Citrus Sinensis ID: 010053

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
MEEIVSSSSSSYPMPFCQETSPTLQQRLQFIVQNRPEWWVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLFGPVIATMLTKQVNLNSESQLQLPNPTTRNNNNTNNVAPLLDIGMFSGAGAPHHHHHHHQKEWSLEENSKQQTREVSGDVIKKEQLAAGFGRSSSDSGPSDSDGHFVSGFTDINVTSKKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQARKSKVVYNVYDNNQSTGSTIMMPTSSSTTHHLGININIMDVDVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQRMQN
cccccccccccccccccccccHHHHHHHHHHHcccccccEEEEEEEEcccccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEEcccccccccEEEEccccEEEcccccccccHHHHHHHHHHccccEEEEEEccccEEEcccccHHcccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEEccEEEEEEEccccccHHHHHHHHHHccccEEEEEEEEEEccEEEEEEEEEcccccccHHHHHHHHHHHHcc
ccHHEccccccccccccccccHHHHHHHHHHHHcccccEEEEEEEEEcccccccEEEEEcccccccccccccccEcccccccHHHHHHHHHHHHHHHHHHHHHHccccccHccccHcccccEEEEHEHEHEcccccccccccHHHccccEEEEcccccccccHHHHHHHHHHcccEEEEEEEccccEEEEcccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEcccccccHHHHHHHHHHHHcc
meeivssssssypmpfcqetsptLQQRLQFIVQnrpewwvySIFWQplkdvngrlvlswgdgyfrgskDFATRAaagkqgagnepkfgFFLERKKVSKEVQVHfgedmdldrmvdgdvtdgeWYYTVSVTRSfaigdgsvlgrvfssgdyvwltgdhelqLYECERVKEARMHGIQTLVCVSTACGvvelgssdlikeDWSLVQLAKSLFGPVIATMLTKQVnlnsesqlqlpnpttrnnnntnnvaplldigmfsgagaphhhhhhhqkewsleenskqqtREVSGDVIKkeqlaagfgrsssdsgpsdsdghfvsgftdinvtskkrgrkptsgresplnhVEAERQRRERLNHRFYALRsvvpnvskmdKASLLADAVAYIKELRAKVDELEAKLREQARKSKVVYNVYdnnqstgstimmptssstthhlgininIMDVDVKIVGSEAMirvqcpdinypaAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVripeglisEEVIRSAIFQRMQN
meeivssssssypmpFCQETSPTLQQRLQFIVQNRPEWWVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAagkqgagnepkFGFFLERKKVSKEVQvhfgedmdldrmvdGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLFGPVIATMLTKQVNLNSESQLQLPNPTTRNNNNTNNVAPLLDIGMFSGAGAPHHHHHHHQKEWSLEENSKQQTREVSGDVIKKEQLAAGfgrsssdsgpsdsdghfvsgftdinvtskkrgrkptsgresplnhveaERQRRERLNHRfyalrsvvpnvskmdkASLLADAVAYIKELRAKVDELEAKLREqarkskvvynvydnnqstgstiMMPTSSSTTHHLGININIMDVDVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHAsvssvretmLQDVVvripegliseevirsaifqrmqn
MEEIVssssssYPMPFCQETSPTLQQRLQFIVQNRPEWWVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLFGPVIATMLTKQVNLNSESQLQLpnpttrnnnntnnVAPLLDIGMFSGAGAPhhhhhhhQKEWSLEENSKQQTREVSGDVIKKEQLAAGFgrsssdsgpsdsdgHFVSGFTDINVTSKKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQARKSKVVYNVYDNNQstgstimmptsssttHHLGININIMDVDVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQRMQN
***********************LQQRLQFIVQNRPEWWVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAA*********PKFGFFLERKKVSKEVQVHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLFGPVIATMLTKQV************************************************************************************************************************************NHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEA********SKVVYNVYD*****************THHLGININIMDVDVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIF*****
*E***************************FIVQNRPEWWVYSIFWQPLKDVNGRLVLSWGDGYFRGS********************************VQV**********MVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLFGPVIATMLTKQVNLNS***************NTNNVAPLLDIGMFSGAGAPHHHHHHHQKEWSLEENSK**TREVSGDVIKK****************SDSDGHFVS****************************************FYALRSVVPNVSKMDKASLLADAVAYIKELR*******************************************************DVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQRM**
***************FCQETSPTLQQRLQFIVQNRPEWWVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLFGPVIATMLTKQVNLNSESQLQLPNPTTRNNNNTNNVAPLLDIGMFSGAG**************************SGDVIKKEQLAA**************DGHFVSGFTDINVT***********************QRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQARKSKVVYNVYDNNQSTGSTIMMPTSSSTTHHLGININIMDVDVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQRMQN
******************ETSPTLQQRLQFIVQNRPEWWVYSIFWQPLKDVNGRLVLSWGDGYFRGS******A**************FFLERKKVSKEVQVHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLFGPVI************************************************************************************************************************************ERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQ*************************************NIMDVDVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQRMQ*
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MEEIVSSSSSSYPMPFCQETSPTLQQRLQFIVQNRPEWWVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLFGPVIATMLTKQVNLNSESQLQLPNPTTRNNNNTNNVAPLLDIGMFSGAGAPHHHHHHHQKEWSLEENSKQQTREVSGDVIKKEQLAAGFGRSSSDSGPSDSDGHFVSGFTDINVTSKKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLxxxxxxxxxxxxxxxxxxxxxxxxxxxxSKVVYNVYDNNQSTGSTIMMPTSSSTTHHLGININIMDVDVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQRMQN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query519 2.2.26 [Sep-21-2011]
Q9LUK7511 Transcription factor bHLH yes no 0.909 0.923 0.315 1e-53
Q9ZPY8566 Transcription factor ABA- no no 0.909 0.833 0.303 2e-44
Q39204623 Transcription factor MYC2 no no 0.358 0.298 0.481 7e-44
O49687589 Transcription factor MYC4 no no 0.356 0.314 0.450 6e-43
O23090423 Transcription factor bHLH no no 0.335 0.411 0.440 1e-30
Q9LNJ5590 Transcription factor bHLH no no 0.387 0.340 0.352 1e-29
O23487467 Transcription factor bHLH no no 0.310 0.344 0.371 2e-28
Q9FIP9592 Transcription factor ATR2 no no 0.331 0.290 0.352 2e-23
Q8W2F1526 Transcription factor MYC1 no no 0.818 0.807 0.251 6e-22
Q9FT81518 Transcription factor TT8 no no 0.339 0.339 0.326 2e-16
>sp|Q9LUK7|BH028_ARATH Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1 Back     alignment and function desciption
 Score =  211 bits (537), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 172/545 (31%), Positives = 268/545 (49%), Gaps = 73/545 (13%)

Query: 1   MEEIVSSSSSSYPMPFCQETSPTLQQRLQFIVQNRPEWWVYSIFWQP-LKDVNGRLVLSW 59
           +E +++S  S   +P       TL +RL  ++    E W Y+IFW+P   D +G  VL W
Sbjct: 11  IEALLTSDPSPPLLPANLSLETTLPKRLHAVLNGTHEPWSYAIFWKPSYDDFSGEAVLKW 70

Query: 60  GDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKV------SKEVQVHFGEDMDLDRM 113
           GDG + G               GNE K    L RKK        KE + +   +++L  M
Sbjct: 71  GDGVYTG---------------GNEEKTRGRLRRKKTILSSPEEKERRSNVIRELNL--M 113

Query: 114 VDGDV----------------TDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDH 157
           + G+                 TD EW++ VS+T SF  G G + G+ F+S + V +TG  
Sbjct: 114 ISGEAFPVVEDDVSDDDDVEVTDMEWFFLVSMTWSFGNGSG-LAGKAFASYNPVLVTGSD 172

Query: 158 ELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLFGPVIATM 217
            +    C+R K+    G+QT++C+ +  GV+EL S++ I+ +  L    + LFG   +  
Sbjct: 173 LIYGSGCDRAKQGGDVGLQTILCIPSHNGVLELASTEEIRPNSDLFNRIRFLFGG--SKY 230

Query: 218 LTKQVNLNSE-SQLQLPNPTTRNNNNTNNVAPLLDIGMFSGAGAPHHHHHHHQKEWSLEE 276
            +   N NSE    QL +  +       N +P+               +  ++   +   
Sbjct: 231 FSGAPNSNSELFPFQLESSCSSTVTGNPNPSPV---------------YLQNRYNLNFST 275

Query: 277 NSKQQTREVSGDVIK-KEQLAAGFGRSSSDSGPSDSDGHFVSGFTDI--NVTSKKRGRKP 333
           +S    R   GDV+   E +   F   + ++  SD   + V   T +      KKRGRKP
Sbjct: 276 SSSTLARAPCGDVLSFGENVKQSFENRNPNTY-SDQIQNVVPHATVMLEKKKGKKRGRKP 334

Query: 334 TSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDE 393
             GR+ PLNHVEAER RRE+LNHRFYALR+VVPNVSKMDK SLL DAV YI EL++K + 
Sbjct: 335 AHGRDKPLNHVEAERMRREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINELKSKAEN 394

Query: 394 LEAKLREQARKSKVVYNVYDNNQSTGSTIMMPTSSSTTHHLGININIMDVDVKIVGS-EA 452
           +E +      K  +     +  +  G    +P+             +M ++VKI+ S +A
Sbjct: 395 VELE------KHAIEIQFNELKEIAGQRNAIPSVCKYEEKAS---EMMKIEVKIMESDDA 445

Query: 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSA 512
           M+RV+    ++P A+LM+ L DLE  V+HAS+S + + M+Q   V++   +  +E +R  
Sbjct: 446 MVRVESRKDHHPGARLMNALMDLELEVNHASISVMNDLMIQQANVKMGLRIYKQEELRDL 505

Query: 513 IFQRM 517
           +  ++
Sbjct: 506 LMSKI 510

Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2 Back     alignment and function description
>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2 Back     alignment and function description
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1 Back     alignment and function description
>sp|O23090|BH014_ARATH Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1 Back     alignment and function description
>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1 Back     alignment and function description
>sp|O23487|BH003_ARATH Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1 Back     alignment and function description
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1 Back     alignment and function description
>sp|Q8W2F1|BH012_ARATH Transcription factor MYC1 OS=Arabidopsis thaliana GN=BHLH12 PE=1 SV=1 Back     alignment and function description
>sp|Q9FT81|TT8_ARATH Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query519
193734712476 MYC2 [Hevea brasiliensis] 0.907 0.989 0.606 1e-159
255555757479 DNA binding protein, putative [Ricinus c 0.917 0.993 0.580 1e-158
302028371475 LMYC2 [Hevea brasiliensis] 0.905 0.989 0.606 1e-158
224057990471 predicted protein [Populus trichocarpa] 0.899 0.991 0.596 1e-158
301072754476 LMYC1 [Hevea brasiliensis] 0.907 0.989 0.593 1e-154
334200174470 lMYC4 [Hevea brasiliensis] 0.905 1.0 0.599 1e-154
192766596476 MYC1 [Hevea brasiliensis] 0.907 0.989 0.585 1e-152
334200172475 lMYC3 [Hevea brasiliensis] 0.905 0.989 0.591 1e-152
334200176475 lMYC5 [Hevea brasiliensis] 0.911 0.995 0.577 1e-151
224072329465 predicted protein [Populus trichocarpa] 0.890 0.993 0.570 1e-145
>gi|193734712|gb|ACF19982.1| MYC2 [Hevea brasiliensis] Back     alignment and taxonomy information
 Score =  567 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 315/519 (60%), Positives = 383/519 (73%), Gaps = 48/519 (9%)

Query: 1   MEEIVSSSSSSYPMPFCQETSPTLQQRLQFIVQNRPEWWVYSIFWQPLKDVNGRLVLSWG 60
           MEEI S SSSS  M FCQ++SP LQQRLQFI+Q+RPEWWVY+IFWQ  KD  GRLVLSWG
Sbjct: 6   MEEIASPSSSSSFMSFCQDSSPPLQQRLQFILQSRPEWWVYAIFWQASKDATGRLVLSWG 65

Query: 61  DGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVHFGEDMDLDRMVDGDVTD 120
           DG+FRG+K+FA +A   KQ   N+PKFGF LERK ++KE Q  F +DMD+DR+ D DV D
Sbjct: 66  DGHFRGTKEFAAKAC-NKQ---NQPKFGFNLERKMINKESQTLFTDDMDMDRLADVDVID 121

Query: 121 GEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVC 180
            EW+YTVSVTRSFAI DG +LGR F SG ++WLTG++ELQ+Y+CERVKEARMHGIQTLVC
Sbjct: 122 YEWFYTVSVTRSFAIDDG-ILGRTFGSGAFIWLTGNNELQMYDCERVKEARMHGIQTLVC 180

Query: 181 VSTACGVVELGSSDLIKEDWSLVQLAKSLFGPVIATMLTKQVNLNSESQLQLPNPTTRNN 240
           +ST+C VVELGSS+ I +DWSLVQL KSLFG   A +++K+ +   ESQLQ+PN      
Sbjct: 181 ISTSCAVVELGSSNTIDKDWSLVQLCKSLFGGDTACLVSKEPS--HESQLQIPNTC---- 234

Query: 241 NNTNNVAPLLDIGMFSGAGAPHHHHHHHQKEWSLEENSKQQTREVSGDVIKKEQLAAGFG 300
                   LLDIG FS +          QK+ S E+ ++           K ++   G G
Sbjct: 235 --------LLDIGTFSAS----------QKDTSAEKQNEDD---------KNKKDPTGQG 267

Query: 301 RSSSDSGPSDSDGHFVSGFTDINVTSKKRGRKPTSGRESPLNHVEAERQRRERLNHRFYA 360
           RSSSDS  SDS+G+F +G TD     KKRGR   +G+E  LNHVEAERQRRERLNHRFYA
Sbjct: 268 RSSSDSARSDSEGNFAAGNTD---RLKKRGRTQLNGKELTLNHVEAERQRRERLNHRFYA 324

Query: 361 LRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQARKSKVVYNVYDNNQSTGS 420
           LRSVVPNVSKMDKASLLADAV YIKEL+AKVDELE+KL+  ++KSK+  +V D NQST S
Sbjct: 325 LRSVVPNVSKMDKASLLADAVTYIKELKAKVDELESKLQAVSKKSKIT-SVTD-NQSTDS 382

Query: 421 TIMMPTSSSTTHHLGININIMDVDVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVH 480
            I    SSS           M+++VKIVGSEAMIR   PD+NYPAA+LMD LR++EF VH
Sbjct: 383 MIDHIRSSS-----AYKAKAMELEVKIVGSEAMIRFLSPDVNYPAARLMDALREVEFKVH 437

Query: 481 HASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQRMQN 519
           HAS+SS++E +LQDVV R+P+GL +EE++RSAI QRMQN
Sbjct: 438 HASMSSIKEMVLQDVVARVPDGLTNEELVRSAILQRMQN 476

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255555757|ref|XP_002518914.1| DNA binding protein, putative [Ricinus communis] gi|223541901|gb|EEF43447.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302028371|gb|ADK91082.1| LMYC2 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|224057990|ref|XP_002299425.1| predicted protein [Populus trichocarpa] gi|222846683|gb|EEE84230.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|301072754|gb|ADK56287.1| LMYC1 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|334200174|gb|AEG74014.1| lMYC4 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|192766596|gb|ACF05947.1| MYC1 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|334200172|gb|AEG74013.1| lMYC3 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|334200176|gb|AEG74015.1| lMYC5 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|224072329|ref|XP_002303693.1| predicted protein [Populus trichocarpa] gi|222841125|gb|EEE78672.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query519
TAIR|locus:2035609623 MYC2 "AT1G32640" [Arabidopsis 0.356 0.296 0.468 2e-75
TAIR|locus:2141055589 MYC4 "AT4G17880" [Arabidopsis 0.356 0.314 0.445 4.1e-73
TAIR|locus:2178555592 MYC3 "AT5G46760" [Arabidopsis 0.364 0.319 0.434 3.3e-69
UNIPROTKB|Q336P5699 Os10g0575000 "Os10g0575000 pro 0.352 0.261 0.471 2.1e-68
TAIR|locus:2134583423 AT4G00870 "AT4G00870" [Arabido 0.335 0.411 0.429 5.3e-61
TAIR|locus:2172932511 NIG1 "AT5G46830" [Arabidopsis 0.348 0.354 0.424 1.1e-58
TAIR|locus:2035237590 AT1G01260 "AT1G01260" [Arabido 0.150 0.132 0.696 2.9e-44
TAIR|locus:2039094566 AIB "AT2G46510" [Arabidopsis t 0.132 0.121 0.782 6.8e-44
TAIR|locus:2130619467 AT4G16430 "AT4G16430" [Arabido 0.173 0.192 0.565 8.1e-40
TAIR|locus:2118524518 TT8 "AT4G09820" [Arabidopsis t 0.339 0.339 0.326 3.1e-29
TAIR|locus:2035609 MYC2 "AT1G32640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 419 (152.6 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
 Identities = 90/192 (46%), Positives = 128/192 (66%)

Query:   327 KKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKE 386
             KKRGRKP +GRE PLNHVEAERQRRE+LN RFYALR+VVPNVSKMDKASLL DA+AYI E
Sbjct:   437 KKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINE 496

Query:   387 LRAKVDELEA-KLREQARKSKVVYNVYDNNQXXXXXXXXXXXXXXXHHLGININIMDVDV 445
             L++KV + E+ KL+ + +  +V   +    +                 +G     M+++V
Sbjct:   497 LKSKVVKTESEKLQIKNQLEEVKLELA-GRKASASGGDMSSSCSSIKPVG-----MEIEV 550

Query:   446 KIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLIS 505
             KI+G +AMIRV+    N+PAA+LM  L DLE  V+HAS+S V + M+Q   V++   + +
Sbjct:   551 KIIGWDAMIRVESSKRNHPAARLMSALMDLELEVNHASMSVVNDLMIQQATVKMGFRIYT 610

Query:   506 EEVIRSAIFQRM 517
             +E +R+++  ++
Sbjct:   611 QEQLRASLISKI 622
GO:0003677 "DNA binding" evidence=ISS;IDA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=IEP;RCA
GO:0043619 "regulation of transcription from RNA polymerase II promoter in response to oxidative stress" evidence=IMP
GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IMP
GO:2000068 "regulation of defense response to insect" evidence=IMP
GO:0009611 "response to wounding" evidence=IEP;RCA;TAS
GO:0010200 "response to chitin" evidence=IEP
GO:0005515 "protein binding" evidence=IPI
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA;IMP
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009620 "response to fungus" evidence=RCA
GO:0009694 "jasmonic acid metabolic process" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0009269 "response to desiccation" evidence=IEP
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
TAIR|locus:2141055 MYC4 "AT4G17880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178555 MYC3 "AT5G46760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q336P5 Os10g0575000 "Os10g0575000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2134583 AT4G00870 "AT4G00870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172932 NIG1 "AT5G46830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035237 AT1G01260 "AT1G01260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039094 AIB "AT2G46510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130619 AT4G16430 "AT4G16430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118524 TT8 "AT4G09820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LUK7BH028_ARATHNo assigned EC number0.31550.90940.9236yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_I000732
hypothetical protein (471 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query519
pfam14215171 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB trans 4e-64
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 3e-14
smart0035353 smart00353, HLH, helix loop helix domain 2e-13
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 3e-11
>gnl|CDD|222598 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
 Score =  205 bits (525), Expect = 4e-64
 Identities = 80/187 (42%), Positives = 107/187 (57%), Gaps = 16/187 (8%)

Query: 24  LQQRLQFIVQNRPEWWVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGN 83
           LQQRLQ +V++  E W Y+IFWQ   D +G  VL WGDGY+ G        A        
Sbjct: 1   LQQRLQALVES--EQWSYAIFWQLSPDQSG--VLGWGDGYYNGEIKTRKTVAEELG---- 52

Query: 84  EPKFGFFLERKKVSKEVQVHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGR 143
                  L+RKKV +E+        D   +   D+TD EW+Y VS+T SF  G+G + G+
Sbjct: 53  -------LQRKKVLRELYSLLSGSRDAAALSPEDLTDTEWFYLVSMTFSFPPGEG-LPGK 104

Query: 144 VFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLV 203
            F+SG ++WL+G +EL    C R   A+  GIQT+VC+    GVVELGS++ I ED +LV
Sbjct: 105 AFASGSHIWLSGANELDSSNCSRSWLAQSAGIQTIVCIPVPGGVVELGSTEKIPEDLNLV 164

Query: 204 QLAKSLF 210
           Q  KSLF
Sbjct: 165 QHVKSLF 171

This is the N-terminal region of a family of MYB and MYC transcription factors. The DNA-binding HLH domain is further downstream, pfam00010. Members of the MYB and MYC family regulate the biosynthesis of phenylpropanoids in several plant species (DOI:10.1007/s11295-009-0232-y). Length = 171
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 519
PF14215163 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription fa 100.0
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.24
smart0035353 HLH helix loop helix domain. 99.23
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.2
KOG1318411 consensus Helix loop helix transcription factor EB 98.64
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 98.34
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 98.25
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 98.22
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 98.18
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 98.15
cd0492776 ACT_ACR-like_2 Second ACT domain, of a novel type 98.08
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 97.87
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 97.83
KOG4304250 consensus Transcriptional repressors of the hairy/ 97.8
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 97.55
cd0492574 ACT_ACR_2 ACT domain-containing protein which is c 97.53
cd0492868 ACT_TyrKc Uncharacterized, N-terminal ACT domain o 97.49
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 97.46
KOG3960284 consensus Myogenic helix-loop-helix transcription 97.44
KOG0561 373 consensus bHLH transcription factor [Transcription 97.38
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 97.04
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 97.0
PLN0321793 transcription factor ATBS1; Provisional 96.91
KOG4029228 consensus Transcription factor HAND2/Transcription 96.8
PRK05007884 PII uridylyl-transferase; Provisional 96.63
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 96.61
cd0489377 ACT_GcvR_1 ACT domains that comprise the Glycine C 96.18
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 96.07
PRK0019490 hypothetical protein; Validated 96.01
PRK04374869 PII uridylyl-transferase; Provisional 95.96
PRK01759854 glnD PII uridylyl-transferase; Provisional 95.95
PRK00275895 glnD PII uridylyl-transferase; Provisional 95.94
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 95.88
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 95.78
PRK03381774 PII uridylyl-transferase; Provisional 95.69
PRK05092931 PII uridylyl-transferase; Provisional 95.66
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 95.64
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 95.62
PRK03059856 PII uridylyl-transferase; Provisional 95.12
PRK03381 774 PII uridylyl-transferase; Provisional 94.9
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 94.76
PRK05007 884 PII uridylyl-transferase; Provisional 94.64
PRK01759 854 glnD PII uridylyl-transferase; Provisional 94.6
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 94.52
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 94.49
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 94.02
cd0489469 ACT_ACR-like_1 ACT domain-containing protein which 93.91
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 93.79
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 93.54
PRK00275 895 glnD PII uridylyl-transferase; Provisional 93.31
PRK03059 856 PII uridylyl-transferase; Provisional 93.25
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 92.74
PRK05092 931 PII uridylyl-transferase; Provisional 92.42
KOG4447173 consensus Transcription factor TWIST [Transcriptio 92.36
cd0211660 ACT ACT domains are commonly involved in specifica 92.24
KOG3560 712 consensus Aryl-hydrocarbon receptor [Transcription 92.04
PRK04435147 hypothetical protein; Provisional 92.0
PRK04374 869 PII uridylyl-transferase; Provisional 91.48
KOG3910632 consensus Helix loop helix transcription factor [T 91.4
TIGR00655 280 PurU formyltetrahydrofolate deformylase. This mode 90.4
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 90.32
cd0490580 ACT_CM-PDT C-terminal ACT domain of the bifunction 90.2
PRK08577136 hypothetical protein; Provisional 89.75
PRK06027 286 purU formyltetrahydrofolate deformylase; Reviewed 89.43
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 89.02
KOG3558 768 consensus Hypoxia-inducible factor 1/Neuronal PAS 88.97
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 88.93
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 88.91
cd0488075 ACT_AAAH-PDT-like ACT domain of the nonheme iron-d 88.85
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 88.77
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 88.77
cd0490969 ACT_PDH-BS C-terminal ACT domain of the monofuncti 88.36
KOG3559 598 consensus Transcriptional regulator SIM1 [Transcri 88.24
cd0488372 ACT_AcuB C-terminal ACT domain of the Bacillus sub 88.01
cd0488265 ACT_Bt0572_2 C-terminal ACT domain of a novel prot 87.93
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 87.82
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 87.48
PRK13010 289 purU formyltetrahydrofolate deformylase; Reviewed 87.43
PRK13011 286 formyltetrahydrofolate deformylase; Reviewed 87.14
cd0488472 ACT_CBS C-terminal ACT domain of the cystathionine 86.05
cd0490474 ACT_AAAH ACT domain of the nonheme iron-dependent, 83.79
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 83.34
cd0488956 ACT_PDH-BS-like C-terminal ACT domain of the monof 82.6
cd0493190 ACT_PAH ACT domain of the nonheme iron-dependent a 82.48
PRK07334403 threonine dehydratase; Provisional 81.67
COG2844 867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 81.63
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
Probab=100.00  E-value=6.9e-54  Score=402.23  Aligned_cols=163  Identities=45%  Similarity=0.784  Sum_probs=148.6

Q ss_pred             HHHHHHHHhccCCCCceEEEEeecCCCCCCCeeEEecccccCCCcchhhhhhccccCCCCCCcchhhhhhhhhHHhhhhh
Q 010053           24 LQQRLQFIVQNRPEWWVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVH  103 (519)
Q Consensus        24 Lq~~L~~lv~~~~~~WsYAIFWq~s~~~~g~~vL~WgDGy~~g~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~lreL~sl  103 (519)
                      |||+||.||++.  +|+||||||++++++   +|+||||||+|+++.  ++.       .   .+.+.+|+++||+||++
T Consensus         1 Lq~~Lr~lv~~~--~W~YaVFWk~~~~~~---~L~W~DG~~~g~~~~--~~~-------~---~~~~~~~~~~l~~l~~~   63 (163)
T PF14215_consen    1 LQQRLRSLVENS--QWTYAVFWKLSPDNS---VLVWGDGYCNGPKET--RKN-------G---EEEQEQRSKVLRELHSS   63 (163)
T ss_pred             ChHHHHHHhCCC--CCcEEEEeEEcCCCC---eeeEcceeecCCccc--ccc-------h---hhccchhhhHHHHHhhh
Confidence            799999999965  999999999999963   999999999999743  221       1   13456799999999998


Q ss_pred             cCCCccccccCCCCCCcceEEEEEeeeeeeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEec
Q 010053          104 FGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVST  183 (519)
Q Consensus       104 ~~g~~~~~~l~~~dvtd~Ewfyl~sm~~~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~  183 (519)
                      ++    ..++.+++|+|+||||++||+|+|  |+| +|||||++|+|+||++++.++.+.|+|+++||++|||||||||+
T Consensus        64 ~~----~~~~~~~~v~~~e~f~~~s~~~sf--g~G-~~G~a~~sg~~~Wi~~~~~~~~~~~~r~~~aq~~~~~Tiv~IPv  136 (163)
T PF14215_consen   64 FS----SYALSPEEVTDTEWFYLVSMSYSF--GEG-IPGRAAASGQHIWISGANELDSSYCERAWLAQFAGIQTIVCIPV  136 (163)
T ss_pred             cc----ccccccchhHHHHHHhhceeeEEe--cCC-ccEEEeecCccEEEeCCCccccccchhhhhhcccccceEEEEEe
Confidence            87    445678899999999999999999  999 99999999999999999999999999999999999999999999


Q ss_pred             CCceEeeccccccccCHHHHHHHHHHc
Q 010053          184 ACGVVELGSSDLIKEDWSLVQLAKSLF  210 (519)
Q Consensus       184 ~~GVvELGSt~~i~E~~~~v~~vk~~f  210 (519)
                      ++||||||||++|+||+++|++||++|
T Consensus       137 ~~GVvELGSt~~I~Ed~~~v~~vk~~F  163 (163)
T PF14215_consen  137 PNGVVELGSTEKIPEDSNLVQRVKSLF  163 (163)
T ss_pred             cCCEEEeeeeeeeccCHHHHHHHHhhC
Confidence            999999999999999999999999998

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) Back     alignment and domain information
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription] Back     alignment and domain information
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB Back     alignment and domain information
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK13011 formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria Back     alignment and domain information
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate Back     alignment and domain information
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH) Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query519
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 9e-17
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 2e-15
1hlo_A80 Protein (transcription factor MAX); transcriptiona 3e-14
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 4e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 3e-11
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 5e-11
4f3l_A 361 Mclock, circadian locomoter output cycles protein 4e-09
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 5e-07
1a0a_A63 BHLH, protein (phosphate system positive regulator 1e-04
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 2e-04
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 3e-04
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
 Score = 74.3 bits (183), Expect = 9e-17
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 342 NHVEAERQRRERLNHRFYALRSVVP---NVSKMDKASLLADAVAYIKELRAKVDELEAKL 398
            H   ERQRR  L   F+ALR  +P   N  K  K  +L  A AYI  ++A+  +L ++ 
Sbjct: 9   THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68

Query: 399 REQARK 404
               ++
Sbjct: 69  DLLRKR 74
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361 Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63 Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Length = 76 Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Length = 60 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query519
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.58
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.48
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.48
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.46
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.44
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.41
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.4
4ati_A118 MITF, microphthalmia-associated transcription fact 99.4
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.37
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.32
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.28
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 98.95
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 98.93
4f3l_A 361 Mclock, circadian locomoter output cycles protein 98.75
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.55
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.39
4ath_A83 MITF, microphthalmia-associated transcription fact 98.22
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 97.63
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 96.74
1u8s_A 192 Glycine cleavage system transcriptional repressor, 95.31
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 94.94
2nyi_A 195 Unknown protein; protein structure initiative, PSI 94.69
2nyi_A195 Unknown protein; protein structure initiative, PSI 93.91
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 93.58
1u8s_A192 Glycine cleavage system transcriptional repressor, 93.47
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 93.37
1vhm_A195 Protein YEBR; structural genomics, unknown functio 93.16
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 93.08
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 92.52
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 92.39
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 92.28
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 92.04
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 90.95
3p96_A 415 Phosphoserine phosphatase SERB; ssgcid, structural 90.78
3obi_A 288 Formyltetrahydrofolate deformylase; structural gen 90.77
3o1l_A 302 Formyltetrahydrofolate deformylase; structural gen 90.58
3hcy_A151 Putative two-component sensor histidine kinase PR; 90.44
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 90.08
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 90.04
3n0v_A 286 Formyltetrahydrofolate deformylase; formyl transfe 89.47
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 88.77
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 88.21
3lou_A 292 Formyltetrahydrofolate deformylase; structural gen 87.72
2qyb_A181 Membrane protein, putative; GAF domain, domain of 86.79
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 86.5
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 85.7
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 83.12
3ibj_A691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 80.58
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
Probab=99.58  E-value=1.6e-15  Score=126.07  Aligned_cols=65  Identities=22%  Similarity=0.368  Sum_probs=61.3

Q ss_pred             CccchHHHHHHHHHHHHHHHHHhccCCCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010053          340 PLNHVEAERQRRERLNHRFYALRSVVPNV-SKMDKASLLADAVAYIKELRAKVDELEAKLREQARK  404 (519)
Q Consensus       340 ~~~h~~~ER~RR~kln~~f~~LrslvP~~-~k~dKaSIL~~AI~YIk~Lq~~v~~Le~~~~~l~~~  404 (519)
                      +.+|+.+||+||++||++|..|+++||+. .|+||++||.+||+||++|+.+++.|+.+.+.|+..
T Consensus         7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~   72 (82)
T 1am9_A            7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA   72 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999999999999996 899999999999999999999999999999988843
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 519
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 8e-16
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 3e-15
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 4e-15
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 5e-15
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 1e-13
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 2e-13
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 1e-12
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 5e-12
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (172), Expect = 8e-16
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 342 NHVEAERQRRERLNHRFYALRSVVP--NVSKMDKASLLADAVAYIKELRAKVDELEAKLR 399
           +H   ER+RR+ +   F++LR  VP     K  +A +L  A  YI+ +R K    +  + 
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 64

Query: 400 EQARKSK 406
           +  R++ 
Sbjct: 65  DLKRQNA 71
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query519
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.46
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.45
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.41
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.41
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.4
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.32
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.29
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.28
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 96.86
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 96.32
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 95.18
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 92.96
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 92.79
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 91.53
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 90.62
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 89.37
d2f06a270 Hypothetical protein BT0572 {Bacteroides thetaiota 84.48
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.9e-14  Score=115.89  Aligned_cols=63  Identities=22%  Similarity=0.373  Sum_probs=59.3

Q ss_pred             CccchHHHHHHHHHHHHHHHHHhccCCC-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010053          340 PLNHVEAERQRRERLNHRFYALRSVVPN-VSKMDKASLLADAVAYIKELRAKVDELEAKLREQA  402 (519)
Q Consensus       340 ~~~h~~~ER~RR~kln~~f~~LrslvP~-~~k~dKaSIL~~AI~YIk~Lq~~v~~Le~~~~~l~  402 (519)
                      +.+|+.+||+||++||+.|..|++|||+ ..|++|++||..||+||+.|+.+++.|..+...++
T Consensus         7 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk   70 (80)
T d1am9a_           7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4679999999999999999999999998 56999999999999999999999999999988876
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure