Citrus Sinensis ID: 010045

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
Protein Sequence
MDEYLDHYFSSSSWSDVNAKERSSWDYSEPLQQNQLLPNSIGVYKDDEKNSPVGIAMEGLAAQDTSSFVLGEESEYGIDKNLLSEETQYEKDGQNCNGNLSSMNRSLKLGNVGLQYDPAIPTLGSMNLGSPKQLPLIGEMTTSPSFVDSEHVGGNSSELSDIQRSLRDLQTISPSPELWLPTSYEEVSSLSSVIEQPRTRGFYLQGATMNHDVDTTGNRYVGMDKILQFDYLSASIVAKGEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAISSGKASSSDTISEENKFCFSNGLVQSNSSSASSNSSLPNNGINQMPLNTNIIIGKPIGESILVNGCNRAVKEERNSQCTARELKPKT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccccccccccccccccccccccccccccccEEEEccccccccEEEEEEcccccccccEEEccccccccccccHHHHHHHccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccHHccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEccccHHHHHHccccccHHHccccc
Coil and Loop (DISEMBL)
mdeyldhyfsssswsdvnakersswdyseplqqnqllpnsigvykddeknspvgiameglaaqdtssfvlgeeseygidknllSEETqyekdgqncngnlsSMNRslklgnvglqydpaiptlgsmnlgspkqlpligemttspsfvdsehvggnsseLSDIQRSLRDlqtispspelwlptsyeEVSSLssvieqprtrgfylqgatmnhdvdttgnryvgmDKILQFDYLSASIVakgeqelpnhplscfssrplptvptvglpslqqtasanptggcngtgkarvrarrgqatdphSIAERLRREKIAERMKNLQelvpnsnktdkasMLDEIIDYVKFLQLQVKVLSMSRlgaagavlplitdgqaeaskglslspqadqgvdislnsDQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAIssgkasssdtiseenkfcfsnglvqsnsssassnsslpnnginqmplntniiigkpigesilvnGCNRAVKeernsqctarelkpkt
Flexible Loop (DISEMBL)
mdeyldhyfsssswsdvnAKERSSWDYSEPLQQNQLLPNSIGVYKDDEKNSPVGIAMEGLAAQDTSSFVLGEESEYGIDKNLLSEETQYEKDGQNCNGNLSSMNRSLKLGNVGLQYDPAIPTLGSMNLGSPKQLPLIGEMTTSPSFVDSEHVGGNSSELSDIQRSLRDLQTISPSPELWLPTSYEEVSSLSSVIEQPRTRGFYLQGATMNHDVDTTGNRYVGMDKILQFDYLSASIVAKGEQELPNHPLSCFSSRPLPTVPTVGLPSLQqtasanptggcngtgkarvrarrgqatdphsiaerlRREKIAERMKnlqelvpnsnktdkASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAISSGKASSSDTISEENKFCFSNGLVQSNSSSASSNSSLPNNGINQMPLNTNIIIGKPIGESILVNGCNRAVkeernsqctarelkpkt
Low Complexity Region (SEG)
MDEYLDHYFSSSSWSDVNAKERSSWDYSEPLQQNQLLPNSIGVYKDDEKNSPVGIAMEGLAAQDTSSFVLGEESEYGIDKNLLSEETQYEKDGQNCNGNLSSMNRSLKLGNVGLQYDPAIPTLGSMNLGSPKQLPLIGEMTTSPSFVDSEHVGGNSSELSDIQRSLRDLQTISPSPELWLPTSYEEVSSLSSVIEQPRTRGFYLQGATMNHDVDTTGNRYVGMDKILQFDYLSASIVAKGEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAISSGKASSSDTISEENKFCFsnglvqsnsssassnsslpnnGINQMPLNTNIIIGKPIGESILVNGCNRAVKEERNSQCTARELKPKT
Disordered region (IsUnstruct)
*************************************************************************************************************GNVGLQYDPAI**********************************************************WLP***********VIEQPRTRGFYLQGATMNHDVDTTGNRYVGMDKILQFDYLSASIVAKG*******************************************************************************************MLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITD*************************DQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAI*********************************************PLNTNIIIGKPIGESILVNGCNRA******************
Disordered Region (DISOPRED)
**EYLDHYFS*********************************************************************************************************************************************************************************************************************************************************************************************************EKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKV******************************************************************LQNKGLCLMPIALATAI***************************************************************************************
Disordered Region (DISEMBL)
***************************SEPLQQNQLLPNSIGVYKDDEKNSPVGIAMEGLAAQDTSSFVLGEESEYGIDKNLLSEETQYEKDGQNCNGNLSSMNRSLKLGNVGLQYDPAIPTLGSMNLGSPKQLPLIGEMTTSPSFVD**************QRSLRDLQTISPSPELWLPTS**********IEQPRTRGFYLQGATMNHDVDTTGNRYVGMDKILQFDYLSASIVAKGEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTA**************************HSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAI***********SEENKFCFSNGLV************LPNNGINQMPLNTNIIIGKPIGESILVNGCNRAVK****************
Disordered Region (DISPRO)
********FS**************WDYSEPLQQNQLLPNSIGVYKDDEKNSPVGIAMEGLAAQDTSSFVLGEESEYGIDKNLLSEETQYEKDGQNCNGNLSSMNRSLKLGNVGLQYDPAIPTLGSMNLGSPKQLPLIGEMTTSPSFVDSEH*GGNSSELSDIQRSLRDLQTISPSPELWLPTSYEEVSSLSSVIEQPRTRGFYLQGATMNHDVDTTGNRYVGMDKILQFDYL****************************************************KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDG**************************IAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAISSGKASSSDT*******************************INQMPLNTNIIIGKPIGESILVNGCNRAVKEERNSQCTAREL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEYLDHYFSSSSWSDVNAKERSSWDYSEPLQQNQLLPNSIGVYKDDEKNSPVGIAMEGLAAQDTSSFVLGEESEYGIDKNLLSEETQYEKDGQNCNGNLSSMNRSLKLGNVGLQYDPAIPTLGSMNLGSPKQLPLIGEMTTSPSFVDSEHVGGNSSELSDIQRSLRDLQTISPSPELWLPTSYEEVSSLSSVIEQPRTRGFYLQGATMNHDVDTTGNRYVGMDKILQFDYLSASIVAKGEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAISSGKASSSDTISEENKFCFSNGLVQSNSSSASSNSSLPNNGINQMPLNTNIIIGKPIGESILVNGCNRAVKEERNSQCTARELKPKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	519	2.2.26 [Sep-21-2011]
Q9LSQ3	297	Transcription factor bHLH	yes	no	0.337	0.589	0.569	5e-49
Q8S3D5	310	Transcription factor bHLH	no	no	0.304	0.509	0.612	1e-47
Q9ZUG9	350	Transcription factor bHLH	no	no	0.294	0.437	0.641	2e-47
O22768	310	Transcription factor UNE1	no	no	0.298	0.5	0.569	7e-39
Q93Y00	302	Transcription factor bHLH	no	no	0.292	0.503	0.603	2e-38
Q9SRT2	456	Transcription factor bHLH	no	no	0.236	0.269	0.471	4e-19
Q8GY61	335	Transcription factor bHLH	no	no	0.134	0.208	0.690	4e-19
Q9CAA9	486	Transcription factor bHLH	no	no	0.132	0.141	0.7	4e-19
Q9FJL4	498	Transcription factor bHLH	no	no	0.127	0.132	0.731	5e-19
Q9C670	390	Transcription factor bHLH	no	no	0.150	0.2	0.625	9e-19

>sp|Q9LSQ3|BH082_ARATH Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1

 Score =  196 bits (497), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 111/195 (56%), Positives = 131/195 (67%), Gaps = 20/195 (10%)

Query: 255 RPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERM 314
           +P  TV T   P ++Q              K RVRARRGQATDPHSIAERLRRE+IAERM
Sbjct: 80  QPQGTVSTTSAPVVRQ--------------KPRVRARRGQATDPHSIAERLRRERIAERM 125

Query: 315 KNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASK 374
           K+LQELVPN+NKTDKASMLDEII+YV+FLQLQVKVLSMSRLG AG+V P +    AEA  
Sbjct: 126 KSLQELVPNTNKTDKASMLDEIIEYVRFLQLQVKVLSMSRLGGAGSVGPRLNGLSAEAGG 185

Query: 375 GLSLSPQADQGVD------ISLNSDQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIAL 428
            L+       G++       S N    + E+ V KLME ++  AMQYLQ KGLCLMPI+L
Sbjct: 186 RLNALTAPCNGLNGNGNATGSSNESLRSTEQRVAKLMEEDMGSAMQYLQGKGLCLMPISL 245

Query: 429 ATAISSGKASSSDTI 443
           ATAISS    S  ++
Sbjct: 246 ATAISSSTTHSRGSL 260

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2

 Score =  191 bits (485), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 106/173 (61%), Positives = 120/173 (69%), Gaps = 15/173 (8%)

Query: 269 QQTASANPTGGCNGT--GKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK 326
           Q TASA  TGG       K +VRARRGQATDPHSIAERLRRE+IAERMK+LQELVPN NK
Sbjct: 110 QATASAT-TGGATAQPQTKPKVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK 168

Query: 327 TDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGV 386
           TDKASMLDEIIDYVKFLQLQVKVLSMSRLG A +    I++    + +  S S +A    
Sbjct: 169 TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAASASSQISEDAGGSHENTSSSGEAKM-- 226

Query: 387 DISLNSDQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAISSGKASS 439
                      E +V KLME ++  AMQYLQ KGLCLMPI+LAT IS+    S
Sbjct: 227 ----------TEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATTISTATCPS 269

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1

 Score =  191 bits (484), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 116/156 (74%), Gaps = 3/156 (1%)

Query: 285 KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQ 344
           + ++RARRGQATDPHSIAERLRRE+IAERMK LQELVPN NKTDKASMLDEIIDYVKFLQ
Sbjct: 135 RTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQ 194

Query: 345 LQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAF-EEEVVK 403
           LQVKVLSMSRLG A +V   I+  +A  S G + S           ++D +   E +V K
Sbjct: 195 LQVKVLSMSRLGGAASVSSQIS--EAGGSHGNASSAMVGGSQTAGNSNDSVTMTEHQVAK 252

Query: 404 LMESNVTKAMQYLQNKGLCLMPIALATAISSGKASS 439
           LME ++  AMQYLQ KGLCLMPI+LATAIS+    S
Sbjct: 253 LMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHS 288

Arabidopsis thaliana (taxid: 3702)

>sp|O22768|UNE12_ARATH Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2 SV=2

 Score =  162 bits (409), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 98/172 (56%), Positives = 119/172 (69%), Gaps = 17/172 (9%)

Query: 285 KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQ 344
           + RVRARRGQATDPHSIAERLRRE+IAER++ LQELVP  NKTD+A+M+DEI+DYVKFL+
Sbjct: 143 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLR 202

Query: 345 LQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAFEE----- 399
           LQVKVLSMSRLG AGAV PL+TD        + LS   +        + Q A+E+     
Sbjct: 203 LQVKVLSMSRLGGAGAVAPLVTD--------MPLSSSVEDETGEGGRTPQPAWEKWSNDG 254

Query: 400 ---EVVKLMESNVTKAMQYLQNKGLCLMPIALATAI-SSGKASSSDTISEEN 447
              +V KLME NV  AMQ LQ+K LC+MPI+LA AI  S    +S  +  EN
Sbjct: 255 TERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAIYHSQPPDTSSVVKPEN 306

Required for ovule fertilization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Y00|BH007_ARATH Transcription factor bHLH7 OS=Arabidopsis thaliana GN=BHLH7 PE=2 SV=1

 Score =  160 bits (405), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/159 (60%), Positives = 115/159 (72%), Gaps = 7/159 (4%)

Query: 274 ANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASML 333
           A P      T + RVRARRGQATDPHSIAERLRRE+IAER+++LQELVP  NKTD+A+M+
Sbjct: 130 APPMPHQQSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMI 189

Query: 334 DEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSD 393
           DEI+DYVKFL+LQVKVLSMSRLG AGAV PL+T+    +S          Q V    ++D
Sbjct: 190 DEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTEMPLSSSVE-----DETQAVWEKWSND 244

Query: 394 QIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAI 432
               E +V KLME NV  AMQ LQ+K LC+MPI+LA AI
Sbjct: 245 --GTERQVAKLMEENVGAAMQLLQSKALCIMPISLAMAI 281

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 85/140 (60%), Gaps = 17/140 (12%)

Query: 287 RVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKFLQL 345
            VRARRGQATD HS+AER+RREKI+ERMK LQ+LVP  NK T KA MLDEII+YV+ LQ 
Sbjct: 257 HVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQR 316

Query: 346 QVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAFEEEVVKLM 405
           QV+ LSM +L +    L    D  A  SK            DI  +S+ +   ++V++L 
Sbjct: 317 QVEFLSM-KLSSVNTRLDFNMD--ALLSK------------DIFPSSNNLMHHQQVLQL- 360

Query: 406 ESNVTKAMQYLQNKGLCLMP 425
           +S+    +    NK L L P
Sbjct: 361 DSSAETLLGDHHNKNLQLNP 380

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 57/71 (80%), Gaps = 1/71 (1%)

Query: 283 TGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVK 341
           T    VRARRGQATD HSIAER+RREKI+ERMK LQ+LVP  +K T KA MLDEII+YV+
Sbjct: 167 TDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQ 226

Query: 342 FLQLQVKVLSM 352
            LQ Q++ LSM
Sbjct: 227 SLQRQIEFLSM 237

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 57/70 (81%), Gaps = 1/70 (1%)

Query: 284 GKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKF 342
           G   VRARRGQAT+ HS+AER+RREKI+ERMK LQ+LVP  NK T KA MLDEII+YV+ 
Sbjct: 299 GYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQS 358

Query: 343 LQLQVKVLSM 352
           LQ QV+ LSM
Sbjct: 359 LQRQVEFLSM 368

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 55/67 (82%), Gaps = 1/67 (1%)

Query: 287 RVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKFLQL 345
            VRARRGQATD HS+AER+RREKI ERMK LQ+LVP  NK T KA MLDEII+YV+ LQ 
Sbjct: 300 HVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQR 359

Query: 346 QVKVLSM 352
           QV+ LSM
Sbjct: 360 QVEFLSM 366

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 62/80 (77%), Gaps = 2/80 (2%)

Query: 284 GKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKF 342
           G   +RARRGQAT+ HS+AER+RREKI+ERMK LQ+LVP  +K T KA MLDEII+YV+ 
Sbjct: 219 GYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQS 278

Query: 343 LQLQVKVLSMSRLGAAGAVL 362
           LQ Q++ LSM +L A   VL
Sbjct: 279 LQCQIEFLSM-KLSAVNPVL 297

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	519
359484248	536	PREDICTED: uncharacterized protein LOC10	0.998	0.966	0.588	1e-157
255550301	592	DNA-directed RNA polymerase beta chain,	0.996	0.873	0.544	1e-143
224068580	456	predicted protein [Populus trichocarpa]	0.845	0.962	0.567	1e-128
297738502	389	unnamed protein product [Vitis vinifera]	0.718	0.958	0.608	1e-115
242095026	489	hypothetical protein SORBIDRAFT_10g00625	0.352	0.374	0.682	3e-60
195616290	481	helix-loop-helix DNA-binding domain cont	0.329	0.355	0.712	4e-60
162460249	481	bHLH transcription factor PTF1 [Zea mays	0.329	0.355	0.712	4e-60
194688984	481	unknown [Zea mays] gi|238014612|gb|ACR38	0.329	0.355	0.706	1e-59
326498007	481	predicted protein [Hordeum vulgare subsp	0.333	0.359	0.68	4e-59
115345831	480	PTF1 [Triticum aestivum]	0.333	0.360	0.68	6e-59

>gi|359484248|ref|XP_002277344.2| PREDICTED: uncharacterized protein LOC100257707 [Vitis vinifera]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 316/537 (58%), Positives = 385/537 (71%), Gaps = 19/537 (3%)

Query: 1   MDEYLDHYFSSSSWSDVNAKERSSWDYSEPLQQNQLLPNSIGVYKDDEKNSPVGIA---- 56
           MDEYLDH FSS+SWSDVN KE SSW   EP Q N +L +SIG+Y+ D+KNSPVG+     
Sbjct: 1   MDEYLDHLFSSTSWSDVNVKEGSSWICGEPSQTNGMLSDSIGIYEGDKKNSPVGMTNSNL 60

Query: 57  -MEGLAAQDTSSFVLGEESEYGIDKNLLSEETQYEKDGQNCNGNLS---SMNRSLKLGNV 112
            +EGL  QDTSS VLG ES++G+ K LL EE   ++D QN  GN S   ++N S ++G V
Sbjct: 61  MIEGLVTQDTSSIVLGGESDHGLGKGLLLEEAPRQQDLQNTEGNSSLNGAVNGSSEVGYV 120

Query: 113 GLQYDPAIPTLGSMNLGSPKQLPLIGEMT-TSPSFVDSEHVGGNSSELSDIQRSLRDLQT 171
           GLQ +    T  S++LGSPKQL LIG M+ +S  F + +HVG N +E SD QRS+ + Q 
Sbjct: 121 GLQLNTPTSTPCSLDLGSPKQLSLIGGMSRSSRPFTELDHVGCNGNEPSDFQRSVGNFQA 180

Query: 172 ISPSPELWLPTSYEEVSSLSSVIEQPRTRGFYLQGATMNHDVDTTGNRYVGMDKILQFDY 231
           + P P+LW   SY   SSLS V+ + + +GF LQG  +++++D   NRYVG D+ILQ D 
Sbjct: 181 LPPIPQLWSQPSYGGGSSLSPVMGEYKMQGFGLQGEYVDNEMDIMRNRYVG-DEILQLDN 239

Query: 232 LSASIVAKGEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRAR 291
           +S++I  KG++E   HP S  +  P  T+   GL SL QT     +GGCNGTGK RVRAR
Sbjct: 240 ISSAIPIKGKEEQHTHPFSPSAVGPHMTMTASGLQSLPQTTVGTASGGCNGTGKPRVRAR 299

Query: 292 RGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLS 351
           RGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEII+YVKFLQLQVKVLS
Sbjct: 300 RGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIEYVKFLQLQVKVLS 359

Query: 352 MSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAFEEEVVKLMESNVTK 411
           MSRLGAA AV+PLITDGQAE SKGLSLSP A Q  DI  + DQIAFE+EVVKLMESNVT 
Sbjct: 360 MSRLGAAEAVVPLITDGQAEGSKGLSLSPSAGQAEDICQSPDQIAFEQEVVKLMESNVTM 419

Query: 412 AMQYLQNKGLCLMPIALATAISSGKASSSDTISEENKFCFSNGLV------QSNSSSASS 465
           AMQYLQ+KGLCLMPIALATAISSGKA+SS T S+E K     G +       + SSS +S
Sbjct: 420 AMQYLQSKGLCLMPIALATAISSGKAASSGTGSDEGKNGLIGGFIPNNNSSSNTSSSNTS 479

Query: 466 NSSLPNNGINQMPLNTNIIIGKPIGESILVNGCNRAV---KEERNSQCTARELKPKT 519
           ++SLP  G +    + N++IGK   E I  + CN A+   +E +++ CTARELK KT
Sbjct: 480 SNSLPGIGTHHTSSDGNVLIGKLSREGITTSSCNGAINKQEELKSTSCTARELKAKT 536

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550301|ref|XP_002516201.1| DNA-directed RNA polymerase beta chain, putative [Ricinus communis] gi|223544687|gb|EEF46203.1| DNA-directed RNA polymerase beta chain, putative [Ricinus communis]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 288/529 (54%), Positives = 365/529 (68%), Gaps = 12/529 (2%)

Query: 1   MDEYLDHYFSSSSWSDVNAKERSSWDYSEPLQQNQLLPNSIGVYKDDEKNSPVGIA---- 56
           MDEY+D  FSSS W+D +AKERS WDYSE  Q N  +  S+ ++++D+ NS + +     
Sbjct: 59  MDEYIDRLFSSSPWADGDAKERSCWDYSETGQLNVSVSTSLRLHENDKGNSLLSVTSSEQ 118

Query: 57  -MEGLAAQDTSSFVLGEESEYGIDKNLLSEETQYEKDGQNCNGNLSSM-NRSLKLGNVGL 114
            ++ L AQDT S  L  ES+Y +DK L S + Q +K+GQNCN + S M N SLK+ N+GL
Sbjct: 119 NIDCLPAQDTPSLGLDSESDYVVDKGLFSGKAQSQKEGQNCNHDPSPMINGSLKMKNMGL 178

Query: 115 QYDPAIPTLGSMNLGSPKQLPLIGEMTTSPSFVDSEHVGGNSSELSDIQRSLRDLQTISP 174
           QYD A+PTL S+ L   KQLP++ ++T+  SF  +   G N S   + QRS +D+Q  S 
Sbjct: 179 QYDTALPTLNSVGLSYSKQLPVLDDLTSPLSFTKANRAGLNDSARFEYQRSFKDVQNPSS 238

Query: 175 SPELWLPTSYEEVSSLSSVIEQPRTRGFYLQGATMNHDVDTTGNRYVGMDKILQFDYLSA 234
             +LW  TS+E+VSSLS+ + Q  T+ F LQG  +  D+D  G RY+ MD ILQ D LSA
Sbjct: 239 MTQLWPSTSFEDVSSLSAAMGQDTTQQFDLQG-NLGDDLDFLGRRYISMDNILQLDKLSA 297

Query: 235 SIVAKGEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQ 294
           S+V+K ++ L  +PLS F+     T+ T G+  L QTAS  P   CNGTGK RVRARRGQ
Sbjct: 298 SVVSKDKENLQGYPLSRFTVGSNMTMTTNGVSYLSQTASTAPAASCNGTGKPRVRARRGQ 357

Query: 295 ATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSR 354
           ATDPHSIAERLRREKIAERMKNLQELVPNS+K DKASMLDEII+YVKFLQLQVKVLSMSR
Sbjct: 358 ATDPHSIAERLRREKIAERMKNLQELVPNSSKVDKASMLDEIIEYVKFLQLQVKVLSMSR 417

Query: 355 LGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAFEEEVVKLMESNVTKAMQ 414
           LGA GAV+PLITDGQAE S  LSLS  A  G+D++ +SDQIAFE EV+KL+ESNVTKA+Q
Sbjct: 418 LGATGAVIPLITDGQAEGSNSLSLSTSAGLGIDVAPSSDQIAFEHEVLKLLESNVTKAIQ 477

Query: 415 YLQNKGLCLMPIALATAISSGKAS-SSDTISEENKFCFSNGLVQSNSSSASSNSSLPNNG 473
           YLQ KG CLMPIALA AISSGKAS S ++  ++ K  F+  +V  N+ S+ S+SS   N 
Sbjct: 478 YLQGKGFCLMPIALAAAISSGKASLSCNSPDDKKKIRFNTDIVHDNNGSSRSSSSSSCNF 537

Query: 474 ----INQMPLNTNIIIGKPIGESILVNGCNRAVKEERNSQCTARELKPK 518
                 Q+  + NI+  +   + ++ NGCN  +K E       RELKPK
Sbjct: 538 SGTETCQVSYDCNIMTEQLGSKGMVGNGCNGILKLEDAKNQFLRELKPK 586

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068580|ref|XP_002326150.1| predicted protein [Populus trichocarpa] gi|222833343|gb|EEE71820.1| predicted protein [Populus trichocarpa]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 259/456 (56%), Positives = 323/456 (70%), Gaps = 17/456 (3%)

Query: 56  AMEGLAAQDTSSFVLGEESEYGIDKNLLSEETQYEKDGQNCNGNLS--SMNR-SLKLGNV 112
           ++E LA QDTSS VLG ES+Y +DK L+SE+ + + D QNCNGN S   M R +LK GN 
Sbjct: 7   SVESLATQDTSSVVLGSESDYAVDKVLISEQARLQNDCQNCNGNPSPDGMARGNLKFGNT 66

Query: 113 GLQYDPAIPTLGSMNLGSPKQLPLIGEMTTSPSFVDSEHVGGNSSELSDIQRSLRDLQTI 172
           GLQ +  +PTL S+N   P QLP++G++T+  SF ++ + G N  E S+  RSL++LQ +
Sbjct: 67  GLQCNGILPTLSSLNY--PNQLPIVGDLTSYLSFSEASNAGCNGREQSEYLRSLKNLQNL 124

Query: 173 SPSPELWLPTSYEEVSSLSSVIEQPRTRGFYLQGATMNHDVDTTGNRYVGMDKILQFDYL 232
           S  P+LW   SYE VSSL  ++ Q R  G  L+G  ++ D+   G  Y+GMD+IL+ D L
Sbjct: 125 SSIPQLWPSQSYEGVSSLPPLMGQDRIEGSGLRGGNLDDDMHIMGKGYMGMDEILRLDKL 184

Query: 233 SASIVAKGEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARR 292
           SAS   +G+++L + P S   + P   +    L S+ QT SA P  GCNGTGK RVRARR
Sbjct: 185 SASPTTEGKEDLQSCPFSSGIAEPNVNMSMNQLSSMPQTTSAAPVEGCNGTGKTRVRARR 244

Query: 293 GQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSM 352
           G ATDPHSIAERLRREKIAERMKNLQELVPNSNK DKASMLDEII+YVKFLQLQVKVLSM
Sbjct: 245 GHATDPHSIAERLRREKIAERMKNLQELVPNSNKVDKASMLDEIIEYVKFLQLQVKVLSM 304

Query: 353 SRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAFEEEVVKLMESNVTKA 412
           SRLGAAGAV+PL+TDGQ E    LSLSP A  G+DIS ++DQIAFE+EV+KL+ES+VT A
Sbjct: 305 SRLGAAGAVIPLLTDGQPEGHNSLSLSPSAGLGIDISPSADQIAFEQEVLKLLESDVTMA 364

Query: 413 MQYLQNKGLCLMPIALATAISSGKASSSDTISEENK-FCFSNGLVQSNSSSASSNSSLPN 471
           MQYLQ+KGLCLMPIALA AISS KAS S T SEE K   +++GLV S+SS          
Sbjct: 365 MQYLQSKGLCLMPIALAAAISSVKASLSGTTSEERKNNGYTSGLVSSSSSIT-------- 416

Query: 472 NGINQMPL--NTNIIIGKPIGESILVNGCNRAVKEE 505
            GI+  P+  + NI  G    + ++VNGCN  VK+E
Sbjct: 417 -GIDTHPMSNDNNIATGTLSSKGMIVNGCNEVVKQE 451

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738502|emb|CBI27747.3| unnamed protein product [Vitis vinifera]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/383 (60%), Positives = 280/383 (73%), Gaps = 10/383 (2%)

Query: 146 FVDSEHVGGNSSELSDIQRSLRDLQTISPSPELWLPTSYEEVSSLSSVIEQPRTRGFYLQ 205
           F + +HVG N +E SD QRS+ + Q + P P+LW   SY   SSLS V+ + + +GF LQ
Sbjct: 8   FTELDHVGCNGNEPSDFQRSVGNFQALPPIPQLWSQPSYGGGSSLSPVMGEYKMQGFGLQ 67

Query: 206 GATMNHDVDTTGNRYVGMDKILQFDYLSASIVAKGEQELPNHPLSCFSSRPLPTVPTVGL 265
           G  +++++D   NRYVG D+ILQ D +S++I  KG++E   HP S  +  P  T+   GL
Sbjct: 68  GEYVDNEMDIMRNRYVG-DEILQLDNISSAIPIKGKEEQHTHPFSPSAVGPHMTMTASGL 126

Query: 266 PSLQQTASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSN 325
            SL QT     +GGCNGTGK RVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSN
Sbjct: 127 QSLPQTTVGTASGGCNGTGKPRVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSN 186

Query: 326 KTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQG 385
           KTDKASMLDEII+YVKFLQLQVKVLSMSRLGAA AV+PLITDGQAE SKGLSLSP A Q 
Sbjct: 187 KTDKASMLDEIIEYVKFLQLQVKVLSMSRLGAAEAVVPLITDGQAEGSKGLSLSPSAGQA 246

Query: 386 VDISLNSDQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAISSGKASSSDTISE 445
            DI  + DQIAFE+EVVKLMESNVT AMQYLQ+KGLCLMPIALATAISSGKA+SS T S+
Sbjct: 247 EDICQSPDQIAFEQEVVKLMESNVTMAMQYLQSKGLCLMPIALATAISSGKAASSGTGSD 306

Query: 446 ENKFCFSNGLV------QSNSSSASSNSSLPNNGINQMPLNTNIIIGKPIGESILVNGCN 499
           E K     G +       + SSS +S++SLP  G +    + N++IGK   E I  + CN
Sbjct: 307 EGKNGLIGGFIPNNNSSSNTSSSNTSSNSLPGIGTHHTSSDGNVLIGKLSREGITTSSCN 366

Query: 500 RAV---KEERNSQCTARELKPKT 519
            A+   +E +++ CTARELK KT
Sbjct: 367 GAINKQEELKSTSCTARELKAKT 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242095026|ref|XP_002438003.1| hypothetical protein SORBIDRAFT_10g006250 [Sorghum bicolor] gi|241916226|gb|EER89370.1| hypothetical protein SORBIDRAFT_10g006250 [Sorghum bicolor]

 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 129/189 (68%), Positives = 146/189 (77%), Gaps = 6/189 (3%)

Query: 263 VGLPSLQQTASANPTGGCNGTG-KARVRARRGQATDPHSIAERLRREKIAERMKNLQELV 321
           V  PS  QT    P    NG G K RVRARRGQATDPHSIAERLRREKI++RMK+LQ+LV
Sbjct: 297 VSHPSDVQT---QPNSAGNGVGVKPRVRARRGQATDPHSIAERLRREKISDRMKSLQDLV 353

Query: 322 PNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLS-P 380
           PNSNK DKASMLDEIIDYVKFLQLQVKVLSMSRLGA GAVLPL+T+ Q E   G  LS P
Sbjct: 354 PNSNKADKASMLDEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLTESQTEGYHGQPLSAP 413

Query: 381 QADQGVDISLNS-DQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAISSGKASS 439
              QG+  +L+S D   FEEEVVKLME+++T AMQYLQNKGLCLMP+ALA+AIS+ K  S
Sbjct: 414 TNTQGLLDALDSEDAFVFEEEVVKLMETSITSAMQYLQNKGLCLMPVALASAISTQKGVS 473

Query: 440 SDTISEENK 448
           +  I  E +
Sbjct: 474 AAAIPPERR 482

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195616290|gb|ACG29975.1| helix-loop-helix DNA-binding domain containing protein [Zea mays]

 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/174 (71%), Positives = 140/174 (80%), Gaps = 3/174 (1%)

Query: 276 PTGGCNGTG-KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLD 334
           P    NG G K RVRARRGQATDPHSIAERLRREKI++RMKNLQ+LVPNSNK DKASMLD
Sbjct: 307 PNSVGNGVGVKPRVRARRGQATDPHSIAERLRREKISDRMKNLQDLVPNSNKADKASMLD 366

Query: 335 EIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLS-PQADQG-VDISLNS 392
           EIIDYVKFLQLQVKVLSMSRLGA GAVLPL+ + Q E  +G  LS P   QG +D   + 
Sbjct: 367 EIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLAESQTEGYRGQLLSAPTNAQGLLDTEESE 426

Query: 393 DQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAISSGKASSSDTISEE 446
           D  AFEEEVVKLME+++T AMQYLQNKGLCLMP+ALA+AIS+ K  S+ +I  E
Sbjct: 427 DTFAFEEEVVKLMETSITSAMQYLQNKGLCLMPVALASAISTQKGVSAASIPPE 480

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|162460249|ref|NP_001105867.1| bHLH transcription factor PTF1 [Zea mays] gi|93359745|gb|ABF13333.1| bHLH transcription factor PTF1 [Zea mays]

 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/174 (71%), Positives = 140/174 (80%), Gaps = 3/174 (1%)

Query: 276 PTGGCNGTG-KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLD 334
           P    NG G K RVRARRGQATDPHSIAERLRREKI++RMKNLQ+LVPNSNK DKASMLD
Sbjct: 307 PNSVGNGVGVKPRVRARRGQATDPHSIAERLRREKISDRMKNLQDLVPNSNKADKASMLD 366

Query: 335 EIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLS-PQADQG-VDISLNS 392
           EIIDYVKFLQLQVKVLSMSRLGA GAVLPL+ + Q E  +G  LS P   QG +D   + 
Sbjct: 367 EIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLAESQTEGYRGQLLSAPTNAQGLLDTEESE 426

Query: 393 DQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAISSGKASSSDTISEE 446
           D  AFEEEVVKLME+++T AMQYLQNKGLCLMP+ALA+AIS+ K  S+ +I  E
Sbjct: 427 DTFAFEEEVVKLMETSITSAMQYLQNKGLCLMPVALASAISTQKGVSAASIPPE 480

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194688984|gb|ACF78576.1| unknown [Zea mays] gi|238014612|gb|ACR38341.1| unknown [Zea mays] gi|413952840|gb|AFW85489.1| pi starvation-induced transcription factor1 [Zea mays]

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/174 (70%), Positives = 140/174 (80%), Gaps = 3/174 (1%)

Query: 276 PTGGCNGTG-KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLD 334
           P    NG G K RVRARRGQATDPHSIAERLRREKI++RMKNLQ+LVPNSNK DKASMLD
Sbjct: 307 PNSVGNGVGVKPRVRARRGQATDPHSIAERLRREKISDRMKNLQDLVPNSNKADKASMLD 366

Query: 335 EIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLS-PQADQG-VDISLNS 392
           EIID+VKFLQLQVKVLSMSRLGA GAVLPL+ + Q E  +G  LS P   QG +D   + 
Sbjct: 367 EIIDHVKFLQLQVKVLSMSRLGAPGAVLPLLAESQTEGYRGQLLSAPTNAQGLLDTEESE 426

Query: 393 DQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAISSGKASSSDTISEE 446
           D  AFEEEVVKLME+++T AMQYLQNKGLCLMP+ALA+AIS+ K  S+ +I  E
Sbjct: 427 DTFAFEEEVVKLMETSITSAMQYLQNKGLCLMPVALASAISTQKGVSAASIPPE 480

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326498007|dbj|BAJ94866.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 119/175 (68%), Positives = 139/175 (79%), Gaps = 2/175 (1%)

Query: 274 ANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASML 333
           AN   G + + K R RARRGQATDPHSIAERLRREKI+ERMKNLQ+LVPNSNK DK+SML
Sbjct: 306 ANSGNGNSASAKPRARARRGQATDPHSIAERLRREKISERMKNLQDLVPNSNKADKSSML 365

Query: 334 DEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSL-SPQADQG-VDISLN 391
           DEIIDYVKFLQLQVKVLSMSRLGA GAVLPL+ + Q E      L SP   QG +D++  
Sbjct: 366 DEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLAESQTEGRSNSPLSSPTTSQGLLDVAGP 425

Query: 392 SDQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAISSGKASSSDTISEE 446
            D + FE+EV+KLME+++T AMQYLQNKGLCLMPIALA+AIS+ K +S+  I  E
Sbjct: 426 DDSLVFEQEVIKLMETSITNAMQYLQNKGLCLMPIALASAISNQKGTSAAAIPPE 480

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115345831|gb|ABI95371.1| PTF1 [Triticum aestivum]

 Score =  234 bits (598), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 119/175 (68%), Positives = 138/175 (78%), Gaps = 2/175 (1%)

Query: 274 ANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASML 333
           AN   G + + K R RARRGQATDPHSIAERLRREKI+ERMKNLQ+LVPNSNK DK+SML
Sbjct: 305 ANSANGNSASAKPRARARRGQATDPHSIAERLRREKISERMKNLQDLVPNSNKADKSSML 364

Query: 334 DEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSL-SPQADQG-VDISLN 391
           DEIIDYVKFLQLQVKVL MSRLGA GAVLPL+ + Q E      L SP A QG +D +  
Sbjct: 365 DEIIDYVKFLQLQVKVLCMSRLGAPGAVLPLLAESQTEGRSNSPLSSPTASQGLLDAAGP 424

Query: 392 SDQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAISSGKASSSDTISEE 446
            D + FE+EV+KLME+++T AMQYLQNKGLCLMPIALA+AIS+ K +S+  I  E
Sbjct: 425 EDSLVFEQEVIKLMETSITNAMQYLQNKGLCLMPIALASAISNQKGTSAAAIPPE 479

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	519
UNIPROTKB|Q6Z7E7	524	P0020C11.18 "Putative bHLH tra	0.358	0.354	0.625	1.5e-53
UNIPROTKB|Q69Y51	401	P0698A06.26-2 "Putative bHLH t	0.321	0.416	0.698	3e-53
TAIR|locus:2047555	350	LRL1 "AT2G24260" [Arabidopsis	0.331	0.491	0.584	2.6e-47
TAIR|locus:2147760	297	LRL3 "AT5G58010" [Arabidopsis	0.352	0.616	0.584	1.6e-45
UNIPROTKB|Q6K8Y4	463	OJ1695_H09.18 "Basic helix-loo	0.260	0.291	0.622	2e-45
UNIPROTKB|Q6EPZ6	499	P0014G10.34 "BHLH transcriptio	0.304	0.316	0.607	3.5e-43
TAIR|locus:2126624	310	LRL2 "AT4G30980" [Arabidopsis	0.479	0.803	0.460	3.5e-43
UNIPROTKB|Q7Y1H4	294	OSJNBa0094F01.11 "Putative unc	0.331	0.585	0.56	2.2e-41
TAIR|locus:2007534	302	AT1G03040 "AT1G03040" [Arabido	0.317	0.546	0.579	1.2e-40
TAIR|locus:2132303	310	UNE12 "AT4G02590" [Arabidopsis	0.310	0.519	0.584	1.6e-40

UNIPROTKB|Q6Z7E7 P0020C11.18 "Putative bHLH transcription factor PTF1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 127/203 (62%), Positives = 148/203 (72%)

Query:   261 PTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQEL 320
             P V L  +    + + + G NG  K RVRARRGQATDPHSIAERLRREKI++RMK+LQEL
Sbjct:   288 PFVNLSEVLPKGNGSGSAG-NGAPKPRVRARRGQATDPHSIAERLRREKISDRMKDLQEL 346

Query:   321 VPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSP 380
             VPNSNKT+KASMLDEIIDYVKFLQLQVKVLSMSRLGAA AV+PL+T+ Q E S G  LSP
Sbjct:   347 VPNSNKTNKASMLDEIIDYVKFLQLQVKVLSMSRLGAAEAVVPLLTETQTE-SPGFLLSP 405

Query:   381 QADQG--------VDISLNSDQ-------IAFEEEVVKLMESNVTKAMQYLQNKGLCLMP 425
             ++  G        V   L  DQ         FE+EVVKLME N+T AMQYLQ+KGLCLMP
Sbjct:   406 RSSSGERQAGAGAVTGGLPGDQPELLDGGAMFEQEVVKLMEDNMTTAMQYLQSKGLCLMP 465

Query:   426 IALATAISSGKASSSDTISEENK 448
             +ALA+AIS+ K +SS  +  E K
Sbjct:   466 VALASAISAQKGTSSAAVRPEKK 488

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q69Y51 P0698A06.26-2 "Putative bHLH transcription factor PTF1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 118/169 (69%), Positives = 132/169 (78%)

Query:   274 ANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASML 333
             AN   G +   K R RARRGQATDPHSIAERLRREKI+ERMKNLQ LVPNSNK DKASML
Sbjct:   225 ANSAPGNSANAKPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASML 284

Query:   334 DEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQA-DQGV-DISLN 391
             DEIIDYVKFLQLQVKVLSMSRLGA GAVLPL+ + Q E     SLS     QG  D+  +
Sbjct:   285 DEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLRESQTECHSNPSLSASTISQGPPDMPDS 344

Query:   392 SDQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAISSGKASSS 440
              D  AFE+EVVKLME+++  AMQYLQNKGLCLMPIALA+AIS+ K  ++
Sbjct:   345 EDSSAFEQEVVKLMETSIISAMQYLQNKGLCLMPIALASAISNQKGMAA 393

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2047555 LRL1 "AT2G24260" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
 Identities = 104/178 (58%), Positives = 125/178 (70%)

Query:   270 QTASANPTGGCNGT---GKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK 326
             Q +++  TGG        + ++RARRGQATDPHSIAERLRRE+IAERMK LQELVPN NK
Sbjct:   117 QASASTATGGTVAAPPQSRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK 176

Query:   327 TDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGV 386
             TDKASMLDEIIDYVKFLQLQVKVLSMSRLG A +V   I++  A  S G + S       
Sbjct:   177 TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAASVSSQISE--AGGSHGNASSAMVGGSQ 234

Query:   387 DISLNSDQIAF-EEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAISSGKASSSDTI 443
                 ++D +   E +V KLME ++  AMQYLQ KGLCLMPI+LATAIS+    S + +
Sbjct:   235 TAGNSNDSVTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPL 292

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0080147 "root hair cell development" evidence=IMP

TAIR|locus:2147760 LRL3 "AT5G58010" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 111/190 (58%), Positives = 131/190 (68%)

Query:   261 PTVGLPS-LQQTASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQE 319
             PT+G    LQ   + + T       K RVRARRGQATDPHSIAERLRRE+IAERMK+LQE
Sbjct:    71 PTMGSQEGLQPQGTVSTTSAPVVRQKPRVRARRGQATDPHSIAERLRRERIAERMKSLQE 130

Query:   320 LVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLS 379
             LVPN+NKTDKASMLDEII+YV+FLQLQVKVLSMSRLG AG+V P +    AEA   L+  
Sbjct:   131 LVPNTNKTDKASMLDEIIEYVRFLQLQVKVLSMSRLGGAGSVGPRLNGLSAEAGGRLNAL 190

Query:   380 PQADQGVDI------SLNSDQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAIS 433
                  G++       S N    + E+ V KLME ++  AMQYLQ KGLCLMPI+LATAIS
Sbjct:   191 TAPCNGLNGNGNATGSSNESLRSTEQRVAKLMEEDMGSAMQYLQGKGLCLMPISLATAIS 250

Query:   434 SGKASSSDTI 443
             S    S  ++
Sbjct:   251 SSTTHSRGSL 260

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0080147 "root hair cell development" evidence=IMP

UNIPROTKB|Q6K8Y4 OJ1695_H09.18 "Basic helix-loop-helix (BHLH)-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 390 (142.3 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
 Identities = 89/143 (62%), Positives = 106/143 (74%)

Query:   305 LRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPL 364
             LRRE+IAERMK LQELVPN+NKTDKASMLDEIIDYVKFLQLQVKVLSMSRLG A AV PL
Sbjct:   251 LRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGASAVAPL 310

Query:   365 ITDGQAEAS-KGLSLSPQAD-QGVDISLNSDQIA------FEEEVVKLMESNVTKAMQYL 416
             + +  +E++  G + S   + +  + S N D          E++V KLME ++  AMQYL
Sbjct:   311 VANMSSESNGNGNATSSSGNGEAANGSSNGDNNGGGTLRVTEQQVAKLMEEDMGSAMQYL 370

Query:   417 QNKGLCLMPIALATAISSGKASS 439
             Q KGLCLMPI+LATAISS  +SS
Sbjct:   371 QGKGLCLMPISLATAISSATSSS 393

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q6EPZ6 P0014G10.34 "BHLH transcription factor PTF1-like protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 110/181 (60%), Positives = 126/181 (69%)

Query:   273 SANPTGGCNGTG-----KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK- 326
             +A P  G  G G     + RVRARRGQATDPHSIAERLRRE+IAERMK LQELVPN+NK 
Sbjct:   230 AAQPQAGAAGGGAPAPPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKL 289

Query:   327 --TDKASMLDEIIDYVKFLQLQVK----------VLSMSRLGAAGAVLPLITDGQAEASK 374
               TDKASMLDEIIDYVKFLQLQVK          VLSMSRLG A AV PL+ D  +E   
Sbjct:   290 MQTDKASMLDEIIDYVKFLQLQVKASTYTKLLIHVLSMSRLGGAAAVAPLVADMSSEGRG 349

Query:   375 GLSLSPQADQGVDISLNSDQIAF-EEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAIS 433
             G +    A+ G   +  SD +   E++V KLME ++  AMQYLQ KGLCLMPI+LA+AIS
Sbjct:   350 GGA----ANGGAPAAAGSDSLTVTEQQVAKLMEEDMGTAMQYLQGKGLCLMPISLASAIS 405

Query:   434 S 434
             S
Sbjct:   406 S 406

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2126624 LRL2 "AT4G30980" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 127/276 (46%), Positives = 153/276 (55%)

Query:   173 SPSPELWLPTSYEEVSSLSSVIEQPRTRGFYLQGATM-NHD-VDTTGNRYVGMDKILQFD 230
             SPSP L  P +++    L  +          L        D    TG  +   D   Q  
Sbjct:    12 SPSPHLQSPATFDHDDFLHHIFSSTPWPSSVLDDTPPPTSDCAPVTGFHHHDADSRNQIT 71

Query:   231 YLSASIVAKGEQELPNHPL-SCFSSRPLPT-VP--TVGLPSLQQTASANPT-GGCNGTG- 284
              +  S         PN  L + FS+  LP  +P  + G    Q  A+A+ T GG      
Sbjct:    72 MIPLS------HNHPNDALFNGFSTGSLPFHLPQGSGGQTQTQSQATASATTGGATAQPQ 125

Query:   285 -KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFL 343
              K +VRARRGQATDPHSIAERLRRE+IAERMK+LQELVPN NKTDKASMLDEIIDYVKFL
Sbjct:   126 TKPKVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFL 185

Query:   344 QLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAFEEEVVK 403
             QLQVKVLSMSRLG A +    I++    + +  S S +A               E +V K
Sbjct:   186 QLQVKVLSMSRLGGAASASSQISEDAGGSHENTSSSGEAKMT------------EHQVAK 233

Query:   404 LMESNVTKAMQYLQNKGLCLMPIALATAISSGKASS 439
             LME ++  AMQYLQ KGLCLMPI+LAT IS+    S
Sbjct:   234 LMEEDMGSAMQYLQGKGLCLMPISLATTISTATCPS 269

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0080147 "root hair cell development" evidence=IMP

UNIPROTKB|Q7Y1H4 OSJNBa0094F01.11 "Putative uncharacterized protein OSJNBa0094F01.11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 98/175 (56%), Positives = 120/175 (68%)

Query:   258 PTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNL 317
             PT PT      Q        G      + +VRARRGQATDPHSIAERLRRE+IAERM+ L
Sbjct:   103 PTPPTQVFHPQQSKQGGAAVGPQPPAPRPKVRARRGQATDPHSIAERLRRERIAERMRAL 162

Query:   318 QELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLS 377
             QELVPN+NKTD+A+MLDEI+DYVKFL+LQVKVLSMSRLG AGAV  L+ D      KG +
Sbjct:   163 QELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMSRLGGAGAVAQLVADIPLSV-KGEA 221

Query:   378 LSPQADQGVDISLNSDQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAI 432
                  +Q +    ++D    E +V KLME ++  AMQ+LQ+K LC+MPI+LA AI
Sbjct:   222 SDSGGNQQIWEKWSTD--GTERQVAKLMEEDIGAAMQFLQSKALCMMPISLAMAI 274

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2007534 AT1G03040 "AT1G03040" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 102/176 (57%), Positives = 124/176 (70%)

Query:   274 ANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASML 333
             A P      T + RVRARRGQATDPHSIAERLRRE+IAER+++LQELVP  NKTD+A+M+
Sbjct:   130 APPMPHQQSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMI 189

Query:   334 DEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQAD-QGVDISLNS 392
             DEI+DYVKFL+LQVKVLSMSRLG AGAV PL+T+        LS S + + Q V    ++
Sbjct:   190 DEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTE------MPLSSSVEDETQAVWEKWSN 243

Query:   393 DQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAI--SSGKASSSDTISEE 446
             D    E +V KLME NV  AMQ LQ+K LC+MPI+LA AI  S    +SS  +  E
Sbjct:   244 D--GTERQVAKLMEENVGAAMQLLQSKALCIMPISLAMAIYHSQPPDTSSSIVKPE 297

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2132303 UNE12 "AT4G02590" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 97/166 (58%), Positives = 117/166 (70%)

Query:   285 KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQ 344
             + RVRARRGQATDPHSIAERLRRE+IAER++ LQELVP  NKTD+A+M+DEI+DYVKFL+
Sbjct:   143 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLR 202

Query:   345 LQVKVLSMSRLGAAGAVLPLITDGQAEAS--KGLSLSPQADQGVDISLNSDQIAFEEEVV 402
             LQVKVLSMSRLG AGAV PL+TD    +S         +  Q      ++D    E +V 
Sbjct:   203 LQVKVLSMSRLGGAGAVAPLVTDMPLSSSVEDETGEGGRTPQPAWEKWSND--GTERQVA 260

Query:   403 KLMESNVTKAMQYLQNKGLCLMPIALATAI-SSGKASSSDTISEEN 447
             KLME NV  AMQ LQ+K LC+MPI+LA AI  S    +S  +  EN
Sbjct:   261 KLMEENVGAAMQLLQSKALCMMPISLAMAIYHSQPPDTSSVVKPEN 306

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016367001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (485 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	519
smart00353	53	smart00353, HLH, helix loop helix domain	3e-12
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	1e-11
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	9e-11

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 61.1 bits (149), Expect = 3e-12
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 300 SIAERLRREKIAERMKNLQELVP---NSNKTDKASMLDEIIDYVKFLQLQVK 348
           +  ER RR KI E    L+ L+P    + K  KA +L   I+Y+K LQ +++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 59.5 bits (145), Expect = 1e-11
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 292 RGQATDPHSIAERLRREKIAERMKNLQELVPN---SNKTDKASMLDEIIDYVKFLQLQVK 348
           R    + H++ ER RRE+I +    L+ L+P    S K  KA +L + +DY+K LQ  ++
Sbjct: 1   RKSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 56.7 bits (138), Expect = 9e-11
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 299 HSIAERLRREKIAERMKNLQELVPNSN--KTDKASMLDEIIDYVKFLQ 344
           H+  ER RR++I +  + L+EL+P     K  KA +L   I+Y+K LQ
Sbjct: 5   HNERERRRRDRINDAFEELRELLPTPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	519
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.33
smart00353	53	HLH helix loop helix domain.	99.27
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.25
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	99.03
KOG1318	411	consensus Helix loop helix transcription factor EB	98.99
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.22
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.15
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	98.07
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	97.66
KOG0561	373	consensus bHLH transcription factor [Transcription	97.39
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.17
KOG4029	228	consensus Transcription factor HAND2/Transcription	96.82
PLN03217	93	transcription factor ATBS1; Provisional	96.8
KOG3910	632	consensus Helix loop helix transcription factor [T	94.92
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	92.32
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	83.42
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	81.57
KOG3559	598	consensus Transcriptional regulator SIM1 [Transcri	81.17

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.33  E-value=1.4e-12  Score=100.36  Aligned_cols=52  Identities=37%  Similarity=0.645  Sum_probs=49.2

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPNS---NKTDKASMLDEIIDYVKFLQLQVK  348 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~~---~K~DKASIL~eAI~YIk~Lq~qVk  348 (519)
                      ..|+.+||+||++||+.|..|+.+||..   .|+||++||+.||+||++|+.+++
T Consensus         6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            5699999999999999999999999998   899999999999999999999863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.27  E-value=8.5e-12  Score=94.63  Aligned_cols=49  Identities=39%  Similarity=0.594  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 010045          300 SIAERLRREKIAERMKNLQELVPN---SNKTDKASMLDEIIDYVKFLQLQVK  348 (519)
Q Consensus       300 ~~aER~RRekIner~~aLrsLVP~---~~K~DKASIL~eAI~YIk~Lq~qVk  348 (519)
                      +..||+||++||+.|..|+.+||.   ..|+||++||..||+||+.|+++++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            368999999999999999999995   6799999999999999999999986

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.25  E-value=8.9e-12  Score=96.02  Aligned_cols=48  Identities=44%  Similarity=0.699  Sum_probs=45.5

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHH
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ  344 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~~-----~K~DKASIL~eAI~YIk~Lq  344 (519)
                      ..|+..||+||++||+.|..|+.+||.+     .|+||++||+.||+||++||
T Consensus         3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            4599999999999999999999999987     78999999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=99.03  E-value=1.6e-10  Score=111.23  Aligned_cols=57  Identities=37%  Similarity=0.555  Sum_probs=51.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPNS-------NKTDKASMLDEIIDYVKFLQLQVKVLSMS  353 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~~-------~K~DKASIL~eAI~YIk~Lq~qVk~Le~~  353 (519)
                      ..|..+||+||+.|+..+..|+.|||.|       .|+.||.||+++|+||.+|+.++.+.+.+
T Consensus        64 ~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e  127 (229)
T KOG1319|consen   64 RAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEE  127 (229)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999999999976       37779999999999999999998877754

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=98.99  E-value=9.9e-10  Score=115.89  Aligned_cols=55  Identities=36%  Similarity=0.603  Sum_probs=49.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHH
Q 010045          296 TDPHSIAERLRREKIAERMKNLQELVPNS----NKTDKASMLDEIIDYVKFLQLQVKVL  350 (519)
Q Consensus       296 ~~~H~~aER~RRekIner~~aLrsLVP~~----~K~DKASIL~eAI~YIk~Lq~qVk~L  350 (519)
                      +..|+..|||||++||++|++|..|||.+    .|..|..||..+++||+.||+..++.
T Consensus       234 rd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~  292 (411)
T KOG1318|consen  234 RDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA  292 (411)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence            37899999999999999999999999988    46679999999999999999876633

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.22  E-value=6.5e-07  Score=89.64  Aligned_cols=52  Identities=25%  Similarity=0.470  Sum_probs=46.5

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCCC--------CCCChhhHHHHHHHHHHHHHHHHH
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPNS--------NKTDKASMLDEIIDYVKFLQLQVK  348 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~~--------~K~DKASIL~eAI~YIk~Lq~qVk  348 (519)
                      ..|-+.||+||+|||+.+.+|+.|||.+        .|++||-||+-|++|++.||.+.+
T Consensus        34 ~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~   93 (250)
T KOG4304|consen   34 VRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ   93 (250)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence            5588999999999999999999999953        678899999999999999987643

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.15  E-value=2.4e-06  Score=96.87  Aligned_cols=51  Identities=27%  Similarity=0.513  Sum_probs=48.2

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 010045          296 TDPHSIAERLRREKIAERMKNLQELVPNS----NKTDKASMLDEIIDYVKFLQLQ  346 (519)
Q Consensus       296 ~~~H~~aER~RRekIner~~aLrsLVP~~----~K~DKASIL~eAI~YIk~Lq~q  346 (519)
                      +++|+.+|||||+++|.-|.+|.+|||.+    .|+||.+||..||++||.++++
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            37899999999999999999999999986    6999999999999999999986

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=98.07  E-value=1.6e-05  Score=90.88  Aligned_cols=72  Identities=29%  Similarity=0.449  Sum_probs=59.8

Q ss_pred             cCcccccCC-CCCCcchHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 010045          285 KARVRARRG-QATDPHSIAERLRREKIAERMKNLQELVPNS-NKTDKASMLDEIIDYVKFLQLQVKVLSMSRLG  356 (519)
Q Consensus       285 kpr~r~rr~-~a~~~H~~aER~RRekIner~~aLrsLVP~~-~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~~~  356 (519)
                      +|..|-.-+ ..+.+|++.|||-|--|||||.+|+.+||+. .|+.|.++|..||+||++|+...+.|...+..
T Consensus       265 ~Pi~rl~~G~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~  338 (953)
T KOG2588|consen  265 KPIKRLLPGGEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENAS  338 (953)
T ss_pred             CchhhcCCCCcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhh
Confidence            444443332 4578899999999999999999999999986 69999999999999999999988877755443

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=97.66  E-value=0.00013  Score=72.85  Aligned_cols=57  Identities=19%  Similarity=0.328  Sum_probs=48.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHhccCCCC--CCC-ChhhHHHHHHHHHHHHHHHHHHHHh
Q 010045          296 TDPHSIAERLRREKIAERMKNLQELVPNS--NKT-DKASMLDEIIDYVKFLQLQVKVLSM  352 (519)
Q Consensus       296 ~~~H~~aER~RRekIner~~aLrsLVP~~--~K~-DKASIL~eAI~YIk~Lq~qVk~Le~  352 (519)
                      +..|+.-||+||..|++.|..|+.+||..  .|. +.++||.+|++||+.|+.+..+.+.
T Consensus        60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~  119 (232)
T KOG2483|consen   60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQ  119 (232)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHH
Confidence            36699999999999999999999999976  222 3699999999999999987766653

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=97.39  E-value=8.2e-05  Score=76.68  Aligned_cols=54  Identities=28%  Similarity=0.431  Sum_probs=47.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHH
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPN--SNKTDKASMLDEIIDYVKFLQLQVKVL  350 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~--~~K~DKASIL~eAI~YIk~Lq~qVk~L  350 (519)
                      +--+..||+|=.-||-.|..||+|+|.  +.|..||.||+.+.+||.+|..+.-+|
T Consensus        62 eIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l  117 (373)
T KOG0561|consen   62 EIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL  117 (373)
T ss_pred             HhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence            345678999999999999999999996  589999999999999999998876554

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.17  E-value=0.0007  Score=68.49  Aligned_cols=57  Identities=23%  Similarity=0.347  Sum_probs=48.8

Q ss_pred             chHHHHHHHHHHHHHHHHHhc-cCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 010045          299 HSIAERLRREKIAERMKNLQE-LVPN-SNKTDKASMLDEIIDYVKFLQLQVKVLSMSRL  355 (519)
Q Consensus       299 H~~aER~RRekIner~~aLrs-LVP~-~~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~~  355 (519)
                      -.+.||||=+|+||.|.+|.. -.++ -++.-|..||..||+||..||.-++++.+...
T Consensus       122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~  180 (284)
T KOG3960|consen  122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK  180 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            448999999999999999976 4454 36788999999999999999999999986543

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=96.82  E-value=0.0012  Score=64.65  Aligned_cols=58  Identities=21%  Similarity=0.353  Sum_probs=50.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPN----SNKTDKASMLDEIIDYVKFLQLQVKVLSMSR  354 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~----~~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~  354 (519)
                      ..++..||.|=+-+|..|..||.+||.    ..|..|..+|.-||.||++|+.-++.-+...
T Consensus       111 ~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  111 QARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             hhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            457788999999999999999999995    4678999999999999999999887766543

>PLN03217 transcription factor ATBS1; Provisional

Probab=96.80  E-value=0.0028  Score=55.16  Aligned_cols=48  Identities=27%  Similarity=0.473  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHhccCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 010045          306 RREKIAERMKNLQELVPNS------NKTDKASMLDEIIDYVKFLQLQVKVLSMS  353 (519)
Q Consensus       306 RRekIner~~aLrsLVP~~------~K~DKASIL~eAI~YIk~Lq~qVk~Le~~  353 (519)
                      --+.|+|.+..||+|+|..      .|...+-||+|+..||+.||.+|..|.+.
T Consensus        18 sddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSer   71 (93)
T PLN03217         18 SEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSER   71 (93)
T ss_pred             CHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999964      45556679999999999999999999875

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=94.92  E-value=0.022  Score=62.44  Aligned_cols=54  Identities=26%  Similarity=0.304  Sum_probs=45.0

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCCCCC----CChhhHHHHHHHHHHHHHHHHHHH
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPNSNK----TDKASMLDEIIDYVKFLQLQVKVL  350 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~~~K----~DKASIL~eAI~YIk~Lq~qVk~L  350 (519)
                      ...++.||.|=+.|||.|++|..+.----|    ..|.-||..||.-|-.|++||++-
T Consensus       528 ~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER  585 (632)
T KOG3910|consen  528 MANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER  585 (632)
T ss_pred             hhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence            457788898888999999999998653323    358999999999999999999864

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=92.32  E-value=0.074  Score=50.92  Aligned_cols=51  Identities=24%  Similarity=0.429  Sum_probs=45.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 010045          298 PHSIAERLRREKIAERMKNLQELVPNS--NKTDKASMLDEIIDYVKFLQLQVK  348 (519)
Q Consensus       298 ~H~~aER~RRekIner~~aLrsLVP~~--~K~DKASIL~eAI~YIk~Lq~qVk  348 (519)
                      -|++.||+|-..+|+.|.+||.++|..  .|..|.--|.-|..||.+|-+-.+
T Consensus        81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~  133 (173)
T KOG4447|consen   81 MANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ  133 (173)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence            499999999999999999999999964  788888889999999999976543

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=83.42  E-value=1.3  Score=49.66  Aligned_cols=39  Identities=26%  Similarity=0.510  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHH
Q 010045          303 ERLRREKIAERMKNLQELVPN----SNKTDKASMLDEIIDYVK  341 (519)
Q Consensus       303 ER~RRekIner~~aLrsLVP~----~~K~DKASIL~eAI~YIk  341 (519)
                      -||-|||+|-.+..|..|+|-    ..|.||.|||.=++.|++
T Consensus        33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr   75 (712)
T KOG3560|consen   33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR   75 (712)
T ss_pred             chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence            467799999999999999995    489999999999999986

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=81.57  E-value=0.87  Score=52.19  Aligned_cols=42  Identities=38%  Similarity=0.525  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHH
Q 010045          301 IAERLRREKIAERMKNLQELVPN----SNKTDKASMLDEIIDYVKF  342 (519)
Q Consensus       301 ~aER~RRekIner~~aLrsLVP~----~~K~DKASIL~eAI~YIk~  342 (519)
                      -|.|.||-|-|+-|.+|..+||-    ....|||+|+.=||-|+|-
T Consensus        52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl   97 (768)
T KOG3558|consen   52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL   97 (768)
T ss_pred             hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence            45699999999999999999993    2578999999999999874

>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]

Probab=81.17  E-value=1.7  Score=47.60  Aligned_cols=42  Identities=36%  Similarity=0.479  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHH
Q 010045          301 IAERLRREKIAERMKNLQELVPNS----NKTDKASMLDEIIDYVKF  342 (519)
Q Consensus       301 ~aER~RRekIner~~aLrsLVP~~----~K~DKASIL~eAI~YIk~  342 (519)
                      -+.|.||++-|-.|.+|..++|-.    ...||++|+.=+..|||-
T Consensus         7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm   52 (598)
T KOG3559|consen    7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM   52 (598)
T ss_pred             hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence            445899999999999999999953    568999999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	519
4ati_A	118	Mitf:m-Box Complex Length = 118		4e-05

>pdb|4ATI|A Chain A, Mitf:m-Box Complex Length = 118

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 285 KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYV 340
           +AR  A+  Q  D H++ ER RR  I +R+K L  L+P SN  D    K ++L   +DY+
Sbjct: 17  EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYI 76
Query: 341 KFLQ 344
           + LQ
Sbjct: 77  RKLQ 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	519
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	8e-16
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	4e-10
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	4e-08
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	5e-08
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	3e-04
4f3l_A	361	Mclock, circadian locomoter output cycles protein	8e-04

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 71.6 bits (176), Expect = 8e-16
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 291 RRGQATDPHSIAERLRREKIAERMKNLQELVPNSN-KTDKASMLDEIIDYVKFLQLQVKV 349
            RG+    H+  E+  R  I +++  L++LV  +  K +K+++L + IDY++FLQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 350 LSM 352
           L  
Sbjct: 62  LKQ 64

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 55.0 bits (133), Expect = 4e-10
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 297 DPHSIAERLRREKIAERMKNLQELVPNSN------KTDKASMLDEIIDYVKFLQLQVK 348
             H+  ER RR+KI   +  L +++P+S+         K  +L +  DY++ L+    
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 299 HSIAERLRREKIAERMKNLQELVP---NSNKTDKASMLDEIIDYVKFLQLQVKVL 350
           H++ ER RR ++      L++ +P   N+ K  K  +L +   Y+  +Q + + L
Sbjct: 10  HNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKL 64

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 299 HSIAERLRREKIAERMKNLQELVPNSN--KTDKASMLDEIIDYVKFLQLQVKVL 350
           H+  ER RR+ I +   +L++ VP+    K  +A +LD+  +Y+++++ +    
Sbjct: 16  HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTH 69

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 299 HSIAERLRREKIAERMKNLQELVP--NSNKTDKASMLDEIIDYVKFLQLQVKVL 350
           H+  ER RR+ I +   +L++ VP     K  +A +LD+  +Y+++++ +    
Sbjct: 6   HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTH 59

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 69/466 (14%), Positives = 141/466 (30%), Gaps = 144/466 (30%)

Query: 5   LDHYFSSSSWSDVNAKERSSW--DYSEPLQQNQLLPNSIGVYKDDEKNSPVGIAMEGLAA 62
           +D  ++S S    N K R          L +++   N + V   + +N+          A
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-LNVQNAKA------WNA 261

Query: 63  QDTSSFVLGEESEYGI---DKNL---LSEETQYEKDGQNCNGNLS---SMNRSLKLGNVG 113
            + S  +L       +    K +   LS  T       + +  L+     +  LK  +  
Sbjct: 262 FNLSCKIL-------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 114 LQYDPAIPTLGSMNLGSPKQLPLIGEMTTSPSFVDSEHVGGNSSELSDIQRSLRDLQTIS 173
            Q  P       +   +P++L +I E                          +RD     
Sbjct: 315 PQDLPR-----EVLTTNPRRLSIIAES-------------------------IRD----- 339

Query: 174 PSPELWLPTSYEEVSSLSSVIE------QPR-TRGFYLQGATMNHDVDTTGNRYVGMDKI 226
                W    +     L+++IE      +P   R  + + +                  +
Sbjct: 340 -GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP-------TIL 391

Query: 227 LQF--DYLSASIVAKGEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTG 284
           L      +  S V     +L  H  S    +P  +  T+ +PS+                
Sbjct: 392 LSLIWFDVIKSDVMVVVNKL--HKYSLVEKQPKES--TISIPSIYL-------------- 433

Query: 285 KARVRARRGQATDPH-SIAERLRREK-------------------IAERMKNLQELVPNS 324
              ++ +       H SI +     K                   I   +KN++      
Sbjct: 434 --ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE------ 485

Query: 325 NKTDKASMLDEI-IDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQAD 383
              ++ ++   + +D+ +FL+ +++    +   A+G++L  +            L     
Sbjct: 486 -HPERMTLFRMVFLDF-RFLEQKIR-HDSTAWNASGSILNTLQQ----------LKFYKP 532

Query: 384 QGVDISLNSDQIAFEEEVVKLMESNVTKAMQYL-QNKGLCLMPIAL 428
               I  N  +    E +V  +   + K  + L  +K   L+ IAL
Sbjct: 533 Y---ICDNDPKY---ERLVNAILDFLPKIEENLICSKYTDLLRIAL 572

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 4e-06
 Identities = 64/411 (15%), Positives = 124/411 (30%), Gaps = 124/411 (30%)

Query: 123 LGSMNLGSPKQLPLIGEMTTSPSFVDSEHVGGNSSELSDIQRSLRDLQTISPSPELWLPT 182
            G         L +        +FVD+        +  D+Q   + + +     E     
Sbjct: 11  TGEHQYQYKDILSVF-----EDAFVDN-------FDCKDVQDMPKSILS---KEE----- 50

Query: 183 SYEEVSSLSSVIEQPRTRGFYLQGATMNHDVDTTGNRYVG--MDKILQFDY--LSASIVA 238
             + +      +     R F+         + +     V   ++++L+ +Y  L + I  
Sbjct: 51  -IDHIIMSKDAVSGTL-RLFWT--------LLSKQEEMVQKFVEEVLRINYKFLMSPI-- 98

Query: 239 KGEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDP 298
           K EQ  P+     +                      +     N            Q    
Sbjct: 99  KTEQRQPSMMTRMYIE------------------QRDRL--YND----------NQVFAK 128

Query: 299 HSIAERLRREKIAERMKNLQELVPNSN----------KTDKASMLDEIIDYVKFLQLQVK 348
           ++++   R +   +  + L EL P  N          KT  A  LD  + Y    ++  K
Sbjct: 129 YNVS---RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA--LDVCLSYKVQCKMDFK 183

Query: 349 V--LSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAFEEEVVKLME 406
           +  L++    +   VL ++     +     + + ++D   +I L    I  + E+ +L++
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDHSSNIKLRIHSI--QAELRRLLK 239

Query: 407 S-----------NV--TKAMQYLQNKGLC--LM---PIALATAISSGKASSSDTISEENK 448
           S           NV   KA         C  L+      +   +S+   +    IS ++ 
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLS--CKILLTTRFKQVTDFLSAATTTH---ISLDH- 293

Query: 449 FCFSNGLVQSNSSSASSN------SSLPNNGINQMPLNTNIIIGKPIGESI 493
              S  L      S            LP   +   P   +I     I ESI
Sbjct: 294 --HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-----IAESI 337

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 299 HSIAERLRREKIAERMKNLQELVP---NSNKTDKASMLDEIIDYVKFLQLQVKVL 350
           H+  E+ RR  +   ++ L+ LVP   +S++    S+L +   ++K L+   +  
Sbjct: 5   HNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKA 59

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 14/61 (22%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 282 GTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVP-NSNKTDKASMLDEIIDYV 340
           G  +   + +  + +   + +E+ RR++    +K L  ++P N+ K DK+++L + ID++
Sbjct: 1   GAVEEDDKDKAKRVS--RNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFL 58

Query: 341 K 341
           +
Sbjct: 59  R 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	519
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.55
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.53
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.46
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.45
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.45
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.38
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.38
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.38
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.33
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.27
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.18
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.89
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	98.87
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.82
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.73
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.4
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.28
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.66

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.55  E-value=4.5e-15  Score=123.37  Aligned_cols=59  Identities=31%  Similarity=0.528  Sum_probs=55.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPNS-NKTDKASMLDEIIDYVKFLQLQVKVLSMSRL  355 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~~-~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~~  355 (519)
                      ..|+.+||+||++||++|.+|+.|||++ .|+|||+||.+||+||++||.+++.|+.+..
T Consensus         8 ~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~   67 (82)
T 1am9_A            8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENL   67 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999997 8999999999999999999999999997643

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.53  E-value=1.2e-14  Score=128.45  Aligned_cols=61  Identities=34%  Similarity=0.528  Sum_probs=51.7

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhccCCCCC----CCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 010045          293 GQATDPHSIAERLRREKIAERMKNLQELVPNSN----KTDKASMLDEIIDYVKFLQLQVKVLSMS  353 (519)
Q Consensus       293 ~~a~~~H~~aER~RRekIner~~aLrsLVP~~~----K~DKASIL~eAI~YIk~Lq~qVk~Le~~  353 (519)
                      .+.+.+|+.+||+||++||++|.+|+.|||++.    |++|++||.+||+||++||.+++.|+..
T Consensus        25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~   89 (118)
T 4ati_A           25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL   89 (118)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344578999999999999999999999999874    6789999999999999999999999864

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.46  E-value=1.6e-14  Score=114.59  Aligned_cols=53  Identities=28%  Similarity=0.495  Sum_probs=49.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHhccCCCCC------CCChhhHHHHHHHHHHHHHHHHH
Q 010045          296 TDPHSIAERLRREKIAERMKNLQELVPNSN------KTDKASMLDEIIDYVKFLQLQVK  348 (519)
Q Consensus       296 ~~~H~~aER~RRekIner~~aLrsLVP~~~------K~DKASIL~eAI~YIk~Lq~qVk  348 (519)
                      +..|+.+||+||++||+.|.+|+.|||.+.      |+||++||..||+||++||++++
T Consensus         6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A            6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999875      78999999999999999998753

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.45  E-value=9.9e-15  Score=116.43  Aligned_cols=53  Identities=26%  Similarity=0.482  Sum_probs=48.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhhHHHHHHHHHHHHHHHHH
Q 010045          296 TDPHSIAERLRREKIAERMKNLQELVPNS-------NKTDKASMLDEIIDYVKFLQLQVK  348 (519)
Q Consensus       296 ~~~H~~aER~RRekIner~~aLrsLVP~~-------~K~DKASIL~eAI~YIk~Lq~qVk  348 (519)
                      +.+|+.+||+||++||+.|.+|+.|||++       .|.+||+||+.||+||++||++++
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            36899999999999999999999999965       466799999999999999998764

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.45  E-value=8.7e-14  Score=113.90  Aligned_cols=55  Identities=24%  Similarity=0.402  Sum_probs=51.4

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPNS-NKTDKASMLDEIIDYVKFLQLQVKVLS  351 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~~-~K~DKASIL~eAI~YIk~Lq~qVk~Le  351 (519)
                      .+|+.+||+||++||++|.+|+.|||+. .|+||++||+.||+||++||.++.=|+
T Consensus        10 ~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~   65 (71)
T 4h10_B           10 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE   65 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence            5799999999999999999999999975 699999999999999999999987665

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.38  E-value=4.2e-13  Score=111.03  Aligned_cols=58  Identities=24%  Similarity=0.499  Sum_probs=54.0

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPNS--NKTDKASMLDEIIDYVKFLQLQVKVLSMSR  354 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~~--~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~  354 (519)
                      ..|+..||+||++||+.|..|+.+||.+  .|++|++||..||+||++|+.+++.|+.+.
T Consensus         4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~   63 (83)
T 1nkp_B            4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI   63 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999974  899999999999999999999999998653

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.38  E-value=4e-13  Score=110.74  Aligned_cols=58  Identities=24%  Similarity=0.499  Sum_probs=54.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPNS--NKTDKASMLDEIIDYVKFLQLQVKVLSMSR  354 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~~--~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~  354 (519)
                      ..|+..||+||.+||+.|..|+.+||.+  .|++|++||..||+||++|+++++.|+.+.
T Consensus        14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~   73 (80)
T 1hlo_A           14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI   73 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999999999976  699999999999999999999999999764

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.38  E-value=4.4e-14  Score=115.94  Aligned_cols=49  Identities=33%  Similarity=0.470  Sum_probs=46.4

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHH
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPNS----NKTDKASMLDEIIDYVKFLQL  345 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~~----~K~DKASIL~eAI~YIk~Lq~  345 (519)
                      ..|+.+||+||++||+.|.+|+.|||.+    .|+|||+||+.||+||+.|+.
T Consensus        11 ~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A           11 EAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence            6799999999999999999999999976    799999999999999999974

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.33  E-value=1.4e-12  Score=110.05  Aligned_cols=57  Identities=23%  Similarity=0.388  Sum_probs=53.1

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPNS---NKTDKASMLDEIIDYVKFLQLQVKVLSMS  353 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~~---~K~DKASIL~eAI~YIk~Lq~qVk~Le~~  353 (519)
                      ..|+..||+||+.||++|..|+.+||..   .|++|++||.+||+||++|+.+.+.|...
T Consensus         8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~   67 (88)
T 1nkp_A            8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE   67 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999975   69999999999999999999999988754

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.27  E-value=2e-12  Score=106.72  Aligned_cols=56  Identities=27%  Similarity=0.378  Sum_probs=49.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHHh
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPN---SNKT-DKASMLDEIIDYVKFLQLQVKVLSM  352 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~---~~K~-DKASIL~eAI~YIk~Lq~qVk~Le~  352 (519)
                      ..|+..||+||+.||+.|.+|+.+||.   ..|. .|+.||..||+||++||+++++++.
T Consensus         7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~   66 (76)
T 3u5v_A            7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL   66 (76)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            579999999999999999999999995   3555 6889999999999999999999875

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.18  E-value=3.6e-11  Score=99.93  Aligned_cols=58  Identities=21%  Similarity=0.226  Sum_probs=53.5

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPNS---NKTDKASMLDEIIDYVKFLQLQVKVLSMSR  354 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~~---~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~  354 (519)
                      ..|+..||+||..||+.|.+|+.+||..   .|..|++||..|++||++|+++.+.|..++
T Consensus         3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~   63 (80)
T 1nlw_A            3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI   63 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999965   688999999999999999999999998754

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.89  E-value=1.2e-09  Score=109.24  Aligned_cols=51  Identities=25%  Similarity=0.461  Sum_probs=43.2

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCC-CCCCCChhhHHHHHHHHHHHHHHHH
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVP-NSNKTDKASMLDEIIDYVKFLQLQV  347 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP-~~~K~DKASIL~eAI~YIk~Lq~qV  347 (519)
                      ..|+.+||+||++||+.|.+|+.||| ...|+||++||..||+|||.|+..-
T Consensus        14 ~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           14 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            67999999999999999999999999 5679999999999999999998653

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=98.87  E-value=1.9e-09  Score=87.39  Aligned_cols=52  Identities=23%  Similarity=0.390  Sum_probs=47.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPNS--NKTDKASMLDEIIDYVKFLQLQVK  348 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~~--~K~DKASIL~eAI~YIk~Lq~qVk  348 (519)
                      ..|+..||+|+..||+.|..|+.+||..  .|+.|..||..||+||.+|++.++
T Consensus        14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~   67 (68)
T 1mdy_A           14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            4599999999999999999999999964  789999999999999999998753

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.82  E-value=4.6e-09  Score=83.14  Aligned_cols=51  Identities=24%  Similarity=0.295  Sum_probs=47.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 010045          298 PHSIAERLRREKIAERMKNLQELVPNS---NKTDKASMLDEIIDYVKFLQLQVK  348 (519)
Q Consensus       298 ~H~~aER~RRekIner~~aLrsLVP~~---~K~DKASIL~eAI~YIk~Lq~qVk  348 (519)
                      .|+..||+|+..||+.|..|+.+||..   .|+.|..+|..||+||++|++.++
T Consensus         5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            489999999999999999999999964   589999999999999999998764

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.73  E-value=3.3e-09  Score=107.58  Aligned_cols=50  Identities=34%  Similarity=0.456  Sum_probs=46.9

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCC----CCCCCChhhHHHHHHHHHHHHHHH
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVP----NSNKTDKASMLDEIIDYVKFLQLQ  346 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP----~~~K~DKASIL~eAI~YIk~Lq~q  346 (519)
                      .+|+.+||+||+|||+.|.+|+.|||    ...|+||++||..||.|||.|+..
T Consensus        15 ~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           15 EAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred             ccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence            67999999999999999999999999    568999999999999999999853

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.40  E-value=3.6e-07  Score=76.96  Aligned_cols=48  Identities=29%  Similarity=0.445  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 010045          306 RREKIAERMKNLQELVPNS----NKTDKASMLDEIIDYVKFLQLQVKVLSMS  353 (519)
Q Consensus       306 RRekIner~~aLrsLVP~~----~K~DKASIL~eAI~YIk~Lq~qVk~Le~~  353 (519)
                      -|..||++|.+|..|||.+    .|.+|++||..||+||++||+.++.+...
T Consensus         3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~   54 (83)
T 4ath_A            3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL   54 (83)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3889999999999999975    57899999999999999999988877653

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.28  E-value=2.3e-07  Score=75.55  Aligned_cols=45  Identities=24%  Similarity=0.378  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHH
Q 010045          301 IAERLRREKIAERMKNLQELVPNS---NKTDKASMLDEIIDYVKFLQL  345 (519)
Q Consensus       301 ~aER~RRekIner~~aLrsLVP~~---~K~DKASIL~eAI~YIk~Lq~  345 (519)
                      ..||+|+..||+.|..||.+||..   .|+.|..+|..||+||..||.
T Consensus        20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            347889999999999999999965   689999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.66  E-value=7.5e-05  Score=64.56  Aligned_cols=49  Identities=27%  Similarity=0.367  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010045          303 ERLRREKIAERMKNLQELVPNS---NKTDKASMLDEIIDYVKFLQLQVKVLS  351 (519)
Q Consensus       303 ER~RRekIner~~aLrsLVP~~---~K~DKASIL~eAI~YIk~Lq~qVk~Le  351 (519)
                      ||.|=..||+.|..||.+||..   .|+.|..+|.-||+||+.|++.++.-.
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~   84 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL   84 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            5778888999999999999964   688999999999999999999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	519
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	1e-13
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	2e-13
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	2e-12
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	4e-12
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	6e-12
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	1e-11
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	3e-11
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	3e-11

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (155), Expect = 1e-13
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 291 RRGQATDPHSIAERLRREKIAERMKNLQELVPNSN-KTDKASMLDEIIDYVKFLQLQVKV 349
            RG+    H+  E+  R  I +++  L++LV  +  K +K+++L + IDY++FLQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 350 L 350
           L
Sbjct: 62  L 62

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (153), Expect = 2e-13
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 307 REKIAERMKNLQELVPNSN-KTDKASMLDEIIDYVKFLQLQVKVLSM 352
           R  I +++  L++LV  ++ K  K+ +L + IDY+K+LQ     L  
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQ 47

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (148), Expect = 2e-12
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 299 HSIAERLRREKIAERMKNLQELVP--NSNKTDKASMLDEIIDYVKFLQLQVKVLSM 352
           H+  ER RR+ I +   +L++ VP     K  +A +LD+  +Y+++++ +      
Sbjct: 6   HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 4e-12
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 286 ARVRARRGQATDPHSIAERLRREKIAERMKNLQELVP---NSNKTDKASMLDEIIDYVKF 342
             +  +R      H++ ER RR ++      L++ +P   N+ K  K  +L +   Y+  
Sbjct: 1   GHMNVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILS 56

Query: 343 LQLQVKVLSMSR 354
           +Q + + L    
Sbjct: 57  VQAEEQKLISEE 68

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.7 bits (142), Expect = 6e-12
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 285 KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSN--KTDKASMLDEIIDYVKF 342
           K     RR       ++ ER R  K+ E  + L+    ++   +  K  +L   I Y++ 
Sbjct: 6   KTTNADRRKA----ATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEG 61

Query: 343 LQLQVK 348
           LQ  ++
Sbjct: 62  LQALLR 67

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (140), Expect = 1e-11
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 299 HSIAERLRREKIAERMKNLQELVPNSN-------KTDKASMLDEIIDYVKFLQLQVK 348
           H  AE+ RR ++A  +  L  L+P             KA+ ++    Y++ LQ    
Sbjct: 6   HKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (137), Expect = 3e-11
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 299 HSIAERLRREKIAERMKNLQELVPNSN------KTDKASMLDEIIDYVKFLQLQVK 348
           H+  ER RR+KI   +  L +++P+S+         K  +L +  DY++ L+    
Sbjct: 9   HNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 3e-11
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 299 HSIAERLRREKIAERMKNLQELVPNSN---KTDKASMLDEIIDYVKFLQLQVKVLSMSR 354
           H+  E+ RR  +   ++ L+ LVP      +    S+L +   ++K L+   +      
Sbjct: 5   HNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	519
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.44
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.4
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.34
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.3
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.28

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=2.9e-14  Score=111.06  Aligned_cols=51  Identities=29%  Similarity=0.515  Sum_probs=47.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCC-------CCCCChhhHHHHHHHHHHHHHHHH
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPN-------SNKTDKASMLDEIIDYVKFLQLQV  347 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~-------~~K~DKASIL~eAI~YIk~Lq~qV  347 (519)
                      ..|+.+||+||++||+.|..|+.|||+       ..|+|||+||+.||+||++||++|
T Consensus         4 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            679999999999999999999999994       478999999999999999999875

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.8e-14  Score=112.68  Aligned_cols=58  Identities=29%  Similarity=0.515  Sum_probs=54.5

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPNS-NKTDKASMLDEIIDYVKFLQLQVKVLSMSR  354 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~~-~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~  354 (519)
                      ..|+.+||+||++||+.|..|+.|||+. .|+||++||..||+||++|+++++.|+.+.
T Consensus         8 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~   66 (80)
T d1am9a_           8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQEN   66 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999986 699999999999999999999999998754

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=1.9e-14  Score=114.03  Aligned_cols=52  Identities=23%  Similarity=0.390  Sum_probs=48.6

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPNS--NKTDKASMLDEIIDYVKFLQLQVK  348 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~~--~K~DKASIL~eAI~YIk~Lq~qVk  348 (519)
                      ..|+..||+||++||+.|..|+.|||++  .|+||++||..||+||++||++|+
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            5699999999999999999999999985  688999999999999999998875

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3e-13  Score=108.89  Aligned_cols=58  Identities=21%  Similarity=0.226  Sum_probs=53.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPNS---NKTDKASMLDEIIDYVKFLQLQVKVLSMSR  354 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~~---~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~  354 (519)
                      ..|+..||+||++||+.|.+|+.+||++   .|++|++||..||+||++|+.+++.|+.+.
T Consensus         3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~   63 (79)
T d1nlwa_           3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI   63 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999975   589999999999999999999999998654

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.5e-13  Score=107.76  Aligned_cols=57  Identities=25%  Similarity=0.536  Sum_probs=53.3

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPN--SNKTDKASMLDEIIDYVKFLQLQVKVLSMS  353 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~--~~K~DKASIL~eAI~YIk~Lq~qVk~Le~~  353 (519)
                      ..|+..||+||++||+.|..|+++||+  ..|++|++||..||+||++|+++++.|..+
T Consensus         4 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~   62 (83)
T d1nkpb_           4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD   62 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999996  478999999999999999999999999865

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.7e-13  Score=109.20  Aligned_cols=58  Identities=22%  Similarity=0.384  Sum_probs=53.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPNS---NKTDKASMLDEIIDYVKFLQLQVKVLSMSR  354 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~~---~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~  354 (519)
                      ..|+.+||+||++||+.|..|+++||+.   .|++|++||..||+||++|+++++.|+.+.
T Consensus         8 ~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~   68 (88)
T d1nkpa_           8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE   68 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999965   679999999999999999999999998653

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.1e-13  Score=104.51  Aligned_cols=51  Identities=29%  Similarity=0.511  Sum_probs=47.1

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhccCCCC------CCCChhhHHHHHHHHHHHHHHHH
Q 010045          297 DPHSIAERLRREKIAERMKNLQELVPNS------NKTDKASMLDEIIDYVKFLQLQV  347 (519)
Q Consensus       297 ~~H~~aER~RRekIner~~aLrsLVP~~------~K~DKASIL~eAI~YIk~Lq~qV  347 (519)
                      ..|+.+||+||++||+.|.+|+.|||.+      .|++|++||..||+||++||++.
T Consensus         7 ~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           7 AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            5799999999999999999999999964      48999999999999999999763

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5.4e-13  Score=103.43  Aligned_cols=49  Identities=31%  Similarity=0.531  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 010045          307 REKIAERMKNLQELVPNS-NKTDKASMLDEIIDYVKFLQLQVKVLSMSRL  355 (519)
Q Consensus       307 RekIner~~aLrsLVP~~-~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~~  355 (519)
                      |++||++|.+|+.|||++ .|+|||+||.+||+||++||.+++.|++++.
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~   50 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENM   50 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999986 6999999999999999999999999987653