..|+..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45667788888888899999999999999999995 56778888999999999999999999999999999999999999
Q ss_pred HHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHH
Q 010031 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183 (520)
Q Consensus 104 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 183 (520)
|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010031 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP------KKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257 (520)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (520)
.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999995 3899999999999999999999999999998
Q ss_pred CCC----cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhH
Q 010031 258 EKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333 (520)
Q Consensus 258 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 333 (520)
+.+ ..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 654 5899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010031 334 GTALVDMYAKCGNIEAASLVFGETK----EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409 (520)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 409 (520)
|+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999985 489999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHh----cc-------------------CChHHHHHHHhhCCC---CC
Q 010031 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS----RV-------------------GQVDKALNFINKMPE---TP 463 (520)
Q Consensus 410 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~-------------------g~~~~A~~~~~~~~~---~~ 463 (520)
.|++++|.+++++|. +.|+.||..+|+.++..+. ++ +..++|..+|++|.. .|
T Consensus 767 ~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 767 KDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred CCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 999999999999998 5899999999999986543 22 224679999999986 69
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-CCCCCcchhHHHHhhh
Q 010031 464 DFVIWGALFCACRTHKDTKIAKIALQSSCS-LNLSIPQAMSYCQTFM 509 (520)
Q Consensus 464 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~ 509 (520)
|..+|+.++.++.+.+..+.+..+++.+.. -.+.+...|..+...+
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 999999999888888999988888877632 2333444555555443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-67 Score=528.23 Aligned_cols=453 Identities=25% Similarity=0.409 Sum_probs=438.8
Q ss_pred CCChHHHHHHHHHHhcCCChHHHHHHhcccCC-----CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHH
Q 010031 60 FASSRITTQLISSASLHKSIDYALSIFDHFTP-----KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134 (520)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 134 (520)
..+...+++++..+.+.|++++|+++|+.|.. ++..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 34556899999999999999999999998853 6889999999999999999999999999999999999999999
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCC
Q 010031 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214 (520)
Q Consensus 135 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 214 (520)
++..|++.|+++.|.++|+.|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999954 89999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010031 215 LRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290 (520)
Q Consensus 215 ~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 290 (520)
.+.+.+++..+.+ +|..+|++|+.+|++.|++++|.++|++|.++|+++|+.++.+|++.|++++|+++|++|.+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999887765 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHH
Q 010031 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370 (520)
Q Consensus 291 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 370 (520)
|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+++.|+++|+++|++++|.++|++|.++|..+||.||.
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChH
Q 010031 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450 (520)
Q Consensus 371 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (520)
+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.++.|+.|+..+|+.++.+|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999877899999999999999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 451 KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 451 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+|.+++++|..+|+..+|++++.+|..+|+++.|..++++++++.|+++..|..+..+|.+.|+.+
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHH
Confidence 999999999989999999999999999999999999999999999999999999999999999854
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-65 Score=516.05 Aligned_cols=485 Identities=15% Similarity=0.195 Sum_probs=451.9
Q ss_pred cchhhhhhcccccccCCC-CCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHH
Q 010031 7 NRLTTAIAPTTNIKSSHK-PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 85 (520)
+++++|..+|+.|...++ +++...+..++..+...|.++.|..++..|.. |+..+|+.++.+|++.|+++.|.++
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~l 459 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRV 459 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 788999999999998885 46667778899999999999999999988864 8999999999999999999999999
Q ss_pred hcccCC----CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCC
Q 010031 86 FDHFTP----KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161 (520)
Q Consensus 86 ~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 161 (520)
|+.|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.|+.
T Consensus 460 f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 999864 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHhccCCC--CCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC----CCHHHHHH
Q 010031 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPE--KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVS 235 (520)
Q Consensus 162 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ 235 (520)
||..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+ |+..+|+.
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 9999999999999999999999999999976 67899999999999999999999999999999987 78899999
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC----CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC
Q 010031 236 LIDGFMRKGDLKKAGELFEQMPE----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311 (520)
Q Consensus 236 l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 311 (520)
+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|+
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~ 699 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999985 57789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 010031 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE----KDLLTWTAMIWGLAIHGRYEQAIQYFKK 387 (520)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 387 (520)
+++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|.+++++
T Consensus 700 ~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998864 8999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHc----c-------------------CcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHh
Q 010031 388 MMYSGTEPDGTVFLAILTACWY----S-------------------GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444 (520)
Q Consensus 388 ~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (520)
|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|. ..|+.||..+|+.++.++.
T Consensus 780 M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~-~~Gi~Pd~~T~~~vL~cl~ 858 (1060)
T PLN03218 780 AKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI-SAGTLPTMEVLSQVLGCLQ 858 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHhc
Confidence 9999999999999999876542 1 12467999999999 5899999999999999999
Q ss_pred ccCChHHHHHHHhhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCCC
Q 010031 445 RVGQVDKALNFINKMPE---TPDFVIWGALFCACRTHKDTKIAKIALQSSCS--LNLSI 498 (520)
Q Consensus 445 ~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~ 498 (520)
+.+..+.+..+++.|.. .|+..+|++++.++.+. .++|..++++|.+ +.|+-
T Consensus 859 ~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 859 LPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred ccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 99999999999998865 47788999999998432 4689999999986 45653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=476.01 Aligned_cols=454 Identities=15% Similarity=0.144 Sum_probs=426.7
Q ss_pred CCHHHHHHHHHhccCchHHHHHHHHHHHhC-CCCChHHHHHHHHHHhcCCChHHHHHHhcccC----CCCcchHHHHHHH
Q 010031 29 ITETHIISLIHSSNSTKQLRQIHAQIILHN-LFASSRITTQLISSASLHKSIDYALSIFDHFT----PKNLHIFNVLIRG 103 (520)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~ 103 (520)
.+.+.++..+...|+++.|.++++.+...+ ..|+..+|+.++.++++.++++.|.+++..|. .||..+||.++..
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 477888999999999999999999998765 68999999999999999999999999998875 3899999999999
Q ss_pred HHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHH
Q 010031 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183 (520)
Q Consensus 104 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 183 (520)
|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|+.+.+
T Consensus 168 y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 9999999999999999975 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCC----CC
Q 010031 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP----EK 259 (520)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~ 259 (520)
.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.++|..+|++++.+|++.|+.++|.++|++|. .+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995 46
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 010031 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339 (520)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (520)
|..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|+++.|.++|++|. .+|..+|+.+|.
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~ 399 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIA 399 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999986 478899999999
Q ss_pred HHHhcCCHHHHHHHHhcCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCcHH
Q 010031 340 MYAKCGNIEAASLVFGETKE----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDGTVFLAILTACWYSGQVK 414 (520)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~ 414 (520)
+|++.|+.++|.++|++|.+ ||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 99999999999999999875 8999999999999999999999999999986 699999999999999999999999
Q ss_pred HHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010031 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSC 492 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 492 (520)
+|.+++++|. +.|+..+|+.++.+|...|+++.|..+++++.. .| +..+|..++..|.+.|++++|.+++++|.
T Consensus 480 eA~~~~~~~~----~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 480 EAYAMIRRAP----FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999998763 589999999999999999999999999998765 45 46799999999999999999999999997
Q ss_pred cC
Q 010031 493 SL 494 (520)
Q Consensus 493 ~~ 494 (520)
+.
T Consensus 556 ~~ 557 (697)
T PLN03081 556 RK 557 (697)
T ss_pred Hc
Confidence 54
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=295.98 Aligned_cols=500 Identities=12% Similarity=0.065 Sum_probs=312.2
Q ss_pred cchhhhhhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHh
Q 010031 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 86 (520)
+++++|...+..+.... +.+...+..+..++...|+++.|...++.+.+.. +.+...+..+...+...|++++|.+.|
T Consensus 343 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 420 (899)
T TIGR02917 343 GRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADL 420 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHH
Confidence 56666666666655433 3344455566666666666666666666665543 223444445555555555555555555
Q ss_pred cccCC-------------------------------------CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCc
Q 010031 87 DHFTP-------------------------------------KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129 (520)
Q Consensus 87 ~~~~~-------------------------------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 129 (520)
+.... .+...|..+...+...|++++|.+.|+++.+.. +.+.
T Consensus 421 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 499 (899)
T TIGR02917 421 ETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFF 499 (899)
T ss_pred HHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcH
Confidence 44322 233445555555555555555555555554422 1122
Q ss_pred ccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHH
Q 010031 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209 (520)
Q Consensus 130 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 209 (520)
..+..+...+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..+
T Consensus 500 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 577 (899)
T TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYY 577 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHH
Confidence 234444445555555555555555555543 2344455555555556666666666665555443 33445555566666
Q ss_pred HhcCChhHHHHHHhhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHH
Q 010031 210 SKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK---GVVSWTAMINGFSQNGEAEKALAM 283 (520)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 283 (520)
...|++++|..+++.+.+ .+...|..+..++...|++++|...|+++.+. +...+..+...+...|++++|...
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666666554 34556666666666666666666666665432 244566666666666777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC
Q 010031 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KD 361 (520)
Q Consensus 284 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~ 361 (520)
|+++.+.. +.+..++..+...+...|+++.|..+++.+.+.. +.+...+..+...+...|++++|.+.++.+.. |+
T Consensus 658 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 735 (899)
T TIGR02917 658 LKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS 735 (899)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 76666542 3345566666666666777777777777666554 34555666667777777777777777776654 44
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
..++..++.++...|++++|...++++.+.. +.+...+..+...|...|++++|.++|+++.+.. +++...++.++.
T Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~ 812 (899)
T TIGR02917 736 SQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAW 812 (899)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 4566667777777777777777777777642 2344577777777777888888888888877432 455667777788
Q ss_pred HHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCCc
Q 010031 442 LLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRT 517 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 517 (520)
.+.+.|+ .+|+..++++.. +.++.++..+...+...|++++|...++++++.+|+++.++..++.++.+.|+.+.
T Consensus 813 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 813 LYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE 889 (899)
T ss_pred HHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Confidence 8888887 778888877654 33455677777788888888888888888888888888888888888888887653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=293.48 Aligned_cols=498 Identities=15% Similarity=0.088 Sum_probs=299.9
Q ss_pred ccchhhhhhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHH
Q 010031 6 FNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85 (520)
Q Consensus 6 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 85 (520)
.++.++|...+....... |.+......+..++...|+++.|...+..+.... +.+...+..+...+.+.|++++|.+.
T Consensus 308 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 385 (899)
T TIGR02917 308 LGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEY 385 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 378889999998887654 5556677788899999999999999999988775 44677888899999999999999999
Q ss_pred hcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCC
Q 010031 86 FDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162 (520)
Q Consensus 86 ~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 162 (520)
|+++.+ .+...+..+...+...|++++|++.|+.+.+.+.. .......++..+.+.|++++|..+++.+.+.. +.
T Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 463 (899)
T TIGR02917 386 LAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PD 463 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CC
Confidence 997654 35567777888888888888888888888764321 22234445556666677777777776666532 34
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC---CCHHHHHHHHHH
Q 010031 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDG 239 (520)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~ 239 (520)
++.++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+ .+..++..+...
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 542 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGL 542 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 55566666666666677777766666665543 33445555566666666666666666666544 234455555555
Q ss_pred HHhcCCHHHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHH
Q 010031 240 FMRKGDLKKAGELFEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316 (520)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 316 (520)
+.+.|+.++|..+++++... +...+..++..+...|++++|..+++.+.+.. +.+..++..+..++...|+++.|.
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555554321 12334444455555555555555555554432 333444444555555555555555
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh----------------------------------cCCC---
Q 010031 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG----------------------------------ETKE--- 359 (520)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----------------------------------~~~~--- 359 (520)
..++.+.+.. +.+...+..+..++...|++++|..+++ .+.+
T Consensus 622 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 700 (899)
T TIGR02917 622 SSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP 700 (899)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 5555544332 1233344444444444555555555444 4433
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHH
Q 010031 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (520)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 439 (520)
.+...+..++..+...|++++|...|+++... .|+..++..+..++...|++++|.+.++++... .+.+...+..+
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~l 776 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTAL 776 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 13334444555555555555555555555552 333344455555555555555555555555532 13344555556
Q ss_pred HHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCC
Q 010031 440 VNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 515 (520)
+..|.+.|++++|.+.|+++.. ++++..+..+...+...|+ .+|+..++++++..|+++..+..++.++...|+.
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 853 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEA 853 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 6666666666666666665543 3345555566666666666 5566666666666666666666666666655553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-24 Score=230.21 Aligned_cols=495 Identities=9% Similarity=0.017 Sum_probs=356.4
Q ss_pred cchhhhhhcccccccCCCCCCCCCHHHH-HHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHH
Q 010031 7 NRLTTAIAPTTNIKSSHKPSNNITETHI-ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 85 (520)
++.++|...++...... |++......+ ..+....|+.+.|...++.+.+.. +.+......+...+...|+.++|++.
T Consensus 126 g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~ 203 (1157)
T PRK11447 126 GRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAV 203 (1157)
T ss_pred CCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 78888998888887654 3333211112 222233478889999999888875 33566777888888889999999988
Q ss_pred hcccCCCCc-----------------------chHH----------------------------------HHHHHHHhCC
Q 010031 86 FDHFTPKNL-----------------------HIFN----------------------------------VLIRGLAENS 108 (520)
Q Consensus 86 ~~~~~~~~~-----------------------~~~~----------------------------------~li~~~~~~~ 108 (520)
++++..... ..+. .....+...|
T Consensus 204 l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g 283 (1157)
T PRK11447 204 LEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSG 283 (1157)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCC
Confidence 876532100 0000 1123455678
Q ss_pred ChhHHHHHHHHhhhCCCCC-CcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCh-hHH------------HHHHHHH
Q 010031 109 HFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA-FVR------------VHLADMY 174 (520)
Q Consensus 109 ~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~------------~~l~~~~ 174 (520)
++++|+..|++..+. .| +...+..+..++.+.|++++|...|++..+....... ..+ ..+...+
T Consensus 284 ~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 284 QGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 888888888888773 34 5556777777888888888888888888775432111 111 1224456
Q ss_pred HhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--C-CHHHHHHHHHHHHhcCCHHHHHH
Q 010031 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--K-NVASWVSLIDGFMRKGDLKKAGE 251 (520)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~ 251 (520)
.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.|+++.+ | +...+..+...|. .++.++|..
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~ 439 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALA 439 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHH
Confidence 77888888888888887764 44566777778888888888888888888776 3 3445556666664 456788888
Q ss_pred HHhcCCCCC------------cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 010031 252 LFEQMPEKG------------VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319 (520)
Q Consensus 252 ~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (520)
+++.+.... ...+..+...+...|++++|++.|++.++.. +-+...+..+...+.+.|++++|...+
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 877665321 1234556777888999999999999998863 335667778888999999999999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----Ch---------hHHHHHHHHHHHcCCHHHHHHHHH
Q 010031 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK----DL---------LTWTAMIWGLAIHGRYEQAIQYFK 386 (520)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~~~a~~~~~ 386 (520)
+++.+... .++..+..+...+...++.++|...++.+... +. ..+..+...+...|+.++|..+++
T Consensus 519 ~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 519 RRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99887543 34455555556677889999999999987642 11 112345667888999999999887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-C
Q 010031 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-D 464 (520)
Q Consensus 387 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~ 464 (520)
. .+++...+..+...+...|++++|++.|+++.+.. +.+...+..++.+|...|++++|++.++.+.. .| +
T Consensus 598 ~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 598 Q-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred h-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 2 23455577788888999999999999999998532 44567888999999999999999999998765 33 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc------hhHHHHhhhhhccCCC
Q 010031 465 FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ------AMSYCQTFMQQKGDGR 516 (520)
Q Consensus 465 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~ 516 (520)
...+..+..++...|++++|.+.++++++..|+++. .+..++.++...|+.+
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~ 728 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQ 728 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHH
Confidence 566777888889999999999999999998877654 4556788888888754
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-24 Score=230.47 Aligned_cols=498 Identities=12% Similarity=0.021 Sum_probs=283.3
Q ss_pred cchhhhhhcccccccCCCCCCCCC----------------HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChH-HHHHH
Q 010031 7 NRLTTAIAPTTNIKSSHKPSNNIT----------------ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR-ITTQL 69 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 69 (520)
++.++|...++...... |.+... ....+.++...|+.+.|.+.++.+.+... |+.. .....
T Consensus 76 g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~ 153 (1157)
T PRK11447 76 GDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYW 153 (1157)
T ss_pred CCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHH
Confidence 78888998888887665 333322 23445678889999999999999987643 3322 22122
Q ss_pred HHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCC----------------CCcc
Q 010031 70 ISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR----------------PNRL 130 (520)
Q Consensus 70 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~----------------p~~~ 130 (520)
.......|+.++|++.|+++.. .+...+..+...+...|++++|++.|+++.+.... ++..
T Consensus 154 ~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~ 233 (1157)
T PRK11447 154 RLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDA 233 (1157)
T ss_pred HHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChh
Confidence 2223356999999999998864 35567888889999999999999999998653210 0000
Q ss_pred ---cHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHH
Q 010031 131 ---TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207 (520)
Q Consensus 131 ---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 207 (520)
.+...+..+-.......+...+....+....|+.. .......+...|++++|+..|++..+.. +.+..++..+..
T Consensus 234 ~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~ 311 (1157)
T PRK11447 234 SVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQ 311 (1157)
T ss_pred hHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 01111111111111222333333222211111111 1122334445555555555555554432 334445555555
Q ss_pred HHHhcCChhHHHHHHhhCCC--CCH---HHH------------HHHHHHHHhcCCHHHHHHHHhcCCCC---CcccHHHH
Q 010031 208 GCSKIGYLRKAVELFGMMPK--KNV---ASW------------VSLIDGFMRKGDLKKAGELFEQMPEK---GVVSWTAM 267 (520)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~--~~~---~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l 267 (520)
++.+.|++++|...|++..+ |+. ..+ ......+.+.|++++|...|+++... +...+..+
T Consensus 312 ~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~L 391 (1157)
T PRK11447 312 AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGL 391 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 55555555555555555443 211 001 11122344555555555555554432 12334445
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH------------------------------------------HHHHH
Q 010031 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVV------------------------------------------SALSA 305 (520)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------------------------------------~l~~~ 305 (520)
...+...|++++|++.|+++.+.. +.+...+. .+...
T Consensus 392 g~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~ 470 (1157)
T PRK11447 392 GDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEA 470 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 555555555555555555555432 11222222 23334
Q ss_pred hhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHH
Q 010031 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAI 382 (520)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~ 382 (520)
+...|++++|...+++..+... .++..+..+...|.+.|++++|...++++.+ | +...+..+...+...+++++|.
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 4455666666666666655432 2344555566666666666666666665533 2 3333333444445566666666
Q ss_pred HHHHHHHHCCCCCCHH---------HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHH
Q 010031 383 QYFKKMMYSGTEPDGT---------VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 383 ~~~~~~~~~~~~p~~~---------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (520)
..++.+......++.. .+..+...+...|+.++|.++++. .+.+...+..+...+.+.|++++|+
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHH
Confidence 6665543321111111 122334556667777777777662 1445566677888888889999999
Q ss_pred HHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 454 NFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 454 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+.++++.. +.+...+..++..+...|++++|+..++++++..|+++..+..++.++.+.|+.+
T Consensus 624 ~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 624 AAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHH
Confidence 88888665 3456788888888888899999999999888888888888888888888877744
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-24 Score=193.03 Aligned_cols=435 Identities=13% Similarity=0.085 Sum_probs=346.6
Q ss_pred HHHHHHhcCCChHHHHHHhcccCCCC---cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCC
Q 010031 68 QLISSASLHKSIDYALSIFDHFTPKN---LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144 (520)
Q Consensus 68 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 144 (520)
.+..-.-+.|++.+|.+.-...-..| ....-.+-..+.+..+.+....--....+. .+.-..+|..+...+...|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhch
Confidence 45555567888888887665443321 112222234455555555554433333331 22345688889999999999
Q ss_pred hhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhH-HHHHHHHHhcCChhHHHHHHh
Q 010031 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW-NVLINGCSKIGYLRKAVELFG 223 (520)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~ 223 (520)
++.|...++.+++... .....|..+..++...|+.+.|...|.+..+. .|+.... ..+...+-..|++++|...|.
T Consensus 132 ~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 132 LQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999998542 35678899999999999999999999888776 3443333 334455566899999999888
Q ss_pred hCCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-H
Q 010031 224 MMPK--KN-VASWVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN-D 296 (520)
Q Consensus 224 ~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~ 296 (520)
+..+ |. ...|+.|.-.+-..|++..|+..|++...-| ..+|-.|...|...+.+++|...|.+.... .|+ .
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A 286 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHA 286 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcch
Confidence 8776 43 3568888888889999999999999988766 457889999999999999999999988774 554 4
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHH
Q 010031 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLA 373 (520)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~ 373 (520)
..+..+...|...|.++.|+..|++.++... .-+..|+.|..++-..|++.+|...+.+... | ...+.+.|...+.
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5677777778899999999999999987652 3457899999999999999999999998776 3 5568899999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-hHHHHHHHHHhccCChHH
Q 010031 374 IHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQVDK 451 (520)
Q Consensus 374 ~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 451 (520)
..|.+++|..+|....+ +.|... ..+.|...|-+.|++++|+..+++..+ +.|+. ..|+.+...|-..|+.+.
T Consensus 366 E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHH
Confidence 99999999999999998 778766 889999999999999999999999874 68875 689999999999999999
Q ss_pred HHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 452 ALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 452 A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
|+..+.+... .|. ....+.|...|...|+..+|++.|+.++++.||.|.++..++.++.-.-+
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhc
Confidence 9999998765 555 45788899999999999999999999999999999999999988765444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-22 Score=201.59 Aligned_cols=486 Identities=11% Similarity=0.016 Sum_probs=327.4
Q ss_pred cchhhhhhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHh
Q 010031 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 86 (520)
++..+|...|+...... |.+...+..+++++...|+.+.|....++.++.. |+...+..++..+ ++.++|..++
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHH
Confidence 77788888888887666 5567788888999999999999999999888774 3434443333333 8888888988
Q ss_pred cccCC--C-CcchHHHHHHH--------HHhCCChhHHHHHHHHhhhCCCCCCcccHHHH-HHHHhccCChhhHHHHHHH
Q 010031 87 DHFTP--K-NLHIFNVLIRG--------LAENSHFQSCISHFVFMLRLSVRPNRLTYPFV-SKSVASLSLLSLGRGLHCL 154 (520)
Q Consensus 87 ~~~~~--~-~~~~~~~li~~--------~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~ 154 (520)
+++.. | +...+..+... |.+. ++|.+.++ .......|+..+.... .+.|...+++++|.+++..
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 88753 3 34455544444 5544 45555554 3332233445444444 7888899999999999999
Q ss_pred HHHhCCCCChhHHHHHHHHHHh-cCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC-----C
Q 010031 155 IVKSGVEYDAFVRVHLADMYVQ-LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK-----K 228 (520)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~ 228 (520)
+.+.+. .+......|..+|.. .++ +.+..+++. .++.++..+..++..+.+.|+.++|..+++++.. |
T Consensus 208 L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 208 ARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 998763 345556667777777 366 777777553 2235788888889999999999999998888763 2
Q ss_pred CHHHH------------------------------HHHHHH---------------------------------------
Q 010031 229 NVASW------------------------------VSLIDG--------------------------------------- 239 (520)
Q Consensus 229 ~~~~~------------------------------~~l~~~--------------------------------------- 239 (520)
...++ ..++..
T Consensus 282 ~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 282 QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEA 361 (987)
T ss_pred ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHH
Confidence 11111 000111
Q ss_pred ------------------------HHhcCCHHHHHHHHhcCCC-C-Cc----ccHHHHHHHHHhCCC---hhHHHHH---
Q 010031 240 ------------------------FMRKGDLKKAGELFEQMPE-K-GV----VSWTAMINGFSQNGE---AEKALAM--- 283 (520)
Q Consensus 240 ------------------------~~~~~~~~~a~~~~~~~~~-~-~~----~~~~~l~~~~~~~~~---~~~a~~~--- 283 (520)
..+.|+.++|.++|+.... + +. ....-++..|.+.+. ..++..+
T Consensus 362 ~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 362 LRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 2345666666666666544 1 11 122355666666655 3333222
Q ss_pred -------------------HHHHHHc-CC-CC--CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 010031 284 -------------------FFQMLDA-GV-RA--NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (520)
Q Consensus 284 -------------------~~~m~~~-~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (520)
+...... +. ++ +...+..+..++.. ++.++|...+....... |+......+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence 1111111 11 33 45566666666655 78888888777776554 444444444555
Q ss_pred HHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHH
Q 010031 341 YAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLAL 417 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~ 417 (520)
+...|++++|...|+.+.. ++...+..+..++.+.|+.++|...+++..+. .|+.. .+..+.......|++++|.
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHH
Confidence 5688889998888887654 34445666677788888888888888888874 34443 3333444455668888888
Q ss_pred HHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 010031 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495 (520)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 495 (520)
..+++..+ ..|+...+..+..++.+.|++++|+..+++... .| +...+..+..++...|++++|+..++++++.+
T Consensus 597 ~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 597 NDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 88888875 356777888888888888888888888888665 34 45677777778888888888888888888888
Q ss_pred CCCcchhHHHHhhhhhccCCC
Q 010031 496 LSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 496 p~~~~~~~~l~~~~~~~g~~~ 516 (520)
|+++.++..++.++...|+.+
T Consensus 674 P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHH
Confidence 888888888888888888854
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-20 Score=192.93 Aligned_cols=463 Identities=12% Similarity=-0.003 Sum_probs=328.2
Q ss_pred hccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC--CCcchHHHHHHHHHhCCChhHHHHHH
Q 010031 40 SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP--KNLHIFNVLIRGLAENSHFQSCISHF 117 (520)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~ 117 (520)
..|+.+.|...++.+++..+. +..++..+...|.+.|+.++|+..+++..+ |+-..|..++..+ +++.+|..++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 338999999999999988643 488889999999999999999999998765 3323333333333 8899999999
Q ss_pred HHhhhCCCCCCcc-cHHHHHHHH-----hccCChhhHHHHHHHHHHhCCCCChhHHHHH-HHHHHhcCChhHHHHHhccC
Q 010031 118 VFMLRLSVRPNRL-TYPFVSKSV-----ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHL-ADMYVQLGKTRGAFKVFDET 190 (520)
Q Consensus 118 ~~m~~~~~~p~~~-~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~ 190 (520)
+++.+. .|+.. .+..+.... ....+.++|.+.++ .......|++.+.... ...|.+.|+++.|++.+.++
T Consensus 132 e~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999984 35544 444444430 22344467777776 4443344445555545 89999999999999999999
Q ss_pred CCCCCCCCchhHHHHHHHHHh-cCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----Ccc--
Q 010031 191 PEKNKSESVLLWNVLINGCSK-IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-----GVV-- 262 (520)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-- 262 (520)
.+.+ +.+......|..+|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|.++++++... +..
T Consensus 209 ~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~ 286 (987)
T PRK09782 209 RQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSW 286 (987)
T ss_pred HhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHH
Confidence 9986 4555657777788887 477 88888887655578889999999999999999999999987521 000
Q ss_pred ----------------------------cHHHHHHHH-------------------------------------------
Q 010031 263 ----------------------------SWTAMINGF------------------------------------------- 271 (520)
Q Consensus 263 ----------------------------~~~~l~~~~------------------------------------------- 271 (520)
..-.++..+
T Consensus 287 ~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 366 (987)
T PRK09782 287 LYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLAR 366 (987)
T ss_pred HHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHH
Confidence 000011122
Q ss_pred --------------------HhCCChhHHHHHHHHHHHc-C-CCCCHHHHHHHHHHhhccCC---hHHHHHH--------
Q 010031 272 --------------------SQNGEAEKALAMFFQMLDA-G-VRANDFTVVSALSACAKVGA---LEAGVRV-------- 318 (520)
Q Consensus 272 --------------------~~~~~~~~a~~~~~~m~~~-~-~~p~~~~~~~l~~~~~~~~~---~~~a~~~-------- 318 (520)
.+.|+.++|.++|+..... + ..++......++..|.+.+. ..++..+
T Consensus 367 ~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 367 LLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 2244555555555555441 1 12223333456666665544 2222221
Q ss_pred --------------HHHHHHc-CC-CC--ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCH
Q 010031 319 --------------HNYISCN-DF-GL--KGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRY 378 (520)
Q Consensus 319 --------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 378 (520)
+...... +. ++ +...+..+..++.. ++.++|...+.+... |+......+...+...|++
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCH
Confidence 1222111 11 23 56777888888877 899999997776554 5443333445555789999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhh
Q 010031 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458 (520)
Q Consensus 379 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (520)
++|...|+++... .|+...+..+..++...|+.++|...+++..+.. ++....+..+...+.+.|++++|...+++
T Consensus 526 eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 526 ATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred HHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999998663 5555667777788899999999999999998521 23333444444455566999999999999
Q ss_pred CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 459 MPE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 459 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
... .|+...+..+..++.+.|++++|+..++++++++|+++.++..+|.++.+.|+.+
T Consensus 602 AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 602 SLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 776 6888899999999999999999999999999999999999999999999998854
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-23 Score=187.62 Aligned_cols=407 Identities=14% Similarity=0.126 Sum_probs=334.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 010031 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176 (520)
Q Consensus 97 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 176 (520)
...|..-..+.|++.+|.+.-...-+.+. .+......+-..+.+..+.+....--....+. .+.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 44566777889999999988766655331 22223333334455555666554444444432 22356789999999999
Q ss_pred cCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--CCHHHH-HHHHHHHHhcCCHHHHHHHH
Q 010031 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNVASW-VSLIDGFMRKGDLKKAGELF 253 (520)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~~~a~~~~ 253 (520)
.|++++|+..++.+.+.. +..+..|..+..++...|+.+.|...|.+..+ |+.... +.+...+...|++++|...|
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999999999874 55788999999999999999999999999988 554443 33445556689999999999
Q ss_pred hcCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCC
Q 010031 254 EQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN-DFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329 (520)
Q Consensus 254 ~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (520)
.+..+.+ .+.|+.|...+-..|+...|+..|++..+. .|+ ...|..+...|...+.++.|...|.+..... +.
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 8876544 578999999999999999999999999875 454 4678888889999999999999999887654 34
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 010031 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE--KD-LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILT 405 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~ 405 (520)
...++..+...|...|.+|-|+..+++..+ |+ ...|+.|..++-..|++.+|...|.+... +.|+.. +.+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 566777788889999999999999998876 44 36899999999999999999999999988 677766 8999999
Q ss_pred HHHccCcHHHHHHHHHHcHhhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHH
Q 010031 406 ACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTK 482 (520)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~ 482 (520)
.+...|.++.|..+|....+ +.|. ...++.|...|-..|++++|+..+++... +|. ...++.+...|-..|+.+
T Consensus 363 i~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 99999999999999999874 4555 46789999999999999999999999765 676 568999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 483 IAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 483 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.|++.+.+++..+|.-.+++..|+.+|+..|.
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence 99999999999999999999999999999987
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-20 Score=187.43 Aligned_cols=393 Identities=12% Similarity=0.024 Sum_probs=228.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 010031 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176 (520)
Q Consensus 97 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 176 (520)
+......+.+.|++++|++.|++..+ +.|+...|..+..++...|++++|.+.++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34455677778888888888888776 45676777777777888888888888888877754 2345577778888888
Q ss_pred cCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--CCHH-----------------------
Q 010031 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNVA----------------------- 231 (520)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----------------------- 231 (520)
.|++++|+.-|......+ ..+......++..+........+...++.-.. +...
T Consensus 207 lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 888888877665443321 11111111111111111111122222211111 0000
Q ss_pred -------HHHHHHHH---HHhcCCHHHHHHHHhcCCCCC------cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 010031 232 -------SWVSLIDG---FMRKGDLKKAGELFEQMPEKG------VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295 (520)
Q Consensus 232 -------~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 295 (520)
.+..+... ....+++++|.+.|+...+.+ ...|..+...+...|++++|+..|++.++.. +-+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 00111000 012345667777776655321 2356666666677777777777777766642 223
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHH
Q 010031 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGL 372 (520)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~ 372 (520)
...|..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...|++..+ | +...+..+..++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 4456666666667777777777777766553 23456666677777777777777777776654 2 345566666677
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-h-------HHHHHHHHH
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-K-------HHTVVVNLL 443 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~-------~~~~l~~~~ 443 (520)
.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|++.|++..+. .|+. . .++.....+
T Consensus 444 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHH
Confidence 7777777777777776663 343 346666666777777777777777776532 2221 1 111112223
Q ss_pred hccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 444 SRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
...|++++|.+++++... .|+ ...+..+...+...|++++|+..+++++++.+....
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 335677777777766433 333 345666667777777777777777777776665444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-19 Score=182.35 Aligned_cols=418 Identities=11% Similarity=0.036 Sum_probs=269.2
Q ss_pred CCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCC-cccHHHH
Q 010031 60 FASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN-RLTYPFV 135 (520)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l 135 (520)
+.++....-.+.+....|+.++|++++....+ .+...+..+...+...|++++|.++|++..+. .|+ ...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 33455555666667777888888877776653 23334777777777788888888888877763 243 3445556
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCCh
Q 010031 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215 (520)
Q Consensus 136 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 215 (520)
...+...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...|..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 666777788888888888777753 23444 6677777777788888888887777763 34455556666667777777
Q ss_pred hHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCCh---hHHHHHHHHHHHc-C
Q 010031 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA---EKALAMFFQMLDA-G 291 (520)
Q Consensus 216 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~-~ 291 (520)
+.|+..++.... ++.....+ ..+.+.....- .+.......+++ ++|+..++.+.+. .
T Consensus 167 e~Al~~l~~~~~-~p~~~~~l--------~~~~~~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 167 APALGAIDDANL-TPAEKRDL--------EADAAAELVRL----------SFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred HHHHHHHHhCCC-CHHHHHHH--------HHHHHHHHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 777777776665 11100000 00000000000 000001111222 5666666666643 1
Q ss_pred CCCCHH-HHH----HHHHHhhccCChHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC----
Q 010031 292 VRANDF-TVV----SALSACAKVGALEAGVRVHNYISCNDFG-LKGAIGTALVDMYAKCGNIEAASLVFGETKEKD---- 361 (520)
Q Consensus 292 ~~p~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 361 (520)
..|+.. .+. ..+.++...|++++|+..|+.+.+.+.. |+ .....+..+|...|++++|...|+.+.+.+
T Consensus 228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 122211 111 1123344557777777777777665422 22 122224667777777888777777665421
Q ss_pred ---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 362 ---LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-----------TEPDG---TVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 362 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
......+..++...|++++|..+++++.+.. -.|+. ..+..+...+...|++++|++.++++.
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1234556667788888888888888887642 12332 245566778889999999999999998
Q ss_pred hhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchh
Q 010031 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502 (520)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 502 (520)
... +.+...+..++.++...|++++|++.++++.. .|+ ...+...+..+...|++++|+..++++++..|+++.+.
T Consensus 387 ~~~--P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 387 YNA--PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 542 55567888999999999999999999999776 455 56777777889999999999999999999999999776
Q ss_pred HH
Q 010031 503 SY 504 (520)
Q Consensus 503 ~~ 504 (520)
..
T Consensus 465 ~~ 466 (765)
T PRK10049 465 RL 466 (765)
T ss_pred HH
Confidence 54
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-19 Score=179.56 Aligned_cols=275 Identities=14% Similarity=0.000 Sum_probs=211.9
Q ss_pred cCChhHHHHHHhhCCC-----C-CHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHH
Q 010031 212 IGYLRKAVELFGMMPK-----K-NVASWVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALA 282 (520)
Q Consensus 212 ~g~~~~a~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~ 282 (520)
.+++++|...|+...+ | ....+..+...+...|++++|...|++..+.+ ...|..+...+...|++++|+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 4689999999998875 2 34567888888999999999999999986543 4578888899999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---
Q 010031 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--- 359 (520)
Q Consensus 283 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 359 (520)
.|+++++.. +.+...+..+...+...|++++|...|++..+... .+...+..+..++.+.|++++|...|+...+
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999998864 44677888889999999999999999999988753 4566777888999999999999999998765
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC
Q 010031 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT--------VFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431 (520)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 431 (520)
.+...++.+...+...|++++|+..|++..+. .|+.. .++.....+...|++++|.+++++.... .|
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l---~p 539 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII---DP 539 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CC
Confidence 35678999999999999999999999999884 44311 1122222334469999999999998752 44
Q ss_pred C-hhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 432 S-VKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 432 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
+ ...+..++.++.+.|++++|++.|++... .+... .+ .....+.+|.++..++.+..|.-..
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~---e~----~~a~~~~~a~~~~~~~~~~~~~~~~ 603 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG---EL----VQAISYAEATRTQIQVQEDYPVLAS 603 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH---HH----HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4 45788899999999999999999998754 11111 11 1222445566665566555554333
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-20 Score=177.05 Aligned_cols=293 Identities=13% Similarity=0.120 Sum_probs=195.1
Q ss_pred HHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 010031 171 ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK-KNVASWVSLIDGFMRKGDLKKA 249 (520)
Q Consensus 171 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a 249 (520)
...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+.. |+.....
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--------------- 105 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ--------------- 105 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH---------------
Confidence 344556677777777777776653 33455666666666677777777766666554 1100000
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCC
Q 010031 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329 (520)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (520)
....+..++..|...|++++|..+|+++.+.. +++..++..++..+.+.|++++|...++.+.+.+..+
T Consensus 106 ----------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (389)
T PRK11788 106 ----------RLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS 174 (389)
T ss_pred ----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc
Confidence 01234445555555566666666666555432 3344555555666666666666666666655543222
Q ss_pred C----hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010031 330 K----GAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402 (520)
Q Consensus 330 ~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 402 (520)
. ...+..+...+.+.|++++|...++++.+ | +...+..++..+.+.|++++|.++++++.+.+......++..
T Consensus 175 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 254 (389)
T PRK11788 175 LRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPK 254 (389)
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHH
Confidence 1 11334556666777777777777776654 2 345677788888999999999999999987432222346788
Q ss_pred HHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHH---c
Q 010031 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACRT---H 478 (520)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~---~ 478 (520)
++.+|...|++++|.+.++++.+. .|+...+..++..+.+.|++++|.++++++.. .|+...+..++..+.. .
T Consensus 255 l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 255 LMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCC
Confidence 888999999999999999998753 56766778899999999999999999988665 5888888888877654 5
Q ss_pred CCHHHHHHHHHHHhc
Q 010031 479 KDTKIAKIALQSSCS 493 (520)
Q Consensus 479 g~~~~A~~~~~~~~~ 493 (520)
|+.+++...++++++
T Consensus 332 g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 332 GRAKESLLLLRDLVG 346 (389)
T ss_pred ccchhHHHHHHHHHH
Confidence 688888888888875
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-20 Score=176.60 Aligned_cols=304 Identities=13% Similarity=0.047 Sum_probs=166.6
Q ss_pred HHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcC
Q 010031 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD---AFVRVHLADMYVQLG 178 (520)
Q Consensus 102 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 178 (520)
..+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+.+.+..++ ..++..++..|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344556677777777777766421 2333556666666666777777777666665321111 134555666666666
Q ss_pred ChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 010031 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258 (520)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 258 (520)
+++.|..+|+++.+.. +++..++..++..+.+.|++++|...++.+.+.+.......
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 6666666666665542 34455566666666666666666666655543100000000
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 010031 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338 (520)
Q Consensus 259 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (520)
....+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|..+++++.+.+......++..++
T Consensus 179 -~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 256 (389)
T PRK11788 179 -IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLM 256 (389)
T ss_pred -HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHH
Confidence 00123344455556666666666666665542 2233445555555666666666666666665443222234445555
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCcH
Q 010031 339 DMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY---SGQV 413 (520)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~ 413 (520)
.+|...|++++|...++.+.+ |+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+.
T Consensus 257 ~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~ 334 (389)
T PRK11788 257 ECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRA 334 (389)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccc
Confidence 566666666666666555443 4444445566666666777777777766665 35666666666655443 3466
Q ss_pred HHHHHHHHHcHhhcCCCCChh
Q 010031 414 KLALNFFDSMRFDYFIEPSVK 434 (520)
Q Consensus 414 ~~a~~~~~~~~~~~~~~~~~~ 434 (520)
+++..+++++.+ .++.|++.
T Consensus 335 ~~a~~~~~~~~~-~~~~~~p~ 354 (389)
T PRK11788 335 KESLLLLRDLVG-EQLKRKPR 354 (389)
T ss_pred hhHHHHHHHHHH-HHHhCCCC
Confidence 666666666663 33444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-19 Score=180.11 Aligned_cols=348 Identities=12% Similarity=0.012 Sum_probs=224.0
Q ss_pred cHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHH
Q 010031 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210 (520)
Q Consensus 131 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 210 (520)
-...++..+.+.|+++.|..+++........ +......++......|+++.|...++++.+.. +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3445666777888888888888888776533 34455555666677888888888888887764 555667777778888
Q ss_pred hcCChhHHHHHHhhCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-cccHHHHHHHHHhCCChhHHHHHH
Q 010031 211 KIGYLRKAVELFGMMPK--K-NVASWVSLIDGFMRKGDLKKAGELFEQMPE--KG-VVSWTAMINGFSQNGEAEKALAMF 284 (520)
Q Consensus 211 ~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~ 284 (520)
..|++++|...++++.+ | +...+..+...+...|++++|...++.+.. ++ ...+..+ ..+...|++++|...+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 88888888888887766 3 455667777777788888888777776532 22 2223222 3466777888888777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH----HHHHHhcCCC-
Q 010031 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA----ASLVFGETKE- 359 (520)
Q Consensus 285 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~- 359 (520)
+.+......++......+..++...|++++|...++.+.+.. +.+...+..+...|...|++++ |...|++..+
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 777665433344444445566677777777777777777654 2345566667777777777764 5666665554
Q ss_pred -C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-hH
Q 010031 360 -K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KH 435 (520)
Q Consensus 360 -~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~ 435 (520)
| +...+..+...+...|++++|...+++..+ ..|+.. .+..+..++...|++++|...++++... .|+. ..
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~ 354 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKW 354 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHH
Confidence 2 445666667777777777777777777766 344433 5555666667777777777777766642 3333 23
Q ss_pred HHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 436 HTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
+..+..++...|+.++|++.+++... .|+.. ..++++|...+.++++..+..
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~~~-----------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARASHL-----------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-----------hhhHHHHHHHHHHHHHhcCCc
Confidence 33345566677777777777776543 23322 234445666666666544433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-17 Score=165.00 Aligned_cols=445 Identities=10% Similarity=0.033 Sum_probs=249.2
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcch-HHHH--HHHHHhCCCh
Q 010031 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI-FNVL--IRGLAENSHF 110 (520)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~l--i~~~~~~~~~ 110 (520)
-+-+..+.|+...|...+.++.+......+.++ .++..+...|+.++|+..+++...|+... +..+ ...+...|++
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 333344445555555555555544321111222 44444555555555555555544432222 2222 2244444555
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccC
Q 010031 111 QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190 (520)
Q Consensus 111 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 190 (520)
++|+++|+++.+... -+...+..++..+...++.++|.+.++.+.+.. |+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 555555555554221 122333344444455555555555555554432 33333333333333334443455555555
Q ss_pred CCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHH
Q 010031 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK-KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269 (520)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 269 (520)
.+.. +.+...+..+..++.+.|-...|.++..+-.. -+.....-+ +.+.|.+..+....+.
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~~~~--------- 257 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAVLPT--------- 257 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhccccc---------
Confidence 5542 33344444455555555555555554444332 000000000 0000111110000000
Q ss_pred HHHhCCC---hhHHHHHHHHHHHc-CCCCCH-HH----HHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 010031 270 GFSQNGE---AEKALAMFFQMLDA-GVRAND-FT----VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (520)
Q Consensus 270 ~~~~~~~---~~~a~~~~~~m~~~-~~~p~~-~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (520)
-....+ .+.|+.-++.+... +..|.. .- ..-.+-++...+++..+++.++.+...+.+....+-..+.++
T Consensus 258 -~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 258 -RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred -ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 000112 23444555554442 112321 11 122344667778888888888888777765556677778888
Q ss_pred HHhcCCHHHHHHHHhcCCCC---------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------CCCCHH
Q 010031 341 YAKCGNIEAASLVFGETKEK---------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-------------TEPDGT 398 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~p~~~ 398 (520)
|...+++++|..+++.+..+ +......|..++...+++++|..+++++.+.- ..||..
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 88888888888888876442 22234667888888888888888888887731 122333
Q ss_pred -HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHH
Q 010031 399 -VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCAC 475 (520)
Q Consensus 399 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~ 475 (520)
.+..++..+...|++.+|++.++++.... |-|..+...+..++...|++.+|.+.++.... .| +..+....+.++
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 44555667888999999999999997532 56778888999999999999999999987654 34 456777888889
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 476 RTHKDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 476 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
...|++.+|..+.+++++..|+++....
T Consensus 495 l~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 495 MALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 9999999999999999999999997654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-19 Score=168.83 Aligned_cols=443 Identities=14% Similarity=0.060 Sum_probs=295.2
Q ss_pred CChHHHHHHHHHHhcCCChHHHHHHhcccCCCC------cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcc--cH
Q 010031 61 ASSRITTQLISSASLHKSIDYALSIFDHFTPKN------LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL--TY 132 (520)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~ 132 (520)
.++.+.+.|...|--.|+++.+..+...+...+ ..+|-.+.+++-..|++++|...|.+..+. .|+.+ .+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 355566666666666666666666666554321 234556666777777777777777666553 24433 23
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----ChhHHHHHhccCCCCCCCCCchhHHHHHHH
Q 010031 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG----KTRGAFKVFDETPEKNKSESVLLWNVLING 208 (520)
Q Consensus 133 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 208 (520)
--+...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..+.. +.|...|-.+...
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 335566667777777777777776643 234555555556665554 3455666665555442 4456666666555
Q ss_pred HHhcCCh------hHHHHHHhhCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-------Cc------ccHHHHH
Q 010031 209 CSKIGYL------RKAVELFGMMPK-KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-------GV------VSWTAMI 268 (520)
Q Consensus 209 ~~~~g~~------~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~------~~~~~l~ 268 (520)
+....-+ ..|..++..-.. +.+...|.+...+...|+++.|...|+..... |. .+-..+.
T Consensus 424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 5443322 223322222222 56666777777777888888888877765432 11 1233455
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 010031 269 NGFSQNGEAEKALAMFFQMLDAGVRANDF-TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347 (520)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 347 (520)
..+-..++.+.|.+.|..+.+. .|.-+ .|..+.......+...+|...++.....+ ..++..++.+...+.+...+
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhh
Confidence 5666677788888888887775 34332 33333322334467778888888877554 45677777777788888888
Q ss_pred HHHHHHHhcCCC-----CChhHHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc
Q 010031 348 EAASLVFGETKE-----KDLLTWTAMIWGLAI------------HGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWY 409 (520)
Q Consensus 348 ~~a~~~~~~~~~-----~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 409 (520)
..|.+-|..+.+ +|..+.-.|...|.. .+..+.|+++|.+.+.. .| |...-+.+.-.++.
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAE 658 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhhhhhh
Confidence 888775544433 355555555554432 34577899999998884 44 45577777778889
Q ss_pred cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC----CCCHHHHHHHHHHHHHcCCHHHHH
Q 010031 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE----TPDFVIWGALFCACRTHKDTKIAK 485 (520)
Q Consensus 410 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 485 (520)
.|++..|..+|.++.+.. .-...+|-.+.++|..+|++-.|+++|+.... +.+..+...|..++.+.|.+.+|.
T Consensus 659 kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred ccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999999998643 33455778899999999999999999998543 457888999999999999999999
Q ss_pred HHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 486 IALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 486 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
+.+..++.+.|.++...+.++.+..+.+.
T Consensus 737 ~~ll~a~~~~p~~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 737 EALLKARHLAPSNTSVKFNLALVLKKLAE 765 (1018)
T ss_pred HHHHHHHHhCCccchHHhHHHHHHHHHHH
Confidence 99999999999999999999998887543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-18 Score=174.37 Aligned_cols=345 Identities=10% Similarity=-0.035 Sum_probs=251.7
Q ss_pred HhcCCChHHHHHHhcccCC------CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChh
Q 010031 73 ASLHKSIDYALSIFDHFTP------KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146 (520)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 146 (520)
+.++.+++.-.-.|+..++ .+..-.-.++..+.+.|++++|+.+++........ +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 3466777777767766554 23344555677788888999999888888774332 2334445556666788889
Q ss_pred hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCC
Q 010031 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226 (520)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 226 (520)
+|...++.+.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999888888864 2356677788888888899999988888887763 4556777888888888899888888887765
Q ss_pred C--CCH-HHHHHHHHHHHhcCCHHHHHHHHhcCCCCC----cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 010031 227 K--KNV-ASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299 (520)
Q Consensus 227 ~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 299 (520)
. |+. ..+..+ ..+...|++++|...++.+.+.+ ...+..+...+...|++++|+..++++.... +.+...+
T Consensus 172 ~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 172 QEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred HhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 4 333 333333 34777888888888888865532 2234455677888888999998888888764 3456667
Q ss_pred HHHHHHhhccCChHH----HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHH
Q 010031 300 VSALSACAKVGALEA----GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGL 372 (520)
Q Consensus 300 ~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~ 372 (520)
..+...+...|++++ |...++.+.+... .+...+..+...+...|++++|...+++... | +...+..+..++
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777788888888875 7888888877653 4667778888888888999998888887665 3 445677788888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEPDGTV-FLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
...|++++|...|+++... .|+... +..+..++...|+.++|...|++..+
T Consensus 329 ~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 329 RQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999888888873 555543 33445677888899999998888875
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-18 Score=171.85 Aligned_cols=421 Identities=10% Similarity=0.003 Sum_probs=274.0
Q ss_pred hhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhccc---
Q 010031 13 IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF--- 89 (520)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--- 89 (520)
++.++. ...-+.++.-..-.+++....|+.+.|..++....... +.+...+..+...+...|++++|.++|+..
T Consensus 2 ~~~~~~--~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ--ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh--hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344445 22336667777788999999999999999999988733 445567888999999999999999999984
Q ss_pred CCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHH
Q 010031 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169 (520)
Q Consensus 90 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 169 (520)
.+.+...+..+...+...|++++|+..+++..+. .|+...+..+..++...|+.++|...++++.+... .+...+..
T Consensus 79 ~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~ 155 (765)
T PRK10049 79 EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTE 155 (765)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 3456677888889999999999999999999885 34333377777888999999999999999999653 35566677
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCCCCCc------hhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhc
Q 010031 170 LADMYVQLGKTRGAFKVFDETPEKNKSESV------LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243 (520)
Q Consensus 170 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 243 (520)
+...+...|..+.|+..++.... .|+. .....++......+. ...
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~--------------------------~~~ 206 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR--------------------------SEK 206 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc--------------------------Chh
Confidence 88888899999999999988775 2221 011111111111110 000
Q ss_pred CCH---HHHHHHHhcCCC-----CCcc-cH----HHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhcc
Q 010031 244 GDL---KKAGELFEQMPE-----KGVV-SW----TAMINGFSQNGEAEKALAMFFQMLDAGVR-ANDFTVVSALSACAKV 309 (520)
Q Consensus 244 ~~~---~~a~~~~~~~~~-----~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~ 309 (520)
+++ ++|+..++.+.+ |+.. .+ ...+..+...|++++|+..|+++.+.+.+ |+. ....+..++...
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~ 285 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKL 285 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhc
Confidence 111 333333333321 1100 00 00122334455666666666666554321 221 111234455566
Q ss_pred CChHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---------------C---hhHHHHH
Q 010031 310 GALEAGVRVHNYISCNDFGL---KGAIGTALVDMYAKCGNIEAASLVFGETKEK---------------D---LLTWTAM 368 (520)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~---~~~~~~l 368 (520)
|++++|...|+.+.+..... .......+..++...|++++|.+.++.+... + ...+..+
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 66666666666655432111 1123344444556666666666666554431 1 1244567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-hhHHHHHHHHHhcc
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRV 446 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 446 (520)
...+...|++++|+..++++... .|+ ...+..+...+...|++++|++.++++... .|+ ...+...+..+.+.
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l---~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVL---EPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHHHh
Confidence 77888889999999999998874 454 447788888888899999999999988752 454 55666777788889
Q ss_pred CChHHHHHHHhhCCC-CCCHHHHHHHHHH
Q 010031 447 GQVDKALNFINKMPE-TPDFVIWGALFCA 474 (520)
Q Consensus 447 g~~~~A~~~~~~~~~-~~~~~~~~~l~~~ 474 (520)
|++++|..+++++.. .|+......+-..
T Consensus 441 ~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 441 QEWRQMDVLTDDVVAREPQDPGVQRLARA 469 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999988765 4665544444333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-18 Score=163.12 Aligned_cols=500 Identities=13% Similarity=0.050 Sum_probs=290.7
Q ss_pred hhhhhhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhC--CCCChHHHHHHHHHHhcCCChHHHHHHh
Q 010031 9 LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHN--LFASSRITTQLISSASLHKSIDYALSIF 86 (520)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 86 (520)
++.|...|....+.+ |+|.+.+..-+.+.-..+++..|..+|..+.... ..||+.+ .+-.++.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 467777777776665 6676666666677777778888888888755443 3445433 2334555677777777777
Q ss_pred cccCCCCcchHHHHHHHH---H---hCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 010031 87 DHFTPKNLHIFNVLIRGL---A---ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160 (520)
Q Consensus 87 ~~~~~~~~~~~~~li~~~---~---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 160 (520)
.+..+-|+..-+.++... . ....+..++.++...-..+ .-++...+.|...|.-.|++..+..+...++....
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 666554443333322211 1 1123344444444443321 12444555555555666666666666665555331
Q ss_pred C--CChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--C-CHHHHHH
Q 010031 161 E--YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--K-NVASWVS 235 (520)
Q Consensus 161 ~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ 235 (520)
. .-...|-.+.++|-..|++++|...|.+..+..-..-+..+-.+...+.+.|+++.+...|+.+.+ | +..+...
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence 1 011234455666666666666666665554432111122333455556666666666666655554 2 2334444
Q ss_pred HHHHHHhcC----CHHHHHHHHhcCCCC-----------------------------------------CcccHHHHHHH
Q 010031 236 LIDGFMRKG----DLKKAGELFEQMPEK-----------------------------------------GVVSWTAMING 270 (520)
Q Consensus 236 l~~~~~~~~----~~~~a~~~~~~~~~~-----------------------------------------~~~~~~~l~~~ 270 (520)
|...|...+ ..+.|..++.+...+ .+...|.+...
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 444444332 233444444433322 23344555555
Q ss_pred HHhCCChhHHHHHHHHHHHc---CCCCCH------HHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 010031 271 FSQNGEAEKALAMFFQMLDA---GVRAND------FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (520)
Q Consensus 271 ~~~~~~~~~a~~~~~~m~~~---~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (520)
+...|++.+|...|...... ...++. .+-..+....-..++++.|.+.|..+.+..+ .-...|..++...
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMA 540 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHH
Confidence 55566666666666555433 011111 1222233344445566666666666654431 1122222222222
Q ss_pred HhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHc--------
Q 010031 342 AKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWY-------- 409 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~-------- 409 (520)
...++..+|...+..+.. .++..+..+...+.+...+.-|.+-|+...+.- ..+|..+...|.+.|..
T Consensus 541 ~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN 620 (1018)
T ss_pred HhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence 233556666666665554 455666667767777777777777666554431 23566666666665543
Q ss_pred ----cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHH
Q 010031 410 ----SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKI 483 (520)
Q Consensus 410 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 483 (520)
.+..++|+++|.++.+. -+.|...-|-+.-+++..|++.+|..+|.++.+ .....+|..+..+|...|++..
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRL 698 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHH
Confidence 24678899999988752 255667778899999999999999999999876 3456789999999999999999
Q ss_pred HHHHHHHHhcC--CCCCcchhHHHHhhhhhccCC
Q 010031 484 AKIALQSSCSL--NLSIPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 484 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~ 515 (520)
|+++|+..++. ..+++..+.+|+.++.+.|+.
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 99999999874 457889999999999998873
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.1e-16 Score=141.23 Aligned_cols=435 Identities=13% Similarity=0.069 Sum_probs=343.8
Q ss_pred HHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhh----hCCCCCCcccHHHHHHHHhccCC
Q 010031 72 SASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFML----RLSVRPNRLTYPFVSKSVASLSL 144 (520)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~----~~~~~p~~~~~~~ll~~~~~~~~ 144 (520)
+|++..-++.|.++++...+ .+...|-+....--.+|+.+...++..+-. ..|+..+...|..=...|-..|.
T Consensus 415 AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 44555566777777766543 466667666666666777777777766543 35777777777777777777788
Q ss_pred hhhHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHH
Q 010031 145 LSLGRGLHCLIVKSGVEYD--AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222 (520)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 222 (520)
.-.+..+....+..|++.. ..+|+.-...|.+.+.++-|+.+|...++- .+-+...|......--..|..+....++
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 8888888888877776432 347888888888888888888888887765 3556777777777767788888888888
Q ss_pred hhCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 010031 223 GMMPK--K-NVASWVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296 (520)
Q Consensus 223 ~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 296 (520)
+++.. | ....|......+...|++..|..++..+-+.+ ...|-+-+.....+.++++|..+|.+.... .|+.
T Consensus 574 qkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTe 651 (913)
T KOG0495|consen 574 QKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTE 651 (913)
T ss_pred HHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcc
Confidence 88776 3 44566777778888899999999988876533 456888888888999999999999988774 5666
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHH
Q 010031 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLA 373 (520)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~ 373 (520)
..|..-+..---.++.++|.+++++.++. ++.-...|..+.+.+.+.++++.|.+.|..-.+ | .+..|-.|...-.
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 66666666666678899999999988865 334456788889999999999999999988776 4 4457888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHH
Q 010031 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 374 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (520)
+.|++-.|..++++.+-.+. -+...|...|+.-.+.|+.+.|..++.+..++ ++.+...|..-|....+.++-..+.
T Consensus 731 k~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHH
Confidence 89999999999999887542 25568999999999999999999999998865 4667778888888888888888888
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCC
Q 010031 454 NFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 454 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 515 (520)
..+++... |+.+..++...+....++++|...|+++++.+|++.++|.+.-.++.+.|..
T Consensus 808 DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 808 DALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCH
Confidence 88888764 6777778888899999999999999999999999999999999999999953
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.5e-17 Score=140.39 Aligned_cols=417 Identities=12% Similarity=0.093 Sum_probs=296.5
Q ss_pred CCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhc--CCChHH---------------------
Q 010031 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL--HKSIDY--------------------- 81 (520)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~--------------------- 81 (520)
|....+.+.++.++ ++|.+.++.-+++.|.+.|++.+..+-..|+..-+- ..++--
T Consensus 113 ~~~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK 191 (625)
T KOG4422|consen 113 PLQVETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWK 191 (625)
T ss_pred chhhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccc
Confidence 34556777777765 467888999999999999988888777766655321 111111
Q ss_pred ---HHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHh
Q 010031 82 ---ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158 (520)
Q Consensus 82 ---A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 158 (520)
.-+++-+..+.+..++.++|.++++-...+.|.++|++......+.+..+||.+|.+-.-.. ..+++.+|.+.
T Consensus 192 ~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisq 267 (625)
T KOG4422|consen 192 SGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQ 267 (625)
T ss_pred cccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHh
Confidence 11233444456778999999999999999999999999998888899999999998654332 27899999999
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHH----HHHhccCCCCCCCCCchhHHHHHHHHHhcCChhH-HHHHHhhCCC------
Q 010031 159 GVEYDAFVRVHLADMYVQLGKTRGA----FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK-AVELFGMMPK------ 227 (520)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~------ 227 (520)
.+.||..|+|+++++..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++..
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 9999999999999999999988764 5678899999999999999999999999887754 4444443332
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-----------cccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010031 228 ------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG-----------VVSWTAMINGFSQNGEAEKALAMFFQMLDA 290 (520)
Q Consensus 228 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 290 (520)
.|...|...+..|.+..+.+-|.++-.-+...+ ..-|..+....|+....+.-...|+.|.-.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 244566777788888888888888766554322 123566777888888999999999999988
Q ss_pred CCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh---HHHH
Q 010031 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL---TWTA 367 (520)
Q Consensus 291 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ 367 (520)
-.-|+..+...++++..-.+.++-.-+++..+...|..........+...+++..- .|+.. -+..
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~ 495 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------------HPLTPEREQLQV 495 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHH
Confidence 88899999999999999999999999999999988765444444444433333220 12111 1222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHH---HHHHHHh
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT---VVVNLLS 444 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~ 444 (520)
...-|+. .-.+.....-.+|.+. .......+..+-.+.+.|..++|.+++..+.++..--|-....+ .+++.-.
T Consensus 496 ~~ak~aa-d~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~ 572 (625)
T KOG4422|consen 496 AFAKCAA-DIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK 572 (625)
T ss_pred HHHHHHH-HHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH
Confidence 2222211 1112222333455553 33444566666667888999999998888854333333333344 5566666
Q ss_pred ccCChHHHHHHHhhCCC
Q 010031 445 RVGQVDKALNFINKMPE 461 (520)
Q Consensus 445 ~~g~~~~A~~~~~~~~~ 461 (520)
+......|+.+++-+..
T Consensus 573 ~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 573 VSNSPSQAIEVLQLASA 589 (625)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 77888888888887753
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-16 Score=154.86 Aligned_cols=417 Identities=10% Similarity=-0.035 Sum_probs=272.7
Q ss_pred HHhcCCChHHHHHHhcccCCCCcc---hHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccH-HHH--HHHHhccCCh
Q 010031 72 SASLHKSIDYALSIFDHFTPKNLH---IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY-PFV--SKSVASLSLL 145 (520)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~l--l~~~~~~~~~ 145 (520)
...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++... |+...+ ..+ ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCCH
Confidence 356778888888887776542221 122667777777888888888777762 433322 222 3456666788
Q ss_pred hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhC
Q 010031 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225 (520)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 225 (520)
++|.++++++.+... .++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+..++++
T Consensus 119 d~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 888888888777553 24556666677777778888888887777766 344444433333333345555577777777
Q ss_pred CC--C-CHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010031 226 PK--K-NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302 (520)
Q Consensus 226 ~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 302 (520)
.+ | +...+..+...+.+.|-...|.++..+-+ +..+-...... +.+.|.+.. ..+..++.
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p--~~f~~~~~~~l-----~~~~~a~~v----r~a~~~~~------ 258 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP--NLVSAEHYRQL-----ERDAAAEQV----RMAVLPTR------ 258 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc--cccCHHHHHHH-----HHHHHHHHH----hhcccccc------
Confidence 65 3 44556666677777777777776665533 11110000000 011111111 11111110
Q ss_pred HHHhhccCC---hHHHHHHHHHHHHc-CCCCCh-hHH----HHHHHHHHhcCCHHHHHHHHhcCCCC----ChhHHHHHH
Q 010031 303 LSACAKVGA---LEAGVRVHNYISCN-DFGLKG-AIG----TALVDMYAKCGNIEAASLVFGETKEK----DLLTWTAMI 369 (520)
Q Consensus 303 ~~~~~~~~~---~~~a~~~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~ 369 (520)
....+ .+.|..-++.+... +..|.. ..| .-.+-++...|++.++++.++.+..+ ...+-..+.
T Consensus 259 ----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 259 ----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred ----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 01112 34444555555432 111322 222 23445678889999999999999863 334667789
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcC----------CCCCh-
Q 010031 370 WGLAIHGRYEQAIQYFKKMMYSGT-----EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF----------IEPSV- 433 (520)
Q Consensus 370 ~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~~- 433 (520)
.+|...+++++|+.+|+.+..... .++......|.-++...+++++|..+++.+.+... -.|+.
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 999999999999999999977431 22333457888999999999999999999985221 01222
Q ss_pred --hHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhh
Q 010031 434 --KHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFM 509 (520)
Q Consensus 434 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 509 (520)
..+..++..+.-.|++.+|++.++++.. +-|...+..+...+...|.+.+|++.++.+..++|++..+....+..+
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 2345567888999999999999999865 567889999999999999999999999999999999999999999999
Q ss_pred hhccCCC
Q 010031 510 QQKGDGR 516 (520)
Q Consensus 510 ~~~g~~~ 516 (520)
...|+.+
T Consensus 495 l~l~e~~ 501 (822)
T PRK14574 495 MALQEWH 501 (822)
T ss_pred HhhhhHH
Confidence 9887643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-16 Score=137.31 Aligned_cols=447 Identities=12% Similarity=0.056 Sum_probs=308.3
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHhcccCC----CCcc-hHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHH-
Q 010031 62 SSRITTQLISSASLHKSIDYALSIFDHFTP----KNLH-IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV- 135 (520)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l- 135 (520)
+..++..|...|.......+|+..++-+.+ ||.- .--.+...+.+..++.+|+++|+.....-...+..+-..+
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 445555666677777888889888887665 3322 1122345677888999999999887763222222333333
Q ss_pred ---HHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCch--------hHHH
Q 010031 136 ---SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL--------LWNV 204 (520)
Q Consensus 136 ---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--------~~~~ 204 (520)
--.+.+.|.++.|...|+...+.. |+..+-..|+-++..-|+-++..+.|.+|......||.. .-..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 335678999999999999998854 787776667777888899999999999887643222221 1122
Q ss_pred HHHHHHh---------cC--ChhHHHHHHhhCC----CCCHHH---H------------------HHHHHHHHhcCCHHH
Q 010031 205 LINGCSK---------IG--YLRKAVELFGMMP----KKNVAS---W------------------VSLIDGFMRKGDLKK 248 (520)
Q Consensus 205 l~~~~~~---------~g--~~~~a~~~~~~~~----~~~~~~---~------------------~~l~~~~~~~~~~~~ 248 (520)
|+.-..+ .+ +.++++-.--++. .|+-.. | ..-...+.+.|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 2222222 11 2222222222222 232210 0 111234688899999
Q ss_pred HHHHHhcCCCCCcccHHH------HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHH
Q 010031 249 AGELFEQMPEKGVVSWTA------MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322 (520)
Q Consensus 249 a~~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 322 (520)
|.++++-+.+.|..+-.+ .+..+....++..|.++-+..+... +-+......-.......|++++|...|++.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 999998888776443222 1222222345777777766665432 333333333333345679999999999999
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 010031 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399 (520)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 399 (520)
+..+-......|+ +.-.+...|+.++|++.|-++.. .+......+...|....+..+|++++-+.... ++.|+..
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 8665444444444 33457788999999999876554 67778888889999999999999999887763 3445668
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHH-HHH
Q 010031 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCA-CRT 477 (520)
Q Consensus 400 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~-~~~ 477 (520)
...|...|-+.|+-..|.+.+-.--+ -++.+..+...|..-|....-+++|+..|++..- .|+..-|..++.. +++
T Consensus 595 lskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 89999999999999999988766542 2567788888899999999999999999998543 7999999998876 567
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCC
Q 010031 478 HKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 478 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 515 (520)
.|++.+|..+|+......|++..++..|.++.-..|-.
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99999999999999999999999999998887666643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-14 Score=137.02 Aligned_cols=501 Identities=13% Similarity=0.076 Sum_probs=257.6
Q ss_pred cchhhhhhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHh
Q 010031 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 86 (520)
|++++|..++....+.. |.+...+.++..++...|+.+.+...+-.+.-. .+-|...|..+.....+.|+++.|.-+|
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 55555555555555444 445555666666666666666655444333222 2334455555555555666666666666
Q ss_pred cccCCCCcchHH---HHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHH----HHHHHhccCChhhHHHHHHHHHHhC
Q 010031 87 DHFTPKNLHIFN---VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF----VSKSVASLSLLSLGRGLHCLIVKSG 159 (520)
Q Consensus 87 ~~~~~~~~~~~~---~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~ 159 (520)
.+..+.++.-|. --...|-+.|+...|.+.|.++.+...+.|..-+.. +++.+...++-+.|.+.++.....+
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 555432222222 223445555666666666666655332112122222 2333444444455555555555421
Q ss_pred -CCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCC---------------------------CCCCchhHHHHHHHHHh
Q 010031 160 -VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN---------------------------KSESVLLWNVLINGCSK 211 (520)
Q Consensus 160 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~ 211 (520)
-..+...++.++..+.+...++.+......+..+. +.++.... -++-++..
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~ 389 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVH 389 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhc
Confidence 12234455556666666666666555544433310 11111110 11111111
Q ss_pred cCChhHHHHHHhhCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC----CcccHHHHHHHHHhCCChhHHH
Q 010031 212 IGYLRKAVELFGMMPK------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK----GVVSWTAMINGFSQNGEAEKAL 281 (520)
Q Consensus 212 ~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~ 281 (520)
....+....+..-..+ .+...|.-+..+|...|++.+|+.+|..+... +...|-.+..+|...|.+++|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 1111111111111111 22334556666677777777777777766543 2446666777777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHH--------cCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010031 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC--------NDFGLKGAIGTALVDMYAKCGNIEAASLV 353 (520)
Q Consensus 282 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 353 (520)
+.|+..+... +-+...-..+-..+.+.|+.++|.+.+..+.. .+..|.........+.+.+.|+.++=..+
T Consensus 470 e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 470 EFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 7777766642 22333444455556667777777776666431 12223333333334444444544432111
Q ss_pred HhcCC----------------------------------------C--------------C-----------Ch----hH
Q 010031 354 FGETK----------------------------------------E--------------K-----------DL----LT 364 (520)
Q Consensus 354 ~~~~~----------------------------------------~--------------~-----------~~----~~ 364 (520)
...|. . + .. ..
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 10000 0 0 00 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh---hHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGT--EPDG---TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV---KHH 436 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~ 436 (520)
+.-++.++++.+++++|+.+...+..... .++. ..-...+.++...+++..|...++.|...++...++ ..|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34566777888888888888887766422 1111 122334556677888888888888887654443332 344
Q ss_pred HHHHHHHhccCChHHHHHHHhh-CCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 437 TVVVNLLSRVGQVDKALNFINK-MPETPDFVIWGALF--CACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
+.......+.|+-.-=.+++.. +..+|+......++ .-....+.+.-|++.+-+++..+|++|-.-..+|..+..
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 5444555555544333444443 23233332222222 235678899999999999999999999888877776653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.2e-14 Score=125.10 Aligned_cols=434 Identities=11% Similarity=0.061 Sum_probs=325.6
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 010031 63 SRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139 (520)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 139 (520)
...+-....--..++++..|.++|++... .+...|-..+..-.++.....|..++++....=...|..-|. -+..-
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymE 151 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYME 151 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHH
Confidence 33343444444457788899999998764 677788888888899999999999999988732222333332 33334
Q ss_pred hccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHH
Q 010031 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219 (520)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 219 (520)
-..|++..|.++|+...+ ..|+...|++.|+.-.+-..++.|..++++..-. .|++.+|.-....-.+.|....|.
T Consensus 152 E~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 567999999999999988 6799999999999999999999999999998765 699999999999999999999999
Q ss_pred HHHhhCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCC----CC-cccHHHHHHHHHhCCChhHHHHH-----
Q 010031 220 ELFGMMPK------KNVASWVSLIDGFMRKGDLKKAGELFEQMPE----KG-VVSWTAMINGFSQNGEAEKALAM----- 283 (520)
Q Consensus 220 ~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~l~~~~~~~~~~~~a~~~----- 283 (520)
.+|+...+ .+...+.+....-.++..++.|.-+|+-..+ .. ...|..+...--+-|+.....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 99988876 2334566666666778888899888875543 21 23455555544555665444332
Q ss_pred ---HHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCCh-h-HHHHHH--------HHHHhcCCHHHH
Q 010031 284 ---FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-A-IGTALV--------DMYAKCGNIEAA 350 (520)
Q Consensus 284 ---~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~l~--------~~~~~~~~~~~a 350 (520)
|+.++..+ +-|-.++--.+..-...|+.+...++|+.+... ++|-. . .|...| -.-....+.+.+
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44555543 567778888888888889999999999999854 33422 1 122111 112356889999
Q ss_pred HHHHhcCCC--C-Chh----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHc
Q 010031 351 SLVFGETKE--K-DLL----TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423 (520)
Q Consensus 351 ~~~~~~~~~--~-~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 423 (520)
.++++...+ | ... .|.....-..++.+...|.+++...+. .-|...+|...|..-.+.++++.+..++++.
T Consensus 386 r~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 386 RQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999987765 3 223 344455556678999999999998875 6899999999999999999999999999999
Q ss_pred HhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q 010031 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDF----VIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 499 (520)
.+ .+ |.+..+|......-...|+.+.|..+|+-+...|.. ..|.+.+.--...|.+++|..+|+++++..+..+
T Consensus 464 le-~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 464 LE-FS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred Hh-cC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 84 42 445678888888888999999999999998876543 3566666666789999999999999999988766
Q ss_pred chhHHHHhh
Q 010031 500 QAMSYCQTF 508 (520)
Q Consensus 500 ~~~~~l~~~ 508 (520)
+|...+.+
T Consensus 542 -vWisFA~f 549 (677)
T KOG1915|consen 542 -VWISFAKF 549 (677)
T ss_pred -HHHhHHHH
Confidence 55444443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-13 Score=123.10 Aligned_cols=465 Identities=11% Similarity=0.085 Sum_probs=372.0
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC--------CCcchHHHHHH
Q 010031 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP--------KNLHIFNVLIR 102 (520)
Q Consensus 31 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~li~ 102 (520)
..-+.-+|++...++.|..+++...+. ++.+..++.+....--.+|+++...+++++-.. -+...|-.=..
T Consensus 409 s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe 487 (913)
T KOG0495|consen 409 SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE 487 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence 345666777778889999999988665 566778887777666788999998888875421 34556777777
Q ss_pred HHHhCCChhHHHHHHHHhhhCCCCCC--cccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 010031 103 GLAENSHFQSCISHFVFMLRLSVRPN--RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180 (520)
Q Consensus 103 ~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 180 (520)
.|-..|..-.+..+......-|+.-. ..||..-...|.+.+.++-++.+|...++- ++-+...|...+.+--..|..
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTR 566 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcH
Confidence 88888888888888888887776432 348888889999999999999999999884 334677888888888888999
Q ss_pred hHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010031 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMP 257 (520)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (520)
+.-..+|++.... ++.....|......+-..|++..|..++.+.-+ .+...|.+-+........++.|..+|.+..
T Consensus 567 Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 567 ESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 9999999998877 355666777777778889999999999998876 456789999999999999999999999887
Q ss_pred CC--CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHH
Q 010031 258 EK--GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335 (520)
Q Consensus 258 ~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (520)
.. ....|.--+...--.++.++|.+++++.++. ++--...|..+.+.+-+.++++.|...|..-.+. ++..+..|-
T Consensus 646 ~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWl 723 (913)
T KOG0495|consen 646 SISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWL 723 (913)
T ss_pred ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHH
Confidence 54 3567777777777788999999999998886 3334556777778888999999999888765533 456778888
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc
Q 010031 336 ALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412 (520)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 412 (520)
.|...-.+.|.+-.|+.+++...- | |...|...|+.-.+.|+.+.|..+..+..+. ++-+...|.--|...-+.++
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCccc
Confidence 899999999999999999997664 3 6679999999999999999999999888875 33344577777777767666
Q ss_pred HHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010031 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQS 490 (520)
Q Consensus 413 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (520)
-......+++. .-|+++...+...+....++++|.+.|.+... .|| -.+|.-+..-+.++|.-+.-.+++.+
T Consensus 803 kTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 803 KTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred chHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 55555444433 56777788888999999999999999999765 444 57899999999999999999999999
Q ss_pred HhcCCCCCcchhHHHHh
Q 010031 491 SCSLNLSIPQAMSYCQT 507 (520)
Q Consensus 491 ~~~~~p~~~~~~~~l~~ 507 (520)
...-.|.....|.....
T Consensus 877 c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 877 CETAEPTHGELWQAVSK 893 (913)
T ss_pred HhccCCCCCcHHHHHhh
Confidence 99999999888866543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-13 Score=127.83 Aligned_cols=470 Identities=13% Similarity=0.033 Sum_probs=323.0
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhc---ccCCCCcchHHHHHHHHHhCC
Q 010031 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD---HFTPKNLHIFNVLIRGLAENS 108 (520)
Q Consensus 32 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~~~~~~~li~~~~~~~ 108 (520)
...+..+-..|+.+.|.+++.++++.. +.....|.+|..+|-..|+.++++..+- .+.+.|...|..+.....+.|
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 345566677799999999999999997 4567889999999999999999987764 344567788999999899999
Q ss_pred ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHH----HHHHHHHhcCChhHHH
Q 010031 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV----HLADMYVQLGKTRGAF 184 (520)
Q Consensus 109 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~ 184 (520)
++++|.-+|.+..+... ++...+---...|-+.|+...|...|.++.....+.|..-.. ..++.+...++-+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999998542 333333334567788999999999999999876533433333 3455677778889999
Q ss_pred HHhccCCCC-CCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC----CCHH----------------------HHH---
Q 010031 185 KVFDETPEK-NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVA----------------------SWV--- 234 (520)
Q Consensus 185 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~----------------------~~~--- 234 (520)
+.++..... +-..+...++.++..+.+...++.|......... +|.. +|.
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 988876652 2245677888999999999999998887755543 1111 111
Q ss_pred -HHHHHHHhcCCHHHHHHHHhcCCCC------CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 010031 235 -SLIDGFMRKGDLKKAGELFEQMPEK------GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307 (520)
Q Consensus 235 -~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 307 (520)
-+.-++.+.+..+....+...+.+. ++..|.-+..+|...|++.+|+.+|..+...-..-+...|..+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 1222333333333333333333322 245688899999999999999999999998755556778999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh------------hHHHHHHHHHHHc
Q 010031 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL------------LTWTAMIWGLAIH 375 (520)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~l~~~~~~~ 375 (520)
..|..+.|.+.|+.++... +.+...-..|...+.+.|+.++|.+++..+..||. .........+...
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998765 34556667788899999999999999999877652 1222334456677
Q ss_pred CCHHHHHHHHHHHHHCC-----C-----------------CCCHHHHHHHHHHHHccCcHHHHHHHHHHc-----HhhcC
Q 010031 376 GRYEQAIQYFKKMMYSG-----T-----------------EPDGTVFLAILTACWYSGQVKLALNFFDSM-----RFDYF 428 (520)
Q Consensus 376 ~~~~~a~~~~~~~~~~~-----~-----------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~ 428 (520)
|+.++=+.+...|+..+ + .-........+.+-.+.++......-...- ....+
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 77776555544443311 1 111122223333333333322222211111 11122
Q ss_pred CCCCh--hHHHHHHHHHhccCChHHHHHHHhhCCC-----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcC----
Q 010031 429 IEPSV--KHHTVVVNLLSRVGQVDKALNFINKMPE-----TPDF---VIWGALFCACRTHKDTKIAKIALQSSCSL---- 494 (520)
Q Consensus 429 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 494 (520)
+..+. ..+..++..+.+.|++++|..++..+.. .++. ..-...+.+....+++..|...++.++..
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~ 699 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY 699 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence 22222 3456778889999999999999988765 1222 12334455677899999999999999876
Q ss_pred -CCCCcchhHH
Q 010031 495 -NLSIPQAMSY 504 (520)
Q Consensus 495 -~p~~~~~~~~ 504 (520)
+|..+..|+.
T Consensus 700 ~~~~q~~l~n~ 710 (895)
T KOG2076|consen 700 LDVYQLNLWNL 710 (895)
T ss_pred hhhHHHHHHHH
Confidence 6666666663
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=144.63 Aligned_cols=246 Identities=17% Similarity=0.139 Sum_probs=107.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 010031 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS-ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345 (520)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 345 (520)
+...+.+.|++++|++++++......+|+...|.. +...+...++++.|...++++...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 45667788888888888866544432344444443 444555678888888888888766533 55666667766 6788
Q ss_pred CHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 010031 346 NIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKLALNFFDS 422 (520)
Q Consensus 346 ~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 422 (520)
++++|.+++....+ ++...+..++..+...++++++..+++.+.... ..++...|..+...+.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888876644 455667778888888899999999998877532 234556777888888899999999999999
Q ss_pred cHhhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q 010031 423 MRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 423 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 499 (520)
..+. .| +......++..+...|+.+++.++++.... +.|+..|..+..++...|+.++|...++++++.+|+||
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 8853 45 466788889999999999987777776543 34566788888889999999999999999999999999
Q ss_pred chhHHHHhhhhhccCCCc
Q 010031 500 QAMSYCQTFMQQKGDGRT 517 (520)
Q Consensus 500 ~~~~~l~~~~~~~g~~~~ 517 (520)
..+..++.++.+.|+.+.
T Consensus 249 ~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDE 266 (280)
T ss_dssp HHHHHHHHHHT-------
T ss_pred cccccccccccccccccc
Confidence 999999999999998764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-13 Score=118.41 Aligned_cols=445 Identities=11% Similarity=0.073 Sum_probs=328.7
Q ss_pred ccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC--CCc-chHHHHHHHHHhCCChhHHHHHH
Q 010031 41 SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP--KNL-HIFNVLIRGLAENSHFQSCISHF 117 (520)
Q Consensus 41 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~ 117 (520)
.++...|+.+|+..+.-. ..+...+-..+.+-.+...+..|..++++... |.+ ..|...+..--..|+...|.++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 346778889999888765 55778888888888999999999999998654 322 45666666666789999999999
Q ss_pred HHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCC-CC-
Q 010031 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK-NK- 195 (520)
Q Consensus 118 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~- 195 (520)
++-.. ..|+...|.+.|+.-.+.+.++.|..+++..+- +.|++..|.-....--+.|+...|..+|+...+. |-
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 99877 679999999999999999999999999999887 4599999999999999999999999999876653 10
Q ss_pred CCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--C---CHHHHHHHHHHHHhcCCHHHHHHH--------HhcCCCCC--
Q 010031 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPK--K---NVASWVSLIDGFMRKGDLKKAGEL--------FEQMPEKG-- 260 (520)
Q Consensus 196 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~-- 260 (520)
..+...+.+....-.++..++.|..+|.-... | ....|..+...--+-|+.....+. ++.+...+
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 11223344444444567778888888876665 3 234566666555556665444433 22333333
Q ss_pred -cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHh---hccCChHHHHHHHHHHHHcCCCC
Q 010031 261 -VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND-------FTVVSALSAC---AKVGALEAGVRVHNYISCNDFGL 329 (520)
Q Consensus 261 -~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~ 329 (520)
-.+|--.++.--..|+.+...++|++.+.. ++|-. ..|.-+=-++ ....+++.+.++++..++. ++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 346667777778889999999999999875 45532 1122121122 3567899999999998873 445
Q ss_pred ChhHHHHHH----HHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 010031 330 KGAIGTALV----DMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLA 402 (520)
Q Consensus 330 ~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ 402 (520)
...+|..+- ....++.++..|.+++..... |...+|...|..-.+.++++.+..+|++.++- .| |..+|..
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~k 476 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSK 476 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHH
Confidence 555665443 334578899999999987765 77778888888888999999999999999994 55 4558888
Q ss_pred HHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHH-----
Q 010031 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACR----- 476 (520)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~----- 476 (520)
....-...|+.+.|..+|.-+.....+......|-..|..-...|.++.|..+++++.. .+...+|.++..--.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~ 556 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEG 556 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccccc
Confidence 88888889999999999999885333333344566667766789999999999999876 455667777664322
Q ss_pred HcC-----------CHHHHHHHHHHHhcC
Q 010031 477 THK-----------DTKIAKIALQSSCSL 494 (520)
Q Consensus 477 ~~g-----------~~~~A~~~~~~~~~~ 494 (520)
..| +...|..+|+++...
T Consensus 557 ~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 557 QEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred ccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 344 667899999998753
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-13 Score=126.38 Aligned_cols=220 Identities=13% Similarity=0.006 Sum_probs=153.4
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChh-------HHHHHHHHH
Q 010031 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA-------IGTALVDMY 341 (520)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~ 341 (520)
..+...|++++|...++++.+.. +-++.....+...|.+.|+++.+..++..+.+.+..++.. .+..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555543 2234444555555555555555555555555544322111 222223333
Q ss_pred HhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 010031 342 AKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 418 (520)
....+.+...++++.+.+ .++.....+...+...|+.++|..++++..+. .|+.... ++.+....++.+++.+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence 344456666777777655 46778888999999999999999999999883 5555322 2334446699999999
Q ss_pred HHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 010031 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495 (520)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 495 (520)
..+...+.+ +-|+..+..+...+.+.|++++|.+.|++... .|+...+..+..++.+.|+.++|.+++++.+.+.
T Consensus 316 ~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 316 VLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999988643 45566788999999999999999999999776 6999999999999999999999999999998764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-12 Score=114.20 Aligned_cols=429 Identities=11% Similarity=0.102 Sum_probs=263.7
Q ss_pred cchhhhhhcccccccCCCCCCCCCHHHHHHHHHhccC--chHH-HHHHHH-------------------HHHhCCCCChH
Q 010031 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNS--TKQL-RQIHAQ-------------------IILHNLFASSR 64 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~a-~~~~~~-------------------~~~~~~~~~~~ 64 (520)
+.+.++--++..|.+.+.+-+......+.++..-.+. +.-+ .+.|-. +...-.+-+..
T Consensus 129 ~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~e 208 (625)
T KOG4422|consen 129 REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDE 208 (625)
T ss_pred cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCch
Confidence 4566777778888888877666555555555443331 1111 111111 12222345678
Q ss_pred HHHHHHHHHhcCCChHHHHHHhcccCC----CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHh
Q 010031 65 ITTQLISSASLHKSIDYALSIFDHFTP----KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140 (520)
Q Consensus 65 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 140 (520)
++..+|..+|+--..+.|.+++++... -+..+||.+|.+-. +....+++.+|....++||..|+|.++.+.+
T Consensus 209 t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~a 284 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLSCAA 284 (625)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHHHHH
Confidence 899999999999999999999998764 35567888887543 3333789999999999999999999999999
Q ss_pred ccCChhh----HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhH-HHH----HhccCCCCCCCC----CchhHHHHHH
Q 010031 141 SLSLLSL----GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG-AFK----VFDETPEKNKSE----SVLLWNVLIN 207 (520)
Q Consensus 141 ~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~----~~~~~~~~~~~~----~~~~~~~l~~ 207 (520)
+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +.. +.+.+..+.++| +...|..-+.
T Consensus 285 kfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~ 364 (625)
T KOG4422|consen 285 KFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMS 364 (625)
T ss_pred HhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHH
Confidence 9998765 46778889999999999999999999999888754 333 334444333333 4455667788
Q ss_pred HHHhcCChhHHHHHHhhCCC--------CC---HHHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCcccHHHHHHHHH
Q 010031 208 GCSKIGYLRKAVELFGMMPK--------KN---VASWVSLIDGFMRKGDLKKAGELFEQMPE----KGVVSWTAMINGFS 272 (520)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~ 272 (520)
.|....+.+.|.++..-+.. |+ ..-|..+....|.....+.-..+|+.|.. +...+...++++.-
T Consensus 365 Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~ 444 (625)
T KOG4422|consen 365 ICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALD 444 (625)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHh
Confidence 88888898888877665543 22 23466777888888999999999999875 34566777888888
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-CCHHHH-
Q 010031 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC-GNIEAA- 350 (520)
Q Consensus 273 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a- 350 (520)
..|+++-.-+++..++..|-.-+...-. +++..+......|+...-.-+-....++ -++.++
T Consensus 445 v~~~~e~ipRiw~D~~~~ght~r~~l~e----------------eil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 445 VANRLEVIPRIWKDSKEYGHTFRSDLRE----------------EILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred hcCcchhHHHHHHHHHHhhhhhhHHHHH----------------HHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888876332222222 2222222222222212111111111100 001111
Q ss_pred HHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 351 SLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT----EPDGTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 351 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
...-.++.+ -.....+..+-.+.+.|..++|.+++..+.+.+- .|......-++....+.++...|...++-|.
T Consensus 509 e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 509 ESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 111111111 1233444445555666777777777766644331 2222333455555566667777777777765
Q ss_pred hhcCCCCChhHHHHHHHHHhccCChHHHHHHH
Q 010031 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456 (520)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (520)
. ++.+.-...-+.++..+.-+..-.+|+.-+
T Consensus 589 ~-~n~~~~E~La~RI~e~f~iNqeq~~~ls~l 619 (625)
T KOG4422|consen 589 A-FNLPICEGLAQRIMEDFAINQEQKEALSNL 619 (625)
T ss_pred H-cCchhhhHHHHHHHHhcCcCHHHHHHHhhh
Confidence 3 333222223444555544444444444433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-13 Score=120.00 Aligned_cols=84 Identities=15% Similarity=0.097 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCC-cccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCC-hhHHHHHHHHH
Q 010031 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPN-RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD-AFVRVHLADMY 174 (520)
Q Consensus 97 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 174 (520)
+-....-|.++|.+++|++.|.+.++ ..|| +.-|.....+|...|+|+++.+--...++.+ |+ ...+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 33444567788888999999988887 5577 6667777777788888888887777776633 44 33555566677
Q ss_pred HhcCChhHHH
Q 010031 175 VQLGKTRGAF 184 (520)
Q Consensus 175 ~~~g~~~~a~ 184 (520)
-..|++++|+
T Consensus 194 E~lg~~~eal 203 (606)
T KOG0547|consen 194 EQLGKFDEAL 203 (606)
T ss_pred HhhccHHHHH
Confidence 7777777764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.6e-13 Score=116.86 Aligned_cols=432 Identities=13% Similarity=0.085 Sum_probs=229.6
Q ss_pred hhhhhcccccccCCCCCCCCCH-HHHHHHHHhccCchHHHHHHHHHHHhCCCCC----hHHHHHHHHHHhcCCChHHHHH
Q 010031 10 TTAIAPTTNIKSSHKPSNNITE-THIISLIHSSNSTKQLRQIHAQIILHNLFAS----SRITTQLISSASLHKSIDYALS 84 (520)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~ 84 (520)
.+|+.-++-+.+....|+.... ..+..+.-+...+..|.++++..+..-+..+ ..+.+.+--.+.+.|.+++|+.
T Consensus 218 ~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dain 297 (840)
T KOG2003|consen 218 AEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAIN 297 (840)
T ss_pred HHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHh
Confidence 3455555555555444443322 2334444444566777777776665522222 2333334444667788888888
Q ss_pred HhcccCC--CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCccc--------HHHHHHHHhc---------cC--
Q 010031 85 IFDHFTP--KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT--------YPFVSKSVAS---------LS-- 143 (520)
Q Consensus 85 ~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~--------~~~ll~~~~~---------~~-- 143 (520)
.|+...+ ||..+--.|+-++..-|+.++..+.|.+|..--..||..- -..|+.-..+ .+
T Consensus 298 sfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka 377 (840)
T KOG2003|consen 298 SFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKA 377 (840)
T ss_pred hHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhh
Confidence 7776543 5544333333344456677777777777765322222221 1112211111 11
Q ss_pred ChhhHHHHHHHHHHhCCCCChh-------------HHH--------HHHHHHHhcCChhHHHHHhccCCCCCCCCCchhH
Q 010031 144 LLSLGRGLHCLIVKSGVEYDAF-------------VRV--------HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202 (520)
Q Consensus 144 ~~~~a~~~~~~~~~~~~~~~~~-------------~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 202 (520)
+.+.+...-.+++.--+.|+-. .+. .-..-+.+.|+++.|++++.-..+.+-+.-...-
T Consensus 378 ~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa 457 (840)
T KOG2003|consen 378 DAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAA 457 (840)
T ss_pred hHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHh
Confidence 1111111111111111112110 000 0122355666777766666655544322222222
Q ss_pred HHHHHHHHh--cCChhHHHHHHhhCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccc---HHHHHHHHHhC
Q 010031 203 NVLINGCSK--IGYLRKAVELFGMMPKKNV---ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS---WTAMINGFSQN 274 (520)
Q Consensus 203 ~~l~~~~~~--~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~ 274 (520)
+.|...+.- -.++..|..+-+.....|. .....-.+.....|+++.|.+.|++....|... ...+.-.+-..
T Consensus 458 ~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~ 537 (840)
T KOG2003|consen 458 NNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEAL 537 (840)
T ss_pred hhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHh
Confidence 222222222 2245555555554443221 112222223344577777777777777666432 22233345667
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 010031 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354 (520)
Q Consensus 275 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 354 (520)
|+.++|++.|-++..- +..+...+..+...|....+..+|++++.+... -++.|+.+...|.+.|-+.|+-..|.+..
T Consensus 538 ~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ 615 (840)
T KOG2003|consen 538 GNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCH 615 (840)
T ss_pred cCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhh
Confidence 7777777777665442 233455566666677777777777777766553 24566777777777777777777776665
Q ss_pred hcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCcHHHHHHHHHHcHhhcCCC
Q 010031 355 GETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW-YSGQVKLALNFFDSMRFDYFIE 430 (520)
Q Consensus 355 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~ 430 (520)
-+--+ -|+.+..-|...|....-+++++.+|++..- +.|+..-|..++..|. +.|++.+|.++++...++ ++
T Consensus 616 ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fp 691 (840)
T KOG2003|consen 616 YDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FP 691 (840)
T ss_pred hhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--Cc
Confidence 44333 3666666677777777777777777777655 6777777777666543 577777777777777543 46
Q ss_pred CChhHHHHHHHHHhccC
Q 010031 431 PSVKHHTVVVNLLSRVG 447 (520)
Q Consensus 431 ~~~~~~~~l~~~~~~~g 447 (520)
.+.....-|++.+...|
T Consensus 692 edldclkflvri~~dlg 708 (840)
T KOG2003|consen 692 EDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cchHHHHHHHHHhcccc
Confidence 66666666766666555
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-12 Score=124.48 Aligned_cols=223 Identities=12% Similarity=-0.006 Sum_probs=144.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHH-------HHHHH
Q 010031 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT-------ALVDM 340 (520)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~ 340 (520)
...+...|+++.|...++.+.+.. +-++.....+...+...|+++.+.+.+..+.+.+..+...... .++..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555543 2233444555555555555555555555555554322221111 11111
Q ss_pred HHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHHHccCcHH
Q 010031 341 YAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV--F-LAILTACWYSGQVK 414 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~-~~l~~~~~~~g~~~ 414 (520)
-......+...+.++...+ .+...+..++..+...|+.++|.+++++..+. .||... + ..........++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChH
Confidence 1122234455555655554 37778888899999999999999999999984 455542 1 11222234467888
Q ss_pred HHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhh--CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010031 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK--MPE-TPDFVIWGALFCACRTHKDTKIAKIALQSS 491 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 491 (520)
.+.+.+++..+..+-.|+.....++.+.+.+.|++++|.+.|++ ... .|++..+..+...+.+.|+.++|.+++++.
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988876432222225677899999999999999999994 433 799988889999999999999999999998
Q ss_pred hc
Q 010031 492 CS 493 (520)
Q Consensus 492 ~~ 493 (520)
+.
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 75
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=136.97 Aligned_cols=250 Identities=14% Similarity=0.144 Sum_probs=105.0
Q ss_pred HHHHHhcCCHHHHHHHHhcC-CC----CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC
Q 010031 237 IDGFMRKGDLKKAGELFEQM-PE----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311 (520)
Q Consensus 237 ~~~~~~~~~~~~a~~~~~~~-~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 311 (520)
...+.+.|++++|.+++++. .. .+...|..+.......++++.|.+.++++...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44455556666666666322 11 12344555555566666777777777777665422 34445555554 56677
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHHcCCHHHHHHHHH
Q 010031 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDLLTWTAMIWGLAIHGRYEQAIQYFK 386 (520)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~ 386 (520)
+++|..++....+.. +++..+..++..+...++++++.++++.+.. ++...|..+...+.+.|+.++|+..++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777766554432 4455566667777777777777777766432 466678888888999999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CC
Q 010031 387 KMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TP 463 (520)
Q Consensus 387 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 463 (520)
+..+ ..|+ ......++..+...|+.+++.++++...+.. +.++..+..+..+|...|+.++|...+++... +.
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 9998 5776 5578889999999999999999998887543 56667788999999999999999999999765 34
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 464 DFVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 464 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
|+.....+..++...|+.++|..+.+++++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp -HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 6778888889999999999999999988753
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.6e-12 Score=114.54 Aligned_cols=459 Identities=10% Similarity=0.023 Sum_probs=299.5
Q ss_pred cCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcc--cCCCCcchHHHHHHHHHhCCChhHHHHHHH-
Q 010031 42 NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH--FTPKNLHIFNVLIRGLAENSHFQSCISHFV- 118 (520)
Q Consensus 42 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~- 118 (520)
.+...|..+-+++...+..|+.. --+..++.-.|.++.|..+... +.+.+..+.......+.+..++++|+.++.
T Consensus 30 ~~y~~a~f~adkV~~l~~dp~d~--~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~ 107 (611)
T KOG1173|consen 30 HRYKTALFWADKVAGLTNDPADI--YWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGR 107 (611)
T ss_pred HhhhHHHHHHHHHHhccCChHHH--HHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35555666666665555444433 3466777777888888777653 445788888888888999999999999887
Q ss_pred ---HhhhC---------CCCCCccc----HHHHHH-------HHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010031 119 ---FMLRL---------SVRPNRLT----YPFVSK-------SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175 (520)
Q Consensus 119 ---~m~~~---------~~~p~~~~----~~~ll~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (520)
.+... -+.+|..- -+.-.+ .+....+.++|...+.+... .|+..+..+...-.
T Consensus 108 ~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~lvs 183 (611)
T KOG1173|consen 108 GHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL----ADAKCFEAFEKLVS 183 (611)
T ss_pred cchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHHHH
Confidence 22110 01111111 111111 23334456666666666554 34444433322111
Q ss_pred hc-CChhHHHHHhccCCCC-CCCCCchhHHHHHHHH-HhcCChhHHHHHH--hhCC--CCCHHHHHHHHHHHHhcCCHHH
Q 010031 176 QL-GKTRGAFKVFDETPEK-NKSESVLLWNVLINGC-SKIGYLRKAVELF--GMMP--KKNVASWVSLIDGFMRKGDLKK 248 (520)
Q Consensus 176 ~~-g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~--~~~~--~~~~~~~~~l~~~~~~~~~~~~ 248 (520)
.. =-..+-..+|+.+.-. -...+......+.... ++..+. .....- ..+. +.+........+-+...+++.+
T Consensus 184 ~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~ 262 (611)
T KOG1173|consen 184 AHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNE-ESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKE 262 (611)
T ss_pred HHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc-cccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHH
Confidence 10 0011112222221100 0011111111111111 000000 000000 0000 1345555666677788899999
Q ss_pred HHHHHhcCCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHc
Q 010031 249 AGELFEQMPEKGV---VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325 (520)
Q Consensus 249 a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (520)
..++++.+.+.|. ..+..-|.++...|+..+-..+=.++.+. .+-.+.+|..+.--|...|+..+|.++|.+....
T Consensus 263 c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l 341 (611)
T KOG1173|consen 263 CLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL 341 (611)
T ss_pred HHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 9999999887663 45667777889999988888888888876 3556788888888888889999999999998765
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHH
Q 010031 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFL 401 (520)
Q Consensus 326 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~ 401 (520)
+. .-...|-.+...|.-.|..|.|...+....+ .....+.-+.--|.+.++...|.++|.+... +.|+.. ..+
T Consensus 342 D~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~ 418 (611)
T KOG1173|consen 342 DP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLH 418 (611)
T ss_pred Cc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhh
Confidence 42 2345778888999999999999888876554 2223344455567888999999999999887 677555 666
Q ss_pred HHHHHHHccCcHHHHHHHHHHcHhhc----CCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHH
Q 010031 402 AILTACWYSGQVKLALNFFDSMRFDY----FIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCA 474 (520)
Q Consensus 402 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 474 (520)
-+.-.....+.+.+|..+|+.....- .-.+ -..+++.|..+|.+.+++++|+..+++... +.++.++.++...
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~i 498 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYI 498 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 66666667899999999999876211 0011 235688999999999999999999999665 5678899999999
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 475 CRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 475 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
|...|+++.|++.|.+++.+.|++..+-..|+.+...
T Consensus 499 y~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 499 YHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999999999999999999999998888887776654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.4e-14 Score=129.29 Aligned_cols=203 Identities=13% Similarity=0.049 Sum_probs=153.1
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh---HHHHHH
Q 010031 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL---TWTAMI 369 (520)
Q Consensus 293 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~ 369 (520)
+-.+.+|-.+..+|.-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+.....|.. .|..++
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG 496 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence 3445666666666666666666666666666543 125566666666666677777777777777765443 566677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 370 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
-.|.+.++++.|+-.|+++.+ +.|... ....+...+.+.|+.++|+++++++..-. +.|+..--..+..+...++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNPLCKYHRASILFSLGR 572 (638)
T ss_pred hheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCchhHHHHHHHHHhhcc
Confidence 889999999999999999998 677554 66677778889999999999999987421 3344444456777888999
Q ss_pred hHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 449 VDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 449 ~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
+++|+..++++++ -|+ ...+..+...|.+.|+.+.|+..|.-|+.++|.-..
T Consensus 573 ~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 573 YVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 9999999999876 354 567777888899999999999999999999997655
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-11 Score=111.04 Aligned_cols=407 Identities=13% Similarity=0.017 Sum_probs=249.2
Q ss_pred HHHHHHhcCCChHHHHHHhcccCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccC
Q 010031 68 QLISSASLHKSIDYALSIFDHFTP--KN-LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL-TYPFVSKSVASLS 143 (520)
Q Consensus 68 ~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~ 143 (520)
..-.-|-+.|++++|++.+.+..+ |+ ++.|.....+|...|+|++..+.-.+.++ +.|+-. .+..-.+++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhc
Confidence 344556788999999999998764 66 78888899999999999999988888877 556643 3444445666777
Q ss_pred ChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhcc-CCCCCCCCCchhHHHHHHHHHhcCChhHHHHHH
Q 010031 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE-TPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222 (520)
Q Consensus 144 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 222 (520)
++++|..=..-..=.+--.+..+ ..++.--.+ ..|....++ +.+.+ +|...+- ..|..|...=..+--
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~-~~~~eR~Lk----k~a~~ka~e~~k~nr-~p~lPS~-~fi~syf~sF~~~~~---- 266 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASI-EPMAERVLK----KQAMKKAKEKLKENR-PPVLPSA-TFIASYFGSFHADPK---- 266 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchh-HHHHHHHHH----HHHHHHHHHhhcccC-CCCCCcH-HHHHHHHhhcccccc----
Confidence 77776543322221111011111 111111111 112222222 22221 3322222 222222221000000
Q ss_pred hhCCCCCHHHHHHHHHH----HHhc-CCHHHHHHHHhcC-------CCCC---------cccHHHHHHHHHhCCChhHHH
Q 010031 223 GMMPKKNVASWVSLIDG----FMRK-GDLKKAGELFEQM-------PEKG---------VVSWTAMINGFSQNGEAEKAL 281 (520)
Q Consensus 223 ~~~~~~~~~~~~~l~~~----~~~~-~~~~~a~~~~~~~-------~~~~---------~~~~~~l~~~~~~~~~~~~a~ 281 (520)
..+..+.......+..+ +... ..+..|...+.+- ...+ ..+.......+.-.|+...|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 00000111111111111 1110 1222333322221 1111 112222233355678888999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-
Q 010031 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK- 360 (520)
Q Consensus 282 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 360 (520)
.-|+..+.....++. .|..+...|....+.++....|.+..+.+. .++.+|..-.+.+.-.+++++|..=|++...-
T Consensus 347 ~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 347 EDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999998886533333 277777788999999999999999988764 57778888888888889999999999988763
Q ss_pred --ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-----
Q 010031 361 --DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----- 432 (520)
Q Consensus 361 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----- 432 (520)
++..|-.+..+..+.+++++++..|++.+++ -|+ +..|+.....+...+++++|.+.|+...+ +.|+
T Consensus 425 pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~ 499 (606)
T KOG0547|consen 425 PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLII 499 (606)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hcccccccc
Confidence 4556666777777888999999999999885 444 45888889999999999999999998875 2333
Q ss_pred ----hhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 010031 433 ----VKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLN 495 (520)
Q Consensus 433 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 495 (520)
+.+.-.++..-.+ +++..|.+++++..+ .|. ...+.+|...-.+.|+.++|+++|++...+.
T Consensus 500 v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred ccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2223333333333 889999999998775 343 4478888888889999999999999987654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-12 Score=122.08 Aligned_cols=274 Identities=13% Similarity=0.100 Sum_probs=175.9
Q ss_pred CCChhHHHHHHHHhhhCCCCCCccc-HHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHH--HHHHHHHhcCChhHH
Q 010031 107 NSHFQSCISHFVFMLRLSVRPNRLT-YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV--HLADMYVQLGKTRGA 183 (520)
Q Consensus 107 ~~~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a 183 (520)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.+...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555544421 11121 222233335666666666666666553 23332222 234556666666666
Q ss_pred HHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC---CCH--------HHHHHHHHHHHhcCCHHHHHHH
Q 010031 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNV--------ASWVSLIDGFMRKGDLKKAGEL 252 (520)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~--------~~~~~l~~~~~~~~~~~~a~~~ 252 (520)
...++++.+.. |.++.....+...|.+.|++++|..++..+.+ .+. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66666666554 44555566666666666666666666666654 111 1233334434444556666677
Q ss_pred HhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCC
Q 010031 253 FEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329 (520)
Q Consensus 253 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (520)
++.+.. .++.....+...+...|+.++|.+.+++..+. +|++... ++.+....++.+.+.+..+...+.. +-
T Consensus 252 w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 776653 34567777888888889999999888888773 4555222 2334445688888888888887664 35
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
|+.....+...+.+.+++++|.+.|+...+ |+...+..+...+.+.|+.++|..+|++...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666778888889999999999999988765 7777888888999999999999999988754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-11 Score=107.38 Aligned_cols=252 Identities=14% Similarity=0.105 Sum_probs=142.4
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC------CCHHHHHHHHHHHHhc
Q 010031 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK------KNVASWVSLIDGFMRK 243 (520)
Q Consensus 170 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~ 243 (520)
+..++....+.++++.-.+.....|++.+...-+....+.....++++|+.+|+++.+ .|..+|..++-.--..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 4455666667777777777777777666666666666666677788888888887776 3555666655433322
Q ss_pred CCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 010031 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323 (520)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 323 (520)
..+.---...-.+.+--+.|...+.+-|.-.++.++|...|++.++.+ +-....++.+.+-|....+...|.+.++.++
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 222211111112222234555666666666677777777777766653 2233445555555666666666666666666
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010031 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400 (520)
Q Consensus 324 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 400 (520)
+.. +.|-..|-.|.++|.-.+.+.-|+-.|++... .|...|.+|..+|.+.++.++|++.|.+....|- .+...+
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l 469 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSAL 469 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHH
Confidence 543 23445555555555555555555555554433 2445555555555555555555555555555331 233455
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcH
Q 010031 401 LAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
..|...+-+.++..+|...|++..
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 555555555555555555555443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-13 Score=128.79 Aligned_cols=262 Identities=12% Similarity=0.048 Sum_probs=208.9
Q ss_pred CHHHHHHHHhcCCCC--C-cccHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHhhccCChHHHHHHH
Q 010031 245 DLKKAGELFEQMPEK--G-VVSWTAMINGFSQNGEAEKALAMFFQMLDAG--VRANDFTVVSALSACAKVGALEAGVRVH 319 (520)
Q Consensus 245 ~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (520)
+..+|...|..+.+. | ......+..+|...+++++|.++|+.+.+.. ..-+...|.+.+..+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 567888888885442 3 2455668889999999999999999988752 122456677766554332 222222
Q ss_pred HH-HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 010031 320 NY-ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395 (520)
Q Consensus 320 ~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 395 (520)
.+ +.+. -+..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+.+-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 22 2222 2567899999999999999999999999998873 457889999999999999999999999876 566
Q ss_pred CHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHH
Q 010031 396 DGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGAL 471 (520)
Q Consensus 396 ~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 471 (520)
... .|-.+...|.+.++++.|.-.|+++.+ +.| +..+...++..+-+.|+.++|+.+++++.. +.|+..-...
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 555 888888899999999999999999985 445 456777888999999999999999999764 4466666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 472 FCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 472 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+..+...+++++|+..+|++.++-|++..++..+|.+|.+.|..+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 777888999999999999999999999999999999999999865
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-10 Score=107.01 Aligned_cols=281 Identities=13% Similarity=0.141 Sum_probs=176.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCc-------ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-----------
Q 010031 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGV-------VSWTAMINGFSQNGEAEKALAMFFQMLDAGVR----------- 293 (520)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~----------- 293 (520)
.|..+...|-..|+++.|..+|++..+-+- .+|......-.+..+++.|+++++......-.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 467788889999999999999999876542 35666666667788888998888776532111
Q ss_pred C------CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCh-
Q 010031 294 A------NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE----KDL- 362 (520)
Q Consensus 294 p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~- 362 (520)
+ +...|...+..--..|-++....+|+.+.+..+. ++.+.......+....-++++.+++++-.. |++
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1 1122334444445567888888899999887764 344433344455667778999999998776 555
Q ss_pred hHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHccCcHHHHHHHHHHcHhhcCCCCC--hhH
Q 010031 363 LTWTAMIWGLAI---HGRYEQAIQYFKKMMYSGTEPDGTVFLAIL--TACWYSGQVKLALNFFDSMRFDYFIEPS--VKH 435 (520)
Q Consensus 363 ~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 435 (520)
..|+..+.-+.+ ....+.|..+|++..+ |.+|...-+..|+ ..-.+-|.-..|+.+++++.. ++++. ...
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~m 624 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 367776665554 2468999999999998 6777665322222 223346888889999998763 34443 245
Q ss_pred HHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHhcC-CCC-CcchhHHHHhhh
Q 010031 436 HTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWG---ALFCACRTHKDTKIAKIALQSSCSL-NLS-IPQAMSYCQTFM 509 (520)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~~~ 509 (520)
||..|.--...=-......+++++.+ -|+...-. -+...-.+.|..+.|..+|.-.-++ +|. ++..|...-.+-
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FE 704 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFE 704 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHH
Confidence 66655433322222333444444433 24433222 2223345678888888888777765 443 445555555555
Q ss_pred hhccCCC
Q 010031 510 QQKGDGR 516 (520)
Q Consensus 510 ~~~g~~~ 516 (520)
-+.|+.+
T Consensus 705 vrHGned 711 (835)
T KOG2047|consen 705 VRHGNED 711 (835)
T ss_pred HhcCCHH
Confidence 5666654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.7e-12 Score=110.68 Aligned_cols=215 Identities=12% Similarity=0.048 Sum_probs=138.1
Q ss_pred HHhCCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 010031 271 FSQNGEAEKALAMFFQMLDAGV--RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348 (520)
Q Consensus 271 ~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 348 (520)
.-...++++|+.+|+++.+... --|..+|..++-.-.....+ .++..-.-.-.+-.+.|+..+.+.|.-.++.+
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL----s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL----SYLAQNVSNIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH----HHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence 3445566666666666665421 01334555444332221111 11111111111234456666677777777788
Q ss_pred HHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 349 AASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 349 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
+|...|+...+- ....|+.+.+-|...++...|++-|+++++ +.| |...|-.|.++|...+...=|+-+|++..
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 888888877662 335777788888888888888888888877 444 45578888888888888888888888776
Q ss_pred hhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
+ . -|.|...|.+|.++|.+.++.++|++.|.+... .-+...+..+...+.+.++..+|.+.+++-++
T Consensus 426 ~-~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 426 E-L-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred h-c-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4 2 244567788888888888888888888877654 23446777777788888888888888887776
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-11 Score=105.45 Aligned_cols=283 Identities=13% Similarity=0.070 Sum_probs=180.0
Q ss_pred cCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 010031 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGEL 252 (520)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~ 252 (520)
.|++.+|++.+.+-.+.+ +.....|..-.++.-+.|+.+.+-.++.+..++ +....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 566777777666655544 222333444445555566666666666665551 222333344444555555555544
Q ss_pred HhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCC
Q 010031 253 FEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329 (520)
Q Consensus 253 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (520)
++++.+ ..........++|.+.|++.....++.+|.+.|.-.++..-. .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------L 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------H
Confidence 444332 223444445555555555555555555555554332221100 0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010031 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 406 (520)
...++..+++-....+..+.-...|+.... .++..-..++.-+...|+.++|.++.++..+++..|+.. ..-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHh
Confidence 112334444444444445555556666654 356666777888889999999999999999988877722 2234
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAK 485 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 485 (520)
+.+-++...-++..++-.+..+. ++..+..|...|.+.+.+.+|.+.|+.... .|+..+|..+..++.+.|+.++|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 67788888888888887655543 446888999999999999999999998655 799999999999999999999999
Q ss_pred HHHHHHhcC
Q 010031 486 IALQSSCSL 494 (520)
Q Consensus 486 ~~~~~~~~~ 494 (520)
+..++++-+
T Consensus 382 ~~r~e~L~~ 390 (400)
T COG3071 382 QVRREALLL 390 (400)
T ss_pred HHHHHHHHH
Confidence 999999853
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-11 Score=109.41 Aligned_cols=249 Identities=14% Similarity=0.006 Sum_probs=202.7
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (520)
....-.+-+...+++.+..++++...+.. +++...+..-|.++...|+..+-..+=..+.+.- +..+.+|-++.-.|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHH
Confidence 34445556778899999999999998873 6666677777778888898888777777777654 567788999999999
Q ss_pred hcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHH
Q 010031 343 KCGNIEAASLVFGETKEKD---LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALN 418 (520)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~ 418 (520)
-.|+.++|++.|.+...-| ...|-.+..+|+-.|..++|+..|..+.+. -|.. ..+..+.--|.+.++...|.+
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHH
Confidence 9999999999999876533 358999999999999999999999888763 3322 244455556888999999999
Q ss_pred HHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--------CC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010031 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--------TP-DFVIWGALFCACRTHKDTKIAKIALQ 489 (520)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 489 (520)
+|.+...- .|.|+...+-+.-+....+.+.+|..+|+.... ++ =..+++.|..+|++.+.+++|+..++
T Consensus 402 Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 402 FFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 99998742 355677888888888899999999999987653 12 23468889999999999999999999
Q ss_pred HHhcCCCCCcchhHHHHhhhhhccCCCc
Q 010031 490 SSCSLNLSIPQAMSYCQTFMQQKGDGRT 517 (520)
Q Consensus 490 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 517 (520)
+++.+.|.+++++..+|.+|...|..+.
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDK 507 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHH
Confidence 9999999999999999999999998764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-12 Score=121.55 Aligned_cols=279 Identities=12% Similarity=0.043 Sum_probs=189.2
Q ss_pred HhcCChhHHHHHhccCCCCCCCCCchh-HHHHHHHHHhcCChhHHHHHHhhCCC--CCH--HHHHHHHHHHHhcCCHHHH
Q 010031 175 VQLGKTRGAFKVFDETPEKNKSESVLL-WNVLINGCSKIGYLRKAVELFGMMPK--KNV--ASWVSLIDGFMRKGDLKKA 249 (520)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a 249 (520)
...|+++.|.+.+.+..+. .|++.. +-....++.+.|+.+.|..++.+..+ |+. .........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3467888888877766554 343333 33345666777888888888877654 443 2333456777778888888
Q ss_pred HHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHh---hccCChHHHHHHHHHH
Q 010031 250 GELFEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV-SALSAC---AKVGALEAGVRVHNYI 322 (520)
Q Consensus 250 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~ 322 (520)
...++.+.+. +...+..+...+...|++++|.+.+..+.+.++.+ ...+. .-..++ ...+..+.+.+.+..+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888877653 34567788888889999999999999888876433 33221 111111 2222333333455544
Q ss_pred HHcCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010031 323 SCNDF---GLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLT---WTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394 (520)
Q Consensus 323 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 394 (520)
.+... +.++..+..++..+...|+.++|.+++++..+ |+... ...........++.+.+.+.+++..+. .
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--V 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--C
Confidence 44332 13778888888999999999999999988776 33321 122222233457788889999888773 5
Q ss_pred CCHH---HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhC
Q 010031 395 PDGT---VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 395 p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
|+.. ...++...|.+.|++++|.+.|+... .....|+...+..+...+.+.|+.++|.+++++.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVA-ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH-HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5544 55678889999999999999999533 2334789888889999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-11 Score=104.26 Aligned_cols=213 Identities=14% Similarity=0.150 Sum_probs=121.7
Q ss_pred hcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC-CCHH------HHHHHHHHHHhcCCHHH
Q 010031 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK-KNVA------SWVSLIDGFMRKGDLKK 248 (520)
Q Consensus 176 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~------~~~~l~~~~~~~~~~~~ 248 (520)
-.++.++|.+.|-+|.+.. +.+..+.-+|.+.|-+.|..|.|+++.+.+.+ ||.. ....|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3567777777777777653 44455556677777777788888777777666 4331 23455666777788888
Q ss_pred HHHHHhcCCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHhhccCChHHHHHHHHH
Q 010031 249 AGELFEQMPEKGV---VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF----TVVSALSACAKVGALEAGVRVHNY 321 (520)
Q Consensus 249 a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~ 321 (520)
|+.+|..+.+.+. .+...|+..|-...+|++|+++-+++.+.+..+... .|--+...+....+++.|...+.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8888887776443 355667777888888888888888777765444322 222333344445566666666666
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL----TWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
..+.+.+ ....-..+.+.+...|+++.|.+.++.+.+.|.. +...|..+|...|+.++....+.++.+
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6554421 2222223334444444444444444444443321 233344444444444444444444444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-10 Score=99.78 Aligned_cols=283 Identities=10% Similarity=0.021 Sum_probs=208.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010031 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV---SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304 (520)
Q Consensus 228 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 304 (520)
.|+.....+..++...|+.++|+..|++....|+. ......-.+.+.|+.++...+...+.... .-....|..-..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 56667778888888888888888888877655433 23333445667888888887777776532 122222323333
Q ss_pred HhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHH
Q 010031 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQA 381 (520)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a 381 (520)
......+++.|..+-++.++.+. .+...+-.-..++...+++++|.-.|+.... | +..+|..|+.+|...|+..+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 34566788888888888876653 3455555556778889999999999987654 3 678999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH-HHH-HccCcHHHHHHHHHHcHhhcCCCCCh-hHHHHHHHHHhccCChHHHHHHHhh
Q 010031 382 IQYFKKMMYSGTEPDGTVFLAIL-TAC-WYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQVDKALNFINK 458 (520)
Q Consensus 382 ~~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (520)
...-+...+. +..+..+...+. ..| .....-++|.+++++..+ +.|+- ...+.+.+.+...|+.++++.++++
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 9888776663 233444554442 222 233445789999988764 46763 4667888999999999999999998
Q ss_pred CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 459 MPE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 459 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
... -||....+.|...+...+.+++|++.|..++.++|++-.+..-+-..-.+..+++
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~~D 522 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDESD 522 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCCCC
Confidence 655 6899999999999999999999999999999999999999888877776666554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-11 Score=103.59 Aligned_cols=287 Identities=13% Similarity=0.101 Sum_probs=160.0
Q ss_pred CCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCh------hHHHHHHHHHHhcCCh
Q 010031 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA------FVRVHLADMYVQLGKT 180 (520)
Q Consensus 107 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~ 180 (520)
+++.++|++.|-+|.+.. +-+..+..+|.+.|.+.|..+.|.+++..+.++ ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 467889999999888722 123335556677778888999999998888774 332 2344566778888888
Q ss_pred hHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 010031 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260 (520)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 260 (520)
|.|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+++.-|.
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA---------------------- 180 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA---------------------- 180 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH----------------------
Confidence 88888888887754 4445667778888888888888888777666533322222211
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 010031 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (520)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (520)
..|.-+...+....+.+.|..++.+..+.+ +-+...-..+.+.....|+++.|.+.++.+.+.+...-+.+...|..+
T Consensus 181 -qfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 181 -QFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred -HHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 112223333333444444444444444432 111222222333444445555555555555544444444444555555
Q ss_pred HHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCcHHH
Q 010031 341 YAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY---SGQVKL 415 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~ 415 (520)
|.+.|+.++...++..+.+ ++...-..+...-....-.+.|..++.+-.. -+|+...+..++..-.. .|...+
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~ 336 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKE 336 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhh
Confidence 5555555555555554443 2333333333333334444555555444443 26777777777765432 233444
Q ss_pred HHHHHHHcH
Q 010031 416 ALNFFDSMR 424 (520)
Q Consensus 416 a~~~~~~~~ 424 (520)
..-.++.|.
T Consensus 337 sL~~lr~mv 345 (389)
T COG2956 337 SLDLLRDMV 345 (389)
T ss_pred hHHHHHHHH
Confidence 445555554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-10 Score=103.98 Aligned_cols=440 Identities=11% Similarity=0.077 Sum_probs=235.9
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHH--HHH--HHHhCCCh
Q 010031 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNV--LIR--GLAENSHF 110 (520)
Q Consensus 35 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--li~--~~~~~~~~ 110 (520)
+......|++++|.+...+++..+ +.+...+..-+-+..+.+.+++|+.+.+.-... .+++. +=+ +..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 333444457888888888888776 344555555555678888888888666543321 11111 123 33467888
Q ss_pred hHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCChhhHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhHHHHHhc
Q 010031 111 QSCISHFVFMLRLSVRPNRL-TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY-DAFVRVHLADMYVQLGKTRGAFKVFD 188 (520)
Q Consensus 111 ~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 188 (520)
++|+..++ |..++.. +...-...+.+.|++++|..+|+.+.+.+.+. +...-..++.+- -...+. +.+
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~-~~q 165 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ-LLQ 165 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH-HHH
Confidence 88888877 3333332 55555567778888888888888887765321 111111221111 111111 222
Q ss_pred cCCCCCCCCCchhHHHHH---HHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHH
Q 010031 189 ETPEKNKSESVLLWNVLI---NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265 (520)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 265 (520)
..... | ..+|..+. -.++..|++.+|+++++...+.-..+ + ..++.. -.++-.++ -..-.
T Consensus 166 ~v~~v---~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-------l-~~~d~~-eEeie~el----~~Irv 228 (652)
T KOG2376|consen 166 SVPEV---P-EDSYELLYNTACILIENGKYNQAIELLEKALRICREK-------L-EDEDTN-EEEIEEEL----NPIRV 228 (652)
T ss_pred hccCC---C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-------h-cccccc-hhhHHHHH----HHHHH
Confidence 22221 1 23443333 33456777777777776552100000 0 000000 00000000 01223
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH---HhhccCChHH--HHHHH------------HHHHHcCCC
Q 010031 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS---ACAKVGALEA--GVRVH------------NYISCNDFG 328 (520)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~---~~~~~~~~~~--a~~~~------------~~~~~~~~~ 328 (520)
.+..++...|+.++|..+|...+..+ ++|......... +.....++.. +...+ ..+.... .
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k 306 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-K 306 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-H
Confidence 34556667788888888887777764 444432222211 1111111111 11111 1111100 0
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-hhHHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 010031 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKD-LLTWTAMIWGLA--IHGRYEQAIQYFKKMMYSGTEPDG--TVFLAI 403 (520)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l 403 (520)
.....-+.++..| .+..+.+.++........ ...+.+++..+. +...+..+.+++....+. .|.. .+....
T Consensus 307 ~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~ 382 (652)
T KOG2376|consen 307 QAIYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLR 382 (652)
T ss_pred HHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHH
Confidence 0111112333333 355667777777666532 334444544433 223577888888887764 4443 355556
Q ss_pred HHHHHccCcHHHHHHHHH--------HcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--------CCC-HH
Q 010031 404 LTACWYSGQVKLALNFFD--------SMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--------TPD-FV 466 (520)
Q Consensus 404 ~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~-~~ 466 (520)
+......|++..|.+++. .+. +.+..|- +...+...+.+.++-+.|..++.+... ++. ..
T Consensus 383 aQl~is~gn~~~A~~il~~~~~~~~ss~~-~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~ 459 (652)
T KOG2376|consen 383 AQLKISQGNPEVALEILSLFLESWKSSIL-EAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLS 459 (652)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhhhhhh-hhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHh
Confidence 666788999999999999 444 2333444 445677778887776666666555432 221 22
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 467 IWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
++.-+...-.+.|+.++|..+++++++.+|++..++..+..+|....
T Consensus 460 ~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 460 LMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC
Confidence 34444444567799999999999999999999999999888887643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-10 Score=102.13 Aligned_cols=276 Identities=11% Similarity=0.069 Sum_probs=178.1
Q ss_pred CCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 010031 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186 (520)
Q Consensus 107 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 186 (520)
.|+|.+|..+..+-.+.+-.|- ..|..-.++.-..|+.+.+-..+.+..+.-..++....-.........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5788888888877766554332 235555566667788888888888877753345566677777778888888888888
Q ss_pred hccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC----CCH-------HHHHHHHHHHHhcCCHHHHHHHHhc
Q 010031 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNV-------ASWVSLIDGFMRKGDLKKAGELFEQ 255 (520)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 255 (520)
++++.+.+ +.++.......++|.+.|++.....++..+.+ .+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777664 55667777778888888888888888887776 121 2556666666666666666666666
Q ss_pred CCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChh
Q 010031 256 MPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332 (520)
Q Consensus 256 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 332 (520)
... .++..-..++.-+...|+.++|.++..+..+.+..|+. ...-.+.+.++...-++..+...+.. +.++.
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~ 329 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPL 329 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCChh
Confidence 653 34555666777777888888888888877777655551 11223445566665555555544332 23445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 389 (520)
.+.+|...|.+.+.+.+|.+.|+...+ ++..+|+.+..++.+.|+..+|.+.+++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 556666666666666666666654443 455556666666666666666665555544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.8e-12 Score=106.62 Aligned_cols=240 Identities=13% Similarity=0.096 Sum_probs=199.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 010031 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344 (520)
Q Consensus 265 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 344 (520)
+.+.++|.+.|.+.+|.+.|+..++. .|.+.||..+-..|.+..+.+.|..++.+-.+. ++.+..........+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56788999999999999999988876 567778888999999999999999999888765 334555556677788888
Q ss_pred CCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 010031 345 GNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421 (520)
Q Consensus 345 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 421 (520)
++.++|.++++...+ .|+.....+...|.-.++++-|+.+|+++.+.|+. +...|..+.-+|.-.+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998776 35566666677788889999999999999999876 77889999999999999999999999
Q ss_pred HcHhhcCCCCC--hhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 010031 422 SMRFDYFIEPS--VKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 422 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 497 (520)
+... .-..|+ ..+|..+.......|++.-|.+.|+-... .| +...++.|.-.-.+.|++++|..++..+....|+
T Consensus 383 RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 8874 323454 46788899999999999999999998765 33 4668999998899999999999999999999998
Q ss_pred CcchhHHHHhhh
Q 010031 498 IPQAMSYCQTFM 509 (520)
Q Consensus 498 ~~~~~~~l~~~~ 509 (520)
-.+....++..-
T Consensus 462 m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 462 MAEVTTNLQFMS 473 (478)
T ss_pred ccccccceeEEe
Confidence 877766665543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-11 Score=107.80 Aligned_cols=194 Identities=15% Similarity=0.039 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHH
Q 010031 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLA 373 (520)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 373 (520)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+ .+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 334444455555555555555555554432 12334444445555555555555555544432 12334444445555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHH
Q 010031 374 IHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKA 452 (520)
Q Consensus 374 ~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 452 (520)
..|++++|...+++.......| ....+..+...+...|++++|...+++..... +.+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554421111 12233444444455555555555555544211 12233444455555555555555
Q ss_pred HHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 453 LNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 453 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
...+++... +.+...+..+...+...|+.++|....+.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 555544332 22333333444444455555555555444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8e-10 Score=106.31 Aligned_cols=266 Identities=12% Similarity=0.054 Sum_probs=191.4
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC----CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCC
Q 010031 49 QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP----KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124 (520)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 124 (520)
.++..+...|+.|+-.+|..++..||..|+++.|- +|.-|.- -+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46777888999999999999999999999999998 8876653 35567899999988888877665
Q ss_pred CCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCC-CCCCCCCchhHH
Q 010031 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP-EKNKSESVLLWN 203 (520)
Q Consensus 125 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~ 203 (520)
.|...||..|+.+|...|++..- +...+ ....+...+...|.-.....++..+. ..+.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~f----e~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILF----EVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHH----HHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---
Confidence 48888999999999999987762 22222 11123344555565555555554432 222333333
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCC---CCHHHHHHHHHHHHhc-CCHHHHHHHHhcCCC-CCcccHHHHHHHHHhCCChh
Q 010031 204 VLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRK-GDLKKAGELFEQMPE-KGVVSWTAMINGFSQNGEAE 278 (520)
Q Consensus 204 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 278 (520)
..+......|-++.+++++..+.. ...... .++-+... ..+++-........+ +++.+|.+++.+-..+|+.+
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 344455667888888888877765 111111 23333322 234444444444444 77889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 010031 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346 (520)
Q Consensus 279 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (520)
.|..++.+|.+.|++.+.+-|..++-+ .++...+..++.-|.+.|+.|+..|+...+..+..+|.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999999999999888888887755 78888899999999999999999999877777666554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-09 Score=103.79 Aligned_cols=441 Identities=12% Similarity=0.058 Sum_probs=278.3
Q ss_pred hcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCC
Q 010031 14 APTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93 (520)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 93 (520)
+.+..+..+++-|+..+|..++.-|+..|+.+.|- ++..|.-...+....+++.++....+.++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 34455677889999999999999999999999998 9998888888888999999999999999888775 688
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHH-hCCCCChhHHHHHHH
Q 010031 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK-SGVEYDAFVRVHLAD 172 (520)
Q Consensus 94 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 172 (520)
..+|..|..+|.+.||... ++..++ ....+...+...|.-.....++..+.= -+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8999999999999999766 333332 122244445555555544444443211 12223332 3444
Q ss_pred HHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHh-cCChhHHHHHHhhCCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 010031 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK-IGYLRKAVELFGMMPK-KNVASWVSLIDGFMRKGDLKKAG 250 (520)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 250 (520)
.....|-++.+.+++..+...... .+... .++-+.. ...+++-..+.....+ +++.++.+++.+-...|+++.|.
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 455667788888888776653211 11111 2333333 3345666666666666 99999999999999999999999
Q ss_pred HHHhcCCCCCc-----ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHH-----------
Q 010031 251 ELFEQMPEKGV-----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA----------- 314 (520)
Q Consensus 251 ~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~----------- 314 (520)
.++.+|.+.+. ..|-.++. .++...+..++.-|.+.|+.|+..|+...+..+.+.|....
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g----~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~ 300 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG----INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGF 300 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc----CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhh
Confidence 99999998873 23433333 78888899999999999999999998877766665433111
Q ss_pred -------------HHHHHHH------------HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-------Ch
Q 010031 315 -------------GVRVHNY------------ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-------DL 362 (520)
Q Consensus 315 -------------a~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~ 362 (520)
|.+.++. ..=.|+.....+|...+. ...+|.-++..++...+..| ++
T Consensus 301 tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V 379 (1088)
T KOG4318|consen 301 TAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNV 379 (1088)
T ss_pred hHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchH
Confidence 1111111 000133333333433222 23356666666666655543 33
Q ss_pred hHHHHHHHHHHHcCC----------------------HHHHHHHHHHHHHCCCCCCH-----------------------
Q 010031 363 LTWTAMIWGLAIHGR----------------------YEQAIQYFKKMMYSGTEPDG----------------------- 397 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~~~~p~~----------------------- 397 (520)
..|..++.-|.+.-+ ..+..+.... ..||.
T Consensus 380 ~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~ 454 (1088)
T KOG4318|consen 380 DAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLI 454 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhh
Confidence 344444433332211 1111111111 12221
Q ss_pred -----HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCC-----CCHHH
Q 010031 398 -----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET-----PDFVI 467 (520)
Q Consensus 398 -----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~ 467 (520)
..-+.++..|++.-+..+++..-++.. +.-+ ...|..|+..+....+.+.|..+.++...+ -|..-
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~ 530 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPL 530 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHh
Confidence 123445555555555556555444443 2211 257788888888888888888888887642 34445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 468 WGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 468 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
+..+.+.+.+.+....+..+++++.+.
T Consensus 531 m~~l~dLL~r~~~l~dl~tiL~e~ks~ 557 (1088)
T KOG4318|consen 531 MTSLQDLLQRLAILYDLSTILYEDKSS 557 (1088)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHH
Confidence 667777788888888888888888763
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-10 Score=101.70 Aligned_cols=191 Identities=14% Similarity=0.179 Sum_probs=103.5
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (520)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...+++..+... .+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHH
Confidence 45555556666666666666666655542 22344455555555666666666666666555432 23344555555566
Q ss_pred hcCCHHHHHHHHhcCCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHH
Q 010031 343 KCGNIEAASLVFGETKEK-----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLA 416 (520)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 416 (520)
..|++++|.+.++..... ....+..+..++...|++++|...+++..+. .|+ ...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHH
Confidence 666666666666554431 2234444555556666666666666665553 232 33555555556666666666
Q ss_pred HHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhC
Q 010031 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
...+++.... .+.+...+..++..+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666665532 1233444445555555666666666555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-09 Score=100.85 Aligned_cols=430 Identities=15% Similarity=0.085 Sum_probs=255.7
Q ss_pred hCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCC-CcccH
Q 010031 57 HNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTY 132 (520)
Q Consensus 57 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~ 132 (520)
..+.-|+.+|..+.-+....|+++.+.+.|++..+ .....|+.+-..+...|.-..|+.+++.-......| +...+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34556888999998889999999999999998765 344578888888999999999999998876543234 33344
Q ss_pred HHHHHHHh-ccCChhhHHHHHHHHHHhC--C--CCChhHHHHHHHHHHhc-----------CChhHHHHHhccCCCCCCC
Q 010031 133 PFVSKSVA-SLSLLSLGRGLHCLIVKSG--V--EYDAFVRVHLADMYVQL-----------GKTRGAFKVFDETPEKNKS 196 (520)
Q Consensus 133 ~~ll~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~ 196 (520)
...-..|. +.+..+++...-.+++... . ...+..|..+.-+|... ....++++.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 43444443 4567777777766666521 1 12333444444444321 12345666777776654 3
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHhhCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcccHHHHHH
Q 010031 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK---GVVSWTAMIN 269 (520)
Q Consensus 197 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~ 269 (520)
.|+.....+.--|+..++++.|+...++..+ .+...|..+.-.+...+++.+|+.+.+..... |......-+.
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 3444444444556677778888777776654 45667777777777777777777776654321 1111111112
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHH--cCCCCChhHHHHHHHHHH---hc
Q 010031 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC--NDFGLKGAIGTALVDMYA---KC 344 (520)
Q Consensus 270 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~---~~ 344 (520)
.-..-++.++++.....++.. --+...+. ..++-....+....+.- ....-...++..+..... +.
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~--we~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLAL--WEAEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHH--HHhhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence 222356666666665555431 00000000 00111111111111100 011111222222222111 11
Q ss_pred CCHHHHHHHHhcCCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHH
Q 010031 345 GNIEAASLVFGETKEKD------LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLAL 417 (520)
Q Consensus 345 ~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~ 417 (520)
-..+.....+.....|+ ...|......+.+.++.++|...+.+... +.|-.. .|......+...|...+|.
T Consensus 627 ~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 627 AGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred cccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHH
Confidence 11111111111122222 23566677778888888899888888776 445443 6666666777888899999
Q ss_pred HHHHHcHhhcCCCCC-hhHHHHHHHHHhccCChHHHHH--HHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010031 418 NFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQVDKALN--FINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSC 492 (520)
Q Consensus 418 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 492 (520)
+.|..... +.|+ +.+..++..++.+.|+..-|.. ++..+.. +-+...|..+...+.+.|+.+.|.+.|.-++
T Consensus 705 ~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 705 EAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 98888763 4555 5677889999999998777766 7777665 3457789999999999999999999999999
Q ss_pred cCCCCCcch
Q 010031 493 SLNLSIPQA 501 (520)
Q Consensus 493 ~~~p~~~~~ 501 (520)
++++.+|..
T Consensus 782 qLe~S~PV~ 790 (799)
T KOG4162|consen 782 QLEESNPVL 790 (799)
T ss_pred hhccCCCcc
Confidence 988887753
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.4e-09 Score=88.88 Aligned_cols=438 Identities=10% Similarity=0.036 Sum_probs=211.1
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChh
Q 010031 35 ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQ 111 (520)
Q Consensus 35 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 111 (520)
+.-+.+..|++.|..+++.....+..-...+-.=+..++-+.|++++|+.++.-+.. ++...+-.+...+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 344455667778877777665444322222222233445578888888888876543 44455555555555567777
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCC
Q 010031 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191 (520)
Q Consensus 112 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 191 (520)
+|..+-.+..+ ++-.-..++....+.++-++.....+.+.. +..--.+|.+.....-.+.+|++++.+..
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776555422 222233344444566666666555555433 22333445555556667888899888877
Q ss_pred CCCCCCCchhHHH-HHHHHHhcCChhHHHHHHhhCCC--CCHH-HHHHHHHHHHh--cCCHHHHHHHHhcCCCCCcccHH
Q 010031 192 EKNKSESVLLWNV-LINGCSKIGYLRKAVELFGMMPK--KNVA-SWVSLIDGFMR--KGDLKKAGELFEQMPEKGVVSWT 265 (520)
Q Consensus 192 ~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~ 265 (520)
.. .|+-...|. +.-+|.+..-++-+.+++....+ ||.. .-|.......+ .|+..+ .-..++.......|.
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae--~E~k~ladN~~~~~~ 254 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE--DEKKELADNIDQEYP 254 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH--HHHHHHHhcccccch
Confidence 65 344444443 44567777777777777766554 4432 33333322222 222211 111111111111111
Q ss_pred HHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHH-
Q 010031 266 AMINGFSQN-----GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD- 339 (520)
Q Consensus 266 ~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 339 (520)
.+.-+++. .+-+.|++++-.+.+. .|.. -..++--|.+.+++.+|..+.+++.- ..|...+...++.
T Consensus 255 -f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~a 327 (557)
T KOG3785|consen 255 -FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFA 327 (557)
T ss_pred -hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHH
Confidence 11111111 1234455554444332 2221 12233335555666666555543320 0111111111111
Q ss_pred ----HHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 010031 340 ----MYAKCGNIEAASLVFGETKE-----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410 (520)
Q Consensus 340 ----~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 410 (520)
-........-|.+.|+-.-. ..+.--.++..++.-..++++.+..+.....- +.-|...-..+..+.+..
T Consensus 328 alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~at 406 (557)
T KOG3785|consen 328 ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLAT 406 (557)
T ss_pred HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHh
Confidence 11111223344444443332 12222334444455555566666655555543 222223333455666666
Q ss_pred CcHHHHHHHHHHcHhhcCCCCChhHH-HHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHH
Q 010031 411 GQVKLALNFFDSMRFDYFIEPSVKHH-TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF-CACRTHKDTKIAKIAL 488 (520)
Q Consensus 411 g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~ 488 (520)
|++.+|.++|-.+. ...+ .+..+| ..|.++|.++++.+-|.+++-++..+.+..+...++ ..|.+.+++--|-+.|
T Consensus 407 gny~eaEelf~~is-~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 407 GNYVEAEELFIRIS-GPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred cChHHHHHHHhhhc-Chhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666666665554 1111 222333 345566666666666666666555433333333333 3466666666666666
Q ss_pred HHHhcCCC
Q 010031 489 QSSCSLNL 496 (520)
Q Consensus 489 ~~~~~~~p 496 (520)
+.+-.++|
T Consensus 485 d~lE~lDP 492 (557)
T KOG3785|consen 485 DELEILDP 492 (557)
T ss_pred hHHHccCC
Confidence 66555555
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.3e-08 Score=90.90 Aligned_cols=27 Identities=11% Similarity=0.264 Sum_probs=11.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhh
Q 010031 96 IFNVLIRGLAENSHFQSCISHFVFMLR 122 (520)
Q Consensus 96 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 122 (520)
.|...+......+-++-++.+|++..+
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk 166 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLK 166 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 344444444444444444444444433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-10 Score=112.76 Aligned_cols=229 Identities=14% Similarity=0.081 Sum_probs=149.4
Q ss_pred ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhh---------ccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 010031 276 EAEKALAMFFQMLDAGVRAN-DFTVVSALSACA---------KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345 (520)
Q Consensus 276 ~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 345 (520)
.+++|...|++..+. .|+ ...+..+..++. ..+++++|...++++.+.+. .+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcc
Confidence 356788888887765 343 334444433332 23457788888888877653 45667777777888888
Q ss_pred CHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHH
Q 010031 346 NIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFD 421 (520)
Q Consensus 346 ~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~ 421 (520)
++++|...+++..+ | +...+..+..++...|++++|...++++.+ +.|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 88888888887665 3 445677788888888888888888888887 455543 33334445666788888888888
Q ss_pred HcHhhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcC---C
Q 010031 422 SMRFDYFIEPS-VKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFV-IWGALFCACRTHKDTKIAKIALQSSCSL---N 495 (520)
Q Consensus 422 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 495 (520)
++.... +|+ +..+..+..+|...|++++|...++++.. .|+.. .++.+...+...| ++|...++++++. .
T Consensus 431 ~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 876422 343 44566777888888888888888887654 34433 3444445566666 4777777777653 3
Q ss_pred CCCcchhHHHHhhhhhccCCC
Q 010031 496 LSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 496 p~~~~~~~~l~~~~~~~g~~~ 516 (520)
|.++.. ...+|.-.||++
T Consensus 507 ~~~~~~---~~~~~~~~g~~~ 524 (553)
T PRK12370 507 DNNPGL---LPLVLVAHGEAI 524 (553)
T ss_pred hcCchH---HHHHHHHHhhhH
Confidence 444433 444554445433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9e-09 Score=97.97 Aligned_cols=353 Identities=15% Similarity=0.044 Sum_probs=239.4
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC----CC-HHHH
Q 010031 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KN-VASW 233 (520)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~ 233 (520)
.+..|..+|..|.-+....|+++.+.+.|++.... .-.....|+.+...+...|.-..|..+++.... |+ ...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 45678889999999999999999999999887654 234567888888899999999999999988776 22 2333
Q ss_pred HHHHHHHH-hcCCHHHHHHHHhcCCC-----C---CcccHHHHHHHHHhC-----------CChhHHHHHHHHHHHcC-C
Q 010031 234 VSLIDGFM-RKGDLKKAGELFEQMPE-----K---GVVSWTAMINGFSQN-----------GEAEKALAMFFQMLDAG-V 292 (520)
Q Consensus 234 ~~l~~~~~-~~~~~~~a~~~~~~~~~-----~---~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~m~~~~-~ 292 (520)
...-..|. +.+..++++..-.++.. . ....|..+.-+|... ....++++.+++..+.+ -
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33333333 34666666555544432 1 134455555444332 12456777888877654 2
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC---------
Q 010031 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KD--------- 361 (520)
Q Consensus 293 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~--------- 361 (520)
.|+...| +.--|+..++++.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+.... ++
T Consensus 477 dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred CchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 3333333 3334667788999999999999887778889999998889999999999888775443 11
Q ss_pred ------------hhHHHHHHHHHHH-----------------------cCCHHHHHHHHHHH--------HHCC------
Q 010031 362 ------------LLTWTAMIWGLAI-----------------------HGRYEQAIQYFKKM--------MYSG------ 392 (520)
Q Consensus 362 ------------~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~--------~~~~------ 392 (520)
..|...++..+-. .++..+|.+....+ ...|
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 0122222111110 01111222222111 0011
Q ss_pred ---CC--CCH------HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 393 ---TE--PDG------TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 393 ---~~--p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
+. |+. ..|......+...++.++|...+.+.... .+.....|......+...|..++|.+.|.....
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 11 221 13445556677888889998888887642 244566788888888999999999999988664
Q ss_pred -CC-CHHHHHHHHHHHHHcCCHHHHHH--HHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 462 -TP-DFVIWGALFCACRTHKDTKIAKI--ALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 462 -~~-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.| ++.+..++...+.+.|+..-|.. ++..+++++|.++.+|.++|.++.+.||..
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 45 46788999999999998888888 999999999999999999999999999965
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.2e-12 Score=79.40 Aligned_cols=50 Identities=20% Similarity=0.473 Sum_probs=40.1
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 010031 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141 (520)
Q Consensus 92 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 141 (520)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888887764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-09 Score=96.51 Aligned_cols=230 Identities=13% Similarity=-0.021 Sum_probs=158.6
Q ss_pred CCChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 010031 274 NGEAEKALAMFFQMLDAG-VRAN--DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350 (520)
Q Consensus 274 ~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 350 (520)
.+..+.++.-+.+++... ..|+ ...|......+...|+.+.|...|+...+... .++..++.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 345667777777777542 2222 34466666778888999999999998887653 4678888899999999999999
Q ss_pred HHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhc
Q 010031 351 SLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427 (520)
Q Consensus 351 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 427 (520)
...|+...+ | +..+|..++.++...|++++|.+.+++..+ ..|+..........+...++.++|...+++....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 999988765 3 456788888899999999999999999988 4565442222222344578899999999776532
Q ss_pred CCCCChhHHHHHHHHHhccCChHHH--HHHHhhCCC-C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC-CC
Q 010031 428 FIEPSVKHHTVVVNLLSRVGQVDKA--LNFINKMPE-T-----PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNL-SI 498 (520)
Q Consensus 428 ~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~ 498 (520)
.+|+...+ .+. +...|+..++ .+.+.+... . .....|..+...+...|++++|+..|+++++.+| +.
T Consensus 195 -~~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 -LDKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CCccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 23433222 233 3334555433 333332221 1 2345788999999999999999999999999997 55
Q ss_pred cchhHHHHhhhhh
Q 010031 499 PQAMSYCQTFMQQ 511 (520)
Q Consensus 499 ~~~~~~l~~~~~~ 511 (520)
+.....+......
T Consensus 271 ~e~~~~~~e~~~~ 283 (296)
T PRK11189 271 VEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 5554444444443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.6e-08 Score=90.06 Aligned_cols=436 Identities=11% Similarity=0.051 Sum_probs=262.0
Q ss_pred hhhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccC-
Q 010031 12 AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT- 90 (520)
Q Consensus 12 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 90 (520)
.+...+.+.. ..|.+..+.....-.|...|+.++|....+..++.. .-+...|..+.-.+....++++|+++|....
T Consensus 26 gLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~ 103 (700)
T KOG1156|consen 26 GLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK 103 (700)
T ss_pred HHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 3344444444 446667777777777788888888888777776654 3355666666666677788888888888653
Q ss_pred --CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCc-ccHHHHHHHHhccCChhhHHHHHHHHHHhCC-CCChhH
Q 010031 91 --PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR-LTYPFVSKSVASLSLLSLGRGLHCLIVKSGV-EYDAFV 166 (520)
Q Consensus 91 --~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~ 166 (520)
+.|...|.-+--.-++.++++...+.-....+. .|+. ..|..+..+..-.|+...|..+++...+... .|+...
T Consensus 104 ~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~ 181 (700)
T KOG1156|consen 104 IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKED 181 (700)
T ss_pred cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH
Confidence 356677776666667777888877777777763 3433 4566677777778888888888888877652 355555
Q ss_pred HHHHH------HHHHhcCChhHHHHHhccCCCCCCCCCchhH-HHHHHHHHhcCChhHHHHHHhhCCC--CCHHHHHHHH
Q 010031 167 RVHLA------DMYVQLGKTRGAFKVFDETPEKNKSESVLLW-NVLINGCSKIGYLRKAVELFGMMPK--KNVASWVSLI 237 (520)
Q Consensus 167 ~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~ 237 (520)
+.... ....+.|.++.|.+.+..-... ..|...+ ..-...+.+.+++++|..++..+.. ||..-|...+
T Consensus 182 ~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l 259 (700)
T KOG1156|consen 182 YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGL 259 (700)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHH
Confidence 44332 3345677788887777655433 2222222 3345567788888999888888877 5555554443
Q ss_pred -HHHHhcCCHHHHH-HHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCh
Q 010031 238 -DGFMRKGDLKKAG-ELFEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312 (520)
Q Consensus 238 -~~~~~~~~~~~a~-~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 312 (520)
.++.+-.+.-++. .+|....+. ....-..=+.......-.+..-.++..+.+.|+++- +..+...|-.....
T Consensus 260 ~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~ 336 (700)
T KOG1156|consen 260 EKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKV 336 (700)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHh
Confidence 3333333333333 555544331 110000001111112223344556667777776553 33333333322222
Q ss_pred HHHHHHHHHHHH----cC----------CCCChhHH--HHHHHHHHhcCCHHHHHHHHhcCCCCChh---HHHHHHHHHH
Q 010031 313 EAGVRVHNYISC----ND----------FGLKGAIG--TALVDMYAKCGNIEAASLVFGETKEKDLL---TWTAMIWGLA 373 (520)
Q Consensus 313 ~~a~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~ 373 (520)
+-..++.-.+.. .| -+|....| -.+++.|-..|+++.|...++......+. .|..-.+.+.
T Consensus 337 ~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~k 416 (700)
T KOG1156|consen 337 AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFK 416 (700)
T ss_pred HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 211111111111 10 13444333 45677888899999999999988874332 4445567788
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhH--------HH--HHHHHH
Q 010031 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH--------HT--VVVNLL 443 (520)
Q Consensus 374 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~~--~l~~~~ 443 (520)
..|++++|..++++..+.. .||...-..-.....+++..++|.++.....+ .|. +... |- .=..+|
T Consensus 417 H~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr-~~~--~~~~~L~~mqcmWf~~E~g~ay 492 (700)
T KOG1156|consen 417 HAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTR-EGF--GAVNNLAEMQCMWFQLEDGEAY 492 (700)
T ss_pred hcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhh-ccc--chhhhHHHhhhHHHhHhhhHHH
Confidence 8899999999999988743 34444443566667788999999999988874 333 2211 11 113567
Q ss_pred hccCChHHHHHHHhhCC
Q 010031 444 SRVGQVDKALNFINKMP 460 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~ 460 (520)
.+.|++-.|++-|..+.
T Consensus 493 ~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 493 LRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 78888877776665543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-11 Score=77.06 Aligned_cols=50 Identities=26% Similarity=0.553 Sum_probs=43.3
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010031 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409 (520)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 409 (520)
||+.+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888864
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4e-10 Score=111.44 Aligned_cols=199 Identities=13% Similarity=0.036 Sum_probs=157.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH---------hcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCC
Q 010031 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYA---------KCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGR 377 (520)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 377 (520)
++.++|...+++..+... .+...+..+..+|. ..+++++|...+++..+ | +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 456789999999987653 24455655555544 23458899999998776 3 56788888889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-hHHHHHHHHHhccCChHHHHHH
Q 010031 378 YEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQVDKALNF 455 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 455 (520)
+++|...|+++.+ ..|+.. .+..+...+...|++++|...+++..+. .|+. ..+..++..+...|++++|+..
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999998 467654 7888888999999999999999999853 4543 2334455557778999999999
Q ss_pred HhhCCC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 456 INKMPE--TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 456 ~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
++++.. +|+ +..+..+..++...|+.++|...++++....|++......++..|...|+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 998754 354 44567777888899999999999999999999999999999999888876
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-07 Score=87.92 Aligned_cols=438 Identities=13% Similarity=0.061 Sum_probs=278.9
Q ss_pred CchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHH
Q 010031 43 STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVF 119 (520)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~ 119 (520)
.......+.+.+.+.- +-...+..-..-.+...|+-++|........+ .+.++|+.+.-.+-...++++|++.|..
T Consensus 22 QYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~n 100 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRN 100 (700)
T ss_pred HHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4455555555555532 22223332223335567899999988876654 5667899888888888999999999999
Q ss_pred hhhCCCCCCc-ccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCC-CCC
Q 010031 120 MLRLSVRPNR-LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-KSE 197 (520)
Q Consensus 120 m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~ 197 (520)
... +.||. ..+.-+--.-++.++++........+.+.. +.....|..++.++.-.|+...|..++++..+.. ..|
T Consensus 101 Al~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 101 ALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 988 44554 344444444467788888888887777743 2345678888888899999999999988877653 245
Q ss_pred CchhHHHHH------HHHHhcCChhHHHHHHhhCCC--CCHH-HHHHHHHHHHhcCCHHHHHHHHhcCCCCC--cccHHH
Q 010031 198 SVLLWNVLI------NGCSKIGYLRKAVELFGMMPK--KNVA-SWVSLIDGFMRKGDLKKAGELFEQMPEKG--VVSWTA 266 (520)
Q Consensus 198 ~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 266 (520)
+...+.... ....+.|..++|.+.+..-.. -|.. .--.-...+.+.+++++|..++..+..++ ...|..
T Consensus 178 s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~ 257 (700)
T KOG1156|consen 178 SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYE 257 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHH
Confidence 655554432 335667888888888876665 2332 23445677889999999999999987654 344443
Q ss_pred -HHHHHHhCCChhHHH-HHHHHHHHcCCCCCHHHHHH-HHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 010031 267 -MINGFSQNGEAEKAL-AMFFQMLDAGVRANDFTVVS-ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343 (520)
Q Consensus 267 -l~~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (520)
+..++.+-.+..++. .+|....+. .|-...-.. =+.......-.+....++....+.|+++ ++..+...|-.
T Consensus 258 ~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~ 332 (700)
T KOG1156|consen 258 GLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKD 332 (700)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhc
Confidence 444444333444444 556555443 221111111 1111222223344555666677777643 33333333322
Q ss_pred cCCHHHHHH----HHhcCC--------------CCChh--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHH
Q 010031 344 CGNIEAASL----VFGETK--------------EKDLL--TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLA 402 (520)
Q Consensus 344 ~~~~~~a~~----~~~~~~--------------~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~ 402 (520)
-...+-..+ +...+. .|... ++..+++.+-..|+++.|..+++..+.+ .|+.. .|..
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~ 410 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLV 410 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHH
Confidence 221111111 111111 12333 4455778888999999999999999984 78776 7777
Q ss_pred HHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCC-CH--------HHHHHHH-
Q 010031 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP-DF--------VIWGALF- 472 (520)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~--------~~~~~l~- 472 (520)
-.+.+...|+++.|..++++..+ . -.+|..+-..-+.-..++++.++|.+++....... +. -.|..+-
T Consensus 411 KaRI~kH~G~l~eAa~~l~ea~e-l-D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~ 488 (700)
T KOG1156|consen 411 KARIFKHAGLLDEAAAWLDEAQE-L-DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLED 488 (700)
T ss_pred HHHHHHhcCChHHHHHHHHHHHh-c-cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhh
Confidence 77889999999999999999974 2 25666555566777789999999999988876421 11 1344443
Q ss_pred -HHHHHcCCHHHHHHHHHHHhc
Q 010031 473 -CACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 473 -~~~~~~g~~~~A~~~~~~~~~ 493 (520)
.+|.+.|++..|++-+..+-+
T Consensus 489 g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 489 GEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hHHHHHHHHHHHHHHHHhhHHH
Confidence 458888888888877766643
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.4e-09 Score=88.89 Aligned_cols=404 Identities=9% Similarity=0.032 Sum_probs=220.7
Q ss_pred HHHHhcCCChHHHHHHhcccCC---CCcchHH-HHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCh
Q 010031 70 ISSASLHKSIDYALSIFDHFTP---KNLHIFN-VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145 (520)
Q Consensus 70 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~-~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 145 (520)
+.-+....++..|+.+++--.. ......+ .+...+.+.|++++|+..|..+.+.. .|+...+..|.-+..-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 4455566778888777764322 1111222 23445567788888888877766643 34444444454444456677
Q ss_pred hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhC
Q 010031 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225 (520)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 225 (520)
.+|..+-... +.++..-..|.....+.++-++-..+-+.+.+. ..--.+|.......-.+.+|+++|.+.
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7776655432 223333344445555666666555554444322 222334444444455667777777776
Q ss_pred CC--CCHHHHHH-HHHHHHhcCCHHHHHHHHhcCCC--CC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 010031 226 PK--KNVASWVS-LIDGFMRKGDLKKAGELFEQMPE--KG-VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299 (520)
Q Consensus 226 ~~--~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 299 (520)
.. |+....|. +.-+|.+..-++-+.++++--.+ || +++-|.......+.=.-..|.+-.+++.+.+-..-+..-
T Consensus 178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~ 257 (557)
T KOG3785|consen 178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE 257 (557)
T ss_pred HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH
Confidence 65 33333332 22345555555555555443321 22 334444444333332223333334444433211111100
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcC---
Q 010031 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG--- 376 (520)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~--- 376 (520)
..+-+-+.--.+-+.|.+++--+.+. -+..-..|+-.|.+.+++.+|..+.+++....+.-|-.-.-.++..|
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhc
Confidence 00001111123445666665544432 12233346667899999999999999887644443333233333333
Q ss_pred ----CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHH
Q 010031 377 ----RYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451 (520)
Q Consensus 377 ----~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 451 (520)
...-|...|+-.-+++..-|.. --.++..++.-..++++.+.++..+.. +- ..|....-.+..+++..|.+.+
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF-~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YF-TNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-cCcchhhhHHHHHHHHhcChHH
Confidence 3555667776665555544433 334455666777889999999999874 42 3333333468899999999999
Q ss_pred HHHHHhhCCCC--CCHHHHHHHH-HHHHHcCCHHHHHHHHHH
Q 010031 452 ALNFINKMPET--PDFVIWGALF-CACRTHKDTKIAKIALQS 490 (520)
Q Consensus 452 A~~~~~~~~~~--~~~~~~~~l~-~~~~~~g~~~~A~~~~~~ 490 (520)
|.++|-++..+ .|..+|.+++ ++|.+.|..+.|-+++-+
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 99999887752 3556666554 668889998877655433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-08 Score=92.10 Aligned_cols=412 Identities=13% Similarity=0.050 Sum_probs=238.4
Q ss_pred HHhcCCChHHHHHHhcccC---CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCChhh
Q 010031 72 SASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL-TYPFVSKSVASLSLLSL 147 (520)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~ 147 (520)
+....|+++.|+..|-+.. ++|-+.|..-..+|+..|++++|++=-.+-++ +.|+.. .|+....++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 3456778888888776543 45666777777778888888877776665555 456543 67777777777778888
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHH-----HHHHhcCChhHHHHHH
Q 010031 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI-----NGCSKIGYLRKAVELF 222 (520)
Q Consensus 148 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~ 222 (520)
|...|..-++.. +.+...++.+..++ ..+.+. +.. -.++..|..+. +.+.....+..-+..+
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 887777766643 23455666666666 111111 110 01122222111 1111111111111111
Q ss_pred hhCCCCCHHH---HHHHHHHHHhcCCHHH-HHHHHhc-----CCCC------------C----------cccHHHHHHHH
Q 010031 223 GMMPKKNVAS---WVSLIDGFMRKGDLKK-AGELFEQ-----MPEK------------G----------VVSWTAMINGF 271 (520)
Q Consensus 223 ~~~~~~~~~~---~~~l~~~~~~~~~~~~-a~~~~~~-----~~~~------------~----------~~~~~~l~~~~ 271 (520)
+.-.. +... ...++.+.......+. ....-.. +..| | ......+.++.
T Consensus 156 ~~~p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 156 QKNPT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred hcCcH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 11110 0000 0111111111000000 0000000 0000 0 12355667777
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHH-------HHHHHHHHhc
Q 010031 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-------TALVDMYAKC 344 (520)
Q Consensus 272 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~ 344 (520)
.+..++..|++-+....... -+..-++....++...|.+......-....+.|.. ...-| ..+..+|.+.
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhH
Confidence 77788888888888877753 33334445555677777777766666655554432 11111 2234466667
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHc
Q 010031 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSM 423 (520)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 423 (520)
++++.++..|.+...+... -....+....+++....+...- +.|... -...-...+.+.|++..|+..|.++
T Consensus 312 ~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred HhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 7788888887775442111 1112233444555555544443 344432 2222355678899999999999999
Q ss_pred HhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcch
Q 010031 424 RFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
+... +.|...|....-+|.+.|.+..|++-.+...+ .|+ ...|.--..++....++++|.+.|+++++.+|++..+
T Consensus 385 Ikr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 385 IKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 8532 55678999999999999999999998888765 344 4466666777888899999999999999999999999
Q ss_pred hHHHHhhhhh
Q 010031 502 MSYCQTFMQQ 511 (520)
Q Consensus 502 ~~~l~~~~~~ 511 (520)
...+..++..
T Consensus 463 ~~~~~rc~~a 472 (539)
T KOG0548|consen 463 IDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHH
Confidence 9999999886
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.1e-10 Score=91.00 Aligned_cols=143 Identities=16% Similarity=0.111 Sum_probs=64.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (520)
|.-.|...|+...|..-+++.++ ..|+.. ++..+...|.+.|+.+.|.+.|++..... +-+..+.|.....++..
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHHhC
Confidence 33444444444444444444444 234333 44444444444455444444444444211 12233444444444444
Q ss_pred CChHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 447 GQVDKALNFINKMPETPD----FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 447 g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
|++++|...|++....|. ..+|..+..+..+.|+.+.|...++++++++|++|.....++....+.|+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 455555544444433221 22444444444444555555555555555555444444444444444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=98.08 Aligned_cols=213 Identities=15% Similarity=0.111 Sum_probs=183.1
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHc
Q 010031 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIH 375 (520)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~ 375 (520)
-..+..+|.+.|.+.+|...++..++. .|.+.+|..|-+.|.+..+++.|+.++.+... | |+.....+.+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 356888999999999999999988776 46778888899999999999999999998876 4 444445677788889
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHH
Q 010031 376 GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454 (520)
Q Consensus 376 ~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (520)
++.++|.++|++..+. .|+ .....++...|.-.++.+-|+.+++++.+ .| ..++..|+.+.-++.-.++++-++.
T Consensus 304 ~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG-~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MG-AQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHH-hc-CCChHHHhhHHHHHHhhcchhhhHH
Confidence 9999999999999884 454 44777777888899999999999999985 55 3567889999999999999999999
Q ss_pred HHhhCCC---CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCCc
Q 010031 455 FINKMPE---TPD--FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRT 517 (520)
Q Consensus 455 ~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 517 (520)
-|++... .|+ ..+|..+.....-.||+..|.+.|+-++..+|++..+++.|+.+-.+.|+-+.
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~ 447 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILG 447 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHH
Confidence 9988764 244 56899999999999999999999999999999999999999999999998553
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-07 Score=85.95 Aligned_cols=168 Identities=8% Similarity=0.064 Sum_probs=100.1
Q ss_pred cchhhhhhcccccccCCCCCCCCCHHHHHHHHHhccCchHHHHHHHHHHHhCC-CC-ChHHHHHHHHHHh--cCCChHHH
Q 010031 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL-FA-SSRITTQLISSAS--LHKSIDYA 82 (520)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~--~~~~~~~A 82 (520)
+.+++|......+.... |.....+..-+-.+-..+++++|..+.+ ..+. .. .... +=.+|| +.+..++|
T Consensus 26 ~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~~~~~~~~~---fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGALLVINSFF---FEKAYCEYRLNKLDEA 98 (652)
T ss_pred hHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcchhhhcchhh---HHHHHHHHHcccHHHH
Confidence 45566666666666544 4445555555555666667777763333 2321 11 1111 234444 78999999
Q ss_pred HHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHH-hccCChhhHHHHHHHHHHhCCC
Q 010031 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV-ASLSLLSLGRGLHCLIVKSGVE 161 (520)
Q Consensus 83 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~ 161 (520)
+..++...+.+..+...-.+.+.+.+++++|+++|+.+.+.+. ++ +...+++- ...+-...+. .+......
T Consensus 99 lk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd---~d~~~r~nl~a~~a~l~~~----~~q~v~~v 170 (652)
T KOG2376|consen 99 LKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DD---QDEERRANLLAVAAALQVQ----LLQSVPEV 170 (652)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ch---HHHHHHHHHHHHHHhhhHH----HHHhccCC
Confidence 9999977666766777788899999999999999999988654 33 22222211 1111111111 12222222
Q ss_pred CChhHHH---HHHHHHHhcCChhHHHHHhccC
Q 010031 162 YDAFVRV---HLADMYVQLGKTRGAFKVFDET 190 (520)
Q Consensus 162 ~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~ 190 (520)
| ..+|. .....++..|++.+|+++++..
T Consensus 171 ~-e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 171 P-EDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred C-cchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2 22333 3455677899999999999877
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.5e-09 Score=83.77 Aligned_cols=202 Identities=11% Similarity=0.022 Sum_probs=140.8
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHc
Q 010031 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIH 375 (520)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 375 (520)
...+.-.|...|+...|..-+++.++.+ +.+..++..+...|.+.|..+.|.+.|++..+ .+-.+.|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3344455666677777777777666654 23455666666677777777777777766554 3445667777777888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-hhHHHHHHHHHhccCChHHHH
Q 010031 376 GRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 376 ~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 453 (520)
|++++|...|++....-.-|.. .+|..+.-+..+.|+.+.|.+.|++..+. .|+ ......+.....+.|++..|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHH
Confidence 8888888888888774333333 37888887778888888888888887752 333 446667778888888888888
Q ss_pred HHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHH
Q 010031 454 NFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504 (520)
Q Consensus 454 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 504 (520)
.++++... .++..+....+..-.+.||-+.+.+.=.++....|.++..-..
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF 246 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence 88887654 3566666666667778888888888777777888887765443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-07 Score=89.90 Aligned_cols=252 Identities=12% Similarity=0.047 Sum_probs=111.5
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC--CCcch-HHHHHHHHHhC---
Q 010031 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP--KNLHI-FNVLIRGLAEN--- 107 (520)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~--- 107 (520)
-++++...|+++.|...+....+. +.............+.+.|+.++|..++..+.. |+-.. |..+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 345566666666666666543322 233345555556666666666666666666544 22222 23333333111
Q ss_pred --CChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCh-hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHH
Q 010031 108 --SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL-SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184 (520)
Q Consensus 108 --~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 184 (520)
.+.+...++|+++... -|.......+.-.+.....+ ..+...+..+...|+ +.+++.|-..|......+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv---PslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV---PSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHcChhHHHHHH
Confidence 2345555566655442 14333333222222221111 233334444444443 224444444444333333333
Q ss_pred HHhccCC----CCC----------CCCCch--hHHHHHHHHHhcCChhHHHHHHhhCCC--CC-HHHHHHHHHHHHhcCC
Q 010031 185 KVFDETP----EKN----------KSESVL--LWNVLINGCSKIGYLRKAVELFGMMPK--KN-VASWVSLIDGFMRKGD 245 (520)
Q Consensus 185 ~~~~~~~----~~~----------~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~ 245 (520)
.++.... ..+ -+|+.. ++..+...|...|++++|+.++++..+ |+ +..|..-...+-+.|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 3332221 111 012221 223334444555555555555555544 32 3344555555555555
Q ss_pred HHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 010031 246 LKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291 (520)
Q Consensus 246 ~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 291 (520)
+++|.+.++....-| -..-+-.+..+.++|+.++|.+++......+
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 555555555544433 2233334444555555555555555544433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-09 Score=99.51 Aligned_cols=227 Identities=14% Similarity=0.110 Sum_probs=143.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHc-----C-CCCCHHH-HHHHHHHhhccCChHHHHHHHHHHHHc-----CC--CCChh
Q 010031 267 MINGFSQNGEAEKALAMFFQMLDA-----G-VRANDFT-VVSALSACAKVGALEAGVRVHNYISCN-----DF--GLKGA 332 (520)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~ 332 (520)
+...|...|+++.|..+++..++. | ..|...+ .+.+...|...+++++|..+|+++... |. +.-..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 444555555555555555444332 1 1222222 222444555666666666666655331 11 11123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC----------CCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH-
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKE----------KDL-LTWTAMIWGLAIHGRYEQAIQYFKKMMYS---GTEPDG- 397 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~- 397 (520)
+++.|..+|.+.|++++|...++...+ +.+ ..++.++..+...+++++|..++++..+. -+.++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 344555566666666666555544332 122 23556677788888899998888876542 122332
Q ss_pred ---HHHHHHHHHHHccCcHHHHHHHHHHcHhhc-----CCCCC-hhHHHHHHHHHhccCChHHHHHHHhhCCC-------
Q 010031 398 ---TVFLAILTACWYSGQVKLALNFFDSMRFDY-----FIEPS-VKHHTVVVNLLSRVGQVDKALNFINKMPE------- 461 (520)
Q Consensus 398 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 461 (520)
.++..|...|...|++.+|.++++++.... +..+. ...++.+...|.+.+++.+|.++|.+...
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 388999999999999999999999886432 11222 34677888999999999999888887542
Q ss_pred -CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 462 -TPD-FVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 462 -~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
.|+ ..+|..|..+|...|+++.|.++.++++.
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 244 35789999999999999999999999873
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.15 E-value=6e-08 Score=92.86 Aligned_cols=175 Identities=12% Similarity=-0.004 Sum_probs=98.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHc----C----------CCCCh--hHHHHHHHHHHh
Q 010031 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN----D----------FGLKG--AIGTALVDMYAK 343 (520)
Q Consensus 280 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~ 343 (520)
+..++..+...|+++ +|..+-..|...........++...... + -.|+. .++..+.+.|..
T Consensus 130 ~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 344455555666432 4444444455444444444444443321 0 11222 233555666777
Q ss_pred cCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 010031 344 CGNIEAASLVFGETKE--KD-LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420 (520)
Q Consensus 344 ~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 420 (520)
.|++++|.++++.... |. +..|..-...+-..|++.+|.+.++..+..... |...-+..+..+.++|++++|.+++
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777777776665 32 345666677777777777777777777764221 3344455556667777777777777
Q ss_pred HHcHhhcCCCCChhHH--------HHHHHHHhccCChHHHHHHHhhC
Q 010031 421 DSMRFDYFIEPSVKHH--------TVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 421 ~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
....+. +..|....+ ...+.+|.+.|++..|++.|..+
T Consensus 286 ~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 286 SLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777642 222322111 23456677777777776665544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-09 Score=93.59 Aligned_cols=229 Identities=12% Similarity=0.053 Sum_probs=148.0
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCC-CChhHHHHHHHHH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG-LKGAIGTALVDMY 341 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 341 (520)
....+.+++...|+++.++ .++.... .|.......+...+...++-+.+..-++........ .+..+.......+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3444556667777665433 3333322 555555555544444434444444444333222222 2223333334556
Q ss_pred HhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCcHHHHH
Q 010031 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY----SGQVKLAL 417 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 417 (520)
...|++++|.+++... .+.......+..+.+.++++.|.+.++.|.+ +..|.. ...+..++.. .+.+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHhCchhHHHHH
Confidence 6778899888888776 5667777788999999999999999999987 444543 3444444432 33689999
Q ss_pred HHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHhcC
Q 010031 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDT-KIAKIALQSSCSL 494 (520)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 494 (520)
-+|+++... +++++.+.+.++.+....|++++|.+++++... +.++.+...++.+....|+. +.+.+.+.++...
T Consensus 188 y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999998753 467888899999999999999999999988654 34566777888887888877 7788899998888
Q ss_pred CCCCcchh
Q 010031 495 NLSIPQAM 502 (520)
Q Consensus 495 ~p~~~~~~ 502 (520)
.|+.|-.-
T Consensus 266 ~p~h~~~~ 273 (290)
T PF04733_consen 266 NPNHPLVK 273 (290)
T ss_dssp TTTSHHHH
T ss_pred CCCChHHH
Confidence 99877554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-09 Score=96.01 Aligned_cols=202 Identities=15% Similarity=0.090 Sum_probs=144.7
Q ss_pred ccCChHHHHHHHHHHHHcCC-C--CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHH
Q 010031 308 KVGALEAGVRVHNYISCNDF-G--LKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQA 381 (520)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 381 (520)
..+..+.+...+.+++.... . .....+..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 33566777777777775321 1 2245677788889999999999999998765 3567899999999999999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 382 IQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 382 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
...|++..+ +.|+. .++..+..++...|++++|.+.+++..+. .|+......+...+...++.++|...+++..
T Consensus 118 ~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999998 57764 47888888899999999999999998853 4544322233334456788999999997644
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-------cCCCCCcchhHHHHhhhhhccCCC
Q 010031 461 ETPDFVIWGALFCACRTHKDTKIAKIALQSSC-------SLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 461 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
...++..|. ........|+..++ +.++.+. ++.|+.+.+|.++|.++.+.|+.+
T Consensus 193 ~~~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~ 253 (296)
T PRK11189 193 EKLDKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLD 253 (296)
T ss_pred hhCCccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 321222232 12233345555433 2333333 456778889999999999999865
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.8e-07 Score=78.14 Aligned_cols=339 Identities=12% Similarity=0.094 Sum_probs=169.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhCCCCC-CcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHH-HHHHH
Q 010031 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH-LADMY 174 (520)
Q Consensus 97 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 174 (520)
+.+.+..+++..++..|++++.--.+.. | +....+.+..+|....++..|...++++...- |...-|.. -...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 5555666666667777777666655532 3 44455555556666666777777777665532 33333221 23445
Q ss_pred HhcCChhHHHHHhccCCCCCCCCCchhHHHHHHH--HHhcCChhHHHHHHhhCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 010031 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLING--CSKIGYLRKAVELFGMMPK-KNVASWVSLIDGFMRKGDLKKAGE 251 (520)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 251 (520)
.+.+.+..|+++...|... |+...-..-+.+ ....+++..+..++++... .+..+.+...-...+.|+.+.|.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 5666666666666666542 111111111111 2234555555555555553 333333333333445555555555
Q ss_pred HHhcCCCCC----cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHH---HHH--HH
Q 010031 252 LFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR---VHN--YI 322 (520)
Q Consensus 252 ~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~---~~~--~~ 322 (520)
-|+...+-+ ...|+.-+ ++.+.|+++.|++...++++.|++..+.. ..|...+..+ +-+ .|
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPEl---------gIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPEL---------GIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCcc---------CccceeccCchhcccchHHH
Confidence 555544422 23343332 23344555555555555555554322210 0000000000 000 00
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 010031 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397 (520)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 397 (520)
..++ -...+|.-...+.+.|+++.|.+.+.+|+.+ |++|...+.-.= ..+++-+..+-++-+...+.- ..
T Consensus 236 h~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ 310 (459)
T KOG4340|consen 236 HQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PP 310 (459)
T ss_pred HHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-Ch
Confidence 0000 0112233334467889999999999999863 566655543221 235566666666666664332 34
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCC-CCChhHHHHHHHHHh-ccCChHHHHHHHhhC
Q 010031 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFI-EPSVKHHTVVVNLLS-RVGQVDKALNFINKM 459 (520)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 459 (520)
.||..++-.||+..-++.|-.++.+-.. ..+ -.+...|+ |++++. -.-..++|.+-++.+
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 5999999999999999988888765431 111 12233333 333333 334556665555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-07 Score=80.01 Aligned_cols=317 Identities=13% Similarity=0.112 Sum_probs=195.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHH---HHHHhcCChhHHHHHHhhCCC--CCHHHH-HHHHH
Q 010031 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI---NGCSKIGYLRKAVELFGMMPK--KNVASW-VSLID 238 (520)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~--~~~~~~-~~l~~ 238 (520)
.-..-+...+...|++..|+.-|....+. |+..|.++. ..|...|+...|+.-+.+..+ ||-..- ..-..
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 33444666667777777777777666654 333343332 345556666655555555544 332211 11123
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHH
Q 010031 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318 (520)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 318 (520)
.+.+.|.+++|..=|+.+.+.+.. +|...+|.+-+.... ........+..+...|+...++..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhhHHHH
Confidence 445555555555555554432210 000011100000000 011122334455667788888888
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 010031 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK---EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395 (520)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 395 (520)
...+++.. +.+...+..-..+|...|++..|+.-++... ..+...+.-+-..+...|+.+.++...++-.+ +.|
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldp 254 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDP 254 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCc
Confidence 88777654 3677777777888888888888876655443 35666666667777788888888888888777 577
Q ss_pred CHH-H---HHHH---------HHHHHccCcHHHHHHHHHHcHhhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHh
Q 010031 396 DGT-V---FLAI---------LTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQVDKALNFIN 457 (520)
Q Consensus 396 ~~~-~---~~~l---------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (520)
|.. . |..| +......+++.++++..+...+. .|. ...+..+-.++...|++-+|+....
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 764 2 2111 12234567888888888887643 343 2345567778888999999999999
Q ss_pred hCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 458 KMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 458 ~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
++.. .|+ ..++.--..+|.-...++.|+.-|+++.+.+|+|..+-.-+-.+
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~A 384 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERA 384 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 8775 454 66888888889999999999999999999999998876555443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-08 Score=95.40 Aligned_cols=221 Identities=14% Similarity=0.102 Sum_probs=166.2
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHc-----CC-CCCh-hHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C-
Q 010031 296 DFTVVSALSACAKVGALEAGVRVHNYISCN-----DF-GLKG-AIGTALVDMYAKCGNIEAASLVFGETKE-------K- 360 (520)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~- 360 (520)
..+...+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356667888999999999999999987654 21 1222 2234577889999999999999988764 1
Q ss_pred C---hhHHHHHHHHHHHcCCHHHHHHHHHHHHH---C--CCC-CCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcC--
Q 010031 361 D---LLTWTAMIWGLAIHGRYEQAIQYFKKMMY---S--GTE-PDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYF-- 428 (520)
Q Consensus 361 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~--~~~-p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 428 (520)
+ ..+++.|..+|.+.|++++|...+++..+ + |.. |... .++.+...|...+++++|..+++...+...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2 24788888999999999999988887654 1 222 2222 566777788999999999999987754221
Q ss_pred CCCC----hhHHHHHHHHHhccCChHHHHHHHhhCCC-------C--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 429 IEPS----VKHHTVVVNLLSRVGQVDKALNFINKMPE-------T--PD-FVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 429 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
+.++ ..+++.|...|...|++++|.++++++.. + +. ...++.+...|.+.+++++|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1222 36889999999999999999999998753 1 22 346778888899999999999999998653
Q ss_pred ----CCCCc---chhHHHHhhhhhccCCC
Q 010031 495 ----NLSIP---QAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 495 ----~p~~~---~~~~~l~~~~~~~g~~~ 516 (520)
.|++| ..+..|+..|...|+-+
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence 45544 56788999999999854
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.4e-07 Score=85.09 Aligned_cols=131 Identities=11% Similarity=0.015 Sum_probs=62.7
Q ss_pred cCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC-----------CCc-chHHHHHHHHHhCCC
Q 010031 42 NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP-----------KNL-HIFNVLIRGLAENSH 109 (520)
Q Consensus 42 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~-~~~~~li~~~~~~~~ 109 (520)
|+++.|.+-...+. +..+|..+.+++.+..+++-|.-++-.|.. .|. ..-......-...|.
T Consensus 742 G~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgM 815 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGM 815 (1416)
T ss_pred ccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhh
Confidence 45555544443332 235566666666666666666555554432 011 111112222344566
Q ss_pred hhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhcc
Q 010031 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189 (520)
Q Consensus 110 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 189 (520)
.++|..+|++-.+. ..+=..|-..|.|++|.++-+.=-+ + .=..||.....-+-..+|.+.|++.|++
T Consensus 816 lEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR--i-HLr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 816 LEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR--I-HLRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc--e-ehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 66666666665552 2222334455666666655442111 1 1122444445555555666666666654
Q ss_pred C
Q 010031 190 T 190 (520)
Q Consensus 190 ~ 190 (520)
.
T Consensus 884 ~ 884 (1416)
T KOG3617|consen 884 A 884 (1416)
T ss_pred c
Confidence 3
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.2e-07 Score=80.61 Aligned_cols=386 Identities=13% Similarity=0.072 Sum_probs=238.4
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcc-hHHHHHHHHHhCC-ChhHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 010031 62 SSRITTQLISSASLHKSIDYALSIFDHFTPKNLH-IFNVLIRGLAENS-HFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139 (520)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 139 (520)
+...-...+.+|...++-+.|...+...++.-.. --|.++.-+...| +..++.--+.+.... . | ... ..|.+.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvre-c-p--~aL-~~i~~l 170 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRE-C-P--MAL-QVIEAL 170 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHh-c-c--hHH-HHHHHH
Confidence 4455667788888889999999998888764333 3344444333333 222222222222211 0 0 000 011111
Q ss_pred hccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHh--cCChhHHHHH--hccCCCCCCCCCchhHHHHHHHHHhcCCh
Q 010031 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ--LGKTRGAFKV--FDETPEKNKSESVLLWNVLINGCSKIGYL 215 (520)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 215 (520)
.+.+ +..+...-..|.....+|...+....+.+++. .++...|... +-+.... ++.|+.....+..++...|+.
T Consensus 171 l~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~-lr~NvhLl~~lak~~~~~Gdn 248 (564)
T KOG1174|consen 171 LELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTT-LRCNEHLMMALGKCLYYNGDY 248 (564)
T ss_pred HHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhcc-CCccHHHHHHHhhhhhhhcCc
Confidence 1110 01111111122222333444444444444433 3333333333 3232222 456777788888899999999
Q ss_pred hHHHHHHhhCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010031 216 RKAVELFGMMPKKNVASWVS---LIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLD 289 (520)
Q Consensus 216 ~~a~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 289 (520)
++|...|++..-.|+.+... ..-.+.+.|+.++...+...+...+ ...|..-+......+++..|+.+-++.++
T Consensus 249 ~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~ 328 (564)
T KOG1174|consen 249 FQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID 328 (564)
T ss_pred hHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 99999998877644433222 2333456677777776666655433 23454555556677888888888888877
Q ss_pred cCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHH
Q 010031 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWT 366 (520)
Q Consensus 290 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 366 (520)
.. +-+...+..-...+...++.+.|.-.|+...... +.+...|..|+.+|...|++.+|.-+-+...+ .+..+..
T Consensus 329 ~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~Lt 406 (564)
T KOG1174|consen 329 SE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLT 406 (564)
T ss_pred cC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhh
Confidence 53 3344555555566778899999998888887654 35778899999999999999988766554333 2333333
Q ss_pred HHH-HHHH-HcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHH
Q 010031 367 AMI-WGLA-IHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (520)
Q Consensus 367 ~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (520)
.+. ..+. .-.--++|..++++... +.|+.. ..+.+...|...|....++.++++... ..||...++.|.+.+
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIM 481 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHH
Confidence 332 1121 12234788888888777 678776 777788889999999999999999875 368999999999999
Q ss_pred hccCChHHHHHHHhhCCC
Q 010031 444 SRVGQVDKALNFINKMPE 461 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~ 461 (520)
...+.+++|++.|.....
T Consensus 482 ~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhhhHHHHHHHHHHHHh
Confidence 999999999999988664
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5e-06 Score=82.02 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=76.5
Q ss_pred CCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 010031 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323 (520)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 323 (520)
+.+|.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+ .-|+..|..++..+.+.|.++.-..++...+
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3444444444443332 4577777777777777777765533 2355677777888888888887777777776
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 010031 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385 (520)
Q Consensus 324 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 385 (520)
+...+|.. -+.|+-+|++.++..+-.+++.- ||..-......-|...|.++.|.-+|
T Consensus 1161 kk~~E~~i--d~eLi~AyAkt~rl~elE~fi~g---pN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1161 KKVREPYI--DSELIFAYAKTNRLTELEEFIAG---PNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HhhcCccc--hHHHHHHHHHhchHHHHHHHhcC---CCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 66544443 34677777777777766655432 44433344444444444444444333
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-06 Score=82.90 Aligned_cols=189 Identities=16% Similarity=0.131 Sum_probs=111.9
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 010031 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349 (520)
Q Consensus 270 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 349 (520)
+-.....|.+|+.+++.+++.+. -..-|..+...|+..|+++.|.++|-+. ..++-.|.+|.+.|+++.
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 33445667777777776666532 2234556667777777777777776532 234456677777777777
Q ss_pred HHHHHhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhc
Q 010031 350 ASLVFGETKEKD--LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427 (520)
Q Consensus 350 a~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 427 (520)
|.++-.+...|. +..|-.-..-+-.+|++.+|+++|-... .|+. .|..|-+.|..+..+++.++-..
T Consensus 810 a~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~-- 878 (1636)
T KOG3616|consen 810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG-- 878 (1636)
T ss_pred HHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh--
Confidence 777777666653 3345455555666777777776664432 3432 34556667777776666655321
Q ss_pred CCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010031 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488 (520)
Q Consensus 428 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 488 (520)
..-..+...+..-|-..|+++.|.+-|-+... |.+.++.|...+-++.|.++.
T Consensus 879 --d~l~dt~~~f~~e~e~~g~lkaae~~flea~d------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 879 --DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred --hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh------HHHHHHHhhhhhhHHHHHHHH
Confidence 11123555666677777777777777666543 444555555555555555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.3e-07 Score=84.80 Aligned_cols=220 Identities=15% Similarity=0.140 Sum_probs=158.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCcc--cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHH
Q 010031 237 IDGFMRKGDLKKAGELFEQMPEKGVV--SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314 (520)
Q Consensus 237 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 314 (520)
+.+......+.+|+.+++.+...++. -|..+.+.|...|+++.|.++|.+.- .++-.|..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 44556778888899999888877654 47788889999999999999986532 34556778999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010031 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394 (520)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 394 (520)
|.++-.+. .|.......|.+-..-+-..|++.+|.+++-.+..|+.. |..|-+.|..+..+++.++- .
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~-----h 877 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKH-----H 877 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHh-----C
Confidence 98886654 354556667777777788899999999999888888753 67888999999988887763 3
Q ss_pred CCH--HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHH
Q 010031 395 PDG--TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALF 472 (520)
Q Consensus 395 p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 472 (520)
|+. .|-..+..-+...|++..|...|-+.. -|.+-++.|...+-+++|-++-+.-. -.+..--..++
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~fl 946 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAFL 946 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHHH
Confidence 443 366677777888999999988776654 24556677888888888888765532 12333333444
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 010031 473 CACRTHKDTKIAKIALQS 490 (520)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~ 490 (520)
.+-.--| +.|.+++.+
T Consensus 947 waksigg--daavkllnk 962 (1636)
T KOG3616|consen 947 WAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred HHHhhCc--HHHHHHHHh
Confidence 4433333 456666655
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.6e-09 Score=81.70 Aligned_cols=125 Identities=14% Similarity=0.082 Sum_probs=104.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 382 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
..++++..+ +.|+. +..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|+..|+++..
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 456677766 45654 4456778889999999999999988522 44677889999999999999999999999765
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 462 --TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 462 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
+.++..+..+..++...|++++|+..+++++++.|+++..+...+.+....
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999888876543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.2e-09 Score=92.28 Aligned_cols=232 Identities=10% Similarity=0.023 Sum_probs=155.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 010031 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348 (520)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 348 (520)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556788888886555 222221223345556778888888876543 3333333 566666666655554445666
Q ss_pred HHHHHHhcCCC-C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHc
Q 010031 349 AASLVFGETKE-K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423 (520)
Q Consensus 349 ~a~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 423 (520)
.+..-+++... + +..........+...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666654443 2 2222222234455679999999888653 35667777889999999999999999999
Q ss_pred HhhcCCCCChhHHHHHHHHHh----ccCChHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 010031 424 RFDYFIEPSVKHHTVVVNLLS----RVGQVDKALNFINKMPET--PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 497 (520)
.+ +..|. +...++.++. -.+++.+|..+|+++..+ +++.+.+.+..+....|++++|.+.++++++.+|+
T Consensus 158 ~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 74 23443 3333443332 334799999999998763 67888888999999999999999999999999999
Q ss_pred CcchhHHHHhhhhhccCC
Q 010031 498 IPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 498 ~~~~~~~l~~~~~~~g~~ 515 (520)
+|.++..+..+....|++
T Consensus 234 ~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHHHHHHHHTT-T
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 999999999999998887
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.1e-07 Score=90.20 Aligned_cols=128 Identities=8% Similarity=-0.012 Sum_probs=73.5
Q ss_pred CCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCc-----chHHHHHH
Q 010031 28 NITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL-----HIFNVLIR 102 (520)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~li~ 102 (520)
.+.+..+...++..-|.-.|.+-|....+.. ..+......+.+.|++..+++.|..+.-...+... ..|....-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 3466677777777778888888888777664 44677788889999999999998877432221110 11222222
Q ss_pred HHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHH
Q 010031 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157 (520)
Q Consensus 103 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 157 (520)
.|...++...|+.-|+...+..+ -|...|..+..+|...|++..|.++|.+...
T Consensus 571 yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 33444455555555554444211 1333445555555555555555555544444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-06 Score=81.26 Aligned_cols=192 Identities=10% Similarity=0.007 Sum_probs=93.3
Q ss_pred HHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C---Ch--hHHHHHHHHHHHc
Q 010031 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K---DL--LTWTAMIWGLAIH 375 (520)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~--~~~~~l~~~~~~~ 375 (520)
...+...|+++.|...+++..+.. +.+...+..+..++...|++++|...+++... + +. ..|..+...+...
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 334445555555555555555443 22334445555555555666666655555443 1 11 1344556666777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH-HH-H--HHHHHHHccCcHHHHHHH--HHHcHhhc-CCCCChhHHHHHHHHHhccCC
Q 010031 376 GRYEQAIQYFKKMMYSGTEPDGT-VF-L--AILTACWYSGQVKLALNF--FDSMRFDY-FIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 376 ~~~~~a~~~~~~~~~~~~~p~~~-~~-~--~l~~~~~~~g~~~~a~~~--~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 448 (520)
|++++|..++++.......+... .. . .++.-+...|..+.+.+. +....... ..............++...|+
T Consensus 200 G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 200 GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence 77777777777765422111111 11 1 222223333432222222 11111000 000111111245666777888
Q ss_pred hHHHHHHHhhCCC--CC---CHH----HH--HHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 010031 449 VDKALNFINKMPE--TP---DFV----IW--GALFCACRTHKDTKIAKIALQSSCSLN 495 (520)
Q Consensus 449 ~~~A~~~~~~~~~--~~---~~~----~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 495 (520)
.++|...++.+.. .. ... +- .....++...|+.++|.+.+..++.+-
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888877643 11 111 11 222233668889999998888887643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.5e-06 Score=78.79 Aligned_cols=259 Identities=12% Similarity=0.067 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCC-CcchHHHHHHHHHhC
Q 010031 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK-NLHIFNVLIRGLAEN 107 (520)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~ 107 (520)
.+...++.+....|-+++|..+|++..+.. .+=..|...|.+++|.++-+.-.+- =..+|......+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 344444445555566677777776665542 2334566677777777777654331 123566666666667
Q ss_pred CChhHHHHHHHHhhhC----------CC---------CCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHH
Q 010031 108 SHFQSCISHFVFMLRL----------SV---------RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168 (520)
Q Consensus 108 ~~~~~A~~~~~~m~~~----------~~---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 168 (520)
++.+.|++.|++.-.. .. ..|...|.--...+-..|+.+.|..++..... |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 7777777777664211 00 01111222222222334455555554443322 34
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHH-------
Q 010031 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM------- 241 (520)
Q Consensus 169 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~------- 241 (520)
.+++..|-.|+.++|-++-++-. |......|.+.|-..|++.+|...|.+... +...|+.|-
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-----fsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA-----FSNAIRLCKENDMKDR 1011 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHhcCHHHH
Confidence 45555666677777777666533 455666677778888888888887766542 222222221
Q ss_pred --------hcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHH--------HHHcCC--CCCHHHHHHHH
Q 010031 242 --------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ--------MLDAGV--RANDFTVVSAL 303 (520)
Q Consensus 242 --------~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------m~~~~~--~p~~~~~~~l~ 303 (520)
...+.-.|-+.|++.. .-+...+..|.+.|.+.+|+++--+ ++...+ ..|+...+...
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe~g----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEELG----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHHcc----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 1122233333444332 1122334456777777777665211 122222 33555555555
Q ss_pred HHhhccCChHHHHHHHH
Q 010031 304 SACAKVGALEAGVRVHN 320 (520)
Q Consensus 304 ~~~~~~~~~~~a~~~~~ 320 (520)
..++...++++|..++-
T Consensus 1088 dFF~~~~qyekAV~lL~ 1104 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLC 1104 (1416)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 55666666666655543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.7e-07 Score=76.29 Aligned_cols=85 Identities=14% Similarity=0.052 Sum_probs=37.0
Q ss_pred HHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 010031 271 FSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349 (520)
Q Consensus 271 ~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 349 (520)
+.+.|+++.|.+-+-.|-... -..|++|...+.-. ...+++....+-+.-+...++ ....+|..++-.||+..-++.
T Consensus 251 eyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 251 EYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred hhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhH
Confidence 344555555555444443211 12244444333211 112233333333333333332 344555555556666666666
Q ss_pred HHHHHhcC
Q 010031 350 ASLVFGET 357 (520)
Q Consensus 350 a~~~~~~~ 357 (520)
|-.++.+-
T Consensus 329 AADvLAEn 336 (459)
T KOG4340|consen 329 AADVLAEN 336 (459)
T ss_pred HHHHHhhC
Confidence 66555543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.9e-06 Score=89.61 Aligned_cols=322 Identities=11% Similarity=-0.002 Sum_probs=183.0
Q ss_pred HHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCC------CC--hhHHHHHHHHHH
Q 010031 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE------YD--AFVRVHLADMYV 175 (520)
Q Consensus 104 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~~ 175 (520)
....|++..+...++.+.......+..........+...|+++++...+......--. +. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4445666666666665532111122222233344455677888888887776543110 11 112222334556
Q ss_pred hcCChhHHHHHhccCCCCCCCCC----chhHHHHHHHHHhcCChhHHHHHHhhCCC-------CC--HHHHHHHHHHHHh
Q 010031 176 QLGKTRGAFKVFDETPEKNKSES----VLLWNVLINGCSKIGYLRKAVELFGMMPK-------KN--VASWVSLIDGFMR 242 (520)
Q Consensus 176 ~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~--~~~~~~l~~~~~~ 242 (520)
..|+++.|...+++....-...+ ....+.+...+...|++++|...+++... +. ..+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 78888888888776554211111 12334455566778888888888777653 11 1234455666777
Q ss_pred cCCHHHHHHHHhcCCC-------CC----cccHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCC--CHHHHHHHHHHhh
Q 010031 243 KGDLKKAGELFEQMPE-------KG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAG--VRA--NDFTVVSALSACA 307 (520)
Q Consensus 243 ~~~~~~a~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p--~~~~~~~l~~~~~ 307 (520)
.|++++|...+++... ++ ...+..+...+...|++++|...+.+..... ..+ ....+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 8888888887766432 11 1123344556667788888888887765431 112 1233334455666
Q ss_pred ccCChHHHHHHHHHHHHcCCCCC-hhHH-----HHHHHHHHhcCCHHHHHHHHhcCCCCCh-------hHHHHHHHHHHH
Q 010031 308 KVGALEAGVRVHNYISCNDFGLK-GAIG-----TALVDMYAKCGNIEAASLVFGETKEKDL-------LTWTAMIWGLAI 374 (520)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~ 374 (520)
..|+.+.|...+........... ...+ ...+..+...|+.+.|...+.....+.. ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 77888888888777644211111 0101 1122344557888888888766554211 113455666777
Q ss_pred cCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 375 HGRYEQAIQYFKKMMYS----GTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 375 ~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
.|++++|...+++.... |..++. .+...+..++...|+.++|...+.+..+
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888876552 222222 2555566677788888888888888764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.6e-05 Score=82.32 Aligned_cols=325 Identities=13% Similarity=0.023 Sum_probs=191.5
Q ss_pred HHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC----C----C--H--HHHHHHHHHH
Q 010031 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----K----N--V--ASWVSLIDGF 240 (520)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~----~--~--~~~~~l~~~~ 240 (520)
.....|+++.+...++.+.......+..........+...|+++++...+..... . + . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777776653221122233334445555677888888877765532 1 1 1 1122233445
Q ss_pred HhcCCHHHHHHHHhcCCC----CC----cccHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CCC--HHHHHHHHHHhh
Q 010031 241 MRKGDLKKAGELFEQMPE----KG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGV---RAN--DFTVVSALSACA 307 (520)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~~~~~ 307 (520)
...|++++|...+++... .+ ....+.+...+...|++++|...+.+.....- .+. ..+...+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 678888888888776432 11 12345566667788888888888888764311 111 233444556677
Q ss_pred ccCChHHHHHHHHHHHHc----CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC------C--ChhHHHHHHHHH
Q 010031 308 KVGALEAGVRVHNYISCN----DFGL---KGAIGTALVDMYAKCGNIEAASLVFGETKE------K--DLLTWTAMIWGL 372 (520)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~--~~~~~~~l~~~~ 372 (520)
..|+++.|...+++.... +... ....+..+...+...|++++|...+++... + ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 788888888888776442 2111 122334455666777888888887776543 1 123344456667
Q ss_pred HHcCCHHHHHHHHHHHHHCCCC-CCHHHHHH-----HHHHHHccCcHHHHHHHHHHcHhhcCCCCChh----HHHHHHHH
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTE-PDGTVFLA-----ILTACWYSGQVKLALNFFDSMRFDYFIEPSVK----HHTVVVNL 442 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~ 442 (520)
...|++++|...+++....... .....+.. .+..+...|+.+.|...+..... .. ..... .+..+..+
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~-~~-~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK-PE-FANNHFLQGQWRNIARA 700 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC-CC-CccchhHHHHHHHHHHH
Confidence 7888888888888877542111 11111111 11334457888888888777642 11 11111 13456677
Q ss_pred HhccCChHHHHHHHhhCCC-------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q 010031 443 LSRVGQVDKALNFINKMPE-------TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~-------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 499 (520)
+...|++++|...+++... ..+ ..+...+..++.+.|+.++|...+.+++++.....
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 7888888888888887653 111 22455555668888888899999999888875543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.89 E-value=6e-06 Score=77.77 Aligned_cols=148 Identities=14% Similarity=0.078 Sum_probs=72.6
Q ss_pred hccCChhhHHHHHHHHHHhCCCCChhHHHH---HHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChh
Q 010031 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVH---LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216 (520)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 216 (520)
...|++++|.+.++...+.. +.+...+.. +.......+..+.+.+.++..... .+........+...+...|+++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~ 131 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYD 131 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHH
Confidence 44556666666666655542 122222221 111111233344444444431111 1112223333444556666666
Q ss_pred HHHHHHhhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----Cc--ccHHHHHHHHHhCCChhHHHHHHHH
Q 010031 217 KAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-----GV--VSWTAMINGFSQNGEAEKALAMFFQ 286 (520)
Q Consensus 217 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~l~~~~~~~~~~~~a~~~~~~ 286 (520)
+|...+++..+ .+...+..+...+...|++++|...+++.... +. ..|..+...+...|++++|..++++
T Consensus 132 ~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 132 RAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666554 23344555556666666666666666654431 11 1234566667777777777777777
Q ss_pred HHH
Q 010031 287 MLD 289 (520)
Q Consensus 287 m~~ 289 (520)
...
T Consensus 212 ~~~ 214 (355)
T cd05804 212 HIA 214 (355)
T ss_pred Hhc
Confidence 643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.7e-06 Score=76.27 Aligned_cols=101 Identities=10% Similarity=0.006 Sum_probs=79.9
Q ss_pred HHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhH
Q 010031 36 SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQS 112 (520)
Q Consensus 36 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 112 (520)
....++|+++.|...|...+.... ++...|..-..+|++.|++++|++=-..-.+ .-...|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 456678999999999999988874 4888888889999999999999876654443 344689999999999999999
Q ss_pred HHHHHHHhhhCCCCCCc-ccHHHHHHHH
Q 010031 113 CISHFVFMLRLSVRPNR-LTYPFVSKSV 139 (520)
Q Consensus 113 A~~~~~~m~~~~~~p~~-~~~~~ll~~~ 139 (520)
|+.-|.+-++. .|+. ..+.-+..+.
T Consensus 89 A~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 99999998773 3543 4555555555
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-07 Score=86.33 Aligned_cols=241 Identities=12% Similarity=0.029 Sum_probs=147.3
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 010031 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350 (520)
Q Consensus 271 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 350 (520)
+.+.|+..+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+.. +.+......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 344455555555555544432 2233444444444444444455555555544443 12334444444455555555555
Q ss_pred HHHHhcCCCCCh-hHHHHHH---------HHHHHcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 010031 351 SLVFGETKEKDL-LTWTAMI---------WGLAIHGRYEQAIQYFKK-MMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419 (520)
Q Consensus 351 ~~~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~a~~~~~~-~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 419 (520)
...++.-..... ..|.... ..+..........++|-+ ....+..+|+.....|.-.|--.|++++|...
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 554443321000 0000000 011111123334444444 44455456777777777778889999999999
Q ss_pred HHHcHhhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 010031 420 FDSMRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 420 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 496 (520)
|+.+.. ++| |..+||.|...++...+.++|+..|.++.. +|. ..++..|.-+|...|.+++|...|=.++.+.+
T Consensus 453 f~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 453 FEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 999885 345 567999999999999999999999999876 677 45788899999999999999999999987654
Q ss_pred C-----Cc-----chhHHHHhhhhhccCCC
Q 010031 497 S-----IP-----QAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 497 ~-----~~-----~~~~~l~~~~~~~g~~~ 516 (520)
. .. .+|..|-.++...+..+
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 3 22 47888888877777665
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00015 Score=72.13 Aligned_cols=374 Identities=15% Similarity=0.099 Sum_probs=246.8
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCC--CCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHH
Q 010031 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR--PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169 (520)
Q Consensus 92 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 169 (520)
.|+..-+..++++...+-+.+-+++++++.-.+.. -+...-+.|+-.. -.-+...+.+..+++-..+. | .
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdnyDa-~------~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDNYDA-P------D 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhccCCc-h------h
Confidence 34555666677777777777788887777642211 1111222222222 22344455555555433221 1 2
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010031 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249 (520)
Q Consensus 170 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 249 (520)
+.......+-+++|..+|+... .+..+.+.|+. .-+.++.|.++-++..+| ..|..+..+-.+.|.+.+|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHH
Confidence 3444556667788888887643 23444455553 456778888877777654 5688999999999999999
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCC
Q 010031 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329 (520)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (520)
++-|-+.. |+..|..+++...+.|.|++-.+++....+..-.|... ..++-+|++.+++.+.++++. .|
T Consensus 1124 ieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gp 1192 (1666)
T KOG0985|consen 1124 IESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GP 1192 (1666)
T ss_pred HHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CC
Confidence 99886654 55678999999999999999999998887776566544 468889999998887766652 47
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010031 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 409 (520)
+..-...+.+-|...|.++.|.-+|.. +.-|..|...+...|+++.|...-++. -+..||..+-.+|..
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~-----vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSN-----VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVD 1261 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhc
Confidence 777778888999999999999888754 456888888899999999887765543 245689888889988
Q ss_pred cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010031 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIA 487 (520)
Q Consensus 410 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 487 (520)
.+.+.-|. |. ...+-.-..-...++..|-..|-+++.+.+++.... +.....|..|.-.|.+- ++++-.+.
T Consensus 1262 ~~EFrlAQ-----iC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EH 1334 (1666)
T KOG0985|consen 1262 KEEFRLAQ-----IC-GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEH 1334 (1666)
T ss_pred hhhhhHHH-----hc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHH
Confidence 87765543 21 112222334456788889999999999999887653 33444555555445433 45555555
Q ss_pred HHHHhcC-C-C------CCcchhHHHHhhhhhc
Q 010031 488 LQSSCSL-N-L------SIPQAMSYCQTFMQQK 512 (520)
Q Consensus 488 ~~~~~~~-~-p------~~~~~~~~l~~~~~~~ 512 (520)
++-.|.. + | +....|..+..+|.+-
T Consensus 1335 l~LFwsRvNipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1335 LKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555431 1 2 3344455555555543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.9e-08 Score=88.54 Aligned_cols=206 Identities=15% Similarity=0.103 Sum_probs=164.1
Q ss_pred hhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHH
Q 010031 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAI 382 (520)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 382 (520)
+.+.|++..|.-.|+..++.+ +-+...|..|.......++-..|+..+++..+ .|....-.|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 467888999999999988776 35788899999888899998899999988776 36678888888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHH--------HHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHH
Q 010031 383 QYFKKMMYSGTEPDGTVFLA--------ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454 (520)
Q Consensus 383 ~~~~~~~~~~~~p~~~~~~~--------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (520)
..++.-+... |....... .-..+.....+....++|-++....+..+|+.++..|.-.|.-.|++++|+.
T Consensus 374 ~~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 9999886632 21110000 0012233344566667777766566666888899999999999999999999
Q ss_pred HHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 455 FINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 455 ~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.|+.+.. +| |..+|+-|...+....+.++|+..|.+++++.|.-..+...+|..+...|.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA 513 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh
Confidence 9998765 55 566899999999999999999999999999999999999999998887775
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-05 Score=68.91 Aligned_cols=306 Identities=10% Similarity=0.015 Sum_probs=186.5
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHH---HHHHhCCChhHHHHHHHHhhhCCCCCCcccHHH-HHH
Q 010031 62 SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI---RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF-VSK 137 (520)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~ 137 (520)
++.-.--+-..+...|++.+|+.-|....+.|+..|.++. ..|...|+...|+.=|.+..+ ++||-..-.. -..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhch
Confidence 3444445566677789999999999888887777776665 477888998899988888887 6677543221 123
Q ss_pred HHhccCChhhHHHHHHHHHHhCCCCCh--hH------------HHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHH
Q 010031 138 SVASLSLLSLGRGLHCLIVKSGVEYDA--FV------------RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203 (520)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 203 (520)
.+.++|.+++|..-|+.++........ .. ....+..+...|+...|+.....+++.. +-+...+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 567899999999999999876421111 11 1223445567788888999888888764 56777888
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHH
Q 010031 204 VLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280 (520)
Q Consensus 204 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 280 (520)
.-..+|...|++..|+.-++...+ .+..++..+-..+...|+.+.++...++..+-|...-. +|.--....+.
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~----Cf~~YKklkKv 269 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL----CFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh----HHHHHHHHHHH
Confidence 888889999999988877666554 56677777777778888888888877776654421100 00000001111
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010031 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG---AIGTALVDMYAKCGNIEAASLVFGET 357 (520)
Q Consensus 281 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~ 357 (520)
.+.++.|.+ ....+++..+..-.+...+....... ..+..+-.++...+++.+|++...++
T Consensus 270 ~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 270 VKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred HHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 111111111 12333444444444444443322111 22233444555556666666555554
Q ss_pred CC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 358 KE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 358 ~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
.. | |+.++.--..+|.-...++.|+.-|+...+
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 44 2 344555555566666666666666666665
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.1e-07 Score=74.47 Aligned_cols=156 Identities=13% Similarity=0.074 Sum_probs=114.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHH
Q 010031 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLA 416 (520)
Q Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 416 (520)
+-.|...|+++.+....+.+..+. ..+...++.+++...++...+. .| |...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 345677777776654443322221 0112256678888888887774 44 555888999999999999999
Q ss_pred HHHHHHcHhhcCCCCChhHHHHHHHHH-hccCC--hHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010031 417 LNFFDSMRFDYFIEPSVKHHTVVVNLL-SRVGQ--VDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSS 491 (520)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 491 (520)
...+++..+.. +.+...+..+..++ .+.|+ .++|.+++++... .| +...+..+...+.+.|++++|+..|+++
T Consensus 93 ~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988532 34567788888864 67777 5999999999776 34 5678888888899999999999999999
Q ss_pred hcCCCCCcchhHHH
Q 010031 492 CSLNLSIPQAMSYC 505 (520)
Q Consensus 492 ~~~~p~~~~~~~~l 505 (520)
+++.|.+.+....+
T Consensus 171 L~l~~~~~~r~~~i 184 (198)
T PRK10370 171 LDLNSPRVNRTQLV 184 (198)
T ss_pred HhhCCCCccHHHHH
Confidence 99988777665544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.8e-06 Score=81.62 Aligned_cols=386 Identities=14% Similarity=0.047 Sum_probs=188.0
Q ss_pred hhHHHHHHHHhhhCCCCCCc-ccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhc
Q 010031 110 FQSCISHFVFMLRLSVRPNR-LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188 (520)
Q Consensus 110 ~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 188 (520)
...|+..|-+..+. .|+. ..|..|...|....+...|.+.|+...+.+. .+........+.|++..+++.|..+.-
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 44555555444442 2222 2456666666666666677777776666431 344556666677777777777766633
Q ss_pred cCCCCC-CCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccc-
Q 010031 189 ETPEKN-KSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS- 263 (520)
Q Consensus 189 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 263 (520)
..-+.. ...-...|....-.|.+.++...|+.-|+...+ .|...|..+..+|..+|++..|.++|.+...-++..
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 322221 000111222233335556666677766666665 344566667777777777777777776654433221
Q ss_pred HH--HHHHHHHhCCChhHHHHHHHHHHHc------CCCCCHHHHHHHHHHhhccCChHHHHHHHHHH-------HHcCCC
Q 010031 264 WT--AMINGFSQNGEAEKALAMFFQMLDA------GVRANDFTVVSALSACAKVGALEAGVRVHNYI-------SCNDFG 328 (520)
Q Consensus 264 ~~--~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~ 328 (520)
|. -..-..+..|.+.+|...+...... +..--..++..+...+.-.|-..++..+++.- ......
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 11 1222345566777776666655432 11111122222222222222222222222221 111111
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHHcCCH---H---HHHHHHHHHHHCCCCCCHHH
Q 010031 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKD---LLTWTAMIWGLAIHGRY---E---QAIQYFKKMMYSGTEPDGTV 399 (520)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~~p~~~~ 399 (520)
.+...|..+. .|..+|-... |+ ......+..-+...+.. + -+.+.+-.-.+ ...+..+
T Consensus 711 ~~~~~Wi~as----------dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~ 777 (1238)
T KOG1127|consen 711 SDRLQWIVAS----------DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYP 777 (1238)
T ss_pred hhHHHHHHHh----------HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhccch
Confidence 1112221111 1122222222 22 11111111111111211 1 11111111111 1112334
Q ss_pred HHHHHHHHHc-------cC-cHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHH
Q 010031 400 FLAILTACWY-------SG-QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWG 469 (520)
Q Consensus 400 ~~~l~~~~~~-------~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 469 (520)
|..+...|.+ .+ +...|+..+.+..+. ...+..+|+.|.-+ ...|++.-|.-.|-+... +....+|.
T Consensus 778 WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~ 854 (1238)
T KOG1127|consen 778 WYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWL 854 (1238)
T ss_pred HHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhhee
Confidence 4444333322 11 234677777766542 13344556555544 555677777666654332 34566788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 470 ALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.+...+.+..|++-|...+.++..++|.|...|.-.+.+..+.|+
T Consensus 855 NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ 899 (1238)
T KOG1127|consen 855 NLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGR 899 (1238)
T ss_pred ccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHH
Confidence 888888888888888888888888888888888877777777775
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-06 Score=86.78 Aligned_cols=221 Identities=13% Similarity=0.092 Sum_probs=154.7
Q ss_pred CCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-C-cccHH
Q 010031 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPK--------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-G-VVSWT 265 (520)
Q Consensus 196 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~ 265 (520)
|.+...|-..|......++.++|.++.+++.. .-...|.++++....-|.-+...++|+++.+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 44556677777777777777777777777665 12246677777666677777777888777653 2 34677
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhc
Q 010031 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG-LKGAIGTALVDMYAKC 344 (520)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 344 (520)
.|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++++.-.+ -......-.++.-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7888888888888888888888775 3345567777788888888888888888887765322 2344455666777788
Q ss_pred CCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCcHHHHH
Q 010031 345 GNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACWYSGQVKLAL 417 (520)
Q Consensus 345 ~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~ 417 (520)
|+.+.++.+|+..... -...|+..+..-.++|+.+.+..+|++++..++.|-.. .|...+..--..|+-..+.
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 8888888888877652 45678888888888888888888888888877777544 5555555444455544333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-06 Score=83.30 Aligned_cols=210 Identities=17% Similarity=0.146 Sum_probs=170.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChH
Q 010031 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313 (520)
Q Consensus 234 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 313 (520)
..+...+...|-...|..+|+++ ..|..++.+|+..|+..+|..+..+-.+ -+|++..|..+.+......-++
T Consensus 402 ~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHH
Confidence 56777888999999999999987 4788899999999999999999988877 3788888888888777777788
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
+|.++.+..... .-..+.....+.++++++.+.|+.-.+- -..+|..+..+..+.++++.|.+.|..-..
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 888887765322 1122233334478999999999876653 446888888888999999999999999888
Q ss_pred CCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 391 SGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 391 ~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
..||.. .|+++-.+|.+.|+-.+|...+++..+ .. .-+..+|...+....+.|.+++|++.+.++..
T Consensus 548 --L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 548 --LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred --cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 688776 999999999999999999999999984 44 44556777888888999999999999988654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.6e-07 Score=77.61 Aligned_cols=60 Identities=17% Similarity=0.019 Sum_probs=43.1
Q ss_pred HHHHHHhccCChHHHHHHHhhCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 010031 438 VVVNLLSRVGQVDKALNFINKMPE-TP----DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 497 (520)
.+...|.+.|++++|+..+++... .| ....+..+..++...|++++|..+++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455667788888888888877654 12 2457777778888888888888888777666553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.9e-06 Score=75.32 Aligned_cols=129 Identities=10% Similarity=0.063 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc---CCh----H
Q 010031 379 EQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV---GQV----D 450 (520)
Q Consensus 379 ~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~ 450 (520)
++++.+++++.+. .| |..+|.....++...|+++++++.++++.+.. +.+...|+....++.+. |+. +
T Consensus 125 ~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 125 NKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred HHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHH
Confidence 4455555555552 33 33355555555555566666666666665321 23334444444443332 222 3
Q ss_pred HHHHHHhhCCC-CC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 451 KALNFINKMPE-TP-DFVIWGALFCACRTH----KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 451 ~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
++++...++.. .| |...|+.+...+... +...+|...+.+++..+|+++.++..|+.+|.+
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 44444433332 22 344566665555552 334456666666666666666666666666654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-06 Score=76.44 Aligned_cols=167 Identities=10% Similarity=-0.008 Sum_probs=98.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-h---hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----H
Q 010031 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE--KD-L---LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT----V 399 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~ 399 (520)
....+..++..+...|++++|...|+++.. |+ . ..+..+..++...|++++|...++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344555566666667777777777665544 21 1 24555666666677777777777776653 33221 3
Q ss_pred HHHHHHHHHcc--------CcHHHHHHHHHHcHhhcCCCCCh-hHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHH
Q 010031 400 FLAILTACWYS--------GQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGA 470 (520)
Q Consensus 400 ~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 470 (520)
+..+..++... |++++|.+.++.+... .|+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33333444433 5566666666666542 2332 122111111 0000000 001124
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCCc---chhHHHHhhhhhccCCC
Q 010031 471 LFCACRTHKDTKIAKIALQSSCSLNLSIP---QAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 471 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~ 516 (520)
+...+.+.|++++|+..++++++..|++| .++..++.++.+.|+.+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~ 220 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKD 220 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHH
Confidence 55668899999999999999999987765 78999999999999865
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.5e-05 Score=69.18 Aligned_cols=237 Identities=9% Similarity=0.041 Sum_probs=154.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccC-ChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 010031 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRAND-FTVVSALSACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (520)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (520)
+..+-..+...++.++|+.++.++++. .|+. ..+..--.++...| +++++...++.+.+.+. .+..+|+...-++
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHH
Confidence 334444566677888888888888875 4443 34444444455556 57888888888887653 3445566554455
Q ss_pred HhcCCH--HHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---Cc-
Q 010031 342 AKCGNI--EAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS---GQ- 412 (520)
Q Consensus 342 ~~~~~~--~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~- 412 (520)
.+.|+. +++..+++.+.+ .|..+|+...-++...|+++++++.++++++.+.. |...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 555553 567777776665 46778888888888889999999999999986543 444666655555443 22
Q ss_pred ---HHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc----CChHHHHHHHhhCCC-C-CCHHHHHHHHHHHHHcC----
Q 010031 413 ---VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV----GQVDKALNFINKMPE-T-PDFVIWGALFCACRTHK---- 479 (520)
Q Consensus 413 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~g---- 479 (520)
.++.+++..++.... +-+...|+.+..++... ++..+|.+++.+... . .+......|+..|....
T Consensus 196 ~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~ 273 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTA 273 (320)
T ss_pred cccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccch
Confidence 346777776666422 44567888888777763 445678888877654 3 45667777777776532
Q ss_pred --------------CHHHHHHHHHHHhcCCCCCcchhHHHH
Q 010031 480 --------------DTKIAKIALQSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 480 --------------~~~~A~~~~~~~~~~~p~~~~~~~~l~ 506 (520)
..++|..+++.+-+.+|=-...|.+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~~~ 314 (320)
T PLN02789 274 EFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAWRK 314 (320)
T ss_pred hhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 346788888888666665555555433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.62 E-value=9e-07 Score=70.14 Aligned_cols=118 Identities=10% Similarity=0.013 Sum_probs=93.8
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-
Q 010031 384 YFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE- 461 (520)
Q Consensus 384 ~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 461 (520)
.++++.. ..|+.. ....+...+...|++++|.+.++.+.... +.+...+..+..++.+.|++++|...+++...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556655 455443 56667778888999999999999987532 44667888899999999999999999988654
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 462 -TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 462 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
+.+...+..+...+...|++++|...+++++++.|+++......
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 125 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELK 125 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 44577888888899999999999999999999999988755443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.4e-08 Score=54.90 Aligned_cols=31 Identities=35% Similarity=0.526 Sum_probs=13.7
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHhccC
Q 010031 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190 (520)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 190 (520)
+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.3e-08 Score=54.13 Aligned_cols=32 Identities=31% Similarity=0.602 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHc
Q 010031 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423 (520)
Q Consensus 392 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 423 (520)
|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44444445555555555555555555444444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.5e-06 Score=84.56 Aligned_cols=199 Identities=11% Similarity=0.105 Sum_probs=127.6
Q ss_pred CHHHHHHHHHHhhccCChHHHHHHHHHHHHc-CCC---CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--ChhHHHHH
Q 010031 295 NDFTVVSALSACAKVGALEAGVRVHNYISCN-DFG---LKGAIGTALVDMYAKCGNIEAASLVFGETKEK--DLLTWTAM 368 (520)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l 368 (520)
+...|...|......++.++|+++.++++.. ++. --..+|.++++....-|.-+...++|+++.+- ....|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3455666666666777777777777776542 111 12235566666666666666677777776662 23466777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.++.+...-.--.......+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 77777777777777777777764 33445577777777777777777777777776422111123344455566667777
Q ss_pred hHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 449 VDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 449 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
.+.+..+|+.... +.-...|+.++..-.++|+.+.+..+|++++++
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 7777777776554 234567777777777777777777777777764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.7e-06 Score=81.42 Aligned_cols=138 Identities=11% Similarity=0.065 Sum_probs=111.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 439 (520)
+...+..|.......|.+++|+.+++...+ +.|+.. ....+...+.+.+++++|...+++.... -+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 467788888888899999999999999988 688877 7777888888999999999999988752 13345677788
Q ss_pred HHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchh
Q 010031 440 VNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 502 (520)
..++.+.|++++|.++|+++.. .|+ ...+..+..++...|+.++|...|+++++...+-...+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 8889999999999999998774 344 66888888889999999999999999988765554443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-05 Score=80.60 Aligned_cols=234 Identities=15% Similarity=0.069 Sum_probs=116.9
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhCCC--CCH-HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Q 010031 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNV-ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274 (520)
Q Consensus 198 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (520)
+...+..|+..+...+++++|..+.+...+ |+. ..|-.+...+...++.+++.-+ .++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 455566666666666677776666665544 332 2222333344444444433322 233333444
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 010031 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354 (520)
Q Consensus 275 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 354 (520)
.++.-+..+...|.+. .-+...+..+..+|.+.|+.+++..+++++++.. +.++.+.|.+...|... ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 4444444444444442 2333455566666666666666666666666655 34555666666666655 666666554
Q ss_pred hcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChh
Q 010031 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434 (520)
Q Consensus 355 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 434 (520)
.+. +..+...+++..+.+++.++... .|+.. +.-..+.+.+....+..--+.
T Consensus 173 ~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~---------------d~f~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 173 KKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDF---------------DFFLRIERKVLGHREFTRLVG 224 (906)
T ss_pred HHH-----------HHHHHhhhcchHHHHHHHHHHhc--Ccccc---------------hHHHHHHHHHHhhhccchhHH
Confidence 432 22344455666666666666552 33322 111222222222222222333
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHH
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACR 476 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 476 (520)
++-.+...|-..+++++++.+++.+.. +.|.....-++.+|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 444555556666666666666666554 233444445555543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.9e-05 Score=63.47 Aligned_cols=155 Identities=14% Similarity=0.124 Sum_probs=81.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCcH
Q 010031 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY----SGQV 413 (520)
Q Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 413 (520)
...|+..|++++|.+...... +......=+..+.+..+.+-|...+++|.+ +. +..|.+.|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHHhccchhh
Confidence 344555666666666655522 222222223444555566666666666654 11 33455555554433 3346
Q ss_pred HHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 010031 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHK-DTKIAKIALQS 490 (520)
Q Consensus 414 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~ 490 (520)
.+|.-+|++|.++ .+|++.+.+-...+....|++++|..+++.... ..++.+...++-+-...| +.+--.+.+.+
T Consensus 190 qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 6666666666532 356666666666666666666666666666544 234555555554444444 33444555555
Q ss_pred HhcCCCCCc
Q 010031 491 SCSLNLSIP 499 (520)
Q Consensus 491 ~~~~~p~~~ 499 (520)
+....|+.+
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 555555544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.5e-06 Score=79.74 Aligned_cols=215 Identities=17% Similarity=0.142 Sum_probs=112.3
Q ss_pred CCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 010031 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139 (520)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 139 (520)
+|-...-..+...+.+.|-...|+.+|+++ ..|.-+|..|...|+..+|..+..+-.+ -+||+..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 333444445555555666666666666553 2355555566666666666655555544 235555565555555
Q ss_pred hccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHH
Q 010031 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219 (520)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 219 (520)
....-++.|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+.-+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 5555555555555443221 11112222223456666666665544443 334555555555555666666666
Q ss_pred HHHhhCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010031 220 ELFGMMPK--K-NVASWVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLD 289 (520)
Q Consensus 220 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 289 (520)
+.|..... | +...||.+-.+|.+.++-.+|...+.+..+-+ ...|...+....+.|.+++|++.+.++.+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 66555554 3 23455666666666666666666655554432 23344445555555666666655555543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.3e-05 Score=70.01 Aligned_cols=203 Identities=13% Similarity=0.090 Sum_probs=145.9
Q ss_pred CChHHHHHHhcccCC------CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHH
Q 010031 77 KSIDYALSIFDHFTP------KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150 (520)
Q Consensus 77 ~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 150 (520)
.++.++....+.++. ++...+...+.+......-..+-.++.+-.+ ..-...-|...+. ....|+++.|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~~-~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRALQ-TYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHHH-HHHhcccchHHH
Confidence 456666666666664 3445566666665555444444443333322 1112223444443 346789999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC---
Q 010031 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--- 227 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--- 227 (520)
.++.+++.. +.|+.........+.+.++.++|.+.++.+.... +.....+..+..++.+.|+..+|+.+++....
T Consensus 328 ~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 328 LLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 999988854 4567777888899999999999999999998873 33366677788999999999999999988876
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 010031 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299 (520)
Q Consensus 228 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 299 (520)
.|+..|..|..+|...|+..++.... ...|...|++++|...+....+.. .++..++
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~G~~~~A~~~l~~A~~~~-~~~~~~~ 462 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALAGRLEQAIIFLMRASQQV-KLGFPDW 462 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhCCCHHHHHHHHHHHHHhc-cCCcHHH
Confidence 57789999999999999999887653 456888999999999998888763 4444433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.3e-05 Score=63.73 Aligned_cols=169 Identities=10% Similarity=0.077 Sum_probs=106.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CC
Q 010031 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-KD 361 (520)
Q Consensus 283 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~ 361 (520)
+.+.+.......+......-...|++.|+++.|.+..... -+......-+..+.+..+++-|.+.++.|.+ .+
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 3444444433334333333444567777777777776541 1333333444556677777788887777777 34
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHH
Q 010031 362 LLTWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437 (520)
Q Consensus 362 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 437 (520)
..+.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++....+. ..++.+..
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~ 245 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLA 245 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHH
Confidence 4566666666654 34578888888888765 67888888888888888888888888888887533 34455666
Q ss_pred HHHHHHhccCChHHH-HHHHhhCC
Q 010031 438 VVVNLLSRVGQVDKA-LNFINKMP 460 (520)
Q Consensus 438 ~l~~~~~~~g~~~~A-~~~~~~~~ 460 (520)
.++-+-...|...++ .+.+...+
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHH
Confidence 666655566665444 34445444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00077 Score=62.73 Aligned_cols=398 Identities=12% Similarity=0.069 Sum_probs=229.1
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCc-ccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHH
Q 010031 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR-LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHL 170 (520)
Q Consensus 92 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 170 (520)
-|..+|+.||+-+... .++++.+.++++.. +.|+. ..|..-|..-....+++.++.+|.+....- .+...|...
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 4778999999966555 89999999999986 55544 467777888888999999999999887754 356666655
Q ss_pred HHHHH-hcCChhH----HHHHhccCC-CCCCCC-CchhHHHHHHHH---------HhcCChhHHHHHHhhCCC-C--CH-
Q 010031 171 ADMYV-QLGKTRG----AFKVFDETP-EKNKSE-SVLLWNVLINGC---------SKIGYLRKAVELFGMMPK-K--NV- 230 (520)
Q Consensus 171 ~~~~~-~~g~~~~----a~~~~~~~~-~~~~~~-~~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~-~--~~- 230 (520)
++--. ..|+... ..+.|+-.. +.|+.+ +...|+..+..+ ..+.+++...++|+++.. | +.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 54322 2344433 233344333 333322 233455544432 233456677777877776 2 22
Q ss_pred HHHHHHHHH-------------HHhcCCHHHHHHHHhcCCC------CCc---------------ccHHHHHHHHHhCCC
Q 010031 231 ASWVSLIDG-------------FMRKGDLKKAGELFEQMPE------KGV---------------VSWTAMINGFSQNGE 276 (520)
Q Consensus 231 ~~~~~l~~~-------------~~~~~~~~~a~~~~~~~~~------~~~---------------~~~~~l~~~~~~~~~ 276 (520)
..|+-.... --+...+..|.++++++.. ... ..|..+|.--..++-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 223211110 0122334555555555431 010 013333332222111
Q ss_pred h--------hHHHHHHHHHH-HcCCCCCHHHH-HHHHHHhhc----cCC-------hHHHHHHHHHHHHcCCCCChhHHH
Q 010031 277 A--------EKALAMFFQML-DAGVRANDFTV-VSALSACAK----VGA-------LEAGVRVHNYISCNDFGLKGAIGT 335 (520)
Q Consensus 277 ~--------~~a~~~~~~m~-~~~~~p~~~~~-~~l~~~~~~----~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 335 (520)
- ....-.+++.+ -.+..|+..-. ...+..-++ .|+ .+++..+++.....-..-+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01111222211 11222222111 111111111 111 334444554443322222333333
Q ss_pred HHHHHHHhcC---CHHHHHHHHhcCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 010031 336 ALVDMYAKCG---NIEAASLVFGETKE----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTAC 407 (520)
Q Consensus 336 ~l~~~~~~~~---~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~ 407 (520)
.+.+.-...- ..+...+.++++.. .-..+|..++..-.+..-...|..+|.++.+.+..+ ....+..++.-+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 3322211111 24444455554443 233467788888888888999999999999988888 444677777755
Q ss_pred HccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCC---C--CHHHHHHHHHHHHHcCCHH
Q 010031 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET---P--DFVIWGALFCACRTHKDTK 482 (520)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~ 482 (520)
| .++..-|.++|+.-.+++| -++..-...+.-+...++-..|..+|++...+ | ...+|..++.--..-|+..
T Consensus 413 c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 4 5888999999998776653 33344466777888899999999999987653 2 3468999999888999999
Q ss_pred HHHHHHHHHhcCCCC
Q 010031 483 IAKIALQSSCSLNLS 497 (520)
Q Consensus 483 ~A~~~~~~~~~~~p~ 497 (520)
.+.++-++.....|.
T Consensus 490 si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHHHHHHHhcch
Confidence 999999999988884
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.2e-06 Score=74.97 Aligned_cols=108 Identities=12% Similarity=0.003 Sum_probs=91.8
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A 484 (520)
..+.+++.+|+..|.++++ . .+-|...|..-..+|.+.|.++.|++-.+.... .|. ..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~-l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE-L-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh-c-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 5678999999999999985 2 244677888899999999999999999998775 454 55899999999999999999
Q ss_pred HHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 485 KIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 485 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
++.|+++++++|++......|..+-.+.+.+.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988887776544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-05 Score=67.81 Aligned_cols=183 Identities=13% Similarity=-0.005 Sum_probs=134.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010031 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 406 (520)
|..+ ..+-..+...|+-+....+...... .+.......+....+.|++..|...+++.... -++|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHH
Confidence 3444 5566777778888887777776443 34456666888899999999999999999874 24566799999999
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 484 (520)
|.+.|+++.|..-|.+..+-. +-++...+.+.-.|.-.|+++.|..++..... ..|..+-..+..+....|++++|
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 999999999999999988532 34456778888888899999999999988655 23677888888889999999999
Q ss_pred HHHHHHHhcCCCCCc-chhHHHHhhhhhccCCCcc
Q 010031 485 KIALQSSCSLNLSIP-QAMSYCQTFMQQKGDGRTW 518 (520)
Q Consensus 485 ~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~~ 518 (520)
..+...-+ .|+.+ ....++.....+.|.+.-|
T Consensus 222 ~~i~~~e~--~~~~~~~~~~~l~~~~~~~~~~~~~ 254 (257)
T COG5010 222 EDIAVQEL--LSEQAANNVAALRAAASQSGAWTQL 254 (257)
T ss_pred Hhhccccc--cchhHhhHHHHHHHhhcccchhHHH
Confidence 98876633 23222 2233444444444444333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.4e-06 Score=66.44 Aligned_cols=109 Identities=14% Similarity=0.012 Sum_probs=77.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 439 (520)
++..+..+...+...|++++|...|+.+.. ..|+ ...+..+..++...|++++|...|++..+. -+.+...+..+
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~l 98 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQT 98 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHH
Confidence 333345566777788888888888888877 4554 447777888888888888888888888742 24456677888
Q ss_pred HHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHH
Q 010031 440 VNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFC 473 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~ 473 (520)
..++.+.|++++|+..+++... .|+ +..|.....
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 8888888888888888888654 344 444444333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.3e-05 Score=63.78 Aligned_cols=164 Identities=12% Similarity=0.146 Sum_probs=129.0
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHH
Q 010031 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMI 369 (520)
Q Consensus 293 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~ 369 (520)
.|+......+-..+...|+-+....+....... ...+......++....+.|++..|...+++... +|...|+.+.
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 443333355566677777777777776665422 245666677788999999999999999998776 5778999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 370 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
-+|.+.|+.+.|..-|.+..+ +.|+. ..++.+...+.-.|+.+.|..++..... . -.-+..+-..+..+....|+
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l-~-~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL-S-PAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh-C-CCCchHHHHHHHHHHhhcCC
Confidence 999999999999999999998 56654 4888888889999999999999999874 2 13366677888889999999
Q ss_pred hHHHHHHHhhCCC
Q 010031 449 VDKALNFINKMPE 461 (520)
Q Consensus 449 ~~~A~~~~~~~~~ 461 (520)
+++|.++...-..
T Consensus 218 ~~~A~~i~~~e~~ 230 (257)
T COG5010 218 FREAEDIAVQELL 230 (257)
T ss_pred hHHHHhhcccccc
Confidence 9999999876554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.4e-06 Score=69.36 Aligned_cols=134 Identities=8% Similarity=0.033 Sum_probs=105.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.. +.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCC
Confidence 4568889998887555433322 21 01223677788888888877532 5677899999999999999
Q ss_pred hHHHHHHHhhCCC--CCCHHHHHHHHHH-HHHcCC--HHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 449 VDKALNFINKMPE--TPDFVIWGALFCA-CRTHKD--TKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 449 ~~~A~~~~~~~~~--~~~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+++|...+++... +.+...+..+..+ +...|+ .++|.++++++++.+|+++.++..+|..+.+.|+-+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~ 161 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYA 161 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Confidence 9999999999765 3467788888887 467787 599999999999999999999999999999999854
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00012 Score=74.27 Aligned_cols=281 Identities=9% Similarity=0.023 Sum_probs=180.3
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 010031 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242 (520)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 242 (520)
+...+..|+..+...+++++|.++.+...+.. +.....|..+...+.+.++.+.+.-+ . ++.....
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~-----------~l~~~~~ 95 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N-----------LIDSFSQ 95 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h-----------hhhhccc
Confidence 45688899999999999999999999766652 33444555555567777776665544 2 2222233
Q ss_pred cCCHHHHHHHHhcCCCC--CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHH
Q 010031 243 KGDLKKAGELFEQMPEK--GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320 (520)
Q Consensus 243 ~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (520)
..++.....+...+..- +-.++..++.+|-+.|+.++|..+|+++++.. +-|+...+.+...|... ++++|.+++.
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 33333333333333321 23467788999999999999999999999986 56778889999889888 9999999988
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHH
Q 010031 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTV 399 (520)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~ 399 (520)
++... |...+++..+.++|.++..-++. +.+.-..+.+.+... |..--..+
T Consensus 174 KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-------------d~d~f~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 174 KAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-------------DFDFFLRIERKVLGHREFTRLVGL 225 (906)
T ss_pred HHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-------------cchHHHHHHHHHHhhhccchhHHH
Confidence 77653 66677888899988887764433 233333344444332 22223345
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-
Q 010031 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTH- 478 (520)
Q Consensus 400 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~- 478 (520)
+..+-..|...++++++..+++.+.+ . -+-|.....-++.+|. +.+.. ...|++.. -+. .....
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~-~-~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l---------~~s-~l~~~~ 290 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILE-H-DNKNNKAREELIRFYK--EKYKD-HSLLEDYL---------KMS-DIGNNR 290 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHh-c-CCcchhhHHHHHHHHH--HHccC-cchHHHHH---------HHh-ccccCC
Confidence 66666778888999999999999985 2 1334455556666664 21111 11111111 111 11222
Q ss_pred CCHHHHHHHHHHHhcCCCCCcchh
Q 010031 479 KDTKIAKIALQSSCSLNLSIPQAM 502 (520)
Q Consensus 479 g~~~~A~~~~~~~~~~~p~~~~~~ 502 (520)
..+..|+.-|++.+..+|.+-..+
T Consensus 291 ~~~~~~i~~fek~i~f~~G~yv~H 314 (906)
T PRK14720 291 KPVKDCIADFEKNIVFDTGNFVYH 314 (906)
T ss_pred ccHHHHHHHHHHHeeecCCCEEEE
Confidence 456778888888888888765444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.6e-05 Score=62.72 Aligned_cols=193 Identities=14% Similarity=0.151 Sum_probs=88.0
Q ss_pred CCChhHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 010031 274 NGEAEKALAMFFQMLD---AG-VRANDFT-VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348 (520)
Q Consensus 274 ~~~~~~a~~~~~~m~~---~~-~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 348 (520)
..+.++..+++.+++. +| ..++..+ |..++-+....|+.+.|...++.+.+.- +.+..+...-.-.+...
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~---- 99 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEAT---- 99 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHh----
Confidence 3456677777666653 23 3444433 3344455556666666666666655432 22222222222223334
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcC
Q 010031 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428 (520)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 428 (520)
|++++|+++|+.+.+.. +-|.+++..-+...-..|+--+|++-+....+.
T Consensus 100 ---------------------------~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-- 149 (289)
T KOG3060|consen 100 ---------------------------GNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-- 149 (289)
T ss_pred ---------------------------hchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--
Confidence 44555555555554432 112234433333333344444444444444432
Q ss_pred CCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCCcch
Q 010031 429 IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHK---DTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
+..|...|..+.+.|...|++++|.-.++++.- .| ++..+..+...+.-.| +.+-|.++|+++++++|.+...
T Consensus 150 F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 150 FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 244455555555555555555555555555322 22 2333333333322211 3444555555555555544433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-05 Score=79.88 Aligned_cols=121 Identities=6% Similarity=-0.066 Sum_probs=106.0
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-hHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHH
Q 010031 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWG 469 (520)
Q Consensus 393 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~ 469 (520)
...+...+..|.....+.|.+++|..+++...+ +.|+. .....++.++.+.+++++|...+++... .|+ .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 445677899999999999999999999999985 36664 5677889999999999999999999776 455 55677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 470 ALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.+..++.+.|++++|..+|++++..+|+++.++..+|..+...|+.+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~ 205 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALW 205 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 77788999999999999999999999999999999999999999865
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0022 Score=59.92 Aligned_cols=386 Identities=12% Similarity=0.105 Sum_probs=229.8
Q ss_pred CCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHH
Q 010031 60 FASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136 (520)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 136 (520)
+-|..+|..|+.-+..+ .++++++.++++.. .....|..-|..-.+..+++....+|.+....- .+...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 56889999999877666 99999999999875 355789999999999999999999999987643 3444555444
Q ss_pred HHHh-ccCChhhH----HHHHHHH-HHhCCCCCh-hHHHHHHHH---------HHhcCChhHHHHHhccCCCCCCCCCch
Q 010031 137 KSVA-SLSLLSLG----RGLHCLI-VKSGVEYDA-FVRVHLADM---------YVQLGKTRGAFKVFDETPEKNKSESVL 200 (520)
Q Consensus 137 ~~~~-~~~~~~~a----~~~~~~~-~~~~~~~~~-~~~~~l~~~---------~~~~g~~~~a~~~~~~~~~~~~~~~~~ 200 (520)
.--. ..++.... .+.|+-. .+.|+++-. ..|+..+.. |....+++..+++++++....+..=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 4322 22333332 2333333 333543322 245544443 344556778888998888643221122
Q ss_pred hHHHH------HHHH-------HhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhc-------CCHHH--HHHHHhcC--
Q 010031 201 LWNVL------INGC-------SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK-------GDLKK--AGELFEQM-- 256 (520)
Q Consensus 201 ~~~~l------~~~~-------~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~--a~~~~~~~-- 256 (520)
.|+.. |+.. -+...+..|.++++++. .+.+++.+. |-.++ ..+++...
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~--------~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQ--------NLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH--------HHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 23221 1111 11223445555554443 122222111 11111 11111110
Q ss_pred -CC------CC--------cccHHHHHH--------------HHHhCCC--------------hhHHHHHHHHHHHcCCC
Q 010031 257 -PE------KG--------VVSWTAMIN--------------GFSQNGE--------------AEKALAMFFQMLDAGVR 293 (520)
Q Consensus 257 -~~------~~--------~~~~~~l~~--------------~~~~~~~--------------~~~a~~~~~~m~~~~~~ 293 (520)
.+ .+ ..+|..-+. .+...++ -+++..+++...+.-..
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~ 325 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK 325 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 00 01 112222221 1222222 34445555554433222
Q ss_pred CCHHHHHHHHHHh---hccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHH
Q 010031 294 ANDFTVVSALSAC---AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDLLTW 365 (520)
Q Consensus 294 p~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~ 365 (520)
-+..+|..+...- ......+....+++++.......-.-+|..+++.-.+...+..|+.+|.++.+ .++...
T Consensus 326 ~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa 405 (656)
T KOG1914|consen 326 ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVA 405 (656)
T ss_pred HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHH
Confidence 2333333332211 11123556666777766544333345677788888999999999999998876 266788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC--hhHHHHHHHH
Q 010031 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNL 442 (520)
Q Consensus 366 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~ 442 (520)
++++.-+| .++..-|.++|+--.+. -+|.. -....+.-+...++-..+..+|++.... +++|+ ..+|..++.-
T Consensus 406 ~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 406 AALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHH
Confidence 88888776 57889999999986663 34444 4456677778899999999999999864 56665 4799999999
Q ss_pred HhccCChHHHHHHHhhCC
Q 010031 443 LSRVGQVDKALNFINKMP 460 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~ 460 (520)
-..-|++..+.++-+++.
T Consensus 482 ES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHhcccHHHHHHHHHHHH
Confidence 999999999999987754
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.4e-05 Score=69.96 Aligned_cols=143 Identities=16% Similarity=0.154 Sum_probs=96.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-hhHHHHHHHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNL 442 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 442 (520)
+......+...|++++|+..++.++.. .|+.. .+......+...++..+|.+.++++... .|+ ....-.+..+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHH
Confidence 333344455667788888888887774 55555 4444455677788888888888887742 454 4455667778
Q ss_pred HhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 443 LSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
|.+.|++++|+..+++... +.|+..|..|..+|...|+..+|.....+...+..+--.+...+-.+-.+.
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 8888888888888877543 345677888888888888888888777777776665555555554444443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.9e-05 Score=60.74 Aligned_cols=125 Identities=17% Similarity=0.160 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh--hHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV--KHHT 437 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ 437 (520)
.|..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+.... ..|+. ....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHH
Confidence 344455555 478888888889988885 3333 244445567888999999999999988532 22221 2445
Q ss_pred HHHHHHhccCChHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010031 438 VVVNLLSRVGQVDKALNFINKMPET-PDFVIWGALFCACRTHKDTKIAKIALQSSC 492 (520)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 492 (520)
.+..++...|++++|+..++....+ ..+..+......+.+.|++++|...|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 6788888999999999999886542 344566677788999999999999998874
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.2e-06 Score=66.00 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=40.5
Q ss_pred HHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 438 VVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.+...+...|++++|.++|+-+.. +-+..-|..|..++...|++++|+..|.++..++|++|.++.++|.++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 334444455555555555554332 22344455555555555555555555555555555555555555555555555
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0014 Score=59.71 Aligned_cols=415 Identities=12% Similarity=0.072 Sum_probs=203.5
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCC------hHHHHHHHHHHhcCCChHHHHHHhcccCCC-CcchHHHHHHH--HHhC
Q 010031 37 LIHSSNSTKQLRQIHAQIILHNLFAS------SRITTQLISSASLHKSIDYALSIFDHFTPK-NLHIFNVLIRG--LAEN 107 (520)
Q Consensus 37 ~l~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~--~~~~ 107 (520)
+|...+++.++..++.++.+.- ..+ ...-+.++++|-. ++++.....+....+. ....|-.+..+ +.+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 4666778899988888887653 112 2233466666653 4455554444444331 13345555443 4567
Q ss_pred CChhHHHHHHHHhhhC--CCCCC------------cccHHHHHHHHhccCChhhHHHHHHHHHHhCC----CCChhHHHH
Q 010031 108 SHFQSCISHFVFMLRL--SVRPN------------RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV----EYDAFVRVH 169 (520)
Q Consensus 108 ~~~~~A~~~~~~m~~~--~~~p~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ 169 (520)
+.+++|++.+..-... +..|. -.-=+..+..+...|++.+++.+++++...=+ .-+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8888888888776654 22221 11113445566788888888888888776533 367778887
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCC---------hhHHHHHHhhCCC-------------
Q 010031 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY---------LRKAVELFGMMPK------------- 227 (520)
Q Consensus 170 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~~~------------- 227 (520)
++-.+.+.=-.+. -+.+ ...+-| -|.-++-.|.+.=. +.-...++..+.+
T Consensus 173 ~vlmlsrSYfLEl----~e~~-s~dl~p---dyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~ 244 (549)
T PF07079_consen 173 AVLMLSRSYFLEL----KESM-SSDLYP---DYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPL 244 (549)
T ss_pred HHHHHhHHHHHHH----HHhc-ccccCh---HHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHH
Confidence 6665544211111 0111 111111 12223333322110 0001111111110
Q ss_pred -------------CCHH-HHHHHHHHHHhcCCHHHHHHHHhcCCCC--------CcccHHHHHHHHHhCCChhHHHHHHH
Q 010031 228 -------------KNVA-SWVSLIDGFMRKGDLKKAGELFEQMPEK--------GVVSWTAMINGFSQNGEAEKALAMFF 285 (520)
Q Consensus 228 -------------~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~ 285 (520)
|+.. ....+...... +.+++..+.+.+... =+.++..++....+.++..+|.+.+.
T Consensus 245 mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 245 MQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 2211 11222222222 444444443333221 13467777777777777777777776
Q ss_pred HHHHcCCCCCHHHHHH-------HHHHhh-ccC---ChHHHHHHHHHHHHcCCCCChhHHHHHHH---HHHhcCC-HHHH
Q 010031 286 QMLDAGVRANDFTVVS-------ALSACA-KVG---ALEAGVRVHNYISCNDFGLKGAIGTALVD---MYAKCGN-IEAA 350 (520)
Q Consensus 286 ~m~~~~~~p~~~~~~~-------l~~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~-~~~a 350 (520)
-+... .|+...-.. +-+..+ ... +...-..+|+.+...++. .......|+. -+-+.|. -++|
T Consensus 323 lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~deka 399 (549)
T PF07079_consen 323 LLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKA 399 (549)
T ss_pred HHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHH
Confidence 65542 333221111 111111 111 122223344444433322 1112222222 2333343 6677
Q ss_pred HHHHhcCCC---CChhHHHHH----HHHHHH---cCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HHccCcHH
Q 010031 351 SLVFGETKE---KDLLTWTAM----IWGLAI---HGRYEQAIQYFKKMMYSGTEPDGT----VFLAILTA--CWYSGQVK 414 (520)
Q Consensus 351 ~~~~~~~~~---~~~~~~~~l----~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~--~~~~g~~~ 414 (520)
.++++.+.+ -|...-|.. =.+|.+ ......-..+-+-+.+.|+.|-.+ .-+.|..+ +...|++.
T Consensus 400 lnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~ 479 (549)
T PF07079_consen 400 LNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYH 479 (549)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHH
Confidence 777776655 233322221 122221 122333334444445566666332 44444443 45678888
Q ss_pred HHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHH
Q 010031 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGAL 471 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 471 (520)
++.-.-.-+.+ +.|++.+|..++-++....++++|..++..++ |+..++++-
T Consensus 480 kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 480 KCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence 87766666553 57788888888888888888888888888775 455555543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-05 Score=61.31 Aligned_cols=106 Identities=14% Similarity=0.020 Sum_probs=77.4
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC----HHHHHHHH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD----FVIWGALF 472 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~ 472 (520)
++..+...+...|++++|.+.+..+....+-.+ ....+..+..++.+.|++++|...++.+.. .|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445566667778888888888888875331111 134556688888888888888888887654 233 45677777
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCCcchhHH
Q 010031 473 CACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504 (520)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 504 (520)
.++...|+.++|...++++++..|+++.+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 88888999999999999999999988766543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-05 Score=74.76 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=74.5
Q ss_pred HHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHH
Q 010031 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTK 482 (520)
Q Consensus 405 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 482 (520)
..+...|+++.|++.|+++.+.. +.+...|..+..+|.+.|++++|+..++++.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 34556677777777777776421 33455666777777777888888877777654 234566777777777888888
Q ss_pred HHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 483 IAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 483 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
+|+..++++++++|+++.....++.+..+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888888888888777777765443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.2e-05 Score=61.87 Aligned_cols=147 Identities=14% Similarity=0.139 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI-LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (520)
.|..++-+....|+.+.|...++.+... + |.+.-...+ ..-+...|++++|+++++.+.++. +.|..++-.-+.+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHH
Confidence 3455566667789999999999999886 3 655422222 223456899999999999998643 5566777777777
Q ss_pred HhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 443 LSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.-..|+.-+|++-+.+... ..|...|.-+...|...|++++|.-.+++++=..|.+|-.+-.++.++.-.|-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 7788888888887776554 46899999999999999999999999999999999999999999998876664
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.5e-05 Score=72.93 Aligned_cols=140 Identities=14% Similarity=0.042 Sum_probs=100.6
Q ss_pred CChhHHHHHHHHHHH--c---CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcc--------CcHHHHHHHHHHcHh
Q 010031 360 KDLLTWTAMIWGLAI--H---GRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYS--------GQVKLALNFFDSMRF 425 (520)
Q Consensus 360 ~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 425 (520)
.+...|...+++... . ++...|..+|++.++ ..|+.. .+..+..++... +++..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 455666666665432 2 236789999999998 678765 454444433221 233445555555432
Q ss_pred hcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcch
Q 010031 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 426 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
....+.+...|..+.......|++++|...++++.. .|+...|..+...+...|+.++|...+++++.++|.+|..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 112344557788887777788999999999999776 6888889999999999999999999999999999998863
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.6e-05 Score=69.97 Aligned_cols=121 Identities=15% Similarity=0.180 Sum_probs=75.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcH
Q 010031 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQV 413 (520)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 413 (520)
..|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..+. .| +...+..-...|.+.+++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCH
Confidence 344555555666666666666666655555555666666666666777777666653 23 334555555556667777
Q ss_pred HHHHHHHHHcHhhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 414 KLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 414 ~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
+.|+++.+++.. ..|+ ..+|..|+.+|.+.|+++.|+..++.++
T Consensus 251 ~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777664 2343 4567777777777777777777766655
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0096 Score=59.24 Aligned_cols=457 Identities=11% Similarity=0.061 Sum_probs=225.6
Q ss_pred ccCchHHHHHHHHHHHhCCCCChHHHHHHHHH--HhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHH
Q 010031 41 SNSTKQLRQIHAQIILHNLFASSRITTQLISS--ASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCIS 115 (520)
Q Consensus 41 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~ 115 (520)
++.+..|.+....+.+.. |+. .|...+.+ ..+.|+.++|..+++.... .|..+...+-..|...++.++|..
T Consensus 22 ~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 345666766666666553 332 22333333 3478888888888876542 355677777788888888999999
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------hhHHHH
Q 010031 116 HFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK----------TRGAFK 185 (520)
Q Consensus 116 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~ 185 (520)
+|++..+ ..|+......+..++.+.+++.+-.++--++-+. ++..++.+=++++.+...-. ..-|.+
T Consensus 99 ~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 9988876 4477666677777888887776655555444442 33344444344444433211 123455
Q ss_pred HhccCCCCC-CCCCchhHHHHHHHHHhcCChhHHHHHHhh-CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 010031 186 VFDETPEKN-KSESVLLWNVLINGCSKIGYLRKAVELFGM-MP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259 (520)
Q Consensus 186 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 259 (520)
.++.+.+.+ ..-+..-...-...+-..|++++|..++.. .. ..+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 555555443 111111112222334456778888777722 21 133334445566667777777766666655543
Q ss_pred CcccHHHHHHHHHh----------------CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 010031 260 GVVSWTAMINGFSQ----------------NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323 (520)
Q Consensus 260 ~~~~~~~l~~~~~~----------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 323 (520)
+..-|...++.+.+ .+..+...+..++......+-......-+..-+...|+.+++...|-+-
T Consensus 256 ~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k- 334 (932)
T KOG2053|consen 256 GNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK- 334 (932)
T ss_pred CCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH-
Confidence 32223333322111 1112222222222222111100011111111122345555543333211
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhH--------HHHHHHHHHHcC-----CHHHHHHHHHHHH
Q 010031 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-DLLT--------WTAMIWGLAIHG-----RYEQAIQYFKKMM 389 (520)
Q Consensus 324 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~l~~~~~~~~-----~~~~a~~~~~~~~ 389 (520)
.|.. ..|..=+..|...=..+.-..++...... +..+ +...+..-...| .-+.-..++++..
T Consensus 335 -fg~k---pcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~ 410 (932)
T KOG2053|consen 335 -FGDK---PCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLK 410 (932)
T ss_pred -hCCC---cHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Confidence 1111 11111122222222223333333322221 0000 111111111122 1222333333321
Q ss_pred ---HCC------CCCCHH---------HHHHHHHHHHccCcHH---HHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 390 ---YSG------TEPDGT---------VFLAILTACWYSGQVK---LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 390 ---~~~------~~p~~~---------~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
++| +-|+.. +.+.|+..+.+.++.. +|+.+++...... +.|..+-..+++.|.-.|-
T Consensus 411 ~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa 488 (932)
T KOG2053|consen 411 LTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGA 488 (932)
T ss_pred HHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcC
Confidence 122 233322 4456777788877654 5666666655322 3344555678889998899
Q ss_pred hHHHHHHHhhCCCC-CCHHHHHHHH-HHHHHcCCHHHHHHHHHHHhcCCC-CCcchhHHHHhhhh
Q 010031 449 VDKALNFINKMPET-PDFVIWGALF-CACRTHKDTKIAKIALQSSCSLNL-SIPQAMSYCQTFMQ 510 (520)
Q Consensus 449 ~~~A~~~~~~~~~~-~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~ 510 (520)
+..|.++++.+..+ -...|...++ .-+...|++.-+...+...+...- +......+.+.+|+
T Consensus 489 ~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr 553 (932)
T KOG2053|consen 489 FPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYR 553 (932)
T ss_pred ChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 99999999987653 2233444444 345667888888888888877543 33344444444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.6e-06 Score=48.31 Aligned_cols=35 Identities=26% Similarity=0.479 Sum_probs=28.7
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCc
Q 010031 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129 (520)
Q Consensus 95 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 129 (520)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888888888888888888888888888888873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.3e-06 Score=56.76 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=51.7
Q ss_pred HHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q 010031 439 VVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 499 (520)
+...+.+.|++++|++.|+++.. .| +...|..+..++...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 56778899999999999999766 45 466888899999999999999999999999999986
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.7e-06 Score=47.46 Aligned_cols=34 Identities=32% Similarity=0.769 Sum_probs=29.9
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 295 (520)
.+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3788999999999999999999999999888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.2e-06 Score=47.26 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhhhCCCCC
Q 010031 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127 (520)
Q Consensus 95 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 127 (520)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.3e-06 Score=46.90 Aligned_cols=33 Identities=24% Similarity=0.578 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 294 (520)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00011 Score=58.65 Aligned_cols=113 Identities=16% Similarity=0.153 Sum_probs=80.3
Q ss_pred cCCHHHHHHHHhcCCCC--Ch----hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCcHHH
Q 010031 344 CGNIEAASLVFGETKEK--DL----LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACWYSGQVKL 415 (520)
Q Consensus 344 ~~~~~~a~~~~~~~~~~--~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~ 415 (520)
.++...+...++.+.+. +. ...-.+...+...|++++|...|+.+......|+.. ....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55556555555555542 11 223345677888999999999999999875333322 45567778889999999
Q ss_pred HHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhC
Q 010031 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 416 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
|+..++... .. ......+....++|.+.|++++|+..|++.
T Consensus 104 Al~~L~~~~-~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIP-DE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhcc-Cc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 999997754 22 334456778899999999999999999864
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0001 Score=60.90 Aligned_cols=130 Identities=9% Similarity=0.103 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHH
Q 010031 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD--GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (520)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 439 (520)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..... +.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence 34566666677777777777777777766432222 2366666667777777777777777766421 2234455556
Q ss_pred HHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
..+|...|+...+..-++... ..+++|.+.++++++.+|++ +...+..+...|.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666555443332211 12678899999999999887 4444444444443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00016 Score=64.76 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA-CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
.+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+.+ +.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467788888888888999999999998642 2244455555544 334677778999999998754 667778888999
Q ss_pred HHhccCChHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 442 LLSRVGQVDKALNFINKMPET-PD----FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
.+.+.|+.+.|..+|++.... |. ...|...+.--.+.|+.+....+.+++.+..|++.......-.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 999999999999999997762 33 34899999999999999999999999999999977766655444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00011 Score=57.97 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
..+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...++...
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444455555555555444421 1122344444444445555555555555444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00019 Score=66.59 Aligned_cols=124 Identities=13% Similarity=0.069 Sum_probs=87.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChH
Q 010031 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313 (520)
Q Consensus 234 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 313 (520)
..|+..+...++++.|..+|+++.+.++.....+++.+...++..+|.+++++.+... +-+...+..-...+.+.++.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 4455556666777788888888777776666677777777777778888888777542 334555555556677777888
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 010031 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359 (520)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (520)
.|..+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.++-
T Consensus 252 lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888888777654 23455777777788888888877777776653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.3e-05 Score=55.96 Aligned_cols=93 Identities=14% Similarity=0.057 Sum_probs=55.1
Q ss_pred HHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcC
Q 010031 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHK 479 (520)
Q Consensus 402 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g 479 (520)
.+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.+++... +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 34445555666666666666655321 22234555566666666666666666665433 223345666666677777
Q ss_pred CHHHHHHHHHHHhcCCC
Q 010031 480 DTKIAKIALQSSCSLNL 496 (520)
Q Consensus 480 ~~~~A~~~~~~~~~~~p 496 (520)
++++|...++++++..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 77777777777776665
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.022 Score=56.86 Aligned_cols=393 Identities=16% Similarity=0.150 Sum_probs=225.8
Q ss_pred HHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHH--hccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 010031 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV--ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180 (520)
Q Consensus 103 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 180 (520)
.....+++.+|+....++.+.- |+. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...|+.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 3456778999999998887732 554 355566655 5889999999888877765543 778888999999999999
Q ss_pred hHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChh----HHHHHHhhCCCCCHHHHHHHHHHHHhcC-C---------H
Q 010031 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR----KAVELFGMMPKKNVASWVSLIDGFMRKG-D---------L 246 (520)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~ 246 (520)
++|..++++.... -|+......+..+|++.+++. .|++++....+. ...+-++++.+...- . .
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-AYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-cchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999998876 566777778888888887765 466666655443 333334444443321 1 2
Q ss_pred HHHHHHHhcCCCCC-cc-c---HHHHHHHHHhCCChhHHHHHHH-HHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHH
Q 010031 247 KKAGELFEQMPEKG-VV-S---WTAMINGFSQNGEAEKALAMFF-QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320 (520)
Q Consensus 247 ~~a~~~~~~~~~~~-~~-~---~~~l~~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (520)
.-|.+.++.+.+.+ .. + .......+-..|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 23455555554433 11 1 1122334456788899988884 33333233344455566777788888888888888
Q ss_pred HHHHcCCCCChhHHHHHHHHHH----------------hcCCHHHHHHHHhcCCCC-ChhHHHHHHHHH---HHcCCHHH
Q 010031 321 YISCNDFGLKGAIGTALVDMYA----------------KCGNIEAASLVFGETKEK-DLLTWTAMIWGL---AIHGRYEQ 380 (520)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~---~~~~~~~~ 380 (520)
++...+.. | |...++.+. ..+..+...+..++.... .-.+|-+-+.+. ..-|+.++
T Consensus 251 ~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee 326 (932)
T KOG2053|consen 251 RLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEE 326 (932)
T ss_pred HHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHH
Confidence 88877632 2 333222211 112222222222222221 111222222222 23466666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChh-------HHHHHHHHHhccCC-----
Q 010031 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK-------HHTVVVNLLSRVGQ----- 448 (520)
Q Consensus 381 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~----- 448 (520)
+...|-+- -|-.| .+..=+..|...=..+.-..++...... .++.. -+...+....-.|.
T Consensus 327 ~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ 398 (932)
T KOG2053|consen 327 MLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLP 398 (932)
T ss_pred HHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCC
Confidence 65544332 22233 2222233333333445555566555421 22221 12222322233332
Q ss_pred hHHHHHHHhhCC-------C-----CCCH---------HHHHHHHHHHHHcCCH---HHHHHHHHHHhcCCCCCcchhHH
Q 010031 449 VDKALNFINKMP-------E-----TPDF---------VIWGALFCACRTHKDT---KIAKIALQSSCSLNLSIPQAMSY 504 (520)
Q Consensus 449 ~~~A~~~~~~~~-------~-----~~~~---------~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~ 504 (520)
.+.-..++.+.. + -|.. -+.+.++..+.+.++. -+|+-+++..+...|.|+..-..
T Consensus 399 ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLl 478 (932)
T KOG2053|consen 399 ADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLL 478 (932)
T ss_pred hHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHH
Confidence 222233332211 1 0111 2346677888887765 57889999999999999999999
Q ss_pred HHhhhhhccC
Q 010031 505 CQTFMQQKGD 514 (520)
Q Consensus 505 l~~~~~~~g~ 514 (520)
+..+|.-.|-
T Consensus 479 LiriY~~lGa 488 (932)
T KOG2053|consen 479 LIRIYSYLGA 488 (932)
T ss_pred HHHHHHHhcC
Confidence 9999998875
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=2e-05 Score=56.11 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=33.4
Q ss_pred CcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 010031 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPD-FVIWGALFCACRTHKDTKIAKIALQ 489 (520)
Q Consensus 411 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 489 (520)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|+.++++....|. ......+..++.+.|++++|+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 445555555555543221111222333345555555555555555554111121 2222333444555555555555554
Q ss_pred H
Q 010031 490 S 490 (520)
Q Consensus 490 ~ 490 (520)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.3e-06 Score=55.18 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=35.0
Q ss_pred ccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHH
Q 010031 445 RVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 445 ~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 506 (520)
+.|++++|++.|+++.. .| +...+..+..+|.+.|++++|..++++++..+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 45566666666665543 22 4555555666666666666666666666666666555544443
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.6e-05 Score=54.17 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=49.0
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCC
Q 010031 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHK-DTKIAKIALQSSCSLNL 496 (520)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 496 (520)
++..|..+...+...|++++|+..|++... .| ++..|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345677777888888888888888877654 34 4567777777888888 68888888888888877
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.02 Score=52.45 Aligned_cols=144 Identities=12% Similarity=0.062 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
..|..++.+..+..-.+.|..+|-+..+.| +.++...++.++.-+ ..|+...|..+|+.-...+ +.+...-+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKF--PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 457777777778888999999999999988 566777888888755 4688899999999876543 233333355667
Q ss_pred HHhccCChHHHHHHHhhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhh
Q 010031 442 LLSRVGQVDKALNFINKMPET----PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFM 509 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 509 (520)
.+.+.++-+.|..+|+....+ .-...|..++.--..-|+...+..+-+++.++.|.....-..+.+.-
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 778899999999999965542 22568899998888999999999999999999887654444444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.5e-05 Score=47.38 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHh
Q 010031 466 VIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQT 507 (520)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 507 (520)
.+|..+..+|...|++++|++.++++++.+|+|+.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999999998875
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00019 Score=66.81 Aligned_cols=120 Identities=8% Similarity=0.013 Sum_probs=92.8
Q ss_pred CCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC-C-----CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCccc
Q 010031 58 NLFASSRITTQLISSASLHKSIDYALSIFDHFTP-K-----NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131 (520)
Q Consensus 58 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 131 (520)
+.+.+......+++.+....+++.+..++-+.+. | -..+.+++++.|...|..+.+++++..=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 4455666677777777777888888888776653 1 234567888888888888999988888888888899999
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010031 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177 (520)
Q Consensus 132 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (520)
++.|++.+.+.|++..|.++...|...+.-.++.++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999998888888888777666777776666666555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.8e-05 Score=52.49 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=57.1
Q ss_pred HHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHh
Q 010031 440 VNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQT 507 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 507 (520)
...|.+.+++++|.++++++.. +.++..|......+...|++++|...++++++..|+++.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 3568889999999999999776 3456678888888999999999999999999999998887765543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0011 Score=59.70 Aligned_cols=109 Identities=13% Similarity=0.034 Sum_probs=62.3
Q ss_pred HccCcHHHHHHHHHHcHhh--cCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHH--HHHcCCHHH
Q 010031 408 WYSGQVKLALNFFDSMRFD--YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCA--CRTHKDTKI 483 (520)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~ 483 (520)
.+.|++..|.+.|.+.... ....|+...|.....+..+.|+..+|+.-.+....-.+..++..+..+ +...+++++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665531 122344556666667777778888888777776642223333333333 555777888
Q ss_pred HHHHHHHHhcCCCC--CcchhHHHHhhhhhccCCC
Q 010031 484 AKIALQSSCSLNLS--IPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 484 A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 516 (520)
|.+.++++.+...+ ....+......+.+..+.+
T Consensus 340 AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd 374 (486)
T KOG0550|consen 340 AVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKD 374 (486)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhh
Confidence 88888887765443 4444444444444443433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=6e-05 Score=53.65 Aligned_cols=81 Identities=19% Similarity=0.406 Sum_probs=60.3
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHH
Q 010031 375 HGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 375 ~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (520)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++. .+.. +.+......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5889999999999998533 12445666688899999999999999988 3211 223455556789999999999999
Q ss_pred HHHhh
Q 010031 454 NFINK 458 (520)
Q Consensus 454 ~~~~~ 458 (520)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0013 Score=59.22 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=11.1
Q ss_pred HHHHHHhCCChhHHHHHHHHH
Q 010031 267 MINGFSQNGEAEKALAMFFQM 287 (520)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~m 287 (520)
....|-..|++++|.+.|.+.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHH
Confidence 345555556666665555554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=4e-05 Score=42.40 Aligned_cols=31 Identities=32% Similarity=0.713 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 292 (520)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.04 Score=53.44 Aligned_cols=200 Identities=13% Similarity=0.050 Sum_probs=104.2
Q ss_pred CCChHHHHHHHHHHhcCCChHHHHHHhcccCC-CCcchHHHHHHHH----------HhCCChhHHHHHHHHhhhCCCCCC
Q 010031 60 FASSRITTQLISSASLHKSIDYALSIFDHFTP-KNLHIFNVLIRGL----------AENSHFQSCISHFVFMLRLSVRPN 128 (520)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~----------~~~~~~~~A~~~~~~m~~~~~~p~ 128 (520)
.|.+..|..+...-...-.++-|...|-+... +....-..|-..+ .--|.+++|.++|-+|.++++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 56667776666665566666666666654432 2221111111111 113567777777766655332
Q ss_pred cccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHH
Q 010031 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD----AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204 (520)
Q Consensus 129 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 204 (520)
.+....+.|+|-.+.++++.- |-..| ...++.+...+.....+++|.+.+..-... ..
T Consensus 766 ------Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 766 ------AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred ------hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 344455666665554444321 11111 235666666666666777777766543321 23
Q ss_pred HHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHH
Q 010031 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284 (520)
Q Consensus 205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 284 (520)
.+.++.+..++++-..+.+.+.+ +....-.+..++.+.|.-++|.+.|-+...|. +.+..|...++|.+|.++-
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHH
Confidence 45566666666655555554443 33344555666666666666666655443332 2344555666666666654
Q ss_pred HH
Q 010031 285 FQ 286 (520)
Q Consensus 285 ~~ 286 (520)
+.
T Consensus 902 q~ 903 (1189)
T KOG2041|consen 902 QR 903 (1189)
T ss_pred Hh
Confidence 44
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00044 Score=56.94 Aligned_cols=100 Identities=13% Similarity=0.003 Sum_probs=47.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHH
Q 010031 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACR 476 (520)
Q Consensus 400 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~ 476 (520)
+..+...+...|++++|...+++.....+-++ ...++..+..+|...|++++|++.+++... .| ...++..+...+.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 33344444444555555555555442111011 112444555555555555555555555432 11 2233333333333
Q ss_pred -------HcCCHH-------HHHHHHHHHhcCCCCCc
Q 010031 477 -------THKDTK-------IAKIALQSSCSLNLSIP 499 (520)
Q Consensus 477 -------~~g~~~-------~A~~~~~~~~~~~p~~~ 499 (520)
..|+++ +|..+++++++.+|++.
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 555555 66777777788888644
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00083 Score=52.73 Aligned_cols=96 Identities=9% Similarity=0.003 Sum_probs=55.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 439 (520)
+......+..-+...|++++|..+|+-+.. +.|... -|..|..+|-..|++.+|+..|..... .. +-++..+-.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-L~-~ddp~~~~~a 109 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-IK-IDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-CCCchHHHHH
Confidence 334444455555666666666666666665 455444 445555555566666666666666653 21 2334555566
Q ss_pred HHHHhccCChHHHHHHHhhCC
Q 010031 440 VNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~ 460 (520)
..++...|+.+.|++.|+...
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 666666666666666666543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0008 Score=51.66 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTV 438 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 438 (520)
++..++..+...|++++|...|+.+... .|+ ...+..+..++...|+++.|...++.+....+-.+ ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4555666677778888888888777763 233 23555567777778888888888887764322111 1345666
Q ss_pred HHHHHhccCChHHHHHHHhhCCC
Q 010031 439 VVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
+..++.+.|+.++|.+.++++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH
Confidence 77777778888888888877654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.012 Score=52.82 Aligned_cols=125 Identities=10% Similarity=0.015 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHH--
Q 010031 377 RYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL-- 453 (520)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-- 453 (520)
+...|...-.+..+ +.||.. .-..-..++.+.|++.++-.+++.+-+ . .|-+.++ ....+.+.|+.....
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK-~--ePHP~ia--~lY~~ar~gdta~dRlk 316 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK-A--EPHPDIA--LLYVRARSGDTALDRLK 316 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh-c--CCChHHH--HHHHHhcCCCcHHHHHH
Confidence 34444444444444 455544 233334455666666666666666653 2 3333332 222233444422110
Q ss_pred --HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 454 --NFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 454 --~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
+-++.|+ +.+..+...+..+....|++..|..-.+.+....|.. +.+..++.+-.
T Consensus 317 Ra~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIee 373 (531)
T COG3898 317 RAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEE 373 (531)
T ss_pred HHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHh
Confidence 1112222 2334455555555556666666666666665555542 33444444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00048 Score=59.40 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=41.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-hhHHHHHHHHHhccCChH
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQVD 450 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 450 (520)
.+.++|++|+..|.+.++ +.| |.+.|..-..+|.+.|.++.|++-.+.... +.|. ...|..|..+|...|+++
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcHH
Confidence 344455555555555554 333 222334444445555555555544444432 2232 234445555555555555
Q ss_pred HHHHHHhhCCC-CCCHHHH
Q 010031 451 KALNFINKMPE-TPDFVIW 468 (520)
Q Consensus 451 ~A~~~~~~~~~-~~~~~~~ 468 (520)
+|++.|++..+ .|+..+|
T Consensus 167 ~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHHhhhccCCCcHHH
Confidence 55555544443 3443333
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.72 E-value=5e-05 Score=41.97 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhCC
Q 010031 96 IFNVLIRGLAENSHFQSCISHFVFMLRLS 124 (520)
Q Consensus 96 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 124 (520)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00049 Score=49.97 Aligned_cols=81 Identities=15% Similarity=0.012 Sum_probs=61.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhCCC-CCCcccHHHHHHHHhccC--------ChhhHHHHHHHHHHhCCCCChhH
Q 010031 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSV-RPNRLTYPFVSKSVASLS--------LLSLGRGLHCLIVKSGVEYDAFV 166 (520)
Q Consensus 96 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 166 (520)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +......+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566777778999999999999999998 899999999998876543 23455667777777777777777
Q ss_pred HHHHHHHHHh
Q 010031 167 RVHLADMYVQ 176 (520)
Q Consensus 167 ~~~l~~~~~~ 176 (520)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 7777766543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.04 Score=50.14 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCh
Q 010031 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312 (520)
Q Consensus 233 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 312 (520)
.+..+.-+...|+...|.++-.+..-++-..|-..+.+++..++|++..++-.. +-++..|..++.+|.+.|+.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455556667777777777777666666777777777777777665554321 12336677777777777777
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 010031 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356 (520)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 356 (520)
.+|..+...+ .+..-+..|.++|++.+|.+.--+
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777666541 113455667777777777665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00019 Score=52.41 Aligned_cols=82 Identities=17% Similarity=0.081 Sum_probs=70.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
.+..++..+...|++++|...++++.. +.+...+..+...+...|++++|.+.++++++..|.++..+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 355677888899999999999998754 334567788888899999999999999999999999999999999999988
Q ss_pred cCCC
Q 010031 513 GDGR 516 (520)
Q Consensus 513 g~~~ 516 (520)
|+.+
T Consensus 82 ~~~~ 85 (100)
T cd00189 82 GKYE 85 (100)
T ss_pred HhHH
Confidence 8754
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00028 Score=58.34 Aligned_cols=47 Identities=15% Similarity=0.146 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 467 IWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
.+..+..++.+.|++++|...++++++..|+++..+..++.++...|
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 120 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG 120 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence 34444444445555555555555555555555555444454444444
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.001 Score=48.38 Aligned_cols=81 Identities=15% Similarity=0.066 Sum_probs=67.8
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccC--------ChHHHHHHHHHHHHcCCCCChhH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGV-RANDFTVVSALSACAKVG--------ALEAGVRVHNYISCNDFGLKGAI 333 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 333 (520)
+-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++.....+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556667777999999999999999999 999999999999887653 35567888999999999999999
Q ss_pred HHHHHHHHHh
Q 010031 334 GTALVDMYAK 343 (520)
Q Consensus 334 ~~~l~~~~~~ 343 (520)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00099 Score=58.59 Aligned_cols=105 Identities=14% Similarity=0.019 Sum_probs=77.0
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC----HHHHHHHH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD----FVIWGALF 472 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~ 472 (520)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+.. -|+ +..+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 455555444567889999999998886542111 024666788899999999999999988764 232 44555666
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 473 CACRTHKDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
..+...|+.++|...|+++++..|++..+-.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 7788899999999999999999998775543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00057 Score=63.74 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=70.7
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhhhC--CCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHH
Q 010031 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRL--SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171 (520)
Q Consensus 94 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 171 (520)
......++..+....+.+.+.+++.+.+.. ....-..|.+.+++.|...|..+.+..++..=...|+-||..+++.||
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 334444555555555566666666666543 122223344566666666776677766666666666666777777777
Q ss_pred HHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhc
Q 010031 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212 (520)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 212 (520)
+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777666666665555455555555545444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.077 Score=50.87 Aligned_cols=402 Identities=11% Similarity=0.046 Sum_probs=227.5
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccH-HHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHH
Q 010031 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY-PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171 (520)
Q Consensus 93 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 171 (520)
+-..|..+|.---...+.+.+..++..+.. -.|...-| ......=.+.|..+.+.++|++-+. +++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~--kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLS--KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHh--hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 445677777765555666777777777765 23555433 2233333577889999999998887 5667777777776
Q ss_pred HHHH-hcCChhHHHHHhccCCCC-CC-CCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHh---c--
Q 010031 172 DMYV-QLGKTRGAFKVFDETPEK-NK-SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR---K-- 243 (520)
Q Consensus 172 ~~~~-~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---~-- 243 (520)
..+. ..|+.+.....|+..+.. |. -.+...|...|..-..++++.....+|++..+.....++..-.-|.+ .
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCC
Confidence 6554 457777778888776542 21 12456778888888888899999999999888444444433333221 1
Q ss_pred ----CCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH--HHHH-------HhhccC
Q 010031 244 ----GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV--SALS-------ACAKVG 310 (520)
Q Consensus 244 ----~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~-------~~~~~~ 310 (520)
...+++.++-......... ...++..+ .+=..+...+-+.+..+.. .+-. .+....
T Consensus 201 ~~~l~~~d~~~~l~~~~~~~~~~---------~~~~~~~e--~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~ 269 (577)
T KOG1258|consen 201 EKILLSIDELIQLRSDVAERSKI---------THSQEPLE--ELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSE 269 (577)
T ss_pred hhhhcCHHHHHHHhhhHHhhhhc---------ccccChhH--HHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhH
Confidence 1223322222211110000 00011111 1101111111111111110 1111 111111
Q ss_pred ChHHHHHHHHHHHHc---C----CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHHcCCHHH
Q 010031 311 ALEAGVRVHNYISCN---D----FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL---LTWTAMIWGLAIHGRYEQ 380 (520)
Q Consensus 311 ~~~~a~~~~~~~~~~---~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~ 380 (520)
........++.-.+. . ..++..+|...+..-...|+.+.+.-+|+...-|-. ..|--.+.-....|+.+-
T Consensus 270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~ 349 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSL 349 (577)
T ss_pred hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhH
Confidence 122222222222211 0 123445677777777888999999888888776532 355555555556688888
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-hHHHHHHHHHhccCChHHHH---H
Q 010031 381 AIQYFKKMMYSGTE--PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQVDKAL---N 454 (520)
Q Consensus 381 a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~ 454 (520)
|..++....+--++ |....+.+. -+-..|+++.|..+++.+..+ . |+. ..-..-+....+.|..+.+. +
T Consensus 350 ~~~~~~~~~~i~~k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~ 424 (577)
T KOG1258|consen 350 ANNVLARACKIHVKKTPIIHLLEAR--FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNE 424 (577)
T ss_pred HHHHHHhhhhhcCCCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHH
Confidence 88887776653222 222222222 234578999999999999754 3 553 23334455666788888887 5
Q ss_pred HHhhCCC-CCCHHH----HHHHHHH-HHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 455 FINKMPE-TPDFVI----WGALFCA-CRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 455 ~~~~~~~-~~~~~~----~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
++..... +.+..+ +....+. +.-.++.+.|..++.++.+..|++...+..+..+....+
T Consensus 425 l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 425 LYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5554433 222222 2222222 445889999999999999999999988888777766554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.057 Score=49.15 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHH
Q 010031 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414 (520)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 414 (520)
+..+.-+...|+...|.++-.+..-|+-..|...+.+++..++|++-..+... +-++.-|..++.+|...|+..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 34445555667777777777776667777777777777777777765554322 112355666667777777777
Q ss_pred HHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
+|..++.++. +..-+..|.++|++.+|.+.--+..
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 7776665532 1335566677777777766655543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0018 Score=58.38 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHH----CCCCCCHH--HHHHHHHHHHcc-CcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhc
Q 010031 377 RYEQAIQYFKKMMY----SGTEPDGT--VFLAILTACWYS-GQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSR 445 (520)
Q Consensus 377 ~~~~a~~~~~~~~~----~~~~p~~~--~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 445 (520)
++++|...+++..+ .| .|+.. .+..+...|... |++++|++.|++...-+..... ..++..++..+.+
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 66666666665543 22 22222 556666677777 8999999999888653221112 2456678888999
Q ss_pred cCChHHHHHHHhhCCC----CC----CHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 446 VGQVDKALNFINKMPE----TP----DFV-IWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 446 ~g~~~~A~~~~~~~~~----~~----~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
.|++++|+++|+++.. .+ +.. .+...+-++...||...|.+.+++..+.+|.-
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 9999999999987542 11 111 23333445677899999999999999888843
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.015 Score=53.34 Aligned_cols=167 Identities=16% Similarity=0.087 Sum_probs=96.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC-------ChhHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010031 336 ALVDMYAKCGNIEAASLVFGETKEK-------DLLTWTAMIWGLAI---HGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405 (520)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 405 (520)
.++-.|....+++...++.+.+... ....-...+-++.+ .|+.++|+.++..+....-.+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566666666666666655542 11222233445555 6778888888877655555667777766665
Q ss_pred HHHc---------cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC-hH---HHHHHH---hh-CCC------C
Q 010031 406 ACWY---------SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ-VD---KALNFI---NK-MPE------T 462 (520)
Q Consensus 406 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~-~~~------~ 462 (520)
.|-. ....++|+..|.+.-+ +.|+...=-.++..+.-.|. .+ +..++. .. ... .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5432 2246778877777543 45554322223333333332 11 222222 11 111 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 463 PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 463 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
.+-.-+.+++.++.-.|+.++|.+.+++++++.|.....-..+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~ 345 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTL 345 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHH
Confidence 4455667888889999999999999999999988766544443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.015 Score=46.52 Aligned_cols=126 Identities=13% Similarity=0.055 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 440 (520)
.+.--..|..++...|++.+|...|++...--+.-|......+.++....++...|...++.+.+...-..++.....+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 33344456667777777777777777776644445666777777777777777777777777664322122234455677
Q ss_pred HHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHH
Q 010031 441 NLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAKI 486 (520)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 486 (520)
+.|...|++.+|...|+.... -|++..-......+.+.|+.++|..
T Consensus 168 R~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 777777777777777777654 3444433333333455565544443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0015 Score=60.86 Aligned_cols=89 Identities=9% Similarity=0.006 Sum_probs=60.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccC
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (520)
...+...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..++++.... +.+...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 34455667777777777777773 443 3466666777777778888877777776421 234556777777777778
Q ss_pred ChHHHHHHHhhCCC
Q 010031 448 QVDKALNFINKMPE 461 (520)
Q Consensus 448 ~~~~A~~~~~~~~~ 461 (520)
++++|+..|++...
T Consensus 85 ~~~eA~~~~~~al~ 98 (356)
T PLN03088 85 EYQTAKAALEKGAS 98 (356)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888777777654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00017 Score=49.07 Aligned_cols=50 Identities=14% Similarity=0.012 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 464 DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 464 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
++.+|..+...+...|++++|+..|+++++++|+++.++..+|.++.+.|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~ 51 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG 51 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999999999999999999999998
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.12 Score=50.44 Aligned_cols=228 Identities=11% Similarity=0.028 Sum_probs=139.8
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCCh
Q 010031 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHF 110 (520)
Q Consensus 31 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 110 (520)
+.+.-.++.+|++.....-+-+ +.. -.+...-.+-+.+| -|++++|.+++-++.++|. .|..+.+.|++
T Consensus 708 l~tAE~AFVrc~dY~Gik~vkr-l~~---i~s~~~q~aei~~~--~g~feeaek~yld~drrDL-----Aielr~klgDw 776 (1189)
T KOG2041|consen 708 LDTAEHAFVRCGDYAGIKLVKR-LRT---IHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL-----AIELRKKLGDW 776 (1189)
T ss_pred hhhHhhhhhhhccccchhHHHH-hhh---hhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-----hHHHHHhhhhH
Confidence 3445567778888765422111 110 01112222333333 4899999999988887765 46667777888
Q ss_pred hHHHHHHHHhhhCCC--CCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhc
Q 010031 111 QSCISHFVFMLRLSV--RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188 (520)
Q Consensus 111 ~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 188 (520)
-...++++.--. +. ..-...++.+...++....|++|.+.+..-.. -...+.++.+..++++-+.+.+
T Consensus 777 frV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~ 846 (1189)
T KOG2041|consen 777 FRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLAR 846 (1189)
T ss_pred HHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHH
Confidence 777776653211 11 01123677777788888888888888765321 1235677777777777766666
Q ss_pred cCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHH---
Q 010031 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT--- 265 (520)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 265 (520)
.+.+ +....-.+.+.+...|.-++|.+.|-+...|. +.+..|...+++.+|.++-+...-|.+.+.-
T Consensus 847 ~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~ 916 (1189)
T KOG2041|consen 847 TLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQ 916 (1189)
T ss_pred hcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 6543 45666777888888888888888776665543 3345566778888888887776655433211
Q ss_pred -----------HHHHHHHhCCChhHHHHHHHHHHH
Q 010031 266 -----------AMINGFSQNGEAEKALAMFFQMLD 289 (520)
Q Consensus 266 -----------~l~~~~~~~~~~~~a~~~~~~m~~ 289 (520)
--|..+.+.|++-+|-+++.+|.+
T Consensus 917 aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 917 AAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 123344556666666666666654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.075 Score=48.03 Aligned_cols=241 Identities=15% Similarity=0.073 Sum_probs=122.3
Q ss_pred cCChhHHHHHHhhCCC-CCHH--HHHHHHHHHHhcCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHHHHH
Q 010031 212 IGYLRKAVELFGMMPK-KNVA--SWVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFF 285 (520)
Q Consensus 212 ~g~~~~a~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~ 285 (520)
.|+++.|.+-|+.|.. |... -...|.-..-+.|+.+.|...-+.....- ...+...+...|..|+|+.|+++++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 5666666666666654 2211 11222222234566666655555443321 2355666677777777777777776
Q ss_pred HHHHcC-CCCCHH--HHHHHHHHhh---ccCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHhcCCHHHHHHHHhcCC
Q 010031 286 QMLDAG-VRANDF--TVVSALSACA---KVGALEAGVRVHNYISCNDFGLKGAI-GTALVDMYAKCGNIEAASLVFGETK 358 (520)
Q Consensus 286 ~m~~~~-~~p~~~--~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~ 358 (520)
.-.... +.++.. .-..++.+-. -..+...|...-.+..+. .|+..- ...-..++.+.|+..++-.+++.+-
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 654432 233321 1112222111 112334444444333332 233221 1223456677777777777777665
Q ss_pred C--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChh
Q 010031 359 E--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434 (520)
Q Consensus 359 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 434 (520)
+ |++..+. +....+.|+ .+..-+++..+ ..++||.. +...+..+....|++..|..--+.... ..|...
T Consensus 291 K~ePHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres 363 (531)
T COG3898 291 KAEPHPDIAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRES 363 (531)
T ss_pred hcCCChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhh
Confidence 5 3333222 222334444 33333333322 12455544 666666777777887777766666543 367777
Q ss_pred HHHHHHHHHhc-cCChHHHHHHHhhCCC
Q 010031 435 HHTVVVNLLSR-VGQVDKALNFINKMPE 461 (520)
Q Consensus 435 ~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 461 (520)
.|..|.+.-.. .|+-.++...+-+...
T Consensus 364 ~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 364 AYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 77766666543 4777778777776554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00047 Score=56.77 Aligned_cols=101 Identities=12% Similarity=-0.042 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 010031 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD----FVIWGALFCACRTHKDTKIAKIA 487 (520)
Q Consensus 413 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~ 487 (520)
+..+...+..+.+..+..-....|..++..+...|++++|+..+++... .|+ ..+|..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444444432222223355677888889999999999999998753 222 34788888999999999999999
Q ss_pred HHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 488 LQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 488 ~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
+++++++.|..+..+..++.++...|
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 99999999999999999999999443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00026 Score=55.80 Aligned_cols=93 Identities=11% Similarity=-0.042 Sum_probs=60.6
Q ss_pred HHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHH
Q 010031 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP--ETPDFVIWGALFCACRTHKDTKI 483 (520)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 483 (520)
-+...|++++|..+|+-+.. .+ .-+...+..|..++-..+++++|+..+.... ...|+........++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~-~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCI-YD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHH-hC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 34567788888887777663 21 2344556677777777777888877776532 23445555666677777788888
Q ss_pred HHHHHHHHhcCCCCCcch
Q 010031 484 AKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 484 A~~~~~~~~~~~p~~~~~ 501 (520)
|+..|+.+++ .|.+...
T Consensus 124 A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 124 ARQCFELVNE-RTEDESL 140 (165)
T ss_pred HHHHHHHHHh-CcchHHH
Confidence 8887777776 4554443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00069 Score=45.83 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=30.2
Q ss_pred ccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHH
Q 010031 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFV 466 (520)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 466 (520)
..|++++|+++++++.... +-+...+..++.+|.+.|++++|.++++++.. .|+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 3556666666666655422 22444555566666666666666666666554 34433
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.036 Score=44.48 Aligned_cols=98 Identities=16% Similarity=0.099 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHHH
Q 010031 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDLLTWTA 367 (520)
Q Consensus 293 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 367 (520)
.|+...-..+..+....|+..+|...|.+...--+..|..+.-.+.++....+++..|...++++.+ ..+.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444444444555555555555555444332333444444444444444444444444443332 11222333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
+...+...|.+.+|+.-|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 34444444444444444444444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0018 Score=56.31 Aligned_cols=125 Identities=16% Similarity=0.028 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccC---ChHHHH
Q 010031 378 YEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG---QVDKAL 453 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~ 453 (520)
.+....-++.-... .| |...|..|..+|...|+++.|...|....+-. ++++..+..+..++.... ...++.
T Consensus 138 ~~~l~a~Le~~L~~--nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 138 MEALIARLETHLQQ--NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred HHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 44444444444443 45 55699999999999999999999999988643 455667777777765433 466889
Q ss_pred HHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHH
Q 010031 454 NFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 454 ~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 506 (520)
.+|+++.. +| |......|...+...|++.+|...|+.+++..|.+..-...+-
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 99999775 44 5566777777899999999999999999998776554444433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.006 Score=46.22 Aligned_cols=93 Identities=15% Similarity=0.285 Sum_probs=66.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHh
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLS 444 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 444 (520)
+..++-..|+.++|+.+|++....|...... .+..+...+...|++++|..+++.....++-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 4556677899999999999998888765532 677777888889999999999988875432111 1222233455677
Q ss_pred ccCChHHHHHHHhhCC
Q 010031 445 RVGQVDKALNFINKMP 460 (520)
Q Consensus 445 ~~g~~~~A~~~~~~~~ 460 (520)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8899999888876544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=8.6e-05 Score=41.75 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=29.9
Q ss_pred HHHHHhcCCCCCcchhHHHHhhhhhccCCCcccC
Q 010031 487 ALQSSCSLNLSIPQAMSYCQTFMQQKGDGRTWRE 520 (520)
Q Consensus 487 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~~~e 520 (520)
.++++++++|+++.++..+|.+|...|+.+..++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999876543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0026 Score=57.36 Aligned_cols=148 Identities=12% Similarity=0.077 Sum_probs=106.5
Q ss_pred hHHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCcHHHHHHHHHHcHhhcCCCCChhH----
Q 010031 363 LTWTAM-IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT--ACWYSGQVKLALNFFDSMRFDYFIEPSVKH---- 435 (520)
Q Consensus 363 ~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---- 435 (520)
.+|..+ ..++.-.|++++|..+--...+. .++. .+..+++ ++...++.+.+...|++... +.|+...
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhH
Confidence 344444 34566788999998887777663 3322 3333343 34457888999999988764 3455321
Q ss_pred ---------HHHHHHHHhccCChHHHHHHHhhCCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 436 ---------HTVVVNLLSRVGQVDKALNFINKMPE------TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 436 ---------~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
+..=.+-..+.|++.+|.+.+.+... +|+...|.....+..+.|+.++|+...+++++++|.-..
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 12223445688999999999998764 355667777777888999999999999999999999999
Q ss_pred hhHHHHhhhhhccCCC
Q 010031 501 AMSYCQTFMQQKGDGR 516 (520)
Q Consensus 501 ~~~~l~~~~~~~g~~~ 516 (520)
++...+.++...++.+
T Consensus 323 all~ra~c~l~le~~e 338 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWE 338 (486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888776643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0046 Score=55.50 Aligned_cols=126 Identities=13% Similarity=0.072 Sum_probs=61.5
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA-CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (520)
+|..+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555666666666666666666665432 1222223222222 22234455566666665543 334555555555555
Q ss_pred HhcCCHHHHHHHHhcCCC--C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 342 AKCGNIEAASLVFGETKE--K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
...++.+.|+.+|+.... + ....|...+..-.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555556566555555444 1 112455555555555555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.037 Score=47.08 Aligned_cols=134 Identities=12% Similarity=0.098 Sum_probs=88.5
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHH-----HH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT-----AL 337 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l 337 (520)
..+.++..+...|.+.-....+++..+...+.++.....+.+...+.|+.+.|...++...+..-..+...++ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4456677777778888888888888887666677777778888888888888888888776543333333333 33
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 010031 338 VDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398 (520)
Q Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 398 (520)
...|.-.+++..|...++++... ++..-|.-.-+..-.|+..+|++..+.|.+. .|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccc
Confidence 34455667777777777776652 3444444444444567777777777777773 44433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.017 Score=50.50 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=72.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcc---CcHHHHHHHHHHcHhhcCCCCChhHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYS---GQVKLALNFFDSMRFDYFIEPSVKHH 436 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~ 436 (520)
|...|-.|..+|...|+.+.|..-|.+..+ +.|+ ...+..+..++... .+..++..+++++.+. -+-++...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHH
Confidence 667888888888888888888888888877 3443 33555555554332 2456778888887742 13345566
Q ss_pred HHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHH
Q 010031 437 TVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALF 472 (520)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~ 472 (520)
..|...+...|++.+|...|+.|.. -|....+..++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 6777788888888888888888775 23333444444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.11 Score=45.52 Aligned_cols=64 Identities=11% Similarity=-0.022 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH---HHHHHHhhccCChHHHHHHHHHHHHcCCC
Q 010031 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV---VSALSACAKVGALEAGVRVHNYISCNDFG 328 (520)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (520)
+-.....+...|++++|.+.|+++...-..+ .... ..+..++.+.++++.|...+++..+..+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 3344555667788888888888887753221 2222 34556677888888888888887766443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.011 Score=44.78 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=53.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCC--CChhHHHHHHHHH
Q 010031 266 AMINGFSQNGEAEKALAMFFQMLDAGVRAN--DFTVVSALSACAKVGALEAGVRVHNYISCNDFG--LKGAIGTALVDMY 341 (520)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 341 (520)
.+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++........ .+......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345566777888888888888887775544 234555666677778888888877777654211 0112222233344
Q ss_pred HhcCCHHHHHHHHh
Q 010031 342 AKCGNIEAASLVFG 355 (520)
Q Consensus 342 ~~~~~~~~a~~~~~ 355 (520)
...|+.++|.+.+-
T Consensus 86 ~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 86 YNLGRPKEALEWLL 99 (120)
T ss_pred HHCCCHHHHHHHHH
Confidence 55566655555543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.017 Score=49.12 Aligned_cols=46 Identities=15% Similarity=0.005 Sum_probs=31.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCCcc---hhHHHHhhhhhccCCC
Q 010031 471 LFCACRTHKDTKIAKIALQSSCSLNLSIPQ---AMSYCQTFMQQKGDGR 516 (520)
Q Consensus 471 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~ 516 (520)
+..-|.+.|.+..|..-++.+++..|+.+. ++..++..|.+.|...
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 445577888888888888888888887664 4566677777776643
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.028 Score=55.00 Aligned_cols=35 Identities=9% Similarity=0.015 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHhhcc-----CChHHHHHHHHHHHHcC
Q 010031 292 VRANDFTVVSALSACAKV-----GALEAGVRVHNYISCND 326 (520)
Q Consensus 292 ~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~ 326 (520)
.+.+...|...+++.... ++...|..+|++..+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld 372 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE 372 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence 345556666666654321 23556666666666554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.023 Score=49.65 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=28.3
Q ss_pred HhcCCHHHHHHHHhcCCCCC--c----ccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010031 241 MRKGDLKKAGELFEQMPEKG--V----VSWTAMINGFSQNGEAEKALAMFFQMLDA 290 (520)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~--~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 290 (520)
...|++++|.+.|+++.... . ...-.++.++.+.+++++|...+++..+.
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34455555555555544321 1 11234556677777788888888777765
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.037 Score=53.14 Aligned_cols=258 Identities=15% Similarity=0.123 Sum_probs=144.7
Q ss_pred CCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCC
Q 010031 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275 (520)
Q Consensus 196 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 275 (520)
.+....+.+-+..|...|.+++|.++----. ...-|.-|.......=+++-|.+.|.+.. .-
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVR----------------dl 614 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGV--TDTDWRELAMEALEALDFETARKAYIRVR----------------DL 614 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccce--ecchHHHHHHHHHhhhhhHHHHHHHHHHh----------------cc
Confidence 3444555555666777787777765422111 11223333333333333444443333322 12
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 010031 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355 (520)
Q Consensus 276 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 355 (520)
.+-+.+.-++++++.|-.|+.... ...++-.|++.+|.++|.+ .|.+ +..+.+|.....++.|.+++.
T Consensus 615 ~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~ 682 (1081)
T KOG1538|consen 615 RYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLG 682 (1081)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhh
Confidence 244555567778888877876543 3445667888888888764 3322 234455555556666666654
Q ss_pred cCCCC--------------ChhHHHHHHHHHHHcCCHHHHHHHHHH------HHHCCCCC---CHHHHHHHHHHHHccCc
Q 010031 356 ETKEK--------------DLLTWTAMIWGLAIHGRYEQAIQYFKK------MMYSGTEP---DGTVFLAILTACWYSGQ 412 (520)
Q Consensus 356 ~~~~~--------------~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~~p---~~~~~~~l~~~~~~~g~ 412 (520)
..... ++.--.+....+...|+.++|..+.-+ +.+-+-+. +..+...+...+.+...
T Consensus 683 ~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~ 762 (1081)
T KOG1538|consen 683 SGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDS 762 (1081)
T ss_pred cCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccc
Confidence 43220 111111233444556666666554321 12211122 23355555555566777
Q ss_pred HHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHH-----------HHHHHHHHHHHcCC
Q 010031 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFV-----------IWGALFCACRTHKD 480 (520)
Q Consensus 413 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-----------~~~~l~~~~~~~g~ 480 (520)
+.-|-++|.+|-. ...++......+++.+|..+-++.++ .|+.. -+...-.+|.+.|+
T Consensus 763 ~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 763 PGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred cchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 7888888888752 13467778889999999999998876 34432 23344467889999
Q ss_pred HHHHHHHHHHHhc
Q 010031 481 TKIAKIALQSSCS 493 (520)
Q Consensus 481 ~~~A~~~~~~~~~ 493 (520)
..+|.++++++-.
T Consensus 833 ~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 833 QREAVQVLEQLTN 845 (1081)
T ss_pred hHHHHHHHHHhhh
Confidence 9999999988753
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.32 Score=47.99 Aligned_cols=110 Identities=19% Similarity=0.087 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (520)
+.+--+.-+...|+..+|.++-.+.+ -||-..|..-+.+++..+++++-.++-+..+ ++.-|.-++.++
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCchhHHHHH
Confidence 34445566677888888888877764 5788888888899999999988777655543 245677788999
Q ss_pred hccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010031 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (520)
.+.|+.++|.+++.+...-+ -...+|.+.|++.+|.+..-+
T Consensus 755 ~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 99999999999998876422 466777778888777765433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.035 Score=47.19 Aligned_cols=132 Identities=11% Similarity=0.026 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcC----CCCChhHHHHHHH
Q 010031 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF----IEPSVKHHTVVVN 441 (520)
Q Consensus 366 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~ 441 (520)
+.++..+.-.|.+.-....+++.++...+.+......|.+.-.+.||.+.|..+|++..+..+ +.-...+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444444555555555566655543333444555555555556666666666665443221 1111112222233
Q ss_pred HHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 010031 442 LLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 497 (520)
.|.-++++.+|...+.+++. +.++...+.-.-+..-.|+...|++.++.+++..|.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 34444555555555555544 122333333333344455555666666666655553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0005 Score=48.07 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhccCChHHHHHHHhhCCC-----C---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 434 KHHTVVVNLLSRVGQVDKALNFINKMPE-----T---PD-FVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
.+++.+..+|.+.|++++|+..+++... . |+ ..++..+..++...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566777777777777777777766442 1 22 345667777788888888888888887654
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0061 Score=50.41 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=62.4
Q ss_pred CCcccHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc----------------CChHHHHH
Q 010031 259 KGVVSWTAMINGFSQ-----NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV----------------GALEAGVR 317 (520)
Q Consensus 259 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------------~~~~~a~~ 317 (520)
++-.+|..+++.|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+-+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 344455555555543 356666667777888888888888888888877542 23556788
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 010031 318 VHNYISCNDFGLKGAIGTALVDMYAKCGN 346 (520)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (520)
++++|...|+-||..++..+++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888888765543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0056 Score=55.43 Aligned_cols=119 Identities=13% Similarity=-0.012 Sum_probs=61.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccC
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (520)
-...+.+.|++..|..-|++.+.. -.. .+.-+.++.... . ..-..+++.+..+|.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~~-----------~~~~~~ee~~~~-~--------~~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LEY-----------RRSFDEEEQKKA-E--------ALKLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hhc-----------cccCCHHHHHHH-H--------HHHHHHhhHHHHHHHhhh
Confidence 356777888888888888886652 100 000000111000 0 011224455555566666
Q ss_pred ChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 448 QVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 448 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
++.+|++..++... ++|.....--..++...|+++.|+..|+++++++|+|..+-..+..+
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 66666666655443 34444444455555666666666666666666666665554444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.07 Score=51.40 Aligned_cols=103 Identities=9% Similarity=0.011 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhh
Q 010031 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426 (520)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 426 (520)
.+.+.++-+++...+..+...+...+.+...+.-|-++|++|-.. ..++......+++++|..+-++.-+
T Consensus 732 ~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe- 801 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE- 801 (1081)
T ss_pred HHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc-
Confidence 333444444444444444444555555555666666666665431 2344445566777777766665532
Q ss_pred cCCCCChhH-----------HHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 427 YFIEPSVKH-----------HTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 427 ~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
+.||+.. |...-.+|.++|+..+|..+++++..
T Consensus 802 --~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 802 --FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred --ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 3444321 12223466777888888888877653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0039 Score=41.61 Aligned_cols=55 Identities=20% Similarity=0.394 Sum_probs=31.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
...+...|++++|...|+++++. .|+.. .+..+..++...|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566666666666666653 34333 555555566666666666666666553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0095 Score=52.49 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-hhHHHHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVV 439 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 439 (520)
|...+..+.+.|++++|...|+.+++. .|+. ..+..+...|...|++++|...|+.+...+.-.|. ...+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444444445567788888888887773 4443 35666777777788888888888887754422222 3344456
Q ss_pred HHHHhccCChHHHHHHHhhCCC
Q 010031 440 VNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
+.++...|+.++|.++++++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6677777888888888877654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.013 Score=48.47 Aligned_cols=88 Identities=23% Similarity=0.266 Sum_probs=69.5
Q ss_pred CChhHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----------------CcHHHHHH
Q 010031 360 KDLLTWTAMIWGLAI-----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS----------------GQVKLALN 418 (520)
Q Consensus 360 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~a~~ 418 (520)
++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 455666666666654 466777777888888989999999999999876542 25577899
Q ss_pred HHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
++++|. .+|+-||..++..+++.+++.+.
T Consensus 125 lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 999998 68999999999999999987764
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0031 Score=56.82 Aligned_cols=276 Identities=12% Similarity=0.052 Sum_probs=144.2
Q ss_pred HHHHhCCChhHHHHHHHHhhhCCCCCCcc----cHHHHHHHHhccCChhhHHHHHHHHH--Hh--CC-CCChhHHHHHHH
Q 010031 102 RGLAENSHFQSCISHFVFMLRLSVRPNRL----TYPFVSKSVASLSLLSLGRGLHCLIV--KS--GV-EYDAFVRVHLAD 172 (520)
Q Consensus 102 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~--~~--~~-~~~~~~~~~l~~ 172 (520)
.-+++.|+....+.+|+...+-|- -|.. .|..|-.+|.-.+++++|.+.+..=+ .. |- .-.......|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 357888888888888888888653 2332 34444555555667777766644211 11 10 011223333444
Q ss_pred HHHhcCChhHHHHHhccCC----CCCC-CCCchhHHHHHHHHHhcCChhHHHHHHhhCCCC-CHHHHHHHHHHHHhcCCH
Q 010031 173 MYVQLGKTRGAFKVFDETP----EKNK-SESVLLWNVLINGCSKIGYLRKAVELFGMMPKK-NVASWVSLIDGFMRKGDL 246 (520)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 246 (520)
.+--.|.+++|.....+-+ +.|- ......+..+...|...|+.-.. ..| +...++.=+ ...+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~-------~~pee~g~f~~ev-----~~al 171 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL-------EAPEEKGAFNAEV-----TSAL 171 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC-------CChhhcccccHHH-----HHHH
Confidence 4445555666554432211 1110 11122333333333333321000 000 000000000 0012
Q ss_pred HHHHHHHhc-------CCCC--CcccHHHHHHHHHhCCChhHHHHHHHHHH----HcCCC-CCHHHHHHHHHHhhccCCh
Q 010031 247 KKAGELFEQ-------MPEK--GVVSWTAMINGFSQNGEAEKALAMFFQML----DAGVR-ANDFTVVSALSACAKVGAL 312 (520)
Q Consensus 247 ~~a~~~~~~-------~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~-p~~~~~~~l~~~~~~~~~~ 312 (520)
+.|.++|.+ +..+ ....|..|...|.-.|+++.|+..-+.-+ +-|-+ .....+..+..++.-.|++
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f 251 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF 251 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc
Confidence 223333322 1111 13466777777777788888876654422 22322 1234566677777888888
Q ss_pred HHHHHHHHHHH----HcCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CChhHHHHHHHHHHHcCCH
Q 010031 313 EAGVRVHNYIS----CNDF-GLKGAIGTALVDMYAKCGNIEAASLVFGETKE---------KDLLTWTAMIWGLAIHGRY 378 (520)
Q Consensus 313 ~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~ 378 (520)
+.|.+.|+... +.|- ......+-+|.+.|.-..++++|+.++.+-.. -....|-+|..+|...|..
T Consensus 252 e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 252 ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEH 331 (639)
T ss_pred HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhH
Confidence 88888887643 2232 23445566788888888888888887765332 1335677788888888888
Q ss_pred HHHHHHHHHHHH
Q 010031 379 EQAIQYFKKMMY 390 (520)
Q Consensus 379 ~~a~~~~~~~~~ 390 (520)
++|+.+.+.-.+
T Consensus 332 ~kAl~fae~hl~ 343 (639)
T KOG1130|consen 332 RKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHH
Confidence 888877766544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.56 Score=46.44 Aligned_cols=87 Identities=14% Similarity=0.113 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010031 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRT 477 (520)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 477 (520)
.+.+--+.-+...|+..+|.++-.+.+ -||-..|..-+.+++..+++++-.++-+..+. +.-|.-++.+|.+
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEACLK 756 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHHHh
Confidence 355556666778899999999888775 58888999999999999999998888777653 5667788899999
Q ss_pred cCCHHHHHHHHHHHh
Q 010031 478 HKDTKIAKIALQSSC 492 (520)
Q Consensus 478 ~g~~~~A~~~~~~~~ 492 (520)
.|+.++|..++-+.-
T Consensus 757 ~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVG 771 (829)
T ss_pred cccHHHHhhhhhccC
Confidence 999999999887763
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0094 Score=51.29 Aligned_cols=103 Identities=17% Similarity=0.028 Sum_probs=75.9
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC---hhHHHHHHHHHhccCChHHHHHHHhhCCC-----CCCHHHHHH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSRVGQVDKALNFINKMPE-----TPDFVIWGA 470 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 470 (520)
.|+.-+. +...|++..|...|....+.+ +-+ ...+-.|.+++...|++++|..+|..+.. +.-+..+.-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4655554 346677888888888887643 222 23445588899999999999988887654 123456677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHH
Q 010031 471 LFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504 (520)
Q Consensus 471 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 504 (520)
+.....+.|+.++|...|+++.+.+|+.+.+...
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 7777888999999999999999999988776544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.003 Score=35.52 Aligned_cols=33 Identities=15% Similarity=-0.012 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 466 VIWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467788899999999999999999999999986
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0024 Score=35.96 Aligned_cols=33 Identities=18% Similarity=-0.094 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 466 VIWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
.+|..+..++...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 578889999999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.072 Score=49.94 Aligned_cols=105 Identities=12% Similarity=0.172 Sum_probs=75.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHH--HHHHHHHH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFV--IWGALFCA 474 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~--~~~~l~~~ 474 (520)
+=..+..++.+.|+.++|++.++++.+.........+...|+.+|...+.+.++..++.+-.. -|... .|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 334566777789999999999999986553223345778899999999999999999988653 23333 45554433
Q ss_pred HHHcCC---------------HHHHHHHHHHHhcCCCCCcchhH
Q 010031 475 CRTHKD---------------TKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 475 ~~~~g~---------------~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
++..|+ -..|.+.++++++.||.-|..+.
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 333333 23477899999999999887654
|
The molecular function of this protein is uncertain. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.22 Score=42.34 Aligned_cols=61 Identities=16% Similarity=0.064 Sum_probs=38.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcC
Q 010031 266 AMINGFSQNGEAEKALAMFFQMLDAGV--RANDFTVVSALSACAKVGALEAGVRVHNYISCND 326 (520)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 326 (520)
.....+...|++.+|...|+.+...-. +--......++.++.+.|+++.|...++...+.-
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 344556777888888888888776521 1122344556667777788888888887776654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.46 Score=44.14 Aligned_cols=352 Identities=8% Similarity=0.024 Sum_probs=183.8
Q ss_pred hcCCChHHHHHHhcccCC------------------CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCC----CCCccc
Q 010031 74 SLHKSIDYALSIFDHFTP------------------KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV----RPNRLT 131 (520)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~------------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~----~p~~~~ 131 (520)
-+.+.+++|++.+..... ++-..=+..+..++..|++.++..++++|...=. .-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 467899999988864322 1112234556788999999999999999886433 367888
Q ss_pred HHHHHHHHhccC--------Ch-------hhHHHHHHHHHHh------CCCCChhHHHHHHHHHHhcC--ChhHHHHHhc
Q 010031 132 YPFVSKSVASLS--------LL-------SLGRGLHCLIVKS------GVEYDAFVRVHLADMYVQLG--KTRGAFKVFD 188 (520)
Q Consensus 132 ~~~ll~~~~~~~--------~~-------~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~ 188 (520)
|+.++-.+++.= .. +.+.-...++... .+.|.......++....-.. +..--.++++
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 888655554321 11 1122222222221 12233333333333322211 1111222222
Q ss_pred cCCCCCCCCCchh-HHHHHHHHHhcCChhHHHHHHhhCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHhcCC--
Q 010031 189 ETPEKNKSESVLL-WNVLINGCSKIGYLRKAVELFGMMPK--------KNVASWVSLIDGFMRKGDLKKAGELFEQMP-- 257 (520)
Q Consensus 189 ~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 257 (520)
.....-+.|+-.. ...+...+.+ +.+++..+.+.+.. .=..++..++....+.++...|...+.-+.
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 2222223343222 2223333333 44444444433332 234577888888889999888877766543
Q ss_pred CCCc-------ccHHHHHHHHHhC----CChhHHHHHHHHHHHcCCCCCHH-HHHHHHHH---hhccC-ChHHHHHHHHH
Q 010031 258 EKGV-------VSWTAMINGFSQN----GEAEKALAMFFQMLDAGVRANDF-TVVSALSA---CAKVG-ALEAGVRVHNY 321 (520)
Q Consensus 258 ~~~~-------~~~~~l~~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~---~~~~~-~~~~a~~~~~~ 321 (520)
+|+. .+-..+.+..+.. -+...=+.+|+......+ |.. ....++.+ +=+.| .-++|..+++.
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 2321 1222233333311 112233445555544432 221 11222222 22334 47888888888
Q ss_pred HHHcCCCCChhHHHHH----HHHHHhc---CCHHHHHHHH---hcCCC-----CChhHHHHHHHH--HHHcCCHHHHHHH
Q 010031 322 ISCNDFGLKGAIGTAL----VDMYAKC---GNIEAASLVF---GETKE-----KDLLTWTAMIWG--LAIHGRYEQAIQY 384 (520)
Q Consensus 322 ~~~~~~~~~~~~~~~l----~~~~~~~---~~~~~a~~~~---~~~~~-----~~~~~~~~l~~~--~~~~~~~~~a~~~ 384 (520)
+.+.- ..|...-|.+ -..|.+. ..+..-..+- ++..- .+...-|.|..+ +..+|++.++.-.
T Consensus 406 il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 406 ILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 87642 2233332222 2222221 1122222211 11111 233345555544 5678999999877
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHH
Q 010031 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438 (520)
Q Consensus 385 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 438 (520)
-.-+.+ +.|+..+|..+.-+.....++++|..++..+ ||+..++++
T Consensus 485 s~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L------P~n~~~~ds 530 (549)
T PF07079_consen 485 SSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL------PPNERMRDS 530 (549)
T ss_pred HHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC------CCchhhHHH
Confidence 777776 8999999999988889999999999998775 677666655
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.026 Score=43.24 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH
Q 010031 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (520)
Q Consensus 392 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (520)
...|+..+..+++.+|+..|++..|+++++...+.++++.+...|..|++-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356777888888888888888888888888887777777777777776643
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.54 Score=43.61 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC--CCcchHHHHHH
Q 010031 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP--KNLHIFNVLIR 102 (520)
Q Consensus 27 ~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~ 102 (520)
+..++..+++-|...+..+..+++++++.+. .+.-+.++..-++.-....++.....+|.+... -++..|...+.
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~ 117 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLE 117 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHH
Confidence 4445566666666666666666666666432 122334444455544445566666666654432 34455555544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.041 Score=42.61 Aligned_cols=116 Identities=16% Similarity=0.081 Sum_probs=55.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 371 GLAIHGRYEQAIQYFKKMMYSGTEP--DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 371 ~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
...+.|++++|.+.|+.+...-... ....-..++.++.+.|++++|...+++..+.+.-.|++. |-..+.+++.-..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~~~~~ 97 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHHHHHH
Confidence 3344566666666666655531110 112444555556666666666666666554333333321 2222333222111
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchh
Q 010031 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502 (520)
Q Consensus 449 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 502 (520)
.+..+.-+-. .+-| .+....|...|+++++..|+++-+-
T Consensus 98 ~~~~~~~~~~--~drD-------------~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 98 DEGSLQSFFR--SDRD-------------PTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred hhhHHhhhcc--cccC-------------cHHHHHHHHHHHHHHHHCcCChhHH
Confidence 1111111110 0111 2235689999999999999987554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.09 Score=41.80 Aligned_cols=94 Identities=12% Similarity=0.157 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhc
Q 010031 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445 (520)
Q Consensus 367 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (520)
....-+...|++++|..+|+-+.-. .| +..-+..|..++-..+++++|+..|..... .. .-|+..+-....+|..
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHH
Confidence 3444556789999999999888773 33 344566677777778899999998887753 21 2334444557888889
Q ss_pred cCChHHHHHHHhhCCCCCC
Q 010031 446 VGQVDKALNFINKMPETPD 464 (520)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~ 464 (520)
.|+.+.|+..|+....+|.
T Consensus 118 l~~~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 118 MRKAAKARQCFELVNERTE 136 (165)
T ss_pred hCCHHHHHHHHHHHHhCcc
Confidence 9999999999888776554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0055 Score=45.75 Aligned_cols=90 Identities=17% Similarity=0.088 Sum_probs=62.7
Q ss_pred HHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHH----HHHHHHHHHHHcC
Q 010031 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFV----IWGALFCACRTHK 479 (520)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~----~~~~l~~~~~~~g 479 (520)
+....|+++.|++.|.+...- .+.....||.-..++.-.|+.++|++-+++..+ .+... .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 566788888888888887632 345667888888888888888888888887654 12211 2222333477788
Q ss_pred CHHHHHHHHHHHhcCCCC
Q 010031 480 DTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 480 ~~~~A~~~~~~~~~~~p~ 497 (520)
+.+.|..-|+.+-++...
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888888888776554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0086 Score=55.63 Aligned_cols=60 Identities=15% Similarity=0.065 Sum_probs=37.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh----hHHHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV----KHHTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
.++.+..+|...|++++|+..|++..+ +.|+. ..|..+..+|...|++++|++.++++..
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666666553 24443 2356666666666666666666666553
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.013 Score=40.17 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=31.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 370 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
..+.+.+++++|.++++++.. ..|+.. .+......+...|++++|.+.++...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345556666666666666666 334333 455555566666666666666666654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.04 Score=50.01 Aligned_cols=153 Identities=12% Similarity=0.093 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHh---hcC-CCCChh
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKM----MYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRF---DYF-IEPSVK 434 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~-~~~~~~ 434 (520)
.|..|...|.-.|+++.|+..-+.- .+-|-+. ....+..+..++.-.|+++.|.+.|+.... ..| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 5666666677788999998665432 2223222 223788888888889999999999887542 111 112234
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhCCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CCC-Ccc
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKMPE--------TPDFVIWGALFCACRTHKDTKIAKIALQSSCSL-----NLS-IPQ 500 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~-~~~ 500 (520)
+-.+|...|.-..++++|+.++.+=.. .-....+.+|..++...|..++|+...+..+++ +|. ..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 445788888888889999988876321 134567888999999999999999998888753 222 334
Q ss_pred hhHHHHhhhhhccCCC
Q 010031 501 AMSYCQTFMQQKGDGR 516 (520)
Q Consensus 501 ~~~~l~~~~~~~g~~~ 516 (520)
+...+.......|.++
T Consensus 357 ar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 357 ARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhHHHHHHhCCCc
Confidence 5566666666666644
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.18 Score=46.39 Aligned_cols=175 Identities=14% Similarity=0.118 Sum_probs=85.3
Q ss_pred HHHHHHhcCCChHHHHHHhcccCCC-C------cchHHHHHHHHHh---CCChhHHHHHHHHhhhCCCCCCcccHHHHHH
Q 010031 68 QLISSASLHKSIDYALSIFDHFTPK-N------LHIFNVLIRGLAE---NSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137 (520)
Q Consensus 68 ~l~~~~~~~~~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 137 (520)
.++-.|....+++..+++++.+... + ...-....-++-+ .|+.++|++++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566777777777777776542 1 1111122334445 6777777777777555555566677776666
Q ss_pred HHhcc---------CChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHH
Q 010031 138 SVASL---------SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208 (520)
Q Consensus 138 ~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 208 (520)
.|... ...+.|...+.+.-+ +.||...--.++..+...|.......-++++ ...++ ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i--------~~~l~---~l 292 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKI--------GVKLS---SL 292 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHH--------HHHHH---HH
Confidence 55321 123444444444333 2233333223333333333211111000000 00111 11
Q ss_pred HHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccH
Q 010031 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264 (520)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 264 (520)
..+.|..+.. .+-..+.+++.+..-.|+.+.|.+..+++.......|
T Consensus 293 lg~kg~~~~~---------~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 293 LGRKGSLEKM---------QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHhhcccccc---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 1122221111 3444566777777777888888888777776555555
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.71 Score=43.33 Aligned_cols=150 Identities=11% Similarity=0.041 Sum_probs=86.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC--hhH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP---DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKH 435 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 435 (520)
...+|..++..+.+.|.++.|...+.++...+..+ .+.....-+......|+..+|+..++...... +..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~-~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR-LSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhhcccccc
Confidence 44578888888999999999999888887743211 22344444555667888889998888876411 1111 111
Q ss_pred HHHHHHHHhccCChHHHHHHH-hhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 436 HTVVVNLLSRVGQVDKALNFI-NKMPETPDFVIWGALFCACRTH------KDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
...+...+.. ..+.....- .....+.-...+..+...+... ++.+++...|.++.++.|+...++..++.+
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 000000000 0000000112333333334444 888999999999999999999999999988
Q ss_pred hhhcc
Q 010031 509 MQQKG 513 (520)
Q Consensus 509 ~~~~g 513 (520)
+...-
T Consensus 302 ~~~~~ 306 (352)
T PF02259_consen 302 NDKLL 306 (352)
T ss_pred HHHHH
Confidence 87653
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.57 Score=40.28 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=87.9
Q ss_pred HhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHc-----
Q 010031 342 AKCGNIEAASLVFGETKEK------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWY----- 409 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~----- 409 (520)
.+.|++++|.+.|+.+... ...+.-.++.++.+.++++.|+...++....- -.||. -|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccCC
Confidence 4456666666666655542 11234445666667777777777777766631 12222 33333333321
Q ss_pred --cCcHHH---HHHHHHHcHhhc---CCCCChhH------------HHHHHHHHhccCChHHHHHHHhhCCCC-CC----
Q 010031 410 --SGQVKL---ALNFFDSMRFDY---FIEPSVKH------------HTVVVNLLSRVGQVDKALNFINKMPET-PD---- 464 (520)
Q Consensus 410 --~g~~~~---a~~~~~~~~~~~---~~~~~~~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~---- 464 (520)
..|... |..-|+.+.+++ ...||+.. =..+.+.|.+.|.+..|..-+++|.+. |+
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence 123333 333333333322 11122111 124567788999999999988888762 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q 010031 465 FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 465 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 499 (520)
....-.+..+|...|-.++|...-+-+-.-.|+++
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 23455666789999999999887766555567665
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.045 Score=43.72 Aligned_cols=71 Identities=23% Similarity=0.365 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHh----hcCCCCChhHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRF----DYFIEPSVKHH 436 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 436 (520)
....++..+...|++++|..+++.+.. ..| +...|..+|.++...|+...|.+.|+++.+ +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 344566677778888888888888887 455 445888888888888888888888877643 46778877653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.11 Score=48.59 Aligned_cols=122 Identities=13% Similarity=0.067 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHHc---------cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc
Q 010031 378 YEQAIQYFKKMMY-SGTEPDGT-VFLAILTACWY---------SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (520)
Q Consensus 378 ~~~a~~~~~~~~~-~~~~p~~~-~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (520)
.+.|..+|.+... +.+.|+.. .|..+..++.. ..+..+|.++.++..+.. +-|+.....+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhh
Confidence 4456666666651 12455543 33333332221 223445555555555321 33455555566666666
Q ss_pred CChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcch
Q 010031 447 GQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 447 g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
|+++.|...|++... .|| ..+|......+.-.|+.++|.+.++++++++|.-..+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 667777777776554 343 4455555556666777777777777777777754443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.66 Score=40.24 Aligned_cols=218 Identities=18% Similarity=0.112 Sum_probs=138.1
Q ss_pred ChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhccCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010031 276 EAEKALAMFFQMLDAGVR-ANDFTVVSALSACAKVGALEAGVRVHNYISCN-DFGLKGAIGTALVDMYAKCGNIEAASLV 353 (520)
Q Consensus 276 ~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 353 (520)
....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444443211 12345555555666666666666666665542 2233444555556666666667777777
Q ss_pred HhcCCC--CCh-hHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 354 FGETKE--KDL-LTWTAMIW-GLAIHGRYEQAIQYFKKMMYSGTEP----DGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 354 ~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
+..... ++. ........ .+...|+++.|...+++... ..| ....+......+...++.+.+...+.....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 766554 211 22223333 67788999999999988855 333 223444444456678899999999988874
Q ss_pred hcCCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 010031 426 DYFIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 426 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 497 (520)
.. +. ....+..+...+...++++.|...+..... .|+ ...+..+...+...|+.+.+...+.+.++..|.
T Consensus 196 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LN--PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hC--cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 22 33 356777888888888899999999888765 344 445555555555777899999999999998887
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.22 Score=46.63 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT----VFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
...++.+..+|...|++++|+..|++.++ +.|+.. +|..+..+|...|++++|++.+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555566666666666666666666555 345432 355555666666666666666665553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0099 Score=41.41 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=36.3
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhh---cCC-CCC-hhHHHHHHHHHhccCChHHHHHHHhhC
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFD---YFI-EPS-VKHHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
+++.+...|...|++++|+..+++..+. .|- .|. ..++..+..+|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5566666666666666666666665431 110 111 345667777777777777777777653
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.25 Score=47.37 Aligned_cols=132 Identities=18% Similarity=0.257 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhc
Q 010031 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243 (520)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 243 (520)
....+.++..+.+.|..+.|+.+...- ..-.+...+.|+++.|.++.++.. +...|..|.....+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHc
Confidence 334666777777777777777765331 123455567777777777766554 556777777777777
Q ss_pred CCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHH
Q 010031 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320 (520)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (520)
|+++-|++.|.+.. -|..|+-.|.-.|+.+...++.+.....| -++..+.++.-.|+.++..+++.
T Consensus 361 g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 361 GNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp TBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred CCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777765 35666667777777777666666666554 23444455555566666655554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.033 Score=43.13 Aligned_cols=58 Identities=16% Similarity=0.059 Sum_probs=32.3
Q ss_pred HhccCChHHHHHHHhhCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 443 LSRVGQVDKALNFINKMPET-----PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
..+.|++++|++.|+.+..+ -....-..++.++.+.|++++|...+++.++++|.+|.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34556666666666665441 11223444555666666666666666666666665554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.7 Score=43.78 Aligned_cols=220 Identities=12% Similarity=0.061 Sum_probs=146.6
Q ss_pred CCCCCHHHHHHHHHhccCchHHHH----HHHHHHHhC------------CCCChHHHHHHHHHHhcCCChHHHHHHhccc
Q 010031 26 SNNITETHIISLIHSSNSTKQLRQ----IHAQIILHN------------LFASSRITTQLISSASLHKSIDYALSIFDHF 89 (520)
Q Consensus 26 ~~~~~~~~~~~~l~~~~~~~~a~~----~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 89 (520)
.++.+.+.+..++..+++.-.-.- +.+-+...+ ..........-++.+.+..-++.|..+.+.-
T Consensus 281 ~s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~ 360 (933)
T KOG2114|consen 281 LSNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ 360 (933)
T ss_pred cCccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc
Confidence 456677788888888886533333 333333222 1122344556778888888899999888765
Q ss_pred CCCCc---chHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhH
Q 010031 90 TPKNL---HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166 (520)
Q Consensus 90 ~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 166 (520)
.-+.. .........+.+.|++++|..-|-+-... +.| ..++.-|....++.+--..++.+.+.|+. +...
T Consensus 361 ~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dh 433 (933)
T KOG2114|consen 361 HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDH 433 (933)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchh
Confidence 43222 23334445677899999999988776542 223 33666777777777888888999998874 5555
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCH
Q 010031 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246 (520)
Q Consensus 167 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 246 (520)
-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|..+-..... +......++ -..+++
T Consensus 434 ttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~ill---e~~~ny 506 (933)
T KOG2114|consen 434 TTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDILL---EDLHNY 506 (933)
T ss_pred HHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHHH---HHhcCH
Confidence 6679999999999999988887766 3321 12244566777777888888777665554 344444443 356889
Q ss_pred HHHHHHHhcCCCC
Q 010031 247 KKAGELFEQMPEK 259 (520)
Q Consensus 247 ~~a~~~~~~~~~~ 259 (520)
++|++.+..++-+
T Consensus 507 ~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 507 EEALRYISSLPIS 519 (933)
T ss_pred HHHHHHHhcCCHH
Confidence 9999999988744
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.39 Score=46.74 Aligned_cols=117 Identities=12% Similarity=0.027 Sum_probs=80.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHccCcHHHHHHHHHHcHhhcCC--CCChhHHHHHHHHHhccCChHH
Q 010031 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAIL-TACWYSGQVKLALNFFDSMRFDYFI--EPSVKHHTVVVNLLSRVGQVDK 451 (520)
Q Consensus 375 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 451 (520)
..+.+.|.++++.+.+ .-|+...|...- +.+...|++++|++.+++......- +.....+.-++..+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 4567888899999888 478877655443 3566789999999999875421111 1223455667788888999999
Q ss_pred HHHHHhhCCCC--CCHHHHHHHHHH-HHHcCCH-------HHHHHHHHHHhc
Q 010031 452 ALNFINKMPET--PDFVIWGALFCA-CRTHKDT-------KIAKIALQSSCS 493 (520)
Q Consensus 452 A~~~~~~~~~~--~~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~~~ 493 (520)
|.+.|.++... -+..+|..+..+ +...|+. ++|..++.++-.
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999988762 334455544444 5567777 788888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.031 Score=44.19 Aligned_cols=111 Identities=16% Similarity=0.196 Sum_probs=70.4
Q ss_pred HHHHHHH---HHHccCcHHHHHHHHHHcHhhcCCCCChh-HHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHH
Q 010031 399 VFLAILT---ACWYSGQVKLALNFFDSMRFDYFIEPSVK-HHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFC 473 (520)
Q Consensus 399 ~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~ 473 (520)
+...|+. .-...++.+++..+++.+.. +.|... .-..-...+.+.|++.+|+.+|+++.. .|....-..|+.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 4444444 44577899999999999875 355533 222344557789999999999999876 355555566666
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 474 ACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 474 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
.|.....-..-..+.+++++..| ++.+...+..+....+
T Consensus 86 ~CL~~~~D~~Wr~~A~evle~~~-d~~a~~Lv~~Ll~~~~ 124 (160)
T PF09613_consen 86 LCLYALGDPSWRRYADEVLESGA-DPDARALVRALLARAD 124 (160)
T ss_pred HHHHHcCChHHHHHHHHHHhcCC-ChHHHHHHHHHHHhcc
Confidence 65554433445666667777665 4555555554444433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.55 Score=37.07 Aligned_cols=127 Identities=9% Similarity=0.054 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHh
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (520)
...++..+...+.+.....+++.+...+. .+....+.++..|++.+ ..+..+.++. .++.......+..+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 34556666666777777777777777652 45557777777776543 3344444432 112223334666667
Q ss_pred ccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTH-KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
+.+-++++.-++.++.. +...+..+... ++.+.|.+.+.+ ++++..|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 77777777777777653 22233333333 777777777765 3466677666665543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.051 Score=46.94 Aligned_cols=95 Identities=19% Similarity=0.236 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-hHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTV 438 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~ 438 (520)
.|+..+.. .+.|++..|..-|...++.. |+. ..+-.|..++...|++++|..+|..+.+.++-.|.. ..+-.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 35554443 45677888888888888752 322 255667788888888888888888887766555543 57777
Q ss_pred HHHHHhccCChHHHHHHHhhCCC
Q 010031 439 VVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
|..+..+.|+.++|..+|+++..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 88888888888888888888765
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.8 Score=42.00 Aligned_cols=364 Identities=10% Similarity=0.010 Sum_probs=177.1
Q ss_pred CchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHh-CCChhHHHHHHH
Q 010031 43 STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAE-NSHFQSCISHFV 118 (520)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-~~~~~~A~~~~~ 118 (520)
+...+..++..++..- |.-.--|......=.+.|..+.+.++|++... .++..|...+..+.. .|+.+...+.|+
T Consensus 60 ~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4455666777766552 22334455666666678899999999987654 455566666665444 577888888888
Q ss_pred HhhhC-CCCC-CcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHh-----cCChhHHHHHhccCC
Q 010031 119 FMLRL-SVRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ-----LGKTRGAFKVFDETP 191 (520)
Q Consensus 119 ~m~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~ 191 (520)
..... |..- ...-|...|..-..++++.....++++.++.-...=...|.......-. ....+.+.++-....
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~ 218 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVA 218 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHH
Confidence 87763 3322 3335666777667788888888888888763111001111111111111 112222222211111
Q ss_pred --------------------CCCCCCCch--hHHHHHHH-------HHhcCChhHHHHHHhhCCC-----------CCHH
Q 010031 192 --------------------EKNKSESVL--LWNVLING-------CSKIGYLRKAVELFGMMPK-----------KNVA 231 (520)
Q Consensus 192 --------------------~~~~~~~~~--~~~~l~~~-------~~~~g~~~~a~~~~~~~~~-----------~~~~ 231 (520)
..+-+.+.. ..+.+-.. +...-........++.-.+ ++..
T Consensus 219 ~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~ 298 (577)
T KOG1258|consen 219 ERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLK 298 (577)
T ss_pred hhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHH
Confidence 000000000 01111111 1111112222222222222 2345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 010031 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308 (520)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 308 (520)
+|..-+..-.+.|+.+.+.-+|+...-+- ...|--.+.-....|+.+-|..++....+--++-.+.+-..-....-.
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~ 378 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES 378 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh
Confidence 66666777777777777777777765442 233444444444457766666666555443222222221111122334
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH---HHHhcCCC--CChhHHHHHHHH-----HHHcCCH
Q 010031 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS---LVFGETKE--KDLLTWTAMIWG-----LAIHGRY 378 (520)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~--~~~~~~~~l~~~-----~~~~~~~ 378 (520)
.|++..|..+++.+...- +.-..+-..-+....+.|+.+.+. +++..... .+......+.-- +.-.++.
T Consensus 379 ~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~ 457 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDA 457 (577)
T ss_pred hccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCH
Confidence 567777777777776543 212222233344455566666665 33333322 122222222211 2234566
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010031 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409 (520)
Q Consensus 379 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 409 (520)
+.|..++.++.+. +.++...|..++..+..
T Consensus 458 ~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 458 DLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred HHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 6777777776663 33344455555554443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.014 Score=32.66 Aligned_cols=33 Identities=15% Similarity=-0.071 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 466 VIWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
.+|..+...+...|++++|...++++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 367778888999999999999999999999854
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.79 E-value=1.5 Score=44.20 Aligned_cols=246 Identities=11% Similarity=0.056 Sum_probs=141.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 010031 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGV---VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309 (520)
Q Consensus 233 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 309 (520)
...-++.+.+...++.|..+-+.-..... .......+.+.+.|++++|...|-+-... +.|. .++.-+...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 34455666677777777776655433221 23344455667888999998888776543 3332 244455666
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010031 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL-LTWTAMIWGLAIHGRYEQAIQYFKKM 388 (520)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 388 (520)
.....-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+...+... .-....+..+.+.+-.++|..+-.+.
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 6677777788888888864 455567788999999999988888887663211 12445666677777777776665544
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC--hhHHHHHHHHHhccCChHH----HHHHHhhCCCC
Q 010031 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVGQVDK----ALNFINKMPET 462 (520)
Q Consensus 389 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~ 462 (520)
.. .......++ -..+++++|+++++.+- |+ ..+.+.....+... ..++ .++++......
T Consensus 490 ~~-----he~vl~ill---e~~~ny~eAl~yi~slp------~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~ 554 (933)
T KOG2114|consen 490 KK-----HEWVLDILL---EDLHNYEEALRYISSLP------ISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQ 554 (933)
T ss_pred cc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC------HHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCC
Confidence 32 333333333 35688999999887763 22 12222222222221 2233 23333322210
Q ss_pred CCHHHH----HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 463 PDFVIW----GALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 463 ~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
+..... ..+-....-.++++.-...++.+.+..|+++.
T Consensus 555 ~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 555 GKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred CCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 000000 11112233456777777777777777777665
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.76 Score=36.27 Aligned_cols=128 Identities=8% Similarity=0.031 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCC
Q 010031 29 ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108 (520)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 108 (520)
.....++..+...+.+.....+++.+...+ ..++..++.++..|++.+ .++..+.++. ..+......++..|.+.+
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 344567777777777888888888887776 356778888888887653 3333344442 233444555666666666
Q ss_pred ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhcc-CChhhHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010031 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL-SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175 (520)
Q Consensus 109 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (520)
-++++.-++.++.. +...+..+... ++.+.|.+.... ..++..|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 66666666665532 22233333333 555555555443 124445555555443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.64 Score=38.08 Aligned_cols=129 Identities=11% Similarity=0.026 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh----hHHHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL--AILTACWYSGQVKLALNFFDSMRFDYFIEPSV----KHHTV 438 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 438 (520)
|..++.+.. .+.+ +.....+++....-.-...++. .+...+...|++++|...++.... . +.|. ..--.
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~-~--t~De~lk~l~~lR 131 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA-Q--TKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc-c--chhHHHHHHHHHH
Confidence 333444332 3333 4555556666532222222333 334567889999999999998763 1 2221 12235
Q ss_pred HHHHHhccCChHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q 010031 439 VVNLLSRVGQVDKALNFINKMPETPDFV--IWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 499 (520)
|.+.....|.+++|+..++.... ++.. ....-...+...|+.++|...|+++++..++++
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~-~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKE-ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhcccc-ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 67788899999999999998875 3333 234445679999999999999999999885443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.19 Score=45.93 Aligned_cols=140 Identities=13% Similarity=-0.029 Sum_probs=80.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcH
Q 010031 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA--IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413 (520)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 413 (520)
.-.+.|.+.|++..|..-|+.+.. .+. ..-+.++.. ... ..-..++..+..++.+.+++
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~-----------~l~~~~~~~~ee~~-~~~-------~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVS-----------FLEYRRSFDEEEQK-KAE-------ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHH-----------HhhccccCCHHHHH-HHH-------HHHHHHhhHHHHHHHhhhhH
Confidence 345678889999988887766432 000 000111111 111 11233566677777777788
Q ss_pred HHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHH-HHHHHHHHHHcCC-HHHHHHHHHH
Q 010031 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVI-WGALFCACRTHKD-TKIAKIALQS 490 (520)
Q Consensus 414 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~l~~~~~~~g~-~~~A~~~~~~ 490 (520)
..|++...+.... -++|+...-.-..+|...|+++.|+..|+++.. .|+... -..++....+..+ .++..++|.+
T Consensus 274 ~~Ai~~c~kvLe~--~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 274 KEAIESCNKVLEL--DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHhc--CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777642 145566666667777777888888888877665 455443 3334443333333 3445777777
Q ss_pred HhcCCC
Q 010031 491 SCSLNL 496 (520)
Q Consensus 491 ~~~~~p 496 (520)
|+...+
T Consensus 352 mF~k~~ 357 (397)
T KOG0543|consen 352 MFAKLA 357 (397)
T ss_pred Hhhccc
Confidence 776544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.7 Score=39.08 Aligned_cols=18 Identities=11% Similarity=-0.169 Sum_probs=11.6
Q ss_pred HHHcCCHHHHHHHHHHHh
Q 010031 475 CRTHKDTKIAKIALQSSC 492 (520)
Q Consensus 475 ~~~~g~~~~A~~~~~~~~ 492 (520)
+.+.++++.|.+.|+-++
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 456777777777766543
|
It is also involved in sporulation []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.14 Score=40.80 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH-----HcCCCCChhHH
Q 010031 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS-----CNDFGLKGAIG 334 (520)
Q Consensus 265 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 334 (520)
..++..+...|++++|..+.+.+.... +.+...+..+|.++...|+...|.+.|+.+. +.|+.|++.+-
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 344555566666667766666666653 4455666666777777777776666666552 24666665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.16 Score=38.92 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=40.5
Q ss_pred hcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC----CCCHHHHHHHHHHHH
Q 010031 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE----TPDFVIWGALFCACR 476 (520)
Q Consensus 426 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~ 476 (520)
...+.|+..+..+++.+|+..|++..|+++++.... +-+..+|..|+.-+.
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455678889999999999999999999999988654 344778888886543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.72 Score=44.27 Aligned_cols=161 Identities=14% Similarity=0.094 Sum_probs=95.1
Q ss_pred HHHHhCCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 010031 269 NGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347 (520)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 347 (520)
+...-.++++++.++...-. -..+ | ......++.-+.+.|..+.|..+... +. .-.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCH
Confidence 44556777777766664111 1112 2 33466677777778888877776432 21 234556678888
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhc
Q 010031 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427 (520)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 427 (520)
+.|.++.++.. +...|..|.......|+++-|++.|++... |..|+-.|...|+.+...++.+.... .
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~-~ 402 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE-R 402 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH-T
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH-c
Confidence 88888877665 556888888888888888888888877543 44555566677887777666666553 2
Q ss_pred CCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 428 FIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 428 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
| -++....++.-.|+.++..+++.+...
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 1 244555556667888888888777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.35 Score=42.98 Aligned_cols=118 Identities=12% Similarity=-0.063 Sum_probs=59.2
Q ss_pred hCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChh----HHHHHHHHHHhcCChh
Q 010031 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF----VRVHLADMYVQLGKTR 181 (520)
Q Consensus 106 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~ 181 (520)
..|++.+|-..++++.+ ..+.|...+...=++|.-.|+...-...++++... -.+|.. +...+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34555555555555554 23344445555555555556555555555555432 012221 2222223334556666
Q ss_pred HHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCC
Q 010031 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226 (520)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 226 (520)
+|++.-++..+.+ +.|..+..++...+-..|+..++.+...+-.
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 6666666555554 4455555555555555566665555554433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.093 Score=49.15 Aligned_cols=105 Identities=13% Similarity=0.093 Sum_probs=79.3
Q ss_pred cHHHHHHHHHHcHhhcCCCCCh-hHHHHHHHHHhc---------cCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcC
Q 010031 412 QVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSR---------VGQVDKALNFINKMPE--TPDFVIWGALFCACRTHK 479 (520)
Q Consensus 412 ~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g 479 (520)
..+.|..+|.+......+.|+. ..|..+..++.. .....+|.+..++..+ +.|+.....+..+..-.|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4667888888887444466663 455555544432 2345567777777665 467777778888888888
Q ss_pred CHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 480 DTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 480 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+.+.|...|++++.++|+.+.++.+.|++..-.|+.+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~ 389 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE 389 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999998865
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=2.2 Score=38.26 Aligned_cols=124 Identities=14% Similarity=0.022 Sum_probs=58.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-cHHHHHHHHHHcHhhcCCCCChhHHHHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG-QVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l 439 (520)
+..+-...+.++.+.++ .++...+-.+.+ .+|...-...+.++...+ +...+...+..+.. .++..+-...
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A 212 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEA 212 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHH
Confidence 33333344444544444 344444444443 333333333333443322 12344444444442 3444455555
Q ss_pred HHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 010031 440 VNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 496 (520)
+.++.+.|+ ..|+..+-+....++ .....+.++...|+. +|...+.++++.+|
T Consensus 213 ~~aLg~~~~-~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 213 IIGLALRKD-KRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHccCC-hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 666666665 344444444333333 223455556666664 46666666666666
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.034 Score=31.65 Aligned_cols=28 Identities=18% Similarity=0.033 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 467 IWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
+|..|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888899999999999999996654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.11 Score=40.38 Aligned_cols=95 Identities=16% Similarity=0.188 Sum_probs=57.7
Q ss_pred HHHHHHHHH---HHccCcHHHHHHHHHHcHhhcCCCCChh-HHHHHHHHHhccCChHHHHHHHhhCCCC-CCHHHHHHHH
Q 010031 398 TVFLAILTA---CWYSGQVKLALNFFDSMRFDYFIEPSVK-HHTVVVNLLSRVGQVDKALNFINKMPET-PDFVIWGALF 472 (520)
Q Consensus 398 ~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~ 472 (520)
.+.+.|+.. -...++.+++..+++.+.- +.|+.. .-..-...+...|++++|+.+|+++... +....-..|+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 344444443 3457889999999998875 345432 2222445567889999999999998874 3434444444
Q ss_pred HHHH-HcCCHHHHHHHHHHHhcCCC
Q 010031 473 CACR-THKDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 473 ~~~~-~~g~~~~A~~~~~~~~~~~p 496 (520)
..|. ..||.+ =..+...+++..+
T Consensus 85 A~CL~al~Dp~-Wr~~A~~~le~~~ 108 (153)
T TIGR02561 85 ALCLNAKGDAE-WHVHADEVLARDA 108 (153)
T ss_pred HHHHHhcCChH-HHHHHHHHHHhCC
Confidence 4444 455544 4555555555443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.1 Score=38.16 Aligned_cols=205 Identities=13% Similarity=0.082 Sum_probs=109.4
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (520)
.|..-..+|...+++++|...+.+..+. ...+ ..+... ...++.|.-+.+++.+. +--...++.-...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnn-rslfhA------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENN-RSLFHA------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhc-ccHHHH------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 4555555666667777776666555431 1111 111111 12234444444444432 122334555566677
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHccCcHHHHH
Q 010031 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS---GT--EPDGTVFLAILTACWYSGQVKLAL 417 (520)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~p~~~~~~~l~~~~~~~g~~~~a~ 417 (520)
.+|.++.|-..+++.-+ .....++++|+++|++...- +- +.-...+..+-..+.+...+++|-
T Consensus 103 E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 77776666554443221 22345677777777775441 10 011124455555667777777766
Q ss_pred HHHHHcHh---hcCCCCCh-hHHHHHHHHHhccCChHHHHHHHhhCCC------CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010031 418 NFFDSMRF---DYFIEPSV-KHHTVVVNLLSRVGQVDKALNFINKMPE------TPDFVIWGALFCACRTHKDTKIAKIA 487 (520)
Q Consensus 418 ~~~~~~~~---~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 487 (520)
..+.+-.. ...--++. ..|-..|-+|.-..++..|.+.++.-.. +.+..+...|+.+| ..||.+++..+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 55544321 01112222 3355566667777889999999887332 23456777777776 67888887776
Q ss_pred HHH
Q 010031 488 LQS 490 (520)
Q Consensus 488 ~~~ 490 (520)
+..
T Consensus 250 l~s 252 (308)
T KOG1585|consen 250 LSS 252 (308)
T ss_pred HcC
Confidence 643
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.083 Score=33.06 Aligned_cols=42 Identities=12% Similarity=-0.089 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 469 GALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 469 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
..+.-++.+.|++++|.+..+.+++.+|+|.++......+-.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 345667899999999999999999999999998876655543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.02 E-value=2 Score=36.68 Aligned_cols=202 Identities=9% Similarity=0.047 Sum_probs=114.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 010031 232 SWVSLIDGFMRKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309 (520)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 309 (520)
.|.--..+|...+++++|...+.+..+ .+-.++ +.....++.|.-+.++|.+. ..-...|......|...
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHh
Confidence 455555667777778877776655431 011111 12223355666666666652 22234566667778888
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC------C---ChhHHHHHHHHHHHcCCHHH
Q 010031 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE------K---DLLTWTAMIWGLAIHGRYEQ 380 (520)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~---~~~~~~~l~~~~~~~~~~~~ 380 (520)
|..+.|-..+++.-+. ...-++++|++++++... + -...+......+.+...+++
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 8888877777765432 112234444444433221 1 12345556667778788877
Q ss_pred HHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCC--CCChhHHHHHHHHHhccCChHHHH
Q 010031 381 AIQYFKKMMYS----GTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFI--EPSVKHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 381 a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 453 (520)
|-..+.+-... .-.|+. ..|...|-.+....++..|...++.-.+-.++ +-+..+...|+.+| ..|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 76666543221 112333 25666666777788999999999884432222 23456777788776 457878777
Q ss_pred HHHhh
Q 010031 454 NFINK 458 (520)
Q Consensus 454 ~~~~~ 458 (520)
+++..
T Consensus 248 kvl~s 252 (308)
T KOG1585|consen 248 KVLSS 252 (308)
T ss_pred HHHcC
Confidence 77654
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=95.01 E-value=3.4 Score=39.36 Aligned_cols=159 Identities=12% Similarity=0.069 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHH
Q 010031 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGL 372 (520)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 372 (520)
.....+++..+.......-++.+..+|...| -+...+..++++|... ..+.-..+|+++.+ .|++.-..|+..|
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3334444444444444444444444444433 2333344444444444 23333344443322 2222223333333
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC---C---HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEP---D---GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p---~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (520)
.+ ++.+.+..+|.++... +-| + ...|..+... -..+.+....+..++..+.|...-...+.-+-.-|...
T Consensus 143 Ek-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 33 4445555555554432 111 0 0133333321 13455666666666665555544455555555666677
Q ss_pred CChHHHHHHHhhCCC
Q 010031 447 GQVDKALNFINKMPE 461 (520)
Q Consensus 447 g~~~~A~~~~~~~~~ 461 (520)
.++++|++++.-+.+
T Consensus 219 eN~~eai~Ilk~il~ 233 (711)
T COG1747 219 ENWTEAIRILKHILE 233 (711)
T ss_pred cCHHHHHHHHHHHhh
Confidence 777777777776554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.98 E-value=2.1 Score=36.89 Aligned_cols=199 Identities=17% Similarity=0.141 Sum_probs=142.8
Q ss_pred cCChHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHHcCCHHHHH
Q 010031 309 VGALEAGVRVHNYISCNDFG-LKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDLLTWTAMIWGLAIHGRYEQAI 382 (520)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~ 382 (520)
.+....+...+......... ............+...+.+..+...+..... .....+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34455555555555544322 1356677788888899999998888876542 34456777777888888999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHccCcHHHHHHHHHHcHhhcCCCC----ChhHHHHHHHHHhccCChHHHHHHHh
Q 010031 383 QYFKKMMYSGTEPDGTVFLAILT-ACWYSGQVKLALNFFDSMRFDYFIEP----SVKHHTVVVNLLSRVGQVDKALNFIN 457 (520)
Q Consensus 383 ~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (520)
..+.........+. ........ .+...|+++.|...+.+... ..| ....+......+...++.+++...+.
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 99999988543331 22222233 68899999999999999853 233 23344445555678899999999999
Q ss_pred hCCC-CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 458 KMPE-TPD--FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 458 ~~~~-~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
+... .++ ...+..+...+...|+++.|...+..+++..|.....+...+..+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLE 248 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH
Confidence 8765 333 56788888889999999999999999999999866666666666663
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.97 E-value=2.2 Score=37.58 Aligned_cols=139 Identities=13% Similarity=0.128 Sum_probs=64.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChH
Q 010031 372 LAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450 (520)
Q Consensus 372 ~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (520)
....|++.+|..+|...... .| +......+..+|...|+++.|..++..+-.+.. .........-+..+.+.....
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcCC
Confidence 34456666666666665553 22 223444555566666666666666655532110 011111122233344444444
Q ss_pred HHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CCCCcchhHHHHhhhhhcc
Q 010031 451 KALNFINKMPETP-DFVIWGALFCACRTHKDTKIAKIALQSSCSL--NLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 451 ~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g 513 (520)
+...+-.+.-..| |...-..+...+...|+.+.|.+.+=.+++. .-++..+-..+..++...|
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4444444433333 3444445555566666666666655555543 2234444444444444444
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.0033 Score=50.13 Aligned_cols=130 Identities=9% Similarity=0.026 Sum_probs=86.5
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChh
Q 010031 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQ 111 (520)
Q Consensus 32 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 111 (520)
..++..+...+.+.....+++.+...+...+....+.++..|++.++.+...+.++.... .-...++..|.+.|.++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 345667777788888888999888877677789999999999999888888888884322 44556778888888888
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 010031 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179 (520)
Q Consensus 112 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 179 (520)
+|.-++.++.... ..+..+...++++.|.+.... .+++.+|..+++.+...+.
T Consensus 88 ~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 88 EAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 8888887764311 111123344555555533322 2456677777776655544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.94 E-value=4.5 Score=40.41 Aligned_cols=139 Identities=18% Similarity=0.109 Sum_probs=78.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 371 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
++..-|+-++|..+.++|.... .|-.. -...+..+|+-.|+.....+++.-... ...-|+.-+..+.-++.-..+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecC
Confidence 3445567777888888877642 33222 223344567777777666666655442 223445555555566666777
Q ss_pred hHHHHHHHhhCCCC--CCHHH--HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc---chhHHHHhhhhhccC
Q 010031 449 VDKALNFINKMPET--PDFVI--WGALFCACRTHKDTKIAKIALQSSCSLNLSIP---QAMSYCQTFMQQKGD 514 (520)
Q Consensus 449 ~~~A~~~~~~~~~~--~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~ 514 (520)
.+....+++-+.+. |.... -.+|.-+|.-.|+ .+|+.+++-+.+ +|.+. .++..++.++.|.-+
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhccc
Confidence 77777777766653 33332 2233344555555 558888887766 55443 344445555555433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.99 Score=43.98 Aligned_cols=145 Identities=10% Similarity=0.022 Sum_probs=94.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHH----ccCcHHHHHHHHHHcHhhcCCCCChhHHH
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSG-TEPDG-----TVFLAILTACW----YSGQVKLALNFFDSMRFDYFIEPSVKHHT 437 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~-----~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 437 (520)
++....=.||-+.+++.+.+..+.+ +.-.. -.|...+..++ ...+.+.|.++++.+.+. -|+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHH
Confidence 3444444566677776666655421 11111 12333333332 245788999999999864 36655554
Q ss_pred -HHHHHHhccCChHHHHHHHhhCCC-C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH-Hhhh
Q 010031 438 -VVVNLLSRVGQVDKALNFINKMPE-T-----PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC-QTFM 509 (520)
Q Consensus 438 -~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-~~~~ 509 (520)
.-.+.+...|++++|++.+++... . .....+.-+...+...+++++|...+.++.+.+.-+...|.++ |.++
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 345677789999999999998654 1 2233455677778889999999999999999877777666664 4555
Q ss_pred hhccCC
Q 010031 510 QQKGDG 515 (520)
Q Consensus 510 ~~~g~~ 515 (520)
...|+.
T Consensus 351 ~~l~~~ 356 (468)
T PF10300_consen 351 LMLGRE 356 (468)
T ss_pred Hhhccc
Confidence 566654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.79 E-value=5.4 Score=40.56 Aligned_cols=48 Identities=15% Similarity=0.056 Sum_probs=33.8
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhcc
Q 010031 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142 (520)
Q Consensus 93 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 142 (520)
+...|. +|-.|.|.|++++|.++...... ........+...+..+...
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 344554 67779999999999999966654 3445566778888888765
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.083 Score=46.82 Aligned_cols=100 Identities=9% Similarity=0.000 Sum_probs=58.4
Q ss_pred HHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHH
Q 010031 406 ACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPETPD--FVIWGALFCACRTHKDTK 482 (520)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 482 (520)
-|.+.|.+++|+..|..... +.| ++.++..-..+|.+..++..|..-++....-.+ ...|.--+.+-...|...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 35666777777777666553 233 566666666667776666666665555443111 123444444445567777
Q ss_pred HHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 483 IAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 483 ~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
+|.+-++.++++.|++...-..++.+
T Consensus 183 EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 77777777777777765554444433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.76 Score=41.42 Aligned_cols=163 Identities=16% Similarity=0.162 Sum_probs=92.3
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCC---CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCC-----CCChh
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDA-GVRA---NDFTVVSALSACAKVGALEAGVRVHNYISCNDF-----GLKGA 332 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~ 332 (520)
.+|..+.+++-+..++.+++.+-+.-... |..| .-....++..+....+.++++.+.|+...+... .....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34555555555555566666555443332 2222 112233455566666777777777777654321 12345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-------CChh------HHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCC
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKE-------KDLL------TWTAMIWGLAIHGRYEQAIQYFKKMMY----SGTEP 395 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p 395 (520)
++..|...|.+..++++|.-+..+... .|.. +...|.-++...|..-.|.+..++..+ .|-+|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 677777888888888777655443322 2221 223344566677777777777766543 34333
Q ss_pred CHH-HHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 396 DGT-VFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 396 ~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
... ....+...|...|+.+.|+.-|+...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 332 55566677778888888887777653
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.64 E-value=1.1 Score=35.75 Aligned_cols=114 Identities=16% Similarity=0.038 Sum_probs=64.8
Q ss_pred HHHHHHH---HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHH-H
Q 010031 365 WTAMIWG---LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI-LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV-V 439 (520)
Q Consensus 365 ~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-l 439 (520)
.+.|+.. -...++.+++..++..+.- ++|.......+ ...+...|++.+|..+++.+... .|....-.. +
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALl 84 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER---APGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc---CCCChHHHHHH
Confidence 3444443 3467899999999999988 67776633322 33467899999999999998753 233222223 3
Q ss_pred HHHHhccCChH---HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010031 440 VNLLSRVGQVD---KALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIA 487 (520)
Q Consensus 440 ~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 487 (520)
..++...|+.+ .|.++++. .+|+.+ ..++..+....+...|...
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~---~~d~~a-~~Lv~~Ll~~~~~~~a~~~ 131 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLES---GADPDA-RALVRALLARADLEPAHEA 131 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhc---CCChHH-HHHHHHHHHhccccchhhh
Confidence 34444444432 23333322 233333 3455555555555445443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.067 Score=29.52 Aligned_cols=31 Identities=13% Similarity=-0.215 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 468 WGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 468 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
+..+..++.+.|++++|.+.++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3456677888999999999999999999975
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.61 Score=42.04 Aligned_cols=143 Identities=10% Similarity=0.014 Sum_probs=79.2
Q ss_pred CCCCCHHHHHHHHHhccC-chH----HHHHHHHHHHhCCCCChHHHHHHHHHHhc--C----CChHHHHHHhcccCC---
Q 010031 26 SNNITETHIISLIHSSNS-TKQ----LRQIHAQIILHNLFASSRITTQLISSASL--H----KSIDYALSIFDHFTP--- 91 (520)
Q Consensus 26 ~~~~~~~~~~~~l~~~~~-~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~A~~~~~~~~~--- 91 (520)
-.......++..+...+. ++. ...+++.+.+.|...+..++-+....... . .....|..+++.|.+
T Consensus 55 lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 55 LRGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP 134 (297)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc
Confidence 344455677777777775 544 46788888888887777666554433332 2 234567777777764
Q ss_pred ----CCcchHHHHHHHHHhCCC----hhHHHHHHHHhhhCCCCCCcc--cHHHHHHHHhccCC--hhhHHHHHHHHHHhC
Q 010031 92 ----KNLHIFNVLIRGLAENSH----FQSCISHFVFMLRLSVRPNRL--TYPFVSKSVASLSL--LSLGRGLHCLIVKSG 159 (520)
Q Consensus 92 ----~~~~~~~~li~~~~~~~~----~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~ 159 (520)
++-.++..++.. ..++ .+.+..+|+.+.+.|...+.. ..+.++..+..... ...+.++++.+.+.|
T Consensus 135 fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~ 212 (297)
T PF13170_consen 135 FLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNG 212 (297)
T ss_pred cccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcC
Confidence 233344444443 2222 245566677777666654333 23333332222211 345666777777777
Q ss_pred CCCChhHHHHH
Q 010031 160 VEYDAFVRVHL 170 (520)
Q Consensus 160 ~~~~~~~~~~l 170 (520)
+++....|..+
T Consensus 213 ~kik~~~yp~l 223 (297)
T PF13170_consen 213 VKIKYMHYPTL 223 (297)
T ss_pred CccccccccHH
Confidence 66665555543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.45 Score=41.27 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=54.5
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC----------------ChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 010031 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG----------------ALEAGVRVHNYISCNDFGLKGAIGTALV 338 (520)
Q Consensus 275 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (520)
++.+-....++.|.+-|+.-|..+|..++..+-+.. +-+-++.++++|...|+.||..+-..|+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 445555566677777788888888887777665432 2345788899999999999999999999
Q ss_pred HHHHhcCCH
Q 010031 339 DMYAKCGNI 347 (520)
Q Consensus 339 ~~~~~~~~~ 347 (520)
+++.+.+-.
T Consensus 166 n~FGr~~~p 174 (406)
T KOG3941|consen 166 NAFGRWNFP 174 (406)
T ss_pred HHhcccccc
Confidence 999887754
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=6.8 Score=39.95 Aligned_cols=117 Identities=9% Similarity=-0.068 Sum_probs=74.9
Q ss_pred HcCCHHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChH
Q 010031 374 IHGRYEQAIQYFKKMMYS-GTEPDGT--VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450 (520)
Q Consensus 374 ~~~~~~~a~~~~~~~~~~-~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (520)
...+.+.|...+...... +..+... +...+.......+..+++...++.... . ..+......-+....+.++++
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~-~--~~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM-R--SQSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc-c--cCCcHHHHHHHHHHHHccCHH
Confidence 456779999999987553 3333332 344444444444336677777776542 1 234444555566666899999
Q ss_pred HHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 451 KALNFINKMPET--PDFVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 451 ~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
.+...+..|... -...-..=+..++...|+.++|...|+++..
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999998752 2222233355666779999999999999844
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.54 Score=42.32 Aligned_cols=218 Identities=11% Similarity=0.075 Sum_probs=107.8
Q ss_pred hcCCHHHHHHHHhcCCCC--C----cccHHHHHHHHHhCCChhHHHHHHHH-HHHc-CCCCCH---HHHHHHHHHhhccC
Q 010031 242 RKGDLKKAGELFEQMPEK--G----VVSWTAMINGFSQNGEAEKALAMFFQ-MLDA-GVRAND---FTVVSALSACAKVG 310 (520)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~-~~~p~~---~~~~~l~~~~~~~~ 310 (520)
...+.++|+..+.+...+ + ..++..+..+.+..|.+++++..--. |.-. ...-+. ..|..+.+++.+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666554332 1 34566667777777777766543221 1110 011111 22333444444444
Q ss_pred ChHHHHHHHHHHHHc-CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C--ChhHHHHHHHHHHHcCC
Q 010031 311 ALEAGVRVHNYISCN-DFGL---KGAIGTALVDMYAKCGNIEAASLVFGETKE-------K--DLLTWTAMIWGLAIHGR 377 (520)
Q Consensus 311 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~ 377 (520)
++.+++.+-+.-... |..+ .......+..++...+.++++.+.|+...+ + ....+..|...|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 455555444433221 1111 112223455566666667777766665443 1 12356677777777777
Q ss_pred HHHHHHHHHHHHH----CCCCCCHHHH-----HHHHHHHHccCcHHHHHHHHHHcHhh---cCCCCC-hhHHHHHHHHHh
Q 010031 378 YEQAIQYFKKMMY----SGTEPDGTVF-----LAILTACWYSGQVKLALNFFDSMRFD---YFIEPS-VKHHTVVVNLLS 444 (520)
Q Consensus 378 ~~~a~~~~~~~~~----~~~~p~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~ 444 (520)
+++|.-+..+..+ -++.--..-| ..+.-++...|.+..|.+.-++..+- .|-.+. ......+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 7777766555433 1222111122 22333455666666666666665431 121221 223445666777
Q ss_pred ccCChHHHHHHHhhC
Q 010031 445 RVGQVDKALNFINKM 459 (520)
Q Consensus 445 ~~g~~~~A~~~~~~~ 459 (520)
..|+.+.|..-++..
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 777777776666653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.14 E-value=2.5 Score=33.99 Aligned_cols=139 Identities=17% Similarity=0.114 Sum_probs=91.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHH--HHHHHHHhccCC
Q 010031 372 LAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH--TVVVNLLSRVGQ 448 (520)
Q Consensus 372 ~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~ 448 (520)
+.+.+..++|+.-|..+.+.|..--++ .-..........|+...|...|+++-....+|.-..-. ..-...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356778899999999998876653332 22233344567899999999999987543322211111 122345678899
Q ss_pred hHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 449 VDKALNFINKMPETPDF---VIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 449 ~~~A~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
++....-++.+..+.++ ..-..|.-+..+.|++..|.+.|..+.. +...|......+.++.+
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 99998888887653332 2345677778899999999999998876 44455555555554443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.33 Score=36.62 Aligned_cols=91 Identities=15% Similarity=0.085 Sum_probs=68.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh--hHHHHHHHHHhc
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV--KHHTVVVNLLSR 445 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 445 (520)
.-++...|+.+.|++.|.+.+. +-| ....|+.-..++.-.|+.++|+.=+.+..+-.|-+-.. ..|..-...|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3466788999999999999888 454 55689999999999999999999998887644433211 234444566778
Q ss_pred cCChHHHHHHHhhCCC
Q 010031 446 VGQVDKALNFINKMPE 461 (520)
Q Consensus 446 ~g~~~~A~~~~~~~~~ 461 (520)
.|+.+.|..-|+..-.
T Consensus 128 ~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQ 143 (175)
T ss_pred hCchHHHHHhHHHHHH
Confidence 8999999888877543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.67 Score=40.21 Aligned_cols=97 Identities=19% Similarity=0.155 Sum_probs=71.7
Q ss_pred HHHhcCC--CCChhHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-------------
Q 010031 352 LVFGETK--EKDLLTWTAMIWGLAI-----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG------------- 411 (520)
Q Consensus 352 ~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------------- 411 (520)
..|..+. ++|-.+|...+..|.. .+.++-....++.|.+-|+.-|..+|..|+..+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444444 3566677777776654 3455666667788888899999999999888765532
Q ss_pred ---cHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCCh
Q 010031 412 ---QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449 (520)
Q Consensus 412 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 449 (520)
+-.=++.++++|. .+|+.||-.+-..|++++.+.|..
T Consensus 135 YP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred CchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 3345788999998 689999999999999999988763
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.46 Score=38.94 Aligned_cols=96 Identities=11% Similarity=-0.038 Sum_probs=51.6
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcC
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRTHK 479 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g 479 (520)
+...|++.+|..-|..+... +++. ...|..-..++.+.+.++.|++-..+..+ .|. .....--..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 44556666666666665532 1222 12344444556666667777666666553 221 111112223466666
Q ss_pred CHHHHHHHHHHHhcCCCCCcchhHH
Q 010031 480 DTKIAKIALQSSCSLNLSIPQAMSY 504 (520)
Q Consensus 480 ~~~~A~~~~~~~~~~~p~~~~~~~~ 504 (520)
.+++|+.-|+++++.+|..-.+-..
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHH
Confidence 7777777777777777765544433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.07 E-value=1.6 Score=35.95 Aligned_cols=98 Identities=9% Similarity=0.033 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHH--HH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT--VV 439 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 439 (520)
.+..++.-|.+.|+.+.|.+.|.++.+....|... .+..+++.+.-.+++..+...+.++........|...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45667777788888888888888887765555544 566677777777888877777777653211111111111 11
Q ss_pred --HHHHhccCChHHHHHHHhhCCC
Q 010031 440 --VNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 440 --~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
.-.+...+++.+|-+.|-....
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 1223356788888777766543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.079 Score=31.83 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=11.9
Q ss_pred HHHHHHHHhccCChHHHHHHHhhCC
Q 010031 436 HTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
+..+...|.+.|++++|+++++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444445555555555554443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.93 E-value=2.2 Score=32.57 Aligned_cols=134 Identities=11% Similarity=0.071 Sum_probs=72.8
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHH---HHHHHHHHhcCCH
Q 010031 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG---TALVDMYAKCGNI 347 (520)
Q Consensus 271 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~ 347 (520)
+.-.|..++..++..+...+. +..-++.+|--....-+-+-..+.++.+-+ -.|...+ ..++.+|...|..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcch
Confidence 345677777777777766542 334455554444444444444444444322 2233222 3445555544432
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
.......+..+...|+-+.-.+++.++.+. -.|++.....+..+|.+.|+..++.+++.++-+
T Consensus 86 --------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 86 --------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 233455667777888888888888887652 367777778888888888888888888888763
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.91 E-value=10 Score=40.32 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=93.4
Q ss_pred CChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010031 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257 (520)
Q Consensus 178 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (520)
++++.|+.-+.++. ...|.-.++.--+.|.+.+|+.++.-=.+.-...|.+....+.....+++|.-.|+..-
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G 966 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCG 966 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc
Confidence 55666666665554 22344445555567777777776643222222334444444555566666666655543
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHH
Q 010031 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF--TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335 (520)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (520)
+ ..--+.+|...|+|.+|+.+-.++... -+.. +-..|..-+...++.-+|-++..+.... ..
T Consensus 967 k-----lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~ 1030 (1265)
T KOG1920|consen 967 K-----LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PE 1030 (1265)
T ss_pred c-----HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HH
Confidence 2 123456677788888888887766431 1221 2245666677777777777777665422 12
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC
Q 010031 336 ALVDMYAKCGNIEAASLVFGETKEK 360 (520)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~~ 360 (520)
..+..|++...+++|..+.....+.
T Consensus 1031 ~av~ll~ka~~~~eAlrva~~~~~~ 1055 (1265)
T KOG1920|consen 1031 EAVALLCKAKEWEEALRVASKAKRD 1055 (1265)
T ss_pred HHHHHHhhHhHHHHHHHHHHhcccc
Confidence 3455677778888888887766643
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.87 E-value=2.7 Score=35.64 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHHHhcCCCC
Q 010031 479 KDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 479 g~~~~A~~~~~~~~~~~p~ 497 (520)
+|.-.+...+++-.+++|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 4555555555555555553
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.22 Score=39.54 Aligned_cols=130 Identities=12% Similarity=0.141 Sum_probs=84.1
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcC
Q 010031 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213 (520)
Q Consensus 134 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 213 (520)
.++..+.+.+.+......++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcc
Confidence 36777888889999999999999877667788999999999999888999888883332 33345677778888
Q ss_pred ChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCCh
Q 010031 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277 (520)
Q Consensus 214 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 277 (520)
.++.+.-++.++...+. .+..+...++++.|.+.+.+.. +...|..++..+...+..
T Consensus 85 l~~~a~~Ly~~~~~~~~-----al~i~~~~~~~~~a~e~~~~~~--~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDE-----ALEILHKLKDYEEAIEYAKKVD--DPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp SHHHHHHHHHCCTTHTT-----CSSTSSSTHCSCCCTTTGGGCS--SSHHHHHHHHHHCTSTCT
T ss_pred hHHHHHHHHHHcccHHH-----HHHHHHHHccHHHHHHHHHhcC--cHHHHHHHHHHHHhcCcc
Confidence 88888777766543110 0001122233334433333332 356777787777666543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.72 E-value=6.6 Score=37.44 Aligned_cols=395 Identities=7% Similarity=-0.024 Sum_probs=191.7
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHH-HHhcCChhHHHHHhcc
Q 010031 111 QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM-YVQLGKTRGAFKVFDE 189 (520)
Q Consensus 111 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~ 189 (520)
.....+|+..... ...|...|..-+..+.+.+.+.+...+|..|.... +.++..|..-... |-....++.|+.+|.+
T Consensus 88 ~rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 4556666666542 44588888888888878888999999999999864 2344555444433 3334449999999988
Q ss_pred CCCCCCCCCchhHHHHHHHHHh----c-----------CCh----hHHHHHHhhCCCCCHH--HHHHH---HHHHHhcCC
Q 010031 190 TPEKNKSESVLLWNVLINGCSK----I-----------GYL----RKAVELFGMMPKKNVA--SWVSL---IDGFMRKGD 245 (520)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~~~~~----~-----------g~~----~~a~~~~~~~~~~~~~--~~~~l---~~~~~~~~~ 245 (520)
-++.+ +.++..|-...+.-.. . ++. +.....+.... ++.. .+... .+.......
T Consensus 166 gLR~n-pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~-~s~~~~~~~~k~~e~~~~~~~d~ 243 (568)
T KOG2396|consen 166 GLRFN-PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYA-NSVDIIKGAVKSVELSVAEKFDF 243 (568)
T ss_pred HhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhc-cchhhhhcchhhcchHHHHHHHH
Confidence 87763 3344444443332111 0 011 00000000000 1100 00000 000000000
Q ss_pred HHH-HHHHHhcCCC---CCcccHHHHHHHH----H---------------hCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010031 246 LKK-AGELFEQMPE---KGVVSWTAMINGF----S---------------QNGEAEKALAMFFQMLDAGVRANDFTVVSA 302 (520)
Q Consensus 246 ~~~-a~~~~~~~~~---~~~~~~~~l~~~~----~---------------~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 302 (520)
..+ -..+.+.+.. .++.+|.-+..-. . -..+.+....+|++.... .|+...+...
T Consensus 244 ~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~Y 321 (568)
T KOG2396|consen 244 LKELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECY 321 (568)
T ss_pred HHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHH
Confidence 000 0111111211 1233333222211 1 111233445667666653 5666666666
Q ss_pred HHHhhccC------ChHHHHHHHHHHHHcC-C-CCChhHHHHHHHHHHhcCCH-HHHHHHHhcCCCCChhHHHHHHHHHH
Q 010031 303 LSACAKVG------ALEAGVRVHNYISCND-F-GLKGAIGTALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLA 373 (520)
Q Consensus 303 ~~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~l~~~~~ 373 (520)
|..|...- .......+++...+.+ . +.....|..+.-.+...... +.|..+..+....+...|-.-++...
T Consensus 322 I~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~ 401 (568)
T KOG2396|consen 322 ITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLI 401 (568)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHH
Confidence 66664332 3334444555544332 1 22344555555555555443 33444444555556666555555444
Q ss_pred Hc-CCHHHH-HHHHHHHHHCCCCCCHHHHHHHHH-HHHccCcHHHHHHHHHHcHhhcCCCCChhH-HHHHHHHHhccCCh
Q 010031 374 IH-GRYEQA-IQYFKKMMYSGTEPDGTVFLAILT-ACWYSGQVKLALNFFDSMRFDYFIEPSVKH-HTVVVNLLSRVGQV 449 (520)
Q Consensus 374 ~~-~~~~~a-~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~ 449 (520)
.. .+.+-- ..++......-..+-...|+.... ......-.+.....+..+. .|+..+ -+.+++-+.+.|-.
T Consensus 402 ~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~-----~~~~~tl~s~~l~~~~e~~~~ 476 (568)
T KOG2396|consen 402 ESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVI-----GADSVTLKSKYLDWAYESGGY 476 (568)
T ss_pred hhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhc-----CCceeehhHHHHHHHHHhcch
Confidence 22 122111 122222322211222223333330 1111111222222222222 344443 34677777788888
Q ss_pred HHHHHHHhhCCC--CCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 450 DKALNFINKMPE--TPDFVIWGALFCA--CRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 450 ~~A~~~~~~~~~--~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.+|.+.+.++.. +|+...+..++.. -...-+...+..+|+.++.....++..|...-..-...|.++
T Consensus 477 ~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~e 547 (568)
T KOG2396|consen 477 KKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPE 547 (568)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcc
Confidence 888888888665 4566777777654 222334777888888888777788888877777766777765
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.59 E-value=7.1 Score=37.36 Aligned_cols=60 Identities=12% Similarity=0.062 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
-..+..++.+.|+.++|++.+++|.+....-| ......|+.++...+.+.++..++.+.-
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34466666778888888888888876421112 2267778888888888888888888764
|
The molecular function of this protein is uncertain. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.59 Score=35.61 Aligned_cols=84 Identities=12% Similarity=0.041 Sum_probs=62.0
Q ss_pred CCChhHHHHHHHHHhccCC---hHHHHHHHhhCCC--CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchh
Q 010031 430 EPSVKHHTVVVNLLSRVGQ---VDKALNFINKMPE--TPD--FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502 (520)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 502 (520)
.++..+--.+.+++.+..+ ..+-+.+++++.. .|+ ......|.-++.+.|+++++.++++..++.+|+|+++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 5666666778888887765 4455677777653 333 23444555678999999999999999999999999998
Q ss_pred HHHHhhhhhcc
Q 010031 503 SYCQTFMQQKG 513 (520)
Q Consensus 503 ~~l~~~~~~~g 513 (520)
..--.+.++..
T Consensus 109 ~Lk~~ied~it 119 (149)
T KOG3364|consen 109 ELKETIEDKIT 119 (149)
T ss_pred HHHHHHHHHHh
Confidence 87766666543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.18 E-value=20 Score=41.41 Aligned_cols=62 Identities=16% Similarity=-0.067 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 433 VKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
..+|....+...++|+++.|...+-.+.+..-+..+...+......|+...|+.++++.++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 46788888888889999999988877665434556667777789999999999999999965
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.15 E-value=3.9 Score=33.09 Aligned_cols=36 Identities=8% Similarity=0.101 Sum_probs=20.3
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHh
Q 010031 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187 (520)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 187 (520)
++.+.+.+++|+...+..+++.+.+.|++.....++
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 334444556666666666666666666655544444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.98 E-value=4.1 Score=32.94 Aligned_cols=99 Identities=7% Similarity=-0.029 Sum_probs=55.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhH----HHHHhcc
Q 010031 114 ISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG----AFKVFDE 189 (520)
Q Consensus 114 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~ 189 (520)
++.++-+.+.+++|+...+..+++.+.+.|++.. +..++..++-+|.......+-.+. +.... |.+++.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3455555667888888888889999888887654 444555565555544333322221 12222 3333333
Q ss_pred CCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCC
Q 010031 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226 (520)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 226 (520)
+.. .+..+++.+...|++-+|+++.+...
T Consensus 88 L~~--------~~~~iievLL~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 88 LGT--------AYEEIIEVLLSKGQVLEALRYARQYH 116 (167)
T ss_pred hhh--------hHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 321 23445555666666666666665543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=6.6 Score=35.29 Aligned_cols=220 Identities=11% Similarity=-0.011 Sum_probs=89.0
Q ss_pred CChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCCh----hHHHHHHHHhhhCCCCCCcccHHHHH
Q 010031 61 ASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHF----QSCISHFVFMLRLSVRPNRLTYPFVS 136 (520)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~A~~~~~~m~~~~~~p~~~~~~~ll 136 (520)
++..+....+..+...|..+-.-.+..-...++...-...+.++.+.|+. .++...+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 44555555555555555433222222222334554455555555555543 3455555555321 24444444444
Q ss_pred HHHhccCChhh--HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcC-
Q 010031 137 KSVASLSLLSL--GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG- 213 (520)
Q Consensus 137 ~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 213 (520)
.+++..+.... -....+.+...-..++..+-...+.++.+.++. .+...+-.+.+. ++...-...+.++.+.+
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~ 188 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAAFALNSNKY 188 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHHHHHhcCCC
Confidence 44444332110 011222222211223444555555555555542 344443333332 12233333333333322
Q ss_pred ChhHHHHHHhhCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010031 214 YLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289 (520)
Q Consensus 214 ~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 289 (520)
....+...+..+. .++..+-...+.++.+.++....-.+.+.+..++ .....+.++...|.. +|...+..+..
T Consensus 189 ~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 189 DNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred CCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 1223333332222 2455555555555555555332222222222222 122344444555543 34444444443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.98 E-value=6.2 Score=34.95 Aligned_cols=116 Identities=13% Similarity=0.083 Sum_probs=68.4
Q ss_pred HhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh-hHHH---HHHHHHHHcCCHHH
Q 010031 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL-LTWT---AMIWGLAIHGRYEQ 380 (520)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~---~l~~~~~~~~~~~~ 380 (520)
.....|++..+...|+........ +....-.++.+|...|+.+.|..++..+..... .-+. .-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345678888888888887765433 345556678888888888888888888775311 1111 12333333333333
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 381 AIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 381 a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
...+-++... .| |...-..+...+...|+.+.|.+.+-.+.
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333334333 45 34455556666777777777776554443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.92 E-value=5.7 Score=34.41 Aligned_cols=57 Identities=14% Similarity=0.026 Sum_probs=28.6
Q ss_pred HHHhCCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcC
Q 010031 270 GFSQNGEAEKALAMFFQMLDAG--VRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326 (520)
Q Consensus 270 ~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 326 (520)
.-.+.|++++|.+.|+.+.... -+-...+...++.++.+.++++.|....++..+..
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 3445555666666665555431 11123344444455555566666666555555443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.90 E-value=3.8 Score=34.81 Aligned_cols=23 Identities=9% Similarity=-0.097 Sum_probs=13.5
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCC
Q 010031 476 RTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 476 ~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
...+++.+|+.+|++.....-+|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 44666677777776665443333
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.73 E-value=14 Score=38.21 Aligned_cols=190 Identities=15% Similarity=-0.001 Sum_probs=100.8
Q ss_pred hccCChHHHHHHHHHHHHcCCCCChh-------HHHHHH-HHHHhcCCHHHHHHHHhcCCC--------CChhHHHHHHH
Q 010031 307 AKVGALEAGVRVHNYISCNDFGLKGA-------IGTALV-DMYAKCGNIEAASLVFGETKE--------KDLLTWTAMIW 370 (520)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~ 370 (520)
....++.+|..++.++...-..|+.. .++.+- ......|+++.|.++.+.... ..+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45667788888777765432222211 222221 223456788888777665443 35567777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHH--HHHccCcHH--HHHHHHHHcHhhcCC-C----CChhHHHH
Q 010031 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGT---VFLAILT--ACWYSGQVK--LALNFFDSMRFDYFI-E----PSVKHHTV 438 (520)
Q Consensus 371 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~--~~~~~g~~~--~a~~~~~~~~~~~~~-~----~~~~~~~~ 438 (520)
+..-.|++++|..+.+...+..-.-+.. .|..+.. .+...|... +....+......... . +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999998887765532222322 3333322 345566332 223333333221111 1 12234455
Q ss_pred HHHHHhcc-CChHHHHHHHhhCCC-CCCHH-H---HHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 010031 439 VVNLLSRV-GQVDKALNFINKMPE-TPDFV-I---WGALFCACRTHKDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 439 l~~~~~~~-g~~~~A~~~~~~~~~-~~~~~-~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 496 (520)
+..++.+. +...++..-++--.. .|.+. . +..++......|+.++|...+.++..+..
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 55555552 122222222222111 23322 1 22566778889999999999999876533
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.29 Score=28.70 Aligned_cols=28 Identities=18% Similarity=0.041 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 466 VIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
.+++.+...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777888888888888888888875
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.3 Score=35.44 Aligned_cols=134 Identities=12% Similarity=0.010 Sum_probs=76.7
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChh-HHHHH
Q 010031 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL-TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF-VRVHL 170 (520)
Q Consensus 93 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 170 (520)
.-..|...++ +.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-+. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3344554444 455667777777777777755322111 01111123456677777777777776644333322 11111
Q ss_pred --HHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC
Q 010031 171 --ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227 (520)
Q Consensus 171 --~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 227 (520)
.-.+...|.++.....++-+...+-+.-...-..|.-+..+.|++.+|.+.|.++..
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 223456777777777777766655344444555666667778888888888877765
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.45 E-value=1.9 Score=35.59 Aligned_cols=95 Identities=11% Similarity=-0.062 Sum_probs=58.8
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCc--ccHHHHHHHHhccCChhhHHHHHHHHHHhCCCC-Chh------
Q 010031 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR--LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY-DAF------ 165 (520)
Q Consensus 95 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~------ 165 (520)
..+..+...|++.|+.+.|++.|.++.+....|.. ..+..+|+.....+++..+.....+....--.+ |..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35666777788888888888888887775444433 245667777777788877777777665532211 111
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCC
Q 010031 166 VRVHLADMYVQLGKTRGAFKVFDETP 191 (520)
Q Consensus 166 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 191 (520)
+|..|. +...+++..|-+.|-+..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccC
Confidence 222222 334678888777776554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.42 E-value=11 Score=36.26 Aligned_cols=176 Identities=11% Similarity=0.068 Sum_probs=121.9
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010031 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406 (520)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 406 (520)
.|....-+++..+.......-...+..++.. .+-..|..++++|... ..+.-..+++++.+. ..|.+.+..-+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHH
Confidence 4555566788888888888888888887775 5667888999999988 557888999999884 4455555555555
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCC------hhHHHHHHHHHhccCChHHHHHHHhhCCCC----CCHHHHHHHHHHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPS------VKHHTVVVNLLSRVGQVDKALNFINKMPET----PDFVIWGALFCACR 476 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~ 476 (520)
+...++.+++..+|.++... +-|. ...|..+...- ..+.+....+..++..+ .-...+.-+..-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55559999999999998743 2331 12444444321 34566666666666542 22334455556677
Q ss_pred HcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 477 THKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 477 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
...++.+|++++..+++.+..|.-+...+...++.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 88999999999999999988877776665555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.39 Score=27.21 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=14.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKM 388 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~ 388 (520)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566666666666666666663
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.20 E-value=8.6 Score=34.68 Aligned_cols=112 Identities=15% Similarity=0.089 Sum_probs=52.6
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHH----HHHHHHHHhcCCHHH
Q 010031 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG----TALVDMYAKCGNIEA 349 (520)
Q Consensus 274 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~ 349 (520)
+|++.+|-..++++++. .+.|...+...=.+|.-.|+.+.-...++++... ..++...| ..+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 44555555555555543 2344444444445555555555555555555432 11222222 222233345556666
Q ss_pred HHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 010031 350 ASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKK 387 (520)
Q Consensus 350 a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 387 (520)
|.+.-++..+- |.-.-.+....+...|+..++.++..+
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 66555555442 222333444444555555555555443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.20 E-value=1.9 Score=38.23 Aligned_cols=77 Identities=17% Similarity=0.358 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHh----hcCCCCChhHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRF----DYFIEPSVKHHTV 438 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~ 438 (520)
++..++..+...|+.+.+...++++... .| +...|..++.+|.+.|+...|+..|+.+.. ..|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4555666666677777777777777663 33 445777777777777777777777766643 3566666665544
Q ss_pred HHHH
Q 010031 439 VVNL 442 (520)
Q Consensus 439 l~~~ 442 (520)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.17 E-value=3.7 Score=37.12 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccC--cHHHHHHHHHHcHhhcCCCCChhHHHHHHHHH
Q 010031 378 YEQAIQYFKKMMYSGTEPDGT--VFLAILTACWYSG--QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (520)
.+.++.+|+.+.+.|+..+.. ....++..+.... .+.++.++++.+. +.++++....|..++-.-
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCccccccccHHHHHH
Confidence 356778888888878776544 3333333322222 2557888888887 467888777776655433
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.16 E-value=7.4 Score=33.85 Aligned_cols=222 Identities=15% Similarity=0.137 Sum_probs=119.6
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHc---CC--CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHc-----CCCCChh
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDA---GV--RANDFTVVSALSACAKVGALEAGVRVHNYISCN-----DFGLKGA 332 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 332 (520)
+...++..+.+.|++++....|.+|+.- .+ .-+..+.+.++.......+.+....+++.-.+. +-..-..
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 3444566667777777777776666531 11 123455666666666666665555555433211 1111222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC---------------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKEK---------------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPD 396 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~ 396 (520)
+-..|...|...+.+.+..++++++... -...|..-|+.|...++-..-..+|++...-. --|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 3345667777777777777777665430 12467777888888888777778888765522 2333
Q ss_pred HHHHHHHHHHH-----HccCcHHHHHHHHHHcHhhcCC--CCC---hhHHHHHHHHHhccCC----hHHHHHHHhhCCCC
Q 010031 397 GTVFLAILTAC-----WYSGQVKLALNFFDSMRFDYFI--EPS---VKHHTVVVNLLSRVGQ----VDKALNFINKMPET 462 (520)
Q Consensus 397 ~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~ 462 (520)
+. ....|+-| .+.|.+++|-.-|-++.+.+.- .|. ..-|..|...+.+.|- .++|. -.+..
T Consensus 227 Pl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNd 301 (440)
T KOG1464|consen 227 PL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKND 301 (440)
T ss_pred hH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCC
Confidence 33 33444444 3567888776544443322221 222 1235566666666651 11111 11123
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010031 463 PDFVIWGALFCACRTHKDTKIAKIALQS 490 (520)
Q Consensus 463 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (520)
|.......++.+|.. ++..+-.+++..
T Consensus 302 PEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 556667778887754 455444444433
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.29 Score=26.23 Aligned_cols=32 Identities=16% Similarity=-0.126 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 467 IWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
.|..+...+...|+++.|...++++++..|++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 56677778888999999999999998888753
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=20 Score=38.62 Aligned_cols=256 Identities=14% Similarity=0.070 Sum_probs=151.4
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 010031 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298 (520)
Q Consensus 219 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 298 (520)
..+...+..++..+-...+..+.+.+..+....+...+..++...-...+.++...+........+..++.. +|...
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~V 700 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVV 700 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHH
Confidence 345555556888888888888887776554444555555555444444444444433221222333344432 55555
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCH
Q 010031 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378 (520)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 378 (520)
-...+.++...+..+ .. .+-...+ .++..+-...+.++.+.+..+. +......++...-...+.++...+..
T Consensus 701 R~~A~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 701 RAAALDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccc
Confidence 555566655443211 11 2222221 4566666667777776655433 33334456666666777777776654
Q ss_pred HH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHh
Q 010031 379 EQ-AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457 (520)
Q Consensus 379 ~~-a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (520)
+. +...+..+.+ .+|...-...+.++...|..+.+...+..+.. .++..+-...+.++.+.+. +++...+.
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 33 3455555554 56777777788888888876655454555543 4566666667788887775 45667776
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 458 KMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 458 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
.+...|+...-...+.++.+.+....+...+.++++
T Consensus 845 ~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 666678888777788888776434567778877776
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.88 E-value=4.6 Score=30.89 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 434 KHHTVVVNLLSRVGQVDKALNFINKMP--ETPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
.....-+..+...|+-+.-.++...+. .++++.....+..+|.+.|+..++.+++.++.+.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344556677778888888888887765 3688888888999999999999999999988764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.46 Score=26.33 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
+|..++.++...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666667777777777776666
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.49 E-value=22 Score=38.02 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=40.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (520)
+.+|...|+|.+|+.+..++.. .-+.. +-..|+.-+...++.-+|-++..+... .| ...+..|++.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s----d~-----~~av~ll~ka 1039 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS----DP-----EEAVALLCKA 1039 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc----CH-----HHHHHHHhhH
Confidence 3444555555555555544432 11111 124455556666666666666655542 12 1234445566
Q ss_pred CChHHHHHHHhhCC
Q 010031 447 GQVDKALNFINKMP 460 (520)
Q Consensus 447 g~~~~A~~~~~~~~ 460 (520)
..+++|..+.....
T Consensus 1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHHHhcc
Confidence 66777776666554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.47 E-value=10 Score=34.11 Aligned_cols=118 Identities=12% Similarity=0.129 Sum_probs=56.6
Q ss_pred HhcCCHHHHHHHHhcCCCC----CcccHHHHHHH-------HHhCC-ChhHHHHHHHHHHHc----C----CCCCH----
Q 010031 241 MRKGDLKKAGELFEQMPEK----GVVSWTAMING-------FSQNG-EAEKALAMFFQMLDA----G----VRAND---- 296 (520)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~-------~~~~~-~~~~a~~~~~~m~~~----~----~~p~~---- 296 (520)
.+.|+.+.|...+.++... ++.....+... ....+ ++++|..++++..+. + ..|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4567777777777766532 22222222222 23445 666776666665432 1 12222
Q ss_pred -HHHHHHHHHhhccCChH---HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 010031 297 -FTVVSALSACAKVGALE---AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359 (520)
Q Consensus 297 -~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (520)
.++..++.++...+..+ +|..+++.+... .+..+.++..-++.+.+.++.+.+.+++..|..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 23344555555555433 333344444322 222334443444555555666666666665554
|
It is also involved in sporulation []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.12 E-value=8.4 Score=32.43 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=13.8
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLD 289 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 289 (520)
||--+.+.+...|+.++|..+|+-...
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 444455555555555555555554443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.88 E-value=1.7 Score=38.55 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=77.6
Q ss_pred HhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC-CCc-----chHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCc
Q 010031 56 LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP-KNL-----HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129 (520)
Q Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 129 (520)
..|.+.+..+...++.......+++++...+-.++. ++. .+-..+++.+. .-++++++.++..=.+.|+-||.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 345566667777778777778899999888776654 221 12223344333 34778999999998999999999
Q ss_pred ccHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 010031 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159 (520)
Q Consensus 130 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 159 (520)
++++.+|+.+.+.+++.+|..+...|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.25 E-value=22 Score=35.79 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=37.4
Q ss_pred hcCCHHHHHHHHhcCCC-------C-CcccHHHHHHHHHhCC-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 010031 242 RKGDLKKAGELFEQMPE-------K-GVVSWTAMINGFSQNG-----EAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308 (520)
Q Consensus 242 ~~~~~~~a~~~~~~~~~-------~-~~~~~~~l~~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 308 (520)
...+.+.|..+|+.+.+ . .......+..+|.+.. +.+.|..++.+.-+.| .|+...+...+.-...
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGT 339 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCC
Confidence 34455555555555432 1 1334444555555432 3344555555555554 3333332222222222
Q ss_pred -cCChHHHHHHHHHHHHcC
Q 010031 309 -VGALEAGVRVHNYISCND 326 (520)
Q Consensus 309 -~~~~~~a~~~~~~~~~~~ 326 (520)
..+...|..+|....+.|
T Consensus 340 ~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred ccccHHHHHHHHHHHHHcC
Confidence 234455555555555554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.82 Score=25.17 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555566666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.14 E-value=2.7 Score=30.38 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 380 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
+..+-++.+....+-|++......+++|.+.+++..|.++++.++.+.+ +...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4556666677777889999999999999999999999999999986554 33336766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.03 E-value=44 Score=38.96 Aligned_cols=296 Identities=9% Similarity=0.019 Sum_probs=163.2
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCcccHHHHHHHHHhCCC
Q 010031 204 VLINGCSKIGYLRKAVELFGMMPK------KNVASWVSLIDGFMRKGDLKKAGELFEQ-MPEKGVVSWTAMINGFSQNGE 276 (520)
Q Consensus 204 ~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 276 (520)
.+..+-.+.+.+.+|..++++-.. .....+..+...|...+++|....+... ...+ .....+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhcc
Confidence 445566778889999999988422 1223455555588888888887777663 3332 33445556778899
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCCHHHHHHHHh
Q 010031 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-TALVDMYAKCGNIEAASLVFG 355 (520)
Q Consensus 277 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~ 355 (520)
+..|...|+.+...+ ++...+++.++......|.++...-..+-..... .+....+ +.=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999999874 4447788888888888888887777655544322 2222222 222334456667776666655
Q ss_pred cCCCCChhHHHHH--HHHHHHcC--CHHHHHHHHHHHHHCCCCC--------CH-HHHHHHHHHHHccCcHHHHHHHHHH
Q 010031 356 ETKEKDLLTWTAM--IWGLAIHG--RYEQAIQYFKKMMYSGTEP--------DG-TVFLAILTACWYSGQVKLALNFFDS 422 (520)
Q Consensus 356 ~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~~~~p--------~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 422 (520)
..+..+|... +..+.+.. +.-.-....+.+++.-+.| +. ..|..++....- -+.+.-.+.+
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l-~el~~~~~~l-- 1616 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL-LELENSIEEL-- 1616 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH-HHHHHHHHHh--
Confidence 3444555444 33333222 2222222333333321221 10 123333322111 1111111111
Q ss_pred cHhhcCCCCChh------HHHHHHHHHhccCChHHHHHHHhh------CCC---CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010031 423 MRFDYFIEPSVK------HHTVVVNLLSRVGQVDKALNFINK------MPE---TPDFVIWGALFCACRTHKDTKIAKIA 487 (520)
Q Consensus 423 ~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~------~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 487 (520)
.+..++.. .|-.-+..=....+..+-+-.+++ |.. ..-..+|....+..+..|.++.|...
T Consensus 1617 ----~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1617 ----KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred ----hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 12233221 111111111111122222222222 111 12345788888889999999999999
Q ss_pred HHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 488 LQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 488 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+-++.+.. -|.++...+..+.+.||..
T Consensus 1693 ll~A~e~r--~~~i~~E~AK~lW~~gd~~ 1719 (2382)
T KOG0890|consen 1693 LLNAKESR--LPEIVLERAKLLWQTGDEL 1719 (2382)
T ss_pred HHhhhhcc--cchHHHHHHHHHHhhccHH
Confidence 99988776 5688888899999998864
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.93 E-value=7.4 Score=30.60 Aligned_cols=51 Identities=8% Similarity=-0.120 Sum_probs=39.1
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHccCcHHHHHHHHHHcHh
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLA-ILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
...++.+++..++..|.- ++|+..-... -...+...|++++|.++++.+..
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 357899999999999988 6776652222 23346789999999999999975
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.62 E-value=18 Score=33.84 Aligned_cols=63 Identities=11% Similarity=0.030 Sum_probs=48.1
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHhhCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPETP------DFVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
....+|..++..+.+.|+++.|...+.++.... .+......+......|+..+|+..++..++
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334577888888889999999988888876421 455556666778888999999998888887
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.03 E-value=0.43 Score=26.63 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHhccCChHHH
Q 010031 433 VKHHTVVVNLLSRVGQVDKA 452 (520)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A 452 (520)
...|+.+..+|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 34444555555555555444
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=89.00 E-value=29 Score=35.52 Aligned_cols=205 Identities=10% Similarity=-0.047 Sum_probs=103.1
Q ss_pred hCCChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 010031 273 QNGEAEKALAMFFQMLDAG-VRANDF--TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349 (520)
Q Consensus 273 ~~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 349 (520)
...+.+.|..++....... ..+... ....+.......+..+.+...+....... .+......-+..-...++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHH
Confidence 3445678888888765443 222221 22223222233322455555555433221 244444444555557888888
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHH--HHcH
Q 010031 350 ASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF--DSMR 424 (520)
Q Consensus 350 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~--~~~~ 424 (520)
+...+..|.. ....-..-+..++...|+.++|..+|+++.. ..+ .|..|.. .+.|..-. ...- ..-.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa--~~Lg~~~~-~~~~~~~~~~ 402 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAA--QRLGEEYP-LKIDKAPKPD 402 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHH--HHcCCCCC-CCCCCCCchh
Confidence 8888888764 1223344566776778888888888888743 112 2222221 11221100 0000 0000
Q ss_pred hhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010031 425 FDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSS 491 (520)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 491 (520)
.. +.... --.-+..+...|+...|...+..+....+......+.......|..+.++....+.
T Consensus 403 ~~--~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 403 SA--LTQGP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred hh--hccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 00 00000 01233445566777777777766555455555555555566677777776665543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.90 E-value=11 Score=36.96 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=78.9
Q ss_pred HhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHH
Q 010031 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320 (520)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (520)
.-.|+++.|..++..+.++ ..+.++..+-+.|-.++|+++ .+|+..- .....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHH
Confidence 3456666666666555532 233444555556655555443 2222111 122345666666666554
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010031 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400 (520)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 400 (520)
+. .+..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |
T Consensus 662 e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N---- 725 (794)
T KOG0276|consen 662 EA------NSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N---- 725 (794)
T ss_pred hh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c----
Confidence 32 2445566677777777777777766655442 444555555556655444444444444321 1
Q ss_pred HHHHHHHHccCcHHHHHHHHHHc
Q 010031 401 LAILTACWYSGQVKLALNFFDSM 423 (520)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~~ 423 (520)
....++...|+++++.+++.+-
T Consensus 726 -~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 -LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -hHHHHHHHcCCHHHHHHHHHhc
Confidence 1222345567777766666554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.85 E-value=0.36 Score=39.50 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=59.3
Q ss_pred HHHhccCChHHHHHHHhhCCC--CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 441 NLLSRVGQVDKALNFINKMPE--TP-----DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
.-+.+.|++++|..-|..+.. ++ ....|..-..++.+.+.++.|+.-..++++++|.+..++...+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 445688999999988887654 21 22345555667889999999999999999999999999999999998775
Q ss_pred C
Q 010031 514 D 514 (520)
Q Consensus 514 ~ 514 (520)
.
T Consensus 183 k 183 (271)
T KOG4234|consen 183 K 183 (271)
T ss_pred h
Confidence 4
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.70 E-value=4.4 Score=28.98 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
+.-++.+-++.+....+-|++......+++|.+.+|+..|.++++.++.+.+ .+..+|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3445666667777777889999999999999999999999999998875443 24445655543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=88.68 E-value=0.7 Score=25.09 Aligned_cols=31 Identities=10% Similarity=-0.064 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHhcCCCCCcchhHHHHhhh
Q 010031 479 KDTKIAKIALQSSCSLNLSIPQAMSYCQTFM 509 (520)
Q Consensus 479 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 509 (520)
|+.+.|..+|++++...|.++..|...+.+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5788999999999999999998887766543
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.66 E-value=29 Score=34.96 Aligned_cols=175 Identities=14% Similarity=0.097 Sum_probs=101.8
Q ss_pred hhhHHHHHHHHHHhCCCCChhHHHHHH----HH-HHhcCChhHHHHHhccCCC-------CCCCCCchhHHHHHHHHHhc
Q 010031 145 LSLGRGLHCLIVKSGVEYDAFVRVHLA----DM-YVQLGKTRGAFKVFDETPE-------KNKSESVLLWNVLINGCSKI 212 (520)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~-~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 212 (520)
...+...++...+.|. ......+. .+ +....|++.|+..|+...+ .| .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4567888888877763 22222222 22 4467789999999988765 44 445666777777764
Q ss_pred C-----ChhHHHHHHhhCCC---CCHHHHHHHHHHHHh-cCCHHHHHHHHhcCCCCC-cccHHHHHHHHH----hCCChh
Q 010031 213 G-----YLRKAVELFGMMPK---KNVASWVSLIDGFMR-KGDLKKAGELFEQMPEKG-VVSWTAMINGFS----QNGEAE 278 (520)
Q Consensus 213 g-----~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~ 278 (520)
. +.+.|+.++....+ |+.......+..... ..+...|.++|......+ +.++-.+..+|. ...+..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 3 56678888877665 333333322222222 245678888888877655 333333333332 223567
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCC
Q 010031 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327 (520)
Q Consensus 279 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 327 (520)
.|..++++.-+.| .|...--...+..+.. +..+.+.-.+..+.+.|.
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 7888888888777 4433333333334444 666666666665555543
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=88.53 E-value=7.4 Score=28.04 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=33.3
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 010031 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299 (520)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 299 (520)
..+...|++++|..+.+....||...|.+|-. -+.|..+++..-+.+|..+| .|...+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34455666666666666666666666655432 34555555555565666555 4444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.53 E-value=31 Score=35.17 Aligned_cols=102 Identities=8% Similarity=-0.016 Sum_probs=61.8
Q ss_pred HHHHHhCCChhHHHHHHHHhhhCCCCCC---cccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010031 101 IRGLAENSHFQSCISHFVFMLRLSVRPN---RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177 (520)
Q Consensus 101 i~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (520)
+..+.+.+.+++|++.-+.-.. ..|. .......|..+...|++++|-...-.|.. .+..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 5567778888888887765543 3332 23455566777777888888777766654 3555566566666665
Q ss_pred CChhHHHHHhccCCCCCCCCCchhHHHHHHHHHh
Q 010031 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211 (520)
Q Consensus 178 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 211 (520)
++.... +.-+.......+...|..++..+..
T Consensus 437 ~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 555443 3333333223456677777776666
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.33 E-value=5.3 Score=35.44 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010031 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLD 289 (520)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 289 (520)
++..++..+...|+.+.+.+.++++...+ ...|..++.+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 44555555666666666666555554432 34566666666666666666666555543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.29 E-value=6.8 Score=38.26 Aligned_cols=153 Identities=18% Similarity=0.106 Sum_probs=83.4
Q ss_pred HhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 010031 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254 (520)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 254 (520)
.-.|+++.|..++-.+. ....+.++..+.+.|..++|+++-. |... -.....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~-----D~d~---rFelal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELST-----DPDQ---RFELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCC-----Chhh---hhhhhhhcCcHHHHHHHHH
Confidence 34566666655544433 1233445555566666666655421 2111 1122345677777766654
Q ss_pred cCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHH
Q 010031 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334 (520)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 334 (520)
+.. +..-|..|.++..+.|++..|.+.|....+ +..|+-.+...|+-+....+-....+.|. .
T Consensus 662 e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~----- 724 (794)
T KOG0276|consen 662 EAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N----- 724 (794)
T ss_pred hhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----
Confidence 432 345577777777777777777777766543 23444455556666555555555555543 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC
Q 010031 335 TALVDMYAKCGNIEAASLVFGETKE 359 (520)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (520)
|.-..+|...|+++++.+++.+-.+
T Consensus 725 N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 725 NLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred chHHHHHHHcCCHHHHHHHHHhcCc
Confidence 2223345667777777777765543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.20 E-value=1.6 Score=35.45 Aligned_cols=25 Identities=8% Similarity=-0.173 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 481 TKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 481 ~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
+++|...|+++...+|+|......|
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 3445555555555556555444443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.69 E-value=0.6 Score=41.66 Aligned_cols=75 Identities=16% Similarity=0.071 Sum_probs=62.6
Q ss_pred HHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 440 VNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.+-|.++|++++|+..+.+... .| +++++..-..+|.+...+..|+.-.+.++.++-....+|...+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 4568899999999999988554 56 888888889999999999999999999999888777777777776666655
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.38 E-value=9.5 Score=34.25 Aligned_cols=120 Identities=18% Similarity=0.135 Sum_probs=57.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-hHHHHHHHHH
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT---VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLL 443 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 443 (520)
|.-+-.+.|+..+|.+.++.+.+. .|-.. .-..|+.+|....-+.+...++.+.- +-..+.+. ..|.+- +
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD-dislPkSA~icYTaA---L 354 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD-DISLPKSAAICYTAA---L 354 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCcchHHHHHHHH---H
Confidence 333444566777777777666553 22111 33455666665555555555544432 11122221 122211 1
Q ss_pred hccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHh
Q 010031 444 SRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQT 507 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 507 (520)
. ++..+-++. .|+..+-..+-.+ --.|.+.+.++++.+|.-|..+..+-.
T Consensus 355 L------K~RAVa~kF--spd~asrRGLS~A------E~~AvEAihRAvEFNPHVPkYLLE~ks 404 (556)
T KOG3807|consen 355 L------KTRAVSEKF--SPETASRRGLSTA------EINAVEAIHRAVEFNPHVPKYLLEMKS 404 (556)
T ss_pred H------HHHHHHhhc--CchhhhhccccHH------HHHHHHHHHHHhhcCCCCcHHHHHHHh
Confidence 1 122222222 2333322222211 134788999999999998887665543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.75 E-value=40 Score=34.46 Aligned_cols=170 Identities=17% Similarity=0.200 Sum_probs=82.6
Q ss_pred HHHHHhcCChhHHHHHhccCCCCCCCC---CchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHH
Q 010031 171 ADMYVQLGKTRGAFKVFDETPEKNKSE---SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247 (520)
Q Consensus 171 ~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 247 (520)
++.+.+.+.+++|+++.+..... .| ....+...+..+...|++++|-...-.|...+..-|..-+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 44555666777777766655433 22 23345556666666777777777666666666666655555555555544
Q ss_pred HHHHHHhcCCC-CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcC
Q 010031 248 KAGELFEQMPE-KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326 (520)
Q Consensus 248 ~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 326 (520)
....++-.-.. -+...|..++..+.. .+.. -|.+.... -+++...-..++++.. .+..+.
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~----~F~e~i~~-Wp~~Lys~l~iisa~~------------~q~~q~- 501 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK----GFLELIKE-WPGHLYSVLTIISATE------------PQIKQN- 501 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH-HHHH----HHHHHHHh-CChhhhhhhHHHhhcc------------hHHHhh-
Confidence 43332222111 123455555555544 1111 11122111 1122111111111110 001100
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh
Q 010031 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362 (520)
Q Consensus 327 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 362 (520)
.-+...-..|+..|...++++.|...+-.+..+++
T Consensus 502 -Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 502 -SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred -ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 11112233477788888888888888877776543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.62 E-value=1.3 Score=24.38 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
+|..+...+...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777776665
|
... |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.60 E-value=2.5 Score=37.50 Aligned_cols=71 Identities=11% Similarity=-0.102 Sum_probs=52.0
Q ss_pred HHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHH
Q 010031 436 HTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 506 (520)
.+.+-.+|.+.++++.|+++.+.+.. +.++.-+.--...|.+.|.+..|..-++..++..|++|.+-....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 34566677788888888888887654 345666776777788888888888888888888888877655433
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.49 E-value=19 Score=30.49 Aligned_cols=125 Identities=10% Similarity=0.029 Sum_probs=78.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVV 439 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 439 (520)
.+.-++.+.+.+..++++...++-++. +|... .-..++..++-.|++++|..-++-..+ +.|+ ..+|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHH
Confidence 445567778889999999998887774 55444 667788889999999999988877653 2443 4556665
Q ss_pred HHHHhccCChHHHH-HHHhhCCCC----CCHHHHHHHH-HH--HHHcCCHHHHHHHHHHHhcCCCCCcch
Q 010031 440 VNLLSRVGQVDKAL-NFINKMPET----PDFVIWGALF-CA--CRTHKDTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 440 ~~~~~~~g~~~~A~-~~~~~~~~~----~~~~~~~~l~-~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
+.+ +.+. ++|.--..+ .....|...+ .+ +...|..+.+..+-+.+++..|..+..
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~ 141 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGH 141 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcc
Confidence 543 2222 233322111 1233454444 33 333445555677777788877765554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.99 E-value=20 Score=30.31 Aligned_cols=158 Identities=14% Similarity=0.063 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh-hHHHHHHH--HHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHH
Q 010031 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDL-LTWTAMIW--GLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTA 406 (520)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~ 406 (520)
+.+||.+.-.+...|+++.|.+.|+...+-|+ .-|..+-+ ++.-.|++.-|.+-+...-+... .|-...|..+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E- 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE- 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-
Confidence 45667676667777777777777777666332 12222211 22335677777666655554321 122223333222
Q ss_pred HHccCcHHHHHHHHH-HcHhhcCCCCChhHHHH-HHHHHhccCChHHHHHHHhhCCCC------CCHHHHHHHHHHHHHc
Q 010031 407 CWYSGQVKLALNFFD-SMRFDYFIEPSVKHHTV-VVNLLSRVGQVDKALNFINKMPET------PDFVIWGALFCACRTH 478 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~l~~~~~~~ 478 (520)
..-++.+|..-+. +.. ..|..-|.. ++..|.-.=..+.+.+-....... --..||..+..-+...
T Consensus 178 --~k~dP~~A~tnL~qR~~-----~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 178 --QKLDPKQAKTNLKQRAE-----KSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred --hhCCHHHHHHHHHHHHH-----hccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2334455544333 222 122222222 222222111122222222221110 1123566666667778
Q ss_pred CCHHHHHHHHHHHhcCCC
Q 010031 479 KDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 479 g~~~~A~~~~~~~~~~~p 496 (520)
|+.++|..+|+-++..+-
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 888888888877766443
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.81 E-value=51 Score=34.80 Aligned_cols=28 Identities=11% Similarity=0.136 Sum_probs=24.7
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhhh
Q 010031 95 HIFNVLIRGLAENSHFQSCISHFVFMLR 122 (520)
Q Consensus 95 ~~~~~li~~~~~~~~~~~A~~~~~~m~~ 122 (520)
.-|..|+..|...|+.++|+++|.+...
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 3488899999999999999999999876
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.75 E-value=45 Score=34.15 Aligned_cols=162 Identities=10% Similarity=0.090 Sum_probs=80.5
Q ss_pred HHHHHHHHHHh-cCCChHHHHHHhcccCC----CCcc-----hHHHHHHHHHhCCChhHHHHHHHHhhhCCCC----CCc
Q 010031 64 RITTQLISSAS-LHKSIDYALSIFDHFTP----KNLH-----IFNVLIRGLAENSHFQSCISHFVFMLRLSVR----PNR 129 (520)
Q Consensus 64 ~~~~~l~~~~~-~~~~~~~A~~~~~~~~~----~~~~-----~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~----p~~ 129 (520)
.++-.+...+. ...+++.|...+++... ++.. +...++..+.+.+... |...+++..+.--. +-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 44445555555 56788888887775421 1111 2223455555555444 77777776653111 111
Q ss_pred ccHHHH-HHHHhccCChhhHHHHHHHHHHhC---CCCChhHHHHHHHHHH--hcCChhHHHHHhccCCCC---------C
Q 010031 130 LTYPFV-SKSVASLSLLSLGRGLHCLIVKSG---VEYDAFVRVHLADMYV--QLGKTRGAFKVFDETPEK---------N 194 (520)
Q Consensus 130 ~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~---------~ 194 (520)
..|..+ +..+...++...|.+.++.+...- ..|-..++-.++.+.. +.+..+++.+.++++... .
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 122222 112222367777888777776543 2233334444444433 345455555555444211 1
Q ss_pred CCCCchhHHHHHHHH--HhcCChhHHHHHHhhCC
Q 010031 195 KSESVLLWNVLINGC--SKIGYLRKAVELFGMMP 226 (520)
Q Consensus 195 ~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~ 226 (520)
..|...+|..+++.+ ...|+++.+...++++.
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234455666666544 34666666666655544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.45 E-value=36 Score=32.80 Aligned_cols=390 Identities=10% Similarity=0.089 Sum_probs=195.4
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCC-CCCCcccHHHHHH-HHhccCChhhHHHHHHHHHHhCCCCChhHHHH
Q 010031 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSK-SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169 (520)
Q Consensus 92 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 169 (520)
.|+..|...+..+.+.+.+.+.-.+|.+|.... -.|| .|..... -|....+++.|+.+|...++.+. .++..|-.
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~d--LWI~aA~wefe~n~ni~saRalflrgLR~np-dsp~Lw~e 179 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPD--LWIYAAKWEFEINLNIESARALFLRGLRFNP-DSPKLWKE 179 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCch--hHHhhhhhHHhhccchHHHHHHHHHHhhcCC-CChHHHHH
Confidence 488999999998888888999999999999842 2333 3332222 23344459999999998888652 23333322
Q ss_pred HHHH---HHh------------cCCh----hHHHHHhccC-CC----CCCCCCchhHHHHHHHHHhcCCh----------
Q 010031 170 LADM---YVQ------------LGKT----RGAFKVFDET-PE----KNKSESVLLWNVLINGCSKIGYL---------- 215 (520)
Q Consensus 170 l~~~---~~~------------~g~~----~~a~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~~g~~---------- 215 (520)
..+. |.. .++. +.....+... .. .+..+... .......-..++.
T Consensus 180 yfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e--~~~~~~~d~~kel~k~i~d~~~~ 257 (568)
T KOG2396|consen 180 YFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVE--LSVAEKFDFLKELQKNIIDDLQS 257 (568)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcc--hHHHHHHHHHHHHHHHHHHHHhc
Confidence 2221 110 0011 0000000000 00 00001110 0000000000000
Q ss_pred ----------hHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC--CcccHHHHHHHHHh------CCCh
Q 010031 216 ----------RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK--GVVSWTAMINGFSQ------NGEA 277 (520)
Q Consensus 216 ----------~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~------~~~~ 277 (520)
+.|.+.++-..+.+...+...-....-..+.+....+|++..++ ....|+..|..|.. ....
T Consensus 258 ~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I 337 (568)
T KOG2396|consen 258 KAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRI 337 (568)
T ss_pred cCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 11111111111111111222222222223344455666665543 22345555554432 2234
Q ss_pred hHHHHHHHHHHHcC-CCC-CHHHHHHHHHHhhccCChH-HHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-CCHHHH-HH
Q 010031 278 EKALAMFFQMLDAG-VRA-NDFTVVSALSACAKVGALE-AGVRVHNYISCNDFGLKGAIGTALVDMYAKC-GNIEAA-SL 352 (520)
Q Consensus 278 ~~a~~~~~~m~~~~-~~p-~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~ 352 (520)
.....+++.....+ ..+ ....|..+.-.++...... .|..+. ..++..+...|..-+...... .+++-. .+
T Consensus 338 ~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~----~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~ 413 (568)
T KOG2396|consen 338 LHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLT----TELFRDSGKMWQLKLQVLIESKSDFQMLFEE 413 (568)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhh----HHHhcchHHHHHHHHHHHHhhcchhHHHHHH
Confidence 45556666655432 333 3345555555555544332 233332 223344555555444444422 122211 12
Q ss_pred HHhcCCC----CChhHHHHHHHHHHHcCC-HHHH--HHHHHHHHHCCCCCCHHHH-HHHHHHHHccCcHHHHHHHHHHcH
Q 010031 353 VFGETKE----KDLLTWTAMIWGLAIHGR-YEQA--IQYFKKMMYSGTEPDGTVF-LAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 353 ~~~~~~~----~~~~~~~~l~~~~~~~~~-~~~a--~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
.+..+.+ +....|+... .|+ .+.. ..++...... ..|+..++ +.++.-+...|-+.+|...+..+.
T Consensus 414 l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~ 487 (568)
T KOG2396|consen 414 LFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQ 487 (568)
T ss_pred HHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHH
Confidence 2222222 3334555544 222 2211 1233333333 35566543 566777888999999999999987
Q ss_pred hhcCCCCChhHHHHHHHHH---hccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-CCCCC
Q 010031 425 FDYFIEPSVKHHTVVVNLL---SRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCS-LNLSI 498 (520)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~ 498 (520)
.. -+|+...|..++..- ..+| ..-+.++++.+.. -.|+..|...+.--...|..+.+-.++.++.+ ++|..
T Consensus 488 ~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 488 EL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred hC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 52 256777887777543 2344 7778888888765 36888999888887899999999999988886 56654
Q ss_pred c
Q 010031 499 P 499 (520)
Q Consensus 499 ~ 499 (520)
.
T Consensus 565 ~ 565 (568)
T KOG2396|consen 565 A 565 (568)
T ss_pred h
Confidence 4
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=85.29 E-value=8.1 Score=36.59 Aligned_cols=121 Identities=12% Similarity=0.018 Sum_probs=81.5
Q ss_pred HHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHH
Q 010031 373 AIHGRYEQAI-QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451 (520)
Q Consensus 373 ~~~~~~~~a~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 451 (520)
...|+...|- +++.-++...-.|+.......| ....|+++.+...+..... -+.....+...+++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 3456666554 4555555544456655444333 4578899998888887753 234555677788888889999999
Q ss_pred HHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 010031 452 ALNFINKMPET--PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 452 A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 497 (520)
|...-+.|... .++.............|-++++...|++.+.++|.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 98888877641 33444444444566778889999999999888764
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.23 E-value=2.2 Score=37.77 Aligned_cols=49 Identities=14% Similarity=0.022 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 468 WGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 468 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.+.+-.+|.+.++++.|..+.+.++.+.|++|.-+...|.+|.+.|-..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~ 232 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEH 232 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Confidence 4556677999999999999999999999999999999999999988754
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.14 E-value=2.6 Score=24.43 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
+++.+...|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 456666666666666666666666543
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=84.98 E-value=35 Score=32.19 Aligned_cols=164 Identities=13% Similarity=0.119 Sum_probs=105.1
Q ss_pred cCCHHHHHHHHhcCCC----CChhHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCcHH
Q 010031 344 CGNIEAASLVFGETKE----KDLLTWTAMIWG-LAIHGRYEQAIQYFKKMMYSGTEPDGT----VFLAILTACWYSGQVK 414 (520)
Q Consensus 344 ~~~~~~a~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~ 414 (520)
.|+.+++.+.+..+.. +....+-.|+.+ .....++..|+.+|+..+- .-|-.. ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888888888887765 244556666655 3456788999999998765 345432 4444455667889998
Q ss_pred HHHHHHHHcHhhcCCCCChhHHH-HHHHHHhccC---ChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010031 415 LALNFFDSMRFDYFIEPSVKHHT-VVVNLLSRVG---QVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQS 490 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (520)
+...+-......+...|-..-|. .+..++.+.+ +.+.-..++..|...-....|..+...-...|+.+-|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88887777665554445443332 3333444433 3444555555555333355788888888899999999999999
Q ss_pred HhcCCCCCcchhHHHHhhhh
Q 010031 491 SCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 491 ~~~~~p~~~~~~~~l~~~~~ 510 (520)
++.+.+ ....-...+.+|.
T Consensus 283 A~~L~~-~~~~~~~ra~LY~ 301 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYR 301 (421)
T ss_pred HHHhcc-CCCcchHHHHHHH
Confidence 988763 3344444444443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.59 E-value=2.1 Score=41.42 Aligned_cols=101 Identities=15% Similarity=0.062 Sum_probs=76.3
Q ss_pred ccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 010031 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKI 486 (520)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 486 (520)
..|+...|...+...........++ ..-.|...+.+.|-..+|..++..... ...+.++..+.+++....+.++|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v-~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDV-PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcc-cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 4688899999888876433222233 334577777888888888888876543 3456677888899999999999999
Q ss_pred HHHHHhcCCCCCcchhHHHHhhhh
Q 010031 487 ALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 487 ~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
.++.+++++|+++.+-..|..+-.
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999998777655543
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.07 E-value=19 Score=36.34 Aligned_cols=191 Identities=14% Similarity=0.171 Sum_probs=96.5
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----------HHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChh
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF----------TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 332 (520)
+...++-.|....+++..+++.+.++. .||.. .|...+.--.+-|+-++|....-.+.+..-...+.
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 445566667777778888888777765 23321 12222333334567777777766665543333332
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHc
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV---FLAILTACWY 409 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~ 409 (520)
.| |-+|++ |++|- +-+.|...+..+.|.+.|++..+ +.|+..+ +..|+.+
T Consensus 280 m~-------Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a--- 332 (1226)
T KOG4279|consen 280 MY-------CLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA--- 332 (1226)
T ss_pred ee-------eeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH---
Confidence 22 223321 11111 11223445566778888888777 6776552 3333332
Q ss_pred cCc-HHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010031 410 SGQ-VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIAL 488 (520)
Q Consensus 410 ~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 488 (520)
.|. ++...++-.- =..|-..+.+.|.++.-.++|+-. ..+.+-.-.+|+.+|.+..
T Consensus 333 aG~~Fens~Elq~I-------------gmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 333 AGEHFENSLELQQI-------------GMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAA 389 (1226)
T ss_pred hhhhccchHHHHHH-------------HHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHH
Confidence 222 2222221110 012333455667666666665532 1333334456777777777
Q ss_pred HHHhcCCCCCcchhHHHH
Q 010031 489 QSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 489 ~~~~~~~p~~~~~~~~l~ 506 (520)
+.+++++|...-.-..+.
T Consensus 390 e~mfKLk~P~WYLkS~me 407 (1226)
T KOG4279|consen 390 EMMFKLKPPVWYLKSTME 407 (1226)
T ss_pred HHHhccCCceehHHHHHH
Confidence 777777765544443333
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.93 E-value=11 Score=31.44 Aligned_cols=73 Identities=18% Similarity=0.078 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHc---CCCCChhHHHHHHHHHHhcCCHHHHH
Q 010031 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN---DFGLKGAIGTALVDMYAKCGNIEAAS 351 (520)
Q Consensus 278 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 351 (520)
+.|.+.|-++...+..-++.....+...|. ..+.+++..++....+. +-.+++..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456666666666654444444444443333 55667777776666542 22566777777777777777776663
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.91 E-value=6.6 Score=35.01 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
++++++.++..=+.-|+-||..++..++..+.+.+++.+|..+.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666555544
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.75 E-value=2 Score=22.09 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=7.6
Q ss_pred HHHHHhccCChHHHHHHH
Q 010031 439 VVNLLSRVGQVDKALNFI 456 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~ 456 (520)
+..++...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444444444444433
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.62 E-value=8.6 Score=27.55 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 010031 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339 (520)
Q Consensus 279 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (520)
++.+-+..+....+.|++......+++|.+.+++..|.++++-+..+- ..+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 455556666666788888888888888888888888888888776332 123445555443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.35 E-value=34 Score=30.01 Aligned_cols=118 Identities=13% Similarity=0.135 Sum_probs=64.6
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHhhccCChHHHHHHHHHHHHc---CC--CCChhHHHHHHHHHHhc
Q 010031 273 QNGEAEKALAMFFQMLDAGVRAND---FTVVSALSACAKVGALEAGVRVHNYISCN---DF--GLKGAIGTALVDMYAKC 344 (520)
Q Consensus 273 ~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~ 344 (520)
+..++++|+.-|++.++....-.. .....++....+.+++++....+.++... .+ ..+....|++++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 344688888888888775322223 34455677788888888888888776431 11 12334455566555555
Q ss_pred CCHHHHHHHHhcCCC-----CChh----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010031 345 GNIEAASLVFGETKE-----KDLL----TWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (520)
Q Consensus 345 ~~~~~a~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 390 (520)
.+.+--.++++.-.. +|.. +-.-|...|...+.+....++++++..
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 555444444432221 1111 223445555555555555555555544
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.88 E-value=7.3 Score=28.23 Aligned_cols=46 Identities=7% Similarity=-0.016 Sum_probs=25.4
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHh
Q 010031 113 CISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158 (520)
Q Consensus 113 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 158 (520)
...-++.+...++.|++......+++|.+.+++..|.++++.++..
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444444555556666666666666666666666666666665543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.86 E-value=28 Score=30.80 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=33.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH-------HHHHHhhccCChHHHHH
Q 010031 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV-------SALSACAKVGALEAGVR 317 (520)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------~l~~~~~~~~~~~~a~~ 317 (520)
.+.+-..+.+++++|+..+.+++..|+..+..+.+ .+...|...|+.....+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 34556677788888888888888888777765543 34444555555444333
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=81.74 E-value=27 Score=33.07 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=34.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--ccCcHHHHHHHHHHcHh
Q 010031 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACW--YSGQVKLALNFFDSMRF 425 (520)
Q Consensus 371 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 425 (520)
.+...+++..|.++++.+... +.++.. .+..+..+|. ..-++.+|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344677888888888887775 444443 4445555443 45667778877777653
|
|
| >cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH | Back alignment and domain information |
|---|
Probab=81.59 E-value=4.7 Score=32.79 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=20.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 473 CACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
..|.+.|.+++|.+++++..+ +|++...-..|..+..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHc
Confidence 345566666666666666655 55555554444444443
|
Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=81.53 E-value=47 Score=31.20 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=36.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-ccCChHHHHHHHHHHH
Q 010031 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA-KVGALEAGVRVHNYIS 323 (520)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 323 (520)
.+..+.+.|-+..|+++.+-+......-|+.....+|+.|+ +.++++-..++.+...
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 44566777777778777777777654446666666666654 5566665555555443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=81.20 E-value=7.3 Score=30.57 Aligned_cols=63 Identities=13% Similarity=-0.060 Sum_probs=48.0
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 449 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.+.|.++.+-|- ...............|++.-|.++.+.++..+|+|..+....+.++.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 456777777765 334444555667789999999999999999999999999999999998876
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.4 bits (134), Expect = 2e-08
Identities = 18/178 (10%), Positives = 55/178 (30%), Gaps = 8/178 (4%)
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
+ P + + L + + ++ + + + +
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 180 TRGAFKVFD---ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVAS 232
A + +K K ++ ++N ++ G ++ G ++ V + M+ ++ S
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 233 WVSLIDGFMRKGDLKKAGE-LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
+ + + R+ E EQM ++G+ + L ++
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.0 bits (115), Expect = 3e-06
Identities = 12/96 (12%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKG-------VVSWTAMINGFSQNGEAEKAL 281
++ + L A L + + + A++ G+++ G ++ +
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
+ F + DAG+ + + +AL + +
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.9 bits (112), Expect = 7e-06
Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 6/133 (4%)
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR--FDYFIEPSVKHHTVVVNLLS 444
+ + LA C + Q+ LA + ++ + V+ +
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176
Query: 445 RVGQVDKALNFINKMPE---TPDFVIWGALF-CACRTHKDTKIAKIALQSSCSLNLSIPQ 500
R G + + + + + TPD + + A C R +D + L+ L +
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 501 AMSYCQTFMQQKG 513
+ + +
Sbjct: 237 LFTAVLLSEEDRA 249
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.7 bits (101), Expect = 2e-04
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 8/97 (8%)
Query: 336 ALVDMYAKCGNIEAASLVFGETKEK-------DLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
A + A + + L + A++ G A G +++ + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 389 MYSGTEPDGTVFLAILTACWYSGQ-VKLALNFFDSMR 424
+G PD + A L Q + M
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS 228
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 7e-07
Identities = 76/544 (13%), Positives = 155/544 (28%), Gaps = 175/544 (32%)
Query: 45 KQLRQIHAQIILHNLFAS--SRITTQLISSASLHKSIDYA---LSIFDHFTPKN-LHIFN 98
+LR +++ + S + + + S + +D+ L++ + +P+ L +
Sbjct: 145 LELRP-AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 99 VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
L+ + N + S H + + S LL +CL+V
Sbjct: 204 KLLYQIDPN--WTSRSDH----------SSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 159 GVEY----DAFVRVHLADMYVQ-LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
V+ +AF ++ + L TR +V D + + ++ S
Sbjct: 252 NVQNAKAWNAF------NLSCKILLTTRFK-QVTDFLSAATTTH------ISLDHHSMTL 298
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
+ L ++ R DL P
Sbjct: 299 TPDEVKSLL--------LKYLD-----CRPQDL----------PR--------------- 320
Query: 274 NGEAEK----ALAMFFQMLDAGVRANDF-------TVVSALSACAKVGALEAGVRVHNYI 322
E L++ + + G+ D + + + + + LE +
Sbjct: 321 --EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRKMFD 376
Query: 323 SCNDFGLKGA-IGTALV-------------DMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+ F A I T L+ + K SLV EK T
Sbjct: 377 RLSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK---YSLV-----EKQPKEST-- 425
Query: 369 IWGLAIHGRY---------EQAI------QYFKKMMYSGTEP-----DGTVFLAILTACW 408
++I Y E A+ Y + + D +
Sbjct: 426 ---ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY-------S 475
Query: 409 YSG----QVKLA--LNFFDSMRFDY-FIEPSVKHHTVVVN----LLSRVGQVDKALNFIN 457
+ G ++ + F + D+ F+E ++H + N +L+ + Q+ +I
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 458 KMPETP--------DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFM 509
DF+ C K T + +IAL + + +
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLIC--SKYTDLLRIALMA--------EDEAIFEEAHK 585
Query: 510 Q-QK 512
Q Q+
Sbjct: 586 QVQR 589
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 9e-04
Identities = 16/143 (11%), Positives = 45/143 (31%), Gaps = 9/143 (6%)
Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
+ + ++ + + AD K +++ + L++ + + +
Sbjct: 91 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI 150
Query: 216 RKAVELFGM---MPKKNVASWVSLIDG-FMRKGDLKKAGELFEQ----MPEKGVVSWTAM 267
+ +F + +V+ + D A ++FE + A
Sbjct: 151 KSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY-VLAY 209
Query: 268 INGFSQNGEAEKALAMFFQMLDA 290
I+ S E +F ++L +
Sbjct: 210 IDYLSHLNEDNNTRVLFERVLTS 232
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 520 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.67 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.66 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.66 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.57 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.54 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.54 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.53 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.52 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.52 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.49 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.49 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.48 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.47 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.41 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.4 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.39 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.32 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.32 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.31 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.27 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.27 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.25 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.25 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.25 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.24 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.24 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.22 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.21 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.18 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.16 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.16 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.15 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.1 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.1 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.07 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.07 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.05 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.04 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.01 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.01 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.98 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.97 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.97 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.97 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.96 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.96 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.95 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.95 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.93 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.92 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.91 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.91 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.9 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.89 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.87 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.86 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.84 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.83 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.83 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.83 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.82 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.81 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.79 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.79 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.78 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.76 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.75 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.73 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.7 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.7 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.7 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.69 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.66 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.65 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.65 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.65 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.64 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.64 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.63 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.63 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.61 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.6 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.6 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.59 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.58 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.58 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.57 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.56 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.56 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.56 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.56 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.55 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.5 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.49 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.48 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.47 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.47 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.46 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.45 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.45 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.45 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.42 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.42 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.41 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.41 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.4 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.39 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.38 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.37 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.34 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.33 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.32 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.29 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.28 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.25 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.25 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.25 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.24 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.24 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.23 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.23 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.22 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.17 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.15 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.09 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.07 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.05 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.01 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.0 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.96 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.93 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.91 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.89 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.82 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.8 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.76 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.71 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.7 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.57 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.57 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.56 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.46 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.43 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.42 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.41 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.39 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.35 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.35 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.35 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.32 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.22 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.02 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.98 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.73 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.71 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.71 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.53 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.53 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.43 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.32 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.08 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.78 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.64 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.6 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.53 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.45 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.42 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.09 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.8 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.36 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.28 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.02 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.53 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.17 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.01 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.76 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.62 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.57 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.38 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 92.23 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.11 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.94 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.83 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.78 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.96 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.71 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.67 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.63 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.02 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.32 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.01 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.83 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 87.2 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 86.35 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 86.01 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.93 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.98 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.24 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.87 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 82.69 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.84 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.16 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 80.58 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=343.74 Aligned_cols=446 Identities=12% Similarity=0.049 Sum_probs=347.5
Q ss_pred CChHHHHHHHHHHhcCCChHHHHHHhcccCC--CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHH
Q 010031 61 ASSRITTQLISSASLHKSIDYALSIFDHFTP--KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138 (520)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 138 (520)
++...++.++..|.+.|++++|+.+|+++.. |+..++..++.+|.+.|++++|+.+|+++.. .+++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHH
Confidence 3455555556666666666666665555532 4445555555566666666666666655543 23455555555556
Q ss_pred HhccCChhhHHHHHHHHHHh---------------CCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCC---------
Q 010031 139 VASLSLLSLGRGLHCLIVKS---------------GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN--------- 194 (520)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------- 194 (520)
+.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 66666666666555532111 112245556666666666666666666666555442
Q ss_pred ----------------------------CCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--CCHHHHHHHHHHHHhcC
Q 010031 195 ----------------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNVASWVSLIDGFMRKG 244 (520)
Q Consensus 195 ----------------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~ 244 (520)
..+...+|+.++..|.+.|++++|..+|+++.+ ++..+++.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 111222333445667788999999999999998 89999999999999999
Q ss_pred CHHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHH
Q 010031 245 DLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321 (520)
Q Consensus 245 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (520)
++++|.++|+++.+ .+..+|..++.+|.+.|++++|..+++++.... +.+..++..++..|.+.|++++|..+|++
T Consensus 320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999863 357889999999999999999999999998763 56788999999999999999999999999
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 010031 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398 (520)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 398 (520)
+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. ..+..
T Consensus 399 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 476 (597)
T 2xpi_A 399 SSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPL 476 (597)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 98764 34678999999999999999999999998754 477899999999999999999999999999853 33677
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhc---CCCCC--hhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDY---FIEPS--VKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGAL 471 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 471 (520)
+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|++.++++.. +.+..+|..+
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 556 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999999999999999999997532 55777 67999999999999999999999999765 4578899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 472 FCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 472 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
..+|.+.|++++|.+.++++++++|+++.++..++.+|.+
T Consensus 557 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998864
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-41 Score=336.92 Aligned_cols=435 Identities=13% Similarity=0.033 Sum_probs=369.5
Q ss_pred HhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHH
Q 010031 73 ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152 (520)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 152 (520)
+.+.|.+..+...+..++.++...|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45667778888888888888899999999999999999999999999986 5588889999999999999999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCC---------------CCCCCchhHHHHHHHHHhcCChhH
Q 010031 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK---------------NKSESVLLWNVLINGCSKIGYLRK 217 (520)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~ 217 (520)
+.+.. .+++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 98865 3578999999999999999999999999964332 234468899999999999999999
Q ss_pred HHHHHhhCCC--CC-HHHHHH--------------------------------------HHHHHHhcCCHHHHHHHHhcC
Q 010031 218 AVELFGMMPK--KN-VASWVS--------------------------------------LIDGFMRKGDLKKAGELFEQM 256 (520)
Q Consensus 218 a~~~~~~~~~--~~-~~~~~~--------------------------------------l~~~~~~~~~~~~a~~~~~~~ 256 (520)
|..+|+++.+ |+ ...+.. ++..|.+.|++++|.++|+++
T Consensus 219 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 219 AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 9999999976 33 233222 245566789999999999999
Q ss_pred CC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHH
Q 010031 257 PE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334 (520)
Q Consensus 257 ~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 334 (520)
.+ ++..+|+.++..|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..++
T Consensus 299 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 376 (597)
T 2xpi_A 299 NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTW 376 (597)
T ss_dssp TTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHH
T ss_pred hcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHH
Confidence 87 678899999999999999999999999999875 4477889999999999999999999999998664 4578899
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 010031 335 TALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411 (520)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 411 (520)
..++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcC
Confidence 9999999999999999999998764 467899999999999999999999999999853 336779999999999999
Q ss_pred cHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-------CCC--HHHHHHHHHHHHHcCCHH
Q 010031 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-------TPD--FVIWGALFCACRTHKDTK 482 (520)
Q Consensus 412 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~--~~~~~~l~~~~~~~g~~~ 482 (520)
++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.. .|+ ..+|..++.+|.+.|+++
T Consensus 456 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 456 NILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp CHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 9999999999998542 55688999999999999999999999998743 466 779999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 483 IAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 483 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+|...++++++.+|+++.++..++.+|...|+.+
T Consensus 534 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG 567 (597)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999854
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-30 Score=245.70 Aligned_cols=375 Identities=12% Similarity=0.092 Sum_probs=272.1
Q ss_pred HHHHHhCCChhHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 010031 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRL-TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179 (520)
Q Consensus 101 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 179 (520)
...+.+.|++++|.+.++.+.+. .|+.. .+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34455666666666666666552 24333 33334445556666666666666665543 2345566666666666666
Q ss_pred hhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 010031 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259 (520)
Q Consensus 180 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 259 (520)
+++|...|+++.+.. +.+..+|..+..++.+.|++++|...|+++.+ ..|
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------------------------~~p 132 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQ-----------------------------YNP 132 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-----------------------------HCT
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------------hCC
Confidence 666666666655442 22334455555555555555555555544332 012
Q ss_pred C-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 010031 260 G-VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338 (520)
Q Consensus 260 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (520)
+ ...+..+...+...|++++|.+.|+++.... +.+..++..+...+...|+++.|...++++.+.+. .+...+..+.
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 210 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLG 210 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 2 3455666667777777777777777777653 33456777777777777888888888877776652 3556677777
Q ss_pred HHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHH
Q 010031 339 DMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVK 414 (520)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 414 (520)
..+...|++++|...+++... .+..++..++.++...|++++|...|+++.+. .|+ ..++..+...+...|+++
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 288 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 888888888888888776554 35678888999999999999999999999984 554 558999999999999999
Q ss_pred HHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010031 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSC 492 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 492 (520)
+|.+.++++.+. .+.+..++..++.++.+.|++++|++.++++.. +.+..++..+..++.+.|++++|...+++++
T Consensus 289 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 289 EAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999864 256778999999999999999999999999776 3457789999999999999999999999999
Q ss_pred cCCCCCcchhHHHHhhhhhccC
Q 010031 493 SLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 493 ~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
+++|+++.++..++.++.+.|+
T Consensus 367 ~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 367 RISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCTTCHHHHHHHHHHHHHTCC
T ss_pred hhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999998875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-27 Score=225.22 Aligned_cols=374 Identities=12% Similarity=0.063 Sum_probs=269.4
Q ss_pred HHHHHhcCCChHHHHHHhcccC---CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCh
Q 010031 69 LISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145 (520)
Q Consensus 69 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 145 (520)
+...+.+.|++++|.+.++.+. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3455678899999999998764 3455677778888999999999999999988743 34667899999999999999
Q ss_pred hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhC
Q 010031 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225 (520)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 225 (520)
++|...|+++.+.. +.+...|..+...+.+.|++++|...|+++.+.+ +.+...+..+...+...|++++|...|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999865 2356689999999999999999999999988764 445566777778888888888888888766
Q ss_pred CC--CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010031 226 PK--KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303 (520)
Q Consensus 226 ~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 303 (520)
.+ |+ +..+|..+...+...|++++|...|+++.+.+ +.+...+..+.
T Consensus 162 l~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 210 (388)
T 1w3b_A 162 IETQPN------------------------------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLG 210 (388)
T ss_dssp HHHCTT------------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHhCCC------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 53 21 12344444455555555555555555555542 22344555555
Q ss_pred HHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHH
Q 010031 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQ 380 (520)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 380 (520)
..+...|++++|...+++..+... .+..++..+..+|...|++++|.+.|+++.+ .+..+|..++.++.+.|++++
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 555566666666666665554431 2345555666666666666666666665543 244567778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 381 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
|...|+++.+. .+.+..++..+...+...|++++|.+.++++.+. .+.+..++..++.+|.+.|++++|++.++++.
T Consensus 290 A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 290 AEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888874 2335668888888888888888888888888742 24456678888888888888888888888865
Q ss_pred C-CC-CHHHHHHHHHHHHHcCC
Q 010031 461 E-TP-DFVIWGALFCACRTHKD 480 (520)
Q Consensus 461 ~-~~-~~~~~~~l~~~~~~~g~ 480 (520)
. .| +...|..+...+...|+
T Consensus 367 ~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 367 RISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCTTCHHHHHHHHHHHHHTCC
T ss_pred hhCCCCHHHHHhHHHHHHHccC
Confidence 4 34 46677777777666553
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=233.60 Aligned_cols=184 Identities=15% Similarity=0.188 Sum_probs=173.1
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC---------hHHHHHHHHHHHHcCCCCChh
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA---------LEAGVRVHNYISCNDFGLKGA 332 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 332 (520)
..++.+|++|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788899999999999999999999999999999999999999987654 688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKE----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 408 (520)
+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999998875 7999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc
Q 010031 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (520)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (520)
+.|++++|.+++++|. +.+..|+..||+.++..+...
T Consensus 187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999998 578999999999999988753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=236.83 Aligned_cols=196 Identities=12% Similarity=0.056 Sum_probs=156.8
Q ss_pred HHHHHHHHHhCCCCCh-HHHHHHHHHHhcCCChHHHHHHhcccC----CCCcchHHHHHHHHHhCCC---------hhHH
Q 010031 48 RQIHAQIILHNLFASS-RITTQLISSASLHKSIDYALSIFDHFT----PKNLHIFNVLIRGLAENSH---------FQSC 113 (520)
Q Consensus 48 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~---------~~~A 113 (520)
..+...+.+.+..+.+ .+++.+|++|++.|++++|+++|++|. +||..+||++|.+|++.+. .++|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 4455555555554433 457777888888888888888888775 3778888888888876554 5778
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCC
Q 010031 114 ISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193 (520)
Q Consensus 114 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 193 (520)
.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC----CCHHHHHHHHHHHHhc
Q 010031 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRK 243 (520)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~ 243 (520)
|+.||..||+.||.+|++.|+.++|.+++++|.+ |+..||+.++..++..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998875 8899999988888753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-26 Score=224.24 Aligned_cols=438 Identities=10% Similarity=-0.022 Sum_probs=297.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHhcccCC--CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhcc
Q 010031 65 ITTQLISSASLHKSIDYALSIFDHFTP--KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142 (520)
Q Consensus 65 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 142 (520)
.+......+.+.|++++|+..|+++.. |+...|..+..++.+.|++++|++.|+++.+.+ +.+...+..+..++...
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHH
Confidence 344455556666666666666665532 455566666666666666666666666666532 12233555556666666
Q ss_pred CChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHH---HhcCChhHHH
Q 010031 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC---SKIGYLRKAV 219 (520)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~ 219 (520)
|++++|...|+.+.+.+. ++......++..+........+.+.+..+...+..|+...+....... ........+.
T Consensus 87 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 666666666666665442 233333334444433333333333333322221111111111100000 0011111112
Q ss_pred HHHhhCCC---------C-CHHHHHHHHHHHHh---cCCHHHHHHHHhcCCC-----C------------CcccHHHHHH
Q 010031 220 ELFGMMPK---------K-NVASWVSLIDGFMR---KGDLKKAGELFEQMPE-----K------------GVVSWTAMIN 269 (520)
Q Consensus 220 ~~~~~~~~---------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~------------~~~~~~~l~~ 269 (520)
..+..... | +...+......+.. .|++++|...|+++.+ . +..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 22222211 1 24444555555554 8999999999988654 1 1457888999
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 010031 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349 (520)
Q Consensus 270 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 349 (520)
.+...|++++|...|+++.... |+...+..+..++...|+++.|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999875 337888889999999999999999999998765 3467788899999999999999
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 350 ASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 350 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
|...++.+.+ .+...+..++..+...|++++|...++++.+. .| +..++..+...+...|++++|...++++..
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998654 35678899999999999999999999999884 34 456888899999999999999999999875
Q ss_pred hcCCCCC----hhHHHHHHHHHhc---cCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 010031 426 DYFIEPS----VKHHTVVVNLLSR---VGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 426 ~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 496 (520)
...-.++ ...+..++.+|.+ .|++++|.+.++++.. +.+..++..+...+.+.|++++|...++++++++|
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 4322222 3388899999999 9999999999998764 34677889999999999999999999999999999
Q ss_pred CCcchhHHHHhhh
Q 010031 497 SIPQAMSYCQTFM 509 (520)
Q Consensus 497 ~~~~~~~~l~~~~ 509 (520)
+++..+..+....
T Consensus 481 ~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 481 TMEEKLQAITFAE 493 (514)
T ss_dssp SHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 9999887765543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=209.62 Aligned_cols=309 Identities=11% Similarity=0.045 Sum_probs=217.3
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 010031 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242 (520)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 242 (520)
+...+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...|+++.+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------- 89 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-------------- 89 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 34445555555555555555555555554432 334445555555555555555555555444330
Q ss_pred cCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHh
Q 010031 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND----FTVVSA------------LSAC 306 (520)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l------------~~~~ 306 (520)
...+..++..++.+|...|++++|...|+++.+. .|+. ..+..+ ...+
T Consensus 90 --------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 153 (450)
T 2y4t_A 90 --------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNA 153 (450)
T ss_dssp --------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112344555555666666666666666665553 2222 233222 3346
Q ss_pred hccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHH
Q 010031 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQ 383 (520)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 383 (520)
...|+++.|...++.+.+.. +.+..++..++.+|...|++++|.+.|+++.+ .+..+|..++.++...|++++|..
T Consensus 154 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 232 (450)
T 2y4t_A 154 FGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 77788888888888877654 34667777788888888888888888887654 466788889999999999999999
Q ss_pred HHHHHHHCCCCCCHH-HHHHH------------HHHHHccCcHHHHHHHHHHcHhhcCCCCC-----hhHHHHHHHHHhc
Q 010031 384 YFKKMMYSGTEPDGT-VFLAI------------LTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSR 445 (520)
Q Consensus 384 ~~~~~~~~~~~p~~~-~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~ 445 (520)
.|+++.+ ..|+.. .+..+ ...+...|++++|...++++... .|+ ...+..++.++.+
T Consensus 233 ~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 233 EVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHH
Confidence 9999887 455544 44443 78889999999999999999863 444 3478889999999
Q ss_pred cCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 446 VGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 446 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
.|++++|++.++++.. +.+...|..+..+|...|++++|...++++++++|+++.++..++.+
T Consensus 308 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999999764 44688999999999999999999999999999999999999999933
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-24 Score=207.20 Aligned_cols=378 Identities=13% Similarity=-0.006 Sum_probs=263.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCC
Q 010031 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191 (520)
Q Consensus 112 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 191 (520)
.+...+.+..... +.+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..++...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444422 2355678888899999999999999999999864 3578899999999999999999999999998
Q ss_pred CCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--CCH----HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHH
Q 010031 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265 (520)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 265 (520)
+.+ +.+..++..+..++.+.|++++|...|+++.+ |+. ..+..++..+... .+.
T Consensus 88 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~ 147 (450)
T 2y4t_A 88 QLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLR 147 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHH
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHH
Confidence 875 55688899999999999999999999999876 433 4555554442211 122
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 010031 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345 (520)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 345 (520)
.+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..++.+|...|
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 23344555566666666666665542 3345555556666666666666666666665443 234555666666666666
Q ss_pred CHHHHHHHHhcCCC--C-ChhHHHH------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHH
Q 010031 346 NIEAASLVFGETKE--K-DLLTWTA------------MIWGLAIHGRYEQAIQYFKKMMYSGTEPD-----GTVFLAILT 405 (520)
Q Consensus 346 ~~~~a~~~~~~~~~--~-~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~ 405 (520)
++++|...|+.+.. | +...+.. ++..+...|++++|...|+++.+ ..|+ ...+..+..
T Consensus 226 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICH 303 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHH
Confidence 66666666665543 2 2223333 37888899999999999999988 4555 347788888
Q ss_pred HHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHH---------
Q 010031 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCA--------- 474 (520)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~--------- 474 (520)
.+.+.|++++|...++++.+.. +.+...|..++.+|...|++++|.+.++++.. .| +...+..+..+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 381 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK 381 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccc
Confidence 8999999999999999987532 44678889999999999999999999998755 34 45566666533
Q ss_pred ---HHHcC-----CHHHHHHHHHH-HhcCCCCCcc----------hhHHHHhhhhhccCCCc
Q 010031 475 ---CRTHK-----DTKIAKIALQS-SCSLNLSIPQ----------AMSYCQTFMQQKGDGRT 517 (520)
Q Consensus 475 ---~~~~g-----~~~~A~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 517 (520)
|...| +.+++.+.+++ +++..|++.. .+..++.+|...||+++
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 33334 66788899987 7788887543 56678889999998764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-24 Score=210.62 Aligned_cols=431 Identities=10% Similarity=0.019 Sum_probs=296.4
Q ss_pred HHHHHHHHHHhcCCChHHHHHHhcccC---CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHh
Q 010031 64 RITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140 (520)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 140 (520)
..+..+...+.+.|++++|+..|+++. +.+..+|..+..++.+.|++++|++.|+++.+.+ +.+...+..+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 444555566666677777777666543 2455666666677777777777777777766632 123445566666666
Q ss_pred ccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCC--CCCCchhHHHHHHHHHhcCChhHH
Q 010031 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN--KSESVLLWNVLINGCSKIGYLRKA 218 (520)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 218 (520)
..|++++|...++ .... .|+ .....+..+...+....|...++++.... ..+........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 7777777777664 2221 122 11122334444455566666666655431 011112223344455566666666
Q ss_pred HHHHhhCCCCCHH---HHHHHHHHHHh--------cCCHHHHHHHHhcCCCCCc----------ccHHHHHHHHHhCCCh
Q 010031 219 VELFGMMPKKNVA---SWVSLIDGFMR--------KGDLKKAGELFEQMPEKGV----------VSWTAMINGFSQNGEA 277 (520)
Q Consensus 219 ~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~ 277 (520)
...+......+.. ....+...+.. .|++++|..+|+++.+.+. .++..+...+...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 6666665552221 22333322222 2477888888887765332 2467777888999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010031 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357 (520)
Q Consensus 278 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 357 (520)
++|...|+++... .|+...+..+...+...|+++.|...++.+.+... .+..++..+..++...|++++|...++++
T Consensus 260 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 260 LDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999986 45578888899999999999999999999987753 46788899999999999999999999987
Q ss_pred CC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-
Q 010031 358 KE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS- 432 (520)
Q Consensus 358 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~- 432 (520)
.+ .+...+..+...+...|++++|...++++.+. .| +...+..+...+...|++++|.+.++++.+...-.++
T Consensus 337 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 337 QSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 65 35678999999999999999999999999885 34 4558888999999999999999999998753311222
Q ss_pred ---hhHHHHHHHHHhcc----------CChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 010031 433 ---VKHHTVVVNLLSRV----------GQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 433 ---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 497 (520)
...+..+..+|.+. |++++|+..++++.. +.+...+..+..++...|++++|...+++++++.|+
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 22244556777787 999999999998765 446788999999999999999999999999999999
Q ss_pred CcchhHHH
Q 010031 498 IPQAMSYC 505 (520)
Q Consensus 498 ~~~~~~~l 505 (520)
++......
T Consensus 495 ~~~~~~~~ 502 (537)
T 3fp2_A 495 MDEKLQAT 502 (537)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 88775543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=213.62 Aligned_cols=413 Identities=11% Similarity=-0.029 Sum_probs=316.1
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHH
Q 010031 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM 173 (520)
Q Consensus 94 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (520)
...+......+.+.|++++|+..|+++.+.+ |+...|..+..++...|++++|...++.+.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3456777889999999999999999999854 888899999999999999999999999999876 3467789999999
Q ss_pred HHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC----CCHHHHHHH---HHHHHhcCCH
Q 010031 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSL---IDGFMRKGDL 246 (520)
Q Consensus 174 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l---~~~~~~~~~~ 246 (520)
+...|++++|...|+++...+ +++......++..+........+...+..+.. |+...+... ..........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999988775 45566666666665554444444443322221 111111100 0111111112
Q ss_pred HHHHHHHhcCCC---------CC-cccHHHHHHHHHh---CCChhHHHHHHHHHHH-----cCCC--------CCHHHHH
Q 010031 247 KKAGELFEQMPE---------KG-VVSWTAMINGFSQ---NGEAEKALAMFFQMLD-----AGVR--------ANDFTVV 300 (520)
Q Consensus 247 ~~a~~~~~~~~~---------~~-~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~--------p~~~~~~ 300 (520)
..+...+..... ++ ...+......+.. .|++++|...|+++.+ .... .+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 222222222221 11 3344445555554 8999999999999988 3112 2345677
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCC
Q 010031 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGR 377 (520)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 377 (520)
.+...+...|+++.|...++.+.+.... ...+..+..+|...|++++|...++.+.+ .+...+..+...+...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 7888899999999999999999887644 88889999999999999999999998765 366789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHH
Q 010031 378 YEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (520)
+++|...++++.+. .| +...+..+...+...|++++|...++++.+.. +.+...+..++.+|.+.|++++|...+
T Consensus 320 ~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 320 YDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999985 44 45688889999999999999999999998642 445678899999999999999999999
Q ss_pred hhCCC-C---CC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 457 NKMPE-T---PD----FVIWGALFCACRT---HKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 457 ~~~~~-~---~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+++.. . ++ ...+..+...+.. .|++++|...++++++..|+++.++..++.++...|+.+
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH
Confidence 98764 1 22 3388899999999 999999999999999999999999999999999999854
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-23 Score=204.70 Aligned_cols=409 Identities=12% Similarity=0.040 Sum_probs=317.5
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHH
Q 010031 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM 173 (520)
Q Consensus 94 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (520)
...|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++.+.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567788899999999999999999999843 2356688888899999999999999999999976 3467889999999
Q ss_pred HHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCC------CHHHHHHHHHHHHhcCCHH
Q 010031 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------NVASWVSLIDGFMRKGDLK 247 (520)
Q Consensus 174 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~ 247 (520)
+...|++++|...|+.+... |+ .....+..+...+....|...++++... ........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLN---GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHHhcC---CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999744322 22 2222344555666678899988888761 1112344555667778888
Q ss_pred HHHHHHhcCCCCCcc---cHHHHHHHHHhC--------CChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhhcc
Q 010031 248 KAGELFEQMPEKGVV---SWTAMINGFSQN--------GEAEKALAMFFQMLDAGVRAND-------FTVVSALSACAKV 309 (520)
Q Consensus 248 ~a~~~~~~~~~~~~~---~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~ 309 (520)
.+...+......+.. ....+...+... |++++|..+|+++.+.. +.+. .++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhc
Confidence 888888777665543 333333333322 47899999999998753 2222 2466666778889
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHH
Q 010031 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFK 386 (520)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 386 (520)
|+++.|...++.+.+.. |+...+..+...+...|++++|...++.+.+ .+..+|..+...+...|++++|...++
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999998875 4478888999999999999999999998765 467789999999999999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC----
Q 010031 387 KMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE---- 461 (520)
Q Consensus 387 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 461 (520)
++.+. .| +...+..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|++.++++..
T Consensus 335 ~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 335 KAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99984 44 35688889999999999999999999998642 44567889999999999999999999998754
Q ss_pred CC----CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 462 TP----DFVIWGALFCACRTH----------KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 462 ~~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.+ ....+.....++... |++++|...++++++.+|+++.++..++.++...|+.+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH
Confidence 11 112244455667777 99999999999999999999999999999999999854
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-21 Score=181.49 Aligned_cols=311 Identities=10% Similarity=0.023 Sum_probs=217.6
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC--C-CHHHHHHHHHHH
Q 010031 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--K-NVASWVSLIDGF 240 (520)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~ 240 (520)
+..+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+ | +...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------- 73 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAA-------- 73 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchH--------
Confidence 3445556666666666666666666655542 33455555566666666666666666555443 2 3334
Q ss_pred HhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC----CHHHHHH------------HHH
Q 010031 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA----NDFTVVS------------ALS 304 (520)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~------------l~~ 304 (520)
+..+...+...|++++|...|+++.+. .| +...+.. ...
T Consensus 74 -----------------------~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (359)
T 3ieg_A 74 -----------------------RLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQAL 128 (359)
T ss_dssp -----------------------HHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555443 22 1222222 245
Q ss_pred HhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHH
Q 010031 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQA 381 (520)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 381 (520)
.+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++.+.+ .+...+..+...+...|++++|
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 6677778888888887777654 34566777778888888888888888876654 3567788888888889999999
Q ss_pred HHHHHHHHHCCCCCCHH-HHH------------HHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-h----hHHHHHHHHH
Q 010031 382 IQYFKKMMYSGTEPDGT-VFL------------AILTACWYSGQVKLALNFFDSMRFDYFIEPS-V----KHHTVVVNLL 443 (520)
Q Consensus 382 ~~~~~~~~~~~~~p~~~-~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~----~~~~~l~~~~ 443 (520)
...+++..+. .|+.. .+. .+...+...|++++|...++++.+.. |+ . ..+..+..+|
T Consensus 208 ~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 208 LSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHH
Confidence 9999988874 44433 332 23566889999999999999998643 43 2 2355688899
Q ss_pred hccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 444 SRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.+.|++++|++.++++.. +.++.+|..+...+...|++++|...++++++++|+++.+...++.+....+.
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 999999999999998765 34688999999999999999999999999999999999999999988876654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-20 Score=173.06 Aligned_cols=281 Identities=13% Similarity=0.067 Sum_probs=207.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 010031 233 WVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309 (520)
Q Consensus 233 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 309 (520)
+..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 33344444444444444444444332 223455556666677777777777777777653 33556666677777777
Q ss_pred C-ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHH
Q 010031 310 G-ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYF 385 (520)
Q Consensus 310 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 385 (520)
| +++.|...++++.+.. +.+...+..+..++...|++++|...++++.+ .+...+..+...+...|++++|...+
T Consensus 104 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp CSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7 7777777777777654 23456677777778888888888887776654 24566777888889999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcC-------CCCChhHHHHHHHHHhccCChHHHHHHHh
Q 010031 386 KKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYF-------IEPSVKHHTVVVNLLSRVGQVDKALNFIN 457 (520)
Q Consensus 386 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (520)
+++.+. .| +...+..+...+...|++++|...++++..... .+....++..++.+|.+.|++++|++.++
T Consensus 183 ~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 183 SQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999884 44 456888888899999999999999998875321 13345688899999999999999999999
Q ss_pred hCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhh-hhccCCCc
Q 010031 458 KMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFM-QQKGDGRT 517 (520)
Q Consensus 458 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~ 517 (520)
++.. +.+...|..+...+...|++++|...++++++++|+++.++..++.++ ...|+.+.
T Consensus 261 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC---
T ss_pred HHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchhc
Confidence 8764 345778999999999999999999999999999999999999999988 67777653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.7e-19 Score=171.37 Aligned_cols=350 Identities=12% Similarity=0.018 Sum_probs=209.6
Q ss_pred CChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHh----cCC
Q 010031 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ----LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK----IGY 214 (520)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 214 (520)
+++++|...|+...+.| ++..+..|...|.. .+++++|...|++..+.| ++..+..|...|.. .++
T Consensus 57 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 34444444444443322 23333334444444 444444444444433332 33333344444443 344
Q ss_pred hhHHHHHHhhCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHhcCCCC-CcccHHHHHHHHHh----CCChhHHHHHH
Q 010031 215 LRKAVELFGMMPK-KNVASWVSLIDGFMR----KGDLKKAGELFEQMPEK-GVVSWTAMINGFSQ----NGEAEKALAMF 284 (520)
Q Consensus 215 ~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~ 284 (520)
+++|...|++..+ .+...+..+...|.. .++.++|.+.|++..+. +..++..+...|.. .+++++|..+|
T Consensus 131 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 210 (490)
T 2xm6_A 131 KAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWY 210 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence 4444444444333 233344444444444 45555555555554332 34455566666665 66777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhc----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhc
Q 010031 285 FQMLDAGVRANDFTVVSALSACAK----VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK----CGNIEAASLVFGE 356 (520)
Q Consensus 285 ~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 356 (520)
++..+.| +...+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|+.
T Consensus 211 ~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 211 RKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 7766654 34455555555553 567777777777766543 34455556666666 6777777777776
Q ss_pred CCC-CChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---cHHHHHHHHHHcHhhc
Q 010031 357 TKE-KDLLTWTAMIWGLAIH-----GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG---QVKLALNFFDSMRFDY 427 (520)
Q Consensus 357 ~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 427 (520)
..+ .+...+..+...+... +++++|...|++..+.| +...+..+...+...| ++++|.+++++..+ .
T Consensus 285 a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~ 360 (490)
T 2xm6_A 285 SAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-K 360 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-C
Confidence 654 3555666677777766 78888888888887753 3455666666666545 77888888888774 2
Q ss_pred CCCCChhHHHHHHHHHhc----cCChHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCC---
Q 010031 428 FIEPSVKHHTVVVNLLSR----VGQVDKALNFINKMPETPDFVIWGALFCACRT----HKDTKIAKIALQSSCSLNL--- 496 (520)
Q Consensus 428 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p--- 496 (520)
.++..+..+...|.. .+++++|.+.+++.....++..+..+...|.. .++.++|...|+++++..|
T Consensus 361 ---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 437 (490)
T 2xm6_A 361 ---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF 437 (490)
T ss_dssp ---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred ---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 355667777777777 77888888888876655567777777777777 7888888888888888774
Q ss_pred CCcchhHHHHhhhhh
Q 010031 497 SIPQAMSYCQTFMQQ 511 (520)
Q Consensus 497 ~~~~~~~~l~~~~~~ 511 (520)
+++.+...++.++.+
T Consensus 438 ~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 438 GTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHhcCHh
Confidence 477777777766554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-19 Score=167.41 Aligned_cols=322 Identities=13% Similarity=0.006 Sum_probs=234.8
Q ss_pred cccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHH
Q 010031 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208 (520)
Q Consensus 129 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 208 (520)
...+..+...+...|++++|...++.+.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 34567778888999999999999999998753 467899999999999999999999999988764 5567889999999
Q ss_pred HHhcCChhHHHHHHhhCCC--C---CH-HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHH
Q 010031 209 CSKIGYLRKAVELFGMMPK--K---NV-ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282 (520)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~--~---~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 282 (520)
+...|++++|...++++.+ | +. ..+..+...+. + ..+..+...+...|++++|..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~------------~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------M------------QRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------H------------HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------H------------HHHHHHHHHHHHccCHHHHHH
Confidence 9999999999999999877 4 22 22333321111 0 123334556666777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C
Q 010031 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K 360 (520)
Q Consensus 283 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 360 (520)
.++++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++...+ |
T Consensus 142 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 142 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 777766653 3455666666666777777777777777766553 34556666677777777777777777766544 2
Q ss_pred -ChhHHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHccCcHHHHHHHHHH
Q 010031 361 -DLLTWT------------AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-----VFLAILTACWYSGQVKLALNFFDS 422 (520)
Q Consensus 361 -~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~ 422 (520)
+...+. .++..+...|++++|...++++.+. .|+.. .+..+...+...|++++|.+.+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 222222 3366788999999999999999884 34432 345577788999999999999999
Q ss_pred cHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHH
Q 010031 423 MRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCACRT 477 (520)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~ 477 (520)
+.+.. +.+...+..++.+|.+.|++++|.+.++++.. .|+ ...+..+..+...
T Consensus 298 ~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 298 VLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 98532 44677889999999999999999999998765 444 5566666665443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-16 Score=163.02 Aligned_cols=339 Identities=12% Similarity=0.041 Sum_probs=270.3
Q ss_pred cHHHHHHHHhccCChhhHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHH
Q 010031 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSG--VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208 (520)
Q Consensus 131 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 208 (520)
-.....++|...|.+.++.+++++..-.+ +..+....+.++....+. +..+..+..++.... + ...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHH
Confidence 34557788888899999999999888432 112345666677766666 556666666655422 1 3347778
Q ss_pred HHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 010031 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288 (520)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 288 (520)
+...|.+++|..+|++... .....+.++ ...+++++|.++.+++.. ..+|..+..++...|++++|++.|.+.
T Consensus 1059 ai~lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 8889999999999999863 222223332 277889999999987743 568899999999999999999999653
Q ss_pred HcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHH
Q 010031 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368 (520)
Q Consensus 289 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 368 (520)
-|...|..++.++.+.|+++++.+++....+.. +++...+.++.+|.+.+++++...+. ..++...|..+
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQV 1201 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHH
Confidence 467788899999999999999999999888765 44444556999999999999755554 34566778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|..+..++...|+
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhH
Confidence 99999999999999999985 378999999999999999999998863 34788889999999999
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 449 VDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 449 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
+..|......+.. ++..+..++..|.+.|.+++|+.+++.+++++|.+...+..++.+|.+.
T Consensus 1266 f~LA~~cgl~Iiv--~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1266 FRLAQMCGLHIVV--HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHHhhhc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 9999998876543 5667778999999999999999999999999999999999999988764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-17 Score=165.22 Aligned_cols=420 Identities=12% Similarity=0.070 Sum_probs=287.6
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCC
Q 010031 51 HAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127 (520)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 127 (520)
++..++.. +-+...+..++. +.+.|+++.|..+|+++.. .+...|..++..+.+.|++++|..+|+++... .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 34444443 346778888887 4778999999999998754 35567888999999999999999999999874 36
Q ss_pred CcccHHHHHHHH-hccCChhhHHH----HHHHHHHh-CCCC-ChhHHHHHHHHHHh---------cCChhHHHHHhccCC
Q 010031 128 NRLTYPFVSKSV-ASLSLLSLGRG----LHCLIVKS-GVEY-DAFVRVHLADMYVQ---------LGKTRGAFKVFDETP 191 (520)
Q Consensus 128 ~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 191 (520)
+...|...+... ...|+.+.|.+ +|+...+. |..| +...|...+..... .|+++.|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 766666655433 34577777665 66666554 4433 45677777776654 688899999998887
Q ss_pred CCCCCCC--chhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhc-------CC-----
Q 010031 192 EKNKSES--VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ-------MP----- 257 (520)
Q Consensus 192 ~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~----- 257 (520)
+. +.+ ...|..........|. ..+..++.. +.++++.|..++.. +.
T Consensus 158 ~~--P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~ 217 (530)
T 2ooe_A 158 VN--PMINIEQLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPS 217 (530)
T ss_dssp TS--CCTTHHHHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCC
T ss_pred hc--hhhhHHHHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 73 221 1233322221111111 111111111 12333444433332 11
Q ss_pred -CCC--------cccHHHHHHHHHhC----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-------cCChH
Q 010031 258 -EKG--------VVSWTAMINGFSQN----GEA----EKALAMFFQMLDAGVRANDFTVVSALSACAK-------VGALE 313 (520)
Q Consensus 258 -~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-------~~~~~ 313 (520)
.++ ...|...+...... ++. .++..+|++.+... +-++..|......+.+ .|+++
T Consensus 218 ~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~ 296 (530)
T 2ooe_A 218 VPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMN 296 (530)
T ss_dssp CCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchh
Confidence 111 13454444433332 232 37788899988763 4466777777777664 68887
Q ss_pred -------HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Ch-hHHHHHHHHHHHcCCHHHHH
Q 010031 314 -------AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DL-LTWTAMIWGLAIHGRYEQAI 382 (520)
Q Consensus 314 -------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~-~~~~~l~~~~~~~~~~~~a~ 382 (520)
.|..++++..+.-.+.+...+..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|++++|.
T Consensus 297 ~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 297 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHH
Confidence 8999999988632344678889999999999999999999998765 3 33 47888899889999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHH-HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 383 QYFKKMMYSGTEPD-GTVFLAILTA-CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 383 ~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
.+|++..+. .|+ ...|...... +...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|+++.
T Consensus 377 ~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al 452 (530)
T 2ooe_A 377 MIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 452 (530)
T ss_dssp HHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHH
Confidence 999999884 333 3333332222 335899999999999988643 4457889999999999999999999999875
Q ss_pred C----CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q 010031 461 E----TPD--FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 461 ~----~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 499 (520)
. +|+ ...|...+......|+.+.+..+.+++++..|+++
T Consensus 453 ~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 453 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp HSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 4 222 34888888888899999999999999999988533
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-19 Score=166.73 Aligned_cols=269 Identities=10% Similarity=-0.045 Sum_probs=194.4
Q ss_pred cCCHHHHHH-HHhcCCCC-------CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHH
Q 010031 243 KGDLKKAGE-LFEQMPEK-------GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314 (520)
Q Consensus 243 ~~~~~~a~~-~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 314 (520)
.|++++|.. .|++.... +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|+++.
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355566655 55543321 13456666666777777777777777766653 3455566666666677777777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHH---------------HHHHHHHcC
Q 010031 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTA---------------MIWGLAIHG 376 (520)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~---------------l~~~~~~~~ 376 (520)
|...++++.+.. +.+..++..+..+|...|++++|.+.++++.. | +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 777777666654 23556666666777777777777777665543 1 1111110 133334889
Q ss_pred CHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHH
Q 010031 377 RYEQAIQYFKKMMYSGTEPD---GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (520)
++++|...++++.+. .|+ ..++..+...+...|++++|...++++.... +.+...+..++.+|.+.|++++|+
T Consensus 196 ~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 196 LFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999984 454 6789999999999999999999999998532 445778999999999999999999
Q ss_pred HHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC-----------cchhHHHHhhhhhccCCCc
Q 010031 454 NFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI-----------PQAMSYCQTFMQQKGDGRT 517 (520)
Q Consensus 454 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 517 (520)
+.++++.. +.+...+..+..++.+.|++++|...+++++++.|++ +.++..++.++...|+.+.
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 99998764 4467889999999999999999999999999999988 8899999999999998763
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-18 Score=158.51 Aligned_cols=281 Identities=10% Similarity=0.005 Sum_probs=186.5
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcccHHHHHHHH
Q 010031 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGF 271 (520)
Q Consensus 198 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 271 (520)
+...+..+...+...|++++|..+++++.+ .+...+..++..+...|++++|...++++.+ .+...|..+...+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 334444444444444445544444444433 1222333344444455555555555544432 2345566666667
Q ss_pred HhCC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 010031 272 SQNG-EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350 (520)
Q Consensus 272 ~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 350 (520)
...| ++++|...|+++.... +.+...+..+...+...|++++|...++.+.+... .+...+..+...|...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHH
Confidence 7777 6777777777776643 33455666677777777777777777777766543 2445556677777778888888
Q ss_pred HHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHccCcHHHHHHH
Q 010031 351 SLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG--------TEPDGTVFLAILTACWYSGQVKLALNF 419 (520)
Q Consensus 351 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a~~~ 419 (520)
.+.++++.+ .+...+..++..+...|++++|...++++.+.. ...+..++..+...+...|++++|...
T Consensus 179 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 179 ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 877776654 355678888888889999999999998887631 123346888888999999999999999
Q ss_pred HHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHH-HHcCCHH
Q 010031 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCAC-RTHKDTK 482 (520)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~-~~~g~~~ 482 (520)
++++.+.. +.+...+..+..+|.+.|++++|.+.++++.. .| +...+..+..++ ...|+.+
T Consensus 259 ~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 259 HRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99987532 44567888999999999999999999999876 34 567777777776 4566654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.4e-19 Score=161.30 Aligned_cols=375 Identities=12% Similarity=0.107 Sum_probs=174.9
Q ss_pred cCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHH
Q 010031 75 LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154 (520)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 154 (520)
+.|++++|.+.++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 567899999999988655 48999999999999999999999653 6777889999999999999999998877
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHH
Q 010031 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234 (520)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 234 (520)
..+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHH
Confidence 7763 3567788889999999999999888775 356679999999999999999999999977 4789
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHH
Q 010031 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314 (520)
Q Consensus 235 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 314 (520)
.++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +..++.-...++..|.+.|.+++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHH
Confidence 9999999999999999999988 3788999999999999999999655443 22333445568888999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhc--CCHHHHHHHHhcCCC-C-------ChhHHHHHHHHHHHcCCHHHHHHH
Q 010031 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKC--GNIEAASLVFGETKE-K-------DLLTWTAMIWGLAIHGRYEQAIQY 384 (520)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~-~-------~~~~~~~l~~~~~~~~~~~~a~~~ 384 (520)
+..+++...... +-....|+-+.-+|++- ++..+..+.|..-.. | +...|.-+...|...++++.|...
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 999999887665 55677788777777653 455666666654333 2 456899999999999999988764
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhC----
Q 010031 385 FKKMMYS-GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM---- 459 (520)
Q Consensus 385 ~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 459 (520)
|.+. ...-+...|.-++.--....-+-+|+.++= .. .|. ..+.|+.++...=+...+.+++++.
T Consensus 305 ---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~---~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~~l~ 373 (449)
T 1b89_A 305 ---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF---KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLP 373 (449)
T ss_dssp ---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH---CGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTT
T ss_pred ---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc---CHH--HHHHHHHHHHhccCcHHHHHHHHHcCCcH
Confidence 4442 122233333333322222222223333322 11 232 2344555554444455555555443
Q ss_pred ---------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010031 460 ---------PETPDFVIWGALFCACRTHKDTKIAKIALQS 490 (520)
Q Consensus 460 ---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (520)
....+..+-.++-..|....|++.-....+.
T Consensus 374 l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 374 LVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp TTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3333444555666668888888776655553
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-19 Score=162.46 Aligned_cols=384 Identities=9% Similarity=0.036 Sum_probs=183.3
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHH
Q 010031 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSC 113 (520)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 113 (520)
+-.++..+|+++.|.++++++ +++.+|..+..++.+.|++++|++.|.+. +|...|..++.++...|++++|
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHH
Confidence 334556788999999999887 23458999999999999999999999764 6777999999999999999999
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCC
Q 010031 114 ISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193 (520)
Q Consensus 114 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 193 (520)
+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 9988777663 3567788889999999999999988885 377789999999999999999999999977
Q ss_pred CCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 010031 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273 (520)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 273 (520)
..|..++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+. ........++..|.+
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQD 219 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHH
Confidence 479999999999999999999999994 89999999999999999999988777655 333345568899999
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc--cCChHHHHHHHHHHHHcCCCC------ChhHHHHHHHHHHhcC
Q 010031 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK--VGALEAGVRVHNYISCNDFGL------KGAIGTALVDMYAKCG 345 (520)
Q Consensus 274 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~ 345 (520)
.|++++|+.+++..+... +-....|+.+.-+|++ .+++.+..+.|.. +.++++ +...|..++..|...+
T Consensus 220 ~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 220 RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999988654 4455666666655554 4445555554432 122222 4678889999999999
Q ss_pred CHHHHHHHHhcCCC---------------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 010031 346 NIEAASLVFGETKE---------------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410 (520)
Q Consensus 346 ~~~~a~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 410 (520)
+++.|....-+-.. .|...|...+..|.. .....+.-+.......+.| +..+..+.+.
T Consensus 297 e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~l~~ll~~l~~~ld~-----~r~v~~~~~~ 369 (449)
T 1b89_A 297 EYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRLDH-----TRAVNYFSKV 369 (449)
T ss_dssp CHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGGGCCH-----HHHHHHHHHT
T ss_pred hHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhccCc-----HHHHHHHHHc
Confidence 99999876655432 244555555555552 1122222222222211222 2233444556
Q ss_pred CcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 411 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
|++.-+..++..+.. ..+..+-.++-..|...++++.-..-++.-.
T Consensus 370 ~~l~l~~~yl~~v~~----~n~~~vnealn~l~ieeed~~~lr~si~~~~ 415 (449)
T 1b89_A 370 KQLPLVKPYLRSVQN----HNNKSVNESLNNLFITEEDYQALRTSIDAYD 415 (449)
T ss_dssp TCTTTTHHHHHHHHT----TCCHHHHHHHHHHHHHTTCHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHHHHH----hhHHHHHHHHHHHHHhhhhHHHHHHHHHHhc
Confidence 666666666666552 2333444566677777777776666655443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.9e-18 Score=152.18 Aligned_cols=255 Identities=12% Similarity=-0.001 Sum_probs=196.1
Q ss_pred HHhcCCHHHHHHHHhcCCCCCc----ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHH
Q 010031 240 FMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315 (520)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 315 (520)
....|++..|+..++.....+. .....+.++|...|++++|+..++. .-+|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3445666666666665544331 2334556777777777777765543 1355666777777788888888888
Q ss_pred HHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010031 316 VRVHNYISCNDFGL-KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394 (520)
Q Consensus 316 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 394 (520)
.+.++++...+..| +...+..+..++...|++++|.+.+++ ..+...+..++..+.+.|++++|...|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 88888887765433 455666777889999999999999988 457788999999999999999999999999985 5
Q ss_pred CCHHHH---HHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHH
Q 010031 395 PDGTVF---LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWG 469 (520)
Q Consensus 395 p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 469 (520)
|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++.. +.++.++.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 664321 22334445569999999999999865 366788999999999999999999999999765 44678999
Q ss_pred HHHHHHHHcCCHHH-HHHHHHHHhcCCCCCcchhHH
Q 010031 470 ALFCACRTHKDTKI-AKIALQSSCSLNLSIPQAMSY 504 (520)
Q Consensus 470 ~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~ 504 (520)
.++..+...|+.++ +.++++++++++|++|.+...
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999999865 678999999999999987654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-17 Score=158.71 Aligned_cols=343 Identities=13% Similarity=0.054 Sum_probs=286.2
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHh----cCChhHHH
Q 010031 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQ----LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK----IGYLRKAV 219 (520)
Q Consensus 148 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 219 (520)
+...+....+. .++..+..+...|.. .+++++|...|++..+.| ++..+..|...|.. .++.++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 34445544443 467788888888888 899999999999887765 67788889999998 89999999
Q ss_pred HHHhhCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHhcCCCCC-cccHHHHHHHHHh----CCChhHHHHHHHHHHH
Q 010031 220 ELFGMMPK-KNVASWVSLIDGFMR----KGDLKKAGELFEQMPEKG-VVSWTAMINGFSQ----NGEAEKALAMFFQMLD 289 (520)
Q Consensus 220 ~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~ 289 (520)
..|++..+ .+...+..|...|.. .+++++|.++|++..+.+ ..++..+...|.. .+++++|++.|++..+
T Consensus 100 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 100 IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 99998876 567788888888888 889999999999876654 5678888888887 8899999999999998
Q ss_pred cCCCCCHHHHHHHHHHhhc----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-C
Q 010031 290 AGVRANDFTVVSALSACAK----VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK----CGNIEAASLVFGETKE-K 360 (520)
Q Consensus 290 ~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~ 360 (520)
.| +...+..+...|.. .++.++|...+++..+.+ ++..+..+...|.. .+++++|...|++..+ .
T Consensus 180 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 180 QG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred CC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 75 56777777777776 899999999999998865 56677788888886 8899999999998765 5
Q ss_pred ChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CcHHHHHHHHHHcHhhcCCCC
Q 010031 361 DLLTWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS-----GQVKLALNFFDSMRFDYFIEP 431 (520)
Q Consensus 361 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~ 431 (520)
+...+..+...+.. .+++++|...|++..+.| +...+..+...+... +++++|...+++..+ . -
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~---~ 326 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-Q---G 326 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-T---T
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-c---C
Confidence 66778888888888 899999999999998754 455777777777776 899999999999885 2 3
Q ss_pred ChhHHHHHHHHHhccC---ChHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCcchhHH
Q 010031 432 SVKHHTVVVNLLSRVG---QVDKALNFINKMPETPDFVIWGALFCACRT----HKDTKIAKIALQSSCSLNLSIPQAMSY 504 (520)
Q Consensus 432 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~ 504 (520)
+...+..+...|.+.| ++++|++.+++.....++..+..+...|.. .+++++|...++++.+. .++.++..
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 404 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQ 404 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHH
Confidence 4567778888888766 789999999998766788899999999988 89999999999999886 46899999
Q ss_pred HHhhhhh
Q 010031 505 CQTFMQQ 511 (520)
Q Consensus 505 l~~~~~~ 511 (520)
+|.+|..
T Consensus 405 Lg~~y~~ 411 (490)
T 2xm6_A 405 LGEIYYY 411 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9999987
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-17 Score=161.39 Aligned_cols=397 Identities=11% Similarity=0.019 Sum_probs=270.1
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCC-CcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHH
Q 010031 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHL 170 (520)
Q Consensus 92 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 170 (520)
.+...|..++. +.+.|++++|..+|+++.+. .| +...|...+..+.+.|++++|..+|++.++.. |+...|..+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 46677888887 47788888888888888873 34 44467777888888888888888888888753 566677766
Q ss_pred HHHH-HhcCChhHHHH----HhccCCC-CCCC-CCchhHHHHHHHHHh---------cCChhHHHHHHhhCCC-CCH---
Q 010031 171 ADMY-VQLGKTRGAFK----VFDETPE-KNKS-ESVLLWNVLINGCSK---------IGYLRKAVELFGMMPK-KNV--- 230 (520)
Q Consensus 171 ~~~~-~~~g~~~~a~~----~~~~~~~-~~~~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~~--- 230 (520)
+... ...|+.+.|.+ +|++... .|.. ++...|...+....+ .|+++.|..+|++..+ |..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 6533 35677776665 5655432 2322 345566666665544 5677778888877765 322
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH------HcC---CCCCH-----
Q 010031 231 ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML------DAG---VRAND----- 296 (520)
Q Consensus 231 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~------~~~---~~p~~----- 296 (520)
..|..........|. ..+..++.+ ..+++..|..++.++. +.. ++|+.
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 222222221111111 111111111 2345666776666532 111 24431
Q ss_pred ---HHHHHHHHHhhc----cCCh----HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCCHH-------HHH
Q 010031 297 ---FTVVSALSACAK----VGAL----EAGVRVHNYISCNDFGLKGAIGTALVDMYAK-------CGNIE-------AAS 351 (520)
Q Consensus 297 ---~~~~~l~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~ 351 (520)
..|...+..... .++. ..+..+|+++.... +.++..|..++..+.+ .|+++ +|.
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 334333322221 1233 36778898888764 4577888888888875 79987 899
Q ss_pred HHHhcCCC---C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 352 LVFGETKE---K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG--TVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 352 ~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
.++++..+ | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|.++|++..+
T Consensus 307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99998764 3 567899999999999999999999999998 46653 4788888888899999999999999985
Q ss_pred hcCCCCChhHHHHHHHH-HhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc--
Q 010031 426 DYFIEPSVKHHTVVVNL-LSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ-- 500 (520)
Q Consensus 426 ~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-- 500 (520)
.. +.+...|...+.. +...|+.++|.++|++... +.++..|..++..+.+.|+.++|..+|+++++..|.+|.
T Consensus 385 ~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 385 DA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp CT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred cc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 32 2233344333322 3368999999999998765 346889999999999999999999999999999887776
Q ss_pred --hhHHHHhhhhhccCCC
Q 010031 501 --AMSYCQTFMQQKGDGR 516 (520)
Q Consensus 501 --~~~~l~~~~~~~g~~~ 516 (520)
.|.....+....|+.+
T Consensus 463 ~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHcCCHH
Confidence 7777777888888754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.8e-16 Score=157.17 Aligned_cols=402 Identities=10% Similarity=0.097 Sum_probs=278.6
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHhcccCC-C-----CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHH
Q 010031 62 SSRITTQLISSASLHKSIDYALSIFDHFTP-K-----NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135 (520)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 135 (520)
++.--...+..|...|...+|+++++++.- + +....+.++...++. +..+..+..++... ....-+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHH
Confidence 344445677777788888888888887652 2 234555566666665 44555555555432 113335
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCCh
Q 010031 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215 (520)
Q Consensus 136 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 215 (520)
...+...|.+++|..+|++.. ......+.++ -..+++++|.++.++.. ++.+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCH
Confidence 666777888888888888752 1112222222 26678888888887653 467888888888888888
Q ss_pred hHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 010031 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293 (520)
Q Consensus 216 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 293 (520)
++|...|.+. .|...|..++.++.+.|++++|.+.|....+ ++....+.++.+|++.+++++...+. + .
T Consensus 1122 kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1122 KEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred HHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 8888888665 4667777788888888888888888876543 23334445888888888877533332 2 4
Q ss_pred CCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 010031 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373 (520)
Q Consensus 294 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 373 (520)
++...+..+...|...|+++.|..+|..+ ..|..+..+|.+.|++++|.+.+++. .+..+|..+..+|.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACV 1261 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHh
Confidence 45566777888888888888888888774 36778888888888888888888876 45577888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHhc--cCChH
Q 010031 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSR--VGQVD 450 (520)
Q Consensus 374 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~--~g~~~ 450 (520)
..|++..|...... +..+...+..++..|.+.|.+++|+.+++.... +.+ ....|.-+..+|++ -++..
T Consensus 1262 e~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~---LeraH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred hhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cChhHhHHHHHHHHHHHhCCHHHHH
Confidence 88888888776553 333556677888889999999999999987763 333 34567667666665 45677
Q ss_pred HHHHHHhhCCC-C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC------------CCCCcchhHHHHhhhhh
Q 010031 451 KALNFINKMPE-T------PDFVIWGALFCACRTHKDTKIAKIALQSSCSL------------NLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 451 ~A~~~~~~~~~-~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~p~~~~~~~~l~~~~~~ 511 (520)
++.+.|..-.. + -+...|..+...|.+.|+++.|....-+-... .+.|+..+.....+|.+
T Consensus 1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHh
Confidence 77777765433 2 35678999999999999999998444333222 67788888888888875
Q ss_pred cc
Q 010031 512 KG 513 (520)
Q Consensus 512 ~g 513 (520)
.+
T Consensus 1414 ~~ 1415 (1630)
T 1xi4_A 1414 FK 1415 (1630)
T ss_pred hC
Confidence 54
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=162.96 Aligned_cols=252 Identities=9% Similarity=-0.081 Sum_probs=187.0
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 010031 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (520)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (520)
...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446666677777777777777777776653 3455666677777777777777777777776654 2345666777777
Q ss_pred HHhcCCHHHHHHHHhcCCCCC-------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 010031 341 YAKCGNIEAASLVFGETKEKD-------------LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PDGTVFLAILTA 406 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~ 406 (520)
|...|++++|...++++.+.+ ...+..+...+...|++++|...++++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 777777777777776665411 123344577888899999999999999985322 147789999999
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 484 (520)
+...|++++|.+.++++.+.. +.+..++..++.+|.+.|++++|++.++++.. +.+..++..+..+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998642 45678899999999999999999999998765 34578899999999999999999
Q ss_pred HHHHHHHhcCCCC------------CcchhHHHHhhhhhccCCC
Q 010031 485 KIALQSSCSLNLS------------IPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 485 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~ 516 (520)
...+++++++.|+ +...+..++.++...|+.+
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 9999999999887 4778999999999888754
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=163.18 Aligned_cols=297 Identities=13% Similarity=0.021 Sum_probs=168.3
Q ss_pred HHHhcCChhHHHH-HhccCCCCCC---CCCchhHHHHHHHHHhcCChhHHHHHHhhCCC---CCHHHHHHHHHHHHhcCC
Q 010031 173 MYVQLGKTRGAFK-VFDETPEKNK---SESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGD 245 (520)
Q Consensus 173 ~~~~~g~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 245 (520)
.+...|++++|.. .+++...... ..+...+..+...+.+.|++++|...|+++.+ .+..++..+..++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 4455566666666 6665443311 11244556666666666666666666666544 233445555555555555
Q ss_pred HHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHH
Q 010031 246 LKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322 (520)
Q Consensus 246 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 322 (520)
+++|...|+++.+ .+..++..+...|...|++++|...++++..... .+...+... +...
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~-------~~~~--------- 176 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPA-------EEGA--------- 176 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC----------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHH-------HHHh---------
Confidence 5555555554432 1234445555555555555555555555554321 111111000 0000
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-C
Q 010031 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-D 396 (520)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~ 396 (520)
+.......+..+...+ ..|++++|...++++.+ | +..++..++..+...|++++|...++++.+. .| +
T Consensus 177 ---~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~ 250 (368)
T 1fch_A 177 ---GGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPND 250 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred ---hhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCC
Confidence 0000000000122223 66777777777776654 2 3567777888888888888888888888774 34 3
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCC----------
Q 010031 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPD---------- 464 (520)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---------- 464 (520)
..++..+...+...|++++|...++++.+.. +.+...+..++.+|.+.|++++|...++++.. +.+
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 5577888888888888888888888877532 34466778888888888888888888877654 112
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 465 -FVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 465 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
..+|..+..++...|++++|..++++.++.
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 577888888888888888888888776653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-18 Score=158.68 Aligned_cols=260 Identities=11% Similarity=-0.002 Sum_probs=150.5
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHhhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcccHHHHHHH
Q 010031 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMING 270 (520)
Q Consensus 197 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~ 270 (520)
.+...+..+...+.+.|++++|..+|+++.+ .+..++..+...+...|++++|...|+++.+ .+..+|..+...
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3556677788888888888888888877765 3455666666666667777776666666543 234566666666
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 010031 271 FSQNGEAEKALAMFFQMLDAGVRAND-----------FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339 (520)
Q Consensus 271 ~~~~~~~~~a~~~~~~m~~~~~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (520)
|...|++++|...|+++.+.. |+. ..+..+...+...|++++|...++++.+.....
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------- 210 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM---------- 210 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS----------
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc----------
Confidence 677777777777776666532 211 111222344444555555555555544432110
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHH
Q 010031 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALN 418 (520)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 418 (520)
.+..++..++..+...|++++|+..|+++.+. .| +..++..+..++...|++++|..
T Consensus 211 --------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 211 --------------------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 13445555666666666666666666666653 23 34466666666666666666666
Q ss_pred HHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-------------CHHHHHHHHHHHHHcCCHHHH
Q 010031 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-------------DFVIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-------------~~~~~~~l~~~~~~~g~~~~A 484 (520)
.++++.+.. +.+...+..+..+|.+.|++++|.+.++++.. .| +..+|..+..++...|+.+.+
T Consensus 269 ~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 269 AYTRALEIQ--PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 666665421 23355666666666666666666666666543 11 245667777777777777776
Q ss_pred HHHHHHHh
Q 010031 485 KIALQSSC 492 (520)
Q Consensus 485 ~~~~~~~~ 492 (520)
..+.++.+
T Consensus 347 ~~~~~~~l 354 (365)
T 4eqf_A 347 QAANLGDL 354 (365)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhhH
Confidence 66655543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-17 Score=159.96 Aligned_cols=385 Identities=12% Similarity=0.007 Sum_probs=211.1
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhhhC-----C--CCC-CcccHHHHHHHHhccCChhhHHHHHHHHHHhC---C-
Q 010031 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRL-----S--VRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG---V- 160 (520)
Q Consensus 93 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~- 160 (520)
....||.+...+...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...+++..+.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3457888888888889999999888876542 1 123 23467778888888888888888888776531 0
Q ss_pred --C-CChhHHHHHHHHHHhc--CChhHHHHHhccCCCCCCCCCchhHHHHHHHH---HhcCChhHHHHHHhhCCC---CC
Q 010031 161 --E-YDAFVRVHLADMYVQL--GKTRGAFKVFDETPEKNKSESVLLWNVLINGC---SKIGYLRKAVELFGMMPK---KN 229 (520)
Q Consensus 161 --~-~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~---~~ 229 (520)
. ....++..+..++... +++++|+..|++..+.. |.++..+..+..++ ...++.++|+..+++..+ .+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 1 1234555555444443 46778888888776653 33444454444443 345666677777666554 23
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010031 230 VASWVSLIDGFMR----KGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302 (520)
Q Consensus 230 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 302 (520)
...+..+...+.. .++.++|.+.+++... .+..++..+...|...|++++|+..+++..+.. +-+..++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 4444444433333 3456666666665432 234456666677777777777777777766642 2233444444
Q ss_pred HHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHH
Q 010031 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYE 379 (520)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 379 (520)
..+|...+... ..... ..........+.++.|...++...+ .+..++..+...+...|+++
T Consensus 288 g~~y~~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 288 GCCYRAKVFQV---------MNLRE-------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHh---------hhHHH-------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 43332111000 00000 0000011112235666666665543 35567888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHH
Q 010031 380 QAIQYFKKMMYSGTEPDGT--VFLAILT-ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFI 456 (520)
Q Consensus 380 ~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (520)
+|+..|++..+....|... .+..+.. .....|++++|+..+++..+ +.|+........ ..+.+++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHH
Confidence 9999999999854333222 2333332 24578999999999999875 456543322222 2334444
Q ss_pred hhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHh
Q 010031 457 NKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQT 507 (520)
Q Consensus 457 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 507 (520)
++... +.++.+|..+..++...|++++|++.|++++++.|.+|.+..++|.
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 44322 4467799999999999999999999999999999999999988773
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-17 Score=150.23 Aligned_cols=250 Identities=10% Similarity=-0.068 Sum_probs=190.5
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (520)
..+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|+++.|...++++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 455666667777777777777777776653 3355666666677777777777777777776654 23556666677777
Q ss_pred HhcCCHHHHHHHHhcCCC--C-ChhHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010031 342 AKCGNIEAASLVFGETKE--K-DLLTWTAM--------------IW-GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 403 (520)
...|++++|.+.++++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 777777777777766543 1 22222222 22 3667789999999999998853 2256789999
Q ss_pred HHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCH
Q 010031 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDT 481 (520)
Q Consensus 404 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 481 (520)
...+...|++++|.+.++++.+.. +.+...+..++.+|.+.|++++|.+.++++.. +.+...+..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 999999999999999999998532 44577889999999999999999999998764 34678899999999999999
Q ss_pred HHHHHHHHHHhcCCCC------------CcchhHHHHhhhhhccCCC
Q 010031 482 KIAKIALQSSCSLNLS------------IPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 482 ~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~ 516 (520)
++|...++++++..|+ ++..+..++.++...|+.+
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 9999999999999999 7899999999999999854
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.4e-17 Score=143.77 Aligned_cols=235 Identities=11% Similarity=0.009 Sum_probs=194.5
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCC--C----hhHHH
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL--K----GAIGT 335 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 335 (520)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...++.+.+..... + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356677888888889999999998888876 677888888888888999999999888877643211 1 56778
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCc
Q 010031 336 ALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQ 412 (520)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~ 412 (520)
.+..+|...|++++|...++++.+ |+ ...+...|++++|...++++.. ..|+.. .+..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcC
Confidence 888889999999999998887765 33 2456677889999999999988 455544 78888889999999
Q ss_pred HHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010031 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQS 490 (520)
Q Consensus 413 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (520)
+++|...++++.... +.+...+..++.+|.+.|++++|++.++++.. +.+...|..+..++...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999998543 45677899999999999999999999998765 44578899999999999999999999999
Q ss_pred HhcCC------CCCcchhHHHHhhh
Q 010031 491 SCSLN------LSIPQAMSYCQTFM 509 (520)
Q Consensus 491 ~~~~~------p~~~~~~~~l~~~~ 509 (520)
++++. |++...+..+..++
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHHhChhhcCCCchHHHHHHHHHhh
Confidence 99999 99988888877654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-17 Score=152.40 Aligned_cols=274 Identities=12% Similarity=0.015 Sum_probs=161.5
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcccHHHHHHHH
Q 010031 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGF 271 (520)
Q Consensus 198 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 271 (520)
+...+..+...+...|++++|..+++++.+ .+...+..+...+...|++++|...|+++.+ .+..++..+...+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 344556666777777777777777766654 2344555555555555555555555555432 1234455555555
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHH-HH-HHHhcCCHHH
Q 010031 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL-VD-MYAKCGNIEA 349 (520)
Q Consensus 272 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~ 349 (520)
...|++++|...++++.... +.+...+..+...+ ++......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 55555555555555555432 11111111110000 000000001 11 2445556666
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 350 ASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 350 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
|...++++.+ .+...+..++..+...|++++|...++++.+. .| +..++..+...+...|++++|...++++.+
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666655443 24556677777777778888888888777764 33 355777777778888888888888887764
Q ss_pred hcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010031 426 DYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-------------DFVIWGALFCACRTHKDTKIAKIALQSS 491 (520)
Q Consensus 426 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 491 (520)
.. +.+...+..+..+|.+.|++++|.+.++++.. .| +...|..+..++...|++++|..+++++
T Consensus 235 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 IN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 32 33466777788888888888888888877644 22 3567777888888888888888888877
Q ss_pred hcCCCCC
Q 010031 492 CSLNLSI 498 (520)
Q Consensus 492 ~~~~p~~ 498 (520)
++..|++
T Consensus 313 l~~~~~~ 319 (327)
T 3cv0_A 313 VEPFAKE 319 (327)
T ss_dssp SHHHHHH
T ss_pred HHhcchh
Confidence 7665543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.7e-16 Score=138.78 Aligned_cols=266 Identities=10% Similarity=0.040 Sum_probs=168.4
Q ss_pred HHHhcCChhHHHHHHhhCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHH
Q 010031 208 GCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283 (520)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 283 (520)
-....|++..|+..++.....++ .....+..+|...|+++.|...++....++..++..+...+...|+.++|++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 34456666666666666554221 23344556667777777777666554333445666666777777777777777
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C
Q 010031 284 FFQMLDAGVRAN-DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K 360 (520)
Q Consensus 284 ~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 360 (520)
++++...+..|+ ...+..+...+...|++++|...+++ +.+...+..++.+|.+.|++++|.+.++.+.+ |
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 161 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDE 161 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc
Confidence 777776654443 34444555667777777777777765 35666677777777777777777777777654 3
Q ss_pred ChhHHHHHH----HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHH
Q 010031 361 DLLTWTAMI----WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436 (520)
Q Consensus 361 ~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 436 (520)
+.. ...+. ..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|.+.++++.+.. +-+..++
T Consensus 162 ~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~l 237 (291)
T 3mkr_A 162 DAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPETL 237 (291)
T ss_dssp TCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred CcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH
Confidence 321 22222 2233347888888888888875 23456678888888888888888888888877532 3456677
Q ss_pred HHHHHHHhccCChHH-HHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHH
Q 010031 437 TVVVNLLSRVGQVDK-ALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAKI 486 (520)
Q Consensus 437 ~~l~~~~~~~g~~~~-A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 486 (520)
..++.++...|+.++ +.++++++.. .|+.... .....+.+.++++..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~---~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI---KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHHHHHH
Confidence 888888888888865 5677777654 4443321 222344444454443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-15 Score=147.56 Aligned_cols=339 Identities=12% Similarity=-0.000 Sum_probs=213.9
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHhccCCCC--------CCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC-------
Q 010031 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEK--------NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK------- 227 (520)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------- 227 (520)
....|+.|...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3557889999999999999999999875431 1133456788888999999999999888876543
Q ss_pred ----CCHHHHHHHHHHHHh--cCCHHHHHHHHhcCCC--CC-cccHHHHHHH---HHhCCChhHHHHHHHHHHHcCCCCC
Q 010031 228 ----KNVASWVSLIDGFMR--KGDLKKAGELFEQMPE--KG-VVSWTAMING---FSQNGEAEKALAMFFQMLDAGVRAN 295 (520)
Q Consensus 228 ----~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~p~ 295 (520)
....++..+..++.. .+++++|...|++..+ |+ ...+..+..+ +...++.++|++.+++.++.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 123455555545444 3467888888887653 22 3344444333 445677778888888777653 334
Q ss_pred HHHHHHHHHHhh----ccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHH
Q 010031 296 DFTVVSALSACA----KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAM 368 (520)
Q Consensus 296 ~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 368 (520)
...+..+...+. ..++++.|...+++..... +.+..++..+...|...|++++|...+++..+ | +..++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 444444443333 3456777888888777654 34566677788888888888888888877654 3 44566666
Q ss_pred HHHHHHc-------------------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcC
Q 010031 369 IWGLAIH-------------------GRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYF 428 (520)
Q Consensus 369 ~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 428 (520)
..+|... +.++.|...+++..+. .|+. .++..+...+...|++++|.+.|++....
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-- 363 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-- 363 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--
Confidence 6666432 2245566666666653 3433 36666777777777777777777777642
Q ss_pred CCCChh----HHHHHHH-HHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchh
Q 010031 429 IEPSVK----HHTVVVN-LLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502 (520)
Q Consensus 429 ~~~~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 502 (520)
.|+.. .+..+.. .+...|++++|+..+++... .|+...+. +....+.+++++.++.+|+++.++
T Consensus 364 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~ 433 (472)
T 4g1t_A 364 -ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEAL 433 (472)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHH
T ss_pred -CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHH
Confidence 23321 2222322 23456777777777776543 34332221 122345566677777889999999
Q ss_pred HHHHhhhhhccCCCc
Q 010031 503 SYCQTFMQQKGDGRT 517 (520)
Q Consensus 503 ~~l~~~~~~~g~~~~ 517 (520)
..+|.+|...|+.+.
T Consensus 434 ~~LG~~~~~~g~~~~ 448 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQ 448 (472)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCHHH
Confidence 999999999998664
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-16 Score=140.71 Aligned_cols=246 Identities=12% Similarity=0.013 Sum_probs=162.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHH
Q 010031 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK--GAIGTALVDMY 341 (520)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 341 (520)
+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+....++ ...+..+..+|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 4445566666777777777777766643 22333556666666677777777777776665321111 12356667777
Q ss_pred HhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHH
Q 010031 342 AKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLAL 417 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 417 (520)
...|++++|.+.+++..+ .+..+|..+...+...|++++|...+++..+. .|+ ...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766554 34567777777788888888888888777763 443 345555552444456888888
Q ss_pred HHHHHcHhhcCCCCChhHHHHHHHHHhccCC---hHHHHHHHhhCCC----CCC------HHHHHHHHHHHHHcCCHHHH
Q 010031 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ---VDKALNFINKMPE----TPD------FVIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~----~~~------~~~~~~l~~~~~~~g~~~~A 484 (520)
+.++++.+.. +.+...+..+..++...|+ +++|...++++.. .|+ ...|..+...+...|++++|
T Consensus 163 ~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888877532 3335666777777777777 7777777776543 233 24677788889999999999
Q ss_pred HHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 485 KIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 485 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
...++++++++|+++.+...++.+....+.
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 999999999999999999999888776553
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-18 Score=170.16 Aligned_cols=119 Identities=8% Similarity=-0.022 Sum_probs=100.2
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhhh---CCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHH
Q 010031 95 HIFNVLIRGLAENSHFQSCISHFVFMLR---LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171 (520)
Q Consensus 95 ~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 171 (520)
.+||++|.+|++.|+.++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4788888888888888888888877654 4788888888888888888888888888888888888888888888888
Q ss_pred HHHHhcCCh-hHHHHHhccCCCCCCCCCchhHHHHHHHHHhcC
Q 010031 172 DMYVQLGKT-RGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213 (520)
Q Consensus 172 ~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 213 (520)
.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 888888874 678888888888888888888888887666543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-15 Score=131.26 Aligned_cols=186 Identities=13% Similarity=-0.004 Sum_probs=148.8
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 010031 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAI 403 (520)
Q Consensus 328 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l 403 (520)
++++..+..+...+.+.|++++|...|++..+ .+...+..+..++...|++++|+..|++..+ ..|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 35566777777888888888888888887655 3567788888888999999999999999888 4564 4478888
Q ss_pred HHHHHcc-----------CcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHH
Q 010031 404 LTACWYS-----------GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGAL 471 (520)
Q Consensus 404 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l 471 (520)
...+... |++++|+..+++..+.. +.+...+..+..+|...|++++|+..++++.. ..++..+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 99999999999988532 33467888899999999999999999988643 3567888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCCc
Q 010031 472 FCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGRT 517 (520)
Q Consensus 472 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 517 (520)
..++...|++++|+..++++++++|+++.++..++.++.+.|+.+.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 9999999999999999999999999999999999999999998664
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-17 Score=163.45 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=125.1
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHhcccC-------CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHH
Q 010031 62 SSRITTQLISSASLHKSIDYALSIFDHFT-------PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134 (520)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 134 (520)
-..+|+++|++|++.|++++|.++|+.|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35689999999999999999999997653 58999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCC-CCCCchhHHHHHHHHHhc
Q 010031 135 VSKSVASLSLL-SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-KSESVLLWNVLINGCSKI 212 (520)
Q Consensus 135 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 212 (520)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.+-++.+.++...+.-.. .+|...+...|.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 7899999999999999999999999987776554444444433333211 112245555666666665
Q ss_pred C
Q 010031 213 G 213 (520)
Q Consensus 213 g 213 (520)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=4.5e-15 Score=138.27 Aligned_cols=245 Identities=10% Similarity=0.034 Sum_probs=196.9
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC-hHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA-LEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (520)
..|..+...+...|++++|+..+++++... +-+...|..+..++...|+ +++|+..++++++... .+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 356777777888888888888888888763 3456677777778888886 8888888888887653 467778888888
Q ss_pred HHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc-cCcHHH
Q 010031 341 YAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWY-SGQVKL 415 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~~~ 415 (520)
+...|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++. .|+ ...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 8888888888888887765 46778999999999999999999999999984 554 5588888888888 666577
Q ss_pred H-----HHHHHHcHhhcCCCCChhHHHHHHHHHhccC--ChHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcC--------
Q 010031 416 A-----LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QVDKALNFINKMPET-PDFVIWGALFCACRTHK-------- 479 (520)
Q Consensus 416 a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g-------- 479 (520)
| ++.+++..... +-+...|..+..+|.+.| ++++|++.+.++... .+...+..++..|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 7 58888887532 334678889999999988 689999999888333 45678888888888864
Q ss_pred C-HHHHHHHHHHH-hcCCCCCcchhHHHHhhhhhc
Q 010031 480 D-TKIAKIALQSS-CSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 480 ~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 512 (520)
+ .++|+.+++++ .+++|.....|..++..+...
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 999999999999999988754
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-14 Score=127.96 Aligned_cols=203 Identities=11% Similarity=-0.027 Sum_probs=143.5
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcC
Q 010031 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHG 376 (520)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 376 (520)
..+...+...|++++|...++++.+.. +.+...+..+..+|...|++++|.+.++++.+ .+...+..+...+...|
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh
Confidence 333334444444444444444444332 12334444455555555555555555544332 24456677777888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHH
Q 010031 377 RYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF 455 (520)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 455 (520)
++++|..+++++.+.+..|+. ..+..+...+...|++++|.+.++++.+.. +.+...+..++.+|.+.|++++|...
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888774445644 477788888889999999999999987532 34567888899999999999999999
Q ss_pred HhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 456 INKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 456 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
++++.. +.+...+..+...+...|+.++|...++++++..|+++.....+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 198 YDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 998654 45677888888889999999999999999999999998877654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=129.90 Aligned_cols=224 Identities=12% Similarity=-0.081 Sum_probs=178.2
Q ss_pred hCCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 010031 273 QNGEAEKALAMFFQMLDAGVR---ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349 (520)
Q Consensus 273 ~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 349 (520)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...++++.+... .+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 457788888888888875321 1345677778888888999999999988887653 467788888888999999999
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhh
Q 010031 350 ASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426 (520)
Q Consensus 350 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 426 (520)
|.+.++++.+ .+...+..++.++...|++++|...++++.+ ..|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999887765 3567889999999999999999999999998 4566655555556667789999999999888753
Q ss_pred cCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCC-CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET-PD-----FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
. +++...+ .++..+...++.++|.+.+++.... |+ ..++..+...+...|++++|...++++++.+|++..
T Consensus 174 ~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 S--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp S--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred C--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 2 4444444 4777788888899999999987652 22 567888899999999999999999999999998876
Q ss_pred hh
Q 010031 501 AM 502 (520)
Q Consensus 501 ~~ 502 (520)
.+
T Consensus 251 ~~ 252 (275)
T 1xnf_A 251 EH 252 (275)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=132.39 Aligned_cols=209 Identities=13% Similarity=0.103 Sum_probs=142.5
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCC
Q 010031 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGR 377 (520)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 377 (520)
.+...+...|+++.|...++++.+.. +.+...+..+...+...|++++|...++++.+ .+...+..+...+...|+
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp --------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc
Confidence 33333444444444444444444322 12334444445555555555555555544332 245667777888888899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHh
Q 010031 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFIN 457 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (520)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++.++.+.|++++|++.++
T Consensus 107 ~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 107 YKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp HHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999988753 2356688888888999999999999999987532 4467788889999999999999999999
Q ss_pred hCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 458 KMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 458 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
++.. +.+..++..+..++...|++++|...++++++++|+++.++..++.+....|
T Consensus 184 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 184 AVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 8654 3457789999999999999999999999999999999999999888776654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-14 Score=127.50 Aligned_cols=229 Identities=13% Similarity=-0.007 Sum_probs=184.9
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cCChHHHHHHHHHHHHcCCCCChhHHHH
Q 010031 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK----VGALEAGVRVHNYISCNDFGLKGAIGTA 336 (520)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (520)
..++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...+++..+.+ ++..+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 445667777788888888888888888773 344566667777777 888888888888887765 6677777
Q ss_pred HHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010031 337 LVDMYAK----CGNIEAASLVFGETKE-KDLLTWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407 (520)
Q Consensus 337 l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 407 (520)
+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 8888888 8888888888887655 466788888888888 999999999999999865 566777788888
Q ss_pred Hc----cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhc----cCChHHHHHHHhhCCCCCCHHHHHHHHHHHHH--
Q 010031 408 WY----SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR----VGQVDKALNFINKMPETPDFVIWGALFCACRT-- 477 (520)
Q Consensus 408 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~-- 477 (520)
.. .+++++|...+++..+. .+...+..+..+|.. .+++++|++.+++.....+...+..+...+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 87 89999999999998852 345677888999999 99999999999987654457788888888988
Q ss_pred --cCCHHHHHHHHHHHhcCCCCCcchh
Q 010031 478 --HKDTKIAKIALQSSCSLNLSIPQAM 502 (520)
Q Consensus 478 --~g~~~~A~~~~~~~~~~~p~~~~~~ 502 (520)
.|++++|...++++++..|+++...
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999988754433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=7e-15 Score=130.46 Aligned_cols=208 Identities=9% Similarity=-0.058 Sum_probs=181.7
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C-------hhHH
Q 010031 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-D-------LLTW 365 (520)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~-------~~~~ 365 (520)
...+..+...+...|++++|...++.+.+.. .+...+..+..+|...|++++|...++...+ | + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3567778888999999999999999999887 7888999999999999999999999998775 2 1 5788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhc
Q 010031 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445 (520)
Q Consensus 366 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (520)
..+...+...|++++|...|+++.+ +.|+. ..+...|++++|...++++... .+.+...+..++..+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 9999999999999999999999998 45664 3456678999999999998852 13345688899999999
Q ss_pred cCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 446 VGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 446 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.|++++|++.++++.. +.+..+|..+..++...|++++|...++++++.+|+++.++..++.++...|+.+
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999765 4567889999999999999999999999999999999999999999999999854
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-14 Score=123.68 Aligned_cols=205 Identities=11% Similarity=-0.038 Sum_probs=142.4
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHc
Q 010031 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIH 375 (520)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 375 (520)
+..+...+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|.+.++++.+ .+..++..++..+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 3333344444444444444444444332 12233444444555555555555555544332 2445667777788888
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHH
Q 010031 376 -GRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 376 -~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (520)
|++++|...++++.+.+..|+. ..+..+...+...|++++|...++++.+.. +.+...+..++.++.+.|++++|.
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888874344553 477888888899999999999999887532 345678888999999999999999
Q ss_pred HHHhhCCC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHH
Q 010031 454 NFINKMPE--T-PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 454 ~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 506 (520)
+.++++.. + .+...+..+...+...|+.+.|...++.+.+.+|+++.+...+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 99988765 3 46777777777789999999999999999999999998876654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-14 Score=137.70 Aligned_cols=247 Identities=11% Similarity=-0.001 Sum_probs=126.5
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCCh---HHHHHHhcccCCCCcchHHHHHHHHHhCC
Q 010031 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI---DYALSIFDHFTPKNLHIFNVLIRGLAENS 108 (520)
Q Consensus 32 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 108 (520)
..+...+...|+++.|.+++....+.|. +..+..+..+|...|+. ++|...|+...+.++..+..+...+...+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 4567778888999999999999988873 23334455566667777 89999998877667777777777566655
Q ss_pred -----ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhH---HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 010031 109 -----HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG---RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180 (520)
Q Consensus 109 -----~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 180 (520)
++++|+..|++..+.|. ...+..+...|...+..+.+ .+.+......| ++.....|...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 67889999999888553 22566666666655544433 33344443333 455666777777777755
Q ss_pred hHHHH----HhccCCCCCCCCCchhHHHHHHHHHhcC---ChhHHHHHHhhCCC---CCHHHHHHHHHHHHhc----CCH
Q 010031 181 RGAFK----VFDETPEKNKSESVLLWNVLINGCSKIG---YLRKAVELFGMMPK---KNVASWVSLIDGFMRK----GDL 246 (520)
Q Consensus 181 ~~a~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~ 246 (520)
+.+.. +++..... ++..+..|...|...| +.++|+..|++..+ ++...+..+...|... ++.
T Consensus 158 ~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 158 DQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred ccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCH
Confidence 44433 33333322 3336666777777777 66667666665543 2333334444444332 455
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHH-H--HhCCChhHHHHHHHHHHHcC
Q 010031 247 KKAGELFEQMPEKGVVSWTAMING-F--SQNGEAEKALAMFFQMLDAG 291 (520)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~ 291 (520)
++|.++|++....+...+..+... + ...+++++|+.+|++..+.|
T Consensus 234 ~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 234 KTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 555555555441123334444443 2 23444555555555444433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.7e-15 Score=142.62 Aligned_cols=250 Identities=10% Similarity=-0.006 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHhcC----CHHHHHHHHhcCCCCCcccHHHHHHHHHhCC---ChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010031 231 ASWVSLIDGFMRKG----DLKKAGELFEQMPEKGVVSWTAMINGFSQNG---EAEKALAMFFQMLDAGVRANDFTVVSAL 303 (520)
Q Consensus 231 ~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 303 (520)
.....+...|...+ +.+.+..+++.....+..++..+...|...| +.++|+..|++..+.| .++...+..+.
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg 220 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVA 220 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 33444444444444 3344444555555555556666777777777 6777777777777665 44444444455
Q ss_pred HHhhcc----CChHHHHHHHHHHHHcCCCCChhHHHHHHHH-H--HhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHHc
Q 010031 304 SACAKV----GALEAGVRVHNYISCNDFGLKGAIGTALVDM-Y--AKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIH 375 (520)
Q Consensus 304 ~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~ 375 (520)
..|... +++++|...|++.. . -++..+..+... | ...+++++|.+.|++..+ .+...+..|...|. .
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~ 295 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-E 295 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-c
Confidence 555443 56777777777765 2 344555555555 3 346677777777766554 34556666666665 4
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhc-
Q 010031 376 G-----RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY----SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR- 445 (520)
Q Consensus 376 ~-----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 445 (520)
| ++++|...|++.. . -+...+..|...|.. ..++++|..+|++..+ .| +......|...|..
T Consensus 296 G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~~G 367 (452)
T 3e4b_A 296 GKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-NG---QNSADFAIAQLFSQG 367 (452)
T ss_dssp CSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-TT---CTTHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-hC---hHHHHHHHHHHHHhC
Confidence 4 7777777777765 2 234455555555544 3377777777777663 22 23344556665553
Q ss_pred ---cCChHHHHHHHhhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHhcC
Q 010031 446 ---VGQVDKALNFINKMPETPDFVIWGALFCA--CRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 446 ---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~ 494 (520)
..+.++|..+++......+......+-.. ....++.++|....++..+.
T Consensus 368 ~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 368 KGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 34677777777776543333322222222 22334556666666665543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-12 Score=129.70 Aligned_cols=438 Identities=8% Similarity=-0.004 Sum_probs=292.9
Q ss_pred hHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCC---hhHHHHHHH
Q 010031 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSH---FQSCISHFV 118 (520)
Q Consensus 45 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~---~~~A~~~~~ 118 (520)
......++..+..+ +.|...+..++..+.+.++++.+..+|+++.. .....|...+..-.+.++ ++.+.++|+
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 33444556666665 46899999999999999999999999998754 456678888888888888 999999999
Q ss_pred HhhhCC-CCCCcccHHHHHHHHhccCCh--------hhHHHHHHHHHHh-CC-CCC-hhHHHHHHHHHH---------hc
Q 010031 119 FMLRLS-VRPNRLTYPFVSKSVASLSLL--------SLGRGLHCLIVKS-GV-EYD-AFVRVHLADMYV---------QL 177 (520)
Q Consensus 119 ~m~~~~-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~---------~~ 177 (520)
+..... .+|+...|..-+....+.++. +.+.++|+..+.. |. .++ ...|...+.... ..
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 998743 237777777666655444443 3345777776654 55 454 467887777654 24
Q ss_pred CChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhc--
Q 010031 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ-- 255 (520)
Q Consensus 178 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-- 255 (520)
++++.+..+|++.+.........+|......--..+. ..+.+++.+. ..+++.|...+.+
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-----------------~~~y~~Ar~~~~e~~ 269 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-----------------SAQYMNARSLYQDWL 269 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-----------------hHHHHHHHHHHHHHH
Confidence 4578899999998853211112333322221111111 1122221110 0111222222211
Q ss_pred -----CCC--------------C--C------cccHHHHHHHHHhCC-------ChhHHHHHHHHHHHcCCCCCHHHHHH
Q 010031 256 -----MPE--------------K--G------VVSWTAMINGFSQNG-------EAEKALAMFFQMLDAGVRANDFTVVS 301 (520)
Q Consensus 256 -----~~~--------------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~~~~~ 301 (520)
+.. | + ...|...+..--..+ ..+.+..+|++.+.. ++-+...|..
T Consensus 270 ~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ 348 (679)
T 4e6h_A 270 NITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFN 348 (679)
T ss_dssp HHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHH
T ss_pred HHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 110 0 0 123555555443333 123456778888776 3556777777
Q ss_pred HHHHhhccCChHHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------------CC------
Q 010031 302 ALSACAKVGALEAGV-RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-------------KD------ 361 (520)
Q Consensus 302 l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~------ 361 (520)
.+.-+...|+.+.|. .+++...... +.+...+...+....+.|+++.|.++|+.+.. |+
T Consensus 349 ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~ 427 (679)
T 4e6h_A 349 MANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAIN 427 (679)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhh
Confidence 777777888988996 9999988643 45666777888889999999999999987764 21
Q ss_pred ------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CcHHHHHHHHHHcHhhcCCCCChh
Q 010031 362 ------LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS-GQVKLALNFFDSMRFDYFIEPSVK 434 (520)
Q Consensus 362 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~ 434 (520)
...|...+....+.|+.+.|..+|.++++.-..+....|...+..-.+. ++.+.|.++|+...+.+ +.+..
T Consensus 428 ~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~ 505 (679)
T 4e6h_A 428 QLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGE 505 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHH
T ss_pred hhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchH
Confidence 2367888888888999999999999998851112233444333333343 55999999999998754 45566
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKMPE-TP----DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
.+...+......|+.+.|..+|++... .| ....|...+.--.+.|+.+.+..+.+++.+..|+++..-...
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~ 581 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFT 581 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 777888888899999999999999775 23 245788888888899999999999999999999987655443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.8e-14 Score=120.79 Aligned_cols=192 Identities=13% Similarity=0.034 Sum_probs=94.3
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 010031 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (520)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (520)
...+..+...+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|...+++..+..+ .+...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 3445556666666667777777666666542 33455566666666666666666666666665542 344455555555
Q ss_pred HHhc-----------CCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010031 341 YAKC-----------GNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406 (520)
Q Consensus 341 ~~~~-----------~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 406 (520)
+... |++++|...+++..+ | +...+..+..++...|++++|+..|++..+.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 5555 444444444444332 2 23344444555555555555555555555443 344444455555
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhh
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINK 458 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (520)
+...|++++|+..++++.+.. +.+...+..+..++.+.|++++|++.+++
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC-------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555555544321 22334444455555555555555554444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-13 Score=122.33 Aligned_cols=241 Identities=10% Similarity=-0.004 Sum_probs=183.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHh
Q 010031 232 SWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN--DFTVVSALSAC 306 (520)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~ 306 (520)
.+......+...|++++|...|+++.+ .+...+..+...|...|++++|+..+++..+.+..|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344556677777888888888877643 2356888888999999999999999999888432222 33478888889
Q ss_pred hccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHH
Q 010031 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQ 383 (520)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 383 (520)
...|++++|...+++..+... .+..++..+..+|...|++++|...+++..+ .+...|..+...+...+++++|..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988653 4667889999999999999999999998876 355677777745555679999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccCc---HHHHHHHHHHcHhhcCCCCCh------hHHHHHHHHHhccCChHHHH
Q 010031 384 YFKKMMYSGTEPD-GTVFLAILTACWYSGQ---VKLALNFFDSMRFDYFIEPSV------KHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 384 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~ 453 (520)
.|+++.+. .|+ ...+..+...+...|+ +++|...++++.+...-.|+. ..|..+...|.+.|++++|.
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999984 555 5577778888888888 888888888887543223442 57788999999999999999
Q ss_pred HHHhhCCC-CC-CHHHHHHHHHHH
Q 010031 454 NFINKMPE-TP-DFVIWGALFCAC 475 (520)
Q Consensus 454 ~~~~~~~~-~~-~~~~~~~l~~~~ 475 (520)
+.++++.. .| +...+..+....
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHHhcCccHHHHHHHhhhhh
Confidence 99999765 34 455555554443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-14 Score=136.24 Aligned_cols=288 Identities=14% Similarity=0.054 Sum_probs=176.8
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhCCC--CC-----HHHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----c
Q 010031 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPK--KN-----VASWVSLIDGFMRKGDLKKAGELFEQMPE-----KG----V 261 (520)
Q Consensus 198 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~ 261 (520)
....+......+...|++++|...|+++.+ |+ ...+..+...+...|++++|...+++... .+ .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455566667777777777777766554 22 13445555555555665555555544321 00 2
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGV-RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (520)
.++..+...|...|++++|...+++..+... .++. .....++..+...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHH
Confidence 2344444555555555555555554433200 0010 0012233444444
Q ss_pred HHhcCC--------------------HHHHHHHHhcCCC-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010031 341 YAKCGN--------------------IEAASLVFGETKE-----K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391 (520)
Q Consensus 341 ~~~~~~--------------------~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 391 (520)
|...|+ +++|...+++... + ...++..+...+...|++++|...+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555 5555544443322 1 1246777788888888888888888887652
Q ss_pred CC-CCC----HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHhhCCC-
Q 010031 392 GT-EPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALNFINKMPE- 461 (520)
Q Consensus 392 ~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 461 (520)
.. .++ ..++..+...+...|++++|...+++......-.++ ..++..+..+|...|++++|.+.+++...
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 10 112 227777888888999999999999887642211112 45677888999999999999999887653
Q ss_pred ---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC------CCCcchhHHHHhhhhhccCCC
Q 010031 462 ---TPD----FVIWGALFCACRTHKDTKIAKIALQSSCSLN------LSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 462 ---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.++ ..++..+...+...|++++|...+++++++. |....++..++.++...|+..
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 122 4567788888999999999999999998763 344667888999999888753
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8.3e-14 Score=116.59 Aligned_cols=167 Identities=11% Similarity=0.035 Sum_probs=140.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 010031 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILT 405 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~ 405 (520)
+..+|..+...|...|++++|.+.|++..+ .+..++..+..++...|++++|...++..... .| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 556777788888888888888888887664 35678888899999999999999999998884 44 4457777778
Q ss_pred HHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHH
Q 010031 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKI 483 (520)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 483 (520)
.+...++++.|.+.+.+..... +.+...+..+..+|.+.|++++|++.+++... +.+..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8889999999999999987532 44567888999999999999999999998765 4467889999999999999999
Q ss_pred HHHHHHHHhcCCCCCcc
Q 010031 484 AKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 484 A~~~~~~~~~~~p~~~~ 500 (520)
|+..++++++++|+++.
T Consensus 160 A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhCCccCHH
Confidence 99999999999998754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-14 Score=127.57 Aligned_cols=237 Identities=10% Similarity=-0.101 Sum_probs=163.4
Q ss_pred cCCHHHHHHHHhcCCCC-------CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHH
Q 010031 243 KGDLKKAGELFEQMPEK-------GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315 (520)
Q Consensus 243 ~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 315 (520)
.|++++|...|+++.+. +..+|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 35566666666655432 13456777777888888888888888877763 34567777777788888888888
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 010031 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393 (520)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 393 (520)
...++++.+.. +.+...+..+..+|...|++++|...++++.+ |+.......+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 88888877764 23566777788888888888888888877664 433333444445566789999999998877742
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHH
Q 010031 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVI 467 (520)
Q Consensus 394 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 467 (520)
.++...+ .++..+...++.++|...+++.... .|+ ...+..++.+|.+.|++++|...++++.. .|+.
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 248 (275)
T 1xnf_A 175 DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-- 248 (275)
T ss_dssp CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--
T ss_pred CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--
Confidence 2333333 4666777888888899888887531 222 46778889999999999999999998765 3432
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 010031 468 WGALFCACRTHKDTKIAKIAL 488 (520)
Q Consensus 468 ~~~l~~~~~~~g~~~~A~~~~ 488 (520)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 333455677888888888776
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-12 Score=115.61 Aligned_cols=210 Identities=12% Similarity=-0.010 Sum_probs=182.6
Q ss_pred CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHH
Q 010031 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK----CGNIEAASLVFGETKE-KDLLTWTAMI 369 (520)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~ 369 (520)
++.++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+ .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5567777888889999999999999999883 355778889999999 9999999999998765 4678889999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 370 WGLAI----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY----SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 370 ~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.+++..+ .+ +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHH
Confidence 99999 999999999999999864 67788888899988 9999999999999985 32 5667788888
Q ss_pred HHhc----cCChHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh--
Q 010031 442 LLSR----VGQVDKALNFINKMPETPDFVIWGALFCACRT----HKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ-- 511 (520)
Q Consensus 442 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 511 (520)
.|.. .+++++|++.+++.....++..+..+...+.. .|++++|...++++++..| +.++..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8888 99999999999997765677888889999999 9999999999999999876 7899999999998
Q ss_pred --ccCCC
Q 010031 512 --KGDGR 516 (520)
Q Consensus 512 --~g~~~ 516 (520)
.|+.+
T Consensus 233 ~~~~~~~ 239 (273)
T 1ouv_A 233 GVTRNEK 239 (273)
T ss_dssp SSSCCST
T ss_pred CcccCHH
Confidence 66654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-12 Score=116.97 Aligned_cols=221 Identities=10% Similarity=0.032 Sum_probs=156.5
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-------ccCCh-------HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 010031 278 EKALAMFFQMLDAGVRANDFTVVSALSACA-------KVGAL-------EAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343 (520)
Q Consensus 278 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (520)
++|..+|++.+... +-++..|..+...+. +.|++ ++|..+|++..+.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888777652 445556666655554 34665 7888888888763123355677788888888
Q ss_pred cCCHHHHHHHHhcCCC--C-Chh-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCcHHHHHH
Q 010031 344 CGNIEAASLVFGETKE--K-DLL-TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW-YSGQVKLALN 418 (520)
Q Consensus 344 ~~~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~ 418 (520)
.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887665 3 233 78888888888888888888888888743 223334443333322 3688888888
Q ss_pred HHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010031 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE----TP--DFVIWGALFCACRTHKDTKIAKIALQSSC 492 (520)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 492 (520)
+|++..+.. +.+...|..++..+.+.|++++|+.+|+++.. +| ....|..++....+.|+.++|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887543 34567788888888888888888888888654 33 35578888888888888888888888888
Q ss_pred cCCCCCcchh
Q 010031 493 SLNLSIPQAM 502 (520)
Q Consensus 493 ~~~p~~~~~~ 502 (520)
+..|+++...
T Consensus 269 ~~~p~~~~~~ 278 (308)
T 2ond_A 269 TAFREEYEGK 278 (308)
T ss_dssp HHTTTTTSSC
T ss_pred HHcccccccc
Confidence 8888766543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-12 Score=114.31 Aligned_cols=194 Identities=11% Similarity=0.041 Sum_probs=151.0
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (520)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 456677777888888888888888877763 44566777777888888888888888888876643 3566777788888
Q ss_pred HhcCCHHHHHHHHhcCCC----C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHH
Q 010031 342 AKCGNIEAASLVFGETKE----K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKL 415 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 415 (520)
...|++++|.+.++++.+ | +...+..++..+...|++++|...++++.+. .| +...+..+...+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888887655 2 3456777888888899999999999988874 34 45678888888889999999
Q ss_pred HHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 416 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
|...++++.+. .+.+...+..+...+.+.|++++|.+.++++..
T Consensus 194 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999888742 245566778888888899999999998888754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-14 Score=135.34 Aligned_cols=266 Identities=14% Similarity=0.040 Sum_probs=160.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhCCC--CC-H----HHHHHHHHHHHhcCCHHHHHHHHhcCCCC---------CcccHH
Q 010031 202 WNVLINGCSKIGYLRKAVELFGMMPK--KN-V----ASWVSLIDGFMRKGDLKKAGELFEQMPEK---------GVVSWT 265 (520)
Q Consensus 202 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~ 265 (520)
+..+...+...|++++|...|+++.+ |+ . ..+..+...|...|++++|...+++..+. ...++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34455556666777777776666554 22 1 24455555555555555555555443211 023344
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhc
Q 010031 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND-FGLKGAIGTALVDMYAKC 344 (520)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 344 (520)
.+...|...|++++|...+++..... .+.+ ......++..+...|...
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHHc
Confidence 44445555555555555554443320 0000 011122344444555555
Q ss_pred CC-----------------HHHHHHHHhcCCC-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-
Q 010031 345 GN-----------------IEAASLVFGETKE-----K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPD- 396 (520)
Q Consensus 345 ~~-----------------~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~- 396 (520)
|+ +++|.+.+++..+ . ...++..+...+...|++++|...+++..+... .++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 55 5555555444322 1 224677778888888888888888888765211 012
Q ss_pred ---HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHhhCCC----CCC-
Q 010031 397 ---GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALNFINKMPE----TPD- 464 (520)
Q Consensus 397 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~- 464 (520)
..++..+...+...|++++|...+++......-..+ ..++..+..+|...|++++|.+.+++... .++
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 126777888889999999999999887643211111 45677888999999999999999988654 112
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 465 ---FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 465 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
..++..+...+...|++++|...+++++++.+..
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 3467778888999999999999999999877643
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=127.65 Aligned_cols=211 Identities=8% Similarity=-0.024 Sum_probs=181.6
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-HHHHHHHHhcCCC---CChhHHHHHHHHH
Q 010031 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN-IEAASLVFGETKE---KDLLTWTAMIWGL 372 (520)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~l~~~~ 372 (520)
..+..+...+...|++++|...++++++... .+...|..+..++...|+ +++|+..|+++.+ .+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4566677778889999999999999998763 467888999999999997 9999999998876 4678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhc-cCChH
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR-VGQVD 450 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 450 (520)
...|++++|+..|+++++ +.| +...|..+..++...|++++|+..++++.+.. +-+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999 456 45599999999999999999999999998632 4457789999999999 66658
Q ss_pred HH-----HHHHhhCCC-C-CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 451 KA-----LNFINKMPE-T-PDFVIWGALFCACRTHK--DTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 451 ~A-----~~~~~~~~~-~-~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
+| ++.++++.. . .+...|..+..++...| ++++|++.++++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHh
Confidence 88 477877654 3 45778999999998888 689999999998 999999999999999999886
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-13 Score=115.98 Aligned_cols=186 Identities=11% Similarity=-0.008 Sum_probs=160.1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010031 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405 (520)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 405 (520)
.+...+..+...+...|++++|.+.++.+.+ .+...+..++..+...|++++|...++++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3556778889999999999999999997765 356789999999999999999999999998852 235668889999
Q ss_pred HHHcc-CcHHHHHHHHHHcHhhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCH
Q 010031 406 ACWYS-GQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDT 481 (520)
Q Consensus 406 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 481 (520)
.+... |++++|...++++.+ .+..|+ ...+..++.++...|++++|++.++++.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999985 323343 56888999999999999999999998765 34578899999999999999
Q ss_pred HHHHHHHHHHhcCCC-CCcchhHHHHhhhhhccCCC
Q 010031 482 KIAKIALQSSCSLNL-SIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 482 ~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~ 516 (520)
++|...++++++..| +++..+..++.++...|+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ 199 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH
Confidence 999999999999999 99999998988888888754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-13 Score=132.05 Aligned_cols=181 Identities=7% Similarity=-0.045 Sum_probs=118.4
Q ss_pred ChhHHHHHHHHHHhcCCH-HHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010031 330 KGAIGTALVDMYAKCGNI-EAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 405 (520)
+...+..+..+|...|++ ++|.+.|++..+ .+...|..+..+|...|++++|...|++..+ +.|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 334444444444445555 555554444332 2345666667777777777777777777776 4566566677777
Q ss_pred HHHcc---------CcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc--------CChHHHHHHHhhCCC-CC----
Q 010031 406 ACWYS---------GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV--------GQVDKALNFINKMPE-TP---- 463 (520)
Q Consensus 406 ~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~-~~---- 463 (520)
.+... |++++|++.+++..+.. +.+...|..+..+|... |++++|++.|+++.. .|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 77777 77777777777776422 33456677777777776 777777777777554 34
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 464 DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 464 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
+...|..+..++...|++++|...++++++++|+++.++..++.++...|+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777777777777777777777766654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=127.61 Aligned_cols=236 Identities=11% Similarity=0.046 Sum_probs=146.9
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCC-CC----hh
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDA----GVRA-NDFTVVSALSACAKVGALEAGVRVHNYISCNDFG-LK----GA 332 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 332 (520)
.+..+...+...|++++|...+++.... +..| ...++..+...+...|+++.|...+++..+.... ++ ..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3444445555555555555555544321 1111 1233444455555556666665555554332100 11 22
Q ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHhcCCC-----C----ChhHHHHHHHHHHHcCCHHHHHH
Q 010031 333 IGTALVDMYAKCGN--------------------IEAASLVFGETKE-----K----DLLTWTAMIWGLAIHGRYEQAIQ 383 (520)
Q Consensus 333 ~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~ 383 (520)
++..+...|...|+ +++|.+.+++... + ...++..+...+...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 44555556666666 6666666554432 1 12467778888888999999999
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHH
Q 010031 384 YFKKMMYSGT-EPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALN 454 (520)
Q Consensus 384 ~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 454 (520)
.+++..+... .++ ..++..+...+...|++++|...+++......-.++ ..++..+..+|...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9988765210 111 227778888889999999999999887643211122 4567788899999999999999
Q ss_pred HHhhCCC----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 455 FINKMPE----TPD----FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 455 ~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
.++++.. .++ ..++..+...+...|++++|...+++++++.++.
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 9988653 122 3467788888999999999999999999987754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.6e-13 Score=118.19 Aligned_cols=207 Identities=14% Similarity=0.077 Sum_probs=138.8
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 010031 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (520)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (520)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3456667777777888888888888777653 4456677777777778888888888888777664 2456677777788
Q ss_pred HHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHH
Q 010031 341 YAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 417 (520)
+...|++++|.+.++++.+ .+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888876654 356677888888888888888888888887742 224567788888888888999999
Q ss_pred HHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHH
Q 010031 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALF 472 (520)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~ 472 (520)
..++++.+.. +.+..++..+..+|.+.|++++|.+.++++.. .| +...+..+.
T Consensus 180 ~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 180 SQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 8888887532 34566788888888888999999888888654 33 344444443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-13 Score=127.74 Aligned_cols=254 Identities=11% Similarity=0.040 Sum_probs=191.9
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHhhccCChHHHHHHHHHHHHc----CCC-CChh
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN----DFTVVSALSACAKVGALEAGVRVHNYISCN----DFG-LKGA 332 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 332 (520)
..+......+...|++++|...|+++.+.+ +.+ ...+..+...+...|+++.|...++++.+. +.. ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 345566777888888888888888888763 223 245667777888888888888888876442 111 1245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCC--------------------HHHHHH
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGR--------------------YEQAIQ 383 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 383 (520)
++..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 667788888899999999988887654 22 3478888999999999 999999
Q ss_pred HHHHHHHC----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHH
Q 010031 384 YFKKMMYS----GTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALN 454 (520)
Q Consensus 384 ~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 454 (520)
.+++..+. +-.|. ..++..+...+...|++++|...+++..+...-.++ ..++..+..+|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99887552 21222 237888888999999999999999998753211222 2378889999999999999999
Q ss_pred HHhhCCC----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC------cchhHHHHhhhhhccCCC
Q 010031 455 FINKMPE----TPD----FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI------PQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 455 ~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~ 516 (520)
.+++... .++ ..++..+...+...|++++|...+++++++.+.. +.++..++.++...|+.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 9988653 122 4577788888999999999999999999876544 568889999999999854
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-13 Score=129.60 Aligned_cols=252 Identities=10% Similarity=0.024 Sum_probs=188.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHhhccCChHHHHHHHHHHHHc----C-CCCChhHH
Q 010031 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRAND----FTVVSALSACAKVGALEAGVRVHNYISCN----D-FGLKGAIG 334 (520)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 334 (520)
+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|+++.|...+++..+. + ......++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 4456667778888888888888887763 2232 35667777778888888888888776543 1 12234566
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC---------ChhHHHHHHHHHHHcCC-----------------HHHHHHHHHHH
Q 010031 335 TALVDMYAKCGNIEAASLVFGETKEK---------DLLTWTAMIWGLAIHGR-----------------YEQAIQYFKKM 388 (520)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~ 388 (520)
..+...|...|++++|...+++..+- ...++..+...+...|+ +++|+..+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 77888888889999888888776541 23478888999999999 99999999887
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHhhC
Q 010031 389 MYS----GTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 389 ~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
.+. +-.|. ..++..+...+...|++++|.+.+++..+...-.++ ...+..+..+|...|++++|++.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 552 11222 237788888999999999999999998753211122 237788999999999999999999886
Q ss_pred CC----CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC------cchhHHHHhhhhhccCCC
Q 010031 460 PE----TP----DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI------PQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 460 ~~----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~ 516 (520)
.. .. ...++..+...+...|++++|...+++++++.++. ..++..++.++...|+.+
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 360 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence 54 11 14577888889999999999999999999876544 348889999999999854
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-13 Score=126.33 Aligned_cols=230 Identities=11% Similarity=-0.028 Sum_probs=165.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCC------CChhHHH
Q 010031 267 MINGFSQNGEAEKALAMFFQMLDA----GVRA-NDFTVVSALSACAKVGALEAGVRVHNYISCNDFG------LKGAIGT 335 (520)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 335 (520)
....+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+.+..+.... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566777777777777776653 1111 2245666666777777777777777776543111 1134566
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHH
Q 010031 336 ALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYS----GTEPDG-TVFL 401 (520)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~ 401 (520)
.+..+|...|++++|.+.+++..+ ++ ..++..+..+|...|++++|...+++..+. +..|+. .++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777888888888888888776553 11 137888999999999999999999998772 232443 4888
Q ss_pred HHHHHHHccCcHHHHHHHHHHcHhhcCCCCC---hhHHHHHHHHHhccCC---hHHHHHHHhhCCCCCC-HHHHHHHHHH
Q 010031 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSRVGQ---VDKALNFINKMPETPD-FVIWGALFCA 474 (520)
Q Consensus 402 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 474 (520)
.+...+...|++++|.+.+++..+...-..+ ...+..+...|...|+ +++|+.++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8999999999999999999988642211112 2345678889999999 9999999999865433 3467788889
Q ss_pred HHHcCCHHHHHHHHHHHhcCCC
Q 010031 475 CRTHKDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 475 ~~~~g~~~~A~~~~~~~~~~~p 496 (520)
|...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-12 Score=113.19 Aligned_cols=206 Identities=7% Similarity=-0.058 Sum_probs=151.3
Q ss_pred CCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHH
Q 010031 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIW 370 (520)
Q Consensus 294 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~ 370 (520)
.++..+......+...|++++|...|+...+....++...+..+..++...|++++|...+++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456777778888888999999999999988876546667777788888888899888888887665 3 4467888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC---hhHHHHH
Q 010031 371 GLAIHGRYEQAIQYFKKMMYSGTEPD-G-------TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVV 439 (520)
Q Consensus 371 ~~~~~~~~~~a~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 439 (520)
++...|++++|+..+++..+. .|+ . ..|..+...+...|++++|++.++++.+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 888888888888888888873 444 3 3466677777888888888888888874 2454 4567777
Q ss_pred HHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 440 VNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
..+|...|+. .++++.. ..+...+.... ....|.+++|+..++++++++|+++.+...++.+...
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 7777665543 2222221 22333343332 3446678999999999999999999999988877543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-12 Score=118.03 Aligned_cols=248 Identities=9% Similarity=0.017 Sum_probs=163.8
Q ss_pred HHHHHHHhcCCC---CCcccHHHHHHHHH-------hCCCh-------hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 010031 247 KKAGELFEQMPE---KGVVSWTAMINGFS-------QNGEA-------EKALAMFFQMLDAGVRANDFTVVSALSACAKV 309 (520)
Q Consensus 247 ~~a~~~~~~~~~---~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 309 (520)
++|..+|++... .+...|..++..+. ..|++ ++|..+|++.+..-.+-+...+..++..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 344445544432 22344555554443 34665 77888888777631123445677777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHH-HcCCHHHHHHH
Q 010031 310 GALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLA-IHGRYEQAIQY 384 (520)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~-~~~~~~~a~~~ 384 (520)
|+++.|..+|+++.+... .+.. +|..++..+.+.|++++|..+|++..+ | +...|...+.... ..|++++|..+
T Consensus 113 ~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888776432 1233 677777888888888888888887665 2 3334443333322 26999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC--hhHHHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 385 FKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 385 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
|++..+. .| +...|..++..+...|++++|..+|++......++|+ ...|..++..+.+.|+.++|..+++++..
T Consensus 192 ~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 192 FELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999884 44 4558888888899999999999999999853234553 56788889999999999999999988654
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 462 -TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 462 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
.|+......+ ..+ ....+.++++|+++..+.++|..
T Consensus 270 ~~p~~~~~~~~-~~~----------~~r~~~l~~~P~~~~~ln~lgY~ 306 (308)
T 2ond_A 270 AFREEYEGKET-ALL----------VDRYKFMDLYPCSASELKALGYK 306 (308)
T ss_dssp HTTTTTSSCHH-HHH----------HTTTCBTTBCSSCHHHHHTTTCC
T ss_pred HcccccccchH-HHH----------HHHHHhcccCCCCHHHHHhcCCC
Confidence 3332100000 111 11115677999999999988753
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.2e-13 Score=122.77 Aligned_cols=252 Identities=11% Similarity=0.031 Sum_probs=195.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHhhccCChHHHHHHHHHHHHc----CCC-CChhHH
Q 010031 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRAN----DFTVVSALSACAKVGALEAGVRVHNYISCN----DFG-LKGAIG 334 (520)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 334 (520)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|+++.|...+++..+. +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 4456678899999999999999998864 223 356778888899999999999999887543 211 234567
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 010031 335 TALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGR--------------------YEQAIQYF 385 (520)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 385 (520)
..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7888999999999999999887654 22 2378888899999999 99999999
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHHHH
Q 010031 386 KKMMYS----GTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALNFI 456 (520)
Q Consensus 386 ~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 456 (520)
++..+. +-.|. ..++..+...+...|++++|...+++..+...-.++ ..++..+..+|...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887542 11222 237778888899999999999999988643211122 237788999999999999999999
Q ss_pred hhCCC----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC------cchhHHHHhhhhhccCCC
Q 010031 457 NKMPE----TPD----FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI------PQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 457 ~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~ 516 (520)
++... .++ ..++..+...+...|++++|...++++++..|.. ..++..++.++...|+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 320 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 88653 122 4567788888999999999999999999876654 347888999999999854
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-12 Score=108.98 Aligned_cols=152 Identities=13% Similarity=0.061 Sum_probs=134.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 439 (520)
+...|..+...+...|++++|+..|++..+ +.|+ ..++..+..++...|++++|...+....... +.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 567899999999999999999999999998 4565 4588999999999999999999999987532 4456678888
Q ss_pred HHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 440 VNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
...+...++++.|.+.+++... +.+...+..+..++.+.|++++|++.++++++++|+++.++..+|.+|.+.|+.+
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8999999999999999998664 4467789999999999999999999999999999999999999999999999854
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=125.41 Aligned_cols=235 Identities=11% Similarity=0.064 Sum_probs=137.1
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHc------C-CC
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDA-------GVRANDFTVVSALSACAKVGALEAGVRVHNYISCN------D-FG 328 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~ 328 (520)
++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++++.+. + ..
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4455555555556666665555555442 11222344455555556666666666666555432 1 11
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC------
Q 010031 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKE-----------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS------ 391 (520)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 391 (520)
....++..+...|...|++++|...+++..+ .....+..+...+...|++++|..+++++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 2234455566666666666666666655432 12345777788888888899998888888763
Q ss_pred CCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhc------CCCCCh-hH------HHHHHHHHhccCChHHHHHHHh
Q 010031 392 GTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDY------FIEPSV-KH------HTVVVNLLSRVGQVDKALNFIN 457 (520)
Q Consensus 392 ~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~-~~------~~~l~~~~~~~g~~~~A~~~~~ 457 (520)
+-.|+.. ++..+...+...|++++|.+.++++.+.. ...+.. .. +..+...+...+.+.+|...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 2234333 77788888899999999999998887421 112221 12 2223333445566666666777
Q ss_pred hCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 010031 458 KMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 458 ~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 497 (520)
.... .| ...++..+..+|.+.|++++|...+++++++.|+
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 6654 23 3567888999999999999999999999998875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.5e-12 Score=105.30 Aligned_cols=170 Identities=9% Similarity=0.023 Sum_probs=145.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010031 331 GAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407 (520)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 407 (520)
...+..+...+...|++++|...++++.+ .+...+..++..+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778888999999999999998876 356788899999999999999999999998852 23566888889999
Q ss_pred HccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHH
Q 010031 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAK 485 (520)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 485 (520)
...|++++|.+.++++.... +.+...+..++.++...|++++|.+.++++.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998542 45677888999999999999999999998764 346788999999999999999999
Q ss_pred HHHHHHhcCCCCCcchhH
Q 010031 486 IALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 486 ~~~~~~~~~~p~~~~~~~ 503 (520)
..++++++..|+++....
T Consensus 165 ~~~~~~~~~~~~~~~~~~ 182 (186)
T 3as5_A 165 PHFKKANELDEGASVELA 182 (186)
T ss_dssp HHHHHHHHHHHCCCGGGG
T ss_pred HHHHHHHHcCCCchhhHh
Confidence 999999999998876654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5e-10 Score=111.41 Aligned_cols=404 Identities=6% Similarity=-0.037 Sum_probs=255.9
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCC---hhhHHHHHHHHHHhC-CCCChhHH
Q 010031 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL---LSLGRGLHCLIVKSG-VEYDAFVR 167 (520)
Q Consensus 92 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~ 167 (520)
.|...|..++..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ ++.+..+|++.+... ..|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47778888888888888888888888888873 22334456666666667777 888888888887743 13677788
Q ss_pred HHHHHHHHhcCCh--------hHHHHHhccCCC-CCC-CC-CchhHHHHHHHHHh---------cCChhHHHHHHhhCCC
Q 010031 168 VHLADMYVQLGKT--------RGAFKVFDETPE-KNK-SE-SVLLWNVLINGCSK---------IGYLRKAVELFGMMPK 227 (520)
Q Consensus 168 ~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~ 227 (520)
...+....+.++. +...++|+.... .|. .+ +...|...+..... .++++.+..+|+++..
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7777766665554 223466665432 243 33 34566666654432 3345667777777765
Q ss_pred -CCH---HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc--CC----C----
Q 010031 228 -KNV---ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA--GV----R---- 293 (520)
Q Consensus 228 -~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~----~---- 293 (520)
|.. .+|......-...+. ..+.+++.+ ...+++.|...+.++... ++ +
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred CccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 321 222222111111010 011111111 011233444444443221 11 0
Q ss_pred -------C-----C---HHHHHHHHHHhhccC-------ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 010031 294 -------A-----N---DFTVVSALSACAKVG-------ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351 (520)
Q Consensus 294 -------p-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 351 (520)
| + ...|...+.---..+ ..+.+..+|++.+..- +..+.+|...+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 0 022333332222221 1234567788887653 457888888888888899998996
Q ss_pred -HHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHH
Q 010031 352 -LVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT---------EPD------------GTVFLAILTA 406 (520)
Q Consensus 352 -~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~l~~~ 406 (520)
++|+.... | +...|...+......|+++.|..+|+++.+... .|+ ...|...+..
T Consensus 364 r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 364 TKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 99987765 3 555677888888899999999999999886310 142 2367888888
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccC-ChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG-QVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKI 483 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 483 (520)
..+.|+.+.|..+|.++.+..+ .+...+|...+..-.+.| +.+.|.++|+.... +.+...|...+......|+.+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHH
Confidence 8889999999999999985311 223445544444444554 59999999998765 3467778888888888999999
Q ss_pred HHHHHHHHhcCCCC---CcchhHHHHhhhhhccCCC
Q 010031 484 AKIALQSSCSLNLS---IPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 484 A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~ 516 (520)
|..+|+++++..|+ ....|.....+-.+.|+.+
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999998883 5577888888888888754
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-11 Score=116.86 Aligned_cols=228 Identities=8% Similarity=0.004 Sum_probs=113.8
Q ss_pred HHHHHHhcCChhHHHHHhccCCCC----CCCC-CchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcC
Q 010031 170 LADMYVQLGKTRGAFKVFDETPEK----NKSE-SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244 (520)
Q Consensus 170 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 244 (520)
....+...|++++|...+++..+. +-++ ...++..+..++...|++++|...+++..+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~----------------- 171 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE----------------- 171 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------
Confidence 556677788888888888776543 1111 235667777777888888887777665442
Q ss_pred CHHHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccCChHHHH
Q 010031 245 DLKKAGELFEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV-RAN----DFTVVSALSACAKVGALEAGV 316 (520)
Q Consensus 245 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~ 316 (520)
++...... ...+++.+...|...|++++|+..|++..+... .++ ..++..+..+|...|++++|.
T Consensus 172 -------~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 172 -------IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp -------HHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------HHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 11111110 012334444444444444444444444432200 001 123444444455555555555
Q ss_pred HHHHHHHHc----CC-CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCh---hHHHHHHHHHHHcCC---HHH
Q 010031 317 RVHNYISCN----DF-GLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDL---LTWTAMIWGLAIHGR---YEQ 380 (520)
Q Consensus 317 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~---~~~~~l~~~~~~~~~---~~~ 380 (520)
..+++..+. +. +....++..+..+|...|++++|...+++..+ .+. ..+..+...+...|+ +++
T Consensus 245 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 324 (383)
T 3ulq_A 245 PYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG 324 (383)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 555544431 11 22233444455555555555555555544332 111 123445555555565 455
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 381 AIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 381 a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
|+.++++. +..|+.. .+..+...|...|++++|.+.+++..
T Consensus 325 al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 325 FFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555443 2233222 55556666666777777777666654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.1e-11 Score=113.51 Aligned_cols=229 Identities=8% Similarity=-0.063 Sum_probs=162.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCC------CChhHH
Q 010031 266 AMINGFSQNGEAEKALAMFFQMLDAGV-RAN----DFTVVSALSACAKVGALEAGVRVHNYISCNDFG------LKGAIG 334 (520)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~ 334 (520)
.....+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+.+..+.... ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677777777777777665310 122 245566666777777777777777776542111 123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 010031 335 TALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGRYEQAIQYFKKMMY-----SGTEPDGTVF 400 (520)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~ 400 (520)
+.+..+|...|++++|.+.+++..+ ++ ..++..+..++...|++++|...+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 6777788888888888887776553 12 24677888999999999999999999876 32 2224588
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC---hhHHHHHHHHHhccCC---hHHHHHHHhhCCCCCC-HHHHHHHHH
Q 010031 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSRVGQ---VDKALNFINKMPETPD-FVIWGALFC 473 (520)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~ 473 (520)
..+...+...|++++|...+++..+...-..+ ...+..+...|...|+ +++|+..+++....|+ ...+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 88999999999999999999998753322122 3356677778888888 9999999998654333 346677888
Q ss_pred HHHHcCCHHHHHHHHHHHhcCC
Q 010031 474 ACRTHKDTKIAKIALQSSCSLN 495 (520)
Q Consensus 474 ~~~~~g~~~~A~~~~~~~~~~~ 495 (520)
.|...|++++|...++++++..
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999998653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.3e-12 Score=122.83 Aligned_cols=188 Identities=10% Similarity=-0.074 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHhhccCCh-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHH
Q 010031 295 NDFTVVSALSACAKVGAL-EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWG 371 (520)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~ 371 (520)
+...+..+..++...|++ ++|...+++..+... .+...+..+..+|...|++++|.+.|++..+ |+...+..+...
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~ 179 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMV 179 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 344444444455555555 555555555544431 2344455555555555555555555554433 334444555555
Q ss_pred HHHc---------CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcc--------CcHHHHHHHHHHcHhhcCCCC--
Q 010031 372 LAIH---------GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYS--------GQVKLALNFFDSMRFDYFIEP-- 431 (520)
Q Consensus 372 ~~~~---------~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~-- 431 (520)
+... |++++|+..|++..+. .|+ ...|..+..+|... |++++|++.|++..+. .|
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~ 254 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV---DRKA 254 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---CGGG
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh---CCCc
Confidence 5555 5666666666666552 333 33555555555555 6666666666665532 23
Q ss_pred --ChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010031 432 --SVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIAL 488 (520)
Q Consensus 432 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 488 (520)
+...|..+..+|...|++++|++.|+++.. +.+...+..+..++...|++++|+..+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666666666666665443 223445555555566666666665543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-12 Score=129.12 Aligned_cols=163 Identities=13% Similarity=0.093 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 010031 331 GAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTA 406 (520)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~ 406 (520)
...++.|..+|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|+..|++.++ +.|+. ..|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 34555555556666666666655555443 2344555555555556666666666655555 34432 355555555
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A 484 (520)
+...|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.|+++.+ .| +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 555566666666555555321 22234555555555555666666555555443 22 344555555555555555555
Q ss_pred HHHHHHHhcCCCC
Q 010031 485 KIALQSSCSLNLS 497 (520)
Q Consensus 485 ~~~~~~~~~~~p~ 497 (520)
.+.+++++++.|+
T Consensus 165 ~~~~~kal~l~~~ 177 (723)
T 4gyw_A 165 DERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh
Confidence 5555555555443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-12 Score=104.92 Aligned_cols=144 Identities=12% Similarity=0.017 Sum_probs=116.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (520)
|...+...|++++|+..++.... ..|+.. .+..+...|...|++++|++.|++..+.. +-+...|..+..+|.+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 34445566788999998888765 345444 66678888999999999999999988532 34577899999999999
Q ss_pred CChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHhcCCCCCcchhHHHHhhhhhccCC
Q 010031 447 GQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIA-LQSSCSLNLSIPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 447 g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 515 (520)
|++++|+..|+++.. .| ++..|..+...+.+.|++++|... ++++++++|+++.++...+.++...|+.
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~d 150 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGED 150 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCcC
Confidence 999999999998765 44 577899999999999998776655 6999999999999999999999998873
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-11 Score=104.75 Aligned_cols=152 Identities=8% Similarity=-0.019 Sum_probs=107.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVV 439 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 439 (520)
++..+......+...|++++|+..|++..+....++...+..+..++...|++++|++.+++..+. .| +...+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHHH
Confidence 445666667777777777888777777777543356666666777777778888888877777642 33 34567777
Q ss_pred HHHHhccCChHHHHHHHhhCCC-CC-CH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC--CcchhHHHHhh
Q 010031 440 VNLLSRVGQVDKALNFINKMPE-TP-DF-------VIWGALFCACRTHKDTKIAKIALQSSCSLNLS--IPQAMSYCQTF 508 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 508 (520)
..+|...|++++|++.+++... .| +. ..|..+...+...|++++|+..++++++++|+ ++.++..+|.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 7777778888888877777654 23 34 34666667777788888888888888888888 77888888888
Q ss_pred hhhccCC
Q 010031 509 MQQKGDG 515 (520)
Q Consensus 509 ~~~~g~~ 515 (520)
+...|+.
T Consensus 163 ~~~~~~~ 169 (228)
T 4i17_A 163 FYNNGAD 169 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-11 Score=107.79 Aligned_cols=215 Identities=12% Similarity=0.003 Sum_probs=135.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 010031 268 INGFSQNGEAEKALAMFFQMLDA----GVRAN-DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (520)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (520)
+..|...|++++|...|.+..+. |-+++ ..++..+..+|...|++++|...+++..+. +.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~ 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FT 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HH
Confidence 45556666666666666655432 11111 234444455555555555555555444321 11
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHccCcHH
Q 010031 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH-GRYEQAIQYFKKMMYSGTEPD-------GTVFLAILTACWYSGQVK 414 (520)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~ 414 (520)
..|+...+ ..+++.+...|... |++++|+..|++..+. .|+ ..++..+...+...|+++
T Consensus 109 ~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 109 HRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 11222111 23567788888886 9999999999988762 221 246788888999999999
Q ss_pred HHHHHHHHcHhhcCCCCCh-----hHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHH------HHHHHHHHHH--HcCC
Q 010031 415 LALNFFDSMRFDYFIEPSV-----KHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFV------IWGALFCACR--THKD 480 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~------~~~~l~~~~~--~~g~ 480 (520)
+|+..+++..+...-.+.. ..|..+..++...|++++|+..+++... .|+.. .+..++.++. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 9999999987532111221 1567788889999999999999998765 34321 2344555554 4567
Q ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 481 TKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 481 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
+++|+..|+++++++|.+...+..+-..+.
T Consensus 256 ~~~A~~~~~~~~~l~~~~~~~~~~~k~~~~ 285 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKWKITILNKIKESIQ 285 (292)
T ss_dssp HHHHHHHHTTSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHHHHhh
Confidence 999999999999999988777766666553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=124.86 Aligned_cols=146 Identities=14% Similarity=0.120 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVN 441 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~ 441 (520)
+|+.|...+...|++++|+..|++.++ +.|+. .++..+..++.+.|++++|++.|++..+. .| +...|..+..
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 444444455555555555555555444 23332 24444444455555555555555544431 22 2334444555
Q ss_pred HHhccCChHHHHHHHhhCCC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 442 LLSRVGQVDKALNFINKMPE-T-PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
+|.+.|++++|++.+++..+ . .+...|..+..++...|++++|+..|+++++++|+++.++..++.++...|+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 55555555555555544332 2 2234444444445555555555555555555555555555555555554444
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-09 Score=102.70 Aligned_cols=268 Identities=11% Similarity=0.014 Sum_probs=188.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC----CCc----ccHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCH----HHH
Q 010031 233 WVSLIDGFMRKGDLKKAGELFEQMPE----KGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAGV-RAND----FTV 299 (520)
Q Consensus 233 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~~ 299 (520)
.......+...|++++|...+++... .+. .++..+...+...|++++|...+++...... .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34445567788999999999876432 221 2466777888899999999999998775311 1222 234
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHc----CCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C------ChhH
Q 010031 300 VSALSACAKVGALEAGVRVHNYISCN----DFG--L-KGAIGTALVDMYAKCGNIEAASLVFGETKE--K------DLLT 364 (520)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~------~~~~ 364 (520)
..+...+...|+++.|...+++..+. +.. | ....+..+...+...|++++|...+++... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56667788999999999999987653 221 2 234556678889999999999999887543 1 1246
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHccCcHHHHHHHHHHcHhhcCCCCC--hhHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD--GTVFL----AILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHH 436 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~ 436 (520)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++......-.+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77788889999999999999999876322221 12111 2233477899999999999998742211111 2245
Q ss_pred HHHHHHHhccCChHHHHHHHhhCCC----CC---CH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 437 TVVVNLLSRVGQVDKALNFINKMPE----TP---DF-VIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~---~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
..+..++...|++++|...+++... .+ +. ..+..+..++...|+.++|...+++++++.+....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~ 328 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 328 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccH
Confidence 6788889999999999999987643 11 22 25556677788999999999999999998776443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.1e-12 Score=116.74 Aligned_cols=222 Identities=11% Similarity=0.064 Sum_probs=159.2
Q ss_pred CHHHHHHHHHHhhccCChHHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------
Q 010031 295 NDFTVVSALSACAKVGALEAGVRVHNYISCN-------DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-------- 359 (520)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------- 359 (520)
+..++..+...+...|++++|..+++++.+. .......++..+...|...|++++|...+++...
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3466778888899999999999999998763 2334556778889999999999999999887653
Q ss_pred ---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhc--
Q 010031 360 ---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS------GTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDY-- 427 (520)
Q Consensus 360 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 427 (520)
....++..+...+...|++++|...++++.+. +-.|+. ..+..+...+...|++++|.++++++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12357888899999999999999999998774 223433 378888889999999999999999987531
Q ss_pred ---CCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCCC----------CCC-------HHHHHHHHHHHHHcCCHHHHHH
Q 010031 428 ---FIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMPE----------TPD-------FVIWGALFCACRTHKDTKIAKI 486 (520)
Q Consensus 428 ---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-------~~~~~~l~~~~~~~g~~~~A~~ 486 (520)
+..| ...++..+..+|.+.|++++|.+.++++.. .+. ...+......+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 245778899999999999999999988653 011 1122233334556777777888
Q ss_pred HHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 487 ALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 487 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.++++....|..+.++..++.+|.+.|+.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 295 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFE 295 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHH
Confidence 888888899999999999999999999854
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-10 Score=107.32 Aligned_cols=57 Identities=4% Similarity=-0.130 Sum_probs=33.4
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCC-CC----CchhHHHHHHHHHhcCChhHHHHHHhhCC
Q 010031 170 LADMYVQLGKTRGAFKVFDETPEKNK-SE----SVLLWNVLINGCSKIGYLRKAVELFGMMP 226 (520)
Q Consensus 170 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 226 (520)
....+...|++++|...|++..+... .+ ...++..+..+|...|+++.|...+++..
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34455677777777777766544210 11 23355666666777777777766665443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.25 E-value=5.9e-10 Score=98.38 Aligned_cols=182 Identities=8% Similarity=0.000 Sum_probs=131.7
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010031 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-----DLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389 (520)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 389 (520)
+...+++..+.+ .++......+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566555443 344445557777788888888888888776432 44567778889999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHccC--cHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 390 YSGTEP-----DGTVFLAILTA--CWYSG--QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 390 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
+ ..| +..+...+..+ ....| ++.+|..+|+++... .|+..+-..+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 467 35566666666 33334 899999999998753 3553333444558889999999999998654
Q ss_pred C------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHH
Q 010031 461 E------------TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504 (520)
Q Consensus 461 ~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 504 (520)
. +.++.+...++......|+ +|.++++++.+..|++|-...+
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 3 2345667677766667787 8999999999999999977654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-10 Score=101.42 Aligned_cols=183 Identities=10% Similarity=-0.014 Sum_probs=123.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHHHH
Q 010031 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE--K-D---LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPD-GTVFL 401 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~-~~~~~ 401 (520)
+...+..+...+.+.|++++|...|+.+.+ | + ...+..+..++...|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 334444555566666666666666666554 2 2 34566667777777777777777777776321 112 22555
Q ss_pred HHHHHHHc--------cCcHHHHHHHHHHcHhhcCCCCChhHH-----------------HHHHHHHhccCChHHHHHHH
Q 010031 402 AILTACWY--------SGQVKLALNFFDSMRFDYFIEPSVKHH-----------------TVVVNLLSRVGQVDKALNFI 456 (520)
Q Consensus 402 ~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~ 456 (520)
.+..++.. .|++++|+..|+++.+.. +.+.... ..+..+|.+.|++++|+..|
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 56666666 777777777777776533 1122222 56788899999999999999
Q ss_pred hhCCC-CCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHhcCCCCCcc---hhHHHHhhhhhccC
Q 010031 457 NKMPE-TPD----FVIWGALFCACRTH----------KDTKIAKIALQSSCSLNLSIPQ---AMSYCQTFMQQKGD 514 (520)
Q Consensus 457 ~~~~~-~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~ 514 (520)
+++.. .|+ ...+..+..++... |++++|+..++++++..|+++. +...++.++.+.|+
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 98764 343 44677777778766 9999999999999999999974 45556666665554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-10 Score=97.15 Aligned_cols=151 Identities=19% Similarity=0.108 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (520)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 456778888999999999999999987742 2356688889999999999999999999998532 4567788899999
Q ss_pred HhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 443 LSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+...|++++|.+.++++.. +.+...+..+...+...|++++|...++++++..|+++.++..++.++...|+.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHH
Confidence 9999999999999998764 4567888899999999999999999999999999999999999999999999854
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-09 Score=101.11 Aligned_cols=162 Identities=12% Similarity=0.011 Sum_probs=84.4
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--C--CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCCh-hHHH--
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVR--A--NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGT-- 335 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-- 335 (520)
.+..+...+...|++++|...+++....... + ...++..+...+...|++++|...+++.......++. ..+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 3455666667777777777777776653211 1 1234555566666777777777777766543211111 1111
Q ss_pred ---HHHHHHHhcCCHHHHHHHHhcCCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHH-HH
Q 010031 336 ---ALVDMYAKCGNIEAASLVFGETKEKD-------LLTWTAMIWGLAIHGRYEQAIQYFKKMMYS----GTEPDGT-VF 400 (520)
Q Consensus 336 ---~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~-~~ 400 (520)
..+..+...|++++|...++....+. ...+..+...+...|++++|...+++.... |..++.. .+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 12233556666666666666655421 113444555566666666666666655431 1111111 33
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcH
Q 010031 401 LAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
..+..++...|+.++|...+++..
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444445555566666655555544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=5.9e-11 Score=107.11 Aligned_cols=176 Identities=13% Similarity=0.019 Sum_probs=122.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCCHHHH
Q 010031 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGRYEQA 381 (520)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a 381 (520)
++++|...+... ...|...|++++|.+.|.+... .+ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 2345566777766666655433 11 34678888888889999999
Q ss_pred HHHHHHHHHCCC---CCC--HHHHHHHHHHHHcc-CcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHH
Q 010031 382 IQYFKKMMYSGT---EPD--GTVFLAILTACWYS-GQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDK 451 (520)
Q Consensus 382 ~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 451 (520)
+..|++..+... .+. ..++..+...|... |++++|+..+++..+...-..+ ..++..+..+|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 988888766211 111 24788888899996 9999999999998753211111 3568889999999999999
Q ss_pred HHHHHhhCCC-CCC---H-----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcch
Q 010031 452 ALNFINKMPE-TPD---F-----VIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 452 A~~~~~~~~~-~~~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
|+..++++.. .|+ . ..|..+..++...|++++|+..++++++++|+.+..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 9999998654 222 1 156777888999999999999999999999987764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-10 Score=102.17 Aligned_cols=199 Identities=10% Similarity=0.014 Sum_probs=121.2
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHc------CC-CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C--
Q 010031 297 FTVVSALSACAKVGALEAGVRVHNYISCN------DF-GLKGAIGTALVDMYAKCGNIEAASLVFGETKE-------K-- 360 (520)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~-- 360 (520)
.++..+...+...|++++|...++++.+. +. +....++..+..+|...|++++|.+.+++... +
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34455555556666666666666555433 11 12234455566666666666666666655432 1
Q ss_pred --ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhc----
Q 010031 361 --DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS------GTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDY---- 427 (520)
Q Consensus 361 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---- 427 (520)
...++..+...+...|++++|...++++.+. +-.|+. .++..+...+...|++++|..+++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2346777888888889999999888888763 113433 378888889999999999999998887421
Q ss_pred --CCCCC-hhHHHHHHHHHhccC------ChHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 010031 428 --FIEPS-VKHHTVVVNLLSRVG------QVDKALNFINKMPE-TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLN 495 (520)
Q Consensus 428 --~~~~~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 495 (520)
...+. ...+..+...+...+ .+.++...++.... .|+ ..++..+...+...|++++|...++++++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 11222 234444444443333 34455555555543 232 4578888899999999999999999998753
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.21 E-value=9.7e-11 Score=90.54 Aligned_cols=115 Identities=9% Similarity=-0.006 Sum_probs=100.2
Q ss_pred CCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHH
Q 010031 393 TEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWG 469 (520)
Q Consensus 393 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 469 (520)
+.|+.. .+......+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++... +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 566554 77788888999999999999999988532 45677889999999999999999999998765 45678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhh
Q 010031 470 ALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFM 509 (520)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 509 (520)
.+..++...|++++|+..|+++++++|+++.+...++.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998775
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.18 E-value=8.5e-10 Score=86.33 Aligned_cols=132 Identities=18% Similarity=0.220 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (520)
.|..++..+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.... +.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 56778888899999999999999998753 2355688888888999999999999999987532 44567888899999
Q ss_pred hccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 010031 444 SRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI 498 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 498 (520)
...|++++|.+.++++.. +.+...+..+...+...|++++|...++++++.+|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999988754 3467788889999999999999999999999998864
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.7e-10 Score=95.49 Aligned_cols=138 Identities=14% Similarity=0.058 Sum_probs=105.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (520)
.+.+..++...|++++|+..|++..+ ..|+ ...+..+...+...|++++|+..|+++.+.. +.+...+..+..+|
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 34488899999999999999999998 4564 5588999999999999999999999998632 34567888888888
Q ss_pred hccCC--hHHHHHHHhhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 444 SRVGQ--VDKALNFINKMPETPDF--VIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 444 ~~~g~--~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
...|+ .+.+...+++... |++ ..+.....++...|++++|+..|+++++++|++ .....+..+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLSS-PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHHHC---C-CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 76654 4566777777664 343 345556667788999999999999999999974 344444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.16 E-value=4.4e-09 Score=92.84 Aligned_cols=226 Identities=10% Similarity=0.052 Sum_probs=153.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 010031 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348 (520)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 348 (520)
+-..-.|.+..++.-. .+............+.+++...|++... ....|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 3445567777776632 2211122223334455666666665531 112233333443333 33333
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 349 AASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 349 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
|...|++... ++..++..+..++...|++++|++++.+.+..|..++ ...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666766553 4555667888999999999999999999877654234 4488888999999999999999999997
Q ss_pred hhcCCCC-----ChhHHHHHHHH--HhccC--ChHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 425 FDYFIEP-----SVKHHTVVVNL--LSRVG--QVDKALNFINKMPET-PDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 425 ~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
+ ..| +..+...++.+ ....| ++++|..+|+++... |+..+-..++.++.+.|++++|...++.+.+.
T Consensus 164 ~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 N---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred h---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 256 24455555555 33344 999999999998764 65444455555899999999999999988876
Q ss_pred ----------CCCCcchhHHHHhhhhhccC
Q 010031 495 ----------NLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 495 ----------~p~~~~~~~~l~~~~~~~g~ 514 (520)
+|+++.++..+..+....|+
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 58899999888777777776
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=117.13 Aligned_cols=194 Identities=11% Similarity=0.052 Sum_probs=95.1
Q ss_pred hccCChHHHHHHHHHHH--------HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHc
Q 010031 307 AKVGALEAGVRVHNYIS--------CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIH 375 (520)
Q Consensus 307 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 375 (520)
...|++++|...+++.. +.. +.+...+..+..+|...|++++|.+.|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45556666666666555 221 22344455555555555555555555555443 2344555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHH
Q 010031 376 GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALN 454 (520)
Q Consensus 376 ~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (520)
|++++|+..|++..+ ..|+ ...+..+..++...|++++ ++.|+++.+.. +.+...|..+..+|.+.|++++|++
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555 2332 2355555555555555555 55555554321 2233455555555555555555555
Q ss_pred HHhhCCC-CCC-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHhcCCCCCcchhHHHH
Q 010031 455 FINKMPE-TPD-FVIWGALFCACRTHKD-----TKIAKIALQSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 455 ~~~~~~~-~~~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~~~~l~ 506 (520)
.++++.. .|+ ...+..+..++...|+ .+...+..+...++.++++.......
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~ 614 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRA 614 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 5555543 333 3344444444444343 23333444444444444444443333
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-09 Score=108.75 Aligned_cols=159 Identities=9% Similarity=0.065 Sum_probs=118.0
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHH
Q 010031 344 CGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNF 419 (520)
Q Consensus 344 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 419 (520)
.|++++|.+.+++..+ .+...|..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3677778777777665 34567888888889999999999999998884 554 55888888889999999999999
Q ss_pred HHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhcC
Q 010031 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTH---KDTKIAKIALQSSCSL 494 (520)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 494 (520)
+++..+.. +.+...+..+..+|.+.|++++|++.+++... +.+...+..+..++... |++++|.+.++++++.
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99987532 34567888899999999999999999988654 34577888888888888 9999999999999999
Q ss_pred CCCCcchhHHHH
Q 010031 495 NLSIPQAMSYCQ 506 (520)
Q Consensus 495 ~p~~~~~~~~l~ 506 (520)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 998887776655
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.4e-08 Score=86.00 Aligned_cols=233 Identities=9% Similarity=0.031 Sum_probs=178.7
Q ss_pred HhCCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC--ChHHHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc
Q 010031 272 SQNGE-AEKALAMFFQMLDAGVRANDFTVVSALSACAKVG--ALEAGVRVHNYISCNDFGLKGAIGTALVDMY----AKC 344 (520)
Q Consensus 272 ~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 344 (520)
.+.|. .++|+..++.++..+ +-+...++.--..+...+ ++++++..++.+....+ -+..+|+.-..++ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhc
Confidence 34444 468999999988863 334455666666666777 89999999999987764 3455555444444 444
Q ss_pred ---CCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc----
Q 010031 345 ---GNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYE--QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ---- 412 (520)
Q Consensus 345 ---~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---- 412 (520)
+++++++++++.+.+ +|..+|+.-.-.+...|.++ ++++.++++++.... |...|+.-...+...|.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 788999999988876 47778888888888889888 999999999996433 66688877777777776
Q ss_pred --HHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHH-HHHHHhhCCC-----CCCHHHHHHHHHHHHHcCCHHHH
Q 010031 413 --VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK-ALNFINKMPE-----TPDFVIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 413 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A 484 (520)
++++++.++++.... +-|...|+.+..++.+.|+..+ +..+++++.. ..++..+..++.++.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 899999999988542 5567788888888988888554 5567777654 34678889999999999999999
Q ss_pred HHHHHHHhc-CCCCCcchhHHHHhhh
Q 010031 485 KIALQSSCS-LNLSIPQAMSYCQTFM 509 (520)
Q Consensus 485 ~~~~~~~~~-~~p~~~~~~~~l~~~~ 509 (520)
.++++++.+ .+|.....|.+.+..+
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHHHHHhccChHHHHHHHHHHhhc
Confidence 999999996 8999999998887654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.9e-09 Score=107.75 Aligned_cols=181 Identities=11% Similarity=0.050 Sum_probs=114.5
Q ss_pred HhCCChhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 010031 272 SQNGEAEKALAMFFQML--------DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343 (520)
Q Consensus 272 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (520)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...++++.+.+ +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56677777777777766 321 3344566666667777777777777777776654 2355666667777777
Q ss_pred cCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHH
Q 010031 344 CGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNF 419 (520)
Q Consensus 344 ~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 419 (520)
.|++++|.+.|++..+ | +...|..+..++...|++++ +..|+++.+ ..|+ ...|..+..++...|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777776654 2 45566777777777777777 777777766 3443 34666777777777777777777
Q ss_pred HHHcHhhcCCCCC-hhHHHHHHHHHhccCC--------hHHHHHHHhhCC
Q 010031 420 FDSMRFDYFIEPS-VKHHTVVVNLLSRVGQ--------VDKALNFINKMP 460 (520)
Q Consensus 420 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~ 460 (520)
|+++.+ +.|+ ...+..+..++...|+ +++|.+.+..+.
T Consensus 557 ~~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 557 LDEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 777653 2444 3456666666655333 555666665554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.07 E-value=3.3e-08 Score=95.51 Aligned_cols=377 Identities=11% Similarity=-0.014 Sum_probs=221.8
Q ss_pred cCC-ChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccC-ChhhHHHHH
Q 010031 75 LHK-SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS-LLSLGRGLH 152 (520)
Q Consensus 75 ~~~-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~ 152 (520)
+.| +++.|+.+|++... .+-. ++++.+..+|++... ..|+...|..-+....+.+ ..+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLK--KSYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 345 36777777766432 2211 899999999999987 3478888887777666655 346678888
Q ss_pred HHHHHh-CCC-CChhHHHHHHHHHH----hcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCC
Q 010031 153 CLIVKS-GVE-YDAFVRVHLADMYV----QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226 (520)
Q Consensus 153 ~~~~~~-~~~-~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 226 (520)
+..+.. |.. .+...|...+..+. ..++.+.+.++|++........-...|...... .+......+..++.+..
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh
Confidence 887765 432 35678887777654 346788899999998874211111122222111 11112222322222110
Q ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCC-------hhHHHHHHHHHHHcCCCCCHHH
Q 010031 227 KKNVASWVSLIDGFMR-KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE-------AEKALAMFFQMLDAGVRANDFT 298 (520)
Q Consensus 227 ~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~~~ 298 (520)
..|.. ...++++...+.. .+...|...+..-...+. .+.+..+|++++... +.++..
T Consensus 151 -----------~~y~~ar~~y~~~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~l 215 (493)
T 2uy1_A 151 -----------PIFQSSFQRYQQIQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEV 215 (493)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHH
Confidence 00000 0001222222222 122345544444332211 244667888887753 455667
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHhcCC----------C--CChhHH
Q 010031 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA-ASLVFGETK----------E--KDLLTW 365 (520)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~----------~--~~~~~~ 365 (520)
|...+.-+.+.|+++.|..++++.... +.+...+.. |....+.++ ...+.+... . .....|
T Consensus 216 W~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw 289 (493)
T 2uy1_A 216 YFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLR 289 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHH
Confidence 777777777888899999999988877 333333322 222111111 111221110 0 112456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHh
Q 010031 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY-SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444 (520)
Q Consensus 366 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (520)
...+....+.++.+.|..+|+++ .. ..++...|......-.. .++.+.|..+|+...+.. +-++..+...++...
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
Confidence 67777777788899999999999 32 22344455433322222 347999999999998654 233455667788888
Q ss_pred ccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 445 RVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
+.|+.+.|..+|+++.. ....|...+.--...|+.+.+..+++++++
T Consensus 366 ~~~~~~~aR~l~er~~k--~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 366 RIGDEENARALFKRLEK--TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHTCHHHHHHHHHHSCC--BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999853 677888888887889999999999999985
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-09 Score=96.61 Aligned_cols=162 Identities=10% Similarity=0.055 Sum_probs=122.9
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcC
Q 010031 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428 (520)
Q Consensus 350 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 428 (520)
....+......+...+..+...+...|++++|...|+++.+ ..|+ ...+..+...+...|++++|...++++...
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 33344443334455667777888889999999999999888 4564 447888888889999999999999988743
Q ss_pred CCCChhHH-HHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC--cchhH
Q 010031 429 IEPSVKHH-TVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI--PQAMS 503 (520)
Q Consensus 429 ~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~ 503 (520)
.|+.... ......+.+.++.++|++.+++... +.+...+..+..++...|++++|+..++++++.+|++ +.++.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 4554332 2333446677888888888887654 4457788888889999999999999999999999988 88899
Q ss_pred HHHhhhhhccCCC
Q 010031 504 YCQTFMQQKGDGR 516 (520)
Q Consensus 504 ~l~~~~~~~g~~~ 516 (520)
.++.++...|+.+
T Consensus 260 ~l~~~~~~~g~~~ 272 (287)
T 3qou_A 260 TFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHHcCCCC
Confidence 9999999888755
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.04 E-value=2e-09 Score=97.80 Aligned_cols=199 Identities=13% Similarity=0.029 Sum_probs=115.5
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010031 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK-VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352 (520)
Q Consensus 274 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 352 (520)
.|++++|.+++++..+.. +.. +.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 355666777776665431 110 111 35555555555543 234555666666666
Q ss_pred HHhcCCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHccCcHHHHHH
Q 010031 353 VFGETKE-----KD----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG---TEPD--GTVFLAILTACWYSGQVKLALN 418 (520)
Q Consensus 353 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a~~ 418 (520)
.|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 5554432 11 2356666777777777777777777765421 0111 2356666667766 77777777
Q ss_pred HHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHhhCCC----CCC----HHHHHHHHHHHHHcCCHHHHHH
Q 010031 419 FFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALNFINKMPE----TPD----FVIWGALFCACRTHKDTKIAKI 486 (520)
Q Consensus 419 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~ 486 (520)
.+++......-..+ ..++..+..+|.+.|++++|++.+++... .++ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77776542210111 34566777777777888887777776543 111 1244555556666778888888
Q ss_pred HHHHHhcCCCCCcc
Q 010031 487 ALQSSCSLNLSIPQ 500 (520)
Q Consensus 487 ~~~~~~~~~p~~~~ 500 (520)
.+++++ ++|+.+.
T Consensus 217 ~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 217 CVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHT-TSTTSTT
T ss_pred HHHHHh-CCCCCCC
Confidence 888887 7776554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.01 E-value=7.9e-09 Score=89.11 Aligned_cols=185 Identities=11% Similarity=0.001 Sum_probs=107.7
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCh----hHHHHH
Q 010031 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLK--GAIGTALVDMYAKCGNIEAASLVFGETKE--KDL----LTWTAM 368 (520)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~l 368 (520)
..+......+...|++++|...|+.+.+...... ...+..+..+|.+.|++++|...|+++.+ |+. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3444455566677777777777777765432211 23455566666666666666666666543 221 133333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-hhHH-----------
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHH----------- 436 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~----------- 436 (520)
..++...+.. .+. .|..+...+...|++++|...|+++.+.. |+ ...+
T Consensus 85 g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 85 GLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHHHHHH
Confidence 4444331100 000 01111112223456666666666665422 22 1111
Q ss_pred ------HHHHHHHhccCChHHHHHHHhhCCC-CCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcch
Q 010031 437 ------TVVVNLLSRVGQVDKALNFINKMPE-TPD-F---VIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 437 ------~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
..+...|.+.|++++|+..++++.. .|+ + ..+..+..++.+.|+.++|...++++....|++...
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 3466778899999999999998765 343 2 467788889999999999999999999999987654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.1e-09 Score=93.28 Aligned_cols=154 Identities=12% Similarity=0.081 Sum_probs=125.2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-hh
Q 010031 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VK 434 (520)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~ 434 (520)
.+...+..+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++|+..|+++.+..+-.|. ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 45667778888999999999999999999984 454 458888889999999999999999999865432233 35
Q ss_pred HHHHHHHHHhc--------cCChHHHHHHHhhCCC-CCC-HHHH-----------------HHHHHHHHHcCCHHHHHHH
Q 010031 435 HHTVVVNLLSR--------VGQVDKALNFINKMPE-TPD-FVIW-----------------GALFCACRTHKDTKIAKIA 487 (520)
Q Consensus 435 ~~~~l~~~~~~--------~g~~~~A~~~~~~~~~-~~~-~~~~-----------------~~l~~~~~~~g~~~~A~~~ 487 (520)
.+..+..++.+ .|++++|+..|+++.. .|+ ...+ ..+...+...|++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 67788888988 9999999999998765 333 2333 4567779999999999999
Q ss_pred HHHHhcCCCCC---cchhHHHHhhhhhccCC
Q 010031 488 LQSSCSLNLSI---PQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 488 ~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 515 (520)
++++++..|++ +.++..++.+|...|+.
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~ 201 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQ 201 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhccc
Confidence 99999999985 45899999999887554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-09 Score=95.29 Aligned_cols=197 Identities=10% Similarity=0.038 Sum_probs=113.8
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHHc------C-C
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDA------GVRA-NDFTVVSALSACAKVGALEAGVRVHNYISCN------D-F 327 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~ 327 (520)
.++..+...|...|++++|+..++++.+. +-.| ...++..+...+...|++++|...+.++.+. . .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35556666666666666666666666543 1112 2345566666677777777777777666543 1 1
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----
Q 010031 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-----------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS----- 391 (520)
Q Consensus 328 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 391 (520)
+.....+..+...|...|++++|...+++..+. ...++..+...+...|++++|...++++.+.
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 123455566677777777777777776655431 2346777888888888888888888887753
Q ss_pred --CCCCCHH-HHHHHHHHHHccC------cHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 392 --GTEPDGT-VFLAILTACWYSG------QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 392 --~~~p~~~-~~~~l~~~~~~~g------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
...+... .+..+.......+ .+..+...++.... ..+....++..+..+|.+.|++++|.+.+++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1222222 3333333333222 23344444433321 112234577888999999999999999988753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-09 Score=86.95 Aligned_cols=122 Identities=11% Similarity=-0.047 Sum_probs=97.0
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-
Q 010031 384 YFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE- 461 (520)
Q Consensus 384 ~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 461 (520)
.|+++.. +.|+.. .+..+...+...|++++|...|+++.... +.+...|..+..+|.+.|++++|++.++++..
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455544 455444 67777888889999999999999987532 44677888899999999999999999998764
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhh
Q 010031 462 -TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFM 509 (520)
Q Consensus 462 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 509 (520)
+.++..+..+..++...|++++|...+++++++.|++|........+.
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 133 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVS 133 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHH
Confidence 345678888999999999999999999999999999887765544443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.97 E-value=6e-09 Score=85.97 Aligned_cols=155 Identities=10% Similarity=-0.039 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHc
Q 010031 334 GTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA-CWY 409 (520)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~ 409 (520)
...+...+...|++++|...+++..+ .+...+..+..++...|++++|+..++++... .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 33455566667777777777776665 34556666677777777777777777666552 3333222211111 111
Q ss_pred cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC---HHHHHHHHHHHHHcCCHHHHH
Q 010031 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD---FVIWGALFCACRTHKDTKIAK 485 (520)
Q Consensus 410 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~~~A~ 485 (520)
.+....|...+++..+.. +.+...+..+..++...|++++|+..++++.. .|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 112223556666655321 22355666666666677777777776666543 332 335666666666677776677
Q ss_pred HHHHHHh
Q 010031 486 IALQSSC 492 (520)
Q Consensus 486 ~~~~~~~ 492 (520)
..|++++
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-08 Score=85.59 Aligned_cols=90 Identities=9% Similarity=-0.013 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCc
Q 010031 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQ 412 (520)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 412 (520)
+..+...+...|++++|...|++...++...|..+..++...|++++|+..|++..+. .| +...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHccc
Confidence 3455666677777777777777777666777777777777777777777777777663 33 34466667777777777
Q ss_pred HHHHHHHHHHcHh
Q 010031 413 VKLALNFFDSMRF 425 (520)
Q Consensus 413 ~~~a~~~~~~~~~ 425 (520)
+++|.+.+++..+
T Consensus 87 ~~~A~~~~~~al~ 99 (213)
T 1hh8_A 87 YDLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777664
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.96 E-value=7.6e-09 Score=79.52 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHH
Q 010031 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCA 474 (520)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 474 (520)
...+..+...+...|++++|.+.++++.... +.+...+..++.++.+.|++++|+..++++.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 3467777778888888888888888887532 34566778888888889999999988888654 3467788889999
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 475 CRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 475 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
+...|++++|...++++++..|+++.++..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999887765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-08 Score=86.54 Aligned_cols=152 Identities=13% Similarity=-0.023 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh-hHHHHHHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVN 441 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~ 441 (520)
+..++..+...|++++|+..|+++.+.... |. ...+..+..++...|++++|+..|+++.+..+-.+.. ..+..+..
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~ 86 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL 86 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence 344455566666666666666666653211 11 1355555666666666666666666665432111111 12333333
Q ss_pred HHh------------------ccCChHHHHHHHhhCCC-CCCH-HHH-----------------HHHHHHHHHcCCHHHH
Q 010031 442 LLS------------------RVGQVDKALNFINKMPE-TPDF-VIW-----------------GALFCACRTHKDTKIA 484 (520)
Q Consensus 442 ~~~------------------~~g~~~~A~~~~~~~~~-~~~~-~~~-----------------~~l~~~~~~~g~~~~A 484 (520)
++. ..|++++|+..|+++.. .|+. ..+ ..+...+.+.|++++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A 166 (225)
T 2yhc_A 87 TNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAV 166 (225)
T ss_dssp HHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 333 46899999999998765 3442 222 2345568899999999
Q ss_pred HHHHHHHhcCCCCCc---chhHHHHhhhhhccCCC
Q 010031 485 KIALQSSCSLNLSIP---QAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 485 ~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~ 516 (520)
+..++++++..|+++ .++..++.++.+.|+.+
T Consensus 167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence 999999999999987 67999999999999865
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.2e-09 Score=81.62 Aligned_cols=116 Identities=14% Similarity=0.038 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHH
Q 010031 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCA 474 (520)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 474 (520)
...+..+...+...|++++|...+++..+. .+.+...+..+..+|...|++++|++.++++.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 347777777888888888888888887642 133567788888888888899998888887654 3457788889999
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 475 CRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 475 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
+...|++++|...++++++.+|+++.++..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999988774
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.95 E-value=4e-09 Score=87.03 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (520)
.+..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|...++++... .|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 455677788999999999999999877 3564 458888999999999999999999998753 3344433333222
Q ss_pred -HhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC--cchhHHHHhhhhhccCCC
Q 010031 443 -LSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI--PQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 443 -~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~ 516 (520)
+...+...+|+..+++... .| +...+..+..++...|++++|...++++++.+|+. +.++..++.++...|+.+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 2233344457888887654 34 57889999999999999999999999999999975 569999999999999876
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.5e-08 Score=84.08 Aligned_cols=181 Identities=12% Similarity=-0.012 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHHcC----CHHHHHHHHHHH
Q 010031 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHG----RYEQAIQYFKKM 388 (520)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~ 388 (520)
+|...|++..+.| ++..+..+...|...+++++|.+.|++..+ .+...+..|...|.. + ++++|..+|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4566777776654 566677777777778888888888877655 355666777776666 5 788888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHcHhhcCCCCC---hhHHHHHHHHHhc----cCChHHHHHHHh
Q 010031 389 MYSGTEPDGTVFLAILTACWY----SGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSR----VGQVDKALNFIN 457 (520)
Q Consensus 389 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~ 457 (520)
.+.| +...+..|...|.. .+++++|.++|++..+ . .|+ +..+..|...|.. .+++++|+++|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~--~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-D--SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-S--TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-c--CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7643 45566666666666 6778888888887763 2 232 5666777777776 677888888887
Q ss_pred hCCCC-CCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhcCCCCCcchhHHHH
Q 010031 458 KMPET-PDFVIWGALFCACRTH-K-----DTKIAKIALQSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 458 ~~~~~-~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p~~~~~~~~l~ 506 (520)
+.... +++..+..+...|... | +.++|...++++.+..+ +.+...++
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~ 207 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFD 207 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence 76543 4555666666666553 3 77888888888777643 34444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-08 Score=78.94 Aligned_cols=116 Identities=9% Similarity=-0.063 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHH
Q 010031 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCAC 475 (520)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 475 (520)
..+..+...+...|++++|...+++..... +.+...+..+..++...|++++|++.+++... +.+...+..+..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 466677777888888888888888877532 34567778888888889999999988888654 34577888888999
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCC
Q 010031 476 RTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 476 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 515 (520)
...|++++|...++++++..|+++.++..++.++...|+-
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999988874
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.91 E-value=7e-09 Score=82.50 Aligned_cols=105 Identities=11% Similarity=-0.060 Sum_probs=89.5
Q ss_pred CCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHH
Q 010031 393 TEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWG 469 (520)
Q Consensus 393 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 469 (520)
+.|+.. .+..+...+.+.|++++|...|+++.... +.+...|..+..+|.+.|++++|++.|+++.. +.++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 456554 77788888999999999999999998532 44577889999999999999999999998765 34577899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q 010031 470 ALFCACRTHKDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 499 (520)
.+..++...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999865
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-09 Score=85.38 Aligned_cols=139 Identities=7% Similarity=-0.017 Sum_probs=92.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcH
Q 010031 338 VDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQV 413 (520)
Q Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 413 (520)
..++...|++++|++.++..... +...+..+...|...|++++|++.|++.++ +.|+ ..+|..+..++...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCch
Confidence 34455566777777777666553 334566677778888888888888888877 4554 44777777888888888
Q ss_pred HHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHH-HhhCCC-CC-CHHHHHHHHHHHHHcCC
Q 010031 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF-INKMPE-TP-DFVIWGALFCACRTHKD 480 (520)
Q Consensus 414 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~-~~-~~~~~~~l~~~~~~~g~ 480 (520)
++|+..|++..+.. +-+...+..+..+|.+.|++++|.+. ++++.. .| ++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888877521 23456777788888888887766554 465543 33 45566666666666654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=6.4e-08 Score=86.74 Aligned_cols=163 Identities=11% Similarity=0.046 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHH-HHH
Q 010031 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWT-AMI 369 (520)
Q Consensus 293 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~-~l~ 369 (520)
+.+...+..+...+...|++++|...++++.+... .+...+..+..++...|++++|...++.+.. |+..... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 33445566666677778888888888888776653 3556677777888888888888888887765 4333222 222
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC
Q 010031 370 WGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (520)
Q Consensus 370 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (520)
..+...++.++|...+++..+. .|+ ...+..+...+...|++++|...+.++.+...-..+...+..++.+|...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 3355666677777777777763 443 4477777777777888888888887777532111114566777777777777
Q ss_pred hHHHHHHHhh
Q 010031 449 VDKALNFINK 458 (520)
Q Consensus 449 ~~~A~~~~~~ 458 (520)
.++|...+++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 7777776665
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.1e-08 Score=77.18 Aligned_cols=128 Identities=15% Similarity=0.268 Sum_probs=73.6
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (520)
.|..+...+...|++++|..+++++...+ +.+...+..+...+...|+++.|...++++.+.+. .+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~----------- 69 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSA----------- 69 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH-----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-Cch-----------
Confidence 34556666666777777777777766543 33445555566666666666666666666654431 122
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 010031 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422 (520)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 422 (520)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 70 --------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 70 --------------------EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp --------------------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 334444555555566666666666655532 12344555566666666666666666666
Q ss_pred cH
Q 010031 423 MR 424 (520)
Q Consensus 423 ~~ 424 (520)
+.
T Consensus 129 ~~ 130 (136)
T 2fo7_A 129 AL 130 (136)
T ss_dssp HH
T ss_pred HH
Confidence 55
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.3e-08 Score=84.93 Aligned_cols=184 Identities=14% Similarity=0.063 Sum_probs=119.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 010031 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF-TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (520)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (520)
+......+...|++++|+..|++.... .|+.. .+.. . .... . ..........+..+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~-~~~~--~---------------~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T-NVDK--N---------------SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H-HSCT--T---------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h-hhcc--h---------------hhhhHHHHHHHHHHHH
Confidence 334455677888888888888888775 34332 2211 0 0000 0 0011223344778888
Q ss_pred hcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCc--HHHH
Q 010031 343 KCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQ--VKLA 416 (520)
Q Consensus 343 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~a 416 (520)
+.|++++|...|++..+ .+...+..+..++...|++++|+..|++..+ +.|+ ..++..+...+...|+ ...+
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 88999999988887765 3667888899999999999999999999988 4665 4478778777766554 3445
Q ss_pred HHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHH
Q 010031 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFC 473 (520)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~ 473 (520)
...++.... ..|....+.....++...|++++|+..|+++.. .|+......+..
T Consensus 144 ~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 144 ETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555431 122223344556677788999999999998775 677665544443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.87 E-value=8e-08 Score=81.78 Aligned_cols=171 Identities=10% Similarity=-0.004 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC----CHHHHHHHHh
Q 010031 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG----NIEAASLVFG 355 (520)
Q Consensus 280 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 355 (520)
|++.|++..+.| ++..+..+...+...+++++|...|++..+.+ ++..+..|...|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555543 34444455555555556666666665555543 33444445555554 4 5556665555
Q ss_pred cCCC-CChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc----cCcHHHHHHHHHHcHh
Q 010031 356 ETKE-KDLLTWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWY----SGQVKLALNFFDSMRF 425 (520)
Q Consensus 356 ~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 425 (520)
+..+ .+...+..|...|.. .+++++|..+|++..+.|... +...+..|...|.. .+++++|..+|++..+
T Consensus 78 ~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 78 KAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 5443 244455555555544 455566666666555532110 13344455555554 4556666666655543
Q ss_pred hcCCCCChhHHHHHHHHHhcc-C-----ChHHHHHHHhhCC
Q 010031 426 DYFIEPSVKHHTVVVNLLSRV-G-----QVDKALNFINKMP 460 (520)
Q Consensus 426 ~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~ 460 (520)
. +.+...+..|..+|... | ++++|+.++++..
T Consensus 158 ~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 158 L---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp T---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred c---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 1 22333444455555432 1 5555555555543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.2e-08 Score=82.17 Aligned_cols=137 Identities=10% Similarity=-0.051 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (520)
.+..+...+...|++++|...|++. +.|+...+..+...+...|++++|.+.+++..... +.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 3455677788889999999888876 35677888888888889999999999998887532 44567888888899
Q ss_pred hccCChHHHHHHHhhCCC--CCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 444 SRVGQVDKALNFINKMPE--TPD----------------FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~--~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
.+.|++++|++.++++.. +.+ ...+..+..++...|++++|...+++++++.|++.......
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 161 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence 999999999988887643 111 26778888888899999999999999999988765544333
Q ss_pred H
Q 010031 506 Q 506 (520)
Q Consensus 506 ~ 506 (520)
+
T Consensus 162 a 162 (213)
T 1hh8_A 162 A 162 (213)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.84 E-value=2.6e-07 Score=89.22 Aligned_cols=365 Identities=11% Similarity=0.013 Sum_probs=215.1
Q ss_pred cc-CchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCC--CCcchHHHHHHHHHhCCC-hhHHHHH
Q 010031 41 SN-STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP--KNLHIFNVLIRGLAENSH-FQSCISH 116 (520)
Q Consensus 41 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~-~~~A~~~ 116 (520)
.| ++..|+.+++..+..- |. |+++.+..+|++... |++..|...+....+.++ .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 3777888888776552 22 899999999998765 788899998887777653 4567788
Q ss_pred HHHhhhC-CCCC-CcccHHHHHHHHh----ccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccC
Q 010031 117 FVFMLRL-SVRP-NRLTYPFVSKSVA----SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190 (520)
Q Consensus 117 ~~~m~~~-~~~p-~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 190 (520)
|+..... |..| +...|...+..+. ..++.+.+.++|+..++.....-...|......- .......+..++.+.
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHH
Confidence 8887763 5434 4445665555443 2467888999999998732111112333222221 111222233332221
Q ss_pred CCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC----CCHHHHHHHHHHHHhcC--C-----HHHHHHHHhcCCC-
Q 010031 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKG--D-----LKKAGELFEQMPE- 258 (520)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~- 258 (520)
. +.+..|..+++.+.. .+...|...+..-...+ - .+.+..+|+++..
T Consensus 150 ~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~ 208 (493)
T 2uy1_A 150 L---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS 208 (493)
T ss_dssp H---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred h---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc
Confidence 0 112222222222211 13345555554433221 1 2345566666543
Q ss_pred --CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcC----------
Q 010031 259 --KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND---------- 326 (520)
Q Consensus 259 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------- 326 (520)
.....|...+..+...|+.++|..+|++.... |....+... |....+.+.. ++.+.+.-
T Consensus 209 ~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~---y~~~~e~~~~---~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY---YGLVMDEEAV---YGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH---HHHHTTCTHH---HHHHHHHTC---------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH---HHhhcchhHH---HHHHHHHHHhhccchhhh
Confidence 23566877888888999999999999999987 433322221 2211111111 22222110
Q ss_pred --CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC--hhHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 010031 327 --FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD--LLTWTAMIWGLAI-HGRYEQAIQYFKKMMYSGTEPD-GTVF 400 (520)
Q Consensus 327 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~p~-~~~~ 400 (520)
......+|...+..+.+.++.+.|+.+|+....|+ ...|...+..-.. .++.+.|..+|+...+.. |+ ...+
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~ 357 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLK 357 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHH
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHH
Confidence 01122456667777777888999999999884332 2334322222222 347999999999998852 43 4455
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
...+......|+.+.|..+|+++. .....|...+..-.+.|+.+.+.+++++..
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666777778899999999999973 246778888887788899999998887754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-08 Score=79.64 Aligned_cols=116 Identities=11% Similarity=-0.047 Sum_probs=90.1
Q ss_pred CCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHH
Q 010031 393 TEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWG 469 (520)
Q Consensus 393 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 469 (520)
+.|+.. .+..+...+...|++++|...|+++.... +.+...|..+..+|.+.|++++|+..++++.. +.++..+.
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 345433 56666777888899999999998887532 34567788888899999999999999988664 34567788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 470 ALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
.+..++...|++++|...+++++++.|+++........+..
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 88888999999999999999999999988877665554443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-08 Score=101.01 Aligned_cols=135 Identities=9% Similarity=-0.068 Sum_probs=103.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHH
Q 010031 375 HGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 375 ~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (520)
.|++++|+..+++..+ ..|+ ...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4788999999999887 4554 5688899999999999999999999998532 345678899999999999999999
Q ss_pred HHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 454 NFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 454 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
+.+++... +.+...+..+..++...|++++|.+.++++++++|+++.++..++.++...+
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 99998765 3457889999999999999999999999999999999999999999999993
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=4.4e-08 Score=74.27 Aligned_cols=112 Identities=12% Similarity=-0.090 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHH
Q 010031 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCA 474 (520)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 474 (520)
...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|...+++... +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3456667777778888888888888877432 34566777888888888888888888887654 3457788888899
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 475 CRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 475 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
+...|++++|...++++++.+|+++..+..++.+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999888877653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.1e-08 Score=81.68 Aligned_cols=132 Identities=10% Similarity=0.044 Sum_probs=105.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH-HhccCCh-
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL-LSRVGQV- 449 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 449 (520)
...|++++|...+++..+. .| +...+..+...+...|++++|...++++.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 4568889999999998874 44 55688889999999999999999999988543 3456778888888 7789998
Q ss_pred -HHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 450 -DKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 450 -~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
++|+..++++.. +.+...+..+...+...|++++|...++++++.+|+++.....+..+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 999999998765 34577888899999999999999999999999999998776555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.7e-08 Score=76.76 Aligned_cols=112 Identities=13% Similarity=-0.060 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHH
Q 010031 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCAC 475 (520)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 475 (520)
..+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++... +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 356667777888888888888888887532 44567888888999999999999999988665 34577888899999
Q ss_pred HHcCCHHHHHHHHHHHhcCC------CCCcchhHHHHhhhhh
Q 010031 476 RTHKDTKIAKIALQSSCSLN------LSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 476 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~ 511 (520)
...|++++|...++++++++ |+++.+...+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999 9999988888877654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.79 E-value=6e-08 Score=84.47 Aligned_cols=139 Identities=10% Similarity=-0.031 Sum_probs=101.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC--hhHHHHHHHH
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNL 442 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~ 442 (520)
+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.... .. .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHH
Confidence 344566777888888888888877663 45544444555577888999999999886652 11 111 2366778889
Q ss_pred HhccCChHHHHHHHhhCCCC---CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 443 LSRVGQVDKALNFINKMPET---PD--FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
+.+.|++++|++.|++.... |. ...+.....++.+.|+.++|...|+++++.+|+ +.+...|..-
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 99999999999999987542 32 346677778899999999999999999999998 7777666543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=4.8e-07 Score=81.38 Aligned_cols=158 Identities=16% Similarity=0.009 Sum_probs=119.9
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC-----C----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 010031 337 LVDMYAKCGNIEAASLVFGETKEK-----D----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PD----GTVFLA 402 (520)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~ 402 (520)
.+..+...|++++|...+++..+. + ...+..+...+...|++++|+..++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466788899999999998876541 1 113334666677778999999999999884222 22 236888
Q ss_pred HHHHHHccCcHHHHHHHHHHcHhhc----CCCCC-hhHHHHHHHHHhccCChHHHHHHHhhCCC-------CCC-HHHHH
Q 010031 403 ILTACWYSGQVKLALNFFDSMRFDY----FIEPS-VKHHTVVVNLLSRVGQVDKALNFINKMPE-------TPD-FVIWG 469 (520)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~-~~~~~ 469 (520)
+...|...|++++|..+++++.+.. +..+. ..++..++.+|.+.|++++|++.+++... .+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999987421 11122 34788899999999999999999987653 122 56888
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHhcC
Q 010031 470 ALFCACRTHK-DTKIAKIALQSSCSL 494 (520)
Q Consensus 470 ~l~~~~~~~g-~~~~A~~~~~~~~~~ 494 (520)
.+..++.+.| ++++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8999999999 579999999999875
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.6e-08 Score=79.49 Aligned_cols=109 Identities=14% Similarity=-0.084 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHH
Q 010031 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCAC 475 (520)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 475 (520)
..+..+...+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..+++... +.+...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 356666667777777777777777776432 33556777777788888888888888877654 33466778888888
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 476 RTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 476 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
...|++++|+..++++++++|+++..+...+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 888888888888888888888888855544433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=7.3e-06 Score=73.92 Aligned_cols=235 Identities=10% Similarity=0.039 Sum_probs=167.4
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC-ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C-C
Q 010031 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC-G-N 346 (520)
Q Consensus 270 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~ 346 (520)
...+.+..++|++++++++..+ +-+...++.--..+...| .++++..+++.+..... -+..+|+.-.-++... + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCC
Confidence 3444555678999999998864 334455555555556667 58999999999987663 4666776666666665 6 8
Q ss_pred HHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc---
Q 010031 347 IEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYE--------QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ--- 412 (520)
Q Consensus 347 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--- 412 (520)
+++++++++.+.+ +|..+|+-..-.+...|.++ ++++.++++++.... |...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 8899999998887 35667776666666655555 899999999985432 66688888777777775
Q ss_pred ----HHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCCh--------------------HHHHHHHhhCCC-------
Q 010031 413 ----VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV--------------------DKALNFINKMPE------- 461 (520)
Q Consensus 413 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~------- 461 (520)
++++++.++++.... +-|...|+.+-..+.+.|+. .+..++..++..
T Consensus 220 ~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred chHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 789999998887532 45567777777777776654 445555555543
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCCCCcchhHHHHhhh
Q 010031 462 -TPDFVIWGALFCACRTHKDTKIAKIALQSSC-SLNLSIPQAMSYCQTFM 509 (520)
Q Consensus 462 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~ 509 (520)
.+++..+..++..|...|+.++|.++++.+. +.+|-....|.+.+..+
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~~ 347 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRREC 347 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHhh
Confidence 1567788889999999999999999999997 67998888887776543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=9.8e-08 Score=75.84 Aligned_cols=114 Identities=14% Similarity=-0.035 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHH
Q 010031 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWG 469 (520)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 469 (520)
+...+..+...+...|++++|.+.+++..+ ..|+ ...+..+..+|...|++++|++.+++... +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 344666667777777777777777777763 2454 56677788888888888888888877654 33567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 470 ALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
.+..++...|++++|...++++++++|+++.++..++.+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 8888999999999999999999999999999998888876654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.5e-07 Score=82.28 Aligned_cols=162 Identities=14% Similarity=-0.036 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Ch------hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKE--K-DL------LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT---EPD--GT 398 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~ 398 (520)
.+...+..+...|++++|.+.+.+..+ + .. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334456677788888888877764332 1 11 2234455666777899999999988875321 122 33
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHhhCCC-C------C-CH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQVDKALNFINKMPE-T------P-DF 465 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~------~-~~ 465 (520)
+++.+...|...|++++|...++++.+.....|+ ..++..++.+|.+.|++++|++.+++... . . -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888889999999999999887632111222 25778888999999999999999887653 1 1 15
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHhcC
Q 010031 466 VIWGALFCACRTHKDTKIA-KIALQSSCSL 494 (520)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 494 (520)
.++..+..++.+.|++++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6778888889999999999 7888888764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1e-06 Score=79.23 Aligned_cols=150 Identities=7% Similarity=0.006 Sum_probs=114.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHH
Q 010031 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGT----VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHH 436 (520)
Q Consensus 366 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~ 436 (520)
...+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..++++.....-.++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346778899999999999999987422 22221 2334666677788999999999999852222233 2368
Q ss_pred HHHHHHHhccCChHHHHHHHhhCCC-------C-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC------cch
Q 010031 437 TVVVNLLSRVGQVDKALNFINKMPE-------T-PD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI------PQA 501 (520)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~ 501 (520)
+.++.+|...|++++|+..++++.. . +. ..++..+...|.+.|++++|...+++++++.++. +.+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999988762 1 11 2377888899999999999999999999876543 678
Q ss_pred hHHHHhhhhhccCC
Q 010031 502 MSYCQTFMQQKGDG 515 (520)
Q Consensus 502 ~~~l~~~~~~~g~~ 515 (520)
+..+|.++...|+.
T Consensus 239 ~~~lg~~~~~~g~~ 252 (293)
T 3u3w_A 239 YYQRGECLRKLEYE 252 (293)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCc
Confidence 89999999999953
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.70 E-value=9.1e-08 Score=80.78 Aligned_cols=154 Identities=13% Similarity=0.028 Sum_probs=99.2
Q ss_pred hcCCHHHHHH---HHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCcHH
Q 010031 343 KCGNIEAASL---VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY----SGTEPD-GTVFLAILTACWYSGQVK 414 (520)
Q Consensus 343 ~~~~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~ 414 (520)
..|++++|.+ .+.........++..+...+...|++++|...+++..+ .+..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44332223445667777777778888888887777655 122222 236677777788888888
Q ss_pred HHHHHHHHcHhhcCCCC-C----hhHHHHHHHHHhccCChHHHHHHHhhCCC----CCCH----HHHHHHHHHHHHcCCH
Q 010031 415 LALNFFDSMRFDYFIEP-S----VKHHTVVVNLLSRVGQVDKALNFINKMPE----TPDF----VIWGALFCACRTHKDT 481 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~----~~~~~l~~~~~~~g~~ 481 (520)
+|.+.+++......-.+ + ...+..+..++...|++++|...+++... .++. .++..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888887654311112 1 34567778888888888888888877542 1222 2356677778888888
Q ss_pred HHHHHHHHHHhcCCC
Q 010031 482 KIAKIALQSSCSLNL 496 (520)
Q Consensus 482 ~~A~~~~~~~~~~~p 496 (520)
++|...+++++++..
T Consensus 164 ~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 164 LEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888887643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-07 Score=85.83 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=46.2
Q ss_pred cCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CC--CHHHHHHHHHHhhccCChHHHHH
Q 010031 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV---RA--NDFTVVSALSACAKVGALEAGVR 317 (520)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p--~~~~~~~l~~~~~~~~~~~~a~~ 317 (520)
.+++++|...|. .....|...|++++|...|.+..+... .+ -..++..+...|...|++++|..
T Consensus 29 ~~~~~~A~~~~~-----------~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYA-----------KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 466777666654 346778888888888888887665310 11 12356666667777777777777
Q ss_pred HHHHHHH
Q 010031 318 VHNYISC 324 (520)
Q Consensus 318 ~~~~~~~ 324 (520)
.+++..+
T Consensus 98 ~~~~Al~ 104 (307)
T 2ifu_A 98 YIEKASV 104 (307)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.7e-08 Score=78.24 Aligned_cols=88 Identities=8% Similarity=-0.082 Sum_probs=79.1
Q ss_pred CCCC-hhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 429 IEPS-VKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 429 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
+.|+ ...+..+...+.+.|++++|+..|+++.. +.++..|..+..++...|++++|+..|+++++++|+++.++..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3454 45778889999999999999999999775 45688999999999999999999999999999999999999999
Q ss_pred HhhhhhccCCC
Q 010031 506 QTFMQQKGDGR 516 (520)
Q Consensus 506 ~~~~~~~g~~~ 516 (520)
|.+|.+.|+.+
T Consensus 111 g~~~~~lg~~~ 121 (151)
T 3gyz_A 111 GQCQLRLKAPL 121 (151)
T ss_dssp HHHHHHTTCHH
T ss_pred HHHHHHcCCHH
Confidence 99999999855
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.66 E-value=7.7e-08 Score=88.31 Aligned_cols=145 Identities=12% Similarity=-0.054 Sum_probs=109.4
Q ss_pred CHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHH
Q 010031 346 NIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD----------------GTVFLAILTA 406 (520)
Q Consensus 346 ~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----------------~~~~~~l~~~ 406 (520)
++++|...++.... | +...+..+...+.+.|++++|+..|++..+. .|+ ...|..+..+
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444332 2 4567888889999999999999999999884 454 3688888888
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 484 (520)
+.+.|++++|+..++++.+.. +.+...+..+..+|...|++++|+..|+++.. +.+...+..+..++...|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999998887532 34567888888888888999999888888654 34566788888888888888888
Q ss_pred -HHHHHHHhcC
Q 010031 485 -KIALQSSCSL 494 (520)
Q Consensus 485 -~~~~~~~~~~ 494 (520)
...++++++.
T Consensus 284 ~~~~~~~~~~~ 294 (336)
T 1p5q_A 284 EKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 5577777754
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.65 E-value=3e-07 Score=82.70 Aligned_cols=153 Identities=7% Similarity=0.001 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCC--CCC--hh
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-G----TVFLAILTACWYSGQVKLALNFFDSMRFDYFI--EPS--VK 434 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~--~~ 434 (520)
.+...+..+...|++++|.+.+++..+...... . ..+..+...+...|++++|+..+++......- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567788899999999999999887532211 1 12344555677889999999999988642211 111 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhCCC----CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC------Cc
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKMPE----TPD-----FVIWGALFCACRTHKDTKIAKIALQSSCSLNLS------IP 499 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 499 (520)
+++.++..|...|++++|+..++++.. .|+ ..++..+..+|...|++++|...+++++++.++ -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788999999999999999999988652 222 257888899999999999999999999986543 25
Q ss_pred chhHHHHhhhhhccCCC
Q 010031 500 QAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 500 ~~~~~l~~~~~~~g~~~ 516 (520)
.++..+|.+|...|+.+
T Consensus 237 ~~~~~lg~~y~~~g~~~ 253 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEE 253 (293)
T ss_dssp HHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHcCCcH
Confidence 67889999999999865
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.65 E-value=5e-08 Score=87.15 Aligned_cols=192 Identities=11% Similarity=-0.012 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHH
Q 010031 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWG 371 (520)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~ 371 (520)
+...+..+...+...|++++|...++...+... .+...+..+..+|...|++++|...++...+ .+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456777888889999999999999999988753 4778888999999999999999999998776 356788899999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChH
Q 010031 372 LAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450 (520)
Q Consensus 372 ~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (520)
+...|++++|...|++..+. .|+.. .+...+....+. .++..... .. ....+.+..+...+...+ .|+++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~---~~~~~~~~-~~-~~~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRI---AKKKRWNS-IE-ERRIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHH---HHHHHHHH-HH-HTCCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHH---HHHHHHHH-HH-HHHHhhhHHHHHHHHHHH--HHHHH
Confidence 99999999999999998873 44321 122222222211 11222211 22 123355555555554433 68999
Q ss_pred HHHHHHhhCCC-CCCHH-HHHHHHHHHHHc-CCHHHHHHHHHHHhcCCC
Q 010031 451 KALNFINKMPE-TPDFV-IWGALFCACRTH-KDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 451 ~A~~~~~~~~~-~~~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p 496 (520)
+|++.+++... .|+.. ....+...+.+. +.+++|.++|+++.+..+
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999988765 45544 334444445444 678899999999987543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.4e-06 Score=76.30 Aligned_cols=203 Identities=11% Similarity=-0.001 Sum_probs=158.5
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhcCCC---CChhHHHHHHHHH----HHc---CC
Q 010031 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG--NIEAASLVFGETKE---KDLLTWTAMIWGL----AIH---GR 377 (520)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~ 377 (520)
...++|+..++.++..+. -+..+++.-..++...| ++++++++++.+.. .+..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 344688999999887763 35566777777888888 99999999998876 3556777665555 555 78
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHH--HHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC------h
Q 010031 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK--LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ------V 449 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 449 (520)
+++++.+++++.+.. +-+..+|..-...+...|.++ ++++.++++.+.. +-|...|+.-..++.+.|+ +
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhH
Confidence 999999999999853 226668888888888888888 9999999998643 4567788877777777776 8
Q ss_pred HHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHhcCC---CCCcchhHHHHhhhhhccCCC
Q 010031 450 DKALNFINKMPE--TPDFVIWGALFCACRTHKDT-KIAKIALQSSCSLN---LSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 450 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+++++.++++.. +-|...|+.+...+.+.|+. +......+++++++ |.++.++..++.++.+.|+.+
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 899999988664 45678899999888888874 44667888888776 889999999999999887643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=2e-07 Score=72.98 Aligned_cols=114 Identities=11% Similarity=-0.111 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHH
Q 010031 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFC 473 (520)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 473 (520)
+...+..+...+...|++++|...+++..... +.+...+..+..+|...|++++|+..+++... +.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 45577777778888888888888888877532 34466778888888888888888888887654 345678888888
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCC-----CcchhHHHHhhhhh
Q 010031 474 ACRTHKDTKIAKIALQSSCSLNLS-----IPQAMSYCQTFMQQ 511 (520)
Q Consensus 474 ~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~ 511 (520)
++...|++++|...+++++++.|+ +......+..+..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988887 56666555555443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-07 Score=72.32 Aligned_cols=99 Identities=11% Similarity=-0.010 Sum_probs=73.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHH
Q 010031 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRT 477 (520)
Q Consensus 400 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~ 477 (520)
+..+...+.+.|++++|+..+++..+.. +.+...|..+..++.+.|++++|+..+++... .| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4445566778888888988888887532 34567788888888899999999999988665 34 56788888888999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcc
Q 010031 478 HKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 478 ~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
.|++++|+..++++++.+|+++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999998754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2.5e-07 Score=75.11 Aligned_cols=130 Identities=12% Similarity=-0.055 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHH
Q 010031 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440 (520)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 440 (520)
...+..+...+...|++++|...|++..+. .| +..++..+...+...|++++|...+++..... +.+...+..+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence 456788888999999999999999999884 44 56688888899999999999999999988532 44567888999
Q ss_pred HHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHhcCC
Q 010031 441 NLLSRVGQVDKALNFINKMPE--TPDFVIWGALFC--ACRTHKDTKIAKIALQSSCSLN 495 (520)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~ 495 (520)
.++.+.|++++|.+.++++.. +.+...+..+.. .+...|++++|...+++..++.
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 999999999999999998765 334555544443 4778899999999999887643
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-07 Score=83.81 Aligned_cols=189 Identities=8% Similarity=-0.060 Sum_probs=115.5
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (520)
..+..+...+...|++++|+..|++..... +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 456677778888888888888888887753 3366777777888888888888888888887654 34566777788888
Q ss_pred HhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 010031 342 AKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 418 (520)
...|++++|...|+...+ | +...+...+....+. ..+. -+..........+......+ ..+ ..|++++|.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHH
Confidence 888888888888877665 2 111111112111111 1111 11222223233343333333 222 2678888888
Q ss_pred HHHHcHhhcCCCCCh-hHHHHHHHHHhcc-CChHHHHHHHhhCCC
Q 010031 419 FFDSMRFDYFIEPSV-KHHTVVVNLLSRV-GQVDKALNFINKMPE 461 (520)
Q Consensus 419 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 461 (520)
.++...+ ..|+. .....+...+.+. +++++|.++|+++..
T Consensus 157 ~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 157 ECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8777663 24443 3334444445554 567788888887664
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.61 E-value=7.4e-07 Score=72.25 Aligned_cols=124 Identities=10% Similarity=0.022 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 010031 332 AIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTAC 407 (520)
Q Consensus 332 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~ 407 (520)
..+..+...+...|++++|...|+...+ .+...+..+..++...|++++|...+++..+. .| +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 3455566667777777777777776543 34566677777777777777777777777663 33 344666667777
Q ss_pred HccCcHHHHHHHHHHcHhhcCCCCChhHH--HHHHHHHhccCChHHHHHHHhhC
Q 010031 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHH--TVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
...|++++|...++++.... +.+...+ ...+..+.+.|++++|++.+++.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 77777777777777776432 2233333 23333356667777777776653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=2.8e-07 Score=77.48 Aligned_cols=153 Identities=11% Similarity=-0.034 Sum_probs=84.0
Q ss_pred HHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHH
Q 010031 341 YAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 417 (520)
....|.++++.+.++..... ....+..+...+...|++++|+..|++..+. .|+...+... ....-.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~~ 83 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDKK 83 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHHH
Confidence 33445566665555543321 3345666667777777777777777777763 2321100000 000000
Q ss_pred HHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 010031 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495 (520)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 495 (520)
.. .....+..+..+|.+.|++++|+..++++.. +.+...+..+..++...|++++|+..++++++++
T Consensus 84 ---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 84 ---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 00 0124555666666677777777777666543 3345666667777777777777777777777777
Q ss_pred CCCcchhHHHHhhhhhccC
Q 010031 496 LSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 496 p~~~~~~~~l~~~~~~~g~ 514 (520)
|+++.++..++.++...|+
T Consensus 153 p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 7777777777777766554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-06 Score=76.27 Aligned_cols=124 Identities=9% Similarity=-0.103 Sum_probs=86.2
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-----cccHHHHHHHHHhCCC
Q 010031 204 VLINGCSKIGYLRKAVELFGMMPK--KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG-----VVSWTAMINGFSQNGE 276 (520)
Q Consensus 204 ~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~~~ 276 (520)
.....+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... ...+..+..++...|+
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence 355667778888888888887765 443355555567778888888888887655432 2356677788888888
Q ss_pred hhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCChHHHHHHHHHHHHcCC
Q 010031 277 AEKALAMFFQMLDAGVRAN--DFTVVSALSACAKVGALEAGVRVHNYISCNDF 327 (520)
Q Consensus 277 ~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 327 (520)
+++|+..|++.......|. .........++.+.|+.++|..+|+++.....
T Consensus 187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 8888888888774332243 23455566677788888888888888877653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.4e-07 Score=71.62 Aligned_cols=113 Identities=13% Similarity=0.061 Sum_probs=78.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--C---CC----HHHHH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--T---PD----FVIWG 469 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~----~~~~~ 469 (520)
.+..+...+...|++++|...+++..... +.+...+..+..+|...|++++|...++++.. + ++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45555566666677777777776665421 33455666667777777777777777766543 1 11 56677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 470 ALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
.+..++...|++++|...++++++..| ++.....++.+....+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 788888899999999999999999888 57888888877766554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-06 Score=72.98 Aligned_cols=98 Identities=9% Similarity=-0.020 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYS----GTEP--DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS---- 432 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---- 432 (520)
.++..+...+...|++++|...+++..+. +-.| ....+..+...+...|++++|...+++......-..+
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 45667777888888888888888876652 1122 1236777778888899999999988887642211122
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 433 VKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
..++..+..++...|++++|.+.+++..
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 2345778888999999999998887743
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.4e-08 Score=78.59 Aligned_cols=85 Identities=9% Similarity=0.034 Sum_probs=76.9
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhh
Q 010031 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFM 509 (520)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 509 (520)
+...+..+...+.+.|++++|+..|+++.. +.+...|..+..++...|++++|+..++++++++|+++.++..+|.++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 355777889999999999999999998764 457888999999999999999999999999999999999999999999
Q ss_pred hhccCCC
Q 010031 510 QQKGDGR 516 (520)
Q Consensus 510 ~~~g~~~ 516 (520)
...|+.+
T Consensus 100 ~~~g~~~ 106 (148)
T 2vgx_A 100 LQXGELA 106 (148)
T ss_dssp HHTTCHH
T ss_pred HHcCCHH
Confidence 9999854
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.7e-06 Score=84.90 Aligned_cols=167 Identities=8% Similarity=-0.024 Sum_probs=134.1
Q ss_pred CHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC
Q 010031 346 NIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGR----------YEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSG 411 (520)
Q Consensus 346 ~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 411 (520)
..++|.+.++.+.. | +..+|+.-..++...|+ +++++..++++.+. .| +..+|..-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34566666666654 2 44567766666666666 89999999999984 45 5558988888888899
Q ss_pred --cHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccC-ChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHc--------
Q 010031 412 --QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG-QVDKALNFINKMPE--TPDFVIWGALFCACRTH-------- 478 (520)
Q Consensus 412 --~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~-------- 478 (520)
+++++++.++++.+.. +-+...|+.-..++.+.| .++++++.++++.. +-+...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 7799999999998642 556788888888888889 89999999999876 34677898888877663
Q ss_pred ------CCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 479 ------KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 479 ------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+.++++++.+++++..+|++.++|.+++.++.+.|...
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 56899999999999999999999999999999887743
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-05 Score=71.94 Aligned_cols=230 Identities=10% Similarity=-0.011 Sum_probs=152.7
Q ss_pred HhCCChh-HHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCC----------hHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 010031 272 SQNGEAE-KALAMFFQMLDAGVRANDF-TVVSALSACAKVGA----------LEAGVRVHNYISCNDFGLKGAIGTALVD 339 (520)
Q Consensus 272 ~~~~~~~-~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (520)
.+.|.++ +|+.++..++.. .|+.. .++.--..+...+. ++++..+++.+....+ -+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 3455544 677777777764 34333 33322222222221 5677778888776653 46667766666
Q ss_pred HHHhcC--CHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---
Q 010031 340 MYAKCG--NIEAASLVFGETKE---KDLLTWTAMIWGLAIHGR-YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS--- 410 (520)
Q Consensus 340 ~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--- 410 (520)
++...+ .++++.++++.+.+ .|..+|+.-.-.+...|. ++++++.+.++++..+. |...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 666666 47888888887775 466788877777778887 58999999999885432 555776665555444
Q ss_pred -----------CcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc-----------CChHHHHHHHhhCCC-CCCHHH
Q 010031 411 -----------GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV-----------GQVDKALNFINKMPE-TPDFVI 467 (520)
Q Consensus 411 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~-~~~~~~ 467 (520)
+.++++++.+....... |-|...|+.+-..+.+. +.++++++.++++.+ .||. .
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 56888999998887532 44566676565555554 457888888888765 5654 3
Q ss_pred HHHHHHH-----HHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhh
Q 010031 468 WGALFCA-----CRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 468 ~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
|..+..+ ....|..++....+.++.+++|-....|..+..-
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 4433222 2246788899999999999999988888776543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-07 Score=71.26 Aligned_cols=104 Identities=13% Similarity=0.017 Sum_probs=62.5
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-C----CC----HHHHH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-T----PD----FVIWG 469 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~----~~----~~~~~ 469 (520)
.+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++... . ++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 44455555666666666666666655321 22344556666666666666666666665442 1 11 13556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 470 ALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
.+..++...|++++|++.|+++++..|+ |.....+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence 6777788888888888888888887774 4444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=4.8e-07 Score=82.99 Aligned_cols=146 Identities=14% Similarity=0.035 Sum_probs=106.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----------------hhHHHHHHHH
Q 010031 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KD----------------LLTWTAMIWG 371 (520)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----------------~~~~~~l~~~ 371 (520)
+++++|...++...+.. +.+...+..+...|.+.|++++|...|++..+ |+ ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444544444332221 12456677788888899999999998887664 32 4678888889
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChH
Q 010031 372 LAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD 450 (520)
Q Consensus 372 ~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (520)
+.+.|++++|+..++++++. .| +...+..+..++...|++++|+..|+++.+.. +.+...+..+..++.+.|+.+
T Consensus 206 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998884 45 45588888888999999999999999887532 334567888888888888888
Q ss_pred HH-HHHHhhCC
Q 010031 451 KA-LNFINKMP 460 (520)
Q Consensus 451 ~A-~~~~~~~~ 460 (520)
+| .+.+++|.
T Consensus 282 ~a~~~~~~~~~ 292 (336)
T 1p5q_A 282 AREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88 44555543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.2e-07 Score=75.28 Aligned_cols=81 Identities=6% Similarity=-0.085 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc-chhHHHHhhh
Q 010031 433 VKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP-QAMSYCQTFM 509 (520)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~ 509 (520)
...|..+..+|.+.|++++|+..++++.. +.+...|..+..++...|++++|...++++++++|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45788889999999999999999988765 44577899999999999999999999999999999998 6666666665
Q ss_pred hhcc
Q 010031 510 QQKG 513 (520)
Q Consensus 510 ~~~g 513 (520)
...+
T Consensus 143 ~~~~ 146 (162)
T 3rkv_A 143 ERRA 146 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.7e-07 Score=68.70 Aligned_cols=104 Identities=12% Similarity=0.017 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (520)
.+...+..+.+.|++++|+..|++.++. .| +...|..+..++...|++++|+..+++..+.. +.+...|..+..+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHH
Confidence 4555667777777777777777777763 44 34467777777777777777777777776421 3345567777777
Q ss_pred HhccCChHHHHHHHhhCCC-CC-CHHHHHHH
Q 010031 443 LSRVGQVDKALNFINKMPE-TP-DFVIWGAL 471 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l 471 (520)
|...|++++|++.|++... .| +...+..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 7777777777777777554 33 33444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.1e-07 Score=69.67 Aligned_cols=99 Identities=13% Similarity=0.037 Sum_probs=70.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CC--CHHHHHHHHHH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TP--DFVIWGALFCA 474 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~~l~~~ 474 (520)
.+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|++.+++... +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 45556666777777777777777776432 33456677777777778888888877777543 23 46677777778
Q ss_pred HHHc-CCHHHHHHHHHHHhcCCCCCc
Q 010031 475 CRTH-KDTKIAKIALQSSCSLNLSIP 499 (520)
Q Consensus 475 ~~~~-g~~~~A~~~~~~~~~~~p~~~ 499 (520)
+... |++++|.+.++++++..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888888765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.5e-07 Score=68.42 Aligned_cols=109 Identities=12% Similarity=-0.058 Sum_probs=80.6
Q ss_pred HHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh---hHHHHHHHHHhccCChHHHHHHHhhCCC-CCC----HHHHHHHHH
Q 010031 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSV---KHHTVVVNLLSRVGQVDKALNFINKMPE-TPD----FVIWGALFC 473 (520)
Q Consensus 402 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~ 473 (520)
.+...+...|++++|...++.+.+.. +.+. ..+..+..+|.+.|++++|+..++++.. .|+ +..+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34456667788888888888877532 2222 3667778888888888888888887654 233 556777888
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 474 ACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 474 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
++...|++++|...++++++..|+++.+......+-.-.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 899999999999999999999999888777666555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.8e-06 Score=64.72 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|..+++++.... +.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHH
Confidence 3456666667777777777777777776642 2244566667777777777777777777776422 344556667777
Q ss_pred HHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHH
Q 010031 442 LLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRT 477 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 477 (520)
+|.+.|++++|...++++.. +.+...+..+..++..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 77777777777777776543 2334455555544443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.3e-08 Score=72.86 Aligned_cols=106 Identities=8% Similarity=-0.056 Sum_probs=78.2
Q ss_pred ccCcHHHHHHHHHHcHhhcC-CCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHH
Q 010031 409 YSGQVKLALNFFDSMRFDYF-IEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAK 485 (520)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 485 (520)
..|++++|+..|++..+... -+.+...+..+..+|.+.|++++|++.++++.. +.+...+..+..++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35778888888888874210 122346778888889999999999999988765 345778888889999999999999
Q ss_pred HHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 486 IALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 486 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
..++++++..|+++....+...+....++
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~ 110 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYADK 110 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHTTC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999998887766666555444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.48 E-value=7.9e-07 Score=85.34 Aligned_cols=144 Identities=12% Similarity=-0.019 Sum_probs=89.1
Q ss_pred CHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHH
Q 010031 346 NIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD----------------GTVFLAILTA 406 (520)
Q Consensus 346 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----------------~~~~~~l~~~ 406 (520)
++++|...|+.... .....|..+...+.+.|++++|+..|++.++. .|+ ...|..+..+
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443332 13456778888888999999999999988873 343 3566666677
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHH
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIA 484 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A 484 (520)
+.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|+..|+++.. .| +...+..+..++.+.|+.++|
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766421 33455666677777777777777777776544 23 344566666666666666655
Q ss_pred H-HHHHHHhc
Q 010031 485 K-IALQSSCS 493 (520)
Q Consensus 485 ~-~~~~~~~~ 493 (520)
. ..+++++.
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 4 34444443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.5e-06 Score=76.90 Aligned_cols=167 Identities=12% Similarity=0.061 Sum_probs=127.5
Q ss_pred CCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc-C-cHHHHH
Q 010031 345 GNIEAASLVFGETKE---KDLLTWTAMIWGLAIHG-RYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYS-G-QVKLAL 417 (520)
Q Consensus 345 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-g-~~~~a~ 417 (520)
+..++|+++++.+.. .+..+|+.-...+...| .+++++.+++.+... .| +..+|+.-...+... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 344566666666554 24456777777777777 589999999999884 44 445777776666665 6 788999
Q ss_pred HHHHHcHhhcCCCCChhHHHHHHHHHhccCChH--------HHHHHHhhCCC--CCCHHHHHHHHHHHHHcCC-------
Q 010031 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVD--------KALNFINKMPE--TPDFVIWGALFCACRTHKD------- 480 (520)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~------- 480 (520)
++++++.+. -+.+...|+.-..++.+.|.++ ++++.++++.. +-|...|+.....+.+.|.
T Consensus 146 ~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHH
Confidence 999988742 2456677777777777766666 88888888765 3467789888888888776
Q ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCC
Q 010031 481 TKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 481 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 515 (520)
++++++.++++++.+|+|.++|.++..++.+.|.+
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999988876
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-06 Score=66.20 Aligned_cols=115 Identities=14% Similarity=0.012 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHH
Q 010031 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440 (520)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 440 (520)
...+..+...+...|++++|...+++..+. .| +...+..+...+...|++++|...+++..... +.+...+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHH
Confidence 345666667777777777777777777763 33 45567777777777777888877777776432 33456677777
Q ss_pred HHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCC
Q 010031 441 NLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKD 480 (520)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 480 (520)
.++.+.|++++|.+.+++... +.+...+..+..++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 777777888888777777544 2345666666666666655
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-06 Score=66.85 Aligned_cols=115 Identities=14% Similarity=0.015 Sum_probs=80.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 439 (520)
+...+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHH
Confidence 3456777777788888888888888887763 34 45577777777888888888888888877532 3456677778
Q ss_pred HHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcC
Q 010031 440 VNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHK 479 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g 479 (520)
..+|.+.|++++|++.+++... .| +...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 8888888888888888877654 33 3445666666665554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=4.1e-07 Score=76.49 Aligned_cols=147 Identities=11% Similarity=-0.011 Sum_probs=80.5
Q ss_pred HHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCh----------------
Q 010031 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDL---------------- 362 (520)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~---------------- 362 (520)
........|+++.+.+.+..-.... ......+..+...+...|++++|...|++..+ .+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3444455667777776665332211 12345567788889999999999999987654 222
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
..|..+..++...|++++|+..+++..+. .| +...+..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHH
Confidence 45566666666666666666666666663 33 33456666666666666666666666665321 223445555555
Q ss_pred HHhccCChHHHH
Q 010031 442 LLSRVGQVDKAL 453 (520)
Q Consensus 442 ~~~~~g~~~~A~ 453 (520)
++...++.+++.
T Consensus 165 ~~~~~~~~~~~~ 176 (198)
T 2fbn_A 165 CVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHH
Confidence 555555544444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.8e-07 Score=83.03 Aligned_cols=132 Identities=15% Similarity=0.008 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHHccCcHHHHHHHHHHcHhh
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT------------------VFLAILTACWYSGQVKLALNFFDSMRFD 426 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 426 (520)
+..+...+.+.|++++|...|++... +.|+.. .|..+..++.+.|++++|+..+++..+.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44455555566666666666666655 234432 6667777777888888888888877642
Q ss_pred cCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC-HHHHHHHHHH-HHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD-FVIWGALFCA-CRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
. +.+...|..+..+|...|++++|+..|+++.. .|+ ...+..+... ....+..+++...|+++++..|+++.
T Consensus 260 ~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 260 E--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp C--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 2 33566777788888888888888888887765 343 3445555544 33456667777888888888777654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.45 E-value=5.9e-07 Score=70.52 Aligned_cols=76 Identities=14% Similarity=0.074 Sum_probs=59.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhCCC--------CCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcch
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKMPE--------TPD-FVIW----GALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
.|..+..++.+.|++++|+..+++... .|+ ...| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 677777777777777777777666431 455 4578 889999999999999999999999999999988
Q ss_pred hHHHHhhhh
Q 010031 502 MSYCQTFMQ 510 (520)
Q Consensus 502 ~~~l~~~~~ 510 (520)
..-+..+-.
T Consensus 139 ~~~~~~~~~ 147 (159)
T 2hr2_A 139 TPGKERMME 147 (159)
T ss_dssp CTTHHHHHH
T ss_pred HHHHHHHHH
Confidence 766655443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.42 E-value=2e-06 Score=66.09 Aligned_cols=105 Identities=10% Similarity=0.035 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcC-CCCC----hhHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYF-IEPS----VKHHT 437 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~ 437 (520)
.+..++..+.+.|++++|+..|++.++ +.|+ ...|..+..+|...|++++|++.+++..+... ..++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 466677788888888888888888887 4554 44777788888888888888888888764211 1111 23566
Q ss_pred HHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHH
Q 010031 438 VVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGA 470 (520)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ 470 (520)
.+..++...|++++|++.|++... .|++.+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHH
Confidence 777888888888888888887554 566654443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.42 E-value=9.1e-07 Score=71.25 Aligned_cols=134 Identities=11% Similarity=0.056 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hh
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PDG----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VK 434 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 434 (520)
++..+...+...|++++|...+++..+.... ++. .++..+...+...|++++|.+.+++......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 5666777777788888888888776652111 111 36677777888888888888888887642211111 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhCCC----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKMPE----TPD----FVIWGALFCACRTHKDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 497 (520)
.+..+..++...|++++|.+.+++... ..+ ...+..+...+...|++++|...+++++++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 667788888889999999888887543 112 345677778889999999999999999876543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=5.9e-07 Score=70.83 Aligned_cols=84 Identities=12% Similarity=-0.013 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 433 VKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
...+..+...+.+.|++++|+..|+++.. +.+...|..+..++...|++++|+..++++++++|+++..+..+|.++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 45667788899999999999999998764 4467889999999999999999999999999999999999999999999
Q ss_pred hccCCC
Q 010031 511 QKGDGR 516 (520)
Q Consensus 511 ~~g~~~ 516 (520)
..|+.+
T Consensus 98 ~~g~~~ 103 (142)
T 2xcb_A 98 QLGDLD 103 (142)
T ss_dssp HTTCHH
T ss_pred HcCCHH
Confidence 999854
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.2e-07 Score=76.57 Aligned_cols=108 Identities=6% Similarity=-0.027 Sum_probs=89.8
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHH-HHHcCCH--
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCA-CRTHKDT-- 481 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~-~~~~g~~-- 481 (520)
+...|++++|...+++..... +.+...+..+..+|...|++++|+..++++.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 345788999999999987542 45667899999999999999999999999765 4567788888888 7899998
Q ss_pred HHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 482 KIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 482 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
++|...++++++.+|+++.++..++.++...|+.+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 132 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHH
Confidence 99999999999999999999999999999998854
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.40 E-value=9.3e-07 Score=82.05 Aligned_cols=132 Identities=8% Similarity=-0.097 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (520)
..+..+...+.+.|++++|+..|++.++. .|... ..... +..... -+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~~~--~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGAKL--QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHGGG--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHHHH--HHHHHHHHHHHHHH
Confidence 34666777777778888888777777651 11110 00011 111100 02235678889999
Q ss_pred HhccCChHHHHHHHhhCCC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCC
Q 010031 443 LSRVGQVDKALNFINKMPE-T-PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 515 (520)
|.+.|++++|++.++++.. . .+...|..+..++...|++++|+..++++++++|+++.++..++.++...++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765 3 45778889999999999999999999999999999999999999998877653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-06 Score=65.55 Aligned_cols=85 Identities=11% Similarity=-0.017 Sum_probs=72.5
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC------cchhH
Q 010031 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI------PQAMS 503 (520)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 503 (520)
+...+..+...+.+.|++++|++.+++... +.+...|..+..++...|++++|+..++++++++|++ +.++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 455677788888899999999999988654 3467788889999999999999999999999999998 88888
Q ss_pred HHHhhhhhccCCC
Q 010031 504 YCQTFMQQKGDGR 516 (520)
Q Consensus 504 ~l~~~~~~~g~~~ 516 (520)
.++.++...|+.+
T Consensus 83 ~~~~~~~~~~~~~ 95 (111)
T 2l6j_A 83 RLELAQGAVGSVQ 95 (111)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhHh
Confidence 9999999888754
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.38 E-value=6e-07 Score=69.06 Aligned_cols=84 Identities=8% Similarity=-0.117 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 433 VKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
...+..+...+.+.|++++|+..|++... +.+...|..+..++...|++++|+..++++++++|+++.++..+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45677888999999999999999998765 4567899999999999999999999999999999999999999999999
Q ss_pred hccCCC
Q 010031 511 QKGDGR 516 (520)
Q Consensus 511 ~~g~~~ 516 (520)
..|+.+
T Consensus 84 ~~~~~~ 89 (126)
T 3upv_A 84 AVKEYA 89 (126)
T ss_dssp HTTCHH
T ss_pred HHhCHH
Confidence 999854
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.37 E-value=9.2e-07 Score=63.30 Aligned_cols=81 Identities=20% Similarity=0.150 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 433 VKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
...+..+...+.+.|++++|+..+++... +.+...+..+..++...|++++|...++++++++|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45677788888899999999999988654 3457788889999999999999999999999999999999999999988
Q ss_pred hcc
Q 010031 511 QKG 513 (520)
Q Consensus 511 ~~g 513 (520)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-05 Score=76.94 Aligned_cols=159 Identities=12% Similarity=0.001 Sum_probs=88.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-----CCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH-HHH
Q 010031 335 TALVDMYAKCGNIEAASLVFGETKE-----KDL----LTWTAMIWGLAIHGRYEQAIQYFKKMMY----SGTEPDG-TVF 400 (520)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~~-~~~ 400 (520)
..++..|...|++++|.+.+..+.+ ++. .+.+.+...+...|+++.|..++++... .+..+.. .++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 3455556666666666655555433 111 1222233333345667777766666543 2333333 366
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHhhCCC----CCC-----HHH
Q 010031 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALNFINKMPE----TPD-----FVI 467 (520)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~ 467 (520)
..+...+...|++++|..+++.+.....-..+ ..++..++..|...|++++|..++++... .++ ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 66777777777777777777766532211111 34566677777777777777777765432 111 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 468 WGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 468 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
+..+...+...|++++|...+.++++
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44455556667777777777777765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=8.5e-07 Score=67.56 Aligned_cols=82 Identities=10% Similarity=0.010 Sum_probs=73.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
.+..+...+.+.|++++|+..++++.. +.+...|..+..++...|++++|+..++++++++|+++.++..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 455678889999999999999999765 346788999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 010031 513 GDGR 516 (520)
Q Consensus 513 g~~~ 516 (520)
|+.+
T Consensus 99 g~~~ 102 (121)
T 1hxi_A 99 HNAN 102 (121)
T ss_dssp HHHH
T ss_pred CCHH
Confidence 8744
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-06 Score=84.12 Aligned_cols=98 Identities=9% Similarity=-0.115 Sum_probs=45.3
Q ss_pred ccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 010031 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKI 486 (520)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 486 (520)
..|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|++.++++.. +.+...|..+..++...|++++|+.
T Consensus 18 ~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444444444444311 12234444444444455555555544444332 1233444444445555555555555
Q ss_pred HHHHHhcCCCCCcchhHHHHhh
Q 010031 487 ALQSSCSLNLSIPQAMSYCQTF 508 (520)
Q Consensus 487 ~~~~~~~~~p~~~~~~~~l~~~ 508 (520)
.++++++++|+++.++..++.+
T Consensus 96 ~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 96 DYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHH
Confidence 5555555555555555544444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.9e-05 Score=59.30 Aligned_cols=106 Identities=10% Similarity=-0.056 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
..+..++..+...|++++|...|++.... .| +...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 45666777778888888888888888774 34 45577777778888888888888888877532 334667777888
Q ss_pred HHhccCChHHHHHHHhhCCC-CC-CHHHHHHHH
Q 010031 442 LLSRVGQVDKALNFINKMPE-TP-DFVIWGALF 472 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~ 472 (520)
++...|++++|.+.+++... .| +...+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 88888888888888887654 33 344444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.3e-06 Score=66.77 Aligned_cols=87 Identities=10% Similarity=-0.065 Sum_probs=78.4
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHh
Q 010031 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQT 507 (520)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 507 (520)
+.+...+..+...+...|++++|+..+++... +.+...|..+..++...|++++|...++++++++|+++.++..+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 44677888999999999999999999998764 4457889999999999999999999999999999999999999999
Q ss_pred hhhhccCCC
Q 010031 508 FMQQKGDGR 516 (520)
Q Consensus 508 ~~~~~g~~~ 516 (520)
++...|+.+
T Consensus 86 ~~~~~~~~~ 94 (137)
T 3q49_B 86 CQLEMESYD 94 (137)
T ss_dssp HHHHTTCHH
T ss_pred HHHHHhhHH
Confidence 999998854
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.1e-05 Score=74.99 Aligned_cols=96 Identities=8% Similarity=0.003 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--CCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcC-C--CCC--h
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYS--GT--EPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYF-I--EPS--V 433 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~--~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~--~~~--~ 433 (520)
++..++..+...|++++|..+++++... +. .|.. .++..++..|...|++++|..++++...... + ++. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 4555666666666666666666665432 11 1211 2566666667777777777777666543111 1 111 2
Q ss_pred hHHHHHHHHHhccCChHHHHHHHhhC
Q 010031 434 KHHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
..+..++..+...|++++|...+.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555566666677777766655443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.25 E-value=7.1e-06 Score=66.34 Aligned_cols=93 Identities=13% Similarity=-0.029 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (520)
.+..+...+...|++++|+..|++..+. .| +...|..+..++...|++++|+..+++..+.. +.+...|..+..+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 4444455555555555555555555552 23 33355555555555555555555555554321 2234455555555
Q ss_pred HhccCChHHHHHHHhhCC
Q 010031 443 LSRVGQVDKALNFINKMP 460 (520)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~ 460 (520)
|.+.|++++|++.|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 555555555555555543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=7.3e-05 Score=67.11 Aligned_cols=195 Identities=11% Similarity=0.022 Sum_probs=138.6
Q ss_pred ccCCh-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC----------HHHHHHHHhcCCC---CChhHHHHHHHHHH
Q 010031 308 KVGAL-EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN----------IEAASLVFGETKE---KDLLTWTAMIWGLA 373 (520)
Q Consensus 308 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 373 (520)
+.|.+ ++|......+...++ -+..+|+.--.++...+. ++++..+++.+.. .+..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44444 478899998887653 233445433333333222 5778888887765 46778888888888
Q ss_pred HcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc-HHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc----
Q 010031 374 IHG--RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ-VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV---- 446 (520)
Q Consensus 374 ~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 446 (520)
..+ ++++++.++.++.+... -|...|+.-...+...|. ++++++.++++.+.. +-|...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhcc
Confidence 888 48999999999998532 266688887777778887 689999999998643 45666777666666554
Q ss_pred ----------CChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 447 ----------GQVDKALNFINKMPE--TPDFVIWGALFCACRTH-----------KDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 447 ----------g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
+.++++++.+.+... +.|...|+.+-..+.+. +.++++++.++++++++|++.-++.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 457888998888664 45677888776666555 4689999999999999999854444
Q ss_pred HHH
Q 010031 504 YCQ 506 (520)
Q Consensus 504 ~l~ 506 (520)
.++
T Consensus 277 ~~~ 279 (331)
T 3dss_A 277 TII 279 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.24 E-value=6.1e-07 Score=86.48 Aligned_cols=126 Identities=13% Similarity=-0.005 Sum_probs=76.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCCh
Q 010031 371 GLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV 449 (520)
Q Consensus 371 ~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 449 (520)
.+...|++++|+..|++..+. .|+ ..++..+..++.+.|++++|++.+++..+.. +.+...+..+..+|.+.|++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence 344567777777777777663 443 4466777777777777777777777776421 23455666777777777777
Q ss_pred HHHHHHHhhCCC-CC-CHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHhcCCCCCcc
Q 010031 450 DKALNFINKMPE-TP-DFVIWGALFCA--CRTHKDTKIAKIALQ-----------SSCSLNLSIPQ 500 (520)
Q Consensus 450 ~~A~~~~~~~~~-~~-~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~~~~~~p~~~~ 500 (520)
++|++.++++.. .| +...+..+..+ +.+.|++++|++.++ ++++++|+...
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 777777776543 22 23344444444 666777777777777 66666665443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.9e-06 Score=79.04 Aligned_cols=110 Identities=8% Similarity=-0.090 Sum_probs=79.4
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChh------------------HHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK------------------HHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
.+..+...+.+.|++++|...|++.... .|+.. .|..+..+|.+.|++++|+..++++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4666777888999999999999998752 35433 78899999999999999999999876
Q ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 461 E--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 461 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
. +.+...|..+..++...|++++|+..|+++++++|+++.++..++.+...
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 5 34678999999999999999999999999999999999999999888544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-05 Score=63.05 Aligned_cols=97 Identities=11% Similarity=0.005 Sum_probs=65.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHH
Q 010031 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436 (520)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 436 (520)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+..++...|++++|...+++..+.. +.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHH
Confidence 445666667777777777777777777776 3555 3466666677777777777777777766421 3345566
Q ss_pred HHHHHHHhccCChHHHHHHHhhCCC
Q 010031 437 TVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
..+..+|...|++++|...+++...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6777777777777777777776543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.5e-06 Score=63.61 Aligned_cols=86 Identities=8% Similarity=-0.043 Sum_probs=76.8
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC--CcchhHHHHh
Q 010031 432 SVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLS--IPQAMSYCQT 507 (520)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 507 (520)
+...+..+...+.+.|++++|+..++++.. +.+...|..+..++...|++++|...++++++..|+ ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 456778899999999999999999998764 456778999999999999999999999999999999 9999999999
Q ss_pred hhhhc-cCCCc
Q 010031 508 FMQQK-GDGRT 517 (520)
Q Consensus 508 ~~~~~-g~~~~ 517 (520)
++... |+.+.
T Consensus 85 ~~~~~~~~~~~ 95 (112)
T 2kck_A 85 ALRYIEGKEVE 95 (112)
T ss_dssp HHTTCSSCSHH
T ss_pred HHHHHhCCHHH
Confidence 99999 88653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.22 E-value=7.8e-06 Score=62.85 Aligned_cols=111 Identities=11% Similarity=-0.019 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCC-CCC----hhHHH
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI-EPS----VKHHT 437 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~ 437 (520)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.....- .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666777777778888888887777642 224556777777777778888888877777643211 111 55667
Q ss_pred HHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHH
Q 010031 438 VVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCA 474 (520)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~ 474 (520)
.+..+|.+.|++++|.+.++++.. .|+...+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 777777888888888888877554 4555555544443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=2e-06 Score=67.38 Aligned_cols=96 Identities=8% Similarity=-0.071 Sum_probs=58.7
Q ss_pred cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCCh----------HHHHHHHhhCCC-CC-CHHHHHHHHHHHHH
Q 010031 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQV----------DKALNFINKMPE-TP-DFVIWGALFCACRT 477 (520)
Q Consensus 410 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~ 477 (520)
.+.+++|.+.++...+.. +.+...|..+..++.+.|++ ++|+..|++... .| +...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 344555555555554321 22344555555555554443 466666666543 33 35566666666665
Q ss_pred c-----------CCHHHHHHHHHHHhcCCCCCcchhHHHHh
Q 010031 478 H-----------KDTKIAKIALQSSCSLNLSIPQAMSYCQT 507 (520)
Q Consensus 478 ~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 507 (520)
. |++++|+..|+++++++|+++.....+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4 58999999999999999998877665543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-05 Score=77.19 Aligned_cols=127 Identities=13% Similarity=0.126 Sum_probs=97.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010031 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE--K-D---------------LLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391 (520)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 391 (520)
....+..+...|.+.|++++|...|++..+ | + ...|..+..++.+.|++++|+..++++++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345677788888999999999999987765 3 2 467888889999999999999999999884
Q ss_pred CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHhccCChHHHHH-HHhhCCC
Q 010031 392 GTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALN-FINKMPE 461 (520)
Q Consensus 392 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 461 (520)
.| +...|..+..+|...|++++|+..|+++.+ +.| +...+..+..++.+.|+.+++.+ .+++|..
T Consensus 347 --~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 347 --DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred --CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45 455888888899999999999999999875 234 45678888888888888887764 4555553
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.2e-05 Score=58.62 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC---hhHHHHH
Q 010031 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVV 439 (520)
Q Consensus 367 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 439 (520)
.+...+...|++++|...|+++.+. .|+. ..+..+..++...|++++|...++++.... +.+ ...+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l 82 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHH
Confidence 3455566677777777777777663 2322 255566666777777777777777766432 122 3456666
Q ss_pred HHHHhccCChHHHHHHHhhCCC
Q 010031 440 VNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
..+|.+.|++++|...++++..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777776543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.07 E-value=2e-05 Score=63.16 Aligned_cols=96 Identities=14% Similarity=0.129 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hh
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYS----GTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VK 434 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 434 (520)
++..+...+...|++++|...+++..+. +-.+. ...+..+...+...|++++|.+.+++......-..+ ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 5566666777777777777777766542 11111 235666667777788888888877776532110111 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhC
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
.+..+..+|...|++++|.+.+++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5667777888888888888877764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=4.6e-05 Score=59.31 Aligned_cols=121 Identities=16% Similarity=0.070 Sum_probs=96.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhc----cCChH
Q 010031 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR----VGQVD 450 (520)
Q Consensus 375 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 450 (520)
.+++++|...|++..+.| .|+.. +...|...+.+++|.++|++..+ . -++..+..|...|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHH
Confidence 357899999999999987 44443 66677777889999999999885 2 456777888888887 78999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCcchhHHHH
Q 010031 451 KALNFINKMPETPDFVIWGALFCACRT----HKDTKIAKIALQSSCSLNLSIPQAMSYCQ 506 (520)
Q Consensus 451 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 506 (520)
+|+++|++.....++..+..+...|.. .++.++|...++++.+.. ++.+...++
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 999999998766788888999999988 899999999999998873 344444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.01 E-value=9e-06 Score=63.81 Aligned_cols=52 Identities=12% Similarity=-0.056 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-------CCCCcchh----HHHHhhhhhccCCC
Q 010031 465 FVIWGALFCACRTHKDTKIAKIALQSSCSL-------NLSIPQAM----SYCQTFMQQKGDGR 516 (520)
Q Consensus 465 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~ 516 (520)
...|..+..++.+.|++++|+..+++++++ +|+++.+| ...|.++...|+.+
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~e 119 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGA 119 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHH
Confidence 348999999999999999999999999999 99999999 99999999998844
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.3e-05 Score=60.93 Aligned_cols=99 Identities=11% Similarity=0.072 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--------CC--------CCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhh
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYS--------GT--------EPDG-TVFLAILTACWYSGQVKLALNFFDSMRFD 426 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~--------~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 426 (520)
.+......+.+.|++++|+..|++.+.. .. .|.. ..|..+..++...|++++|+..++++...
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4555666677777777777777776652 00 2332 36777788888888888888888888753
Q ss_pred cCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCC
Q 010031 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPD 464 (520)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 464 (520)
. +.+...|..+..+|...|++++|+..|++... .|+
T Consensus 93 ~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 93 E--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp S--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred C--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 2 34566788888888888888888888887654 444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.2e-05 Score=58.94 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=61.8
Q ss_pred HHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 416 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
|++.+++..+.. +.+...+..+..+|.+.|++++|+..+++... +.+...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566655321 33456677777777777777777777777554 33456777777778888888888888888887
Q ss_pred CCCCC--cchhHHHHhhhhhcc
Q 010031 494 LNLSI--PQAMSYCQTFMQQKG 513 (520)
Q Consensus 494 ~~p~~--~~~~~~l~~~~~~~g 513 (520)
+.|++ ......+...+...|
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhc
Confidence 77643 334444555554444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00024 Score=64.06 Aligned_cols=144 Identities=11% Similarity=0.002 Sum_probs=95.9
Q ss_pred ChhHHHHHHHHH--HHcC---CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHc---cC-----cHHHHHHHHHHcHhh
Q 010031 361 DLLTWTAMIWGL--AIHG---RYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWY---SG-----QVKLALNFFDSMRFD 426 (520)
Q Consensus 361 ~~~~~~~l~~~~--~~~~---~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~---~g-----~~~~a~~~~~~~~~~ 426 (520)
+...|...+++. ...+ +..+|..+|++.++ ..|+.. .+..+..++.. .+ ........++.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 455555555443 2333 35788999999988 577754 44444444321 11 111111122221111
Q ss_pred cCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
...+.++.+|..+...+...|++++|+..++++.. .|+...|..+...+.-.|++++|.+.+++++.++|..+ .+.+.
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~ 349 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWI 349 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHH
Confidence 22256677888888888888999999999999776 68888888888889999999999999999999999876 44444
Q ss_pred Hh
Q 010031 506 QT 507 (520)
Q Consensus 506 ~~ 507 (520)
..
T Consensus 350 ~~ 351 (372)
T 3ly7_A 350 EN 351 (372)
T ss_dssp HH
T ss_pred hC
Confidence 33
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00013 Score=71.59 Aligned_cols=136 Identities=17% Similarity=0.122 Sum_probs=113.8
Q ss_pred HcCC-HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCc----------HHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 374 IHGR-YEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQ----------VKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 374 ~~~~-~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
+.|. .++|++.++++.. +.|+.. +|+.--.++...|+ ++++++.++.+.+.. +-+..+|..-..
T Consensus 40 ~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w 115 (567)
T 1dce_A 40 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCW 115 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3444 5788999999998 567654 67766666666666 999999999998643 556778888888
Q ss_pred HHhccC--ChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 442 LLSRVG--QVDKALNFINKMPE--TPDFVIWGALFCACRTHK-DTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 442 ~~~~~g--~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
++.+.| +++++++.++++.+ +.+...|+.-..++.+.| .++++++.++++++.+|+|.++|.+.+.++...+
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhc
Confidence 999999 67999999999876 457889999999999999 9999999999999999999999999999998853
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.89 E-value=7.9e-05 Score=69.03 Aligned_cols=91 Identities=10% Similarity=-0.026 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC-------------------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010031 332 AIGTALVDMYAKCGNIEAASLVFGETKE-------------------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392 (520)
Q Consensus 332 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 392 (520)
..+..+...+.+.|++++|.+.|++..+ .+...|..+..++.+.|++++|+..+++.++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-- 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--
Confidence 4567788899999999999999876554 0123344444444444444444444444444
Q ss_pred CCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 393 TEPD-GTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 393 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
+.|+ ...+..+..++...|++++|++.++++.
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al 334 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 334 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2222 2244444444444444444444444444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.82 E-value=2.9e-05 Score=56.56 Aligned_cols=84 Identities=10% Similarity=-0.049 Sum_probs=56.7
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC--cchhHHHH
Q 010031 431 PSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSI--PQAMSYCQ 506 (520)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~ 506 (520)
-+...+..+..+|.+.|++++|++.|+++.. +.+...|..+..++...|++++|+..+++++++.|++ ......+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 3455677777777788888888888777654 2345677777777888888888888888888776643 34444555
Q ss_pred hhhhhccC
Q 010031 507 TFMQQKGD 514 (520)
Q Consensus 507 ~~~~~~g~ 514 (520)
.++...++
T Consensus 85 ~~l~~~~~ 92 (100)
T 3ma5_A 85 DAKLKAEG 92 (100)
T ss_dssp HHHHHHHT
T ss_pred HHHHHccc
Confidence 55554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.80 E-value=3.7e-05 Score=57.89 Aligned_cols=60 Identities=8% Similarity=0.098 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
.+..+..++...|++++|+..|++..+. .|+ ...+..+..++...|++++|...+++...
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444455555555555555555442 222 23444444455555555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.4e-05 Score=59.49 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-------hh
Q 010031 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-------VK 434 (520)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~ 434 (520)
..+..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|++.+++..+ +.|+ ..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHHH
Confidence 34555555666666666666666666553 33 334555555566666666666666666553 2333 23
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhC
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
.+..+..++...|++++|++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 3444444555555555444444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.71 E-value=8.5e-05 Score=53.79 Aligned_cols=64 Identities=20% Similarity=0.152 Sum_probs=41.6
Q ss_pred HHHHHhccCChHHHHHHHhhCCC-C-CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchh
Q 010031 439 VVNLLSRVGQVDKALNFINKMPE-T-PDFV-IWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 502 (520)
.+..+.+.|++++|++.++++.. . .+.. .|..+..++...|++++|+..++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455666777777777666543 2 3445 666666667777777777777777777777777666
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0001 Score=70.58 Aligned_cols=123 Identities=8% Similarity=-0.047 Sum_probs=81.8
Q ss_pred HHHcCCHHHHHHHHHHHHHC---CCC---CCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhh----cC-CCCC-hhHHHH
Q 010031 372 LAIHGRYEQAIQYFKKMMYS---GTE---PDG-TVFLAILTACWYSGQVKLALNFFDSMRFD----YF-IEPS-VKHHTV 438 (520)
Q Consensus 372 ~~~~~~~~~a~~~~~~~~~~---~~~---p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~-~~~~~~ 438 (520)
+...|++++|+.++++..+. -+. |+. .+++.|...|...|++++|..++++..+- .| -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777776542 122 222 27777888888888888888877776431 11 1222 356788
Q ss_pred HHHHHhccCChHHHHHHHhhCCC---------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 439 VVNLLSRVGQVDKALNFINKMPE---------TPDF-VIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~---------~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
|..+|...|++++|+.+++++.. .|+. .+...+..++...|.+++|+..+.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877543 1332 23445556677888888899888888763
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00021 Score=55.31 Aligned_cols=100 Identities=11% Similarity=-0.089 Sum_probs=75.6
Q ss_pred CcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccC---ChHHHHHHHhhCCC-C-C--CHHHHHHHHHHHHHcCCHHH
Q 010031 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG---QVDKALNFINKMPE-T-P--DFVIWGALFCACRTHKDTKI 483 (520)
Q Consensus 411 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~-~--~~~~~~~l~~~~~~~g~~~~ 483 (520)
+....+.+.|.+..+ .+ +++..+...+..++++.+ +.++++.++++... . | ....+..+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 345566666666653 22 467777788888898888 66688888887654 3 4 24566777788999999999
Q ss_pred HHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 484 AKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 484 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
|.+.++++++.+|++..+......+-...
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988766555443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0013 Score=51.01 Aligned_cols=107 Identities=11% Similarity=0.038 Sum_probs=53.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHH
Q 010031 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK----CGNIEAAS 351 (520)
Q Consensus 276 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 351 (520)
++++|+++|++..+.| .|+.. +...|...+.+++|...|++..+.| ++..+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566777777766665 33332 4455555566666666666666553 34444445444444 34444444
Q ss_pred HHHhcCCC-CChhHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 010031 352 LVFGETKE-KDLLTWTAMIWGLAI----HGRYEQAIQYFKKMMY 390 (520)
Q Consensus 352 ~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 390 (520)
+.|++..+ .+...+..|...|.. .+++++|...|++..+
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 44443332 233344444444444 3444444444444444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00015 Score=53.12 Aligned_cols=76 Identities=9% Similarity=-0.001 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHhhCCC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 433 VKHHTVVVNLLSRVGQVDKALNFINKMPE---------TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
..-...++..+.+.|+++.|...++.+.. .+...++..+..++.+.|++++|...+++++++.|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 33444566667777777777777665432 134567889999999999999999999999999999999977
Q ss_pred HHHhh
Q 010031 504 YCQTF 508 (520)
Q Consensus 504 ~l~~~ 508 (520)
.+..+
T Consensus 85 n~~~~ 89 (104)
T 2v5f_A 85 NLKYF 89 (104)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 77633
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00013 Score=54.64 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=57.3
Q ss_pred HHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 451 KALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 451 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
+|++.+++... +.+...+..+..++...|++++|+..++++++.+|+++.++..+|.++...|+.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 70 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHH
Confidence 46666766543 3467889999999999999999999999999999999999999999999999854
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00024 Score=67.97 Aligned_cols=121 Identities=13% Similarity=0.090 Sum_probs=81.9
Q ss_pred HHhcCCHHHHHHHHhcCCC-------C-C---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCCHH-HHHH
Q 010031 341 YAKCGNIEAASLVFGETKE-------K-D---LLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-----G-TEPDGT-VFLA 402 (520)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~-------~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~p~~~-~~~~ 402 (520)
+...|++++|..++++... + + ..+++.|+.+|...|++++|+.++++..+- | -.|+.. +++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4455666666655544332 1 1 246778888888888888888888876541 2 123333 7888
Q ss_pred HHHHHHccCcHHHHHHHHHHcHh----hcCC-CCC-hhHHHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 403 ILTACWYSGQVKLALNFFDSMRF----DYFI-EPS-VKHHTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
|...|...|++++|..++++..+ ..|- .|+ ..+.+.+..++...|.+++|..++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999998887753 1221 122 34566777888888899999999887653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00087 Score=47.57 Aligned_cols=72 Identities=6% Similarity=-0.143 Sum_probs=57.1
Q ss_pred CCChhHHHHHHHHHhccCC---hHHHHHHHhhCCC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcch
Q 010031 430 EPSVKHHTVVVNLLSRVGQ---VDKALNFINKMPE-T-PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQA 501 (520)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 501 (520)
+.++..+..+..++...++ .++|..++++... . .++.....+...+.+.|++++|+..|+++++.+|+++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 4567777788887765444 7899999998765 3 456778888888999999999999999999999985554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00036 Score=50.62 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
...+..+..++...|++++|+..|++..+. .|+ ...|..+..++...|++++|.+.+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555555555555555555555552 232 2345555555555555555555555544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0012 Score=46.44 Aligned_cols=77 Identities=16% Similarity=0.308 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (520)
.+..+...+...|++++|+..+++..+. .| +...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~ 86 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 4455555566666666666666666553 23 33455555556666666666666666655321 2233444444444
Q ss_pred Hh
Q 010031 443 LS 444 (520)
Q Consensus 443 ~~ 444 (520)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00064 Score=63.90 Aligned_cols=95 Identities=12% Similarity=0.057 Sum_probs=66.5
Q ss_pred cCcHHHHHHHHHHcHhh--cCCCCC----hhHHHHHHHHHhccCChHHHHHHHhhCCC---------CCC-HHHHHHHHH
Q 010031 410 SGQVKLALNFFDSMRFD--YFIEPS----VKHHTVVVNLLSRVGQVDKALNFINKMPE---------TPD-FVIWGALFC 473 (520)
Q Consensus 410 ~g~~~~a~~~~~~~~~~--~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~-~~~~~~l~~ 473 (520)
.|++++|..++++..+. .-+.|+ ..+++.|+.+|...|++++|+.+++++.. .|+ ..+++.+..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777665432 112222 35677888888888888888888877543 244 236788888
Q ss_pred HHHHcCCHHHHHHHHHHHhc-----CCCCCcchhHH
Q 010031 474 ACRTHKDTKIAKIALQSSCS-----LNLSIPQAMSY 504 (520)
Q Consensus 474 ~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 504 (520)
.|...|++++|+.+++++++ +.|++|.+-..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 89999999999999999976 46888766543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=5e-05 Score=59.46 Aligned_cols=70 Identities=6% Similarity=-0.138 Sum_probs=60.1
Q ss_pred hccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 444 SRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDT----------KIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
.+.+.+++|++.+++... +.+...|..+..++...|++ ++|+..|+++++++|+++.++..+|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 355678999999988765 45688888888888887764 699999999999999999999999999998
Q ss_pred cc
Q 010031 512 KG 513 (520)
Q Consensus 512 ~g 513 (520)
.|
T Consensus 93 lg 94 (158)
T 1zu2_A 93 FA 94 (158)
T ss_dssp HH
T ss_pred hc
Confidence 76
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00013 Score=52.85 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=23.3
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChh-HHHHHHHHHhccCChHHHHHHHhhC
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVK-HHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
+...|++++|.+.++++.+.. +.+.. .+..+..+|.+.|++++|++.|++.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455555555555444321 12233 4444455555555555555555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0011 Score=62.36 Aligned_cols=101 Identities=10% Similarity=-0.069 Sum_probs=71.5
Q ss_pred HHHHHccCcHHHHHHHHHHcHhhc--CCCCC----hhHHHHHHHHHhccCChHHHHHHHhhCCC---------CCC-HHH
Q 010031 404 LTACWYSGQVKLALNFFDSMRFDY--FIEPS----VKHHTVVVNLLSRVGQVDKALNFINKMPE---------TPD-FVI 467 (520)
Q Consensus 404 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~-~~~ 467 (520)
+..+...|++++|..++++..+.. -+.|+ ..+++.++.+|...|++++|+.+++++.. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556678888888887765321 12222 35678888888888888888888877543 233 236
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc-----CCCCCcchhHH
Q 010031 468 WGALFCACRTHKDTKIAKIALQSSCS-----LNLSIPQAMSY 504 (520)
Q Consensus 468 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 504 (520)
++.+...|...|++++|+.+++++++ +.|++|.+...
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 77888889999999999999999976 46888766554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0052 Score=45.60 Aligned_cols=102 Identities=11% Similarity=-0.105 Sum_probs=75.0
Q ss_pred HccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHH---HHHHHhhCCCC--C--CHHHHHHHHHHHHHcCC
Q 010031 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK---ALNFINKMPET--P--DFVIWGALFCACRTHKD 480 (520)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~ 480 (520)
.....+..+.+.|...... + .++..+-..+.+++.+..+... ++.+++.+... | .......+.-++.+.|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence 3444555666666665532 3 3777777788899998887666 88888886653 3 22345556677999999
Q ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 481 TKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 481 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
+++|.+.++.+++..|+|.++......+-.+
T Consensus 90 Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQNNQAKELERLIDKA 120 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998776655443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.061 Score=55.60 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=95.2
Q ss_pred HHHHhcCChhHHHH-HhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010031 172 DMYVQLGKTRGAFK-VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250 (520)
Q Consensus 172 ~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 250 (520)
......++++.|.+ ++..+. +......++..+.+.|..+.|+.+.+. . ..-.......|++++|.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHH
Confidence 34456788888887 664433 122336677778888888888876642 1 11133456778899998
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCC
Q 010031 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330 (520)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (520)
++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+....+.+.....|.
T Consensus 673 ~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~--- 738 (814)
T 3mkq_A 673 DLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK--- 738 (814)
T ss_dssp HHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc---
Confidence 8887764 346788888889999999999888887643 22334444446666665555544444331
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHH
Q 010031 331 GAIGTALVDMYAKCGNIEAASLVF 354 (520)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~~a~~~~ 354 (520)
++....+|.+.|++++|.+++
T Consensus 739 ---~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 739 ---FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp ---HHHHHHHHHHHTCHHHHHHHH
T ss_pred ---hHHHHHHHHHcCCHHHHHHHH
Confidence 233344455566666666553
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.98 E-value=8.8e-06 Score=74.61 Aligned_cols=261 Identities=10% Similarity=0.092 Sum_probs=175.5
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHH
Q 010031 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLAD 172 (520)
Q Consensus 93 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 172 (520)
.+..|..|.++....+...+|++.|-+. -|+..|..++.+..+.|.+++-.+.+....+.. .++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 4456888999999999888888776332 356678889999999999999888887666543 45556678899
Q ss_pred HHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010031 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252 (520)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 252 (520)
+|++.++..+..+++. .|+..-...+.+-|...|.++.|.-+|..+.. |.-|..++.+.|++..|.+.
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTT
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHH
Confidence 9999998766433332 46666677788888999999988888876653 33444455666776666543
Q ss_pred HhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChh
Q 010031 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332 (520)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 332 (520)
-++. .++.||..+-.+|...+.+.-|.-.--.++- .|+ -...++..|...|.+++.+.+++.-... ......
T Consensus 193 ArKA--ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmG 264 (624)
T 3lvg_A 193 ARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMG 264 (624)
T ss_dssp TTTC--CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHH
T ss_pred HHhc--CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHH
Confidence 2221 3467888888888888887766544333332 222 2234555677888888888777766532 235667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC----C-------ChhHHHHHHHHHHHcCCHHHHH
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKE----K-------DLLTWTAMIWGLAIHGRYEQAI 382 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~ 382 (520)
+|+-|.-.|++- ++++..+-++.... | ....|.-++-.|.+-.+++.|.
T Consensus 265 mFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 265 MFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 777777777654 45555555543332 2 3456777777777777777664
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00079 Score=62.08 Aligned_cols=209 Identities=10% Similarity=0.069 Sum_probs=138.8
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 010031 62 SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141 (520)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 141 (520)
.+.+|..+..+....+.+.+|++.|-+. .|+..|..+|.+..+.|.+++-+..+...++..-.|... +.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHHh
Confidence 4567778888888888888887766433 566778889999999999999998887766643334333 568888999
Q ss_pred cCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCC--------------------CCCCchh
Q 010031 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN--------------------KSESVLL 201 (520)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------------~~~~~~~ 201 (520)
.++..+.++.+. .|+..-...+.+-|...|.++.|.-+|..+..-. -..++.|
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888877555443 3666666677777888888888777776654211 1347889
Q ss_pred HHHHHHHHHhcCChhHHHHH----HhhCCC-----------------------------CCHHHHHHHHHHHHhcCCHHH
Q 010031 202 WNVLINGCSKIGYLRKAVEL----FGMMPK-----------------------------KNVASWVSLIDGFMRKGDLKK 248 (520)
Q Consensus 202 ~~~l~~~~~~~g~~~~a~~~----~~~~~~-----------------------------~~~~~~~~l~~~~~~~~~~~~ 248 (520)
|-.+..+|...+.+.-|.-. .-...+ .....|+.|.-.|++- ++++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeK 280 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQK 280 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHH
Confidence 99999999988876654322 211110 2334566776666664 4444
Q ss_pred HHHHHhcCCC----C-------CcccHHHHHHHHHhCCChhHHHH
Q 010031 249 AGELFEQMPE----K-------GVVSWTAMINGFSQNGEAEKALA 282 (520)
Q Consensus 249 a~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~~ 282 (520)
..+.++-.-. | ....|.-++-.|++-.+++.|..
T Consensus 281 lmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 281 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 4444443322 1 13468888888888888776653
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.13 Score=40.87 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=85.8
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 010031 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418 (520)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 418 (520)
+.....|+++.|.++.+.+ .+...|..|.......|+++-|++.|++... +..+.-.|...|+.+...+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456678888888887665 4567888888888888888888888887643 2334444556777776665
Q ss_pred HHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010031 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSS 491 (520)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 491 (520)
+-+.... .| -++.-..++.-.|+++++++++.+...-|. -+......|-.+.|.++.+.+
T Consensus 82 la~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~e------A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPL------AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHH------HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHH------HHHHHHHcCcHHHHHHHHHHh
Confidence 5554442 11 234555666778999999999888765221 112233477778888887766
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.11 Score=53.81 Aligned_cols=132 Identities=10% Similarity=0.055 Sum_probs=73.9
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHH
Q 010031 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379 (520)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 379 (520)
..++..+.+.|..+.|.++.+. . ..-.......|+++.|.++.+.+. +...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 4455555566666666554421 1 011233455677888877776653 4567777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhC
Q 010031 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 380 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
.|++.|.++.. |..+...+...|+.+...++.+.... .| -++.-..+|.+.|++++|++++.++
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 88888877643 22333334445555555544444432 11 1233344455566666666666665
Q ss_pred CC
Q 010031 460 PE 461 (520)
Q Consensus 460 ~~ 461 (520)
..
T Consensus 763 ~~ 764 (814)
T 3mkq_A 763 QR 764 (814)
T ss_dssp TC
T ss_pred CC
Confidence 53
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.043 Score=49.55 Aligned_cols=72 Identities=8% Similarity=0.045 Sum_probs=49.1
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHH
Q 010031 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436 (520)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 436 (520)
.+..+|..+...+...|++++|...++++... .|+...|..+...+...|++++|.+.+++... +.|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChH
Confidence 35556666666666667778888777777774 36666666666677777788887777777764 35665554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0065 Score=57.08 Aligned_cols=87 Identities=9% Similarity=0.008 Sum_probs=65.0
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC---H-HHHHHHHHHHHccCcHHHHHHHHHHcHhh----cC-CCCC-hhHHHHHHH
Q 010031 375 HGRYEQAIQYFKKMMYS---GTEPD---G-TVFLAILTACWYSGQVKLALNFFDSMRFD----YF-IEPS-VKHHTVVVN 441 (520)
Q Consensus 375 ~~~~~~a~~~~~~~~~~---~~~p~---~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~-~~~~~~l~~ 441 (520)
.|++++|+.++++..+. -+.|+ . .+++.|..+|...|++++|..++++..+- .| -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46788888888877652 22333 2 37888899999999999999998887531 22 1233 357899999
Q ss_pred HHhccCChHHHHHHHhhCCC
Q 010031 442 LLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~ 461 (520)
+|...|++++|+.+++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0049 Score=43.61 Aligned_cols=55 Identities=11% Similarity=-0.126 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 462 TPDFVIWGALFCACRTHKD---TKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 462 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
++++..+..+..++...++ .++|..+++++++++|+++.+...+|..+.+.|+.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~ 60 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQ 60 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHH
Confidence 4577888888888765554 799999999999999999999999999999999854
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.014 Score=55.00 Aligned_cols=93 Identities=18% Similarity=0.148 Sum_probs=69.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC---CCCCH----HHHHHHHHHHHccCcHHHHHHHHHHcHhh----cC-CCCC-hhH
Q 010031 369 IWGLAIHGRYEQAIQYFKKMMYSG---TEPDG----TVFLAILTACWYSGQVKLALNFFDSMRFD----YF-IEPS-VKH 435 (520)
Q Consensus 369 ~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~-~~~ 435 (520)
+..+...|++++|+.++++..+.. +.|+. .+++.+..+|...|++++|+.+++++.+- .| ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444567788999999998887531 22332 37888888999999999999998877532 11 1233 357
Q ss_pred HHHHHHHHhccCChHHHHHHHhhCCC
Q 010031 436 HTVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
++.|...|...|++++|+.+++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999988653
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=1.2 Score=43.71 Aligned_cols=114 Identities=9% Similarity=-0.077 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHH
Q 010031 376 GRYEQAIQYFKKMMYSGTEPDGT----VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451 (520)
Q Consensus 376 ~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 451 (520)
.+.+.|...+....+.+ ..+.. ....+.......+...++...+..... . .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-R--SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-T--CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-c--CCChHHHHHHHHHHHHCCCHHH
Confidence 48899999999887543 22333 233333344445535566666666542 2 3444334444555567899999
Q ss_pred HHHHHhhCCCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010031 452 ALNFINKMPETP-D-FVIWGALFCACRTHKDTKIAKIALQSSCS 493 (520)
Q Consensus 452 A~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 493 (520)
|...|+.|...+ + ..-..=+..++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999998642 2 33333455677889999999999999975
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.077 Score=40.96 Aligned_cols=86 Identities=9% Similarity=0.053 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---cHHHHHHHHHHcHhhcCCCC--ChhHHHHHHHHHhccCChHHH
Q 010031 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG---QVKLALNFFDSMRFDYFIEP--SVKHHTVVVNLLSRVGQVDKA 452 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 452 (520)
...+.+-|.+..+.|. ++..+...+..++++++ ++++++.+++...+.. .| ....+-.+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHH
Confidence 4456666666666554 67777778888888887 7779999999887532 24 345666778888999999999
Q ss_pred HHHHhhCCC-CCCHH
Q 010031 453 LNFINKMPE-TPDFV 466 (520)
Q Consensus 453 ~~~~~~~~~-~~~~~ 466 (520)
.+.++.+.+ +|+..
T Consensus 91 ~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCCCCH
Confidence 999998775 56543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.29 Score=38.86 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=20.6
Q ss_pred HhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010031 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256 (520)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 256 (520)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3444444444444433 23444444444444444444444444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.073 Score=39.64 Aligned_cols=82 Identities=9% Similarity=-0.001 Sum_probs=61.6
Q ss_pred CCChhHHHHHHHHHhccCCh---HHHHHHHhhCCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 430 EPSVKHHTVVVNLLSRVGQV---DKALNFINKMPE-TP--DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
.|+..+--.+.+++.+..+. .+++.+++.+.. .| ....+..+.-++.+.|++++|.+..+.+++..|+|.++..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 56777767778888877654 457777776543 34 2446667777899999999999999999999999999887
Q ss_pred HHHhhhhh
Q 010031 504 YCQTFMQQ 511 (520)
Q Consensus 504 ~l~~~~~~ 511 (520)
....+-.+
T Consensus 117 Lk~~Ie~k 124 (134)
T 3o48_A 117 LKSMVEDK 124 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76555443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.1 Score=39.70 Aligned_cols=114 Identities=12% Similarity=0.248 Sum_probs=79.2
Q ss_pred CCCCcchHHHHHHHHHhCCCh------hHHHHHHHHhhhCCCCCCcc----cHHHHHHH---HhccCChhhHHHHHHHHH
Q 010031 90 TPKNLHIFNVLIRGLAENSHF------QSCISHFVFMLRLSVRPNRL----TYPFVSKS---VASLSLLSLGRGLHCLIV 156 (520)
Q Consensus 90 ~~~~~~~~~~li~~~~~~~~~------~~A~~~~~~m~~~~~~p~~~----~~~~ll~~---~~~~~~~~~a~~~~~~~~ 156 (520)
.+.|..+|-..+...-+.|++ ++.+++|++... .++|+.. .|..+.-- +...++.++|+++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345777888888888878888 888889988876 4666542 22222221 123478999999999998
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHH
Q 010031 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206 (520)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 206 (520)
+.+-.. ..+|......-.++|+++.|++++......+.. +.......+
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~ 135 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIAL 135 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHH
Confidence 764333 677888888888999999999999888776533 344444333
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.021 Score=49.36 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcc-----CcHHHHHHHHHHcHhhcCCCCC--hhHHHHHHHHHhcc-C
Q 010031 379 EQAIQYFKKMMYSGTEPD---GTVFLAILTACWYS-----GQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRV-G 447 (520)
Q Consensus 379 ~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~-g 447 (520)
..|...+++.++ +.|+ ...|..+...|... |+.++|.+.|++..+ +.|+ ..++....+.+++. |
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcC
Confidence 344444444444 3444 22444444444442 455555555555443 1231 33334444444442 4
Q ss_pred ChHHHHHHHhhC
Q 010031 448 QVDKALNFINKM 459 (520)
Q Consensus 448 ~~~~A~~~~~~~ 459 (520)
+.+++.+.+++.
T Consensus 255 d~~~a~~~L~kA 266 (301)
T 3u64_A 255 NRAGFDEALDRA 266 (301)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 455555554443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.16 Score=38.36 Aligned_cols=82 Identities=9% Similarity=0.009 Sum_probs=60.3
Q ss_pred CCChhHHHHHHHHHhccCChH---HHHHHHhhCCC-CC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 430 EPSVKHHTVVVNLLSRVGQVD---KALNFINKMPE-TP-D-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~-~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
.|+..+--.+.+++.+..+.+ +++.+++.+.. .| + ......+.-++.+.|++++|.++.+.+++..|+|.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 566666667778888776544 56667766543 34 2 334555667799999999999999999999999999887
Q ss_pred HHHhhhhh
Q 010031 504 YCQTFMQQ 511 (520)
Q Consensus 504 ~l~~~~~~ 511 (520)
....+-.+
T Consensus 116 Lk~~Ie~~ 123 (144)
T 1y8m_A 116 LKSMVEDK 123 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.12 Score=37.26 Aligned_cols=62 Identities=10% Similarity=0.002 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----C-CCCHHHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSG-----T-EPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
.+..++..+...|++..|...|+...+.- . .+....+..+..++.+.|+++.|..+++++.+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34556666777777777777777765521 1 12234666666777777777777777777664
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.71 Score=43.52 Aligned_cols=158 Identities=8% Similarity=0.043 Sum_probs=91.8
Q ss_pred HHHHHHHHhcCChhHHHHHHhhCCC-----C----CHHHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC-----ccc
Q 010031 203 NVLINGCSKIGYLRKAVELFGMMPK-----K----NVASWVSLIDGFMRKGDLKKAGELFEQMPE-----KG-----VVS 263 (520)
Q Consensus 203 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~ 263 (520)
..|...+...|++.+|..++..+.. - -...+...++.|...+++..|..++.++.. +. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4566777788888888888777642 1 123566667778888888888877776531 11 234
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHH----HHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 010031 264 WTAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVV----SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338 (520)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (520)
+...+..+...+++.+|.+.|.+.... ....+...+. .++.+..-.+..+.-..++.........++...+..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 566667777788888888887776542 1111222221 11111111111122222333333222235667788888
Q ss_pred HHHHhc--CCHHHHHHHHhcCCCC
Q 010031 339 DMYAKC--GNIEAASLVFGETKEK 360 (520)
Q Consensus 339 ~~~~~~--~~~~~a~~~~~~~~~~ 360 (520)
.+|... .+++.+.+.|.....+
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHhchHhhhHHHHHHHHHHhcc
Confidence 888764 4678888888776654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.36 E-value=0.15 Score=38.87 Aligned_cols=102 Identities=10% Similarity=0.040 Sum_probs=59.4
Q ss_pred HHHHHHHHHHccCcH------HHHHHHHHHcHhhcCCCCChh-HHHHHHH------HHhccCChHHHHHHHhhCCC---C
Q 010031 399 VFLAILTACWYSGQV------KLALNFFDSMRFDYFIEPSVK-HHTVVVN------LLSRVGQVDKALNFINKMPE---T 462 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~---~ 462 (520)
+|...+....+.|+. ++.+++|++.... ++|+.. .|...+. .+...++.++|.++|+.+.. +
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKk 92 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKK 92 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHH
Confidence 455555444444555 5555666655532 344321 1111111 11234677777777776642 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 463 PDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 463 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
. ...|.....--.++|+..+|.+++.+++.+.|.....+.
T Consensus 93 F-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 93 F-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp B-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred H-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 3 556666666677899999999999999998887554443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.28 E-value=1.2 Score=33.24 Aligned_cols=137 Identities=10% Similarity=0.013 Sum_probs=79.7
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHhcCCH
Q 010031 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI---GTALVDMYAKCGNI 347 (520)
Q Consensus 271 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~ 347 (520)
+.-.|..++..++..+...+. +..-++.+|--....-+-+-..++++.+-+. .|... ...++.+|.+.+
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~C~NlKrVi~C~~~~n-- 88 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINN-- 88 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTT--
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcHhhhcHHHHHHHHHHhc--
Confidence 345667777777777766532 3444555554444445555555555544321 22211 123344444333
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhc
Q 010031 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427 (520)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 427 (520)
.+.......+..+...|.-++-.+++..+.. +-+|++.....+..+|.+.|+..+|.+++.++-+ .
T Consensus 89 ------------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~-k 154 (172)
T 1wy6_A 89 ------------TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK-K 154 (172)
T ss_dssp ------------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-T
T ss_pred ------------chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH-h
Confidence 2333445566777778888888888777533 2467777777788888888888888888877763 4
Q ss_pred CC
Q 010031 428 FI 429 (520)
Q Consensus 428 ~~ 429 (520)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 43
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.02 E-value=6.3 Score=40.54 Aligned_cols=250 Identities=13% Similarity=0.025 Sum_probs=120.5
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC---C---cccHHHHHHHHHhCCChhHHHHHHHHHHHcCC-------CCCHHHHHHHH-
Q 010031 238 DGFMRKGDLKKAGELFEQMPEK---G---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGV-------RANDFTVVSAL- 303 (520)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-------~p~~~~~~~l~- 303 (520)
-+....|+.++++.+++..... + +..-..+.-+....|..+++..++...+...- .+....-..+.
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3466778888888888887652 1 12223344455666666677777777654321 01111122222
Q ss_pred -HHhhccCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHhcCCC-CChhHHHHH--HHHHHHcCC
Q 010031 304 -SACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKE-KDLLTWTAM--IWGLAIHGR 377 (520)
Q Consensus 304 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l--~~~~~~~~~ 377 (520)
-++.-.++ +.+...+..+....- ... ...-++...+...|+-+....++..+.+ .+......+ .-++...|+
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 22333333 344555555443321 111 1122344445566777766666665433 222222223 333445677
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHH
Q 010031 378 YEQAIQYFKKMMYSGTEPDGTV--FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNF 455 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 455 (520)
.+.+..+.+.+... ..|.... ...+.-+|+..|+.....+++..+..+ ...++.-...+.-++...|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 77777777777652 1222221 122334566777777666677777642 122222222333344445555556666
Q ss_pred HhhCCCCCCHHHHHH--HHHHHHHcCCH-HHHHHHHHHHh
Q 010031 456 INKMPETPDFVIWGA--LFCACRTHKDT-KIAKIALQSSC 492 (520)
Q Consensus 456 ~~~~~~~~~~~~~~~--l~~~~~~~g~~-~~A~~~~~~~~ 492 (520)
++.+....|+.+-.. +.-+....|+. .+++..++++.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 655443333333222 22222223322 45566666654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.41 Score=37.28 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=14.5
Q ss_pred HHHHHHHhccCChHHHHHHHhhCCC
Q 010031 437 TVVVNLLSRVGQVDKALNFINKMPE 461 (520)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (520)
-.+..+|.+.|++++|+.+++.++.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3455556666666666666665554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.32 Score=42.10 Aligned_cols=92 Identities=10% Similarity=0.021 Sum_probs=68.2
Q ss_pred hhHHHHHHHHhhhCCCCCC---cccHHHHHHHHhc-----cCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-CCh
Q 010031 110 FQSCISHFVFMLRLSVRPN---RLTYPFVSKSVAS-----LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL-GKT 180 (520)
Q Consensus 110 ~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 180 (520)
...|..++++..+ +.|+ ...|..+...|.. -|+.+.|.+.|++.++.+..-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 3567777777777 4566 4467777777877 489999999999999976433577888888888884 899
Q ss_pred hHHHHHhccCCCCCCC--CCchhHH
Q 010031 181 RGAFKVFDETPEKNKS--ESVLLWN 203 (520)
Q Consensus 181 ~~a~~~~~~~~~~~~~--~~~~~~~ 203 (520)
+.+.+.+++....... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 9999999988876544 4444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.01 E-value=0.26 Score=36.54 Aligned_cols=87 Identities=8% Similarity=0.004 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHH---HHHHHHHcHhhcCCCC--ChhHHHHHHHHHhccCChH
Q 010031 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL---ALNFFDSMRFDYFIEP--SVKHHTVVVNLLSRVGQVD 450 (520)
Q Consensus 376 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 450 (520)
.....+.+-|.+....|. |+..+-..+..++.++.+... ++.+++.+.+. + .| .....-.|.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHH
Confidence 344556666666655544 777777778888888776555 88888887742 1 23 2344556778889999999
Q ss_pred HHHHHHhhCCC-CCCH
Q 010031 451 KALNFINKMPE-TPDF 465 (520)
Q Consensus 451 ~A~~~~~~~~~-~~~~ 465 (520)
+|.+.++.+.. +|+.
T Consensus 92 ~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 99999998765 5543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.76 E-value=0.46 Score=37.05 Aligned_cols=134 Identities=7% Similarity=-0.026 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChh-HH
Q 010031 366 TAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDG-------TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK-HH 436 (520)
Q Consensus 366 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~ 436 (520)
-.=+..+...|.++.|+-+...+... +..|+. .++..+..++...|++.+|...|++..+....-+... ..
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 33456667778888887777665442 122331 2556667777788888888888887654322222111 11
Q ss_pred HHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 437 TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
..+. ....... -+. ...+...-.-+..++.+.|++++|+.+++.+ -..-..|..-..||..|.
T Consensus 104 ~~~~----~~ss~p~---s~~---~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 104 PSTG----NSASTPQ---SQC---LPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLYK 166 (167)
T ss_dssp --------------------C---CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHCC
T ss_pred cccc----ccCCCcc---ccc---ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHhc
Confidence 1110 0000000 000 1123444445777899999999999998765 223346677777887764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.62 E-value=2.4 Score=31.66 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=51.0
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 432 SVKHHTVVVNLLSRVGQVDKALNFINKM-PE-TPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
+....+.-+..+...|+.++-.+++..+ .. +|++.....+..+|.+.|+..+|.+++.++.+.
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3445566777888889999988998884 43 578999999999999999999999999999764
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.57 E-value=6.9 Score=36.75 Aligned_cols=97 Identities=7% Similarity=0.061 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHHccCcHHHHHHHHHHcHhh-cCCCCC----h
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYS--GTEPDG---TVFLAILTACWYSGQVKLALNFFDSMRFD-YFIEPS----V 433 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~----~ 433 (520)
....|...+...|++.+|..++..+... |..+.. ..+..-++.|...+++.+|..++.++... ....++ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456788889999999999999998642 222221 26667778899999999999999987421 112222 2
Q ss_pred hHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 434 KHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
..+...+..+...+++.+|-+.|.++.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 456677888888899999988777654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.38 E-value=11 Score=38.76 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCC
Q 010031 166 VRVHLADMYVQLGKTRGAFKVFDETP 191 (520)
Q Consensus 166 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 191 (520)
-|..++.+..+.++.+.+.++|+.+.
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666667777777777777765
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=92.23 E-value=5.7 Score=36.42 Aligned_cols=92 Identities=11% Similarity=-0.021 Sum_probs=45.4
Q ss_pred HHHHHHHccCcHHHHHHHHHHcHhhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHhhCCC-----CCCHHHHHH--
Q 010031 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQVDKALNFINKMPE-----TPDFVIWGA-- 470 (520)
Q Consensus 402 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~-- 470 (520)
.++..|...|++.+|.+++.++.+...-..+ ..++..-+..|...|++.++...+.+... .+++.+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4555566666666666666666543211111 12344445556666666666666554321 122222111
Q ss_pred --HHHHHH-HcCCHHHHHHHHHHHhc
Q 010031 471 --LFCACR-THKDTKIAKIALQSSCS 493 (520)
Q Consensus 471 --l~~~~~-~~g~~~~A~~~~~~~~~ 493 (520)
-+..+. ..++++.|...|-++++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 112244 56666666666666653
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.11 E-value=12 Score=36.67 Aligned_cols=114 Identities=9% Similarity=0.121 Sum_probs=73.4
Q ss_pred CCHHHHHHHHhcCCC---CChh----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHH
Q 010031 345 GNIEAASLVFGETKE---KDLL----TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417 (520)
Q Consensus 345 ~~~~~a~~~~~~~~~---~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 417 (520)
.+.+.|...+....+ -+.. .+..++..+...+...++...+...... .++.......+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 378999998876542 1222 2333333344455355667777776553 345554555556566789999999
Q ss_pred HHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCC
Q 010031 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPET 462 (520)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (520)
..|+.|.... .....-.--+..++.+.|+.++|..+|+.+...
T Consensus 306 ~~~~~l~~~~--~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~ 348 (618)
T 1qsa_A 306 TWLARLPMEA--KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (618)
T ss_dssp HHHHHSCTTG--GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHccccc--cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 9999986421 122333344667888899999999999998753
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.94 E-value=8.2 Score=34.27 Aligned_cols=113 Identities=13% Similarity=0.016 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHH----HHhhhCCCCCCcccHHHHHHHH
Q 010031 64 RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF----VFMLRLSVRPNRLTYPFVSKSV 139 (520)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~~~~~ll~~~ 139 (520)
-.|.++..-|.+.+++++|++++-. -...+.+.|+...|.++- +-..+.++++|..+...++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3556677778889999999887643 234455667766665554 4445567888877777777776
Q ss_pred hccCChh-hHHHHHHHH----HHhC--CCCChhHHHHHHHHHHhcCChhHHHHHh
Q 010031 140 ASLSLLS-LGRGLHCLI----VKSG--VEYDAFVRVHLADMYVQLGKTRGAFKVF 187 (520)
Q Consensus 140 ~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 187 (520)
.....-+ .-..+.+.+ .+.| ..-|+.....+...|.+.+++.+|...|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6544311 112222222 2333 2345666666777777777777776666
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.83 E-value=8.1 Score=34.02 Aligned_cols=114 Identities=10% Similarity=-0.001 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHH----HHHhhhCCCCCCcccHHHHHHHH
Q 010031 64 RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISH----FVFMLRLSVRPNRLTYPFVSKSV 139 (520)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~~~~~ll~~~ 139 (520)
-.|.++..-|.+++++++|++++.. -...+.+.|+...|-++ .+...+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4556777778888889998887654 23445566776666554 44455567778777777777766
Q ss_pred hccCChh-hHHHHHHHHH----HhC--CCCChhHHHHHHHHHHhcCChhHHHHHhc
Q 010031 140 ASLSLLS-LGRGLHCLIV----KSG--VEYDAFVRVHLADMYVQLGKTRGAFKVFD 188 (520)
Q Consensus 140 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 188 (520)
.....-+ .-.++.+.++ +.| ...|+..+..+...|.+.|++.+|+..|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 5533211 1223333333 222 12355666666666666666666666553
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.78 E-value=1 Score=38.28 Aligned_cols=122 Identities=11% Similarity=0.053 Sum_probs=82.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChh----HHHHHHHHHh
Q 010031 370 WGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK----HHTVVVNLLS 444 (520)
Q Consensus 370 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~ 444 (520)
....+.|+++++++....-++. .| |...-..|+..+|-.|++++|.+-++...+ +.|+.. .|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a-- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA-- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH--
Confidence 3456789999999998888875 44 555777788899999999999999998875 356543 34444432
Q ss_pred ccCChHHHH-HHHhhCCC----CCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 445 RVGQVDKAL-NFINKMPE----TPDFVIWGALFCA--CRTHKDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 445 ~~g~~~~A~-~~~~~~~~----~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
+... ++|.--.. .....-...++.+ ....|+.++|..+-+++++..|..+....
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 2222 23322111 1122233344455 45689999999999999999888776555
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.96 E-value=3.6 Score=28.61 Aligned_cols=59 Identities=10% Similarity=0.043 Sum_probs=36.2
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 010031 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299 (520)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 299 (520)
..+...|++++|..+.+....||...|.+|- -.+.|..+++...+.++..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3455667777777777777767766665553 345666666666666666655 4444443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.71 E-value=2.5 Score=29.55 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
+.-+..+-++.+....+-|++......+++|.+.+++..|.++++.++.+.+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4445666777777778889999999999999999999999999999876543 33456766654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.67 E-value=5.7 Score=42.68 Aligned_cols=210 Identities=13% Similarity=0.060 Sum_probs=126.3
Q ss_pred HHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---------------------
Q 010031 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK--------------------- 360 (520)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------- 360 (520)
++..+...+..+.+.++... .+.++...-.+..+|...|++++|.+.|.+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44445555666555544322 1234444445677889999999999999876431
Q ss_pred -----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC
Q 010031 361 -----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG--T--VFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431 (520)
Q Consensus 361 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 431 (520)
-..-|..++..|.+.+.++.+.++-+..++..-.-+. . .|..+.+++...|++++|...+-.+.. .. .
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~--~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TP--L 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SS--S
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HH--H
Confidence 0123667788888999999999988887764222122 2 578888999999999999998877752 22 2
Q ss_pred ChhHHHHHHHHHhccCChHH------------HHHHHhh-CCC----CCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhc
Q 010031 432 SVKHHTVVVNLLSRVGQVDK------------ALNFINK-MPE----TPDFVIWGALFCACRTHKDTKI-AKIALQSSCS 493 (520)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~------------A~~~~~~-~~~----~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 493 (520)
-......|+..++..|..+. ..+++.. +.. ...+..|..|..-+..+||+.+ |.-+|+++.+
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 23456667777776665443 3333322 110 1112234444444566777754 5666777755
Q ss_pred CCC-----C------CcchhHHHHhhhhhccCCCccc
Q 010031 494 LNL-----S------IPQAMSYCQTFMQQKGDGRTWR 519 (520)
Q Consensus 494 ~~p-----~------~~~~~~~l~~~~~~~g~~~~~~ 519 (520)
+.. . ...+|....+++.-....+.|+
T Consensus 1050 L~~~~~~~~~~~~~~q~~~yL~~INaLslvd~~~aWI 1086 (1139)
T 4fhn_B 1050 YISTTELIGKKERTFIIEHYLIVLNTLELLPKEDTWI 1086 (1139)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHSCSSCCCC
T ss_pred hhhccccccchhHHHHHHHHHHHHHHHhcCChhhCEE
Confidence 421 1 1245566666666665555663
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.63 E-value=3.8 Score=28.52 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=24.4
Q ss_pred HHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 010031 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291 (520)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 291 (520)
+...|++++|..+.+...-||...|.+|-. .+.|..+++...+.++..+|
T Consensus 50 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 444555555555555555555555544432 23444444444444444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.02 E-value=1.8 Score=43.44 Aligned_cols=49 Identities=14% Similarity=-0.053 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 464 DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 464 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
+..-|..|+....+.+++++|.+.|+..+... -++.++..|..+|.+.+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R-Fs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVAR-FDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcC
Confidence 34457777777788888888888888888653 67777777887777655
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.32 E-value=13 Score=32.77 Aligned_cols=183 Identities=12% Similarity=0.096 Sum_probs=112.4
Q ss_pred HHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHH--
Q 010031 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM-- 283 (520)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-- 283 (520)
++.....|++=+|.+.+ .++..=|.+.+++++|.+++.. -...+.+.|+..-|-++
T Consensus 20 l~~~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHH
Confidence 44456677777777754 4777788888999999988644 23456677887666554
Q ss_pred --HHHHHHcCCCCCHHHHHHHHHHhhccCChH-HHHHHHHHHH----HcC--CCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 010031 284 --FFQMLDAGVRANDFTVVSALSACAKVGALE-AGVRVHNYIS----CND--FGLKGAIGTALVDMYAKCGNIEAASLVF 354 (520)
Q Consensus 284 --~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 354 (520)
++-..+.+.+++......++..+......+ .-.++++.+. +.| ..-++.....+...|.+.|++.+|..-|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 455556688889888888887775533211 2233444433 232 2346778888899999999999998876
Q ss_pred hcCCCCChhHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 355 GETKEKDLLTWTAMIWGLAIH---GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 355 ~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
-.....+...+..++.-+... |...++--+ ....+--|.-.|+...|..+++...+
T Consensus 158 i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf---------------~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 158 MLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF---------------FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH---------------HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HhCCCccHHHHHHHHHHHHHhcCCCCcchHHHH---------------HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 533322344444444433333 333322111 11122234567888888888887653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.01 E-value=1.7 Score=43.66 Aligned_cols=52 Identities=23% Similarity=0.160 Sum_probs=35.9
Q ss_pred HHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
|...|+++.|+++-++.... .+.+..+|..|..+|...|+++.|+-.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 45567777777777776642 13345677777777777777777777777766
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.83 E-value=4.4 Score=37.26 Aligned_cols=69 Identities=20% Similarity=0.289 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHh----hcCCCCChhHH
Q 010031 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRF----DYFIEPSVKHH 436 (520)
Q Consensus 366 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 436 (520)
..++..+...|+++++...+..+... .| +...+..++.++.+.|+..+|++.|+...+ +.|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34566677888888888888888763 44 566888888888888998888888887643 46888887653
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=87.20 E-value=11 Score=30.78 Aligned_cols=18 Identities=11% Similarity=0.016 Sum_probs=7.3
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 010031 228 KNVASWVSLIDGFMRKGD 245 (520)
Q Consensus 228 ~~~~~~~~l~~~~~~~~~ 245 (520)
++...-...+..+.+.+.
T Consensus 31 ~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 344333334444444443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=86.35 E-value=12 Score=30.48 Aligned_cols=46 Identities=13% Similarity=0.082 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 010031 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245 (520)
Q Consensus 200 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 245 (520)
..-...+.++.+.|+.+....+.+.+..++...-...+.++.+.++
T Consensus 96 ~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 96 WVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 3333344444444443333333333333444444444444444443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=86.01 E-value=21 Score=32.74 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010031 232 SWVSLIDGFMRKGDLKKAGELFEQMP 257 (520)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (520)
....|...|.+.|+.++..+++....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556666777777777777666654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.93 E-value=5.6 Score=42.73 Aligned_cols=169 Identities=8% Similarity=0.075 Sum_probs=95.0
Q ss_pred HHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChh
Q 010031 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146 (520)
Q Consensus 67 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 146 (520)
..++..+...+..+.|.++....+. +...--.+..++...|++++|.++|++... |+..+......+ .
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~----------~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVL----------R 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSH----------H
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhh----------c
Confidence 3455666667777777776655443 443334456678888999999999877542 332222111000 0
Q ss_pred hHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCC--CCC--chhHHHHHHHHHhcCChhHHHH
Q 010031 147 LGRGLHCLIVKSGV--EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK--SES--VLLWNVLINGCSKIGYLRKAVE 220 (520)
Q Consensus 147 ~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~a~~ 220 (520)
-+..+..... ..-..-|..++..+-+.+.++.+.++-....+... .++ ...|..+.+.+...|++++|..
T Consensus 884 ----~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 ----EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp ----HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred ----ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0111111110 11223566777777777777776665443322110 111 1257778888888888888887
Q ss_pred HHhhCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 010031 221 LFGMMPK--KNVASWVSLIDGFMRKGDLKKAGE 251 (520)
Q Consensus 221 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 251 (520)
.+-.+.. .-......|+...+..|..+.-..
T Consensus 960 aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 960 ALMVLSTTPLKKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhCCChhhhhC
Confidence 7765543 234566777777777777666543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.98 E-value=4.8 Score=28.21 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 010031 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339 (520)
Q Consensus 278 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (520)
=++.+-+..+....+.|++......+.+|.+.+++..|.++++-+..+- .....+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3555666666667788999999999999999999999999998876542 233556766654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.24 E-value=6.6 Score=29.23 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
|.-+..+-++.+....+-|++......+++|.+.+|+..|.++++-++.+. .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 344556666777777788999999999999999999999999999988654 344556776654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.87 E-value=8.8 Score=35.26 Aligned_cols=70 Identities=9% Similarity=-0.050 Sum_probs=46.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHH-----cCCCCChhHHH
Q 010031 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC-----NDFGLKGAIGT 335 (520)
Q Consensus 265 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 335 (520)
..++..+...|++.+|...+..+.... +.+...+..+|.++...|+..+|.+.|+...+ .|+.|++.+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 345566667777777777777766553 44666777777777777777777777776532 47777665543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=82.69 E-value=17 Score=29.24 Aligned_cols=141 Identities=11% Similarity=0.070 Sum_probs=58.0
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 010031 62 SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141 (520)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 141 (520)
+..+-...+..+.+.++.+..-.+.+.+..++...-...+.++...++. .+...+..+.. .++...-...+.++.+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3333333334444333323233333333334444444444555554443 23333333332 1444444445555555
Q ss_pred cCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCC
Q 010031 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214 (520)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 214 (520)
.++.+....+ ..+.. .++..+-...+.++.+.++.+....+. .+.. .++...-...+.++.+.|.
T Consensus 103 ~~~~~~~~~L-~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 103 IGDERAVEPL-IKALK---DEDWFVRIAAAFALGEIGDERAVEPLI-KALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HCCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHHHTCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred hCcHHHHHHH-HHHHc---CCCHHHHHHHHHHHHHhCCHHHHHHHH-HHHc---CCCHHHHHHHHHHHHHhCc
Confidence 5543322222 22221 345555555555555555533222222 2222 1234444444455555444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.84 E-value=8 Score=28.81 Aligned_cols=72 Identities=8% Similarity=0.037 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHHHHccC---cHHHHHHHHHHcHhhcCCCC--ChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCH
Q 010031 392 GTEPDGTVFLAILTACWYSG---QVKLALNFFDSMRFDYFIEP--SVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDF 465 (520)
Q Consensus 392 ~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 465 (520)
+-.|+..+--.+..++.++. +..+++.+++.+.+. .| ....+-.|.-++.+.|++++|.+..+.+.. .|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 34566666666666776655 455678888887743 24 234555677788888888888888888665 4554
Q ss_pred H
Q 010031 466 V 466 (520)
Q Consensus 466 ~ 466 (520)
.
T Consensus 112 ~ 112 (134)
T 3o48_A 112 K 112 (134)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.16 E-value=5.2 Score=37.39 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHH--
Q 010031 332 AIGTALVDMYAKCGNIEAASLVFGETKE------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY---SGTEPDGTVF-- 400 (520)
Q Consensus 332 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~-- 400 (520)
.+...+.+.|.+.|+++.|.+.+.++.. .-+..+-..++.+...+++..+...+.++.. .+-.|+...-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3556788888888888888888877654 2334677777888888888888888887654 2333333221
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcHhhc
Q 010031 401 LAILTACWYSGQVKLALNFFDSMRFDY 427 (520)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 427 (520)
..-...+...+++..|-..|-+....+
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 111223345778888888888887544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.58 E-value=16 Score=27.65 Aligned_cols=69 Identities=7% Similarity=0.015 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHHccC---cHHHHHHHHHHcHhhcCCCC--ChhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCH
Q 010031 394 EPDGTVFLAILTACWYSG---QVKLALNFFDSMRFDYFIEP--SVKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDF 465 (520)
Q Consensus 394 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 465 (520)
.|+..+-..+..++.++. +..+++.+++.+.+. .| .....-.|.-++.+.|++++|.+..+.+.+ +|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 566666666677777665 455677788887653 23 233445677788888888888888887654 4543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 520 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 7e-05
Identities = 25/204 (12%), Positives = 71/204 (34%), Gaps = 13/204 (6%)
Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAG 250
+ + W+ L + G + A+ F + ++++L + +A
Sbjct: 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223
Query: 251 ELFEQMPEKGVVSWTAMIN---GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL-SAC 306
+ + N + + G + A+ + + ++ ++ + L +A
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANAL 281
Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG---ETKEKDLL 363
+ G++ +N L ++ + GNIE A ++ E +
Sbjct: 282 KEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKK 387
+ + L G+ ++A+ ++K+
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKE 364
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 0.001
Identities = 46/359 (12%), Positives = 102/359 (28%), Gaps = 23/359 (6%)
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
LA Q G A + + + ++ + +L + + L ++
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFS----TLA 59
Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
+ L + + G++ K ++ E + + AL M
Sbjct: 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119
Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--------AIGTALVDMY 341
A + C + + LK + L ++
Sbjct: 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF 179
Query: 342 AKCGNIEAASLVFG---ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
G I A F L + + L +++A+ + + + S +
Sbjct: 180 NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL-SLSPNHAV 238
Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALNFIN 457
V + + G + LA++ + ++P + + N L G V +A + N
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRA---IELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 458 K--MPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514
L R + + A + + + A S + +QQ+G
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 520 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.68 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.27 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.26 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.25 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.24 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.2 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.14 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.14 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.0 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.99 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.94 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.9 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.85 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.81 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.8 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.78 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.77 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.75 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.72 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.58 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.53 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.49 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.4 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.39 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.37 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.3 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.28 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.28 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.23 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.22 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.15 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.15 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.14 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.1 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.06 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.05 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.03 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.93 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.84 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.77 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.72 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.53 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.48 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.35 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.21 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.03 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.92 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.78 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.53 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.95 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.56 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.34 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.98 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.6 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.88 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.55 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.01 | |
| d3bqoa1 | 204 | TRF1 {Human (Homo sapiens) [TaxId: 9606]} | 80.02 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.6e-25 Score=205.88 Aligned_cols=372 Identities=12% Similarity=0.100 Sum_probs=254.7
Q ss_pred HHHHhCCChhHHHHHHHHhhhCCCCCC-cccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 010031 102 RGLAENSHFQSCISHFVFMLRLSVRPN-RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180 (520)
Q Consensus 102 ~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 180 (520)
..+.+.|++++|.+.|+++.+. .|+ ...+..+...+...|++++|...++.+++... .+..++..+..+|.+.|++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhccc
Confidence 3445555666666666555542 232 33444444555555555555555555555431 2344555555555555555
Q ss_pred hHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcC---C
Q 010031 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM---P 257 (520)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~ 257 (520)
++|...+....... +.+...+........ ..+....+....... .
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 131 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALV-------------------------------AAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-------------------------------HHSCSSHHHHHHHHHHHHC
T ss_pred cccccccccccccc-ccccccccccccccc-------------------------------ccccccccccccccccccc
Confidence 55555555444332 222222222222222 222222222222111 1
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 010031 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337 (520)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 337 (520)
.................+....+...+....... +.+...+..+...+...|+++.|...++...+.. +.+...+..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 209 (388)
T d1w3ba_ 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINL 209 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 1223334445555666677777777777666553 3345666677777778888888888888877654 2355677778
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcH
Q 010031 338 VDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQV 413 (520)
Q Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 413 (520)
...+...|++++|...++.... .+...+..+...+...|++++|+..|+++.+ +.|+ ..++..+...+...|++
T Consensus 210 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~ 287 (388)
T d1w3ba_ 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCH
T ss_pred hhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCH
Confidence 8888888888888888876554 4556778888999999999999999999988 4565 45888899999999999
Q ss_pred HHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010031 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSS 491 (520)
Q Consensus 414 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 491 (520)
++|.+.++..... .+.+...+..+..++.+.|++++|++.+++... .| +..++..+..++...|++++|+..++++
T Consensus 288 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 365 (388)
T d1w3ba_ 288 AEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998753 356677888999999999999999999999765 44 5778999999999999999999999999
Q ss_pred hcCCCCCcchhHHHHhhhhhccC
Q 010031 492 CSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 492 ~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
++++|+++.++..+|.+|.+.||
T Consensus 366 l~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 366 IRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999997
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.1e-21 Score=180.48 Aligned_cols=374 Identities=12% Similarity=0.069 Sum_probs=257.6
Q ss_pred HHHHHhcCCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCC-cccHHHHHHHHhccCC
Q 010031 69 LISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN-RLTYPFVSKSVASLSL 144 (520)
Q Consensus 69 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~ 144 (520)
+...+.+.|++++|++.++++.+ .+...+..+...+.+.|++++|++.|++..+. .|+ ..++..+...+...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhhhhcc
Confidence 44556788999999999988643 46778899999999999999999999999884 354 4578888899999999
Q ss_pred hhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhh
Q 010031 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224 (520)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 224 (520)
+++|...+....+... .+..............+....+........... .................+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cccccccccccccccc-ccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence 9999999999998753 344455555555656666666555554433332 23344444444455555555555554443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010031 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304 (520)
Q Consensus 225 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 304 (520)
.... .......+..+...+...|++++|...+++..+.. +-+...+..+..
T Consensus 161 ~~~~----------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 211 (388)
T d1w3ba_ 161 AIET----------------------------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGN 211 (388)
T ss_dssp HHHH----------------------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhcc----------------------------CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhh
Confidence 3220 01112334445555555666666666666655542 223445556666
Q ss_pred HhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHH
Q 010031 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQA 381 (520)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 381 (520)
.+...|++++|...+......+. .+...+..+...+.+.|++++|...|++..+ .+..++..+...+...|++++|
T Consensus 212 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 290 (388)
T d1w3ba_ 212 VLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHH
T ss_pred hhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666666655442 3445555666667777777777777765433 3456777888888888999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 382 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
...++..... .+.+...+..+...+...|++++|++.+++..+ +.| +...+..++.+|.+.|++++|++.|+++.
T Consensus 291 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 366 (388)
T d1w3ba_ 291 EDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998888774 234556888888888899999999999998874 234 45678888999999999999999998865
Q ss_pred C-CC-CHHHHHHHHHHHHHcCC
Q 010031 461 E-TP-DFVIWGALFCACRTHKD 480 (520)
Q Consensus 461 ~-~~-~~~~~~~l~~~~~~~g~ 480 (520)
. .| +...|..+..++.+.||
T Consensus 367 ~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 367 RISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCTTCHHHHHHHHHHHHHTCC
T ss_pred HhCCCCHHHHHHHHHHHHHcCC
Confidence 4 45 46788888888888776
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=3.9e-15 Score=134.93 Aligned_cols=245 Identities=11% Similarity=-0.037 Sum_probs=162.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 010031 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346 (520)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (520)
....+.+.|++++|+..|+++++.. +-+..++..+..++...|+++.|...+.+..+..+ .+...+..+..+|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccccc
Confidence 4445555666666666666655542 22344555555555666666666666665555432 234455555555666666
Q ss_pred HHHHHHHHhcCCC--C----------------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHH
Q 010031 347 IEAASLVFGETKE--K----------------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTAC 407 (520)
Q Consensus 347 ~~~a~~~~~~~~~--~----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~ 407 (520)
+++|.+.++.... | +.......+..+...+.+.+|...+.+..+... .++...+..+...+
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 6666655554322 1 011111223334455678889999988877422 23456788888899
Q ss_pred HccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHH
Q 010031 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAK 485 (520)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~ 485 (520)
...|++++|+..+++..... +-+...|..++.+|.+.|++++|++.++++.. .| +...|..++.+|.+.|++++|+
T Consensus 183 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999987532 34567889999999999999999999998765 34 5778999999999999999999
Q ss_pred HHHHHHhcCCCCCcchh-----------HHHHhhhhhccCC
Q 010031 486 IALQSSCSLNLSIPQAM-----------SYCQTFMQQKGDG 515 (520)
Q Consensus 486 ~~~~~~~~~~p~~~~~~-----------~~l~~~~~~~g~~ 515 (520)
..|+++++++|+++... ..++.++...|+.
T Consensus 261 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~ 301 (323)
T d1fcha_ 261 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 301 (323)
T ss_dssp HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCH
Confidence 99999999999888754 4455566555554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=4.6e-14 Score=127.69 Aligned_cols=213 Identities=13% Similarity=0.015 Sum_probs=175.1
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCC
Q 010031 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGR 377 (520)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 377 (520)
.....+.+.|++++|...|+++.+..+ .+...+..+..+|...|++++|...+++..+ .+...|..++.++...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence 345567899999999999999998763 4677889999999999999999999988765 366788999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHH----------------HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 378 YEQAIQYFKKMMYSGTEPDGT----------------VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p~~~----------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
+++|.+.++++... .|+.. .....+..+...+.+.+|.+.+.+..+..+-.++..++..+..
T Consensus 103 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 103 QRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp HHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 99999999998873 33311 1112223344567788899999888754433455678888999
Q ss_pred HHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 442 LLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.+...|++++|+..+++... +.+...|..+..++...|++++|++.++++++++|+++.++..+|.++.+.|+.+
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHH
Confidence 99999999999999998654 3457789999999999999999999999999999999999999999999999844
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=2.2e-11 Score=108.62 Aligned_cols=210 Identities=7% Similarity=-0.011 Sum_probs=159.3
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhcCCC---CChhHHHHHHHHH
Q 010031 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG-NIEAASLVFGETKE---KDLLTWTAMIWGL 372 (520)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 372 (520)
..++.+...+.+.+.+++|...++++++.++ -+...|+....++...| ++++|...++...+ .+..+|+.+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 3455566667788899999999999998763 46667788888888776 58999999987765 4667899999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC---
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--- 448 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 448 (520)
...|++++|+..++++.+ +.|+ ...|..+...+...|++++|++.++++.+.. +.+...|+.+..++.+.|+
T Consensus 123 ~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--CccHHHHHHHHHHHHHccccch
Confidence 999999999999999988 4554 5589999999999999999999999988632 3456677777777666555
Q ss_pred ---hHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc--chhHHHHhhhhhc
Q 010031 449 ---VDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIP--QAMSYCQTFMQQK 512 (520)
Q Consensus 449 ---~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~ 512 (520)
+++|++.+.++.. .| +...|..+...+.. ...+++.+.+++++++.|+.. ..+..++.+|...
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence 5778888877654 34 56677777666544 446888999999988877644 4455667666554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=8.8e-11 Score=101.90 Aligned_cols=221 Identities=12% Similarity=-0.052 Sum_probs=141.2
Q ss_pred hhHHHHHHHHHHHcCC-CC--CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010031 277 AEKALAMFFQMLDAGV-RA--NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353 (520)
Q Consensus 277 ~~~a~~~~~~m~~~~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 353 (520)
.+.++.-+++...... .+ ...++..+..+|.+.|+++.|...|++.++.. +.++.++..+..+|...|++++|.+.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4455555566554321 11 12345555667777888888888888877665 34667777888888888888888888
Q ss_pred HhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCC
Q 010031 354 FGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429 (520)
Q Consensus 354 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 429 (520)
|+++.+ | +..++..++.++...|++++|...|++..+. .|+ ......+..++...+..+.+..+...... .
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 168 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-S-- 168 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-S--
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc-c--
Confidence 887665 3 4567888888999999999999999999884 443 33444444455566666665555555543 1
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHH-hhCCC----CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 430 EPSVKHHTVVVNLLSRVGQVDKALNFI-NKMPE----TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~----~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
.++...++ ++..+............. ..... .|+ ..+|..+...+...|++++|...|+++++.+|++...+.
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 23332322 233332222222222222 22221 132 346777888999999999999999999999999876554
Q ss_pred H
Q 010031 504 Y 504 (520)
Q Consensus 504 ~ 504 (520)
.
T Consensus 248 ~ 248 (259)
T d1xnfa_ 248 Y 248 (259)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=4.4e-12 Score=114.90 Aligned_cols=229 Identities=5% Similarity=-0.105 Sum_probs=169.7
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc--CChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHhcCCHHH
Q 010031 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV--GALEAGVRVHNYISCNDFGLKGAI-GTALVDMYAKCGNIEA 349 (520)
Q Consensus 273 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ 349 (520)
..|++++|+.+++...... +-+...+.....++... ++.+.+...+..+.+.... +... +......+...+.+++
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHH
Confidence 3455788999999988764 34555666665555554 4578999999999887543 3444 3455577888999999
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhh
Q 010031 350 ASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426 (520)
Q Consensus 350 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 426 (520)
|...++.+.+ .+...|+.+...+...|++++|...+++..+ +.|+.. .+...+...+..+++...+......
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHHh
Confidence 9999998887 3567899999999999999888766665544 223222 2223345556667777777777642
Q ss_pred cCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHH
Q 010031 427 YFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSY 504 (520)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 504 (520)
. +++...+..++..+...|+.++|...+.+... .| +..+|..++.++...|++++|.+.++++++++|+++..|..
T Consensus 238 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~ 315 (334)
T d1dcea1 238 R--AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315 (334)
T ss_dssp C--CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred C--cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence 2 44555666778888889999999999988665 34 35678888889999999999999999999999999999998
Q ss_pred HHhhhh
Q 010031 505 CQTFMQ 510 (520)
Q Consensus 505 l~~~~~ 510 (520)
++..+.
T Consensus 316 L~~~~~ 321 (334)
T d1dcea1 316 LRSKFL 321 (334)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 877665
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=6.4e-10 Score=98.92 Aligned_cols=221 Identities=10% Similarity=0.025 Sum_probs=165.0
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhh--------------ccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 010031 278 EKALAMFFQMLDAGVRANDFTVVSALSACA--------------KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343 (520)
Q Consensus 278 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~--------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (520)
+.+..+|++++.. ++.++..|...+.-+. ..+..+.+..++++..+...+.+...+...+..+..
T Consensus 33 ~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 4456667776664 2334444443333221 223457888899998876555666778888899999
Q ss_pred cCCHHHHHHHHhcCCC--C-C-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCcHHHHHH
Q 010031 344 CGNIEAASLVFGETKE--K-D-LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT-ACWYSGQVKLALN 418 (520)
Q Consensus 344 ~~~~~~a~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~a~~ 418 (520)
.|+++.|..+|+.+.+ | + ...|...+..+.+.|+.+.|.++|+++.+.+.. +...|..... -+...|+.+.|..
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHH
Confidence 9999999999998765 2 2 347889999999999999999999999885432 3334444333 2345689999999
Q ss_pred HHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010031 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE----TP--DFVIWGALFCACRTHKDTKIAKIALQSSC 492 (520)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 492 (520)
+|+.+.... +.+...|...+..+.+.|+++.|..+|++... +| ....|...+.--...|+.+.+..+++++.
T Consensus 191 i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998643 55677899999999999999999999998643 22 24578888888888999999999999999
Q ss_pred cCCCCCcchh
Q 010031 493 SLNLSIPQAM 502 (520)
Q Consensus 493 ~~~p~~~~~~ 502 (520)
+..|+.+..-
T Consensus 269 ~~~~~~~~~~ 278 (308)
T d2onda1 269 TAFREEYEGK 278 (308)
T ss_dssp HHTTTTTSSC
T ss_pred HHCccccccc
Confidence 9999876543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=3.7e-10 Score=100.51 Aligned_cols=242 Identities=9% Similarity=0.046 Sum_probs=169.2
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC-ChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (520)
.++.+...+.+.+.+++|+.+++++++.+ +-+...|+....++...| ++++|...++.+.+... -+..+|..+..++
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHHH
Confidence 46667777888888999999999988863 335556666666777665 58899999998887763 4677888888889
Q ss_pred HhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC------
Q 010031 342 AKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSG------ 411 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g------ 411 (520)
.+.|++++|++.++++.+ .+...|..++..+...|++++|+..++++++ +.| +...|+.+...+.+.+
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccchhh
Confidence 999999999999988776 4678899999999999999999999999998 455 4457776665555444
Q ss_pred cHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC----CCCHHHHHHHHHHHHHc--CC-----
Q 010031 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE----TPDFVIWGALFCACRTH--KD----- 480 (520)
Q Consensus 412 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~--g~----- 480 (520)
.+++|++.+.++.+.. +.+...|..+...+...| .+++.+.++.... ..+...+..+...|... ++
T Consensus 201 ~~~~ai~~~~~al~~~--P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 277 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277 (315)
T ss_dssp HHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred hhHHhHHHHHHHHHhC--CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4788999888887532 345667777776665544 4666666655432 23455666666665432 33
Q ss_pred --HHHHHHHHHHHh-cCCCCCcchhHHHHhhhhh
Q 010031 481 --TKIAKIALQSSC-SLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 481 --~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~ 511 (520)
+++|..+++... +.+|-....|.+++..+..
T Consensus 278 ~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l~~ 311 (315)
T d2h6fa1 278 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 311 (315)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 344445544432 4566655667777666543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1.3e-09 Score=99.13 Aligned_cols=234 Identities=11% Similarity=0.028 Sum_probs=144.9
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccCChHHHHHHHHHHHHc----CCCCC---
Q 010031 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGV-RAN----DFTVVSALSACAKVGALEAGVRVHNYISCN----DFGLK--- 330 (520)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--- 330 (520)
++..+...|...|++++|...|++...... .++ ..++..+...+...|++..+...+...... .....
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 344555666666666666666666543210 111 123334445556667777776666654331 11111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--
Q 010031 331 GAIGTALVDMYAKCGNIEAASLVFGETKE--------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS----GTEPD-- 396 (520)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-- 396 (520)
...+..+...+...|+++.+...+..... .....+......+...+++..+...+.+.... +..+.
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 12344556667777777777776655432 12234555666777788888888887766542 11111
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC--hhHHHHHHHHHhccCChHHHHHHHhhCCC-------CCC-HH
Q 010031 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVGQVDKALNFINKMPE-------TPD-FV 466 (520)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~-~~ 466 (520)
...+..+...+...|++++|...++.......-.+. ...+..+..++...|++++|...++++.. .|+ ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 124555666778889999999999887642211111 23455678889999999999999887642 222 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 010031 467 IWGALFCACRTHKDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 496 (520)
.+..+..++...|++++|.+.+++++++.+
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 677778889999999999999999988654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=5.6e-09 Score=94.79 Aligned_cols=252 Identities=10% Similarity=-0.045 Sum_probs=184.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHhhccCChHHHHHHHHHHHHcCCC-C----ChhHHH
Q 010031 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRAN----DFTVVSALSACAKVGALEAGVRVHNYISCNDFG-L----KGAIGT 335 (520)
Q Consensus 265 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~ 335 (520)
......+...|++++|++++++.++.....+ ...+..+..++...|++++|...++...+.... + ....+.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3345667899999999999999887532211 235666778889999999999999988653211 1 123445
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC-------C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHH
Q 010031 336 ALVDMYAKCGNIEAASLVFGETKE-------K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE----PDGTVF 400 (520)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----p~~~~~ 400 (520)
.+...+...|++..+...+..... + ....+..+...+...|+++.+...+......... .....+
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 667788899999999888775432 1 1235666778889999999999999988764222 223456
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHhhCCC-C-----CCHHHHH
Q 010031 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQVDKALNFINKMPE-T-----PDFVIWG 469 (520)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~ 469 (520)
......+...++...+...+........-... ...+..+...+...|++++|...+++... . .....+.
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 66667788889999999888776542211111 23456677788899999999999998765 1 1234566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHh------cCCCCCcchhHHHHhhhhhccCCC
Q 010031 470 ALFCACRTHKDTKIAKIALQSSC------SLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~~~------~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.+..++...|++++|...+++++ ...|+.+.++..+|.+|...|+.+
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 308 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 308 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHH
Confidence 77888999999999999999997 345777788999999999999854
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=2.1e-09 Score=79.74 Aligned_cols=105 Identities=12% Similarity=-0.080 Sum_probs=91.8
Q ss_pred HHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCC
Q 010031 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKD 480 (520)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 480 (520)
-...+...|++++|+..|.+..+.. +.+...|..+..+|.+.|++++|+..++++.. +.++..|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 3456788999999999999998542 45677899999999999999999999998765 5568899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHhhh
Q 010031 481 TKIAKIALQSSCSLNLSIPQAMSYCQTFM 509 (520)
Q Consensus 481 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 509 (520)
+++|+..++++++++|+++.++..++.+-
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 99999999999999999999998887764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.99 E-value=1.7e-08 Score=89.40 Aligned_cols=201 Identities=9% Similarity=-0.012 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHH--------------hcCCHHHHHHHHhcCCC----CChhHHHHHHHHHHH
Q 010031 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYA--------------KCGNIEAASLVFGETKE----KDLLTWTAMIWGLAI 374 (520)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~ 374 (520)
+.+..+|++++... +.++.+|...+..+. ..+..++|..+|++..+ .+...|...+.....
T Consensus 33 ~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 34555666665442 334555544444332 22345788888887543 355678888889999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHH-HhccCChHHHH
Q 010031 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL-LSRVGQVDKAL 453 (520)
Q Consensus 375 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~ 453 (520)
.|+++.|..+|+++.+.........|..++..+.+.|+++.|.++|+++.+.. +.+...|...+.. +...|+.+.|.
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~--~~~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhccCHHHHH
Confidence 99999999999999985333334578999999999999999999999998532 3444555554443 33468999999
Q ss_pred HHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcc----hhHHHHhhhhhccCCC
Q 010031 454 NFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQ----AMSYCQTFMQQKGDGR 516 (520)
Q Consensus 454 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~ 516 (520)
.+|+.+.. +.+...|...+..+...|+.++|..+|+++++..|.+|. .|.....+-...|+..
T Consensus 190 ~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~ 258 (308)
T d2onda1 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHH
Confidence 99999776 456789999999999999999999999999998887664 5666677777777743
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=3.3e-09 Score=78.79 Aligned_cols=111 Identities=12% Similarity=-0.078 Sum_probs=92.4
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCC---hHHHHHHHhhCCC-CCCH---HHHHHHHH
Q 010031 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ---VDKALNFINKMPE-TPDF---VIWGALFC 473 (520)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~---~~~~~l~~ 473 (520)
..+++.+...+++++|.+.|++..... +.++.++..++.++.+.++ +++|+++++++.. .|++ .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 457788888999999999999998632 5567888999999987554 5579999999765 3433 36788899
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 474 ACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 474 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
+|.+.|++++|+..|+++++++|+++.+...+..+..+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~ 120 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999888776643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=2.8e-08 Score=85.59 Aligned_cols=196 Identities=8% Similarity=-0.140 Sum_probs=114.1
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 010031 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (520)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (520)
.+|..+..+|.+.|++++|+..|++.+... +-++.++..+..++.+.|++++|...|+++.+... .+...+..+..+|
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHH
Confidence 355566677777777777777777777653 34556677777777777777777777777776543 3455666677777
Q ss_pred HhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCcHH
Q 010031 342 AKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY----SGQVK 414 (520)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 414 (520)
...|++++|...|+...+ | +......+..++...+..+.+..+........ ++...+. ++..+.. .+..+
T Consensus 116 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHH
Confidence 777777777777776554 2 33333333444455555555555555555432 2222221 1222211 12222
Q ss_pred HHHHHHHHcHhhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHhhCCC-CCCH
Q 010031 415 LALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQVDKALNFINKMPE-TPDF 465 (520)
Q Consensus 415 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 465 (520)
.+...+..... ..|+ ..+|..+...|...|++++|++.|++... .|+.
T Consensus 193 ~~~~~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 193 RLKADATDNTS---LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp HHHHHCCSHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHhhh---cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 22222222111 1122 24566788888889999999999988654 4554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=4.8e-08 Score=79.40 Aligned_cols=142 Identities=9% Similarity=-0.008 Sum_probs=92.1
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCcHHHH
Q 010031 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLA 416 (520)
Q Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a 416 (520)
...+...|+++.|++.|.++..++..+|..+..++...|++++|++.|++.++ +.|+.. .|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 34567788888888888888778888888888888888888888888888887 455444 777888888888888888
Q ss_pred HHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 010031 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPETP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLN 495 (520)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 495 (520)
++.|++..... +.+... .|...|. ..+. ...++..+..++.+.|++++|.+.+++++++.
T Consensus 90 ~~~~~kAl~~~--~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQL--RGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHTT--TTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC--ccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888876321 221100 0000000 0001 12344455556666677777777777766666
Q ss_pred CCCcc
Q 010031 496 LSIPQ 500 (520)
Q Consensus 496 p~~~~ 500 (520)
|+...
T Consensus 151 ~~~~~ 155 (192)
T d1hh8a_ 151 SEPRH 155 (192)
T ss_dssp CSGGG
T ss_pred CCcch
Confidence 65433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=1.9e-08 Score=79.24 Aligned_cols=105 Identities=9% Similarity=-0.103 Sum_probs=74.7
Q ss_pred HHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCH
Q 010031 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDT 481 (520)
Q Consensus 404 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 481 (520)
...|.+.|++++|+..|+++.+.. +.+...|..+..+|.+.|++++|+..|+++.. +.+...|..++.++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 445667777777777777776532 33456777777777777888888777777654 33456777777777788888
Q ss_pred HHHHHHHHHHhcCCCCCcchhHHHHhhhh
Q 010031 482 KIAKIALQSSCSLNLSIPQAMSYCQTFMQ 510 (520)
Q Consensus 482 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 510 (520)
++|...++++++++|+++.++..++.+..
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~ 123 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNK 123 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 88888888888888887777776665543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.80 E-value=6.3e-08 Score=84.83 Aligned_cols=146 Identities=9% Similarity=-0.079 Sum_probs=86.5
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh----
Q 010031 364 TWTAMIWGLAI-HGRYEQAIQYFKKMMYS----GTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV---- 433 (520)
Q Consensus 364 ~~~~l~~~~~~-~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---- 433 (520)
++..+...|.. .|++++|++.|++..+. +-.+. ..++..+...+...|++++|++.++++.....-.+..
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 34455555544 47888888888776541 11121 2256777788888888888888888876432111111
Q ss_pred -hHHHHHHHHHhccCChHHHHHHHhhCCC-CCC------HHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 434 -KHHTVVVNLLSRVGQVDKALNFINKMPE-TPD------FVIWGALFCACRT--HKDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 434 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
..+...+.++...|+++.|...+++... .|. ......++.++.. .+.+++|+..|+++.+++|.....+.
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~L~ 278 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 1234455566778888888888888664 221 2234455555544 34578888888877777664444444
Q ss_pred HHHhhh
Q 010031 504 YCQTFM 509 (520)
Q Consensus 504 ~l~~~~ 509 (520)
.+-..+
T Consensus 279 ~~k~~l 284 (290)
T d1qqea_ 279 KIKESI 284 (290)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 333333
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.78 E-value=1.4e-08 Score=83.71 Aligned_cols=104 Identities=13% Similarity=-0.084 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHH
Q 010031 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALF 472 (520)
Q Consensus 395 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~ 472 (520)
|+...+......+...|++++|+..|+++.... |.++..|..++.+|.+.|++++|+..|+++.. .| +...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 334444444445555555555555555544321 23344455555555555555555555555443 22 244455555
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCCcc
Q 010031 473 CACRTHKDTKIAKIALQSSCSLNLSIPQ 500 (520)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 500 (520)
.++...|++++|+..|+++++++|+++.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence 5555555555555555555555554433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.77 E-value=2.8e-08 Score=89.30 Aligned_cols=228 Identities=7% Similarity=-0.021 Sum_probs=144.2
Q ss_pred CCChhHHHHHHHHhhhCCCCCCc-ccHHHHHHHHhccC--ChhhHHHHHHHHHHhCCCCChhHHH-HHHHHHHhcCChhH
Q 010031 107 NSHFQSCISHFVFMLRLSVRPNR-LTYPFVSKSVASLS--LLSLGRGLHCLIVKSGVEYDAFVRV-HLADMYVQLGKTRG 182 (520)
Q Consensus 107 ~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~ 182 (520)
.|++++|+.+++...+. .|+. ..|..+..++...+ +++++...+..+.+... ++...+. .....+...+..+.
T Consensus 86 ~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 86 AALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHH
Confidence 34567788888887763 3433 34555555555544 47788888888887643 3344443 34466677888888
Q ss_pred HHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCC---CC
Q 010031 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP---EK 259 (520)
Q Consensus 183 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~ 259 (520)
|+..++...+.+ +-+...|+.+..++.+.|++++|...++...+-.... ......+...+..+++...+.... ..
T Consensus 163 Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~a~~~~~~~l~~~~~ 240 (334)
T d1dcea1 163 ELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE-LELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (334)
T ss_dssp HHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH-HHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH-HHHHHHHHHhcchhHHHHHHHHHHHhCcc
Confidence 998888888875 5577788888888888888887766665554411111 122233444555555655555432 22
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 010031 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339 (520)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (520)
+...+..++..+...|++++|...+.+..+.. +.+..++..+..++...|+.++|...++.+.+.++ .+...|..+..
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP-~~~~y~~~L~~ 318 (334)
T d1dcea1 241 PLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP-MRAAYLDDLRS 318 (334)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc-ccHHHHHHHHH
Confidence 34455556666777778888888877766542 22445666677778888888888888888877642 23344555544
Q ss_pred HH
Q 010031 340 MY 341 (520)
Q Consensus 340 ~~ 341 (520)
.+
T Consensus 319 ~~ 320 (334)
T d1dcea1 319 KF 320 (334)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=2.9e-07 Score=74.67 Aligned_cols=107 Identities=9% Similarity=-0.011 Sum_probs=84.1
Q ss_pred HHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHH
Q 010031 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTK 482 (520)
Q Consensus 405 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 482 (520)
..+...|+++.|++.|.++. +|++.+|..+..+|.+.|++++|++.|++... +.++..|..+..++.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence 34567888888888887653 56777888888899999999999999988765 345778888888899999999
Q ss_pred HHHHHHHHHhcCCCCCc----------------chhHHHHhhhhhccCCC
Q 010031 483 IAKIALQSSCSLNLSIP----------------QAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 483 ~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~ 516 (520)
+|+..|+++++..|.++ .++..+|.++...|+.+
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~ 137 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWK 137 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHH
Confidence 99999999987665543 34567888888888744
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=6.1e-08 Score=77.02 Aligned_cols=79 Identities=15% Similarity=-0.002 Sum_probs=68.7
Q ss_pred hHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 434 KHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
.+|+.+..+|.+.|++++|+..+++... .| ++..|..+..++...|++++|+..|+++++++|+++.+...++.+...
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3567788999999999999999998765 44 678899999999999999999999999999999999999988887654
Q ss_pred c
Q 010031 512 K 512 (520)
Q Consensus 512 ~ 512 (520)
.
T Consensus 143 ~ 143 (170)
T d1p5qa1 143 I 143 (170)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.59 E-value=2e-07 Score=72.49 Aligned_cols=129 Identities=12% Similarity=-0.028 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (520)
.+...+..+.+.|++.+|+..|++++.. .|... ...-........ .....+|..++.+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~--------~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKK--------NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhh--------hHHHHHHhhHHHHH
Confidence 4555667777888888888888887762 11100 000000000000 01124677899999
Q ss_pred hccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhcc
Q 010031 444 SRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKG 513 (520)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 513 (520)
.+.|++++|++.++++.. +.+...|..++.++...|++++|+..|+++++++|+++.+...+..+..+..
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 149 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999765 4467899999999999999999999999999999999999999888876654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=1.9e-06 Score=75.10 Aligned_cols=198 Identities=12% Similarity=0.007 Sum_probs=120.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCC-----CChhHHHH
Q 010031 267 MINGFSQNGEAEKALAMFFQMLDA----GVRA-NDFTVVSALSACAKVGALEAGVRVHNYISCNDFG-----LKGAIGTA 336 (520)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ 336 (520)
....|...|++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|...++...+.... ....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 455566666666666666665442 1111 1245566666677777777777777765432111 11234445
Q ss_pred HHHHHHh-cCCHHHHHHHHhcCCC-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CH-HHH
Q 010031 337 LVDMYAK-CGNIEAASLVFGETKE-----K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-----DG-TVF 400 (520)
Q Consensus 337 l~~~~~~-~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~-~~~ 400 (520)
+...|.. .|++++|.+.+++..+ . -..++..++..+...|++++|...|+++....... .. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 5555543 5788888877766543 1 12357778899999999999999999988742221 11 133
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC---hhHHHHHHHHHhc--cCChHHHHHHHhhCCCCCCH
Q 010031 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSR--VGQVDKALNFINKMPETPDF 465 (520)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~ 465 (520)
...+..+...|+++.|...+++..+...--++ ......++.++.. .+.+++|+..|+++.. -|+
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~-lD~ 271 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR-LDK 271 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC-CCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh-cCH
Confidence 44555667789999999999998742111111 2244566666655 3568999999988764 344
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.53 E-value=1.2e-07 Score=78.02 Aligned_cols=87 Identities=10% Similarity=-0.065 Sum_probs=78.8
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHh
Q 010031 430 EPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQT 507 (520)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 507 (520)
.|+...+...+..|.+.|++++|+..|+++.. +.++..|..+..+|.+.|++++|+..++++++++|+++.++..+|.
T Consensus 1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 36777777889999999999999999998764 4567889999999999999999999999999999999999999999
Q ss_pred hhhhccCCC
Q 010031 508 FMQQKGDGR 516 (520)
Q Consensus 508 ~~~~~g~~~ 516 (520)
+|...|+.+
T Consensus 81 ~~~~l~~~~ 89 (201)
T d2c2la1 81 CQLEMESYD 89 (201)
T ss_dssp HHHHTTCHH
T ss_pred HHHHCCCHH
Confidence 999999844
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.49 E-value=6.9e-07 Score=70.65 Aligned_cols=79 Identities=10% Similarity=-0.111 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 434 KHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
.+|..+..+|.+.|++++|+..++++.. +.+...|..+..++...|++++|+..|+++++++|+++.+...++.+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3566788889999999999999988765 45677888999999999999999999999999999999998888877654
Q ss_pred c
Q 010031 512 K 512 (520)
Q Consensus 512 ~ 512 (520)
.
T Consensus 145 ~ 145 (168)
T d1kt1a1 145 A 145 (168)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=1.9e-06 Score=63.20 Aligned_cols=100 Identities=11% Similarity=-0.044 Sum_probs=71.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (520)
-+..+...|++++|+..|++.++. .|+ ...|..+..++...|++++|+..+.+..+.. +.+...|..++.++...
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhc--cchhhHHHHHHHHHHHc
Confidence 455677788888888888888773 454 4477777888888888888888888877532 45567777888888888
Q ss_pred CChHHHHHHHhhCCC-CCC-HHHHHHH
Q 010031 447 GQVDKALNFINKMPE-TPD-FVIWGAL 471 (520)
Q Consensus 447 g~~~~A~~~~~~~~~-~~~-~~~~~~l 471 (520)
|++++|+..+++... .|+ +..+..+
T Consensus 85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l 111 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHEANNPQLKEGL 111 (117)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 888888888887654 344 3344333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.40 E-value=5.8e-07 Score=71.26 Aligned_cols=127 Identities=8% Similarity=-0.077 Sum_probs=92.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHh
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (520)
+......+...|++++|+..|+++++. .+. .......... .. . -+.....|..+..+|.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~----------~~~~~~~~~~------~~-~--~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEG----------SRAAAEDADG------AK-L--QPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHHSCHHHH------GG-G--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hhh----------hhhhhhhHHH------HH-h--ChhhHHHHHHHHHHHH
Confidence 445566677788888888888776541 110 0000111000 00 0 0223457788899999
Q ss_pred ccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 445 RVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 445 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
+.|++++|+..++++.. +.++..|..+..++...|++++|+..|+++++++|+++.+...+..+....
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l 158 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 158 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999765 456789999999999999999999999999999999999999988887653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.39 E-value=2e-07 Score=67.98 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=45.3
Q ss_pred HHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 439 VVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
++..+.+.|++++|+..++++.. .| ++..|..+..++.+.|++++|+..++++++++|+++.++..+|.+|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 44555566666666666665443 23 355566666666666666666666666666666666666666666666555
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=2.3e-06 Score=66.81 Aligned_cols=118 Identities=13% Similarity=-0.029 Sum_probs=83.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHh
Q 010031 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444 (520)
Q Consensus 366 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (520)
...+..|.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|+..|+++.+.. +.+...|..++.+|.
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHHHH
Confidence 34466778889999999999988884 554 4478888888888999999999998887532 334568888888899
Q ss_pred ccCChHHHHHHHhhCCC-CCC-HHHHHHHHHH--HHHcCCHHHHHHH
Q 010031 445 RVGQVDKALNFINKMPE-TPD-FVIWGALFCA--CRTHKDTKIAKIA 487 (520)
Q Consensus 445 ~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~--~~~~g~~~~A~~~ 487 (520)
..|++++|++.+++... .|+ ...+..+..+ ....+.+++|...
T Consensus 90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999988888664 343 4444444433 2334445555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=7.2e-07 Score=62.60 Aligned_cols=78 Identities=12% Similarity=-0.009 Sum_probs=63.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHhhCCC--------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHH
Q 010031 435 HHTVVVNLLSRVGQVDKALNFINKMPE--------TPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYC 505 (520)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 505 (520)
..-.++..+.+.|++++|+..|++... .++ ..++..+..++.+.|++++|+..++++++++|+++.++..+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 334677788888888888888877542 122 46788999999999999999999999999999999999999
Q ss_pred Hhhhhhc
Q 010031 506 QTFMQQK 512 (520)
Q Consensus 506 ~~~~~~~ 512 (520)
+.+....
T Consensus 87 ~~~~~~l 93 (95)
T d1tjca_ 87 KYFEYIM 93 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8876654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.28 E-value=1.8e-06 Score=62.76 Aligned_cols=87 Identities=11% Similarity=0.066 Sum_probs=43.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhcc
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (520)
++..+.+.|++++|+..|++.++. .|+ ..+|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHC
Confidence 344455555555555555555552 332 3355555555555555555555555554311 22344455555555555
Q ss_pred CChHHHHHHHhh
Q 010031 447 GQVDKALNFINK 458 (520)
Q Consensus 447 g~~~~A~~~~~~ 458 (520)
|++++|++.+++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 555555555544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.28 E-value=0.00023 Score=60.42 Aligned_cols=221 Identities=13% Similarity=-0.006 Sum_probs=106.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 010031 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK----VGALEAGVRVHNYISCNDFGLKGAIGTALVD 339 (520)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (520)
+..|...+...+++++|++.|++..+.| +...+..+...|.. ..+...+...+....+.+ ++.....+..
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~ 78 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence 3334444445555555555555555443 22233333333332 334555555555544433 1122222222
Q ss_pred HHHh----cCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-
Q 010031 340 MYAK----CGNIEAASLVFGETKEK-DLLTWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY- 409 (520)
Q Consensus 340 ~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 409 (520)
.+.. ..+.+.|...++...+. .......+...+.. ......+...+..... ..+...+..|...+..
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~L~~~~~~~ 155 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTILGSLYDAG 155 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHT
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhhhhhhhccC
Confidence 2221 23444444444433321 22222222222222 2344555555555554 2344455555555543
Q ss_pred ---cCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhc----cCChHHHHHHHhhCCCCCCHHHHHHHHHHHHH----c
Q 010031 410 ---SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR----VGQVDKALNFINKMPETPDFVIWGALFCACRT----H 478 (520)
Q Consensus 410 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~ 478 (520)
..+...+...++...+ ..+......+...|.. ..++++|+..|++..+.-++..+..|...|.+ .
T Consensus 156 ~~~~~~~~~~~~~~~~a~~----~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~ 231 (265)
T d1ouva_ 156 RGTPKDLKKALASYDKACD----LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVT 231 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSS
T ss_pred CCcccccccchhhhhcccc----ccccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCc
Confidence 3455666666666553 2344444445555543 45677777777776554456666666666654 3
Q ss_pred CCHHHHHHHHHHHhcCCCC
Q 010031 479 KDTKIAKIALQSSCSLNLS 497 (520)
Q Consensus 479 g~~~~A~~~~~~~~~~~p~ 497 (520)
.+.++|.+.|+++.+..+.
T Consensus 232 ~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 232 RNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CCSTTHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHHHHHCcCH
Confidence 3677778888777665543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.23 E-value=9.1e-05 Score=63.07 Aligned_cols=205 Identities=12% Similarity=-0.015 Sum_probs=148.7
Q ss_pred CHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhcCCCC-ChhHHHHHH
Q 010031 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK----CGNIEAASLVFGETKEK-DLLTWTAMI 369 (520)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~ 369 (520)
|+..+..+...+.+.+++++|.+.|++..+.| +...+..|...|.. ..++..|...+.....+ +......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccc
Confidence 34556666677778899999999999998876 45566667777776 66889999888876654 445555555
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----ccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 370 WGLAI----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW----YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 370 ~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
..+.. .++.+.|...++...+.|..+ ....+...+. .......+...+..... ..+...+..+..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~ 150 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGS 150 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhh
Confidence 55543 467899999999998865432 2222222222 34567778888877663 455667777777
Q ss_pred HHhc----cCChHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhh
Q 010031 442 LLSR----VGQVDKALNFINKMPETPDFVIWGALFCACRT----HKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQ 511 (520)
Q Consensus 442 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 511 (520)
.|.. ..+...+...++......++.....+...+.. ..++++|+..|+++.+. +++.++..||.+|..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~ 226 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYN 226 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHT
T ss_pred hhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHc
Confidence 7775 45677888888876656677877777777765 67999999999999887 468899999999874
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.22 E-value=0.00074 Score=58.62 Aligned_cols=134 Identities=8% Similarity=-0.046 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHh
Q 010031 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106 (520)
Q Consensus 27 ~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 106 (520)
|..+...++..+...|.++.|..++..+. -+..++..+.+.++++.|.+++... .+..+|..+...+.+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVD 81 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHh
Confidence 44444444555555555555555554321 1234445555555555555555433 233455555555555
Q ss_pred CCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010031 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177 (520)
Q Consensus 107 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (520)
.....-| .+.......+......++..|-..|.+++...+++..... -..+...++-++..|++.
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 4443222 1111122223333344555555555555555555544321 123344445555555443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.15 E-value=9.3e-07 Score=75.09 Aligned_cols=139 Identities=9% Similarity=-0.020 Sum_probs=101.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-hhHHHHHHHHHhccCChH
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQVD 450 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 450 (520)
.+.|++++|+..+++.++. .|+ ...+..+...++..|++++|.+.++...+. .|+ ...+..+..++...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 4579999999999999994 564 459999999999999999999999999853 455 345555666655555555
Q ss_pred HHHHHHhhCC--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 451 KALNFINKMP--ETPD-FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 451 ~A~~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
++..-..... .+|+ ...+......+...|+.++|...++++.+..|+.+..+...+......+|.+
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~~~f~wi~D~D~R 150 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSDVRDIDDR 150 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETTEEESCEEESSTT
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccccCHHHHhccchh
Confidence 5443332211 1232 3344445566888999999999999999999999998877666655555544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=0.0019 Score=55.99 Aligned_cols=135 Identities=13% Similarity=0.074 Sum_probs=57.9
Q ss_pred CChHHHHHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHh
Q 010031 61 ASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140 (520)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 140 (520)
|+..-...+.+.|-+.|.++.|..+|..+.. |..++..+.+.+++..|.+.+.+. -+..+|..+...|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHH
Confidence 3444444455555566666666666654433 555555556666666665555433 13335555555555
Q ss_pred ccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhc
Q 010031 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212 (520)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 212 (520)
+......+ .+.......++.....++..|-..|.+++...+++...... ..+...++.++..|++.
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 146 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHh
Confidence 44333221 11112222333444455555556666666666555443321 33444555555555554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=8.8e-07 Score=66.28 Aligned_cols=93 Identities=10% Similarity=0.031 Sum_probs=52.2
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHH
Q 010031 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRT 477 (520)
Q Consensus 400 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 477 (520)
+..+...+...|++++|++.|.+..+.. +.+...+..+..+|.+.|++++|+..++++.. +.+...|..+..++.+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3344555666666666666666665421 23345555666666666666666666666543 2233445555556666
Q ss_pred cCCHHHHHHHHHHHhcC
Q 010031 478 HKDTKIAKIALQSSCSL 494 (520)
Q Consensus 478 ~g~~~~A~~~~~~~~~~ 494 (520)
.|+...+...++++++.
T Consensus 85 lg~~~~~~~~~~~A~~~ 101 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHF 101 (128)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 66666666666666554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=3.7e-07 Score=86.34 Aligned_cols=135 Identities=10% Similarity=0.017 Sum_probs=78.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHH
Q 010031 375 HGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKAL 453 (520)
Q Consensus 375 ~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (520)
.+.++.++..++...+ +.|+. ..+..+...+.+.|+.+.|...++..... .| ...+..++..+...|++++|+
T Consensus 99 ~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~ 172 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAE 172 (497)
T ss_dssp HHHHHHHHHHHTC---------------------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHH
Confidence 3445555555544433 34433 36666667777888888888777665431 11 246677888888889999999
Q ss_pred HHHhhCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCC
Q 010031 454 NFINKMPE-TP-DFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDG 515 (520)
Q Consensus 454 ~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 515 (520)
..++++.. .| +...|+.++..+...|+..+|+..|.+++...|..+.++..|+.++.+....
T Consensus 173 ~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~ 236 (497)
T d1ya0a1 173 SYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALES 236 (497)
T ss_dssp HHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhh
Confidence 98888665 34 4678888888888899999999999999999888899999888888766543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=1.8e-05 Score=58.91 Aligned_cols=94 Identities=12% Similarity=0.047 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCC-----hhHHH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHT 437 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 437 (520)
.+..++..+...|++++|+..|++.++. .| +...+..+..+|.+.|++++|++.++++.+-..-.+. ..+|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4556788999999999999999999995 55 4668999999999999999999999998752211111 12444
Q ss_pred HHHHHHhccCChHHHHHHHhhC
Q 010031 438 VVVNLLSRVGQVDKALNFINKM 459 (520)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~ 459 (520)
.+...+...+++++|++.+++.
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 5555555666666666666553
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=3.7e-05 Score=60.38 Aligned_cols=108 Identities=14% Similarity=-0.019 Sum_probs=65.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CC-------------CHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCCh
Q 010031 368 MIWGLAIHGRYEQAIQYFKKMMYSGT-EP-------------DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433 (520)
Q Consensus 368 l~~~~~~~~~~~~a~~~~~~~~~~~~-~p-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 433 (520)
.+..+.+.|++++|+..|++.+..-. .+ ...+|..+..+|.+.|++++|+..++...... |.++
T Consensus 19 ~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~--p~~~ 96 (170)
T d1p5qa1 19 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--SNNE 96 (170)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc--ccch
Confidence 34445555555555555555544200 00 01345666677778888888888888877532 3356
Q ss_pred hHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHHH
Q 010031 434 KHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACRT 477 (520)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~ 477 (520)
..+..++.+|...|++++|+..|+++.. .| +......+..+..+
T Consensus 97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 97 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 6777788888888888888888887654 34 44444444444333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.05 E-value=2.4e-06 Score=65.28 Aligned_cols=33 Identities=6% Similarity=-0.009 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 480 DTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 480 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
++++|.+.|+++++++|+++.++..++......
T Consensus 101 ~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~ 133 (145)
T d1zu2a1 101 NFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 133 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred hHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence 468899999999999999999998888776543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=3.3e-06 Score=62.10 Aligned_cols=96 Identities=8% Similarity=0.032 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC---cHHHHHHHHHHcHhhcCCCCC---hhHHHH
Q 010031 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSG---QVKLALNFFDSMRFDYFIEPS---VKHHTV 438 (520)
Q Consensus 366 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~---~~~~~~ 438 (520)
..++..+...+++++|++.|++.... .| +..++..+..++.+.+ ++++|+.+++++.. . .|+ ..++..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~-~--~~~~~~~~~~~~ 77 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-K--GSKEEQRDYVFY 77 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-T--SCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh-c--cCCchHHHHHHH
Confidence 34667777888889999999888884 44 4457777888877644 55678888888764 2 233 236777
Q ss_pred HHHHHhccCChHHHHHHHhhCCC-CCCHH
Q 010031 439 VVNLLSRVGQVDKALNFINKMPE-TPDFV 466 (520)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 466 (520)
++.+|.+.|++++|++.|+++.. .|+..
T Consensus 78 Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~ 106 (122)
T d1nzna_ 78 LAVGNYRLKEYEKALKYVRGLLQTEPQNN 106 (122)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhCcCCH
Confidence 88888899999999999988765 55543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=4.2e-07 Score=85.95 Aligned_cols=136 Identities=13% Similarity=-0.006 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCcHHHHHHHHHHcHhhcCCCC-ChhHHHHHHHHHhccCChHHHHH
Q 010031 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTA--CWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQVDKALN 454 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 454 (520)
+..+.+.++...+....++..-....+.. ....+.++.++..++... ++.| +...+..+...+.+.|+.++|..
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~ 141 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVK 141 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHH
Confidence 44566667766654434443322221111 223456666666655543 2334 45677888889999999999988
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccCCC
Q 010031 455 FINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGDGR 516 (520)
Q Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 516 (520)
.+++........++..++..+...|++++|+..|+++++++|+++.++..+|.++...|+..
T Consensus 142 ~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~ 203 (497)
T d1ya0a1 142 PQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHL 203 (497)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHH
Confidence 77665431123467788889999999999999999999999999999999999999998843
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.93 E-value=1.6e-05 Score=61.65 Aligned_cols=97 Identities=12% Similarity=-0.039 Sum_probs=64.4
Q ss_pred HHHccCcHHHHHHHHHHcHhhcCCCCC----------hhHHHHHHHHHhccCChHHHHHHHhhCCC--------CCC---
Q 010031 406 ACWYSGQVKLALNFFDSMRFDYFIEPS----------VKHHTVVVNLLSRVGQVDKALNFINKMPE--------TPD--- 464 (520)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~--- 464 (520)
.+...|++++|++.|++..+-..-.|+ ...|+.+..+|.+.|++++|.+.+++... .++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344556666666666666542221221 24566777778888888877777766432 121
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchh
Q 010031 465 --FVIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAM 502 (520)
Q Consensus 465 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 502 (520)
...+..+..+|...|++++|+..|++++++.|+.....
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~ 137 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 137 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchH
Confidence 12466778889999999999999999999877655543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.84 E-value=0.0001 Score=57.59 Aligned_cols=97 Identities=11% Similarity=-0.000 Sum_probs=65.9
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHHHHHHHhhCCC-CC-CHHHHHHHHHHHH
Q 010031 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDKALNFINKMPE-TP-DFVIWGALFCACR 476 (520)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~ 476 (520)
+|..+..+|.+.|++++|+..++...... +.+...|..++.+|...|++++|++.|+++.. .| +......+.....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45566777888888888888888887532 45567888888888888999999888888654 33 4555555555544
Q ss_pred HcCCH-HHHHHHHHHHhcCCCC
Q 010031 477 THKDT-KIAKIALQSSCSLNLS 497 (520)
Q Consensus 477 ~~g~~-~~A~~~~~~~~~~~p~ 497 (520)
..+.. +...+.+.++++..++
T Consensus 144 ~~~~~~e~~kk~~~~~f~~~~~ 165 (168)
T d1kt1a1 144 KAKEHNERDRRTYANMFKKFAE 165 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHHHhhhhh
Confidence 44433 3456666666654433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.77 E-value=0.00019 Score=55.05 Aligned_cols=90 Identities=14% Similarity=0.082 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC--------CC-----------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 010031 333 IGTALVDMYAKCGNIEAASLVFGETKE--------KD-----------LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393 (520)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 393 (520)
.+..-...+.+.|++++|...|.+... ++ ..+|+.+..+|.+.|++++|+..+++.++ +
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~--~ 96 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK--I 96 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc--c
Confidence 445567788899999999999886543 01 11333344444455555555555555444 2
Q ss_pred CC-CHHHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 394 EP-DGTVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 394 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
.| +..+|..+..++...|++++|+..|++..
T Consensus 97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al 128 (153)
T d2fbna1 97 DKNNVKALYKLGVANMYFGFLEEAKENLYKAA 128 (153)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence 23 22344444445555555555555555444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.72 E-value=0.00012 Score=57.36 Aligned_cols=59 Identities=7% Similarity=-0.049 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcH
Q 010031 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMR 424 (520)
Q Consensus 364 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 424 (520)
.|..+..++.+.|++++|+..++++++ +.|+. .+|..+..++...|++++|++.|+++.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al 138 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 138 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhh--hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence 344445555555555555555555554 23332 255555555555555555555555554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.53 E-value=1.5e-05 Score=60.74 Aligned_cols=36 Identities=6% Similarity=-0.107 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhccC
Q 010031 479 KDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQKGD 514 (520)
Q Consensus 479 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 514 (520)
+.+++|+..++++++++|+++.++..+|.+|...|.
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~ 90 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 90 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHccc
Confidence 456789999999999999999999999999988764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.48 E-value=0.00077 Score=52.86 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=78.8
Q ss_pred HHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 010031 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383 (520)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 383 (520)
......|+++.|.+.|...+.....+-.. .....+.+...-..+.......+..++.++...|++++|+.
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~----------~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~ 88 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLD----------DLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 88 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTG----------GGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccc----------cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 45667788888888888877642111000 00000000000001111123467778888999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcHh----hcCCCCChhHH
Q 010031 384 YFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRF----DYFIEPSVKHH 436 (520)
Q Consensus 384 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 436 (520)
.++++.+ ..| +...|..++.++...|+..+|++.|+++.. ..|+.|+..+-
T Consensus 89 ~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 89 ELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 9999988 455 455899999999999999999999988743 46888887653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.35 E-value=0.00099 Score=52.22 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=75.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHh
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (520)
...........|++++|...|.+.... .+.... ......+.+...-..+.. .....+..++.++.
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l--------~~~~~~~w~~~~r~~l~~-----~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALRE--WRGPVL--------DDLRDFQFVEPFATALVE-----DKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSSTT--------GGGTTSTTHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--Cccccc--------ccCcchHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 334455677889999999999998873 222110 000000011111111111 11245667888888
Q ss_pred ccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------hcCCCC
Q 010031 445 RVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSS-------CSLNLS 497 (520)
Q Consensus 445 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~p~ 497 (520)
+.|++++|+..++++.. +-+...|..++.++...|+.++|++.|+++ +.+.|.
T Consensus 79 ~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 88888888888888765 446778888888888888888888888887 446664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.21 E-value=0.00085 Score=51.39 Aligned_cols=97 Identities=14% Similarity=0.116 Sum_probs=70.0
Q ss_pred HHHHH--HHHHHHcCCHHHHHHHHHHHHHCCC-CCC----------HHHHHHHHHHHHccCcHHHHHHHHHHcHhhc---
Q 010031 364 TWTAM--IWGLAIHGRYEQAIQYFKKMMYSGT-EPD----------GTVFLAILTACWYSGQVKLALNFFDSMRFDY--- 427 (520)
Q Consensus 364 ~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--- 427 (520)
+|..+ +..+...|++++|+..|++.++... .|+ ...|+.+..+|...|++++|.+.+++...-.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 4456677899999999998876211 111 3478888889999999999999988876421
Q ss_pred -CCCCC-----hhHHHHHHHHHhccCChHHHHHHHhhCC
Q 010031 428 -FIEPS-----VKHHTVVVNLLSRVGQVDKALNFINKMP 460 (520)
Q Consensus 428 -~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (520)
...++ ...++.+..+|...|++++|++.|++..
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 2356778999999999999999998865
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.03 E-value=0.00069 Score=56.90 Aligned_cols=122 Identities=7% Similarity=-0.114 Sum_probs=71.2
Q ss_pred HHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHH
Q 010031 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183 (520)
Q Consensus 104 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 183 (520)
..+.|++++|+..|++.++.. +-|...+..+...++..|++++|...++...+... .+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P-~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP-EYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhccccHHH
Confidence 456688888888888887743 13445777777888888888888888888877542 2333444444444444444443
Q ss_pred HHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCCC
Q 010031 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227 (520)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 227 (520)
..-.......+-+++...+......+...|+.++|...++++.+
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 33222211122122233333445556677788877777766543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.92 E-value=0.0024 Score=45.41 Aligned_cols=82 Identities=7% Similarity=-0.023 Sum_probs=63.1
Q ss_pred CCChhHHHHHHHHHhccC---ChHHHHHHHhhCCC-CC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhH
Q 010031 430 EPSVKHHTVVVNLLSRVG---QVDKALNFINKMPE-TP-DF-VIWGALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMS 503 (520)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 503 (520)
.|+..+--..++++.+.. +.++++.+++++.. .| +. ..+..+.-+|.+.|++++|...++++++++|++..+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 355566667777787664 45688888888654 34 33 57778888899999999999999999999999999987
Q ss_pred HHHhhhhh
Q 010031 504 YCQTFMQQ 511 (520)
Q Consensus 504 ~l~~~~~~ 511 (520)
....+-.+
T Consensus 112 L~~~Ie~~ 119 (124)
T d2pqrb1 112 LKSMVEDK 119 (124)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.18 Score=45.61 Aligned_cols=272 Identities=11% Similarity=-0.032 Sum_probs=157.8
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHh--CC
Q 010031 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ--NG 275 (520)
Q Consensus 198 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~~ 275 (520)
+...+-.-+......|+...|..+...+...........+........+.. ...... .+......+..++.+ ..
T Consensus 153 t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~---~~~~~~-~~~~~~~~~~~~l~rla~~ 228 (450)
T d1qsaa1 153 DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLT---FARTTG-ATDFTRQMAAVAFASVARQ 228 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHH---HHHHSC-CCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHH---HHhcCC-CChhhhHHHHHHHHHHhcc
Confidence 344444455556667778888887776665454555555555443333332 222222 222222222222222 35
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHH----HHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 010031 276 EAEKALAMFFQMLDAGVRANDFTVVS----ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351 (520)
Q Consensus 276 ~~~~a~~~~~~m~~~~~~p~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 351 (520)
+.+.+..++........ .+...... +.......+..+.+...+......+ .+.......+......+++..+.
T Consensus 229 d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~ 305 (450)
T d1qsaa1 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (450)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred ChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHH
Confidence 77888888888766532 22222222 2223345566777877777766554 34444444555566778999999
Q ss_pred HHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcC
Q 010031 352 LVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428 (520)
Q Consensus 352 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 428 (520)
..+..+... ...-..-+..++...|+.+.|...|..+.. .++ .|..|.. .+.|..- .+. ...
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa--~~Lg~~~-------~~~-~~~ 370 (450)
T d1qsaa1 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAA--QRIGEEY-------ELK-IDK 370 (450)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHH--HHTTCCC-------CCC-CCC
T ss_pred HHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHH--HHcCCCC-------CCC-cCC
Confidence 999988752 223345567888899999999999998864 344 3333322 1222110 000 000
Q ss_pred CCCC-hhHH-----HHHHHHHhccCChHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010031 429 IEPS-VKHH-----TVVVNLLSRVGQVDKALNFINKMPETPDFVIWGALFCACRTHKDTKIAKIALQSS 491 (520)
Q Consensus 429 ~~~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 491 (520)
.+++ ...+ ..-+..+...|+...|...+..+....+......+.....+.|.++.|+....++
T Consensus 371 ~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 0111 0111 1235667788999999998887665556677777778888999999999888776
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.021 Score=38.77 Aligned_cols=61 Identities=11% Similarity=0.016 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcHh
Q 010031 365 WTAMIWGLAIHGRYEQAIQYFKKMMYS-----GTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRF 425 (520)
Q Consensus 365 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 425 (520)
+..++..+.+.|++++|+..|++..+. ...++ ..++..+..++.+.|++++|+..++++.+
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 334566666777777777777666542 11222 23566666677777777777777777664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.95 E-value=0.051 Score=39.55 Aligned_cols=112 Identities=15% Similarity=0.053 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhc----cCChHH
Q 010031 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR----VGQVDK 451 (520)
Q Consensus 376 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 451 (520)
.|+++|.++|++..+.|- |. ....|. .....+.++|.+++++..+ .| ++.....|...|.. ..+.++
T Consensus 7 kd~~~A~~~~~kaa~~g~-~~--a~~~l~--~~~~~~~~~a~~~~~~aa~-~g---~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNE-MF--GCLSLV--SNSQINKQKLFQYLSKACE-LN---SGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHTTC-TT--HHHHHH--TCTTSCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCCC-hh--hhhhhc--cccccCHHHHHHHHhhhhc-cc---chhhhhhHHHhhhhccccchhhHH
Confidence 467889999999888763 22 222222 2345688899999988874 33 34445556666653 456889
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCC
Q 010031 452 ALNFINKMPETPDFVIWGALFCACRT----HKDTKIAKIALQSSCSLNL 496 (520)
Q Consensus 452 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 496 (520)
|.++|++....-++.....|...|.. ..|.++|...++++.+...
T Consensus 78 A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 78 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 99999987665667777777776665 5689999999999887643
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.56 E-value=0.13 Score=37.25 Aligned_cols=46 Identities=7% Similarity=-0.032 Sum_probs=24.2
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcC
Q 010031 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326 (520)
Q Consensus 276 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 326 (520)
++++|+.+|++..+.|.. . ....+. .....+.++|...+++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g~~-~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-F--GCLSLV--SNSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HHHHHH--TCTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCCh-h--hhhhhc--cccccCHHHHHHHHhhhhccc
Confidence 456777777777666522 1 111221 233345666666666665554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.34 E-value=0.91 Score=40.68 Aligned_cols=351 Identities=7% Similarity=-0.042 Sum_probs=205.0
Q ss_pred HHHHHHHhcCCChHHHHHHhcccCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChh
Q 010031 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146 (520)
Q Consensus 67 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 146 (520)
...+..+.+.+++...+..+...+ .+...--....+....|+...|...+..+-..|. . ..+
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~----------------~p~ 137 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-S----------------QPN 137 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-C----------------CCT
T ss_pred HHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-C----------------Cch
Confidence 444666778888888777665422 2344334566777888888888887776655442 1 122
Q ss_pred hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHhhCC
Q 010031 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226 (520)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 226 (520)
.+..++..+.+.|. .+...+-.-+......|+...|..++..+... ........+.... +...+........
T Consensus 138 ~c~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~---~p~~~~~~~~~~~ 209 (450)
T d1qsaa1 138 ACDKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLAN---NPNTVLTFARTTG 209 (450)
T ss_dssp HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHH---CGGGHHHHHHHSC
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHh---ChHhHHHHHhcCC
Confidence 33334444444443 44444445566677789999999998765432 2223333333332 2333333333332
Q ss_pred CCCHHHHHHHHHHHHh--cCCHHHHHHHHhcCCCCC---cc----cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 010031 227 KKNVASWVSLIDGFMR--KGDLKKAGELFEQMPEKG---VV----SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297 (520)
Q Consensus 227 ~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~---~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 297 (520)
.+......+..++.+ ..+.+.|...+....... .. ....+...+...+..+.+...+......+ .+..
T Consensus 210 -~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~ 286 (450)
T d1qsaa1 210 -ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTS 286 (450)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHH
T ss_pred -CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchH
Confidence 233333333333333 357888888887754322 11 12223333445677788888887776653 3444
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC
Q 010031 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377 (520)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 377 (520)
.....+......++...+...+..+.... .....-.--+..++...|+.+.|...|..+.... +|...+.+- +.|.
T Consensus 287 ~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~--~fYG~LAa~-~Lg~ 362 (450)
T d1qsaa1 287 LIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQR--GFYPMVAAQ-RIGE 362 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCC--ChHHHHHHH-HcCC
Confidence 44555556667789999998888764321 1223333457788999999999999999877642 344443332 2222
Q ss_pred HHHHHHHHHHHHHCCC--CCC-HH---HHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHHHHhccCChHH
Q 010031 378 YEQAIQYFKKMMYSGT--EPD-GT---VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQVDK 451 (520)
Q Consensus 378 ~~~a~~~~~~~~~~~~--~p~-~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 451 (520)
.-. +....+ .+. .. .-..-+..+...|....|...+..+.. ..+......+.....+.|.++.
T Consensus 363 ~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~----~~~~~~~~~la~lA~~~g~~~~ 431 (450)
T d1qsaa1 363 EYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK----SKSKTEQAQLARYAFNNQWWDL 431 (450)
T ss_dssp CCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTCHHH
T ss_pred CCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCChhH
Confidence 100 000000 000 00 111234556788999999999988874 2345566678888899999999
Q ss_pred HHHHHhhCCC
Q 010031 452 ALNFINKMPE 461 (520)
Q Consensus 452 A~~~~~~~~~ 461 (520)
|+....+...
T Consensus 432 aI~a~~~~~~ 441 (450)
T d1qsaa1 432 SVQATIAGKL 441 (450)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHc
Confidence 9999888764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.98 E-value=0.93 Score=31.53 Aligned_cols=119 Identities=14% Similarity=0.158 Sum_probs=76.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCC----------------CChhHH
Q 010031 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE----------------PSVKHH 436 (520)
Q Consensus 373 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------------~~~~~~ 436 (520)
...|..++..+++.+.... .+..-|+.++--....-+-+-..+.++.+-.-+.+. .+...+
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~v 89 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHV 89 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHH
Confidence 4456667777776666552 233344444444444444455555555543322222 223344
Q ss_pred HHHHHHHhccCChHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 010031 437 TVVVNLLSRVGQVDKALNFINKMPE--TPDFVIWGALFCACRTHKDTKIAKIALQSSCSL 494 (520)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 494 (520)
+.-+..+..+|+-+.-.++.+.+.. ++++.....+..+|.+-|+..++-+++.++.+.
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 5566777788888888888777443 688888889999999999999999999988764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.60 E-value=1.1 Score=31.24 Aligned_cols=139 Identities=12% Similarity=0.044 Sum_probs=84.1
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHH
Q 010031 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMYAKCGNIEA 349 (520)
Q Consensus 271 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 349 (520)
+.-.|..++..+++.+...+ .+..-|+.++--....-+-+...+.++.+-+. +..++ .-...++.++...+
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDls~C~Nlk~vv~C~~~~n---- 83 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLDKCQNLKSVVECGVINN---- 83 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGGGCSCTHHHHHHHHHTT----
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-cCchhhhcHHHHHHHHHHhc----
Confidence 45567777777777777654 24445555555555555555556665554321 11110 01123344444333
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCC
Q 010031 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429 (520)
Q Consensus 350 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 429 (520)
.+.......+..+..+|+-++-.++++.+.+. -+|++.....+..+|-+.|+..++.+++.++-+ .|+
T Consensus 84 ----------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe-~G~ 151 (161)
T d1wy6a1 84 ----------TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK-KGE 151 (161)
T ss_dssp ----------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTC
T ss_pred ----------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-HhH
Confidence 23334555667778888888888888886663 467778888888888888888888888888763 443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.88 E-value=1.1 Score=31.27 Aligned_cols=71 Identities=8% Similarity=0.024 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHcc---CcHHHHHHHHHHcHhhcCCCCCh-hHHHHHHHHHhccCChHHHHHHHhhCCC-CCCHH
Q 010031 394 EPDGTVFLAILTACWYS---GQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQVDKALNFINKMPE-TPDFV 466 (520)
Q Consensus 394 ~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 466 (520)
.|...|--....++.++ .+.++++.+++.+.+.. +.+. ..+-.|.-+|.+.|++++|.+.++.+.. .|+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~--p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 34555555555666544 45667888888776421 2232 4555677778888888888888887665 45443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.55 E-value=1.7 Score=28.58 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcHhhcCCCCChhHHHHHHH
Q 010031 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (520)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 441 (520)
+.-+..+-++.+....+-|++......+++|.+.+++..|.++++.++.+.+ ++..+|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4445666677777777889999999999999999999999999999876543 34556666553
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.01 E-value=3.1 Score=27.24 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 010031 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339 (520)
Q Consensus 278 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (520)
=++.+-+..+....+.|++......+.+|.+.+++..|.++++.+..+- .++...|..+++
T Consensus 23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 3455556666666788999999999999999999999999998876543 234556665554
|
| >d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Telomeric repeat binding factor (TRF) dimerisation domain superfamily: Telomeric repeat binding factor (TRF) dimerisation domain family: Telomeric repeat binding factor (TRF) dimerisation domain domain: TRF1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.02 E-value=4.1 Score=30.51 Aligned_cols=64 Identities=16% Similarity=0.069 Sum_probs=40.5
Q ss_pred hHHHHHHHhhCCCCCCHH--HHH-----HHHHHHHHcCCHHHHHHHHHHHhcCCCCCcchhHHHHhhhhhc
Q 010031 449 VDKALNFINKMPETPDFV--IWG-----ALFCACRTHKDTKIAKIALQSSCSLNLSIPQAMSYCQTFMQQK 512 (520)
Q Consensus 449 ~~~A~~~~~~~~~~~~~~--~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 512 (520)
++.|+.+|+.+...++.. ... ..+..|.+.|.+++|.+++++..+-.+.+...-..|..+..++
T Consensus 90 LESAl~v~~~I~~E~d~l~e~i~~lik~qAV~vCmekg~fk~A~eilkr~f~~~~~~~~lr~~L~~iI~~K 160 (204)
T d3bqoa1 90 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQK 160 (204)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Confidence 567888888887755542 122 2334588999999999999998776665555666666665554
|