Citrus Sinensis ID: 010057
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 519 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZU29 | 577 | Pentatricopeptide repeat- | yes | no | 0.992 | 0.892 | 0.577 | 1e-174 | |
| Q9ZU31 | 182 | Pentatricopeptide repeat- | no | no | 0.319 | 0.912 | 0.497 | 2e-37 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.865 | 0.490 | 0.260 | 1e-31 | |
| Q8GYP6 | 860 | Pentatricopeptide repeat- | no | no | 0.443 | 0.267 | 0.307 | 8e-29 | |
| Q9SSF9 | 855 | Pentatricopeptide repeat- | no | no | 0.443 | 0.269 | 0.316 | 2e-28 | |
| Q940A6 | 838 | Pentatricopeptide repeat- | no | no | 0.820 | 0.508 | 0.239 | 5e-26 | |
| Q9SH26 | 577 | Pentatricopeptide repeat- | no | no | 0.830 | 0.746 | 0.221 | 2e-25 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.784 | 0.514 | 0.235 | 3e-25 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.784 | 0.728 | 0.227 | 3e-25 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.830 | 0.526 | 0.215 | 9e-25 |
| >sp|Q9ZU29|PP139_ARATH Pentatricopeptide repeat-containing protein At2g01390 OS=Arabidopsis thaliana GN=At2g01390/At2g01380 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 612 bits (1579), Expect = e-174, Method: Compositional matrix adjust.
Identities = 299/518 (57%), Positives = 388/518 (74%), Gaps = 3/518 (0%)
Query: 2 RDTISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRG 61
RD +SN+Y ILKYS WDSAQ+ L +L ++WDS+ +N+VLK HPPM+KAWLFFNW ++ +G
Sbjct: 58 RDIVSNIYNILKYSNWDSAQEQLPHLGVRWDSHIINRVLKAHPPMQKAWLFFNWAAQIKG 117
Query: 62 FNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121
F HD FTYTTMLDIFGEA RI SM VF LM+EKG+ ID VTYTS++HW+S++GDVDGA+
Sbjct: 118 FKHDHFTYTTMLDIFGEAGRIQSMYSVFHLMKEKGVLIDTVTYTSLIHWVSSSGDVDGAM 177
Query: 122 NIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181
+WEEM+ C PT+VSYTAYMK+LF + RV+EAT+VYKEM++ + PNC+TYTVLMEYL
Sbjct: 178 RLWEEMRDNGCEPTVVSYTAYMKMLFADGRVEEATEVYKEMLRSRVSPNCHTYTVLMEYL 237
Query: 182 VRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRY 241
V GK EEAL+IF KMQE GVQPDKAACNILI K K GET + +L YMKEN + LRY
Sbjct: 238 VATGKCEEALDIFFKMQEIGVQPDKAACNILIAKALKFGETSFMTRVLVYMKENGVVLRY 297
Query: 242 PVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVL--I 299
P+F EAL+T K A E+D LL +V+ S E + +D E T ++ + D V+ +
Sbjct: 298 PIFVEALETLKAAGESDDLLREVNSHISVESLCSSDIDETPTAEVNDTKNSDDSRVISSV 357
Query: 300 LLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE 359
LL K+NLVA+D LL+ + D++I+LDS V+S IIE NCD R +GA LAF+YS++M ++L+
Sbjct: 358 LLMKQNLVAVDILLNQMRDRNIKLDSFVVSAIIETNCDRCRTEGASLAFDYSLEMGIHLK 417
Query: 360 RTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFS 419
++AYLALIG ++ N PKV E+V+EM KA HSLG Y GA+LIHRLG RRP AA +F
Sbjct: 418 KSAYLALIGNFLRSNELPKVIEVVKEMVKAQHSLGCYQGAMLIHRLGFGRRPRLAADVFD 477
Query: 420 LLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRV 479
LLP+DQK A YTAL+ VY SAGS +KA+KI + M + I PSLGT++VLL+GLEK
Sbjct: 478 LLPDDQKGVAAYTALMDVYISAGSPEKAMKILREMREREIMPSLGTYDVLLSGLEKTSDF 537
Query: 480 S-DAEIYRKEKKSIQADALSKDAVPMEEKICDLLYGGD 516
+ + RKEKKS+ A A ++ V +E+KICDLL+ +
Sbjct: 538 QKEVALLRKEKKSLVASARFRENVHVEDKICDLLFATN 575
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZU31|PP138_ARATH Pentatricopeptide repeat-containing protein At2g01360 OS=Arabidopsis thaliana GN=At2g01360 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 115/167 (68%), Gaps = 1/167 (0%)
Query: 344 ALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIH 403
A LA ++S++M ++LE++AYLAL G ++ N KV ++V+EM K+ HSLGVY GA+LIH
Sbjct: 15 ASLALDWSLEMGIHLEKSAYLALAGNFLRSNELSKVIDVVKEMVKSQHSLGVYHGAMLIH 74
Query: 404 RLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSL 463
LG RRP AA+ LLP+DQK + YTAL+ VY SAGS +KA+KI M + I PSL
Sbjct: 75 MLGFGRRPSLAAEALDLLPDDQKGLSAYTALMDVYISAGSPEKAMKILGEMREREIMPSL 134
Query: 464 GTFNVLLAGLEKLGRVS-DAEIYRKEKKSIQADALSKDAVPMEEKIC 509
GT++VLL+GLEK + RKE+KS+ A ++ V +E+KIC
Sbjct: 135 GTYDVLLSGLEKTSDFQRETSSLRKEQKSLVASTRFREIVHVEDKIC 181
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 123/473 (26%), Positives = 215/473 (45%), Gaps = 24/473 (5%)
Query: 34 YTVNQVLKTHPPMEKAWLFFNWVSR--SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFEL 91
YT N+++ + + +VS+ G + D FTYT+++ + + K + S VF
Sbjct: 219 YTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNE 278
Query: 92 MQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR 151
M KG + V YT ++H L A +D A++++ +MK EC+PT+ +YT +K L ++R
Sbjct: 279 MPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSER 338
Query: 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNI 211
EA ++ KEM + G+ PN +TYTVL++ L K+E+A E+ +M E G+ P+ N
Sbjct: 339 KSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNA 398
Query: 212 LIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDS---LLWQVHPQF 268
LI CK G + ++ M+ +L+ + E ++ + ++ + + L + +
Sbjct: 399 LINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKV 458
Query: 269 SPEFISDNDAVE-------FVTTDIEGPLSIDQGLV--------LI--LLKKKNLVAIDS 311
P+ ++ N ++ F + L D+GLV +I L K K +
Sbjct: 459 LPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACD 518
Query: 312 LLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILI 371
L + K + + + + +I+ C + D A L E + + + ALI L
Sbjct: 519 LFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLC 578
Query: 372 KLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHR-LGSARRPVPAAKIFSLLPEDQKCTA- 429
+ + E+M K G V +LIHR L ++ +L K A
Sbjct: 579 ADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAH 638
Query: 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
TYT I Y G A + M G+ P L T++ L+ G LG+ + A
Sbjct: 639 TYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFA 691
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (323), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 121/231 (52%), Gaps = 1/231 (0%)
Query: 5 ISNVYKILKYSTWD-SAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFN 63
+ NV +L+ W +A++ L+NL ++ D+Y NQVLK A FF W+ R GF
Sbjct: 302 VENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFK 361
Query: 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123
HD TYTTM+ G AK+ ++ + + M G + VTY ++H A ++ A+N+
Sbjct: 362 HDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNV 421
Query: 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183
+ +M+ C P V+Y + I + A D+Y+ M GL P+ +TY+V++ L +
Sbjct: 422 FNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGK 481
Query: 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234
AG A ++F +M + G P+ NI+++ KA + + + R M+
Sbjct: 482 AGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQN 532
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 1/231 (0%)
Query: 5 ISNVYKILKYSTW-DSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFN 63
+ NV IL+ W +A++ L N + D+Y NQVLK A FF W+ R GF
Sbjct: 297 VENVSSILRRFKWGHAAEEALHNFGFRMDAYQANQVLKQMDNYANALGFFYWLKRQPGFK 356
Query: 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123
HD TYTTM+ G AK+ + + + M G + VTY ++H A + A+N+
Sbjct: 357 HDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNV 416
Query: 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183
+ +M+ C P V+Y + I + A D+Y+ M + GL P+ +TY+V++ L +
Sbjct: 417 FNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGK 476
Query: 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234
AG A +F +M G P+ NI+I KA T + + R M+
Sbjct: 477 AGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQN 527
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 119 bits (299), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 110/459 (23%), Positives = 199/459 (43%), Gaps = 33/459 (7%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
+G + D + +TT ++ F + ++ +F M+E G+ + VT+ +V+ L G D
Sbjct: 267 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDE 326
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A E+M + PT+++Y+ +K L R+ +A V KEM ++G PPN Y L++
Sbjct: 327 AFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLID 386
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLAL 239
+ AG +A+EI M G+ + N LI+ CK G+ +L+ M L++
Sbjct: 387 SFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM----LSI 442
Query: 240 RYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDN--DAVEFVTTDIEGPLSIDQG-- 295
+ V + + + + L++ +F E + N +TT I G +
Sbjct: 443 GFNVNQGSFTSV-ICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSK 501
Query: 296 ---LVLILLKKKNLV---AIDSLLSG----------------IMDKSIQLDSAVISTIIE 333
L L K +V ++LL G I+ + +D +T+I
Sbjct: 502 ALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS 561
Query: 334 VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSL 393
C ++ D A + + VK L + Y LI L +N + + ++ + G
Sbjct: 562 GCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLP 621
Query: 394 GVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALIGVYFSAGSADKALKIY 451
VY +++I A R + F + Q T Y LI Y +G AL++
Sbjct: 622 DVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELR 681
Query: 452 KTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKK 490
+ M KGI P+ T+ L+ G+ + RV +A++ +E +
Sbjct: 682 EDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR 720
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/457 (22%), Positives = 193/457 (42%), Gaps = 26/457 (5%)
Query: 34 YTVNQVLKTHPPMEKAWLFFNWVSRSR--GFNHDRFTYTTMLDIFGEAKRISSMKYVFEL 91
+ N++L M+K L + + + G +H+ +TY +++ F +IS +
Sbjct: 86 FEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGK 145
Query: 92 MQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR 151
M + G VT +S+++ + + AV + ++M P +++T + LFL+++
Sbjct: 146 MMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNK 205
Query: 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNI 211
EA + M+QRG PN TY V++ L + G + A + +KM+ A ++ + +
Sbjct: 206 ASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYST 265
Query: 212 LIEKCCKAGETRTIILILRYMKENRL---ALRYPVFKEALQTFKVADENDSLLWQ-VHPQ 267
+I+ CK + + M+ + + Y L ++ + LL + +
Sbjct: 266 VIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERK 325
Query: 268 FSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAV 327
+P ++ N L+ +K+ LV + L ++ +SI D
Sbjct: 326 INPNVVTFN------------------ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 367
Query: 328 ISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMT 387
S++I C H R D A FE + D Y LI K + E+ EM+
Sbjct: 368 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMS 427
Query: 388 KAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALIGVYFSAGSAD 445
+ G LIH AR A +F + D TY L+ G +
Sbjct: 428 QRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLE 487
Query: 446 KALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
KA+ +++ + R + P++ T+N+++ G+ K G+V D
Sbjct: 488 KAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 524
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 102/434 (23%), Positives = 181/434 (41%), Gaps = 27/434 (6%)
Query: 67 FTYTTMLDIFGEAKRISSMKYVFELMQEK---GINIDAVTYTSVMHWLSNAGDVDGAVNI 123
F+Y +L + R + +M + G D V+YT+V++ GD D A +
Sbjct: 159 FSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYST 218
Query: 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183
+ EM + P +V+Y + + L + +A +V M++ G+ P+C TY ++
Sbjct: 219 YHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCS 278
Query: 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPV 243
+G+ +EA+ KM+ GV+PD ++L++ CK G I M + L
Sbjct: 279 SGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITT 338
Query: 244 FKEALQTFKVAD---ENDSLL-WQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLI 299
+ LQ + E LL V P D+ + +DQ ++
Sbjct: 339 YGTLLQGYATKGALVEMHGLLDLMVRNGIHP----DHYVFSILICAYAKQGKVDQAML-- 392
Query: 300 LLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE 359
+ S + + + ++ +I + C R + A+L FE + L+
Sbjct: 393 ------------VFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPG 440
Query: 360 RTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFS 419
Y +LI L N + + E++ EM G L +I R + + K+F
Sbjct: 441 NIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFE 500
Query: 420 LLPE--DQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLG 477
L+ + TY LI Y AG D+A+K+ M G+ P+ T++ L+ G K+
Sbjct: 501 LMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKIS 560
Query: 478 RVSDAEIYRKEKKS 491
R+ DA + KE +S
Sbjct: 561 RMEDALVLFKEMES 574
|
Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 106/465 (22%), Positives = 193/465 (41%), Gaps = 58/465 (12%)
Query: 34 YTVNQVLKTHPPMEKAWLFFNWVSRSR--GFNHDRFTYTTMLDIFGEAKRISSMKYVFEL 91
+ N++L M+K L + + + G +H+ +TY +++ F +IS +
Sbjct: 11 FEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGK 70
Query: 92 MQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR 151
M + G VT +S+++ + + AV + ++M P +++T + LFL+++
Sbjct: 71 MMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNK 130
Query: 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNI 211
EA + M+QRG PN TY V++ L + G + A + +KM+ A ++ D N
Sbjct: 131 ASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNT 190
Query: 212 LIEKCCKAGETRTIILILRYMKENRL---ALRYPVFKEALQTF-KVADENDSLLWQVHPQ 267
+I+ CK + + + M+ + + Y L ++ + +D + L + +
Sbjct: 191 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 250
Query: 268 FSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAV 327
+P ++ N L+ +K+ V + L ++ +SI D
Sbjct: 251 INPNLVTFN------------------ALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFT 292
Query: 328 ISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMT 387
+++I C H R D A FE+ V D + Y LI K E+ EM+
Sbjct: 293 YNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMS 352
Query: 388 KAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKA 447
G L D T TYT LI F G D A
Sbjct: 353 HRG------------------------------LVGD---TVTYTTLIQGLFHDGDCDNA 379
Query: 448 LKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA-EIYRKEKKS 491
K++K M G+ P + T+++LL GL G++ A E++ +KS
Sbjct: 380 QKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKS 424
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (288), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 98/455 (21%), Positives = 195/455 (42%), Gaps = 24/455 (5%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
+G D FTYTT+L F A ++ S +FE M+ G + T+ + + N G
Sbjct: 378 KGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTE 437
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
+ I++E+ + P IV++ + + N E + V+KEM + G P T+ L+
Sbjct: 438 MMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLIS 497
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLAL 239
R G +E+A+ ++ +M +AGV PD + N ++ + G +L M++ R
Sbjct: 498 AYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKP 557
Query: 240 RYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLI 299
+ L + E + +H A E + IE + + LVL+
Sbjct: 558 NELTYCSLLHAYANGKE----IGLMHSL----------AEEVYSGVIEPRAVLLKTLVLV 603
Query: 300 LLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE 359
K L + S + ++ D +++++ + + A +Y +
Sbjct: 604 CSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPS 663
Query: 360 RTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFS 419
Y +L+ + + F K EI+ E+ G + +I+ R A++IFS
Sbjct: 664 MATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFS 723
Query: 420 ------LLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGL 473
++P+ TY IG Y + ++A+ + + M + G P+ T+N ++ G
Sbjct: 724 EMRNSGIVPD----VITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGY 779
Query: 474 EKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKI 508
KL R +A+++ ++ +++ A + + + E+I
Sbjct: 780 CKLNRKDEAKLFVEDLRNLDPHAPKGEDLRLLERI 814
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 519 | ||||||
| 225430854 | 519 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.998 | 0.669 | 0.0 | |
| 297735213 | 656 | unnamed protein product [Vitis vinifera] | 0.998 | 0.789 | 0.655 | 0.0 | |
| 356511257 | 585 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.887 | 0.618 | 0.0 | |
| 255568239 | 472 | pentatricopeptide repeat-containing prot | 0.907 | 0.997 | 0.672 | 0.0 | |
| 357521641 | 687 | Pentatricopeptide repeat-containing prot | 1.0 | 0.755 | 0.611 | 0.0 | |
| 356527892 | 545 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.969 | 0.922 | 0.589 | 1e-178 | |
| 449516876 | 737 | PREDICTED: pentatricopeptide repeat-cont | 0.988 | 0.696 | 0.575 | 1e-173 | |
| 297814374 | 582 | hypothetical protein ARALYDRAFT_322482 [ | 0.992 | 0.884 | 0.579 | 1e-173 | |
| 42568859 | 577 | pentatricopeptide repeat-containing prot | 0.992 | 0.892 | 0.577 | 1e-172 | |
| 449461469 | 1058 | PREDICTED: pentatricopeptide repeat-cont | 0.988 | 0.484 | 0.573 | 1e-171 |
| >gi|225430854|ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01390-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/518 (66%), Positives = 413/518 (79%)
Query: 1 MRDTISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSR 60
MRDTI N+ KIL+Y TWDSAQ+ L+ L I+WDSYTVNQVLK+HPPMEKAWLFFNW SR +
Sbjct: 1 MRDTIGNISKILRYLTWDSAQEQLEKLSIRWDSYTVNQVLKSHPPMEKAWLFFNWASRLK 60
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
GF HD+FTYTTMLDIFGEA+RI SM YVF+ MQEKGI DAVTYTS+MHW SN GD++ A
Sbjct: 61 GFKHDQFTYTTMLDIFGEARRIESMNYVFQQMQEKGIKTDAVTYTSLMHWFSNDGDIERA 120
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180
V +W+EMK K C T+VSYTAYMKILF N RVKEA DVYKEM+Q G PNCYTYTVLME+
Sbjct: 121 VRVWKEMKAKGCCLTVVSYTAYMKILFDNKRVKEAADVYKEMLQSGCAPNCYTYTVLMEH 180
Query: 181 LVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALR 240
L +GKY+ ALEIFS+MQEAGVQPDKA CNILIEK CK G+T I IL YMK+N L LR
Sbjct: 181 LTGSGKYKAALEIFSRMQEAGVQPDKATCNILIEKFCKTGQTWAITQILLYMKDNFLVLR 240
Query: 241 YPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLIL 300
YPV+ EALQT KVA E+D LL QV+P + S + VEF T + +ID+G VL+
Sbjct: 241 YPVYLEALQTLKVAGESDILLRQVNPHLNVGLSSKEEIVEFKETVADVHSTIDRGFVLLF 300
Query: 301 LKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLER 360
L K+N AID LL+G++ K+ +LDS +IS IIEVNC H R +GALLAFEYSVKM +N+ER
Sbjct: 301 LTKQNFYAIDCLLTGMIHKNTRLDSVIISQIIEVNCAHCRINGALLAFEYSVKMGINIER 360
Query: 361 TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSL 420
AYLAL+G+ I+ N+FPKVA+IVE+M +AG SLG+YLGALLI+RLG ARRP AAK+F L
Sbjct: 361 IAYLALMGVFIRANSFPKVADIVEKMVRAGISLGMYLGALLIYRLGCARRPGSAAKVFGL 420
Query: 421 LPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVS 480
LP+DQK TA YTALI YFS+G+ DK LKIYKTM RK IHP+LGT+N+LLAGLEK GR
Sbjct: 421 LPDDQKGTAAYTALISAYFSSGNVDKGLKIYKTMQRKRIHPALGTYNLLLAGLEKKGRAR 480
Query: 481 DAEIYRKEKKSIQADALSKDAVPMEEKICDLLYGGDGV 518
+AEIYRKEKK++ S+D V M+EKIC+LL+ G+ V
Sbjct: 481 EAEIYRKEKKTLHTHGHSQDIVSMDEKICNLLFSGNLV 518
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297735213|emb|CBI17575.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/529 (65%), Positives = 413/529 (78%), Gaps = 11/529 (2%)
Query: 1 MRDTISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSR 60
MRDTI N+ KIL+Y TWDSAQ+ L+ L I+WDSYTVNQVLK+HPPMEKAWLFFNW SR +
Sbjct: 127 MRDTIGNISKILRYLTWDSAQEQLEKLSIRWDSYTVNQVLKSHPPMEKAWLFFNWASRLK 186
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
GF HD+FTYTTMLDIFGEA+RI SM YVF+ MQEKGI DAVTYTS+MHW SN GD++ A
Sbjct: 187 GFKHDQFTYTTMLDIFGEARRIESMNYVFQQMQEKGIKTDAVTYTSLMHWFSNDGDIERA 246
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180
V +W+EMK K C T+VSYTAYMKILF N RVKEA DVYKEM+Q G PNCYTYTVLME+
Sbjct: 247 VRVWKEMKAKGCCLTVVSYTAYMKILFDNKRVKEAADVYKEMLQSGCAPNCYTYTVLMEH 306
Query: 181 LVRAGK-----------YEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILIL 229
L +GK Y+ ALEIFS+MQEAGVQPDKA CNILIEK CK G+T I IL
Sbjct: 307 LTGSGKHLLQFSCIACKYKAALEIFSRMQEAGVQPDKATCNILIEKFCKTGQTWAITQIL 366
Query: 230 RYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGP 289
YMK+N L LRYPV+ EALQT KVA E+D LL QV+P + S + VEF T +
Sbjct: 367 LYMKDNFLVLRYPVYLEALQTLKVAGESDILLRQVNPHLNVGLSSKEEIVEFKETVADVH 426
Query: 290 LSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFE 349
+ID+G VL+ L K+N AID LL+G++ K+ +LDS +IS IIEVNC H R +GALLAFE
Sbjct: 427 STIDRGFVLLFLTKQNFYAIDCLLTGMIHKNTRLDSVIISQIIEVNCAHCRINGALLAFE 486
Query: 350 YSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSAR 409
YSVKM +N+ER AYLAL+G+ I+ N+FPKVA+IVE+M +AG SLG+YLGALLI+RLG AR
Sbjct: 487 YSVKMGINIERIAYLALMGVFIRANSFPKVADIVEKMVRAGISLGMYLGALLIYRLGCAR 546
Query: 410 RPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVL 469
RP AAK+F LLP+DQK TA YTALI YFS+G+ DK LKIYKTM RK IHP+LGT+N+L
Sbjct: 547 RPGSAAKVFGLLPDDQKGTAAYTALISAYFSSGNVDKGLKIYKTMQRKRIHPALGTYNLL 606
Query: 470 LAGLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKICDLLYGGDGV 518
LAGLEK GR +AEIYRKEKK++ S+D V M+EKIC+LL+ G+ V
Sbjct: 607 LAGLEKKGRAREAEIYRKEKKTLHTHGHSQDIVSMDEKICNLLFSGNLV 655
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511257|ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01390-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/521 (61%), Positives = 414/521 (79%), Gaps = 2/521 (0%)
Query: 1 MRDTISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSR 60
MR+ I +Y +LKYS+W+SA+ L NL +KWDSYTVNQVLK+HPPMEKAWLFFNWVS R
Sbjct: 65 MRNVIGKIYNMLKYSSWESAEQDLNNLSMKWDSYTVNQVLKSHPPMEKAWLFFNWVSSLR 124
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
GF HD +TYTTMLDIFGEA R+SSMK++F+ MQEKGI +D+VTYTS+MHWLS++G+ D A
Sbjct: 125 GFKHDHYTYTTMLDIFGEAGRVSSMKHLFQQMQEKGIKLDSVTYTSMMHWLSSSGNFDEA 184
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180
+ +W++MK K +PT+VSYTAY+KILF N RVKEAT YKEMI + PNC+TYTVLM+Y
Sbjct: 185 MQMWDQMKSKGFHPTVVSYTAYIKILFHNQRVKEATRAYKEMISSRVAPNCHTYTVLMDY 244
Query: 181 LVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALR 240
L+ +G+Y+EALEIF KMQEAG QPDKAACNILIE+C K G T + IL+YMKENRL LR
Sbjct: 245 LIGSGQYKEALEIFEKMQEAGAQPDKAACNILIERCSKVGGTEFMTHILQYMKENRLVLR 304
Query: 241 YPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLIL 300
YPVF +AL+ K+A E+D+LL QV+PQF + I A +T + P +ID+ L+ +L
Sbjct: 305 YPVFVKALEALKIAGESDTLLRQVNPQFYMDCIIRKKASNTITVAADCPTNIDKELLFVL 364
Query: 301 LKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLER 360
LK +N+VAID LL+G+MDK I LD V+STIIEVNC H R +GALLAF+YSV M +++ER
Sbjct: 365 LKNRNVVAIDHLLTGMMDKKISLDHKVVSTIIEVNCSHCRPEGALLAFKYSVTMGISIER 424
Query: 361 TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSL 420
T YL+LIG+LI+ N F K+AEIVE+MT+AGHSLG+YL +LLI RLG AR+ A KIF+L
Sbjct: 425 TGYLSLIGLLIRSNMFSKLAEIVEKMTRAGHSLGIYLASLLIFRLGCARKHTLAMKIFNL 484
Query: 421 LPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVS 480
LP++ KC+ATYTALI VYFS ++AL+IYK MC KG P LGT++VL+AGLE+ G+ +
Sbjct: 485 LPDNHKCSATYTALISVYFSVRRVNEALEIYKIMCSKGFCPVLGTYDVLIAGLERNGKYA 544
Query: 481 DAEIYRKEK--KSIQADALSKDAVPMEEKICDLLYGGDGVL 519
+AE YRK K KS++A++ S+++V +E KIC+LL+ D VL
Sbjct: 545 EAEHYRKAKKRKSLRANSGSQESVCIEGKICNLLFSVDVVL 585
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568239|ref|XP_002525094.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535553|gb|EEF37221.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/473 (67%), Positives = 388/473 (82%), Gaps = 2/473 (0%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
MEKAW+FFNWVS +GF HD+FTYTTMLDIFGEA RI SM YVF+ MQEK I ID VTYT
Sbjct: 1 MEKAWIFFNWVSGFQGFKHDQFTYTTMLDIFGEAGRIESMNYVFKQMQEKDIKIDTVTYT 60
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
S+MHWLS GDVDGA+ IWEEMK K Y T+VSYTA+MKILF N RVKEAT++YKEM++
Sbjct: 61 SLMHWLSRNGDVDGAIKIWEEMKEKGLYLTVVSYTAFMKILFDNKRVKEATNIYKEMLEC 120
Query: 166 GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTI 225
G+PPNC+TYTVLMEYLV +GK +EALEIF KMQEAGVQPDKA CNIL+E+CC+AGET T+
Sbjct: 121 GIPPNCHTYTVLMEYLVVSGKCQEALEIFKKMQEAGVQPDKAMCNILVERCCEAGETNTM 180
Query: 226 ILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTD 285
IL+YMKEN LALRYP+F EAL+ ++A E D+LL QV+P + E I+++D+ EF T+
Sbjct: 181 TPILQYMKENHLALRYPIFLEALKILRIAGECDALLKQVNPHCAAESINNDDSSEFTTSA 240
Query: 286 IEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGAL 345
P ID+GL+LILL+K+NLVA+D LL+G++DK++ L+S ++STIIEVNC R D AL
Sbjct: 241 YNDP--IDKGLLLILLRKQNLVAVDHLLAGVLDKNMVLESWIVSTIIEVNCSQCRPDSAL 298
Query: 346 LAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRL 405
+AFEYS+++ ++LERTAYLALIGI+I+ NT V EIV+E + GHSLG+YL ALLIHRL
Sbjct: 299 MAFEYSMRVGIDLERTAYLALIGIMIRSNTSLWVLEIVKETIRVGHSLGLYLSALLIHRL 358
Query: 406 GSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGT 465
GSARRP AAKIF LLP++QKCTATYTA+IGVYFSAGSA KALKIYKTM + I+PSLGT
Sbjct: 359 GSARRPNCAAKIFDLLPDEQKCTATYTAMIGVYFSAGSAAKALKIYKTMKKNSINPSLGT 418
Query: 466 FNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKICDLLYGGDGV 518
+NVLLAGLEK GRV + + +RKEK+S+ AD +PMEEKICDLL+ G V
Sbjct: 419 YNVLLAGLEKSGRVCETDNFRKEKRSLMADGNRLSCLPMEEKICDLLFAGSLV 471
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357521641|ref|XP_003631109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355525131|gb|AET05585.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/520 (61%), Positives = 409/520 (78%), Gaps = 1/520 (0%)
Query: 1 MRDTISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSR 60
MR+ I N+Y+ LKYS+WDSAQ L+NLP+KWDSYTVNQVLK+HPPMEKAWLFFNW SR +
Sbjct: 168 MRNVIGNIYRTLKYSSWDSAQQQLQNLPLKWDSYTVNQVLKSHPPMEKAWLFFNWASRLK 227
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
GF HD+FTYTTMLDIFGEA RISSMK+VF M EKGI ID+VTYTS+MHWLS +G+VD A
Sbjct: 228 GFKHDQFTYTTMLDIFGEAGRISSMKHVFNQMHEKGIKIDSVTYTSMMHWLSTSGNVDEA 287
Query: 121 VNIWEEMKLKEC-YPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
+ +W+EMK K C YPT+VSYTA++KILF N RVKEAT +YKEM+ G PNCYTYTVLM+
Sbjct: 288 IALWDEMKSKGCCYPTVVSYTAFIKILFDNHRVKEATAIYKEMLHNGCVPNCYTYTVLMD 347
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLAL 239
+L+ +GK +EALEIF KMQEAGV+PDKAACNILI+KC K T + IL+YMKENRL L
Sbjct: 348 HLIASGKCKEALEIFQKMQEAGVEPDKAACNILIDKCSKVCGTVFMTKILQYMKENRLVL 407
Query: 240 RYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLI 299
RY V+ +A++ K+A E+D+LL QV+P F + A + T + +ID+ L+L+
Sbjct: 408 RYRVYVKAMEALKIAGESDTLLRQVNPHFYLDSSFKEKAHDRNTVIADSSSNIDKELLLV 467
Query: 300 LLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE 359
LL+ +N+VAID L+ G+MDK I +D+ VISTIIEVNC+ R DGALLAF YSV M +++E
Sbjct: 468 LLRNRNVVAIDHLIQGMMDKKISVDNKVISTIIEVNCNCCRPDGALLAFNYSVTMGISIE 527
Query: 360 RTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFS 419
RT YL+L+G+L + N F K+ EIV EMT+AGHSLG+YL +LLI+RLG AR+ A KIF+
Sbjct: 528 RTGYLSLVGLLNRSNMFSKLVEIVGEMTRAGHSLGIYLASLLIYRLGCARQLSIALKIFN 587
Query: 420 LLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRV 479
LLP++ KC ATYTALI +YFSA +KAL+IYK MC+KG P+ GTFN+L+AGLE+ GR
Sbjct: 588 LLPDNHKCVATYTALISIYFSARRVNKALEIYKIMCQKGNCPTSGTFNILVAGLERNGRF 647
Query: 480 SDAEIYRKEKKSIQADALSKDAVPMEEKICDLLYGGDGVL 519
S+A ++RK KK++ ++ S++ + E +ICDLL+ GD +L
Sbjct: 648 SEAGVHRKAKKNLNSNIGSQENLSTEGRICDLLFAGDVIL 687
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527892|ref|XP_003532540.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g01390-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/521 (58%), Positives = 392/521 (75%), Gaps = 18/521 (3%)
Query: 1 MRDTISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSR 60
MR+ I +YK LKYS+W+SA+ L N+ ++WDSYTVNQVLK+HPPMEKAWLFFNW S R
Sbjct: 41 MRNVIGKIYKTLKYSSWESAEQELNNMSLRWDSYTVNQVLKSHPPMEKAWLFFNWASSLR 100
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
GF HD +TYTTMLDIFGEA R+SS+K +D+VTYTS+MHWLS++G+VD A
Sbjct: 101 GFKHDHYTYTTMLDIFGEAGRVSSIK------------LDSVTYTSMMHWLSSSGNVDQA 148
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180
+ +W ++K K T+VSYTAY+KILF N R+KEAT VYKEMI G+ PNC+TYTVLM+Y
Sbjct: 149 MQMWHQIKSK----TVVSYTAYIKILFHNRRLKEATRVYKEMISSGVAPNCHTYTVLMDY 204
Query: 181 LVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALR 240
L+ +GK +EALEIF KMQEAG QPDKAACNILI++C K G T + IL+YMKENRL LR
Sbjct: 205 LIASGKCKEALEIFEKMQEAGAQPDKAACNILIQRCSKVGGTEFMTHILQYMKENRLVLR 264
Query: 241 YPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLIL 300
YPVF EAL+ K + E D+LL QV+PQF + + DA +T + P +ID L+ +L
Sbjct: 265 YPVFVEALEALKXSGETDTLLRQVNPQFYMDCSTRKDASNSITVAADCPTNIDNELLFVL 324
Query: 301 LKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLER 360
LK +N+VAID LL+G+MDK I L+ V+STIIEVNC H R GALLAF+YSV M +++ER
Sbjct: 325 LKNRNVVAIDHLLTGMMDKKIYLEHKVVSTIIEVNCSHCRPKGALLAFKYSVTMGISIER 384
Query: 361 TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSL 420
T YL+LIG+LI+ N F K+ EIVEEMT+AG+SLG YL +LL H LG A++ A KIF+L
Sbjct: 385 TGYLSLIGLLIRSNMFSKLVEIVEEMTRAGYSLGTYLASLLXHXLGCAKKHTLAMKIFNL 444
Query: 421 LPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVS 480
LP++ KCTAT+TALI VYFS KAL+IYK MC KG P LGT++VL+AG E G+ +
Sbjct: 445 LPDNHKCTATFTALISVYFSVRRVTKALEIYKIMCTKGFCPVLGTYDVLIAGFETNGKYA 504
Query: 481 DAEIYRKEK--KSIQADALSKDAVPMEEKICDLLYGGDGVL 519
+AE YRK K KS+ A++ S+++V +E KIC+LL+ D VL
Sbjct: 505 EAEHYRKAKKSKSLHANSGSQESVCIEGKICNLLFSVDVVL 545
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449516876|ref|XP_004165472.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01390-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 296/514 (57%), Positives = 382/514 (74%), Gaps = 1/514 (0%)
Query: 2 RDTISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRG 61
RDT+ N+ IL+ +W SAQ L+ LPI+WDSY +NQVLKTHPP+EK WLFFNW S +
Sbjct: 137 RDTVRNICNILRNCSWASAQKHLEMLPIRWDSYLINQVLKTHPPLEKTWLFFNWASTLQV 196
Query: 62 FNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121
F HD++TYTTMLDIFGEA RISSM YVF+ M+EKGI IDAVTYTS+MHW SN+GDVDGA+
Sbjct: 197 FKHDQYTYTTMLDIFGEAGRISSMNYVFQQMKEKGIKIDAVTYTSLMHWRSNSGDVDGAI 256
Query: 122 NIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181
+W+EMK C+PT+VSYTAY+KIL N ++ EAT YK+M+Q GL PNC TYT+LMEYL
Sbjct: 257 KVWKEMKANGCHPTVVSYTAYIKILLDNGQINEATATYKKMLQSGLSPNCCTYTILMEYL 316
Query: 182 VRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRY 241
+ GK +EAL+IFSKMQ+AGV PDKAACNILI+KCCK+GE + IL +MKENR LRY
Sbjct: 317 IGEGKCKEALDIFSKMQDAGVYPDKAACNILIQKCCKSGERLVMTQILEFMKENRFVLRY 376
Query: 242 PVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILL 301
PVF EA +T K + +LL QV+P E IS + V+ T P ++D L+ +LL
Sbjct: 377 PVFVEAHETLKSCSVSYALLKQVNPHMEIESISKGEVVDVSTGSNTVPPNVDNELLAMLL 436
Query: 302 KKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERT 361
K L A+D +L GI+DK+IQLDS++I +IIEVNC R + ALLAF+Y +K +N++R
Sbjct: 437 KDNKLTAVDHMLIGIVDKNIQLDSSIIYSIIEVNCKSNRPNSALLAFDYCLKNSVNIKRK 496
Query: 362 AYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLL 421
YL LIGILI+ + +PK+ EIV+EM GH LG+Y L+++ LG A +P A K+F++L
Sbjct: 497 LYLDLIGILIRSSIYPKLLEIVQEMYTQGHCLGLYHATLILYSLGKAGKPQYARKVFNML 556
Query: 422 PEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSD 481
PE+ KCTATYTAL+ YFSAGS+ K LKI++TM +KG PSLGT+NVLL GL K GR +
Sbjct: 557 PEELKCTATYTALVDGYFSAGSSGKGLKIFETMRKKGFTPSLGTYNVLLNGLAKNGRGVE 616
Query: 482 AEIYRKEKKSIQADALSK-DAVPMEEKICDLLYG 514
IYR+EKKS + S+ + + +E+ICDLL+G
Sbjct: 617 LNIYRREKKSFEISHHSRLNTILDDERICDLLFG 650
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297814374|ref|XP_002875070.1| hypothetical protein ARALYDRAFT_322482 [Arabidopsis lyrata subsp. lyrata] gi|297320908|gb|EFH51329.1| hypothetical protein ARALYDRAFT_322482 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 301/519 (57%), Positives = 391/519 (75%), Gaps = 4/519 (0%)
Query: 2 RDTISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRG 61
RD +SN+Y ILKYSTW+SAQ+ L +L ++WDS+ +N+VLK HPPM+KAWLFFNW S+ +G
Sbjct: 62 RDIVSNIYNILKYSTWESAQEQLPHLGVRWDSHVINRVLKAHPPMQKAWLFFNWASQIKG 121
Query: 62 FNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121
F HD FTYTTMLDIFGEA RI SM VF LM+EKG+ ID VTYTS++HW+S++GDVDGA+
Sbjct: 122 FKHDHFTYTTMLDIFGEAGRIQSMYSVFHLMKEKGVLIDTVTYTSLIHWVSSSGDVDGAM 181
Query: 122 NIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181
+WEEM+ C PT+VSYTAYMKILF + RV+EAT+VYK+M++ + PNC+TYTVLMEYL
Sbjct: 182 RLWEEMRDDGCEPTVVSYTAYMKILFADGRVEEATEVYKDMLRSRVSPNCHTYTVLMEYL 241
Query: 182 VRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRY 241
V GK EEAL+IF KMQE GVQPDK ACNILI K CK GET + IL YMKEN + LRY
Sbjct: 242 VGTGKCEEALDIFFKMQEIGVQPDKPACNILIVKACKFGETSFMARILVYMKENGVVLRY 301
Query: 242 PVFKEALQTFKVADENDSLLWQVHPQFSPE-FISDNDAVEFVTTDIEGPLSIDQGLVL-- 298
P+F EA +T K A E+D LL QV+ S E + D E TT+++ S D V+
Sbjct: 302 PIFLEASETLKAAGESDDLLRQVNSHISAESLLCSKDIDETPTTEVDDTNSSDDSRVISS 361
Query: 299 ILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNL 358
+LL K+NLV++D +L+ ++D++I+LDS+V+S I+E NCD R +GA LA EYS KM ++L
Sbjct: 362 VLLMKQNLVSVDLILNQMIDRNIKLDSSVVSAIVETNCDRCRTEGASLALEYSSKMGIHL 421
Query: 359 ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIF 418
E++A+LALIG +++N PKV E+V+EM KA HSLG Y GA+LIHRLG +RP AA++F
Sbjct: 422 EKSAHLALIGHFLRVNELPKVIEVVKEMLKAQHSLGCYQGAMLIHRLGFGKRPRLAAEVF 481
Query: 419 SLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGR 478
LLP+DQK A YTAL+ VY SAGS +KA+KI M + I PSLGT+NVLL+GLEK+
Sbjct: 482 DLLPDDQKGVAAYTALMDVYISAGSPEKAMKILGEMREREIMPSLGTYNVLLSGLEKISE 541
Query: 479 VS-DAEIYRKEKKSIQADALSKDAVPMEEKICDLLYGGD 516
+A + RKEKK + A A ++ V +E+KICDLL+ +
Sbjct: 542 FQKEAALLRKEKKILVATARFREIVHVEDKICDLLFATN 580
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42568859|ref|NP_178248.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218546783|sp|Q9ZU29.2|PP139_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01390 gi|330250351|gb|AEC05445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1579), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/518 (57%), Positives = 388/518 (74%), Gaps = 3/518 (0%)
Query: 2 RDTISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRG 61
RD +SN+Y ILKYS WDSAQ+ L +L ++WDS+ +N+VLK HPPM+KAWLFFNW ++ +G
Sbjct: 58 RDIVSNIYNILKYSNWDSAQEQLPHLGVRWDSHIINRVLKAHPPMQKAWLFFNWAAQIKG 117
Query: 62 FNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121
F HD FTYTTMLDIFGEA RI SM VF LM+EKG+ ID VTYTS++HW+S++GDVDGA+
Sbjct: 118 FKHDHFTYTTMLDIFGEAGRIQSMYSVFHLMKEKGVLIDTVTYTSLIHWVSSSGDVDGAM 177
Query: 122 NIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181
+WEEM+ C PT+VSYTAYMK+LF + RV+EAT+VYKEM++ + PNC+TYTVLMEYL
Sbjct: 178 RLWEEMRDNGCEPTVVSYTAYMKMLFADGRVEEATEVYKEMLRSRVSPNCHTYTVLMEYL 237
Query: 182 VRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRY 241
V GK EEAL+IF KMQE GVQPDKAACNILI K K GET + +L YMKEN + LRY
Sbjct: 238 VATGKCEEALDIFFKMQEIGVQPDKAACNILIAKALKFGETSFMTRVLVYMKENGVVLRY 297
Query: 242 PVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVL--I 299
P+F EAL+T K A E+D LL +V+ S E + +D E T ++ + D V+ +
Sbjct: 298 PIFVEALETLKAAGESDDLLREVNSHISVESLCSSDIDETPTAEVNDTKNSDDSRVISSV 357
Query: 300 LLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE 359
LL K+NLVA+D LL+ + D++I+LDS V+S IIE NCD R +GA LAF+YS++M ++L+
Sbjct: 358 LLMKQNLVAVDILLNQMRDRNIKLDSFVVSAIIETNCDRCRTEGASLAFDYSLEMGIHLK 417
Query: 360 RTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFS 419
++AYLALIG ++ N PKV E+V+EM KA HSLG Y GA+LIHRLG RRP AA +F
Sbjct: 418 KSAYLALIGNFLRSNELPKVIEVVKEMVKAQHSLGCYQGAMLIHRLGFGRRPRLAADVFD 477
Query: 420 LLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRV 479
LLP+DQK A YTAL+ VY SAGS +KA+KI + M + I PSLGT++VLL+GLEK
Sbjct: 478 LLPDDQKGVAAYTALMDVYISAGSPEKAMKILREMREREIMPSLGTYDVLLSGLEKTSDF 537
Query: 480 S-DAEIYRKEKKSIQADALSKDAVPMEEKICDLLYGGD 516
+ + RKEKKS+ A A ++ V +E+KICDLL+ +
Sbjct: 538 QKEVALLRKEKKSLVASARFRENVHVEDKICDLLFATN 575
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461469|ref|XP_004148464.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01390-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1571), Expect = e-171, Method: Compositional matrix adjust.
Identities = 295/514 (57%), Positives = 380/514 (73%), Gaps = 1/514 (0%)
Query: 2 RDTISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRG 61
RDT+ N+ IL+ +W SAQ L+ LPI+WDSY +NQVLKTHPP+EK WLFFNW S +
Sbjct: 118 RDTVRNICNILRNCSWASAQKHLEMLPIRWDSYLINQVLKTHPPLEKTWLFFNWASTLQV 177
Query: 62 FNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121
F HD++TYTTMLDIFGEA RISSM YVF+ M+EKGI IDAVTYTS+MHW SN+GDVDGA+
Sbjct: 178 FKHDQYTYTTMLDIFGEAGRISSMNYVFQQMKEKGIKIDAVTYTSLMHWRSNSGDVDGAI 237
Query: 122 NIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181
+W+EMK C+PT+VSYTAY+KIL N ++ EAT YK+M+Q GL PNC YT+LMEYL
Sbjct: 238 KLWKEMKANGCHPTVVSYTAYIKILLDNGQINEATATYKKMLQSGLSPNCCIYTILMEYL 297
Query: 182 VRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRY 241
+ GK +EAL+IFSKMQ+AGV PDKAACNILI+KCCK+GE + IL +MKENR LRY
Sbjct: 298 IGEGKCKEALDIFSKMQDAGVYPDKAACNILIQKCCKSGERLVMTQILEFMKENRFVLRY 357
Query: 242 PVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILL 301
PVF EA +T K + +LL QV+P E IS + V+ T P ++D L+ +LL
Sbjct: 358 PVFVEAHETLKSCSVSYALLKQVNPHMEIESISKGEVVDVSTGSNTVPPNVDNELLAMLL 417
Query: 302 KKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERT 361
K L A+D +L GI+DK+IQLDS++I +IIEVNC R + ALLAF+Y +K +N++R
Sbjct: 418 KDNKLTAVDHMLIGIVDKNIQLDSSIIYSIIEVNCKSNRPNSALLAFDYCLKNSVNIKRK 477
Query: 362 AYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLL 421
YL LIGILI+ + +PK+ EIV+EM GH LG+Y L++ LG A +P A K+F++L
Sbjct: 478 LYLDLIGILIRSSIYPKLLEIVQEMYTQGHCLGLYHATLILCSLGKAGKPQYARKVFNML 537
Query: 422 PEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSD 481
PE+ KCTATYTAL+ YFSAGS+ K LKI++TM +KG PSLGT+NVLL GL K GR +
Sbjct: 538 PEELKCTATYTALVDGYFSAGSSGKGLKIFETMRKKGFTPSLGTYNVLLNGLAKNGRGVE 597
Query: 482 AEIYRKEKKSIQADALSK-DAVPMEEKICDLLYG 514
IYR+EKKS + S+ + + +E+ICDLL+G
Sbjct: 598 LNIYRREKKSFEISHHSRLNTILDDERICDLLFG 631
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 519 | ||||||
| TAIR|locus:2038841 | 577 | EMB3111 "EMBRYO DEFECTIVE 3111 | 0.986 | 0.887 | 0.566 | 8.2e-154 | |
| TAIR|locus:2027212 | 855 | AT1G74750 [Arabidopsis thalian | 0.441 | 0.267 | 0.317 | 1.3e-29 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.838 | 0.475 | 0.253 | 1.5e-26 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.329 | 0.196 | 0.302 | 3e-24 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.391 | 0.269 | 0.262 | 6.5e-24 | |
| TAIR|locus:2093472 | 642 | AT3G16010 [Arabidopsis thalian | 0.431 | 0.348 | 0.237 | 2.7e-23 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.845 | 0.760 | 0.222 | 3.9e-23 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.816 | 0.709 | 0.234 | 7.3e-23 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.774 | 0.361 | 0.259 | 3.3e-22 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.371 | 0.235 | 0.255 | 4e-22 |
| TAIR|locus:2038841 EMB3111 "EMBRYO DEFECTIVE 3111" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1500 (533.1 bits), Expect = 8.2e-154, P = 8.2e-154
Identities = 292/515 (56%), Positives = 377/515 (73%)
Query: 2 RDTISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRG 61
RD +SN+Y ILKYS WDSAQ+ L +L ++WDS+ +N+VLK HPPM+KAWLFFNW ++ +G
Sbjct: 58 RDIVSNIYNILKYSNWDSAQEQLPHLGVRWDSHIINRVLKAHPPMQKAWLFFNWAAQIKG 117
Query: 62 FNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121
F HD FTYTTMLDIFGEA RI SM VF LM+EKG+ ID VTYTS++HW+S++GDVDGA+
Sbjct: 118 FKHDHFTYTTMLDIFGEAGRIQSMYSVFHLMKEKGVLIDTVTYTSLIHWVSSSGDVDGAM 177
Query: 122 NIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181
+WEEM+ C PT+VSYTAYMK+LF + RV+EAT+VYKEM++ + PNC+TYTVLMEYL
Sbjct: 178 RLWEEMRDNGCEPTVVSYTAYMKMLFADGRVEEATEVYKEMLRSRVSPNCHTYTVLMEYL 237
Query: 182 VRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRY 241
V GK EEAL+IF KMQE GVQPDKAACNILI K K GET + +L YMKEN + LRY
Sbjct: 238 VATGKCEEALDIFFKMQEIGVQPDKAACNILIAKALKFGETSFMTRVLVYMKENGVVLRY 297
Query: 242 PVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGXXXXXX 301
P+F EAL+T K A E+D LL +V+ S E + +D E T ++ + D
Sbjct: 298 PIFVEALETLKAAGESDDLLREVNSHISVESLCSSDIDETPTAEVNDTKNSDDSRVISSV 357
Query: 302 XXXXXX--AIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE 359
A+D LL+ + D++I+LDS V+S IIE NCD R +GA LAF+YS++M ++L+
Sbjct: 358 LLMKQNLVAVDILLNQMRDRNIKLDSFVVSAIIETNCDRCRTEGASLAFDYSLEMGIHLK 417
Query: 360 RTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFS 419
++AYLALIG ++ N PKV E+V+EM KA HSLG Y GA+LIHRLG RRP AA +F
Sbjct: 418 KSAYLALIGNFLRSNELPKVIEVVKEMVKAQHSLGCYQGAMLIHRLGFGRRPRLAADVFD 477
Query: 420 LLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRV 479
LLP+DQK A YTAL+ VY SAGS +KA+KI + M + I PSLGT++VLL+GLEK
Sbjct: 478 LLPDDQKGVAAYTALMDVYISAGSPEKAMKILREMREREIMPSLGTYDVLLSGLEKTSDF 537
Query: 480 S-DAEIYRKEKKSIQADALSKDAVPMEEKICDLLY 513
+ + RKEKKS+ A A ++ V +E+KICDLL+
Sbjct: 538 QKEVALLRKEKKSLVASARFRENVHVEDKICDLLF 572
|
|
| TAIR|locus:2027212 AT1G74750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 309 (113.8 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 73/230 (31%), Positives = 114/230 (49%)
Query: 5 ISNVYKILKYSTWD-SAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFN 63
+ NV IL+ W +A++ L N + D+Y NQVLK A FF W+ R GF
Sbjct: 297 VENVSSILRRFKWGHAAEEALHNFGFRMDAYQANQVLKQMDNYANALGFFYWLKRQPGFK 356
Query: 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123
HD TYTTM+ G AK+ + + + M G + VTY ++H A + A+N+
Sbjct: 357 HDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNV 416
Query: 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183
+ +M+ C P V+Y + I + A D+Y+ M + GL P+ +TY+V++ L +
Sbjct: 417 FNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGK 476
Query: 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMK 233
AG A +F +M G P+ NI+I KA T + + R M+
Sbjct: 477 AGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQ 526
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 115/454 (25%), Positives = 199/454 (43%)
Query: 34 YTVNQVLKTHPPMEKAWLFFNWVSR--SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFEL 91
YT N+++ + + +VS+ G + D FTYT+++ + + K + S VF
Sbjct: 219 YTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNE 278
Query: 92 MQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR 151
M KG + V YT ++H L A +D A++++ +MK EC+PT+ +YT +K L ++R
Sbjct: 279 MPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSER 338
Query: 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNI 211
EA ++ KEM + G+ PN +TYTVL++ L K+E+A E+ +M E G+ P+ N
Sbjct: 339 KSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNA 398
Query: 212 LIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPE 271
LI CK G + ++ M+ +L+ + E ++ + N VH
Sbjct: 399 LINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGY--CKSN------VHKAMG-- 448
Query: 272 FISDNDAVEFVTTDIEGPLSIDQGXXXXXXXXXXXXAIDSLLSGIMDKSIQLDSAVISTI 331
+ + V D+ S+ G LLS + D+ + D +++
Sbjct: 449 -VLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYR----LLSLMNDRGLVPDQWTYTSM 503
Query: 332 IEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH 391
I+ C +R + A F+ + +N Y ALI K + ++E+M
Sbjct: 504 IDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNC 563
Query: 392 SLGVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALIGVYFSAGSADKALK 449
LIH L + + A + + + Q +T T LI G D A
Sbjct: 564 LPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYS 623
Query: 450 IYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAE 483
++ M G P T+ + + GR+ DAE
Sbjct: 624 RFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAE 657
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| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 53/175 (30%), Positives = 96/175 (54%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAV-TY 104
++ AW FF+ + + G D TYT+M+ + +A R+ +FE + EK + Y
Sbjct: 254 VDMAWKFFHEIE-ANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHL-EKNRRVPCTYAY 311
Query: 105 TSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ 164
+++ +AG D A ++ E + K P++++Y + L +V EA V++EM +
Sbjct: 312 NTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEM-K 370
Query: 165 RGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKA 219
+ PN TY +L++ L RAGK + A E+ MQ+AG+ P+ NI++++ CK+
Sbjct: 371 KDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKS 425
|
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| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 255 (94.8 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 54/206 (26%), Positives = 110/206 (53%)
Query: 31 WDSYTVNQVLK---THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKY 87
W + +VN ++ +E A F +S GF D++T+ T+++ +A +
Sbjct: 257 WSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIE 316
Query: 88 VFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147
+ ++M ++G + D TY SV+ L G+V AV + ++M ++C P V+Y + L
Sbjct: 317 IMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLC 376
Query: 148 LNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKA 207
++V+EAT++ + + +G+ P+ T+ L++ L + A+E+F +M+ G +PD+
Sbjct: 377 KENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEF 436
Query: 208 ACNILIEKCCKAGETRTIILILRYMK 233
N+LI+ C G+ + +L+ M+
Sbjct: 437 TYNMLIDSLCSKGKLDEALNMLKQME 462
|
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| TAIR|locus:2093472 AT3G16010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 217 (81.4 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 54/227 (23%), Positives = 109/227 (48%)
Query: 10 KILKYSTWD-SAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFT 68
+I+K W A+ L+ L +K D V +L+ + FF W + R F HD T
Sbjct: 69 RIVKIFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHDCST 128
Query: 69 YTTMLDIFGEAKRISSM-KYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
Y T++ EA+ M + + E+++ +++ + ++ L A V A++++ +
Sbjct: 129 YMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQA 188
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRG-LPPNCYTYTVLMEYLVRAGK 186
K ++C PT +Y + + +L + ++ +VY EM G P+ TY+ L+ + G+
Sbjct: 189 KGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGR 248
Query: 187 YEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMK 233
+ A+ +F +M++ +QP + L+ K G+ + + MK
Sbjct: 249 NDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMK 295
|
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| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 293 (108.2 bits), Expect = 3.9e-23, P = 3.9e-23
Identities = 104/468 (22%), Positives = 200/468 (42%)
Query: 23 LLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSR--GFNHDRFTYTTMLDIFGEAK 80
++K+ P+ + N++L M+K L + + + G +H+ +TY +++ F
Sbjct: 76 MVKSRPLP-SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRS 134
Query: 81 RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYT 140
+IS + M + G VT +S+++ + + AV + ++M P +++T
Sbjct: 135 QISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFT 194
Query: 141 AYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA 200
+ LFL+++ EA + M+QRG PN TY V++ L + G + A + +KM+ A
Sbjct: 195 TLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAA 254
Query: 201 GVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL---ALRYPVFKEALQTF-KVADE 256
++ + + +I+ CK + + M+ + + Y L + + +D
Sbjct: 255 KIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDA 314
Query: 257 NDSLLWQVHPQFSPEFISDNDAVE-FVTTDIEGPLSIDQGXXXXXXXXXXXXAIDSLLSG 315
+ L + + +P ++ N ++ FV EG L + L
Sbjct: 315 SRLLSDMIERKINPNVVTFNALIDAFVK---EGKL----------------VEAEKLYDE 355
Query: 316 IMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNT 375
++ +SI D S++I C H R D A FE + D Y LI K
Sbjct: 356 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKR 415
Query: 376 FPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTA 433
+ E+ EM++ G LIH AR A +F + D TY
Sbjct: 416 IDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNT 475
Query: 434 LIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSD 481
L+ G +KA+ +++ + R + P++ T+N+++ G+ K G+V D
Sbjct: 476 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVED 523
|
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| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 291 (107.5 bits), Expect = 7.3e-23, P = 7.3e-23
Identities = 107/456 (23%), Positives = 196/456 (42%)
Query: 36 VNQVLKTHPPMEKAWLFF-NWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQE 94
+ Q+++T +E+ + F N V G D TT++ F + + E+++
Sbjct: 109 LRQMVRTGE-LEEGFKFLENMVYH--GNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEG 165
Query: 95 KGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKE 154
G D +TY ++ AG+++ A+++ + M + P +V+Y ++ L + ++K+
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDSGKLKQ 222
Query: 155 ATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214
A +V M+QR P+ TYT+L+E R A+++ +M++ G PD N+L+
Sbjct: 223 AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVN 282
Query: 215 KCCKAGETRTIILILRYMKEN----RLALRYPVFKEALQTFKVADENDSLLWQVHPQFSP 270
CK G I L M + + + + T + D L + FSP
Sbjct: 283 GICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSP 342
Query: 271 EFISDNDAVEFVTTDIEGPLSIDQGXXXXXXXXXXXXAIDSLLSGIMDKSIQLDSAVIST 330
++ N + F+ +G L AID +L + Q +S +
Sbjct: 343 SVVTFNILINFLCR--KGLLG---------------RAID-ILEKMPQHGCQPNSLSYNP 384
Query: 331 IIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAG 390
++ C ++ D A+ E V + Y ++ L K EI+ +++ G
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444
Query: 391 HSLGVYLGALLIHRLGSARRPVPAAKIFS-LLPEDQKC-TATYTALIGVYFSAGSADKAL 448
S + +I L A + A K+ + +D K T TY++L+G G D+A+
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI 504
Query: 449 KIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEI 484
K + R GI P+ TFN ++ GL K R +D I
Sbjct: 505 KFFHEFERMGIRPNAVTFNSIMLGLCK-SRQTDRAI 539
|
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| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 3.3e-22, P = 3.3e-22
Identities = 113/435 (25%), Positives = 189/435 (43%)
Query: 61 GFNHDRFTYTTMLDIFGEAKRIS-SMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
G D TY M+ + + I ++K + E+M E G D + S+++ L A VD
Sbjct: 498 GLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMM-ENGCEPDVIVVNSLINTLYKADRVDE 556
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A ++ MK + PT+V+Y + L N +++EA ++++ M+Q+G PPN T+ L +
Sbjct: 557 AWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFD 616
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLAL 239
L + + AL++ KM + G PD N +I K G+ + + MK+ L
Sbjct: 617 CLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKK----L 672
Query: 240 RYPVFKEALQTFKVADENDSLLWQVHPQFSPEFI---SDNDAVEFVTTDIEGPLSIDQGX 296
YP F L T SL+ + + F+ +D A F D+ G + + G
Sbjct: 673 VYPDFV-TLCTLLPGVVKASLIEDAY-KIITNFLYNCADQPANLF-WEDLIGSILAEAGI 729
Query: 297 XXXXXXXXXXXAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDL 356
A +GI DS ++ II +C H GA FE K DL
Sbjct: 730 DNAVSFSERLVA-----NGICRDG---DSILVP-IIRYSCKHNNVSGARTLFEKFTK-DL 779
Query: 357 NLERT--AYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPA 414
++ Y LIG L++ + ++ ++ G V L+ G + +
Sbjct: 780 GVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGK---I 836
Query: 415 AKIFSLLPE--DQKC---TATYTALIGVYFSAGSADKALKIY-KTMCRKGIHPSLGTFNV 468
++F L E +C T T+ +I AG+ D AL +Y M + P+ T+
Sbjct: 837 DELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGP 896
Query: 469 LLAGLEKLGRVSDAE 483
L+ GL K GR+ +A+
Sbjct: 897 LIDGLSKSGRLYEAK 911
|
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| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 232 (86.7 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 50/196 (25%), Positives = 99/196 (50%)
Query: 43 HPPMEKAWLFFNWVSRSRGFNH--DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINID 100
H + A F+W + + + D ++ + G+ R+SS +F +QE G ++D
Sbjct: 148 HKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLD 207
Query: 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF-LNDRVKEATDVY 159
+YTS++ +N+G AVN++++M+ C PT+++Y + + + + T +
Sbjct: 208 VYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLV 267
Query: 160 KEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKA 219
++M G+ P+ YTY L+ R ++EA ++F +M+ AG DK N L++ K+
Sbjct: 268 EKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKS 327
Query: 220 GETRTIILILRYMKEN 235
+ + +L M N
Sbjct: 328 HRPKEAMKVLNEMVLN 343
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZU29 | PP139_ARATH | No assigned EC number | 0.5772 | 0.9922 | 0.8925 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00025004001 | SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (569 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 519 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 1e-16
Identities = 46/167 (27%), Positives = 88/167 (52%), Gaps = 13/167 (7%)
Query: 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQE---KGINIDAVTYTSVMHWLSNAGDVDGAV 121
D ++ ++D+ G A + FE++Q+ +GI + V+Y+S+M SNA + A+
Sbjct: 648 DEVFFSALVDVAGHAGDLDK---AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704
Query: 122 NIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181
++E++K + PT+ + A + L +++ +A +V EM + GL PN TY++L+
Sbjct: 705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764
Query: 182 VRAGKYEEALEIFSKMQEAGVQPDKAACNILI-------EKCCKAGE 221
R + L++ S+ +E G++P+ C + EK C GE
Sbjct: 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGE 811
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 7e-13
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 169 PNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCK 218
P+ TY L++ + GK EEAL++F++M++ G++P+ +ILI+ CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 1e-11
Identities = 38/169 (22%), Positives = 82/169 (48%)
Query: 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIW 124
D T ++ A ++ K V++++ E I YT ++ S GD D A++I+
Sbjct: 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637
Query: 125 EEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184
++MK K P V ++A + + + +A ++ ++ ++G+ +Y+ LM A
Sbjct: 638 DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697
Query: 185 GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMK 233
+++ALE++ ++ ++P + N LI C+ + + +L MK
Sbjct: 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 7e-11
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 134 PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183
P +V+Y + +V+EA ++ EM +RG+ PN YTY++L++ L +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 1e-09
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 100 DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTA 141
D VTY +++ G V+ A+ ++ EMK + P + +Y+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSI 43
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 3e-09
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 426 KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGL 473
TY LI Y G ++ALK++ M ++GI P++ T+++L+ GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 1e-08
Identities = 46/192 (23%), Positives = 88/192 (45%), Gaps = 12/192 (6%)
Query: 18 DSAQDLLKNLPIK----WDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTML 73
+ A+ + +P K W+S L H E+A + + S G + D+FT++ M+
Sbjct: 276 EDARCVFDGMPEKTTVAWNSMLAGYAL--HGYSEEALCLYYEMRDS-GVSIDQFTFSIMI 332
Query: 74 DIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECY 133
IF + K + G +D V T+++ S G ++ A N+++ M K
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK--- 389
Query: 134 PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEI 193
++S+ A + + R +A ++++ MI G+ PN T+ ++ +G E+ EI
Sbjct: 390 -NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
Query: 194 FSKMQEA-GVQP 204
F M E ++P
Sbjct: 449 FQSMSENHRIKP 460
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 2/179 (1%)
Query: 58 RSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDV 117
+ G D YTT++ ++ ++ +M VF M G+ + T+ +++ + AG V
Sbjct: 464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523
Query: 118 DGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLP--PNCYTYT 175
A + M+ K P V + A + + V A DV EM P P+ T
Sbjct: 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG 583
Query: 176 VLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234
LM+ AG+ + A E++ + E ++ I + C + G+ + I MK+
Sbjct: 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 7e-08
Identities = 65/347 (18%), Positives = 132/347 (38%), Gaps = 60/347 (17%)
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
T+ ++ + ++ I V L+QE G+ D YT+++ + +G VD ++ EM
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187
+ ++ A + +V +A Y M + + P+ + L+ ++G
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558
Query: 188 EEALEIFSKMQ-EAG-VQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFK 245
+ A ++ ++M+ E + PD L++ C AG+
Sbjct: 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV----------------------D 596
Query: 246 EALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFV--TTDIEGPLSIDQGLVLILLKK 303
A + +++ E + + +PE + AV D + LSI +KK
Sbjct: 597 RAKEVYQMIHEYNI-------KGTPEVYT--IAVNSCSQKGDWDFALSIYDD-----MKK 642
Query: 304 KNLVAIDSLLSGIMD--------------------KSIQLDSAVISTIIEVNCDHRRRDG 343
K + + S ++D + I+L + S+++ + +
Sbjct: 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702
Query: 344 ALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAG 390
AL +E + L + ALI L + N PK E++ EM + G
Sbjct: 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 8e-08
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 172 YTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPD 205
TY L++ L +AG+ EEALE+F +M+E G++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 2e-07
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN 113
D TY T++D + + ++ +F M+++GI + TY+ ++ L
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 24/88 (27%), Positives = 45/88 (51%)
Query: 134 PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEI 193
PT+ ++ M + + + A V + + + GL +C YT L+ ++GK + E+
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 194 FSKMQEAGVQPDKAACNILIEKCCKAGE 221
F +M AGV+ + LI+ C +AG+
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQ 522
|
Length = 1060 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 1e-05
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 172 YTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP 204
TY L+ L +AG + AL + +M+ +G++P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 172 YTYTVLMEYLVRAGKYEEALEIFSKMQEAGV 202
TY L+ +AGK EEALE+F +M+E GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 3e-05
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 165 RGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198
+GL P+ TY L++ L RAG+ +EA+E+ +M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 6e-05
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTI 136
VTY +++ L AG V+ A+ +++EMK + P +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 6e-05
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 67 FTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDA 101
TY T++D +A R+ +F+ M+E+GI D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 9e-05
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPS 462
TY LI AG ++AL+++K M +GI P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 6e-04
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 430 TYTALIGVYFSAGSADKALKIYKTMCRKGI 459
TY +LI Y AG ++AL+++K M KG+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 9e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 428 TATYTALIGVYFSAGSADKALKIYKTMCRKGIHP 461
TY AL+ AG D AL + + M G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 137 VSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNC 171
V+Y + L RV+EA +++KEM +RG+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 95 KGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMK 128
KG+ D VTY +++ L AG VD AV + +EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKEC 132
VTY S++ AG ++ A+ +++EMK K
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 79/417 (18%), Positives = 159/417 (38%), Gaps = 51/417 (12%)
Query: 96 GINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEA 155
+++D V M+ GDV A +++ M ++C +S+ A + F N E
Sbjct: 219 ELDVDVVNALITMY--VKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEG 272
Query: 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEK 215
+++ M + + P+ T T ++ G E+ + + G D + CN LI+
Sbjct: 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332
Query: 216 CCKAGETRTIILILRYMKENRLALRYPVF----------KEALQTFKVADENDSLLWQVH 265
G + M E + A+ + +AL+T+ + ++++ V
Sbjct: 333 YLSLGSWGEAEKVFSRM-ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN-----VS 386
Query: 266 PQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKN-----LVAIDSLL-----SG 315
P D + V + +D G+ L L ++ +V ++L+
Sbjct: 387 P--------DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438
Query: 316 IMDKSIQL-----DSAVIS--TIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIG 368
+DK++++ + VIS +II + R AL+ F + + L +A +
Sbjct: 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ-MLLTLKPNSVTLIAALS 497
Query: 369 ILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCT 428
++ EI + + G +L L+ R A F+ +D
Sbjct: 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKD---V 554
Query: 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIY 485
++ L+ Y + G A++++ M G++P TF LL + G V+ Y
Sbjct: 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611
|
Length = 857 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 519 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.84 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.73 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.62 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.58 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.56 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.55 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.54 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.49 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.49 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.47 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.46 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.44 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.44 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.41 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.35 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.32 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.31 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.3 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.27 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.26 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.24 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.24 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.23 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.23 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.23 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.19 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.19 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.19 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.14 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.12 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.11 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.05 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.99 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.97 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.97 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.94 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.92 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.91 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.91 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.9 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.9 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.88 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.88 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.84 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.82 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.81 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.8 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.79 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.73 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.73 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.72 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.69 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.68 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.65 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.65 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.64 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.6 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.6 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.55 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.53 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.51 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.51 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.5 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.49 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.48 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.48 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.48 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.45 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.44 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.43 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.41 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.41 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.39 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.37 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.37 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.35 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.35 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.32 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.32 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.28 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.26 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.23 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.23 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.22 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.22 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.21 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.21 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.2 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.2 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.2 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.11 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.11 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.11 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.1 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.09 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.08 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.07 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.07 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.06 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.99 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.97 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.96 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.95 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.94 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.86 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.84 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.83 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.79 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.78 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.72 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.69 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.67 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.61 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.58 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.56 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.54 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.51 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.5 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.5 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.48 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.48 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.48 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.44 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.38 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.38 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.38 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.35 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.31 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.31 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.3 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.27 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.26 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.26 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.24 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.24 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.21 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.2 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.19 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.15 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.13 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.13 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.12 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.12 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.11 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.11 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.08 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.06 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.05 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.01 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.98 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.95 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.93 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.91 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.89 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.8 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.79 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.76 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.76 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.66 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.62 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.59 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.57 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.5 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.5 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.49 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.3 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.25 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.24 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.22 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.19 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.14 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.09 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.08 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.07 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.07 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.97 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.97 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.94 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.9 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.84 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.72 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.7 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.59 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.47 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.47 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.3 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.29 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.27 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.2 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.2 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.02 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 95.02 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.93 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.79 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.7 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.64 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.64 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.63 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.59 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.55 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.44 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.32 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.08 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.02 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.02 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.01 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.99 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.98 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.96 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.89 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.88 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.84 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.83 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.76 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 93.75 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.74 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.71 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.63 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.55 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.46 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.23 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.21 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.13 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.92 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.84 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.8 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.76 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.65 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.58 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.47 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.42 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.33 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.04 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 91.94 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.55 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.41 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.37 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.31 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.16 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.05 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.04 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.03 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.89 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.33 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.16 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.11 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 90.1 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.04 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 89.97 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.95 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 89.43 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.39 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.25 | |
| PF11838 | 324 | ERAP1_C: ERAP1-like C-terminal domain; InterPro: I | 89.11 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.08 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.3 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.27 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 87.77 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.74 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.67 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.01 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 86.97 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 86.93 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 86.8 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.63 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.44 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 86.12 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.0 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.84 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.79 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 85.37 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.31 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.97 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 84.71 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 84.27 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.25 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 83.67 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.62 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 83.56 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.44 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 82.61 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.57 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.27 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.21 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.17 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.85 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 81.35 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.95 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.92 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 80.05 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=524.13 Aligned_cols=487 Identities=17% Similarity=0.241 Sum_probs=434.8
Q ss_pred hhhhhHHhhhccCChhHHHHHHHhC---C-CCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 010057 3 DTISNVYKILKYSTWDSAQDLLKNL---P-IKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDI 75 (519)
Q Consensus 3 ~~~~~i~~~~~~~~~~~a~~~~~~~---~-~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 75 (519)
+.+..+..+++.|++++|+++|++| + +.|+..+++.++..| |..+.|..+|+.|. .||..+|+.+|.+
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn~LL~a 446 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NPTLSTFNMLMSV 446 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-----CCCHHHHHHHHHH
Confidence 3566778888999999999999999 3 456777777777665 88999999999985 3999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 010057 76 FGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 155 (519)
|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE--AGVQPDKAACNILIEKCCKAGETRTIILILRYMK 233 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 233 (519)
.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986 5899999999999999999999999999999999
Q ss_pred HcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHH
Q 010057 234 ENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLL 313 (519)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 313 (519)
+.++.|+..+|..++..|.+.++.+.....+... .......+...++.++..|++.|++++|..++
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM--------------~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM--------------KKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH--------------HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999988877665433221 11223445567788999999999999999999
Q ss_pred HHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCc
Q 010057 314 SGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSL 393 (519)
Q Consensus 314 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (519)
+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhcCCCcchHHHHhhhCCcC--CCCchhHHHHHHHHHh-----------------------cCCHHHHH
Q 010057 394 GVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALIGVYFS-----------------------AGSADKAL 448 (519)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~-----------------------~g~~~~A~ 448 (519)
|..+|+.++.+|++.|++++|.++|+.|.+. .||..+|+.++..|.+ .+..++|+
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 9999999999999999999999999998775 5888999999876542 12346799
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccccccchHHHHhhh
Q 010057 449 KIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKICDL 511 (519)
Q Consensus 449 ~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 511 (519)
.+|++|++.|+.||..||+.++.++.+.+..+.+..+++.+.. ....|+..+++.+|.++
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~---~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI---SADSQKQSNLSTLVDGF 892 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc---CCCCcchhhhHHHHHhh
Confidence 9999999999999999999999777888888888888876643 35678888888888875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=515.71 Aligned_cols=474 Identities=16% Similarity=0.160 Sum_probs=435.6
Q ss_pred HHhhhccCChhHHHHHHHhCCCCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhH
Q 010057 8 VYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISS 84 (519)
Q Consensus 8 i~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 84 (519)
+..+.+.|.+++|.++|+.|.. |+..+|+.+|..| |+++.|.++|+.| ...|+.||..+|+.+|.+|++.|++++
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M-~~~Gl~pD~~tynsLI~~y~k~G~vd~ 490 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALRVLRLV-QEAGLKADCKLYTTLISTCAKSGKVDA 490 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence 4457788999999999999975 9999999999987 8999999999999 578999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 85 MKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 85 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 164 (519)
|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|..
T Consensus 491 A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred --CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHH
Q 010057 165 --RGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYP 242 (519)
Q Consensus 165 --~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 242 (519)
.|+.||..+|++||.+|++.|++++|.++|+.|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.|+..
T Consensus 571 ~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~ 650 (1060)
T PLN03218 571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650 (1060)
T ss_pred hcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010057 243 VFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQ 322 (519)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 322 (519)
+|..++..+.+.++.+.....+.. ........+...++.++..|++.|++++|..+|+.|...++.
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~e--------------M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQD--------------ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH--------------HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999887765442221 122334556678899999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHH
Q 010057 323 LDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLI 402 (519)
Q Consensus 323 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 402 (519)
|+..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+|++++
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHh----cCC-------------------CcchHHHHhhhCCcC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 403 HRLG----SAR-------------------RPVPAAKIFSLLPED--QKCTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 403 ~~~~----~~g-------------------~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
..|. +++ ..++|..+|++|.+. .||..+|+.++.++...+..+.+.++++.|...
T Consensus 797 glc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~ 876 (1060)
T PLN03218 797 GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS 876 (1060)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC
Confidence 7643 221 135799999999886 599999999999888899999999999999999
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccccccccc
Q 010057 458 GIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAV 502 (519)
Q Consensus 458 g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 502 (519)
+..|+..+|++++.+|.+. .++|..++++|.+. ++.|+..
T Consensus 877 ~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~---Gi~p~~~ 916 (1060)
T PLN03218 877 ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL---GVVPSVS 916 (1060)
T ss_pred CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc---CCCCCcc
Confidence 9999999999999998442 36899999988764 6667654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=519.17 Aligned_cols=479 Identities=15% Similarity=0.195 Sum_probs=349.7
Q ss_pred HHhhhccCChhHHHHHHHhCCCCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhH
Q 010057 8 VYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISS 84 (519)
Q Consensus 8 i~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 84 (519)
|..|.+.|+++.|+++|++|+ .||..+|+.+|..+ |++++|+++|+.|. ..|+.||..||+.++++|++.+++..
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~-~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP-ERDLFSWNVLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC-CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhh
Confidence 444556666666666666664 34556666665544 55566666666653 34555555555555544444444444
Q ss_pred HHHHHHHHHhCCCCC-------------------------------CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 010057 85 MKYVFELMQEKGINI-------------------------------DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECY 133 (519)
Q Consensus 85 a~~~~~~m~~~~~~~-------------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 133 (519)
+.+++..|.+.|+.| |..+||++|.+|++.|+.++|.++|++|.+.|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 444444444444444 4455555555555555555555555555555555
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010057 134 PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILI 213 (519)
Q Consensus 134 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 213 (519)
||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|. .||..+|+++|
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li 361 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMI 361 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHH
Confidence 55555555555555555555555555555555555555556666666666666666666666554 24555666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcch
Q 010057 214 EKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSID 293 (519)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (519)
.+|++.|++++|.++|++|.+.|+.|+..++..++.++.+.++.+...... ..........+..++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~--------------~~~~~~g~~~~~~~~ 427 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH--------------ELAERKGLISYVVVA 427 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHH--------------HHHHHhCCCcchHHH
Confidence 666666666666666666666666677777777776666666554432211 011233445566788
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 010057 294 QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKL 373 (519)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (519)
+.++..|++.|++++|.++|+.|.+ ++..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARI 502 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhh
Confidence 8999999999999999999999864 5778999999999999999999999999986 5899999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 010057 374 NTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKT 453 (519)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 453 (519)
|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .||..+||+||.+|++.|+.++|+++|++
T Consensus 503 g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 58899999999999999999999999999
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccccccchHHHHhhhhccCC
Q 010057 454 MCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKICDLLYGGD 516 (519)
Q Consensus 454 m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 516 (519)
|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+. .++.|+..++...+..+..+|+
T Consensus 580 M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~--~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK--YSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999998743 4678888888888888888775
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-61 Score=481.10 Aligned_cols=459 Identities=15% Similarity=0.177 Sum_probs=426.2
Q ss_pred hhhhHHhhhccCChhHHHHHHHhC----CCCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010057 4 TISNVYKILKYSTWDSAQDLLKNL----PIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIF 76 (519)
Q Consensus 4 ~~~~i~~~~~~~~~~~a~~~~~~~----~~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 76 (519)
+-..|..+.+.|++++|+++|+.| +..|+..+|+.++.++ ++.+.|.+++..| ...|+.||..+|+.++.+|
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m-~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHV-ESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCCcchHHHHHHHHHH
Confidence 456788899999999999999998 4679999999999987 7899999999999 4789999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 010057 77 GEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEAT 156 (519)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 156 (519)
++.|+++.|.++|++|.+ ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.+.+.
T Consensus 169 ~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 999999999999999975 6999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 157 DVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 157 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
+++..+.+.|+.||..+|++||.+|++.|++++|.++|++|.. +|..+|++||.+|++.|++++|.++|++|.+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999964 699999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHH
Q 010057 237 LALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGI 316 (519)
Q Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 316 (519)
+.|+..+|..++.++.+.+..+...+.. ..........+..+++.++..|++.|+++.|..+|+.|
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~--------------~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAH--------------AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHH--------------HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 9999999999999999988776543321 11223445667788999999999999999999999998
Q ss_pred HhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHh-cCCCccc
Q 010057 317 MDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTK-AGHSLGV 395 (519)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~ 395 (519)
. .||..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+.
T Consensus 387 ~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 387 P----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred C----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 6 4788999999999999999999999999999999999999999999999999999999999999986 6999999
Q ss_pred hhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CcccHHHHHHHHH
Q 010057 396 YLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP-SLGTFNVLLAGLE 474 (519)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~ 474 (519)
.+|++++++|++.|++++|.++++.++. .|+..+|++|+.+|..+|+.+.|.++++++.+. .| +..+|..++++|+
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~~~-~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRAPF-KPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYN 539 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHH
Confidence 9999999999999999999999999875 588999999999999999999999999999755 55 4779999999999
Q ss_pred hcCChhHHHHHHHHhccc
Q 010057 475 KLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 475 ~~g~~~~a~~~~~~~~~~ 492 (519)
+.|++++|.+++++|++.
T Consensus 540 ~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRK 557 (697)
T ss_pred hCCCHHHHHHHHHHHHHc
Confidence 999999999999999865
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-61 Score=492.19 Aligned_cols=472 Identities=15% Similarity=0.162 Sum_probs=434.1
Q ss_pred hhHHhhhccCChhHHHHHHHhC---CCCCCHHHHHHHHhcC--------------------------------------C
Q 010057 6 SNVYKILKYSTWDSAQDLLKNL---PIKWDSYTVNQVLKTH--------------------------------------P 44 (519)
Q Consensus 6 ~~i~~~~~~~~~~~a~~~~~~~---~~~p~~~~~~~ll~~~--------------------------------------~ 44 (519)
..|.++.+.|++++|+++|++| |+.||.++|+.+|.+| |
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence 5688899999999999999998 8899988887766532 6
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 010057 45 PMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIW 124 (519)
Q Consensus 45 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 124 (519)
+++.|.++|+.|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++
T Consensus 237 ~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~ 311 (857)
T PLN03077 237 DVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311 (857)
T ss_pred CHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Confidence 7788888888884 57889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010057 125 EEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP 204 (519)
Q Consensus 125 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 204 (519)
..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 312 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999997 4799999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHh
Q 010057 205 DKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTT 284 (519)
Q Consensus 205 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (519)
|..||+.++.+|++.|+++.|.++++.+.+.|+.++..++..++..|.+.++.+.....+...
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m----------------- 450 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI----------------- 450 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC-----------------
Confidence 999999999999999999999999999999999999999999999999999888766544332
Q ss_pred ccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHH
Q 010057 285 DIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYL 364 (519)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (519)
...+...++.++..|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|..+.+.+++..+.+.|+.++..+++
T Consensus 451 -~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n 528 (857)
T PLN03077 451 -PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528 (857)
T ss_pred -CCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence 234556889999999999999999999999975 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC--CCCchhHHHHHHHHHhcC
Q 010057 365 ALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALIGVYFSAG 442 (519)
Q Consensus 365 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g 442 (519)
+++.+|++.|++++|.++|+.+ .+|..+|++++.+|++.|+.++|.++|++|.+. .||..||+.++.+|.+.|
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 9999999999999999999887 589999999999999999999999999999775 689999999999999999
Q ss_pred CHHHHHHHHHHHH-HCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccccccchHHHHhhhhccCC
Q 010057 443 SADKALKIYKTMC-RKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKICDLLYGGD 516 (519)
Q Consensus 443 ~~~~A~~~~~~m~-~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 516 (519)
++++|.++|++|. +.|+.|+..+|++++.+|.+.|++++|.+++++|. +.||...+..++.++-..|+
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~------~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP------ITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999 67999999999999999999999999999998872 56888888888888766554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-59 Score=465.60 Aligned_cols=456 Identities=14% Similarity=0.157 Sum_probs=407.7
Q ss_pred CCCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 010057 28 PIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTY 104 (519)
Q Consensus 28 ~~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 104 (519)
...++..+|+.+|..+ |++++|+++|++|....++.||..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+|
T Consensus 82 ~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 82 QIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred cCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 3445666888888764 8999999999999755568899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010057 105 TSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184 (519)
Q Consensus 105 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 184 (519)
+.|+.+|++.|+++.|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 9999999999999999999999964 699999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhh
Q 010057 185 GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQV 264 (519)
Q Consensus 185 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 264 (519)
|..+.+.+++..+.+.|+.||..+|++||.+|++.|++++|.++|++|.. ++..+|..++..|.+.++.++....+
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999965 46778999999999888887765433
Q ss_pred CCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhH
Q 010057 265 HPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGA 344 (519)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 344 (519)
... .......+...+..++..+++.|+++.+..++..|.+.|+.|+..+|++++.+|++.|++++|
T Consensus 314 ~~M--------------~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 314 YEM--------------RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred HHH--------------HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence 211 112234555678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC
Q 010057 345 LLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED 424 (519)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 424 (519)
.++|+.|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|..++|.++|+.|.+.
T Consensus 380 ~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 380 RNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 99999886 47889999999999999999999999999999999999999999999999999999999999999653
Q ss_pred ---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccccc
Q 010057 425 ---QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDA 501 (519)
Q Consensus 425 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 501 (519)
.|+..+|+.|+.+|++.|+.++|.+++++| ++.||..+|+.++.+|...|+++.|+..++++.++.|+ +.
T Consensus 456 ~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~----~~ 528 (697)
T PLN03081 456 HRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE----KL 528 (697)
T ss_pred cCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC----CC
Confidence 588899999999999999999999998876 67899999999999999999999999999999887764 34
Q ss_pred cchHHHHhhhhccCC
Q 010057 502 VPMEEKICDLLYGGD 516 (519)
Q Consensus 502 ~~~~~~i~~~~~~~~ 516 (519)
.++..++..+...|+
T Consensus 529 ~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 529 NNYVVLLNLYNSSGR 543 (697)
T ss_pred cchHHHHHHHHhCCC
Confidence 466666665555553
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-26 Score=240.79 Aligned_cols=467 Identities=12% Similarity=0.028 Sum_probs=233.6
Q ss_pred hhhccCChhHHHHHHHhC-CCCCCHHH-HHHH---HhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhH
Q 010057 10 KILKYSTWDSAQDLLKNL-PIKWDSYT-VNQV---LKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISS 84 (519)
Q Consensus 10 ~~~~~~~~~~a~~~~~~~-~~~p~~~~-~~~l---l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 84 (519)
.+...|++++|++.|+.. ...|+... ...+ ....|++++|.++++.+... .+++..+|..+...+...|++++
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHH
Confidence 345566666666666655 22222211 1111 11236666666666666432 24455566666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 85 MKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 85 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 164 (519)
|.+.|+.+.+... .+...+..+...+...|++++|.+.|+++.... +.+..++..+...+.+.|+.++|...++++..
T Consensus 484 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 561 (899)
T TIGR02917 484 AREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561 (899)
T ss_pred HHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666655432 234455556666666666666666666665543 22455566666666666666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHH
Q 010057 165 RGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVF 244 (519)
Q Consensus 165 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 244 (519)
.+ +.+...+..+...|...|++++|..+++.+.+. .+.+..+|..+..+|.+.|++++|...++.+.+.... +...+
T Consensus 562 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 638 (899)
T TIGR02917 562 LN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALAL 638 (899)
T ss_pred hC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 42 234455555666666666666666666666543 2334556666666666666666666666665554321 12223
Q ss_pred HHHHHHHhhcCchhHHHhhhCCCCCccc----------------ccchhhhhhHHhc---cCCCCcchhHHHHHHHhcCC
Q 010057 245 KEALQTFKVADENDSLLWQVHPQFSPEF----------------ISDNDAVEFVTTD---IEGPLSIDQGLVLILLKKKN 305 (519)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 305 (519)
..+...+...++.+.....+........ .....+....... .......+..+...+...|+
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCC
Confidence 3333333334443333222211110000 0000000000000 01111222333344555555
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 010057 306 LVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEE 385 (519)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 385 (519)
+++|...+..+.... |+..++..+..++...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|+.
T Consensus 719 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 719 YPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 555555555554432 222444445555555555555555555555433 23444455555555555555555555555
Q ss_pred HHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 010057 386 MTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLG 464 (519)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (519)
+.+.. +.++.+++.+...+...|+ .+|...++++.... .++..+..+..+|.+.|++++|.++|+++.+.+ +.++.
T Consensus 796 ~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~ 872 (899)
T TIGR02917 796 VVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAA 872 (899)
T ss_pred HHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChH
Confidence 55443 3344455555555555555 44555555444332 234445555555555555555555555555553 22455
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHh
Q 010057 465 TFNVLLAGLEKLGRVSDAEIYRKEK 489 (519)
Q Consensus 465 t~~~l~~~~~~~g~~~~a~~~~~~~ 489 (519)
++..+..++.+.|++++|.++++++
T Consensus 873 ~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 873 IRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555555555554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-25 Score=236.28 Aligned_cols=492 Identities=12% Similarity=0.072 Sum_probs=374.6
Q ss_pred hHHhhhccCChhHHHHHHHhC-CCCCCHHH-HHHH---HhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC
Q 010057 7 NVYKILKYSTWDSAQDLLKNL-PIKWDSYT-VNQV---LKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKR 81 (519)
Q Consensus 7 ~i~~~~~~~~~~~a~~~~~~~-~~~p~~~~-~~~l---l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 81 (519)
....+.+.|++++|.+.|+++ ...|+... +..+ ....|++++|.+.|+.+.+.. +.+......++..+.+.|+
T Consensus 369 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCC
Confidence 445677899999999999988 44555433 3222 223499999999999886432 2344566778889999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010057 82 ISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKE 161 (519)
Q Consensus 82 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (519)
+++|.++++.+.+.. +++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 447 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 447 FDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998753 4478899999999999999999999999998763 23566788899999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCH
Q 010057 162 MIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRY 241 (519)
Q Consensus 162 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 241 (519)
+.+.+ +.+..++..+...+.+.|+.++|..+++++...+ +.+...+..+...|.+.|++++|..+++.+.+.... +.
T Consensus 525 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 601 (899)
T TIGR02917 525 VLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD-SP 601 (899)
T ss_pred HHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CH
Confidence 99864 4477899999999999999999999999998764 346678889999999999999999999999875433 44
Q ss_pred HHHHHHHHHHhhcCchhHHHhhhCCCCC----------------cccccchhhhhhHHhccC---CCCcchhHHHHHHHh
Q 010057 242 PVFKEALQTFKVADENDSLLWQVHPQFS----------------PEFISDNDAVEFVTTDIE---GPLSIDQGLVLILLK 302 (519)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~ 302 (519)
..+..+...+...++.+.....+..... ........+...+..... .....+..+...+..
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 5555556666666655544332211110 011112222233322222 223344566778888
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHH
Q 010057 303 KKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEI 382 (519)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 382 (519)
.|+.+.|..+++.+.... ..+...+..+...+...|++++|+..|+.+...+ |+..++..+..++.+.|++++|.+.
T Consensus 682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHH
Confidence 899999999998887765 3466677788888889999999999999888765 4446777888889999999999999
Q ss_pred HHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010057 383 VEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP 461 (519)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 461 (519)
+..+.+.. +.+...+..+...|...|+.++|.+.|+++.+. ++++..++.+...+.+.|+ .+|+++++++.+.. +-
T Consensus 759 ~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~ 835 (899)
T TIGR02917 759 LEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PN 835 (899)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CC
Confidence 99988765 567778888888999999999999999988765 4567788999999999999 78999999988763 33
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccccccchHHHHhhhhccC
Q 010057 462 SLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKICDLLYGG 515 (519)
Q Consensus 462 ~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 515 (519)
++.++..+..++...|++++|.++++++.+..|. +...+......+...|
T Consensus 836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE----AAAIRYHLALALLATG 885 (899)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcC
Confidence 5667778888899999999999999999988775 3344444444444444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-21 Score=181.20 Aligned_cols=310 Identities=11% Similarity=0.102 Sum_probs=211.9
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCC
Q 010057 75 IFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT---IVSYTAYMKILFLNDR 151 (519)
Q Consensus 75 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~ 151 (519)
.+...|++++|...|..+.+.+. .+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34556777777777777776532 2455667777777777777777777777665422211 2356666777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHH
Q 010057 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDK----AACNILIEKCCKAGETRTIIL 227 (519)
Q Consensus 152 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~ 227 (519)
+++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777776642 335566777777777777777777777777664322211 134455556666677777777
Q ss_pred HHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHH
Q 010057 228 ILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLV 307 (519)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 307 (519)
.++++.+...
T Consensus 202 ~~~~al~~~p---------------------------------------------------------------------- 211 (389)
T PRK11788 202 LLKKALAADP---------------------------------------------------------------------- 211 (389)
T ss_pred HHHHHHhHCc----------------------------------------------------------------------
Confidence 7666554221
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 010057 308 AIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMT 387 (519)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 387 (519)
.+...+..+...+.+.|++++|++.|+++.+.+......++..+..+|.+.|++++|...++.+.
T Consensus 212 ---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 212 ---------------QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred ---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12234555667777888888888888888765433334567788888888888888888888888
Q ss_pred hcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCcc
Q 010057 388 KAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFS---AGSADKALKIYKTMCRKGIHPSLG 464 (519)
Q Consensus 388 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 464 (519)
+.. |+...+..+...+.+.|++++|.++++.+.+..|+...++.++..+.. .|+.++++.++++|.+.++.|++.
T Consensus 277 ~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 277 EEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 764 555666778888888888888888888777767777788888877664 558889999999999988888877
Q ss_pred cHHHHHHHHHhcCCh
Q 010057 465 TFNVLLAGLEKLGRV 479 (519)
Q Consensus 465 t~~~l~~~~~~~g~~ 479 (519)
.+|.+.|..
T Consensus 355 ------~~c~~cg~~ 363 (389)
T PRK11788 355 ------YRCRNCGFT 363 (389)
T ss_pred ------EECCCCCCC
Confidence 235555544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-18 Score=182.72 Aligned_cols=477 Identities=10% Similarity=-0.012 Sum_probs=277.0
Q ss_pred hhHHhhhccCChhHHHHHHHhC--CCCCCHHH----HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 010057 6 SNVYKILKYSTWDSAQDLLKNL--PIKWDSYT----VNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEA 79 (519)
Q Consensus 6 ~~i~~~~~~~~~~~a~~~~~~~--~~~p~~~~----~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 79 (519)
.....+.+.|++++|++.|++. +.+|+... |..+....+++++|++.++.+.+.. +.+...+..+...+...
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcc
Confidence 3344578889999999999998 33344321 2222333489999999999997553 55677888999999999
Q ss_pred CChhHHHHHHHHHHhCCC------------------C--------------CCHHHH---------------------HH
Q 010057 80 KRISSMKYVFELMQEKGI------------------N--------------IDAVTY---------------------TS 106 (519)
Q Consensus 80 ~~~~~a~~~~~~m~~~~~------------------~--------------~~~~~~---------------------~~ 106 (519)
|+.++|.+.++++.+... . |+.... ..
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 999999999998765321 0 110000 01
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHH----------
Q 010057 107 VMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPP-NCYTYT---------- 175 (519)
Q Consensus 107 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~---------- 175 (519)
....+...|++++|+..|++..+... .+...+..+..++.+.|++++|...|++..+..... +...|.
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 13345678999999999999988632 267889999999999999999999999988753211 111121
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhh
Q 010057 176 --VLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKV 253 (519)
Q Consensus 176 --~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 253 (519)
.....+.+.|++++|...|++..+.. +.+...+..+..++...|++++|++.|++..+...... ..+..+...+.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~-~a~~~L~~l~~- 430 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT-NAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH-
Confidence 22446778999999999999998863 23556778889999999999999999999987654322 22222222222
Q ss_pred cCchhHHHhhhCCCCC-------------------------cccccchhhhhhHHhccCC---CCcchhHHHHHHHhcCC
Q 010057 254 ADENDSLLWQVHPQFS-------------------------PEFISDNDAVEFVTTDIEG---PLSIDQGLVLILLKKKN 305 (519)
Q Consensus 254 ~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 305 (519)
..+.+.....+..... ........+...+...... +......+...+...|+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 1222222211110000 0011112222222222211 11223344455666666
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCC-----------------------------
Q 010057 306 LVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDL----------------------------- 356 (519)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----------------------------- 356 (519)
.++|...++.+...... +...+..+...+...++.++|+..++.+.....
T Consensus 511 ~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 66666666665543221 222222223334455666666666655422110
Q ss_pred ----------CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC
Q 010057 357 ----------NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK 426 (519)
Q Consensus 357 ----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 426 (519)
+.+...+..+...+.+.|++++|+..|+...+.. +.+......+...|...|+.++|++.++.+....|
T Consensus 590 ~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 590 AEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 1122233344445555566666666666655543 23445555555666666666666666665554433
Q ss_pred -CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CcccHHHHHHHHHhcCChhHHHHHHHHhc
Q 010057 427 -CTATYTALIGVYFSAGSADKALKIYKTMCRKGI--HP---SLGTFNVLLAGLEKLGRVSDAEIYRKEKK 490 (519)
Q Consensus 427 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~t~~~l~~~~~~~g~~~~a~~~~~~~~ 490 (519)
+...+..+..++...|++++|.++++++....- +| +...+..+...+...|++++|...|++..
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234445555556666666666666666554421 11 11233344555566666666666666553
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-19 Score=185.72 Aligned_cols=433 Identities=12% Similarity=0.066 Sum_probs=274.8
Q ss_pred hhccCChhHHHHHHHhC-CCCCC-HHHHHHH---HhcCCChHHHHHHHHHHhhcCCCCCCHHHHH------------HHH
Q 010057 11 ILKYSTWDSAQDLLKNL-PIKWD-SYTVNQV---LKTHPPMEKAWLFFNWVSRSRGFNHDRFTYT------------TML 73 (519)
Q Consensus 11 ~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l---l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------~li 73 (519)
+...|++++|+..|++. ...|+ ...+..+ ....|++++|++.|+...+...-.++...|. ...
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 45567777777777766 44443 2222222 1223777777777776653321111211121 112
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 010057 74 DIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVK 153 (519)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 153 (519)
..+.+.|++++|...|++..+.... +...+..+...+...|++++|++.|++..+.. +.+...+..+...|. .++.+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHH
Confidence 3455667777777777777765322 45566666777777777777777777776552 123445555555553 34667
Q ss_pred HHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHH
Q 010057 154 EATDVYKEMIQRGL--------PPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP-DKAACNILIEKCCKAGETRT 224 (519)
Q Consensus 154 ~a~~~~~~m~~~g~--------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~ 224 (519)
+|..+++.+..... ......+..+...+...|++++|.+.|++..+. .| +...+..+...|.+.|++++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 77766665432210 001123445666777889999999999998875 34 45577788889999999999
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCC----CcchhHHHHHH
Q 010057 225 IILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGP----LSIDQGLVLIL 300 (519)
Q Consensus 225 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~ 300 (519)
|...++.+.+.........+...+ .+...++.+.....+...... .+........ ..........+
T Consensus 514 A~~~l~~al~~~P~~~~~~~a~al-~l~~~~~~~~Al~~l~~l~~~---------~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 514 ADALMRRLAQQKPNDPEQVYAYGL-YLSGSDRDRAALAHLNTLPRA---------QWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHhCCch---------hcChhHHHHHHHHhhhHHHHHHHHH
Confidence 999999988755433333333222 222333333332221111000 0000000000 00011234567
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHH
Q 010057 301 LKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVA 380 (519)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 380 (519)
...|+.++|..++.. ...+...+..+...+.+.|++++|+..|+...+.. +.+...+..+...+...|++++|.
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 788999999999882 23455667788889999999999999999999875 446778899999999999999999
Q ss_pred HHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-------CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 010057 381 EIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-------CTATYTALIGVYFSAGSADKALKIYKT 453 (519)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~ 453 (519)
+.++.+.+.. +.+......+..++...|+.++|.++++.+....| +...+..+...+...|++++|++.|++
T Consensus 658 ~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 658 AQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999887653 34455667788889999999999999998866422 123566678889999999999999998
Q ss_pred HH-HCCCCCCccc
Q 010057 454 MC-RKGIHPSLGT 465 (519)
Q Consensus 454 m~-~~g~~p~~~t 465 (519)
.. ..|+.|+...
T Consensus 737 Al~~~~~~~~~p~ 749 (1157)
T PRK11447 737 AMVASGITPTRPQ 749 (1157)
T ss_pred HHhhcCCCCCCCC
Confidence 75 4567776543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-20 Score=173.27 Aligned_cols=299 Identities=14% Similarity=0.100 Sum_probs=242.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHc
Q 010057 108 MHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN---CYTYTVLMEYLVRA 184 (519)
Q Consensus 108 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~ 184 (519)
...+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3355678999999999999998742 3566889999999999999999999999987532222 25678889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhh
Q 010057 185 GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQV 264 (519)
Q Consensus 185 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 264 (519)
|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+...
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------------- 177 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV---------------------- 177 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----------------------
Confidence 99999999999998752 3467789999999999999999999999887754321110
Q ss_pred CCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhH
Q 010057 265 HPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGA 344 (519)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 344 (519)
.....+..+...+...|++++|
T Consensus 178 ----------------------------------------------------------~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 178 ----------------------------------------------------------EIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHhCCCHHHH
Confidence 0112344566677889999999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC
Q 010057 345 LLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED 424 (519)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 424 (519)
...|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+.+......+++.+..+|...|+.++|.+.++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998764 33456788888999999999999999999997653333466788999999999999999999998887
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh---cCChhHHHHHHHHhcc
Q 010057 425 QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK---LGRVSDAEIYRKEKKS 491 (519)
Q Consensus 425 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~---~g~~~~a~~~~~~~~~ 491 (519)
.|+...+..++..+.+.|++++|.++++++.+. .|+..+++.++..+.. .|+.+++...++++.+
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 777777899999999999999999999999887 6898899988887764 4588888888887764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-18 Score=167.44 Aligned_cols=98 Identities=7% Similarity=0.039 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccc-hhHHHHH
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGV-YLGALLI 402 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 402 (519)
+...+..+...+...|++++|+..++...+.. +.+...+..+..++.+.|++++|...++.+.+.+ |+. ..+..+.
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a 359 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAA 359 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHH
Confidence 34455566666666777777777777666543 2234445556666677777777777777666543 322 2233344
Q ss_pred HHHhcCCCcchHHHHhhhCCcC
Q 010057 403 HRLGSARRPVPAAKIFSLLPED 424 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~~~~ 424 (519)
.++...|+.++|...|++..+.
T Consensus 360 ~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 5566677777777777665544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-18 Score=167.17 Aligned_cols=332 Identities=9% Similarity=-0.017 Sum_probs=210.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 148 (519)
...++..+.+.|+++.|..+++........ +...+..++.+....|+++.|...|+++.+... .+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 344455556666666666666666655433 333444444555566666666666666665521 134556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010057 149 NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILI 228 (519)
Q Consensus 149 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 228 (519)
.|++++|...|++..+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 666666666666666531 223445666666666666666666666666543221 22222222 235566666666666
Q ss_pred HHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHH
Q 010057 229 LRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVA 308 (519)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 308 (519)
++.+.+....+..... ..+...+...|+.++
T Consensus 200 ~~~~l~~~~~~~~~~~-------------------------------------------------~~l~~~l~~~g~~~e 230 (656)
T PRK15174 200 ARALLPFFALERQESA-------------------------------------------------GLAVDTLCAVGKYQE 230 (656)
T ss_pred HHHHHhcCCCcchhHH-------------------------------------------------HHHHHHHHHCCCHHH
Confidence 6665554321111100 111223445566666
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhh----HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHH
Q 010057 309 IDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDG----ALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVE 384 (519)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 384 (519)
|...+........ .+...+..+...+...|++++ |+..|+...+.. +.+...+..+...+.+.|++++|...++
T Consensus 231 A~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 231 AIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666666554432 245566667778888888875 788888888764 3356678888889999999999999999
Q ss_pred HHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchh-HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 385 EMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTAT-YTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
...+.. +.+......+..++.+.|++++|...++.+....|+... +..+..++...|++++|++.|++..+.
T Consensus 309 ~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 309 QSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 988764 345556777888888999999999999888776665433 444567788899999999999988876
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-18 Score=156.21 Aligned_cols=429 Identities=11% Similarity=0.058 Sum_probs=288.1
Q ss_pred hhhhHHhhhccCChhHHHHHHHhCCC-CCC----HHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 010057 4 TISNVYKILKYSTWDSAQDLLKNLPI-KWD----SYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGE 78 (519)
Q Consensus 4 ~~~~i~~~~~~~~~~~a~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 78 (519)
.+...+...+.|++.+|++--.-.+. .|+ .....++...+.+++.....-....+. .+--..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~--~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK--NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc--cchHHHHHHHHHHHHHH
Confidence 34445555666777777665543321 122 112222222334444443332222221 13345667777777777
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHH
Q 010057 79 AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSY-TAYMKILFLNDRVKEATD 157 (519)
Q Consensus 79 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~~~~~~a~~ 157 (519)
.|++++|..+++.+.+.... ....|..+..++...|+.+.|.+.|.+..+. .|+.... +.+-..+...|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 77777777777777766332 4567777777777777777777777776654 4444332 233344445677777777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 158 VYKEMIQRGLPPN-CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDK-AACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 158 ~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
.|.+..+. .|. ...|+.|.-.+-..|+...|+..|++... +.|+- ..|-.|...|...+.++.|...+......
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 77766664 343 33566677777777777777777777765 34443 36677777777777777777776655442
Q ss_pred CCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHH
Q 010057 236 RLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSG 315 (519)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (519)
.. +. ...+..+...|...|.++.|...+++
T Consensus 282 rp--n~------------------------------------------------A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 282 RP--NH------------------------------------------------AVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred CC--cc------------------------------------------------hhhccceEEEEeccccHHHHHHHHHH
Confidence 21 11 11334455567778888888888888
Q ss_pred HHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccc
Q 010057 316 IMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGV 395 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (519)
....... -...|+.+..++-..|+..+|...|....... +.-....+.|...+...|.+++|..+|....+-. +--.
T Consensus 312 al~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~a 388 (966)
T KOG4626|consen 312 ALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFA 388 (966)
T ss_pred HHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhh
Confidence 7654322 24568888899988999999999998887654 2234557888889999999999999998887643 2223
Q ss_pred hhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHH
Q 010057 396 YLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLAGL 473 (519)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~ 473 (519)
...+.|...|-.+|++++|...+++..+..|+ ..+|+.+...|-..|+.+.|++.+.+.+.. .|. ...++.|.+.|
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIY 466 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHh
Confidence 45677888888999999999999888777665 468888999999999999999999888865 454 56788888899
Q ss_pred HhcCChhHHHHHHHHhcccCccc
Q 010057 474 EKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 474 ~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
..+|...+|++-+++...+.||.
T Consensus 467 kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 467 KDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred hccCCcHHHHHHHHHHHccCCCC
Confidence 99999999999999998888763
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-17 Score=163.39 Aligned_cols=256 Identities=13% Similarity=-0.012 Sum_probs=166.6
Q ss_pred CCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHh
Q 010057 185 GKYEEALEIFSKMQEAG-VQP-DKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLW 262 (519)
Q Consensus 185 ~~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 262 (519)
+++++|.+.|+...+.+ ..| ....+..+...+...|++++|...++...+.... ..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~--~~-------------------- 365 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR--VT-------------------- 365 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cH--------------------
Confidence 56777777777776643 223 2345666666677777777777777776664321 11
Q ss_pred hhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChh
Q 010057 263 QVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRD 342 (519)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 342 (519)
..+..+...+...|++++|...++...... ..+...+..+...+...|+++
T Consensus 366 ----------------------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~ 416 (615)
T TIGR00990 366 ----------------------------QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFA 416 (615)
T ss_pred ----------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 011223344556677777777777665543 224566777777777888888
Q ss_pred hHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCC
Q 010057 343 GALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLP 422 (519)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 422 (519)
+|+..|++..+.. +.+...+..+..++.+.|++++|...++..++.. +.++..++.+...+...|++++|.+.|++..
T Consensus 417 ~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 417 QAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred HHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888877654 2345556677777788888888888888877653 4456677777788888888888888887765
Q ss_pred cCCCCc-h-------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 423 EDQKCT-A-------TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 423 ~~~~~~-~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
...|+. . .++.....+...|++++|.+++++..+.. +.+...+..+...+.+.|++++|..++++..++.+
T Consensus 495 ~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 495 ELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred hcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 543321 1 11222223344678888888888877663 22344677777888888888888888888776655
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-16 Score=155.36 Aligned_cols=436 Identities=14% Similarity=0.046 Sum_probs=291.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhH
Q 010057 43 HPPMEKAWLFFNWVSRSRGFNHDR--FTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120 (519)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 120 (519)
.|+++.|++.|+...+. .|+. ..+ .++..+...|+.++|...+++.... -..+......+...+...|++++|
T Consensus 47 ~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 47 AGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred CCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 48888888888877533 4442 233 7777777778888888888777721 112233333345677777888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010057 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 121 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 200 (519)
+++|+++.+.... +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 8888888776322 4556667777788888888888888888765 455555544444444455565688888888775
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHH--HHHHHHHhhc--CchhHHHhhhCCCCCcccccch
Q 010057 201 GVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVF--KEALQTFKVA--DENDSLLWQVHPQFSPEFISDN 276 (519)
Q Consensus 201 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 276 (519)
. +-+...+..+..+..+.|-...|.++..+-...-...+...+ ..+....... ....... .....+
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~---------r~~~~d 268 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE---------RFDIAD 268 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh---------hHHHHH
Confidence 3 225567777778888888877777666543321111110000 0000000000 0000000 000000
Q ss_pred hhhhhHHhcc----CCCC------cchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHH
Q 010057 277 DAVEFVTTDI----EGPL------SIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALL 346 (519)
Q Consensus 277 ~~~~~~~~~~----~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 346 (519)
......+... ..+. ......+..+...++..++...++.+...+......+-..+..+|...+++++|+.
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 0011111111 1111 01123455778889999999999999999988777799999999999999999999
Q ss_pred HHHHHHhCC-----CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC-----------Cccch---hHHHHHHHHhc
Q 010057 347 AFEYSVKMD-----LNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH-----------SLGVY---LGALLIHRLGS 407 (519)
Q Consensus 347 ~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~---~~~~l~~~~~~ 407 (519)
+|+.+.... ..++......|.-++...+++++|..+++.+.+... .|++. ....++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999997653 123344467899999999999999999999987321 12211 22345667889
Q ss_pred CCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 010057 408 ARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYR 486 (519)
Q Consensus 408 ~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~ 486 (519)
.|+..+|++.++.+... |.|......+...+...|++.+|.+.++...... +-+..+......++...+++++|..+.
T Consensus 429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999998776 4578899999999999999999999997777662 334566667778889999999999999
Q ss_pred HHhcccCcccc
Q 010057 487 KEKKSIQADAL 497 (519)
Q Consensus 487 ~~~~~~~~~~~ 497 (519)
+.+.+..|+.-
T Consensus 508 ~~l~~~~Pe~~ 518 (822)
T PRK14574 508 DDVISRSPEDI 518 (822)
T ss_pred HHHHhhCCCch
Confidence 99999988754
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-17 Score=139.75 Aligned_cols=408 Identities=16% Similarity=0.191 Sum_probs=271.6
Q ss_pred HHHHHHhc--CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC--ChhHH-HHHHHHHHhCC-------------
Q 010057 35 TVNQVLKT--HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAK--RISSM-KYVFELMQEKG------------- 96 (519)
Q Consensus 35 ~~~~ll~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a-~~~~~~m~~~~------------- 96 (519)
+-|.++.- .|....+.-+|+.| +..|++.+...-..|++.-+-.+ +..-+ ++-|-.|.+.|
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m-~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERM-RSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHH-HhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 34444443 37788888899998 57787777777666665433222 22111 12222222221
Q ss_pred ------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010057 97 ------INIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN 170 (519)
Q Consensus 97 ------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 170 (519)
.+-+..+|..||.++++.-..+.|.+++++-.....+.+..+||.+|.+-.-..+ .+++.+|....+.||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCc
Confidence 1225678899999999998999999999998888778888999988876543332 778889988888999
Q ss_pred HHHHHHHHHHHHHcCCHH----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHH----cCCccCH
Q 010057 171 CYTYTVLMEYLVRAGKYE----EALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRT-IILILRYMKE----NRLALRY 241 (519)
Q Consensus 171 ~~~~~~li~~~~~~~~~~----~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~----~~~~~~~ 241 (519)
..|||+++++.++.|+++ .|.+++.+|++.|+.|...+|..+|..+++-++..+ +..++.++.. ..+.|..
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 999999999999999775 456677888888999999999999998888887754 3444444433 1222211
Q ss_pred HHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcC-
Q 010057 242 PVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKS- 320 (519)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 320 (519)
..+..++...+..+.+..|.+.|..+..-+....
T Consensus 353 ---------------------------------------------p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N 387 (625)
T KOG4422|consen 353 ---------------------------------------------PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN 387 (625)
T ss_pred ---------------------------------------------CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc
Confidence 1112233444455556666666666655544321
Q ss_pred ---CCcc---HHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCcc
Q 010057 321 ---IQLD---SAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLG 394 (519)
Q Consensus 321 ---~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (519)
+.|+ ..-|..+....|+....+.-+..|+.|.-.-+-|+..+...++++..-.+.++-.-++|.+++..|...+
T Consensus 388 ~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 388 WKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 1222 2345677777788888888888888888877778888888888888888888888888888888886666
Q ss_pred chhHHHHHHHHhcCC-Ccc-------------hHHHHhh-------hCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 010057 395 VYLGALLIHRLGSAR-RPV-------------PAAKIFS-------LLPEDQKCTATYTALIGVYFSAGSADKALKIYKT 453 (519)
Q Consensus 395 ~~~~~~l~~~~~~~g-~~~-------------~A~~~~~-------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 453 (519)
......++..+++.. +.. -|..+++ ++..........+...-.+.+.|+.++|.++|..
T Consensus 468 ~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l 547 (625)
T KOG4422|consen 468 SDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGL 547 (625)
T ss_pred HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHH
Confidence 555555555555544 220 1122222 1222122355667777778899999999999998
Q ss_pred HHHCC-CCCCcccHH---HHHHHHHhcCChhHHHHHHHHhccc
Q 010057 454 MCRKG-IHPSLGTFN---VLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 454 m~~~g-~~p~~~t~~---~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
..+.+ -.|-....+ -+++...+....-.|...++-+...
T Consensus 548 ~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 548 FLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 86554 223344444 6666777788888888888877544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.6e-17 Score=162.84 Aligned_cols=408 Identities=9% Similarity=-0.030 Sum_probs=298.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010057 33 SYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLS 112 (519)
Q Consensus 33 ~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 112 (519)
..-|..+..-.|+.++|++++....... +.+...+..+...+.+.|++++|.++|+...+... .+...+..+..++.
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~ 94 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 4557788888899999999999885312 55666799999999999999999999999887632 25677888889999
Q ss_pred hcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010057 113 NAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALE 192 (519)
Q Consensus 113 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 192 (519)
..|+.++|...+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +-+...+..+...+...+..++|++
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 9999999999999998772 22455 8888889999999999999999999863 2255566778888888899999999
Q ss_pred HHHHHHHcCCCCCH------HHHHHHHHHHHh-----cCCh---HHHHHHHHHHHHc-CCccCHH-HHHHHHHHHhhcCc
Q 010057 193 IFSKMQEAGVQPDK------AACNILIEKCCK-----AGET---RTIILILRYMKEN-RLALRYP-VFKEALQTFKVADE 256 (519)
Q Consensus 193 ~~~~m~~~g~~p~~------~~~~~li~~~~~-----~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~~~l~~~~~~~~ 256 (519)
.++.... .|+. .....+++.... .+++ +.|+..++.+.+. ...|... .+..+
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a--------- 239 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA--------- 239 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH---------
Confidence 8876553 2331 111222222221 1223 5677777766653 1111110 11000
Q ss_pred hhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHH
Q 010057 257 NDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQ-LDSAVISTIIEVN 335 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 335 (519)
....+..+...++.++|...|+.+...+.. |+. .-..+..+|
T Consensus 240 ------------------------------------~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y 282 (765)
T PRK10049 240 ------------------------------------RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY 282 (765)
T ss_pred ------------------------------------HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 000122334668899999999998877543 332 222246688
Q ss_pred hccCChhhHHHHHHHHHhCCCCc---CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC-----------Cccc---hhH
Q 010057 336 CDHRRRDGALLAFEYSVKMDLNL---ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH-----------SLGV---YLG 398 (519)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~ 398 (519)
...|++++|+..|+.+.+..... .......+..++...|++++|.++++.+.+..- .|+. ..+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999999987653211 134466677788999999999999999987531 1221 234
Q ss_pred HHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhc
Q 010057 399 ALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLAGLEKL 476 (519)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~ 476 (519)
..+...+...|+.++|+++++++... +.+...+..+...+...|++++|++.+++..+. .|| ...+......+...
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHh
Confidence 56677888999999999999998776 445788999999999999999999999999987 465 55556666778999
Q ss_pred CChhHHHHHHHHhcccCcccc
Q 010057 477 GRVSDAEIYRKEKKSIQADAL 497 (519)
Q Consensus 477 g~~~~a~~~~~~~~~~~~~~~ 497 (519)
|++++|+..++++++..|+..
T Consensus 441 ~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 441 QEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999998887643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-16 Score=157.45 Aligned_cols=194 Identities=6% Similarity=-0.094 Sum_probs=152.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcch
Q 010057 299 ILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPK 378 (519)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 378 (519)
.+...|+.+.|...++.+... .|+...+..+..++.+.|+.++|...|+...+.. +.+...+..+.....+.|++++
T Consensus 518 al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence 345788888888888886543 3334445566677788899999999998888765 2233334444444556699999
Q ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 379 VAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
|...++...+.. |+...+..+...+.+.|+.++|...+++.....| +...++.+..++...|++++|++.|++..+.
T Consensus 595 Al~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 595 ALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999998765 5677888888999999999999999998887755 4678888889999999999999999999887
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccccc
Q 010057 458 GIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALS 498 (519)
Q Consensus 458 g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 498 (519)
. +-+...+..+..++...|++++|+..+++..++.|+...
T Consensus 673 ~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 673 L-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 3 345678888889999999999999999999999886433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-17 Score=148.41 Aligned_cols=379 Identities=12% Similarity=0.102 Sum_probs=303.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhc
Q 010057 36 VNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVT-YTSVMHWLSNA 114 (519)
Q Consensus 36 ~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~ 114 (519)
+..++..-|++++|+.+++.+.+.+ +.....|..+..++...|+.+.|.+.|.+..+. .|+... .+.+-..+-..
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhh
Confidence 3345566699999999999997543 446788999999999999999999999998876 455443 33445556668
Q ss_pred CChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 010057 115 GDVDGAVNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN-CYTYTVLMEYLVRAGKYEEALE 192 (519)
Q Consensus 115 g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~ 192 (519)
|++++|...+.+..+. .|. ...|+.|...+...|+...|++.|++.... .|+ ...|..|...|...+.++.|..
T Consensus 198 Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred cccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHH
Confidence 9999999999988776 444 568999999999999999999999999874 565 4589999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcc
Q 010057 193 IFSKMQEAGVQPD-KAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPE 271 (519)
Q Consensus 193 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 271 (519)
.|.+.... .|+ ...+..+...|...|+++.|+..+++..+..+.
T Consensus 274 ~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~--------------------------------- 318 (966)
T KOG4626|consen 274 CYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN--------------------------------- 318 (966)
T ss_pred HHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC---------------------------------
Confidence 99988764 454 458888888899999999999999988775543
Q ss_pred cccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHH
Q 010057 272 FISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYS 351 (519)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 351 (519)
.+..++.+.......|++.++...+......... .....+.+...|...|.+++|..+|...
T Consensus 319 -----------------F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 319 -----------------FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred -----------------chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 2335667777788889999999999887654322 4556788999999999999999999988
Q ss_pred HhCCCCcCH-HHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCcc-chhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-c
Q 010057 352 VKMDLNLER-TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLG-VYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-T 428 (519)
Q Consensus 352 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 428 (519)
.+- .|.- ...+.|...|-+.|++++|..-|++.++-. |+ ...++.+...|...|+.+.|.+.+.+.....|. .
T Consensus 381 l~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A 456 (966)
T KOG4626|consen 381 LEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA 456 (966)
T ss_pred Hhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH
Confidence 764 3443 448899999999999999999999998754 44 457788888899999999999999988776553 4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhH
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLAGLEKLGRVSD 481 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~ 481 (519)
..++.|...|...|+..+|+.-|+...+. +|| +..+..++.+..-.-+|.+
T Consensus 457 eAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 457 EAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhcccc
Confidence 57889999999999999999999998876 677 4456566655433333333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-15 Score=130.82 Aligned_cols=411 Identities=10% Similarity=0.088 Sum_probs=282.2
Q ss_pred hHHhhhccCChhHHHHHHHhC---CCCCCHHHHHHHHhc---C---------------------------CChHHHHHHH
Q 010057 7 NVYKILKYSTWDSAQDLLKNL---PIKWDSYTVNQVLKT---H---------------------------PPMEKAWLFF 53 (519)
Q Consensus 7 ~i~~~~~~~~~~~a~~~~~~~---~~~p~~~~~~~ll~~---~---------------------------~~~~~A~~~~ 53 (519)
.+...+..|...++.-+++.| ++..+...-..++.- + .+-+.|--+|
T Consensus 121 nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~ 200 (625)
T KOG4422|consen 121 NLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLF 200 (625)
T ss_pred HHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHH
Confidence 344566788888888888888 444444443333321 1 0111122223
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 010057 54 NWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECY 133 (519)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 133 (519)
+.. +.+..++.++|.++++....+.|.+++++-.....+.+..+||.+|.+-.-..+ .+++.+|....+.
T Consensus 201 E~~------PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 201 ETL------PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT 270 (625)
T ss_pred hhc------CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence 222 567889999999999999999999999999988888899999999987654433 7899999999999
Q ss_pred CChhhHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHc--C--C--
Q 010057 134 PTIVSYTAYMKILFLNDRVKE----ATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEE-ALEIFSKMQEA--G--V-- 202 (519)
Q Consensus 134 p~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~--g--~-- 202 (519)
||..|+|+++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++... | +
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 999999999999999998765 56788999999999999999999999999888754 55556665542 2 2
Q ss_pred -CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---ccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchh
Q 010057 203 -QP-DKAACNILIEKCCKAGETRTIILILRYMKENRL---ALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDND 277 (519)
Q Consensus 203 -~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (519)
.| |...|...+..|.+..+.+.|.++..-++...- .++...
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~---------------------------------- 396 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH---------------------------------- 396 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH----------------------------------
Confidence 23 455778889999999999999988776654221 011000
Q ss_pred hhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCC
Q 010057 278 AVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLN 357 (519)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (519)
....+..+....|.....+.....++.|...-.-|+..+...++++....++++-.-+++..+...|..
T Consensus 397 -----------~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 397 -----------RNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 001222344455566666666777777777777788888888888887778887777777777777655
Q ss_pred cCHHHHHHHHHHHHhcC-Ccc-------------hHHHHH-------HHHHhcCCCccchhHHHHHHHHhcCCCcchHHH
Q 010057 358 LERTAYLALIGILIKLN-TFP-------------KVAEIV-------EEMTKAGHSLGVYLGALLIHRLGSARRPVPAAK 416 (519)
Q Consensus 358 ~~~~~~~~l~~~~~~~~-~~~-------------~a~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 416 (519)
.+...-.-++..+++.. ... -|..++ .++. .........+.+.-.+.+.|+.++|.+
T Consensus 466 ~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e 543 (625)
T KOG4422|consen 466 FRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR--AQDWPATSLNCIAILLLRAGRTQKAWE 543 (625)
T ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH--hccCChhHHHHHHHHHHHcchHHHHHH
Confidence 55554444444444443 110 011111 1122 234566777888888999999999999
Q ss_pred HhhhCCcC---CCCchhHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 010057 417 IFSLLPED---QKCTATYT---ALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLE 474 (519)
Q Consensus 417 ~~~~~~~~---~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~ 474 (519)
+|..+.++ -|.....| -++..-.+.+++..|+.+++-|.+.+.+.-...-+-+...|.
T Consensus 544 ~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~ 607 (625)
T KOG4422|consen 544 MLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFA 607 (625)
T ss_pred HHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcC
Confidence 99877443 13333444 556666778999999999999977753322223334444443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-15 Score=154.04 Aligned_cols=475 Identities=11% Similarity=-0.006 Sum_probs=285.5
Q ss_pred HhhhccCChhHHHHHHHhC-CCCCCHHHHHHHHhcCCChHHHHHHHHHHhhcC---------------------------
Q 010057 9 YKILKYSTWDSAQDLLKNL-PIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSR--------------------------- 60 (519)
Q Consensus 9 ~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~ll~~~~~~~~A~~~~~~~~~~~--------------------------- 60 (519)
..+.+.|++++|+..+++. ...|+...+..++...+++.+|.++++++....
T Consensus 86 ~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eq 165 (987)
T PRK09782 86 EAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPV 165 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHH
Confidence 3455666666666666665 445555555554554556666666666554332
Q ss_pred ----------CCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhhHHHHHHHHH
Q 010057 61 ----------GFNHDRFTYTTM-LDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN-AGDVDGAVNIWEEMK 128 (519)
Q Consensus 61 ----------~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~ 128 (519)
...|+..+.... .+.|.+.+++++|.+++..+.+.+.. +..-...|-.+|.. .++ +.+..+++.
T Consensus 166 Al~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~-- 241 (987)
T PRK09782 166 ARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ-- 241 (987)
T ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch--
Confidence 112222222222 44555555555555555555555432 33334444444444 233 444444332
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHH------------------------------HH
Q 010057 129 LKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLP-PNCYTYT------------------------------VL 177 (519)
Q Consensus 129 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~------------------------------~l 177 (519)
.++-+...+..+...|.+.|+.++|.++++++...-.. |+..++. .+
T Consensus 242 --~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (987)
T PRK09782 242 --GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGAT 319 (987)
T ss_pred --hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHH
Confidence 12235566667777777777777777777776543111 2222211 22
Q ss_pred HHHHHHcCCHHHHHHHHHHH--------HHcCC--------------------CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 010057 178 MEYLVRAGKYEEALEIFSKM--------QEAGV--------------------QPDKAACNILIEKCCKAGETRTIILIL 229 (519)
Q Consensus 178 i~~~~~~~~~~~a~~~~~~m--------~~~g~--------------------~p~~~~~~~li~~~~~~g~~~~a~~~~ 229 (519)
+..+.+.++++.++++...- .-.+. +-+.....-+--...+.|+.++|.+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~ 399 (987)
T PRK09782 320 LPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLL 399 (987)
T ss_pred HHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 44555566666555443210 00000 113333333444577899999999999
Q ss_pred HHHHHc--CCccCHHHHHHHHHHHhhcCchhHHHhh--h-C---CCCCccc---c-cchhhhhhHHhccCC-----CCcc
Q 010057 230 RYMKEN--RLALRYPVFKEALQTFKVADENDSLLWQ--V-H---PQFSPEF---I-SDNDAVEFVTTDIEG-----PLSI 292 (519)
Q Consensus 230 ~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~-~---~~~~~~~---~-~~~~~~~~~~~~~~~-----~~~~ 292 (519)
+..... +..++......+...+...+..+...+. + . ....... . .....-......... ....
T Consensus 400 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a 479 (987)
T PRK09782 400 LQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA 479 (987)
T ss_pred HHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH
Confidence 987762 2333444555666777666553322221 1 0 0000000 0 111122222222222 2233
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 010057 293 DQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIK 372 (519)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (519)
+..+...+.. ++..+|...+....... |+......+...+...|++++|...|+.+... +|+...+..+..++.+
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~ 554 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHH
Confidence 4455555555 78888888777665543 55544444455556899999999999987654 3445556677788899
Q ss_pred cCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 010057 373 LNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYK 452 (519)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 452 (519)
.|++++|...++...+.. +.....+..+.......|++++|...+++..+..|+...|..+..++.+.|++++|+..|+
T Consensus 555 ~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred CCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999998865 3333344444455556799999999999998877888899999999999999999999999
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 453 TMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 453 ~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
+..+.. +.+...+..+..++...|+.++|...+++..++.|+.
T Consensus 634 ~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 634 AALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999883 3346677777788999999999999999999988864
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.1e-16 Score=156.24 Aligned_cols=407 Identities=9% Similarity=-0.011 Sum_probs=299.2
Q ss_pred hhHHhhhccCChhHHHHHHHhC-CCCCCHH-HHHHH---HhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 010057 6 SNVYKILKYSTWDSAQDLLKNL-PIKWDSY-TVNQV---LKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAK 80 (519)
Q Consensus 6 ~~i~~~~~~~~~~~a~~~~~~~-~~~p~~~-~~~~l---l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 80 (519)
+-+......|+.++|++++.+. +..|... .+..+ +...|++++|.++|+...... +.+...+..+...+...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCC
Confidence 4455667889999999999998 4344433 23333 445599999999999986543 556777888889999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010057 81 RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYK 160 (519)
Q Consensus 81 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (519)
++++|...++...+... .+.. +..+..++...|+.++|+..+++..+.... +...+..+..++...+..+.|++.++
T Consensus 98 ~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999988733 2566 888899999999999999999999987432 55666778888889999999999998
Q ss_pred HHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcC
Q 010057 161 EMIQRGLPPNC------YTYTVLMEYLV-----RAGKY---EEALEIFSKMQEA-GVQPDKA-AC----NILIEKCCKAG 220 (519)
Q Consensus 161 ~m~~~g~~p~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~m~~~-g~~p~~~-~~----~~li~~~~~~g 220 (519)
.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+.++...|
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 6664 2332 11222222222 22234 7788888888754 2233321 11 11134556779
Q ss_pred ChHHHHHHHHHHHHcCCc-cCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHH
Q 010057 221 ETRTIILILRYMKENRLA-LRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLI 299 (519)
Q Consensus 221 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (519)
++++|...|+.+.+.+.. |+... ..+...
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~a~--------------------------------------------------~~la~~ 281 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPWAQ--------------------------------------------------RWVASA 281 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHHHH--------------------------------------------------HHHHHH
Confidence 999999999998886532 22211 113446
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCC-----------CcCH---HH
Q 010057 300 LLKKKNLVAIDSLLSGIMDKSIQL---DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDL-----------NLER---TA 362 (519)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~ 362 (519)
+...|+.++|...++.+....... .......+..++...|++++|...++.+.+... .|+. ..
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 778899999999999987643221 134566677788999999999999999887531 1332 24
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhc
Q 010057 363 YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSA 441 (519)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~ 441 (519)
+..+...+...|++++|+++++.+.... +.+...+..+...+...|++++|++.++++....|+ ...+..+...+.+.
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 5667788899999999999999998764 556788899999999999999999999998887554 66777888889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 010057 442 GSADKALKIYKTMCRKGIHPSLGTFNVLLAGL 473 (519)
Q Consensus 442 g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~ 473 (519)
|++++|..+++++++. .|+......+-..+
T Consensus 441 ~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 441 QEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 9999999999999987 67766554444444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-15 Score=149.47 Aligned_cols=372 Identities=10% Similarity=-0.035 Sum_probs=242.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 148 (519)
+......+.+.|++++|...|+...+. .|+...|..+..+|...|++++|++.++...+.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344555666677777777777776654 4566667777777777777777777777766652 1145566667777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----------------H---------HH-cC
Q 010057 149 NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSK-----------------M---------QE-AG 201 (519)
Q Consensus 149 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~-----------------m---------~~-~g 201 (519)
.|++++|+.-|......+-..+. ....++..+........+...++. . .. ..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNE-QSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 77777777666555433111111 111111111110000111111100 0 00 00
Q ss_pred CCCCH-HHHHHHHHH---HHhcCChHHHHHHHHHHHHcCC-ccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccch
Q 010057 202 VQPDK-AACNILIEK---CCKAGETRTIILILRYMKENRL-ALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDN 276 (519)
Q Consensus 202 ~~p~~-~~~~~li~~---~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (519)
..+.. ..+..+... ....+++++|.+.|+...+.+. .|....
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~--------------------------------- 332 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAI--------------------------------- 332 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHH---------------------------------
Confidence 01110 001111111 1234689999999999987652 221111
Q ss_pred hhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCC
Q 010057 277 DAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDL 356 (519)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 356 (519)
.+..+...+...|+.++|...++....... -....|..+...+...|++++|+..|+.+.+..
T Consensus 333 ---------------a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 395 (615)
T TIGR00990 333 ---------------ALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN- 395 (615)
T ss_pred ---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 223344567789999999999999876532 135577788888899999999999999998765
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHH
Q 010057 357 NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALI 435 (519)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li 435 (519)
+.+...|..+...+...|++++|...|+..++.. +.+...+..+...+.+.|++++|...|+......| ++..|+.+.
T Consensus 396 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg 474 (615)
T TIGR00990 396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYG 474 (615)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 3456788899999999999999999999999875 44566777888899999999999999998876544 578899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCccc------HHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 436 GVYFSAGSADKALKIYKTMCRKGIHPSLGT------FNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.++...|++++|++.|++..+..-..+... ++.....+...|++++|.+++++..++.|+
T Consensus 475 ~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 475 ELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 999999999999999999987732111111 111222334469999999999999888664
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-14 Score=143.74 Aligned_cols=407 Identities=11% Similarity=0.021 Sum_probs=282.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 010057 76 FGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 155 (519)
..+.|+++.|...|.+..+....-....+ .++..+...|+.++|+..+++.... ..........+...+...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 45899999999999999987433112344 8888899999999999999998721 111222333335688889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
.++|+++.+.. +-+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 99999999873 235677778889999999999999999999874 566666655555555566776799999999987
Q ss_pred CCccCHHHHHHHHHHHhhcCchhHHHhhhCCC---CCccc---ccchhhhhhHHhccCCCCcchhHHHHHHHhcCC---H
Q 010057 236 RLALRYPVFKEALQTFKVADENDSLLWQVHPQ---FSPEF---ISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKN---L 306 (519)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~ 306 (519)
.+. +...+.....++.+.+-.......+... +.... +....+.....-....... .... .
T Consensus 199 ~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~----------~~~r~~~~ 267 (822)
T PRK14574 199 APT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS----------ETERFDIA 267 (822)
T ss_pred CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc----------chhhHHHH
Confidence 633 3444455556666555444433322211 11100 0011111111000000000 1112 2
Q ss_pred HHHHHHHHHHHhc-CCCcc-----HHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHH
Q 010057 307 VAIDSLLSGIMDK-SIQLD-----SAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVA 380 (519)
Q Consensus 307 ~~a~~~~~~~~~~-~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 380 (519)
+.+..-++.+... +..|. ....--.+-++...++..++++.|+.+...+.+....+-..+..+|...+++++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 3333344444331 22232 12233455577888999999999999999886655567889999999999999999
Q ss_pred HHHHHHHhcCC-----CccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-------------C---chhHHHHHHHHH
Q 010057 381 EIVEEMTKAGH-----SLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-------------C---TATYTALIGVYF 439 (519)
Q Consensus 381 ~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~---~~~~~~li~~~~ 439 (519)
.++..+....- +++......|..+|...+++++|..+++.+.+..| | ...+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 99999976431 22333357889999999999999999998876433 1 123456788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccc
Q 010057 440 SAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSK 499 (519)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 499 (519)
..|+..+|.+.++++.... +-|......+.+.+...|.+.+|++.++....+.|+....
T Consensus 428 ~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~ 486 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLIL 486 (822)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHH
Confidence 9999999999999998774 6678888899999999999999999999998887765433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-13 Score=131.78 Aligned_cols=428 Identities=15% Similarity=0.153 Sum_probs=269.6
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhhHHH
Q 010057 45 PMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGIN--IDAVTYTSVMHWLSNAGDVDGAVN 122 (519)
Q Consensus 45 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~ 122 (519)
.+..+.+.+...-... +.|+...+.|-..|.-.|+++.++.+...+...... .-...|-.+.++|...|++++|..
T Consensus 251 s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 3445556555554333 456677788888888889999999888888765321 123457778888889999999999
Q ss_pred HHHHHHHCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHH
Q 010057 123 IWEEMKLKECYPTI--VSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG----KYEEALEIFSK 196 (519)
Q Consensus 123 ~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~ 196 (519)
.|.+.... .||. ..+--+...+.+.|+++.+...|+..... .+-+..|...|...|...+ ..+.|..++..
T Consensus 329 yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 329 YYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 88877665 3343 34456777888888888888888887765 1224445555555555553 23444444444
Q ss_pred HHHc-------------------------------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---C
Q 010057 197 MQEA-------------------------------------GVQPDKAACNILIEKCCKAGETRTIILILRYMKEN---R 236 (519)
Q Consensus 197 m~~~-------------------------------------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~ 236 (519)
..+. +-.+.+...|.+...+...|+++.|...|...... .
T Consensus 406 ~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 3332 22233344444444444555555555555544433 1
Q ss_pred CccCHH-----HHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccC-CCCcchhHHHH--HHHhcCCHHH
Q 010057 237 LALRYP-----VFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIE-GPLSIDQGLVL--ILLKKKNLVA 308 (519)
Q Consensus 237 ~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~--~~~~~~~~~~ 308 (519)
..++.. |....+..+..... ....+...+..... .+.-+...+-. +....+....
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~-----------------~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELH-----------------DTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhh-----------------hhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHH
Confidence 111110 00111111100000 00111111222222 22222222222 2233467777
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhC-CCCcCHHHHHHHHHHHHh------------cCC
Q 010057 309 IDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM-DLNLERTAYLALIGILIK------------LNT 375 (519)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~ 375 (519)
|...++.....+ ..++..++.+...+.+...+..|.+-|....+. ...+|..+...|.+.|.. .+.
T Consensus 549 a~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 549 ASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence 877777766543 224444555555677777788888877666554 223566666666665543 234
Q ss_pred cchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 376 FPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTM 454 (519)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 454 (519)
.++|+++|...++.. +.|.+..|-+.-.++.+|++.+|..+|..+.+... +..+|-.+.++|..+|+|..|+++|+.-
T Consensus 628 ~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 668999999998876 56888888899999999999999999999887643 5778999999999999999999999876
Q ss_pred HHC-CCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 455 CRK-GIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 455 ~~~-g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
.+. +-.-+......|.+++.+.|.+.+|.+.+.....+.|..
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence 554 445578889999999999999999999999888776653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.4e-11 Score=113.45 Aligned_cols=484 Identities=11% Similarity=0.036 Sum_probs=252.2
Q ss_pred hhhHHhhhccCChhHHHHHHHhC-----CCCCCHHHHH-HHHhcCCChHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 010057 5 ISNVYKILKYSTWDSAQDLLKNL-----PIKWDSYTVN-QVLKTHPPMEKAWLFFNWVSRSRGFNH-DRFTYTTMLDIFG 77 (519)
Q Consensus 5 ~~~i~~~~~~~~~~~a~~~~~~~-----~~~p~~~~~~-~ll~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~ 77 (519)
++..+.....+++..|+.+|+.. ...||+.+-. .-+-.++..+.|+..|..+.+- .| ++.++..|...-.
T Consensus 168 lGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL---dp~~v~alv~L~~~~l 244 (1018)
T KOG2002|consen 168 LGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL---DPTCVSALVALGEVDL 244 (1018)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc---ChhhHHHHHHHHHHHH
Confidence 34444445556666666666653 2223332211 1112335555666666555422 22 2222222222222
Q ss_pred hcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCH
Q 010057 78 EAK---RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECY--PTIVSYTAYMKILFLNDRV 152 (519)
Q Consensus 78 ~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~ 152 (519)
... .+..+..++...-+.+-. |+...+.|.+.|.-.|+++.++.+...+...... .-...|-.+.++|-..|++
T Consensus 245 ~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ 323 (1018)
T KOG2002|consen 245 NFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDF 323 (1018)
T ss_pred HccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccH
Confidence 222 233444444443333222 5566666777777777777777776666554211 0133466666777777777
Q ss_pred HHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChHHHH
Q 010057 153 KEATDVYKEMIQRGLPPNC--YTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAG----ETRTII 226 (519)
Q Consensus 153 ~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~a~ 226 (519)
++|...|.+..+. .||. ..+--|...|.+.|+.+.+...|+.+... .+-+..|...|...|+..+ ..+.|.
T Consensus 324 ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~ 400 (1018)
T KOG2002|consen 324 EKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKAS 400 (1018)
T ss_pred HHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHH
Confidence 7777777666654 3333 23344666777777777777777777664 1223445556655565554 334444
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhh-hhHHhccCCCCcchhHHHHHHHhcCC
Q 010057 227 LILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAV-EFVTTDIEGPLSIDQGLVLILLKKKN 305 (519)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (519)
.++....+.. ..+...+..+-..+......-.+ . ....+. .........++.+.+.+...+...|+
T Consensus 401 ~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL-~-----------~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~ 467 (1018)
T KOG2002|consen 401 NVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASL-D-----------AYGNALDILESKGKQIPPEVLNNVASLHFRLGN 467 (1018)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHH-H-----------HHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC
Confidence 4444444332 11222222222222221111100 0 000001 11122223566677778888888888
Q ss_pred HHHHHHHHHHHHhc---CCCccH------HHHHHHHHHHhccCChhhHHHHHHHHHhCCC--------------------
Q 010057 306 LVAIDSLLSGIMDK---SIQLDS------AVISTIIEVNCDHRRRDGALLAFEYSVKMDL-------------------- 356 (519)
Q Consensus 306 ~~~a~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------------------- 356 (519)
++.|...|...... ...++. .+-..+...+-..++.+.|.+.|..+.+...
T Consensus 468 ~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ 547 (1018)
T KOG2002|consen 468 IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLY 547 (1018)
T ss_pred hHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcH
Confidence 88888888765543 122222 1112233333444455566666655544320
Q ss_pred -------------CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcC-CCccchhHHHHHHHHhc------------CCC
Q 010057 357 -------------NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAG-HSLGVYLGALLIHRLGS------------ARR 410 (519)
Q Consensus 357 -------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~ 410 (519)
.-++..++.+...+.+...+..|.+-|..+.+.- ..+|+++.-+|.+.|.. .+.
T Consensus 548 ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 548 EASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence 1222223333333444444444444444333321 12455555555554321 233
Q ss_pred cchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 010057 411 PVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEK 489 (519)
Q Consensus 411 ~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~ 489 (519)
.++|.++|.++... +.|...-|.+.-.++..|++.+|..+|.+..+... -+..+|-.+..+|...|++..|.+.|+..
T Consensus 628 ~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777766554 55777778888889999999999999999998853 35668888999999999999999999877
Q ss_pred cccCcccccccccchHHHHhhhh
Q 010057 490 KSIQADALSKDAVPMEEKICDLL 512 (519)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~i~~~~ 512 (519)
....- ..+.+..-+.+....
T Consensus 707 lkkf~---~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 707 LKKFY---KKNRSEVLHYLARAW 726 (1018)
T ss_pred HHHhc---ccCCHHHHHHHHHHH
Confidence 55422 344444444444433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.5e-12 Score=110.82 Aligned_cols=428 Identities=12% Similarity=0.092 Sum_probs=266.4
Q ss_pred ChHHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhh
Q 010057 45 PMEKAWLFFNWVSRSRGFNHDR-FTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDA----VTYTSVMHWLSNAGDVDG 119 (519)
Q Consensus 45 ~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~ 119 (519)
-..+|+..|+-+++.. .-||. ..-..+...+.+...+.+|.+.+......-...+. .+.+.+--.+.+.|+++.
T Consensus 216 m~~ealntyeiivknk-mf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~d 294 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNK-MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDD 294 (840)
T ss_pred HHHHHhhhhhhhhccc-ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchh
Confidence 3456777777765433 33333 22334455677788899999999887765222222 344445556778999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------------CHHHHHH-----HHHHHH
Q 010057 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPP------------NCYTYTV-----LMEYLV 182 (519)
Q Consensus 120 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p------------~~~~~~~-----li~~~~ 182 (519)
|+..|+...+. .||..+--.|+-++.--|+.++..+.|..|..-...| +....+. .++-.-
T Consensus 295 ainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~e 372 (840)
T KOG2003|consen 295 AINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNME 372 (840)
T ss_pred hHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHH
Confidence 99999998776 6787766666667777899999999999998643322 2222222 222222
Q ss_pred HcC--CHHHHHHHHHHHHHcCCCCCHHH-------------HH--------HHHHHHHhcCChHHHHHHHHHHHHcCCcc
Q 010057 183 RAG--KYEEALEIFSKMQEAGVQPDKAA-------------CN--------ILIEKCCKAGETRTIILILRYMKENRLAL 239 (519)
Q Consensus 183 ~~~--~~~~a~~~~~~m~~~g~~p~~~~-------------~~--------~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 239 (519)
+.+ +.++++-.-..+..--+.||... +. .-..-+.+.|+++.|.+++.-..+.+-..
T Consensus 373 k~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~ 452 (840)
T KOG2003|consen 373 KENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKT 452 (840)
T ss_pred HhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchh
Confidence 222 22233222222222222232210 00 11235889999999999999888766543
Q ss_pred CHHHHHHHHHH-HhhcCch-hH----------------HHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHH---
Q 010057 240 RYPVFKEALQT-FKVADEN-DS----------------LLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVL--- 298 (519)
Q Consensus 240 ~~~~~~~~l~~-~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 298 (519)
.+..-..+... |...++. .+ ....-...+....++.+.+..++......+.+-...+..
T Consensus 453 ~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl 532 (840)
T KOG2003|consen 453 ASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL 532 (840)
T ss_pred hHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc
Confidence 33222111111 1111111 00 011111122222333444455555555554444444333
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcch
Q 010057 299 ILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPK 378 (519)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 378 (519)
.+-..|++++|...|-.+..- +.-+..+...+.+.|-...++.+|++++.+... -++.|+..+.-|...|-+.|+-..
T Consensus 533 t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhh
Confidence 455677778877777665421 122445566666777777788888888766543 245577778888889999998888
Q ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Q 010057 379 VAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFS-AGSADKALKIYKTMCRK 457 (519)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 457 (519)
|.+.+-+--+. ++.+..+..-|..-|....-+++|+..|++..-..|+..-|..||..|.+ .|++++|+.+|+....+
T Consensus 611 afq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 611 AFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 87776655442 46677777777777888888899999999887778999999998887665 79999999999988765
Q ss_pred CCCCCcccHHHHHHHHHhcCCh
Q 010057 458 GIHPSLGTFNVLLAGLEKLGRV 479 (519)
Q Consensus 458 g~~p~~~t~~~l~~~~~~~g~~ 479 (519)
++-|..++..|++.|...|..
T Consensus 690 -fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 690 -FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred -CccchHHHHHHHHHhccccch
Confidence 677889999999999888853
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-12 Score=118.20 Aligned_cols=294 Identities=11% Similarity=0.094 Sum_probs=209.5
Q ss_pred cCChhhHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHH
Q 010057 114 AGDVDGAVNIWEEMKLKECYPTIVS-YTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYT--VLMEYLVRAGKYEEA 190 (519)
Q Consensus 114 ~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~~~~~a 190 (519)
.|+++.|.+.+....+.. ++... |.....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998887765542 12222 333344457889999999999998874 55654333 336688889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCc
Q 010057 191 LEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSP 270 (519)
Q Consensus 191 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 270 (519)
...++.+.+.. +-+...+..+...|.+.|+++.|.+++..+.+.+..+...
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~---------------------------- 223 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH---------------------------- 223 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH----------------------------
Confidence 99999998764 2356688888899999999999999999888865431100
Q ss_pred ccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHH
Q 010057 271 EFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEY 350 (519)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (519)
+.++. ...|..++.......+.+...++++.
T Consensus 224 ------------------------------------------~~~l~-------~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 224 ------------------------------------------RAMLE-------QQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred ------------------------------------------HHHHH-------HHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 00000 01222222222333344555555555
Q ss_pred HHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-Cch
Q 010057 351 SVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTA 429 (519)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 429 (519)
+.+. .+.++.....+..++...|+.++|.+++....+. ++++... ++.+....++.+++.+..+...+..| |+.
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~ 329 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPL 329 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHH
Confidence 4332 2456677888899999999999999999998874 3555322 33444456888899988887766544 567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
.+..+...|.+.|++++|.+.|+++.+. .|+..++..+..++.+.|+.++|.+++++...+....
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~ 394 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQN 394 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Confidence 7889999999999999999999999987 7999999999999999999999999999887665433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-11 Score=115.92 Aligned_cols=284 Identities=12% Similarity=0.060 Sum_probs=204.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHH--HHHHHHHhcCCHHHH
Q 010057 79 AKRISSMKYVFELMQEKGINIDAVT-YTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYT--AYMKILFLNDRVKEA 155 (519)
Q Consensus 79 ~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~~~~~~a 155 (519)
.|+++.|++.+....+..- ++.. |.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 5999999988887766532 2333 333345558999999999999999876 45554333 336688899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCChHHHHHH
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKA-------ACNILIEKCCKAGETRTIILI 228 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~li~~~~~~g~~~~a~~~ 228 (519)
.+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999874 3367788899999999999999999999999876543221 112222222222222222222
Q ss_pred HHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHH
Q 010057 229 LRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVA 308 (519)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 308 (519)
++.
T Consensus 252 w~~----------------------------------------------------------------------------- 254 (398)
T PRK10747 252 WKN----------------------------------------------------------------------------- 254 (398)
T ss_pred HHh-----------------------------------------------------------------------------
Confidence 222
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 010057 309 IDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTK 388 (519)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (519)
+.. ..+.+......+..++...|+.++|.++++...+. +|++... ++.+....++.+++.+..+...+
T Consensus 255 -------lp~-~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 255 -------QSR-KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred -------CCH-HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh
Confidence 111 11235566677778888889999999999888773 4444221 23334455888889998888887
Q ss_pred cCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 389 AGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 389 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
.. +-|+....++...+.+.+++++|.+.|+...+..|+...|..+..++.+.|+.++|.+++++-...
T Consensus 323 ~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 323 QH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 64 456667888888899999999999999998888888888889999999999999999999887543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.6e-10 Score=102.04 Aligned_cols=381 Identities=14% Similarity=0.041 Sum_probs=210.0
Q ss_pred CChhHHHHHHHhC-CCCCCHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH--
Q 010057 15 STWDSAQDLLKNL-PIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFEL-- 91 (519)
Q Consensus 15 ~~~~~a~~~~~~~-~~~p~~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-- 91 (519)
...++|+-++.+. ...|.+.-.-..+....-++.|..+++... ..++.+..+|-+-...=-.+|+.+.+.++.++
T Consensus 390 E~~~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaR--e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl 467 (913)
T KOG0495|consen 390 EEPEDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAR--EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGL 467 (913)
T ss_pred cChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH--hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444455555555 334444444444444455666777777663 23455666776666666667777777766654
Q ss_pred --HHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 010057 92 --MQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT--IVSYTAYMKILFLNDRVKEATDVYKEMIQRGL 167 (519)
Q Consensus 92 --m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 167 (519)
+...|+..+..-|-.=...|-+.|.+-.+..+.......|+.-. ..||+.-...|.+.+.++-|..+|...++- .
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-f 546 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-F 546 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-c
Confidence 34567777777777777777777777777777777666655422 346777777777777777777777777664 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHH
Q 010057 168 PPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEA 247 (519)
Q Consensus 168 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 247 (519)
+-+...|......=-..|..+....+|++.... .+-....|.....-+-..||...|..++....+.... +......+
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaa 624 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAA 624 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 334556666666666667777777777777664 2234445555556666677777777777776665443 22222222
Q ss_pred HHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HH
Q 010057 248 LQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLD-SA 326 (519)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 326 (519)
+.......+.+..-..+. ......+...++..-+...--.++.++|.+++++..+. .|+ ..
T Consensus 625 vKle~en~e~eraR~lla----------------kar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~K 686 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLA----------------KARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHK 686 (913)
T ss_pred HHHhhccccHHHHHHHHH----------------HHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHH
Confidence 222222222211110000 00011222333333444444455666666666554432 222 22
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHh
Q 010057 327 VISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLG 406 (519)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (519)
.|..+.+.+-+.++.+.|.+.|..-.+. ++-....|..+...--+.|++-+|..+++...-.+ +.+...|-..|.+-.
T Consensus 687 l~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~El 764 (913)
T KOG0495|consen 687 LWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMEL 764 (913)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHH
Confidence 3444444555555555555555433221 12222335555555555566666666666665544 445566666666666
Q ss_pred cCCCcchHHHHhhh
Q 010057 407 SARRPVPAAKIFSL 420 (519)
Q Consensus 407 ~~g~~~~A~~~~~~ 420 (519)
+.|+.+.|..+..+
T Consensus 765 R~gn~~~a~~lmak 778 (913)
T KOG0495|consen 765 RAGNKEQAELLMAK 778 (913)
T ss_pred HcCCHHHHHHHHHH
Confidence 66666666655543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.8e-11 Score=111.79 Aligned_cols=352 Identities=11% Similarity=0.099 Sum_probs=224.6
Q ss_pred cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010057 42 THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121 (519)
Q Consensus 42 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 121 (519)
+.|+.++|.+++.++.+.. +.+...|-.|...|-+.|+.+++...+-..-..... |...|..+-....+.|.++.|.
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHH
Confidence 4499999999999998654 667888999999999999999999887555444333 6788999999999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHH
Q 010057 122 NIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYT----VLMEYLVRAGKYEEALEIFSKM 197 (519)
Q Consensus 122 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~~~~~~~~~~a~~~~~~m 197 (519)
-.|.+..+.. +++...+---...|-+.|+...|.+-|.++.....+.|..-+. .++..+...++.+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999998873 3354455556678889999999999999999863222222222 3456677778889999988887
Q ss_pred HHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccch
Q 010057 198 QEA-GVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDN 276 (519)
Q Consensus 198 ~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (519)
... +-..+...++.++..+.+...++.+...+..+......++..-+..-- .+.....
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~------------~~~~~~~--------- 365 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE------------RRREEPN--------- 365 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh------------hcccccc---------
Confidence 663 234455678888889999999999988888776644433332210000 0000000
Q ss_pred hhhhhHHhccCCCCcch-hHHHHHHHhcCCHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhccCChhhHHHHHHHHHh
Q 010057 277 DAVEFVTTDIEGPLSID-QGLVLILLKKKNLVAIDSLLSGIMDKS--IQLDSAVISTIIEVNCDHRRRDGALLAFEYSVK 353 (519)
Q Consensus 277 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 353 (519)
.+....-..+..+. ..++.+..+.+..+....++.-+.... +.-+...|.-+..+|...|++.+|+.+|..+..
T Consensus 366 ---~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 366 ---ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred ---ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 00000000111111 244445555555555555665555555 233445566666666666666666666666665
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCC
Q 010057 354 MDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLP 422 (519)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 422 (519)
...--+...|-.+..+|...|..++|.+.|...+... +.+...--.|...+.+.|+.++|.+.++.+.
T Consensus 443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 5433344556666666666666666666666666543 2222233344445556666666666666543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=127.33 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=23.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 010057 73 LDIFGEAKRISSMKYVFELMQEKG-INIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR 151 (519)
Q Consensus 73 i~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 151 (519)
...+.+.|++++|.++++...... ..-+...|..+...+...++.+.|.+.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 344444455555555553322221 1112223333333444444555555555554443221 23334444433 34455
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010057 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA-GVQPDKAACNILIEKCCKAGETRTIILILR 230 (519)
Q Consensus 152 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 230 (519)
+++|.+++....+. .+++..+..++..+.+.++++++.++++.+... ....+...|..+...+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555544443332 133344444444445555555555555544332 122334444444444555555555555544
Q ss_pred HHHH
Q 010057 231 YMKE 234 (519)
Q Consensus 231 ~~~~ 234 (519)
...+
T Consensus 171 ~al~ 174 (280)
T PF13429_consen 171 KALE 174 (280)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-09 Score=96.56 Aligned_cols=392 Identities=11% Similarity=0.075 Sum_probs=251.4
Q ss_pred hhccCChhHHHHHHHhC-CCCCCH--HH--HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHH
Q 010057 11 ILKYSTWDSAQDLLKNL-PIKWDS--YT--VNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSM 85 (519)
Q Consensus 11 ~~~~~~~~~a~~~~~~~-~~~p~~--~~--~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 85 (519)
=.++..+..|..+|++. ..-|-+ .= |..+=...|+...|.++|+... ...|+...|++.|+.=.+.+.++.|
T Consensus 117 Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeiera 193 (677)
T KOG1915|consen 117 EMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERA 193 (677)
T ss_pred HHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHH
Confidence 34555666666666665 222222 11 2222233477777777777553 2477777777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHH----HhcCCHHHHHHHHHH
Q 010057 86 KYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKIL----FLNDRVKEATDVYKE 161 (519)
Q Consensus 86 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~~~~~~a~~~~~~ 161 (519)
..+++...-. .|++.+|-...+.=.++|....|..+|+...+. --|...-..+..++ ..+..++.|.-+|.-
T Consensus 194 R~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyky 269 (677)
T KOG1915|consen 194 RSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKY 269 (677)
T ss_pred HHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777654 477777777777777777777777777766543 11222222233333 335556666666666
Q ss_pred HHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH--------HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 162 MIQRGLPPN--CYTYTVLMEYLVRAGKYEEALEIF--------SKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 162 m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~--------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
.++. ++-+ ...|..+...=-+.|+.....+.. +.+.+. -+-|-.+|--.++.-...|+.+...++|+.
T Consensus 270 Ald~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yEr 347 (677)
T KOG1915|consen 270 ALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYER 347 (677)
T ss_pred HHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6654 2222 344555555445556544443332 222222 233555666666666677777777777777
Q ss_pred HHHcCCccCHHHH-HHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHH
Q 010057 232 MKENRLALRYPVF-KEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAID 310 (519)
Q Consensus 232 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 310 (519)
....-++.....+ ...+-. ..+..+..-....|++.+.
T Consensus 348 AIanvpp~~ekr~W~RYIYL-----------------------------------------WinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 348 AIANVPPASEKRYWRRYIYL-----------------------------------------WINYALYEELEAEDVERTR 386 (677)
T ss_pred HHccCCchhHHHHHHHHHHH-----------------------------------------HHHHHHHHHHHhhhHHHHH
Confidence 6654333211111 000000 1233444555678888899
Q ss_pred HHHHHHHhcCCCc-cHHHHHHHHHHH----hccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 010057 311 SLLSGIMDKSIQL-DSAVISTIIEVN----CDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEE 385 (519)
Q Consensus 311 ~~~~~~~~~~~~~-~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 385 (519)
.+++...+ +.| ...||..+--.| .++.++..|.+++.... |..|-..+|...|..-.+.++++.+..++..
T Consensus 387 ~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 387 QVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99988876 344 344555444444 45568889999888776 6778889999999999999999999999999
Q ss_pred HHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 386 MTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK---CTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
.++.+ +-+..++.-....-...|+.+.|..+|+...+.+. -...|-+.|..-...|.+++|..+|+++++.
T Consensus 463 fle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 463 FLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 99876 45777777777777889999999999998766421 1457778888888899999999999999876
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=130.29 Aligned_cols=159 Identities=16% Similarity=0.068 Sum_probs=90.6
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcC
Q 010057 330 TIIEVNCDHRRRDGALLAFEYSVKMD-LNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSA 408 (519)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (519)
.++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.++...+.. +.+......++..+...
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~ 193 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDM 193 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHC
Confidence 33444444555555555555544322 23455556666666777777777777777777654 23455666677777777
Q ss_pred CCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 010057 409 RRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRK 487 (519)
Q Consensus 409 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~ 487 (519)
|+.+++.++++..... +.|+..|..+..+|...|++++|+..|++..+.. +.|+.....+..++...|+.++|.++.+
T Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 7777766666655443 3556778889999999999999999999988763 4578888888899999999999998887
Q ss_pred Hhc
Q 010057 488 EKK 490 (519)
Q Consensus 488 ~~~ 490 (519)
++.
T Consensus 273 ~~~ 275 (280)
T PF13429_consen 273 QAL 275 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 664
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-11 Score=112.79 Aligned_cols=119 Identities=14% Similarity=0.163 Sum_probs=58.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHH
Q 010057 78 EAKRISSMKYVFELMQEKGINIDA-VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIV--SYTAYMKILFLNDRVKE 154 (519)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~~~~ 154 (519)
..|+++.|.+.+....+.. |+. ..+-....+..+.|+.+.|.+.+.+..+. .|+.. ..-.....+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 3455555555555544432 222 22223334445555555555555555443 22322 22223445555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010057 155 ATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG 201 (519)
Q Consensus 155 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 201 (519)
|...++.+.+.. +-+......+...+...|++++|.+++..+.+.+
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 555555555542 1134455555555555555555555555555554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-11 Score=113.59 Aligned_cols=292 Identities=13% Similarity=0.046 Sum_probs=191.2
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHH
Q 010057 112 SNAGDVDGAVNIWEEMKLKECYPTIV-SYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNC--YTYTVLMEYLVRAGKYE 188 (519)
Q Consensus 112 ~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~ 188 (519)
...|+++.|.+.+.+..+. .|+.. .+-....+..+.|+.+.|.+.+.+..+. .|+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 3679999999999887765 34433 3444566778889999999999998875 3454 34444688889999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCC
Q 010057 189 EALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQF 268 (519)
Q Consensus 189 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 268 (519)
.|...++.+.+.. +-+..++..+...+.+.|+++.|.+++..+.+.++..... +..+-..
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~-~~~l~~~------------------ 230 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEE-FADLEQK------------------ 230 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHH-HHHHHHH------------------
Confidence 9999999999874 2366688899999999999999999999999987542221 1111000
Q ss_pred CcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHH
Q 010057 269 SPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAF 348 (519)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 348 (519)
.+...+ ..+..+++.+.+
T Consensus 231 ----------------------------------------------------------a~~~~l----~~~~~~~~~~~L 248 (409)
T TIGR00540 231 ----------------------------------------------------------AEIGLL----DEAMADEGIDGL 248 (409)
T ss_pred ----------------------------------------------------------HHHHHH----HHHHHhcCHHHH
Confidence 000000 001111111122
Q ss_pred HHHHhCC---CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchh-HHHHHHH--HhcCCCcchHHHHhhhCC
Q 010057 349 EYSVKMD---LNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYL-GALLIHR--LGSARRPVPAAKIFSLLP 422 (519)
Q Consensus 349 ~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~--~~~~g~~~~A~~~~~~~~ 422 (519)
..+.+.. .+.+...+..+...+...|+.++|.++++...+.. |+... ...++.. ....++.+.+.+.++...
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 2221111 11244555566666666666666666666666543 22211 0011121 223355566677776655
Q ss_pred cCCC-Cc--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 423 EDQK-CT--ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 423 ~~~~-~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
+..| |+ ....++.+.|.+.|++++|.+.|+........||...+..+...+.+.|+.++|.+++++...
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5433 34 566789999999999999999999644444478988889999999999999999999987633
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-08 Score=94.39 Aligned_cols=463 Identities=9% Similarity=0.020 Sum_probs=341.0
Q ss_pred hhHHhhhccCChhHHHHHHHhC--CCCCCHHHHH--HHHh-cCCChHHHHHHHHHHh---hcCCCCCCHHHHHHHHHHHH
Q 010057 6 SNVYKILKYSTWDSAQDLLKNL--PIKWDSYTVN--QVLK-THPPMEKAWLFFNWVS---RSRGFNHDRFTYTTMLDIFG 77 (519)
Q Consensus 6 ~~i~~~~~~~~~~~a~~~~~~~--~~~p~~~~~~--~ll~-~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~li~~~~ 77 (519)
....++.+...++.|..++... .++-+..+|. +.|. +.|+.+....+.+.-. +..|+..+..-|-.=...|-
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 3455678888899999999987 3444455554 3343 3488888888776544 46788999999999899999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 010057 78 EAKRISSMKYVFELMQEKGINID--AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 155 (519)
..|..-....+......-|+.-. ..||+.-...|.+.+.++-|..+|....+. .+-+...|......=-..|..++.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence 99999888888888887776532 458888889999999999999999998776 233667788888777788999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
..+|++.... ++-....|....+.+-..|+...|..++....+.... +...|-+-+..-..+.+++.|..+|......
T Consensus 570 ~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 570 EALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 9999999886 4445667777778888889999999999998886433 6668889999999999999999999987764
Q ss_pred CCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHH
Q 010057 236 RLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSG 315 (519)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (519)
+. +...+..........+..++..+.+.. ....+.....++-.+-..+-..++++.|...+..
T Consensus 648 sg--TeRv~mKs~~~er~ld~~eeA~rllEe---------------~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 648 SG--TERVWMKSANLERYLDNVEEALRLLEE---------------ALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred CC--cchhhHHHhHHHHHhhhHHHHHHHHHH---------------HHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 43 333333333222222333322221100 0001111122333344456666777777766654
Q ss_pred HHhcCCCc-cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCcc
Q 010057 316 IMDKSIQL-DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLG 394 (519)
Q Consensus 316 ~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (519)
-.. .-| ....|-.+.+.--+.|.+-+|..+|+..+-.+ +-+...|...|+.-.+.|+.+.|..++...++. ++.+
T Consensus 711 G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~s 786 (913)
T KOG0495|consen 711 GTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSS 786 (913)
T ss_pred ccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCcc
Confidence 322 223 33345555555567789999999999988776 457778999999999999999999999999876 4677
Q ss_pred chhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 010057 395 VYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLE 474 (519)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~ 474 (519)
...|..-|....+.++-......+++... |+...-.+...+-...++++|.+.|.+..+.+ +.+..+|.-+..-+.
T Consensus 787 g~LWaEaI~le~~~~rkTks~DALkkce~---dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel 862 (913)
T KOG0495|consen 787 GLLWAEAIWLEPRPQRKTKSIDALKKCEH---DPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFEL 862 (913)
T ss_pred chhHHHHHHhccCcccchHHHHHHHhccC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHH
Confidence 77888888888888887777777766654 57777788888888899999999999999874 344678888888889
Q ss_pred hcCChhHHHHHHHHhcccCccc
Q 010057 475 KLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 475 ~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
+.|.-++-.+++.+....+|.+
T Consensus 863 ~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 863 RHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred HhCCHHHHHHHHHHHhccCCCC
Confidence 9999999999998888877753
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.2e-10 Score=106.98 Aligned_cols=327 Identities=13% Similarity=0.146 Sum_probs=224.7
Q ss_pred hcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010057 113 NAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALE 192 (519)
Q Consensus 113 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 192 (519)
..|+.++|.+++.+..+.. +.+...|.+|...|-..|+.+++...+--.-..+ +-|...|..+-....+.|+++.|.-
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 3388888888888887763 2366788888888888888888776654443332 3356777788888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCccc
Q 010057 193 IFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEF 272 (519)
Q Consensus 193 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 272 (519)
.|.+..+.. +++...+--=...|-+.|+...|..-|.++.+.....+...+...+.
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~----------------------- 284 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR----------------------- 284 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH-----------------------
Confidence 888887753 33444555556677788888888888888877665333333322221
Q ss_pred ccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHhccCChhhHHHHHHHH
Q 010057 273 ISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMD-KSIQLDSAVISTIIEVNCDHRRRDGALLAFEYS 351 (519)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 351 (519)
..+..+...++.+.|.+.+..... .+-..+...++.++..+.+...++.|.......
T Consensus 285 ----------------------~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~ 342 (895)
T KOG2076|consen 285 ----------------------RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDD 342 (895)
T ss_pred ----------------------HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence 233444455555656555555443 222334455666777777777777777777766
Q ss_pred HhCCC---------------------------CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC--CccchhHHHHH
Q 010057 352 VKMDL---------------------------NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH--SLGVYLGALLI 402 (519)
Q Consensus 352 ~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 402 (519)
..... .++... ..++-++.+....+....+.....+..+ .-+...+.-+.
T Consensus 343 ~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a 421 (895)
T KOG2076|consen 343 RNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLA 421 (895)
T ss_pred hccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHH
Confidence 65211 222222 1223344455555555556666666653 34667888899
Q ss_pred HHHhcCCCcchHHHHhhhCCcCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCCh
Q 010057 403 HRLGSARRPVPAAKIFSLLPEDQK--CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLAGLEKLGRV 479 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~ 479 (519)
++|...|++++|.++|..+...++ +...|-.+..+|...|.++.|++.|++.... .|+ ...-.+|...+.+.|+.
T Consensus 422 ~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~ 499 (895)
T KOG2076|consen 422 DALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNH 499 (895)
T ss_pred HHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCH
Confidence 999999999999999999988754 4668999999999999999999999999877 454 44556677788999999
Q ss_pred hHHHHHHHHhc
Q 010057 480 SDAEIYRKEKK 490 (519)
Q Consensus 480 ~~a~~~~~~~~ 490 (519)
++|.+.++.+.
T Consensus 500 EkalEtL~~~~ 510 (895)
T KOG2076|consen 500 EKALETLEQII 510 (895)
T ss_pred HHHHHHHhccc
Confidence 99999998876
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-10 Score=99.61 Aligned_cols=292 Identities=14% Similarity=0.131 Sum_probs=164.2
Q ss_pred cCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010057 114 AGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEI 193 (519)
Q Consensus 114 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 193 (519)
.|++..|++...+-.+.+-. ....|..-..+.-..|+.+.+-.++.+.-+.--.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666666666665555422 12333444445555666666666666666542234444555555666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccc
Q 010057 194 FSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFI 273 (519)
Q Consensus 194 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (519)
.+++.+.+.. +........++|.+.|++.....++..+.+.+...+...-..
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 6666655422 445566666677777777777777777766665433221100
Q ss_pred cchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHh
Q 010057 274 SDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVK 353 (519)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 353 (519)
...+|..+++-....+..+.-...++..-.
T Consensus 228 --------------------------------------------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr 257 (400)
T COG3071 228 --------------------------------------------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPR 257 (400)
T ss_pred --------------------------------------------------HHHHHHHHHHHHhccccchHHHHHHHhccH
Confidence 111222222222222223332333333222
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhC-CcCCCCchhHH
Q 010057 354 MDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLL-PEDQKCTATYT 432 (519)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~ 432 (519)
. .+-++..-.+++.-+.++|+.++|.++..+..+.+..++. +..-.+.+-++...-++..+.- ...+.++-.+.
T Consensus 258 ~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~ 332 (400)
T COG3071 258 K-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLS 332 (400)
T ss_pred H-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHH
Confidence 1 1233344445555566666666666666666665544441 1111223334433333333322 22233457788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 433 ALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 433 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
+|...|.+.+.|.+|.+.|+...+. .|+..+|+.+..++.+.|+..+|.+..++...
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 8888888888888888888877766 78888888888888888888888888887763
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-09 Score=94.93 Aligned_cols=431 Identities=10% Similarity=0.091 Sum_probs=293.0
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 123 (519)
++...|.++|+.+.... ..+...|--.+..=.++.....|..+|+.....=...| ..|-..+..=-..|++..|.++
T Consensus 87 ~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHH
Confidence 67778999999887332 66777888888888999999999999999987633223 2455555555677999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC
Q 010057 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA-GV 202 (519)
Q Consensus 124 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~ 202 (519)
|++-.+. .|+...|++.|+.=.+.+.++.|..+|+...- +.|+..+|......=.++|+...|..+|+...+. |-
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 9998765 89999999999999999999999999999886 4799999999999999999999999999988764 21
Q ss_pred -CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHh-hcCchhHHHhhhCCCCCcccccchhhhh
Q 010057 203 -QPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFK-VADENDSLLWQVHPQFSPEFISDNDAVE 280 (519)
Q Consensus 203 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (519)
..+...+.+...-=.++..++.|.-+|.-..+.-+......+-.....+. +.|+...+-..+. ...-..
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv---------~KRk~q 310 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV---------GKRKFQ 310 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh---------hhhhhH
Confidence 11223444444444466788999999988777655443333322232322 2222211111000 000001
Q ss_pred hHHhccCCC--CcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH--HHHH----HHHHH----HhccCChhhHHHHH
Q 010057 281 FVTTDIEGP--LSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDS--AVIS----TIIEV----NCDHRRRDGALLAF 348 (519)
Q Consensus 281 ~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~----~li~~----~~~~~~~~~a~~~~ 348 (519)
.-.....++ -..+...+......|+.+...++++..... +.|-. ..|. ..|+. -....+.+.+.++|
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 111111121 222334555666678888888888887653 33321 1111 11211 13446888888888
Q ss_pred HHHHhCCCCcCHHHHHHHHHHH----HhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC
Q 010057 349 EYSVKMDLNLERTAYLALIGIL----IKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED 424 (519)
Q Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 424 (519)
+...+ -++....||.-+=-.| .++.++..|.+++...+ |.-|...++...|..-.+.++++.+..++++..+.
T Consensus 390 q~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 390 QACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 88877 3444555655443333 46788888888888776 44588888888888888888999999999888776
Q ss_pred CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 425 QK-CTATYTALIGVYFSAGSADKALKIYKTMCRKG-IHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 425 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
.| |..+|......-...|+.+.|..+|+-.+.+. .......|...++-=...|.+++|..+++++.+..+
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 44 67888888888788899999999998887662 112234455555555678889999999998877644
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-10 Score=99.35 Aligned_cols=300 Identities=13% Similarity=0.119 Sum_probs=228.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 010057 79 AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDV 158 (519)
Q Consensus 79 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 158 (519)
.|+|..|+++...-.+.+-.| ...|..-..+.-..|+.+.+-..+.+..+..-.++...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 599999999999988887553 4456666778888999999999999998874456677788888899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 159 YKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 159 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
+.++.+.+ +-+.........+|.+.|++.....++..+.+.|+--|...-..=-.+| ..++++....+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~---------~glL~q~~~~~-- 243 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAW---------EGLLQQARDDN-- 243 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHH---------HHHHHHHhccc--
Confidence 99999875 3367788899999999999999999999999988765544322111222 11222221111
Q ss_pred cCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHh
Q 010057 239 LRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMD 318 (519)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (519)
+.+.....++...
T Consensus 244 ------------------------------------------------------------------~~~gL~~~W~~~p- 256 (400)
T COG3071 244 ------------------------------------------------------------------GSEGLKTWWKNQP- 256 (400)
T ss_pred ------------------------------------------------------------------cchHHHHHHHhcc-
Confidence 1111111222221
Q ss_pred cCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhH
Q 010057 319 KSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLG 398 (519)
Q Consensus 319 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 398 (519)
...+-++..-.+++.-+...|+.++|.++.++..+.+..|+ -...-.+.+.++...-.+..+...+.. +.++..+
T Consensus 257 r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~ 331 (400)
T COG3071 257 RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLL 331 (400)
T ss_pred HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHH
Confidence 12344566777888889999999999999999999887776 222334566788888877777776643 4566889
Q ss_pred HHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 010057 399 ALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSL 463 (519)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 463 (519)
.+|...|.+.+.+.+|...|+...+..|+..+|+.+..+|.+.|++.+|.+++++....-.+|+.
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999988888899999999999999999999999999998765555543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-11 Score=114.27 Aligned_cols=143 Identities=14% Similarity=0.114 Sum_probs=70.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 010057 81 RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKE--CYPTIVSYTAYMKILFLNDRVKEATDV 158 (519)
Q Consensus 81 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~ 158 (519)
+..+|...|..+..+-.. +..+...+-++|...+++++|.++|+..++.. ..-+...|.+.+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 445556666554443211 33444555566666666666666666665441 011445555555433221 11111
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 159 Y-KEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP-DKAACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 159 ~-~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
+ +++.+. -+-.+.+|-++.++|.-.++++.|++.|++..+ +.| ...+|+.+.+=+....++|.|...|+.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 1 222221 122455666666666666666666666666555 233 344555555555555555555555554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-10 Score=96.93 Aligned_cols=290 Identities=11% Similarity=0.115 Sum_probs=177.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHH
Q 010057 79 AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT---IVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 79 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~~~a 155 (519)
.++.++|.++|-+|.+.... +..+--+|-+.|-+.|..|+|+++.+.+.++---+. ....-.|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 35677777777777764221 344555666777777777777777777765511111 11233455556677777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDK----AACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
+++|..+.+.|. .-......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-|...+....+.+.|..++..
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 777777776532 23445666777777777777777777777665433322 1344455555555666666666665
Q ss_pred HHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHH
Q 010057 232 MKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDS 311 (519)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 311 (519)
..+.+.+-
T Consensus 206 Alqa~~~c------------------------------------------------------------------------ 213 (389)
T COG2956 206 ALQADKKC------------------------------------------------------------------------ 213 (389)
T ss_pred HHhhCccc------------------------------------------------------------------------
Confidence 55433221
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC
Q 010057 312 LLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH 391 (519)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (519)
...--.+.+.+...|+++.|.+.++...+++..--..+...|..+|...|+.++....+..+.+..
T Consensus 214 -------------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~- 279 (389)
T COG2956 214 -------------VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN- 279 (389)
T ss_pred -------------eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 111112233445677777788888777777655555667777788888888888888888877754
Q ss_pred CccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHh---cCCHHHHHHHHHHHHHC
Q 010057 392 SLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFS---AGSADKALKIYKTMCRK 457 (519)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 457 (519)
++...-..+.+.-......+.|...+.+-....|+...+..+|..... .|.+.+-+.+++.|...
T Consensus 280 -~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 -TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred -CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 333344444444444555666666665555556777777777777654 35566777777777654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-09 Score=94.88 Aligned_cols=197 Identities=9% Similarity=-0.008 Sum_probs=156.0
Q ss_pred chhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010057 292 IDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILI 371 (519)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (519)
...-+...|.-.++-++|...|++..+.+.. ....|+.+..-|...++...|++.|+.+.+.+ +.|...|-.+.++|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 3444566788889999999999988765432 45568888888999999999999999999766 557788999999999
Q ss_pred hcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHH
Q 010057 372 KLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKI 450 (519)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 450 (519)
-.+...-|+-.|++..+.. +.|..++.+|.++|.+.+++++|++.|.+.... +.+...+..|...|-+.++.++|...
T Consensus 410 im~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred HhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999875 678999999999999999999999999877654 34567899999999999999999999
Q ss_pred HHHHHHC----CCCCC--cccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 451 YKTMCRK----GIHPS--LGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 451 ~~~m~~~----g~~p~--~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
|++-.+. |..-+ .....-|..-+.+.+++++|..+......
T Consensus 489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 8876652 42222 12222234456888899988887765543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.3e-11 Score=103.24 Aligned_cols=417 Identities=12% Similarity=0.066 Sum_probs=263.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChhhHHHHHHHHHHCCCCCCh----hhHHHHH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT-SVMHWLSNAGDVDGAVNIWEEMKLKECYPTI----VSYTAYM 143 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li 143 (519)
...|..-|..+....+|...++-+.+...-|+..... .+-..+.+...+.+|++.|+-....-...+. ...+.+-
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 3444455666677889999999888877777765433 2345677888899999998876654111122 2344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------CCCHHHHHH
Q 010057 144 KILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGV------------QPDKAACNI 211 (519)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~------------~p~~~~~~~ 211 (519)
-.+.+.|+++.|..-|+...+. .|+..+-..|+-++..-|+.++..+.|..|...-. .|+....+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 5678899999999999998876 68988877777788889999999999999976422 233333332
Q ss_pred HHH-----HHHhcCChHHHHHHHH---HHHHcCCcc-------------------------------------CHHHHHH
Q 010057 212 LIE-----KCCKAGETRTIILILR---YMKENRLAL-------------------------------------RYPVFKE 246 (519)
Q Consensus 212 li~-----~~~~~g~~~~a~~~~~---~~~~~~~~~-------------------------------------~~~~~~~ 246 (519)
.|. -.-+... ..|++.+- .+...-+.| +..--..
T Consensus 362 ai~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHhhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 221 1111111 11111111 111111111 1111122
Q ss_pred HHHHHhhcCchhHH--HhhhCCCCCcc-cccchhhhhhHHhccCCCCcchhH--HHH---HHHhcCCHHHHHHHHHHHHh
Q 010057 247 ALQTFKVADENDSL--LWQVHPQFSPE-FISDNDAVEFVTTDIEGPLSIDQG--LVL---ILLKKKNLVAIDSLLSGIMD 318 (519)
Q Consensus 247 ~l~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--l~~---~~~~~~~~~~a~~~~~~~~~ 318 (519)
++.++.+....... ...+....... +....++......... ..-++. +.. .....|++++|.+.+.+...
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln--~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN--IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc--ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 22333222211110 00000000000 0011111111111111 111221 111 33456999999999999887
Q ss_pred cCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhH
Q 010057 319 KSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLG 398 (519)
Q Consensus 319 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 398 (519)
.+..-....|+.-+ .+-..|++++|++.|-++...- ..+...+..+...|....+...|.+++.+.... ++.|+.+.
T Consensus 519 ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 66555556666555 4567899999999998765321 235566777888888899999999988877654 46788899
Q ss_pred HHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH-Hhc
Q 010057 399 ALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGL-EKL 476 (519)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~-~~~ 476 (519)
+-|.+.|-+.|+-..|.+..-.--.- +.|..+..=|..-|....-+++|+.+|++.-- +.|+..-|..++..| .+.
T Consensus 596 skl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhc
Confidence 99999999999988888775443332 45677777788889999999999999998754 589999999998766 889
Q ss_pred CChhHHHHHHHHhcccCcc
Q 010057 477 GRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 477 g~~~~a~~~~~~~~~~~~~ 495 (519)
|.+++|..+++..-.-.|+
T Consensus 674 gnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred ccHHHHHHHHHHHHHhCcc
Confidence 9999999999887655554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.4e-11 Score=112.61 Aligned_cols=86 Identities=13% Similarity=0.053 Sum_probs=52.4
Q ss_pred CccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHH
Q 010057 322 QLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALL 401 (519)
Q Consensus 322 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 401 (519)
.|++.+|..++.+-..+|+.+.|..++.+|.+.|++.+..-|-.++.+ .++...+..+.+-|...|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 456666666666666666666666666666666666665555555433 55556666666666666666666666655
Q ss_pred HHHHhcCCC
Q 010057 402 IHRLGSARR 410 (519)
Q Consensus 402 ~~~~~~~g~ 410 (519)
+..+.+.|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 555554333
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-10 Score=95.02 Aligned_cols=288 Identities=14% Similarity=0.117 Sum_probs=208.5
Q ss_pred cCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCH
Q 010057 114 AGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNC------YTYTVLMEYLVRAGKY 187 (519)
Q Consensus 114 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~~~~~~ 187 (519)
+++.++|.+.|-+|.+.. +-+..+--+|-+.|-+.|..+.|+.+.+.+.+. ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 467888888888888752 113445567788888888899999888888874 442 2334567778888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCC
Q 010057 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQ 267 (519)
Q Consensus 188 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 267 (519)
|.|+++|..+.+.+. .-.....-|+..|-...+|++|++.-+++.+.+..+...-
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e------------------------ 178 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE------------------------ 178 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH------------------------
Confidence 888888888876432 2344667788888888888888888887777554321111
Q ss_pred CCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHH
Q 010057 268 FSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLA 347 (519)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 347 (519)
=...|..+...+....+.+.|..+
T Consensus 179 --------------------------------------------------------IAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 179 --------------------------------------------------------IAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHhhhhhHHHHHHH
Confidence 112344555556666788889999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC
Q 010057 348 FEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC 427 (519)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 427 (519)
+.+..+.+.+ ....=..+.+.....|++..|.+.++...+.+...-+.+...|..+|...|+.++....+..+.+..++
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 9888876522 222234566788899999999999999999886667788899999999999999999999998887676
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc---CChhHHHHHHHHh
Q 010057 428 TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKL---GRVSDAEIYRKEK 489 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~---g~~~~a~~~~~~~ 489 (519)
+..-..+-..-....-.+.|..++.+-... .|+...+.-++..-... |...+....++.|
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 777777766666666677788877777666 79998888888766332 3345555555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-11 Score=113.51 Aligned_cols=286 Identities=12% Similarity=0.058 Sum_probs=203.7
Q ss_pred ChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010057 116 DVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRG--LPPNCYTYTVLMEYLVRAGKYEEALEI 193 (519)
Q Consensus 116 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~~~~~~a~~~ 193 (519)
+..+|...|..+... +.-+.+....+..+|...+++++|+++|+.+.+.. ..-+..+|.+.+-.+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456788888885554 22234566678888999999999999999888741 112667788777654322 22222
Q ss_pred HH-HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCccc
Q 010057 194 FS-KMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEF 272 (519)
Q Consensus 194 ~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 272 (519)
+. .+.+. -+-.+.+|.++.++|.-+++.+.|++.|++..+.+..
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~---------------------------------- 453 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR---------------------------------- 453 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc----------------------------------
Confidence 22 22222 2335578999999999999999999998887764432
Q ss_pred ccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 010057 273 ISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSV 352 (519)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 352 (519)
...+|+.+..=+.....+|.|...|+..+
T Consensus 454 ---------------------------------------------------faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 454 ---------------------------------------------------FAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred ---------------------------------------------------cchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 22233333333455567888888888776
Q ss_pred hCCCCcCHHHH---HHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCc
Q 010057 353 KMDLNLERTAY---LALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCT 428 (519)
Q Consensus 353 ~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~ 428 (519)
. +++.+| -.+...|.+.++++.|+-.|+.+.+.+ +.+..+...+...+.+.|+.++|.++++++... +.|+
T Consensus 483 ~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 483 G----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred c----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 3 444454 456677889999999999999888876 456667777788888999999999999887665 3456
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccccc
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALS 498 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 498 (519)
..--..+..+...+++++|+..++++++. ++-+...+..+...|.+.|..+.|..-|--+.+++|.+..
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 66666677777889999999999999987 3334667777888999999999999999888888886543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-10 Score=110.00 Aligned_cols=125 Identities=14% Similarity=-0.090 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC----CCchhHHHHHHHHH
Q 010057 364 LALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ----KCTATYTALIGVYF 439 (519)
Q Consensus 364 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~li~~~~ 439 (519)
+.++..|++.-+..+++..-+.....-++ ..|..|++-+....+.++|..+.+++.... -|..-+..+.+.+.
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 44555555555555555444443333222 577888888888888888888888775531 24456788888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 440 SAGSADKALKIYKTMCRKGIHPS--LGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
+.+....+.+++++|.+.-..-+ ..++..+++.....|+.+.-.+..+-+..
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs 593 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVS 593 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHH
Confidence 88888999999998887522222 44566667777777877777666665444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.6e-10 Score=97.33 Aligned_cols=260 Identities=12% Similarity=0.059 Sum_probs=198.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc--cCHHHHHHHHHHHhhc
Q 010057 177 LMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA--LRYPVFKEALQTFKVA 254 (519)
Q Consensus 177 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 254 (519)
+..++-...+.+++..=.......|+.-+...-+-...+.-...|++.|+.+|+++.+.++- -+..+|..++-+-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34556666678888888888888777655554444455566678999999999999987543 1334444433222111
Q ss_pred CchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 010057 255 DENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEV 334 (519)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 334 (519)
.+.. -.|..+++ --+--+.|...+.+-
T Consensus 313 skLs------------------------------------------------~LA~~v~~-----idKyR~ETCCiIaNY 339 (559)
T KOG1155|consen 313 SKLS------------------------------------------------YLAQNVSN-----IDKYRPETCCIIANY 339 (559)
T ss_pred HHHH------------------------------------------------HHHHHHHH-----hccCCccceeeehhH
Confidence 1100 00111111 112234567778888
Q ss_pred HhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchH
Q 010057 335 NCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPA 414 (519)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 414 (519)
|.-.++.++|...|+..++.+ +-....|+.+..-|....+...|.+-++..++-. +.|-..|-.|..+|...+...-|
T Consensus 340 YSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHH
Confidence 888899999999999999876 3344569999999999999999999999999875 56888999999999999999999
Q ss_pred HHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhccc
Q 010057 415 AKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 415 ~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
.-.|++.... |.|+..|.+|..+|.+.++.++|++.|+.....| ..+...+..+...|.+.++.++|.+++++-.+.
T Consensus 418 LyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 418 LYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999998886 4578999999999999999999999999999987 336678999999999999999999999987663
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-13 Score=84.24 Aligned_cols=49 Identities=33% Similarity=0.671 Sum_probs=24.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010057 134 PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLV 182 (519)
Q Consensus 134 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 182 (519)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444444444444444444444444444444444444444444444443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.7e-13 Score=82.40 Aligned_cols=50 Identities=44% Similarity=0.832 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010057 169 PNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCK 218 (519)
Q Consensus 169 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 218 (519)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.2e-09 Score=90.11 Aligned_cols=207 Identities=10% Similarity=0.041 Sum_probs=132.2
Q ss_pred HhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH-----hccCChhhHHHHHHHHHhCCCC
Q 010057 283 TTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVN-----CDHRRRDGALLAFEYSVKMDLN 357 (519)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~~~~~~a~~~~~~~~~~~~~ 357 (519)
......-+...-.++..|.+.+++.+|..+.+++. ...|-......++.+. .......-|.+.|+..-+.+..
T Consensus 278 P~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~e 355 (557)
T KOG3785|consen 278 PSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALE 355 (557)
T ss_pred hHHHhhChHhhhhheeeecccccHHHHHHHHhhcC--CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccc
Confidence 33344444555578889999999999999988763 2334444433333322 1222344555666554444332
Q ss_pred cCHHH-HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHH-HH
Q 010057 358 LERTA-YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYT-AL 434 (519)
Q Consensus 358 ~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~-~l 434 (519)
-|... -.++...+.-..++++++-.++.+..-= ..|...--.+..+++..|+..+|+++|-.+.... .|..+|- .|
T Consensus 356 cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~L 434 (557)
T KOG3785|consen 356 CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSML 434 (557)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHH
Confidence 22211 3344455555667888887777776643 3333344457889999999999999998887653 5667774 46
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCccc-HHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 435 IGVYFSAGSADKALKIYKTMCRKGIHPSLGT-FNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 435 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.++|.++++++-|+.++-++-. +.+..+ +..+...|.+.+.+--|-+.|+.++.++|.
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 6789999999988877655432 223333 344456788999988888888888766653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.2e-08 Score=89.21 Aligned_cols=471 Identities=12% Similarity=0.125 Sum_probs=271.1
Q ss_pred hhHHhhhccCChhHHHHHHHhC----CCCCCHHHHH---HHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 010057 6 SNVYKILKYSTWDSAQDLLKNL----PIKWDSYTVN---QVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGE 78 (519)
Q Consensus 6 ~~i~~~~~~~~~~~a~~~~~~~----~~~p~~~~~~---~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 78 (519)
.-+..+..+|++...+..|++. ++.-...+|. ..+...+-++.++.++++.. +.++..-+..|..+++
T Consensus 107 ~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL-----k~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 107 DYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL-----KVAPEAREEYIEYLAK 181 (835)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH-----hcCHHHHHHHHHHHHh
Confidence 3344466677777777777765 4333334443 34445677778888888776 3444456777777788
Q ss_pred cCChhHHHHHHHHHHhC----------------------------------------CC--CCC--HHHHHHHHHHHHhc
Q 010057 79 AKRISSMKYVFELMQEK----------------------------------------GI--NID--AVTYTSVMHWLSNA 114 (519)
Q Consensus 79 ~~~~~~a~~~~~~m~~~----------------------------------------~~--~~~--~~~~~~li~~~~~~ 114 (519)
.+++++|.+.+...... |+ -+| ...|.+|..-|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 88888777666554321 00 111 13578888999999
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHCCC-----
Q 010057 115 GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLND----------------------RVKEATDVYKEMIQRGL----- 167 (519)
Q Consensus 115 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----------------------~~~~a~~~~~~m~~~g~----- 167 (519)
|.+++|.++|++.... ..++.-|+.+.++|+... +++-.+.-|+.+.+.+.
T Consensus 262 g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 9999999999887654 223444445555444321 12223333444433210
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 168 ------PPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP------DKAACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 168 ------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
+-+...|..-.. ...|+..+....|.+.... +.| -...|..+.+.|-..|+++.|..+|+...+.
T Consensus 340 VlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 112223322222 2346677788888887654 222 2246778888899999999999999887665
Q ss_pred CCccCHHHHHHHHHHHhhcC-------chhHHHhhhCC---CCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCC
Q 010057 236 RLALRYPVFKEALQTFKVAD-------ENDSLLWQVHP---QFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKN 305 (519)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (519)
... +...+-..+...+ +.+.....+.. .........-+...-.+.-...+..++...+...-..|-
T Consensus 417 ~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 417 PYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred Ccc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 443 2222222222111 11111111110 000000000000001111122334455566666677789
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCH-HHHHHHHHHHHhc---CCcchHHH
Q 010057 306 LVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLER-TAYLALIGILIKL---NTFPKVAE 381 (519)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~---~~~~~a~~ 381 (519)
++....+++.+.+..+.......|-.+ .+-.+.-++++.++|++-...=..|+. ..|+..+.-+.+. ..++.|..
T Consensus 493 festk~vYdriidLriaTPqii~NyAm-fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAM-FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 999999999999887765555444322 234555678888888765443223443 3366655555442 46889999
Q ss_pred HHHHHHhcCCCccchhHHHHHHH--HhcCCCcchHHHHhhhCCcCC-C--CchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 382 IVEEMTKAGHSLGVYLGALLIHR--LGSARRPVPAAKIFSLLPEDQ-K--CTATYTALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
+|++.++ |++|...-+-.|+-+ =-+.|-...|..++++....- + -...||..|.--+..=-.....++|++.++
T Consensus 572 LFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 572 LFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 9999999 777654433222222 234577888999999876642 1 245788877755544344456778888887
Q ss_pred CCCCCCcccHHHHHH---HHHhcCChhHHHHHHHHhcccCc
Q 010057 457 KGIHPSLGTFNVLLA---GLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 457 ~g~~p~~~t~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
. -||...-..-++ .=.+.|..+.|..++..-.++.+
T Consensus 651 ~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~d 689 (835)
T KOG2047|consen 651 S--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICD 689 (835)
T ss_pred h--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCC
Confidence 6 566655444433 23678888999888877766544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-09 Score=95.54 Aligned_cols=221 Identities=10% Similarity=0.041 Sum_probs=120.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHH
Q 010057 182 VRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLL 261 (519)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 261 (519)
.-.|+.-.|..-|+..++....++ ..|--+..+|....+.++..+.|....+.+..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~----------------------- 392 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE----------------------- 392 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-----------------------
Confidence 345677777777777776543322 22555666777778888888777776664432
Q ss_pred hhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhccCC
Q 010057 262 WQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQL-DSAVISTIIEVNCDHRR 340 (519)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~ 340 (519)
.+.++.+-...+.-.++++.|..-|+..... .| +...|-.+.-+..+.++
T Consensus 393 ---------------------------n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k 443 (606)
T KOG0547|consen 393 ---------------------------NPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHK 443 (606)
T ss_pred ---------------------------CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHH
Confidence 1223333333444445555555555554332 22 22223333333345556
Q ss_pred hhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC-------CccchhHHHHHHHHhcCCCcch
Q 010057 341 RDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH-------SLGVYLGALLIHRLGSARRPVP 413 (519)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~ 413 (519)
+++++..|++..+. ++--+..|+.....+...+++++|.+.|+..++..- .+.+.+.-+++-.- =.+++..
T Consensus 444 ~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~ 521 (606)
T KOG0547|consen 444 IAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQ 521 (606)
T ss_pred HHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHH
Confidence 66666666666543 344455566666666667777777777666664321 11122222222221 1256666
Q ss_pred HHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 414 AAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 414 A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
|.+++++..+..| .-..|.+|...-.+.|+.++|+++|++....
T Consensus 522 a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 522 AENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666655433 3456666666666666666666666665443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-07 Score=85.47 Aligned_cols=444 Identities=11% Similarity=0.091 Sum_probs=246.2
Q ss_pred HHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010057 37 NQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD 116 (519)
Q Consensus 37 ~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 116 (519)
..++-..|+.......|+...+...+.-....|...+......+-.+-+..++++..+- ++..-+--|..++..++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccc
Confidence 33333446666666667666655544444556777777777777777777777777664 44446666777777777
Q ss_pred hhhHHHHHHHHHHC------CCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcC
Q 010057 117 VDGAVNIWEEMKLK------ECYPTIVSYTAYMKILFLNDRVKE---ATDVYKEMIQRGLPPNCY--TYTVLMEYLVRAG 185 (519)
Q Consensus 117 ~~~a~~~~~~m~~~------~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~ 185 (519)
+++|.+.+...... .-+.+...|..+.+..+++-+.-. ...+++.+... -+|.. .|++|...|.+.|
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhh
Confidence 77777777666432 112345556666665555443322 23344444332 34443 5778888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCc------hhH
Q 010057 186 KYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADE------NDS 259 (519)
Q Consensus 186 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~ 259 (519)
.+++|..+|++.... ..+..-|+.+.++|++..+...+..+=-.-.+.+-.-+...+...+..+...-+ ++.
T Consensus 263 ~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsV 340 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSV 340 (835)
T ss_pred hhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 888888888877654 224444555555555432222111111000011111111111111111111000 000
Q ss_pred HHhh-------hCCCCCcccccchhhhhhHH-hc--------cCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 010057 260 LLWQ-------VHPQFSPEFISDNDAVEFVT-TD--------IEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQL 323 (519)
Q Consensus 260 ~~~~-------~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (519)
..++ -+..+.............++ .. .......+..+...|-..|+++.|..+|++..+-..+-
T Consensus 341 lLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred HHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 0000 00111111111111111111 11 11334456678888999999999999999876543322
Q ss_pred c---HHHHHHHHHHHhccCChhhHHHHHHHHHhCCCC----------c-------CHHHHHHHHHHHHhcCCcchHHHHH
Q 010057 324 D---SAVISTIIEVNCDHRRRDGALLAFEYSVKMDLN----------L-------ERTAYLALIGILIKLNTFPKVAEIV 383 (519)
Q Consensus 324 ~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~~~~~~a~~~~ 383 (519)
- ..+|......-.++.+++.|+++.+.....--. | +...|...++.--..|-++....+|
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1 334555555556667888888888766432111 1 1233556666666778899999999
Q ss_pred HHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC--CCCc-hhHHHHHHHHHh---cCCHHHHHHHHHHHHHC
Q 010057 384 EEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCT-ATYTALIGVYFS---AGSADKALKIYKTMCRK 457 (519)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 457 (519)
+.+++..+... .+.-...-.+-.+.-++++.+++++-... .|++ ..|++.+.-+.+ ..+.+.|..+|++..+
T Consensus 501 driidLriaTP-qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~- 578 (835)
T KOG2047|consen 501 DRIIDLRIATP-QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD- 578 (835)
T ss_pred HHHHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-
Confidence 99998775332 22222222344555688999999876664 3443 467777766654 3578999999999998
Q ss_pred CCCCCc-ccHHHHHHHH-HhcCChhHHHHHHHHhc
Q 010057 458 GIHPSL-GTFNVLLAGL-EKLGRVSDAEIYRKEKK 490 (519)
Q Consensus 458 g~~p~~-~t~~~l~~~~-~~~g~~~~a~~~~~~~~ 490 (519)
|.+|.. .|+-.+...+ .+.|....|..+++++-
T Consensus 579 ~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 579 GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 677753 3443443444 56788888899888753
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-09 Score=95.85 Aligned_cols=157 Identities=10% Similarity=0.012 Sum_probs=91.6
Q ss_pred HHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC-CccchhHHHHHHHHhcCCCcc
Q 010057 334 VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH-SLGVYLGALLIHRLGSARRPV 412 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 412 (519)
.+...|++++|.+.++...+.. +.+...+..+...+...|++++|.+.+....+... +.....+..+...+...|+++
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (234)
T TIGR02521 74 YYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD 152 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHH
Confidence 3333444444444444443332 12223344444444555555555555555544211 112233444555556666666
Q ss_pred hHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 413 PAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 413 ~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
+|.+.+++.....| +...+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 153 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 153 KAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66666665544333 3456777888888888999999888888776 344566677777788888888888888877655
Q ss_pred c
Q 010057 492 I 492 (519)
Q Consensus 492 ~ 492 (519)
.
T Consensus 232 ~ 232 (234)
T TIGR02521 232 L 232 (234)
T ss_pred h
Confidence 4
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.2e-10 Score=93.01 Aligned_cols=238 Identities=12% Similarity=0.052 Sum_probs=136.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHh
Q 010057 140 TAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAAC-NILIEKCCK 218 (519)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~ 218 (519)
+.+.++|.+.|.+.+|.+.|+.-+.. .|-+.||..|-+.|.+..+++.|+.+|.+-.+. .|-.+|| .-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 34555666666666666666655554 455556666666666666666666666655543 2333333 234445555
Q ss_pred cCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHH
Q 010057 219 AGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVL 298 (519)
Q Consensus 219 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 298 (519)
.++.++|.++++...+....
T Consensus 303 m~~~~~a~~lYk~vlk~~~~------------------------------------------------------------ 322 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI------------------------------------------------------------ 322 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc------------------------------------------------------------
Confidence 55555555555554442211
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcch
Q 010057 299 ILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPK 378 (519)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 378 (519)
+......+...|.-.++++-|+.+|+++...|+ -++..|+.+.-+|.-.+++|-
T Consensus 323 -------------------------nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 323 -------------------------NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred -------------------------cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhh
Confidence 222222333344555677777777777777774 355667766666666677776
Q ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010057 379 VAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKG 458 (519)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 458 (519)
++.-|......--.|+. | ...|-.+.......|+..-|.+.|+-....+
T Consensus 377 ~L~sf~RAlstat~~~~------------------a-------------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQ------------------A-------------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred hHHHHHHHHhhccCcch------------------h-------------hhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 66666665543322221 1 2345455555555677777777777666553
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccc
Q 010057 459 IHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSK 499 (519)
Q Consensus 459 ~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 499 (519)
.-....++.+.-.-.+.|++++|..++...++..|+...+
T Consensus 426 -~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 426 -AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred -cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 2235566666666677777777777777777777766555
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.5e-08 Score=88.25 Aligned_cols=461 Identities=11% Similarity=0.002 Sum_probs=267.7
Q ss_pred hhHHhhhccCChhHHHHHHHhC---CCCCCHHHH-HHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC
Q 010057 6 SNVYKILKYSTWDSAQDLLKNL---PIKWDSYTV-NQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKR 81 (519)
Q Consensus 6 ~~i~~~~~~~~~~~a~~~~~~~---~~~p~~~~~-~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 81 (519)
..+.-.+.+.++..|.-+-++. +..|+..-| ..++...+++++|..+...- .. ..-|..+.......+.+..+
T Consensus 21 ~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~l--e~~d~~cryL~~~~l~~lk~ 97 (611)
T KOG1173|consen 21 RLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTY-KL--EKRDIACRYLAAKCLVKLKE 97 (611)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHh-hh--hhhhHHHHHHHHHHHHHHHH
Confidence 3344455566777777777766 333433333 44454557888888776643 12 25677788888888889999
Q ss_pred hhHHHHHHHHHHhC--CC-----------CCCHHH----HHHHH-------HHHHhcCChhhHHHHHHHHHHCCCCCChh
Q 010057 82 ISSMKYVFELMQEK--GI-----------NIDAVT----YTSVM-------HWLSNAGDVDGAVNIWEEMKLKECYPTIV 137 (519)
Q Consensus 82 ~~~a~~~~~~m~~~--~~-----------~~~~~~----~~~li-------~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 137 (519)
++.|..++..-... ++ .+|..- -+.-. ..|......++|...|.+.... |..
T Consensus 98 ~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~ 173 (611)
T KOG1173|consen 98 WDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAK 173 (611)
T ss_pred HHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chh
Confidence 99999888732110 00 000000 00011 1222333455555555555443 333
Q ss_pred hHHHHHHHHHhcC-CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010057 138 SYTAYMKILFLND-RVKEATDVYKEMIQR-GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEK 215 (519)
Q Consensus 138 ~~~~li~~~~~~~-~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 215 (519)
.|..+...-...= ..++-+.+++.+.-. -..-+......+.....-...-+.....-.+-.-.+..-+......-.+-
T Consensus 174 c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~ 253 (611)
T KOG1173|consen 174 CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADR 253 (611)
T ss_pred hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHH
Confidence 3333322211110 011112222210000 00001111111111110000000000000001111233455555666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCC-ccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchh
Q 010057 216 CCKAGETRTIILILRYMKENRL-ALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQ 294 (519)
Q Consensus 216 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (519)
|...+++.+..++.+.+.+..+ .++.-.+..+ .+...++....... .+... .........|.
T Consensus 254 ~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia--~l~el~~~n~Lf~l--------------sh~LV-~~yP~~a~sW~ 316 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKDPFHLPCLPLHIA--CLYELGKSNKLFLL--------------SHKLV-DLYPSKALSWF 316 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH--HHHHhcccchHHHH--------------HHHHH-HhCCCCCcchh
Confidence 7777888888888887766543 2333222222 33333332222111 11111 12223344566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhC--CCCcCHHHHHHHHHHHHh
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM--DLNLERTAYLALIGILIK 372 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 372 (519)
.+...|...+...+|.+.|.+...-+.. =...|-.+..+|+-.|..|+|+..|..+.+. |. .-+..| +..-|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-hlP~LY--lgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-HLPSLY--LGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-cchHHH--HHHHHHH
Confidence 6777777789999999999986543322 1235667778888899999999999877664 31 112333 4446888
Q ss_pred cCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC----CCC----chhHHHHHHHHHhcCCH
Q 010057 373 LNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED----QKC----TATYTALIGVYFSAGSA 444 (519)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~----~~~~~~li~~~~~~g~~ 444 (519)
.++...|.++|.+..... +.|+.+.+.+.-.....+.+.+|..+|+..... .+. ..+++.|..+|.+.+++
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 999999999999998764 678888888877777888999999999865422 111 33578899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 445 DKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 445 ~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
++|+..+++.+... +-|..++.++.-.|...|.++.|.+.|.+..-+.|+.
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 99999999998873 6688999999999999999999999999998777764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-08 Score=89.68 Aligned_cols=157 Identities=11% Similarity=0.027 Sum_probs=134.9
Q ss_pred hccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHH
Q 010057 336 CDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAA 415 (519)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 415 (519)
.-.|+.-.|.+-|+...+....++. .|--+...|....+.++....|....+.+ +-++.+|..-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 4457888999999998887644433 27777778999999999999999999876 567788888888888889999999
Q ss_pred HHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 416 KIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 416 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
.=|++..+..| +...|-.+-.+..+.++++++...|++.+++ ++--+..|+....++...+++++|.+.|++.+++.|
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99999988755 5778888888888999999999999999987 455688999999999999999999999999999998
Q ss_pred c
Q 010057 495 D 495 (519)
Q Consensus 495 ~ 495 (519)
.
T Consensus 494 ~ 494 (606)
T KOG0547|consen 494 R 494 (606)
T ss_pred c
Confidence 7
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-09 Score=99.31 Aligned_cols=244 Identities=16% Similarity=0.101 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHH
Q 010057 171 CYTYTVLMEYLVRAGKYEEALEIFSKMQEA-----G-VQPDKA-ACNILIEKCCKAGETRTIILILRYMKENRLALRYPV 243 (519)
Q Consensus 171 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 243 (519)
..+...|...|...|++++|+.+++...+. | ..|... ..+.+...|...+++++|..+|+++..--.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e------ 272 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE------ 272 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH------
Confidence 346666888999999999999998887653 2 123333 233366677788888888888887655110
Q ss_pred HHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 010057 244 FKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQL 323 (519)
Q Consensus 244 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (519)
...-....-
T Consensus 273 -----------------------------------------------------------------------~~~G~~h~~ 281 (508)
T KOG1840|consen 273 -----------------------------------------------------------------------EVFGEDHPA 281 (508)
T ss_pred -----------------------------------------------------------------------HhcCCCCHH
Confidence 000000011
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhC-----CCC-cCHHH-HHHHHHHHHhcCCcchHHHHHHHHHhc---CCC-
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKM-----DLN-LERTA-YLALIGILIKLNTFPKVAEIVEEMTKA---GHS- 392 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~- 392 (519)
-..+++.|-.+|++.|++++|...++...+- +.. |.... ++.+...|...+++++|..+++...+. -+.
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 1223444445566666666666555544331 211 22222 666666777777777777777765531 111
Q ss_pred ---ccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-----C---C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 010057 393 ---LGVYLGALLIHRLGSARRPVPAAKIFSLLPED-----Q---K-CTATYTALIGVYFSAGSADKALKIYKTMCR---- 456 (519)
Q Consensus 393 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---- 456 (519)
.-..+++.|...|.+.|++++|+++++.+... . + ....++.|..+|.+.+++.+|.++|.+...
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 22456677777788888888888887755332 1 1 134667888888888888888888877432
Q ss_pred CCC-CCC-cccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 457 KGI-HPS-LGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 457 ~g~-~p~-~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
.|. .|+ ..+|..|...|...|++++|+++.+.+..
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 331 122 35677888888999999999888877653
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-07 Score=88.16 Aligned_cols=441 Identities=12% Similarity=0.093 Sum_probs=271.5
Q ss_pred hhHHhhhccCChhHHHHHHHhC----CCCCCHHHHHHHHh-cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 010057 6 SNVYKILKYSTWDSAQDLLKNL----PIKWDSYTVNQVLK-THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAK 80 (519)
Q Consensus 6 ~~i~~~~~~~~~~~a~~~~~~~----~~~p~~~~~~~ll~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 80 (519)
.++..+-..+++..-++..+.+ +-.+++...--+.- ..|+.++|.+..+...+. -..+.+.|+.+.-.+....
T Consensus 12 ~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 12 RRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhcc--CcccchhHHHHHHHHhhhh
Confidence 3444444556666655555544 55556555554443 449999999999887643 3667788999888888889
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010057 81 RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYK 160 (519)
Q Consensus 81 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (519)
++++|.+.|....+.+.. |..+|.-+--.-++.|+++.......++.+.. +-....|..+..++.-.|+...|..+++
T Consensus 90 ~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887543 67777777666677788888888888877662 1145678888888888999999999998
Q ss_pred HHHHCC-CCCCHHHHHHHHH------HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010057 161 EMIQRG-LPPNCYTYTVLME------YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMK 233 (519)
Q Consensus 161 ~m~~~g-~~p~~~~~~~li~------~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 233 (519)
+..+.. -.|+...|..... ...+.|..++|.+.+...... +.-....-.+-...+.+.+++++|..++..+.
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 888753 3566666654332 344566777777766555432 11111222334556777888888888888887
Q ss_pred HcCCccCHHHHHHHHHH-HhhcCchhHHH-------hhhCC----------CCCcccccchhhhhhHHhc-cCCCCcchh
Q 010057 234 ENRLALRYPVFKEALQT-FKVADENDSLL-------WQVHP----------QFSPEFISDNDAVEFVTTD-IEGPLSIDQ 294 (519)
Q Consensus 234 ~~~~~~~~~~~~~~l~~-~~~~~~~~~~~-------~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 294 (519)
...+ +...|...+.. +......-... ++..+ .+....-.......+.... ..+-+.+..
T Consensus 247 ~rnP--dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~ 324 (700)
T KOG1156|consen 247 ERNP--DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK 324 (700)
T ss_pred hhCc--hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh
Confidence 7553 33333322222 21111110000 00000 0000101112222232222 233344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH----hcC----------CCccHH--HHHHHHHHHhccCChhhHHHHHHHHHhCCCCc
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIM----DKS----------IQLDSA--VISTIIEVNCDHRRRDGALLAFEYSVKMDLNL 358 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~----~~~----------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (519)
.+...|-......-..++...+. ..+ -.|... ++--++..+-..|+++.|+.+++....+ .|
T Consensus 325 dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TP 402 (700)
T KOG1156|consen 325 DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TP 402 (700)
T ss_pred hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cc
Confidence 45444433322221122222211 111 133333 4456777888999999999999988754 45
Q ss_pred CHH-HHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCch--------
Q 010057 359 ERT-AYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTA-------- 429 (519)
Q Consensus 359 ~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------- 429 (519)
+.. .|..=.+.+...|+++.|..++.+..+.+ .+|..+-.--..-..+.++.++|.++.......+-+..
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqc 481 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQC 481 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhh
Confidence 543 36666788899999999999999998876 46666655666667788999999999888776543222
Q ss_pred hHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 010057 430 TYTAL--IGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 430 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~ 456 (519)
.|-.+ ..+|.+.|++..|++=|.....
T Consensus 482 mWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 482 MWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 33332 4568888888888876665543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-08 Score=99.49 Aligned_cols=146 Identities=9% Similarity=-0.014 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010057 82 ISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKE 161 (519)
Q Consensus 82 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (519)
+++|...++...+.... +...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45555555555554322 34445555555555555555555555555442 11234445555555555555555555555
Q ss_pred HHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 162 MIQRGLPPNC-YTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP-DKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 162 m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
..+. .|+. ..+..++..+...|++++|...+++..... .| +...+..+..++...|++++|...+..+
T Consensus 398 Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 398 CLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 5543 2221 122222333444455555555555544331 12 2223444444555555555555555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-08 Score=99.31 Aligned_cols=162 Identities=12% Similarity=0.033 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHH
Q 010057 325 SAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHR 404 (519)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 404 (519)
...+..+...+...|++++|+..+++..+.... +...+..++..+...|++++|...++.+.+...+.++..+..+..+
T Consensus 372 ~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~ 450 (553)
T PRK12370 372 ADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF 450 (553)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 345566667788889999999999998876533 2223333444566678899999998888765423345556677778
Q ss_pred HhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHhcCChhHH
Q 010057 405 LGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKALKIYKTMCRK-GIHPSLGTFNVLLAGLEKLGRVSDA 482 (519)
Q Consensus 405 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~l~~~~~~~g~~~~a 482 (519)
+...|+.++|...++++....|+ ....+.+...|...| ++|...++.+.+. .-.|....+ +-..+.-.|+.+.+
T Consensus 451 l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~ 526 (553)
T PRK12370 451 LSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAE 526 (553)
T ss_pred HHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHH
Confidence 88899999999999887665444 444566666777777 4788877777654 223333333 33445556777666
Q ss_pred HHHHHHhccc
Q 010057 483 EIYRKEKKSI 492 (519)
Q Consensus 483 ~~~~~~~~~~ 492 (519)
..+ +++.+-
T Consensus 527 ~~~-~~~~~~ 535 (553)
T PRK12370 527 KMW-NKFKNE 535 (553)
T ss_pred HHH-HHhhcc
Confidence 666 666554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-08 Score=87.89 Aligned_cols=187 Identities=13% Similarity=0.117 Sum_probs=147.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010057 43 HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122 (519)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 122 (519)
.|++++|.+.++...+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+...+...|++++|..
T Consensus 44 ~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~~~A~~ 120 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQGKYEQAMQ 120 (234)
T ss_pred CCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcccHHHHHH
Confidence 489999999998886432 445677888888899999999999999988876533 56678888888899999999999
Q ss_pred HHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010057 123 IWEEMKLKECYP-TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG 201 (519)
Q Consensus 123 ~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 201 (519)
.|++.......| ....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++....
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 198 (234)
T TIGR02521 121 QFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT- 198 (234)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 999987653222 34566777888889999999999999888753 235667888888899999999999999988776
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 202 VQPDKAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 202 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
.+.+...+..+...+...|+.+.|..+.+.+..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 199 YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344566777778888888999999888777654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.7e-07 Score=83.21 Aligned_cols=459 Identities=11% Similarity=0.055 Sum_probs=252.4
Q ss_pred chhhhhHHhhhccCChhHHHHHHHhC-CCCCCHH-H-HHHHHhc--CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010057 2 RDTISNVYKILKYSTWDSAQDLLKNL-PIKWDSY-T-VNQVLKT--HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIF 76 (519)
Q Consensus 2 ~~~~~~i~~~~~~~~~~~a~~~~~~~-~~~p~~~-~-~~~ll~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 76 (519)
++++..+..+..+|++++|.+...++ .+-||.. . ...++.. .+.+++|+.+.+.- .+...+..-+ +=.+|
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~~~~~~~~~--fEKAY 87 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKN---GALLVINSFF--FEKAY 87 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---chhhhcchhh--HHHHH
Confidence 35778888899999999999999988 4334432 2 2333332 27788888555432 1111111111 23344
Q ss_pred --HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHH-hcCCHH
Q 010057 77 --GEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF-LNDRVK 153 (519)
Q Consensus 77 --~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~~~~~ 153 (519)
.+.+..++|...++...+. +..+...-.+.+-+.|++++|..+|+.+.+.+. ..+..-+.+-+ ..+..-
T Consensus 88 c~Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~----dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNS----DDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHhh
Confidence 4678899999888733322 444666667788899999999999999977632 22222222111 000001
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHc-------C------CCCCHH-HHHHHHHHH
Q 010057 154 EATDVYKEMIQRGLPPNCYTYTVLME---YLVRAGKYEEALEIFSKMQEA-------G------VQPDKA-ACNILIEKC 216 (519)
Q Consensus 154 ~a~~~~~~m~~~g~~p~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~-------g------~~p~~~-~~~~li~~~ 216 (519)
.+. .+......| ..+|..+.+ .+...|++.+|+++++...+. + +.-... .-.-|...+
T Consensus 160 ~~~----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 160 QVQ----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred hHH----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 111 122222233 224444333 456789999999999887221 1 111111 112244456
Q ss_pred HhcCChHHHHHHHHHHHHcCCcc--CHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhc-cCCCCcch
Q 010057 217 CKAGETRTIILILRYMKENRLAL--RYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTD-IEGPLSID 293 (519)
Q Consensus 217 ~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 293 (519)
-..|+.++|..++....+....- ...+...-|.++.......+- ..+.. .......-...+.... ......+.
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~-~~l~~---k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDG-DLLKS---KKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCch-HHHHH---HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 67899999999999988876542 112222222222211111000 00000 0000000000000000 00111122
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcc--CChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010057 294 QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDH--RRRDGALLAFEYSVKMDLNLERTAYLALIGILI 371 (519)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (519)
...+......+..+.+.++...+. +.. ....+..++..+.+. ..+..+.+++...-+....-........+....
T Consensus 311 ~N~~lL~l~tnk~~q~r~~~a~lp--~~~-p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 311 RNNALLALFTNKMDQVRELSASLP--GMS-PESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhCC--ccC-chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 222222222233333333333221 122 234455555544332 246677777776665443333455667788889
Q ss_pred hcCCcchHHHHHH--------HHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC----CCC----chhHHHHH
Q 010057 372 KLNTFPKVAEIVE--------EMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED----QKC----TATYTALI 435 (519)
Q Consensus 372 ~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~----~~~~~~li 435 (519)
..|+++.|.+++. .+.+.+. .+.+..+++..+.+.++.+.|..++...... .+. ..++..+.
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 9999999999999 5555544 4445667788888888877777777654321 111 23455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 010057 436 GVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEK 489 (519)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~ 489 (519)
..-.+.|+-++|..+++++.+.. ++|..+...++.+|++. +.+.|+.+-+++
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 56677899999999999999864 78899999999999885 577888877554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.1e-09 Score=89.87 Aligned_cols=131 Identities=12% Similarity=0.027 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYT-VLMEYL 181 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~ 181 (519)
--+.+-.+|.+.|.+.+|...|+.-.+. .|-..||..|-++|.+..++..|+.+|.+-++. .|-.+||. -+.+.+
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHH
Confidence 3467889999999999999999998876 567889999999999999999999999998875 56556654 567788
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 182 VRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
-..++.++|.++|+...+.. ..++....++...|.-.++++.|+.+++.+.+.|+.
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~ 356 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ 356 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC
Confidence 88999999999999998863 335667777778888899999999999999998865
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-08 Score=95.14 Aligned_cols=242 Identities=15% Similarity=0.182 Sum_probs=170.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-C
Q 010057 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQR-----GL-PPNCYT-YTVLMEYLVRAGKYEEALEIFSKMQEA-----G-V 202 (519)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~ 202 (519)
..+...+...|...|+++.|+.+++...+. |. .|...+ .+.+...|...+++++|..+|+++... | .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666889999999999999999887653 21 233332 334677889999999999999998642 2 2
Q ss_pred CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhh
Q 010057 203 QPDK-AACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEF 281 (519)
Q Consensus 203 ~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (519)
.|.. .+++.|..+|.+.|++++|...++...+
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------------------------- 311 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------------------------- 311 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-----------------------------------------------
Confidence 2322 3777788899999999999999887654
Q ss_pred HHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHhccCChhhHHHHHHHHHhC---CCC
Q 010057 282 VTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLD-SAVISTIIEVNCDHRRRDGALLAFEYSVKM---DLN 357 (519)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~ 357 (519)
++.... ....|. ...++.+...++..+++++|..+++...+. -+.
T Consensus 312 ------------------------------I~~~~~-~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 312 ------------------------------IYEKLL-GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred ------------------------------HHHHhh-ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 111100 000111 122455566677778888888888766543 122
Q ss_pred cC----HHHHHHHHHHHHhcCCcchHHHHHHHHHhc----CCC---ccchhHHHHHHHHhcCCCcchHHHHhhhCCc---
Q 010057 358 LE----RTAYLALIGILIKLNTFPKVAEIVEEMTKA----GHS---LGVYLGALLIHRLGSARRPVPAAKIFSLLPE--- 423 (519)
Q Consensus 358 ~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 423 (519)
++ ..+++.+...|...|++++|+++++.++.. +.. -....++.+...|.+.++..+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 345899999999999999999999998742 111 1244567778889999999999999875432
Q ss_pred -CCCC----chhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010057 424 -DQKC----TATYTALIGVYFSAGSADKALKIYKTMC 455 (519)
Q Consensus 424 -~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 455 (519)
-+|+ ..+|..|...|.+.|++++|+++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1333 4688999999999999999999988775
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-07 Score=86.87 Aligned_cols=152 Identities=13% Similarity=0.191 Sum_probs=84.7
Q ss_pred HHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhc-
Q 010057 37 NQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTY-TSVMHWLSNA- 114 (519)
Q Consensus 37 ~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~- 114 (519)
+.++...|++++|++.++.-. ..+.............+.+.|+.++|..+|..+.+.+ |+...| ..+..+....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 466666788888888887642 3334445556777777788888888888888888874 444444 4444444222
Q ss_pred ----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010057 115 ----GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRV-KEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEE 189 (519)
Q Consensus 115 ----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 189 (519)
.+.+...++++++... -|...+...+.-.+.....+ ..+...+..+...|+++ +|+.|-..|......+-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence 2456667777777655 23333333332222221222 23445556666666553 45555555554444444
Q ss_pred HHHHHHHH
Q 010057 190 ALEIFSKM 197 (519)
Q Consensus 190 a~~~~~~m 197 (519)
..+++...
T Consensus 162 i~~l~~~~ 169 (517)
T PF12569_consen 162 IESLVEEY 169 (517)
T ss_pred HHHHHHHH
Confidence 44444443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-06 Score=76.34 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=87.9
Q ss_pred HHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHH-HHH-hcCCCc
Q 010057 334 VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLI-HRL-GSARRP 411 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~ 411 (519)
.+...+++++|.-.|+...... +-+..+|..++.+|...|.+.+|.-.-+...+. ++.+..+.+.+. ..+ -....-
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 3444566666666666665433 234556667777777667666665555544432 122332222221 111 111223
Q ss_pred chHHHHhhhCCcCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhc
Q 010057 412 VPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKK 490 (519)
Q Consensus 412 ~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~ 490 (519)
++|.++++......|+ ....+.+...+...|..++++.++++-... .||....+.+...+.....+++|...|....
T Consensus 421 EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 421 EKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5566666655554444 334455556666666777777777666554 5666666666666666666777766666666
Q ss_pred ccCcc
Q 010057 491 SIQAD 495 (519)
Q Consensus 491 ~~~~~ 495 (519)
.++|.
T Consensus 499 r~dP~ 503 (564)
T KOG1174|consen 499 RQDPK 503 (564)
T ss_pred hcCcc
Confidence 66553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-06 Score=81.11 Aligned_cols=400 Identities=12% Similarity=0.081 Sum_probs=238.8
Q ss_pred HHHHHhcC--CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010057 36 VNQVLKTH--PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN 113 (519)
Q Consensus 36 ~~~ll~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 113 (519)
|-.++..+ +++...+.+.+.+.+ +++--..+.....-.+...|+.++|......-.+..+. +.+.|+.+.-.+-.
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 44445544 677777777777764 33444555555555566678888888888877776555 67788888777777
Q ss_pred cCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 010057 114 AGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPP-NCYTYTVLMEYLVRAGKYEEALE 192 (519)
Q Consensus 114 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~ 192 (519)
..++++|+..|......+. -|...|.-+--.-++.++++.....-.++.+. .| ....|..+..++.-.|+...|..
T Consensus 88 dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999988877642 26677777766777778888877777777764 33 44567777778888888888888
Q ss_pred HHHHHHHcC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhC
Q 010057 193 IFSKMQEAG-VQPDKAACNILI------EKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVH 265 (519)
Q Consensus 193 ~~~~m~~~g-~~p~~~~~~~li------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 265 (519)
++++..+.. -.|+...|.-.. ....+.|.++.|.+.+..-...-+.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D--------------------------- 217 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD--------------------------- 217 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH---------------------------
Confidence 888887653 345655554332 2344556666666665543321100
Q ss_pred CCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH-HhccCChhhH
Q 010057 266 PQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEV-NCDHRRRDGA 344 (519)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a 344 (519)
...+...-...+.+.+++++|..++..+... .||..-|...... +.+-.+.-++
T Consensus 218 -----------------------kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~ 272 (700)
T KOG1156|consen 218 -----------------------KLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEA 272 (700)
T ss_pred -----------------------HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHH
Confidence 0011222344677888999999999888765 4666666654443 3333333344
Q ss_pred H-HHHHHHHhCC---CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcch----HHH
Q 010057 345 L-LAFEYSVKMD---LNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVP----AAK 416 (519)
Q Consensus 345 ~-~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~ 416 (519)
+ .+|....+.- -.|-....+.+ ....-.+..-+++..+.+.|+++-. ..+...|-.-...+- +..
T Consensus 273 lk~ly~~ls~~y~r~e~p~Rlplsvl----~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~~le~Lvt~ 345 (700)
T KOG1156|consen 273 LKALYAILSEKYPRHECPRRLPLSVL----NGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVAFLEKLVTS 345 (700)
T ss_pred HHHHHHHHhhcCcccccchhccHHHh----CcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhHHHHHHHHH
Confidence 4 5555554431 11111111111 1112223344555566666654322 222222211111110 111
Q ss_pred HhhhCC------------cCCCCchhHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhH
Q 010057 417 IFSLLP------------EDQKCTATYT--ALIGVYFSAGSADKALKIYKTMCRKGIHPSL-GTFNVLLAGLEKLGRVSD 481 (519)
Q Consensus 417 ~~~~~~------------~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~g~~~~ 481 (519)
+...+. ..+|....|. -++..|-+.|+++.|..+++..+.+ .|+. ..|..=.+.+.+.|+.++
T Consensus 346 y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~e 423 (700)
T KOG1156|consen 346 YQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDE 423 (700)
T ss_pred HHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHH
Confidence 111111 1245444454 4667778889999999999888866 6653 334444578888899999
Q ss_pred HHHHHHHhcccCccccccccc
Q 010057 482 AEIYRKEKKSIQADALSKDAV 502 (519)
Q Consensus 482 a~~~~~~~~~~~~~~~~~~~~ 502 (519)
|..++++..+++..+...|..
T Consensus 424 Aa~~l~ea~elD~aDR~INsK 444 (700)
T KOG1156|consen 424 AAAWLDEAQELDTADRAINSK 444 (700)
T ss_pred HHHHHHHHHhccchhHHHHHH
Confidence 999999888887665555433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-07 Score=88.96 Aligned_cols=421 Identities=14% Similarity=0.077 Sum_probs=258.9
Q ss_pred hhhhHHhhhccCChhHHHHHHHhC-CCCCCHHHHHHHHh----cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH-
Q 010057 4 TISNVYKILKYSTWDSAQDLLKNL-PIKWDSYTVNQVLK----THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFG- 77 (519)
Q Consensus 4 ~~~~i~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~ll~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~- 77 (519)
++-.+..+...|++++|++.++.. ..-+|...+..... ..|+.++|..+|+.+... .|+...|-..+..+.
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHh
Confidence 456667788899999999999987 55567777665544 449999999999999754 565555544444443
Q ss_pred hc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 010057 78 EA-----KRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDV-DGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR 151 (519)
Q Consensus 78 ~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 151 (519)
.. .+.+...++++.+.+.- |.......+.-.+..-..+ ..+...+..+...|++ .+|+.|-..|....+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence 22 25677888999887763 3333332222222221122 3455566666777754 466667677776666
Q ss_pred HHHHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 010057 152 VKEATDVYKEMIQR----G----------LPPNCY--TYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPD-KAACNILIE 214 (519)
Q Consensus 152 ~~~a~~~~~~m~~~----g----------~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~ 214 (519)
.+-..+++...... + -+|+.. ++.-+...|-..|++++|+++++..+++ .|+ +..|..-.+
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 66666666665432 1 134443 4566788899999999999999999986 566 558888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchh
Q 010057 215 KCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQ 294 (519)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (519)
.+-..|++.+|.+.++.....+.. +..+.+
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~--------------------------------------------------DRyiNs 266 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA--------------------------------------------------DRYINS 266 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh--------------------------------------------------hHHHHH
Confidence 999999999999999988875543 222445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccH--------HHHHHHHHHHhccCChhhHHHHHHHHHhC-----CCCcCH-
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIMDKSIQLDS--------AVISTIIEVNCDHRRRDGALLAFEYSVKM-----DLNLER- 360 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~- 360 (519)
..+..+.+.|++++|..++......+..|.. ........+|.+.|++..|++.|....+. .-+.|-
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH 346 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFH 346 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 5677888999999999999998877754432 23456677889999999999888776553 112222
Q ss_pred ---------HHHHHHHHHHHhcCC-------cchHHHHHHHHHhcCCCcc---c---------hhHHHHHHHH---hcCC
Q 010057 361 ---------TAYLALIGILIKLNT-------FPKVAEIVEEMTKAGHSLG---V---------YLGALLIHRL---GSAR 409 (519)
Q Consensus 361 ---------~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~---~---------~~~~~l~~~~---~~~g 409 (519)
.+|..+++..-+... ...|.+++-.+.+...... . .--..+..-- .+..
T Consensus 347 ~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~ 426 (517)
T PF12569_consen 347 SYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKA 426 (517)
T ss_pred HHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHH
Confidence 333333333222211 1234555555543321100 0 0000000000 0011
Q ss_pred CcchHHHHhhh-----------CCc---CCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 010057 410 RPVPAAKIFSL-----------LPE---DQKCTATYTALIGVYFSA-GSADKALKIYKTMCRKGIHPSLGTFNVLLAGLE 474 (519)
Q Consensus 410 ~~~~A~~~~~~-----------~~~---~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~ 474 (519)
.-+++...-.. ... .+.|... ...-+.+. .=.++|.++++-+.+.+ +-+..||......|.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp---~GekL~~t~dPLe~A~kfl~pL~~~a-~~~~et~~laFeVy~ 502 (517)
T PF12569_consen 427 KKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP---LGEKLLKTEDPLEEAMKFLKPLLELA-PDNIETHLLAFEVYL 502 (517)
T ss_pred hHHHHHHHHhhhhhhhhccccccccccCCcCCCCc---cHHHHhcCCcHHHHHHHHHHHHHHhC-ccchhhHHHHhHHHH
Confidence 11111111000 000 0112211 12223333 35677889888888885 456789999999999
Q ss_pred hcCChhHHHHHHHH
Q 010057 475 KLGRVSDAEIYRKE 488 (519)
Q Consensus 475 ~~g~~~~a~~~~~~ 488 (519)
+.|++-.|.+.+.+
T Consensus 503 Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 503 RKGKYLLALQALKK 516 (517)
T ss_pred hcCcHHHHHHHHHh
Confidence 99999888887754
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-06 Score=80.43 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010057 100 DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179 (519)
Q Consensus 100 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 179 (519)
+.........-+...+++.+..++++...+. .++....+..-|.++...|+..+-..+=.+|.+. .+-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 4445555556666777888888888877765 2446666666677777777777777666777765 3335667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 180 YLVRAGKYEEALEIFSKMQEAGVQPD-KAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
.|.-.|..++|.+.|...... .|. ...|-.....|+-.|..++|+..+...-+
T Consensus 321 YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar 374 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR 374 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHH
Confidence 777778888888888776543 222 23677777778777888877777665433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-06 Score=74.10 Aligned_cols=190 Identities=15% Similarity=0.083 Sum_probs=100.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcc
Q 010057 299 ILLKKKNLVAIDSLLSGIMDK-SIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFP 377 (519)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (519)
.+.+.++.+.|.+.+..|..+ ....|++|...+.-. -..+++.+..+-+.-+...+. -...||..++-.||+..-++
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHh
Confidence 456678888888888887654 234466665544322 223556666666666666653 45678999999999998888
Q ss_pred hHHHHHHHHHhcCC-CccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCC---HHHHHHHHH
Q 010057 378 KVAEIVEEMTKAGH-SLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGS---ADKALKIYK 452 (519)
Q Consensus 378 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~---~~~A~~~~~ 452 (519)
.|..++.+-...-+ -.+.+.|+.|=.........++|.+-++.+.+.-. ......+=+.--...++ ...|++-++
T Consensus 328 lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd 407 (459)
T KOG4340|consen 328 LAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYD 407 (459)
T ss_pred HHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 88877766433222 13444554332223334456666655544432100 00000011111111111 112223333
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 453 TMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 453 ~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
+..+.- ....-+-...|++..++..+++.|+..-+...
T Consensus 408 ~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 408 ETLEKY----LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HHHHHH----HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 333221 11222334556788889999999987665444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-06 Score=78.38 Aligned_cols=151 Identities=15% Similarity=0.050 Sum_probs=87.9
Q ss_pred CChHHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHD--RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 121 (519)
+..+.++.-+.++.......|+ ...|..+...+...|+.++|...|+...+.... +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 3445566666555533323332 234566666666777777777777777665432 4667777777777777777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 122 NIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 122 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
..|++..+.... +..+|..+..++...|++++|.+.|+...+. .|+..........+...++.++|...|....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 777776655211 3456666666666777777777777776664 3332211222222334556777777775544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-05 Score=74.57 Aligned_cols=130 Identities=16% Similarity=0.084 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhc
Q 010057 363 YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSA 441 (519)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~ 441 (519)
|......+.+.++.++|...+.+..+.. +..+..|......+...|...+|.+.|.......|+ +.+-.++..++.+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 5556666777777777766666665543 345556666666677778888888888766655454 55677888888888
Q ss_pred CCHHHHHH--HHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 442 GSADKALK--IYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 442 g~~~~A~~--~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
|+..-|.. ++..+.+.+ +-+...|-.+...+.+.|+.+.|.+.|....++++
T Consensus 732 G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 87777777 888888775 55677888888888888888888888887777755
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.3e-06 Score=70.19 Aligned_cols=112 Identities=9% Similarity=0.039 Sum_probs=67.2
Q ss_pred HHhhhccCChhHHHHHHHhC-CC-CCCHHHHHHHHhcC----CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC
Q 010057 8 VYKILKYSTWDSAQDLLKNL-PI-KWDSYTVNQVLKTH----PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKR 81 (519)
Q Consensus 8 i~~~~~~~~~~~a~~~~~~~-~~-~p~~~~~~~ll~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 81 (519)
+..++.+.++..|+.+++-- .. +-.......-|..| |++++|...|..+..+. .|+...+..|.-.+--.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHH
Confidence 45677888999999998854 11 11222334444443 99999999999886544 6666666666655556688
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010057 82 ISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEE 126 (519)
Q Consensus 82 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 126 (519)
+.+|..+-....+. +-.-..|+....+.|+-++-..+...
T Consensus 107 Y~eA~~~~~ka~k~-----pL~~RLlfhlahklndEk~~~~fh~~ 146 (557)
T KOG3785|consen 107 YIEAKSIAEKAPKT-----PLCIRLLFHLAHKLNDEKRILTFHSS 146 (557)
T ss_pred HHHHHHHHhhCCCC-----hHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 88888776544432 22233333444444554444444333
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-06 Score=70.65 Aligned_cols=189 Identities=15% Similarity=0.057 Sum_probs=150.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 147 (519)
+...|.-.|.+.|+...|..-+++..+.... +..+|..+...|.+.|+.+.|.+.|+........ +..+.|..-..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 4556677888999999999999999987433 5668888889999999999999999998876322 5677888888889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010057 148 LNDRVKEATDVYKEMIQRGLPP-NCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTII 226 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 226 (519)
..|++++|.+.|++....-.-| -..+|..+.-+..+.|+.+.|...|++-.+.... ...+...+.+...+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 9999999999999988753222 2457888888888999999999999998876322 3346778888888999999999
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHH
Q 010057 227 LILRYMKENRLALRYPVFKEALQTFKVADENDSL 260 (519)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 260 (519)
.+++.....+. ++...+...++.-...++.+..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHH
Confidence 99998888777 7777777777777777766544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.5e-07 Score=81.41 Aligned_cols=229 Identities=12% Similarity=-0.058 Sum_probs=148.3
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010057 148 LNDRVKEATDVYKEMIQRG-LPPN--CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRT 224 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 224 (519)
..+..+.+..-+.+++... ..|+ ...|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|+++.
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3466677888888877532 2222 3457777778888888888888888887753 2256688888888888888888
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcC
Q 010057 225 IILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKK 304 (519)
Q Consensus 225 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (519)
|...|+...+....
T Consensus 117 A~~~~~~Al~l~P~------------------------------------------------------------------ 130 (296)
T PRK11189 117 AYEAFDSVLELDPT------------------------------------------------------------------ 130 (296)
T ss_pred HHHHHHHHHHhCCC------------------------------------------------------------------
Confidence 88888876653221
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHH
Q 010057 305 NLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVE 384 (519)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 384 (519)
+...+..+..++...|++++|++.|+...+.. |+..........+...++.++|...+.
T Consensus 131 -------------------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 131 -------------------YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred -------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 34456677777888899999999999988764 332222222223445678899999987
Q ss_pred HHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCC---cCC-----CCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 385 EMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLP---EDQ-----KCTATYTALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
...... .++... ..+.. ...|+..++ +.++.+. +.. .....|..+...+.+.|++++|+..|++..+
T Consensus 190 ~~~~~~-~~~~~~-~~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 190 QRYEKL-DKEQWG-WNIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHhhC-CccccH-HHHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 655432 233222 22222 234555444 2333322 111 1245788889999999999999999999887
Q ss_pred CCCCCCcccHHHHH
Q 010057 457 KGIHPSLGTFNVLL 470 (519)
Q Consensus 457 ~g~~p~~~t~~~l~ 470 (519)
.+ +||.+-+...+
T Consensus 265 ~~-~~~~~e~~~~~ 277 (296)
T PRK11189 265 NN-VYNFVEHRYAL 277 (296)
T ss_pred hC-CchHHHHHHHH
Confidence 75 44555444433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.9e-05 Score=71.91 Aligned_cols=420 Identities=12% Similarity=0.080 Sum_probs=231.9
Q ss_pred HHhhhccCChhHHHHHHHhCCC--CCCHHHHHHHH--hcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChh
Q 010057 8 VYKILKYSTWDSAQDLLKNLPI--KWDSYTVNQVL--KTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRIS 83 (519)
Q Consensus 8 i~~~~~~~~~~~a~~~~~~~~~--~p~~~~~~~ll--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 83 (519)
+..+++.+++++|+.+.+.-+. .-+.+.|.-.- ...+..++|+..++-.. +.+..+...-...|.+.|+++
T Consensus 53 vValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~yd 127 (652)
T KOG2376|consen 53 VVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYD 127 (652)
T ss_pred HhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHH
Confidence 4557888999999988886532 22222233332 23389999999888432 334556777778889999999
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHH---HHHHhcCCHHHHHHHH
Q 010057 84 SMKYVFELMQEKGINI-DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYM---KILFLNDRVKEATDVY 159 (519)
Q Consensus 84 ~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li---~~~~~~~~~~~a~~~~ 159 (519)
++.++|..+.+.+..- +...-..++.+-.. -.+. .+......| ..+|..+- ..+...|++.+|++++
T Consensus 128 ealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL 198 (652)
T KOG2376|consen 128 EALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELL 198 (652)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999999998875431 11122222222111 1111 222222233 33444433 3567899999999999
Q ss_pred HHHHHC-------C------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCC
Q 010057 160 KEMIQR-------G------LPPNCY-TYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAAC----NILIEKCCKAGE 221 (519)
Q Consensus 160 ~~m~~~-------g------~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~ 221 (519)
+..... + +.-+.. .-..|.-.+...|+-++|.+++..++... .+|.... |.|+..-....-
T Consensus 199 ~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~ 277 (652)
T KOG2376|consen 199 EKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNY 277 (652)
T ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhcccccc
Confidence 988321 1 111111 12234456778899999999999998764 3444322 222222111111
Q ss_pred hH-HHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhcc-CCCCcchhHHHHH
Q 010057 222 TR-TIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDI-EGPLSIDQGLVLI 299 (519)
Q Consensus 222 ~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~ 299 (519)
++ .++..++........ .... .+. ..+...+.+... .........++......... ..+..+...++..
T Consensus 278 ~d~~~l~~k~~~~~~l~~---~~l~----~Ls-~~qk~~i~~N~~-lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~ 348 (652)
T KOG2376|consen 278 FDGDLLKSKKSQVFKLAE---FLLS----KLS-KKQKQAIYRNNA-LLALFTNKMDQVRELSASLPGMSPESLFPILLQE 348 (652)
T ss_pred CchHHHHHHHHHHHHhHH---HHHH----HHH-HHHHHHHHHHHH-HHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHH
Confidence 22 122222221111000 0000 000 000000000000 00000000011111111111 1222333334432
Q ss_pred HH--hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHH--------HHHhCCCCcCHHHHHHHHHH
Q 010057 300 LL--KKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFE--------YSVKMDLNLERTAYLALIGI 369 (519)
Q Consensus 300 ~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~ 369 (519)
.. +.....++..++....+....-...+.-..++.....|+++.|++++. .+.+.+..| .+...+...
T Consensus 349 ~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l 426 (652)
T KOG2376|consen 349 ATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVAL 426 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHH
Confidence 22 223466777777777665544445667777888899999999999999 444444444 556667778
Q ss_pred HHhcCCcchHHHHHHHHHhc--CCCccch----hHHHHHHHHhcCCCcchHHHHhhhCCc-CCCCchhHHHHHHHHHhcC
Q 010057 370 LIKLNTFPKVAEIVEEMTKA--GHSLGVY----LGALLIHRLGSARRPVPAAKIFSLLPE-DQKCTATYTALIGVYFSAG 442 (519)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~li~~~~~~g 442 (519)
+.+.++-+.|..++....+. .-.+... ++.-+...-.+.|+.++|..+++++.+ .++|..+...++.+|++.
T Consensus 427 ~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~- 505 (652)
T KOG2376|consen 427 YYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL- 505 (652)
T ss_pred HHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-
Confidence 88888888888888887642 1112222 233334444567999999999999988 577888999999999988
Q ss_pred CHHHHHHHHHHH
Q 010057 443 SADKALKIYKTM 454 (519)
Q Consensus 443 ~~~~A~~~~~~m 454 (519)
+++.|..+-+.+
T Consensus 506 d~eka~~l~k~L 517 (652)
T KOG2376|consen 506 DPEKAESLSKKL 517 (652)
T ss_pred CHHHHHHHhhcC
Confidence 778888876654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.9e-07 Score=72.83 Aligned_cols=199 Identities=11% Similarity=-0.033 Sum_probs=165.3
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 010057 294 QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKL 373 (519)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (519)
-.+...|...|+...|..-+++..+.+.. ...++..+...|.+.|..+.|.+.|+...... +-+-...|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 35677999999999999999998876532 55678888888999999999999999998765 33455677777778999
Q ss_pred CCcchHHHHHHHHHhcCCCc-cchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHH
Q 010057 374 NTFPKVAEIVEEMTKAGHSL-GVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIY 451 (519)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 451 (519)
|++++|.+.|+.......-+ -..++..+.-+..+.|+++.|.+.|++..+..| .+.+.-.+.......|++-.|..++
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 99999999999998764433 445777788888899999999999998877654 4677888999999999999999999
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 452 KTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 452 ~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
+.....+. ++..++...+..-.+.|+.+.+.++=..+....|.
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99888774 89999999999999999999999988888666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-05 Score=73.24 Aligned_cols=162 Identities=13% Similarity=0.025 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGI-NIDA-VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
.|..+...+...++.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. +.|...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 344455555555666665555554443211 1121 122222334456677777777777766552 123333332 112
Q ss_pred HH----hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 010057 146 LF----LNDRVKEATDVYKEMIQRGLPPN-CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAG 220 (519)
Q Consensus 146 ~~----~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 220 (519)
+. ..+....+.+.+.. ..+..|+ ......+...+...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 22 23444444444443 1112233 3344455566677777777777777777643 223456666777777777
Q ss_pred ChHHHHHHHHHHHH
Q 010057 221 ETRTIILILRYMKE 234 (519)
Q Consensus 221 ~~~~a~~~~~~~~~ 234 (519)
++++|...++....
T Consensus 163 ~~~eA~~~l~~~l~ 176 (355)
T cd05804 163 RFKEGIAFMESWRD 176 (355)
T ss_pred CHHHHHHHHHhhhh
Confidence 77777777776544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-05 Score=70.14 Aligned_cols=134 Identities=13% Similarity=0.130 Sum_probs=72.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010057 97 INIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYT 175 (519)
Q Consensus 97 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 175 (519)
++-|+.....+...+...|+.++|+..|++.... .|+ ........-.+.+.|+.+....+...+.... .-+...|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 3345566667777777777777777777766544 222 2222222333456666666666666665431 12233333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 176 VLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 176 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
.-....-...+++.|+.+-+..++.. +.+...|-.=..++...++++.|.-.|+....
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 33334445566677776666665532 11333444444556666777777766665544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.3e-05 Score=71.20 Aligned_cols=358 Identities=11% Similarity=0.006 Sum_probs=220.8
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010057 125 EEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP 204 (519)
Q Consensus 125 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 204 (519)
.++....+.-|...|..+--+....|+++.+-+.|++.... .--....|+.+-..|...|.-..|..+++.-....-.|
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 33444445557778888888888899999999999887754 33366788888889999999889999888776543224
Q ss_pred -CHHHHHHHHHHHHhc-CChHHHHHHHHHHHHc------CCccCHHHHHHHHHHH-hhcCchhHHHhhhCCCCCcccccc
Q 010057 205 -DKAACNILIEKCCKA-GETRTIILILRYMKEN------RLALRYPVFKEALQTF-KVADENDSLLWQVHPQFSPEFISD 275 (519)
Q Consensus 205 -~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 275 (519)
|...+...-+.|.+. +..++++.+..+.... .+.|....+..+--.+ ......+..- ....
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR----------~~~h 460 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSER----------DALH 460 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHH----------HHHH
Confidence 333444444444433 6666666666555541 1122211111111111 1111111000 0001
Q ss_pred hhhhhhHH---hccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 010057 276 NDAVEFVT---TDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSV 352 (519)
Q Consensus 276 ~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 352 (519)
......++ .....++.+...+...|...+++..|.....+....+-.-+...|..+.-.+...+++.+|+.+.+...
T Consensus 461 ~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 11111121 122344455566777888999999999999998888777788888888888888899999999888765
Q ss_pred hC-CC------------------CcCHHHHHHHHHHHHh---------c--------------CCcchHHHHHHHH----
Q 010057 353 KM-DL------------------NLERTAYLALIGILIK---------L--------------NTFPKVAEIVEEM---- 386 (519)
Q Consensus 353 ~~-~~------------------~~~~~~~~~l~~~~~~---------~--------------~~~~~a~~~~~~~---- 386 (519)
+. |. .-...|...++..+-. . .+..++....+.+
T Consensus 541 ~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 541 EEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred HHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 43 21 0001122222222220 0 1112222222211
Q ss_pred ----HhcC---------CCcc--------chhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCH
Q 010057 387 ----TKAG---------HSLG--------VYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSA 444 (519)
Q Consensus 387 ----~~~~---------~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~ 444 (519)
...| ..|. ...+......+.+.+..++|...+.+..... -.+..|......+...|++
T Consensus 621 a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 621 ASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred HhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhh
Confidence 1111 1222 2244556777888999999987777766543 3466788888889999999
Q ss_pred HHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHH--HHHHhcccCcc
Q 010057 445 DKALKIYKTMCRKGIHPS-LGTFNVLLAGLEKLGRVSDAEI--YRKEKKSIQAD 495 (519)
Q Consensus 445 ~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~ 495 (519)
.+|.+.|...... .|+ .....++...+.+.|+..-|.. ++..+.+++|.
T Consensus 701 ~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 701 EEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred HHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 9999999988876 555 5678888899999999888888 99988888775
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.1e-08 Score=85.15 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=116.4
Q ss_pred HHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHh----
Q 010057 331 IIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLG---- 406 (519)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 406 (519)
....+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.+ +..+...+..++.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLAT 178 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHh
Confidence 334567788999998888642 456777788899999999999999999998753 2334444544433
Q ss_pred cCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh-hHHHH
Q 010057 407 SARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRV-SDAEI 484 (519)
Q Consensus 407 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~-~~a~~ 484 (519)
-.+.+.+|..+|+++.+. ++++.+.+.+..++...|++++|.+++++..+.+ +-|+.|+..++.+....|+. +.+.+
T Consensus 179 g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 334699999999998876 5678888999999999999999999999987764 44677888888888888888 66888
Q ss_pred HHHHhcccCcc
Q 010057 485 YRKEKKSIQAD 495 (519)
Q Consensus 485 ~~~~~~~~~~~ 495 (519)
++.+++...|+
T Consensus 258 ~l~qL~~~~p~ 268 (290)
T PF04733_consen 258 YLSQLKQSNPN 268 (290)
T ss_dssp HHHHCHHHTTT
T ss_pred HHHHHHHhCCC
Confidence 99988877664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-05 Score=82.83 Aligned_cols=378 Identities=10% Similarity=-0.039 Sum_probs=201.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINID-AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 147 (519)
+......+...|++.++...+...... +. ..............|+.+.+...++.+.......+..........+.
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 444455566677777666544332211 00 01112222344456777777776666532111112222333444555
Q ss_pred hcCCHHHHHHHHHHHHHC--CC----CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 010057 148 LNDRVKEATDVYKEMIQR--GL----PPNC--YTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDK----AACNILIEK 215 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~--g~----~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~ 215 (519)
..|+++++...+.+.... .. .+.. .....+...+...|++++|...+++....-...+. ...+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 677888888777766542 00 1111 11222334455678888888888776653111111 234555566
Q ss_pred HHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhH
Q 010057 216 CCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQG 295 (519)
Q Consensus 216 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (519)
+...|+++.|...+++............. .. .....
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~-~~-------------------------------------------~~~~~ 536 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHY-AL-------------------------------------------WSLLQ 536 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHH-HH-------------------------------------------HHHHH
Confidence 67778888888887776652111000000 00 01122
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc----CCC--c-cHHHHHHHHHHHhccCChhhHHHHHHHHHhC--CCCc--CHHHHH
Q 010057 296 LVLILLKKKNLVAIDSLLSGIMDK----SIQ--L-DSAVISTIIEVNCDHRRRDGALLAFEYSVKM--DLNL--ERTAYL 364 (519)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~ 364 (519)
+...+...|++..|...+.+.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 344556677777777766654321 111 1 1223334445566678888888888776543 1112 123344
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCcc-chhH-----HHHHHHHhcCCCcchHHHHhhhCCcCCC-Cch----hHHH
Q 010057 365 ALIGILIKLNTFPKVAEIVEEMTKAGHSLG-VYLG-----ALLIHRLGSARRPVPAAKIFSLLPEDQK-CTA----TYTA 433 (519)
Q Consensus 365 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~ 433 (519)
.+...+...|+.+.|.+.+.......-... ...+ ...+..+...|+.+.|.+.+.......+ ... .+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 456667778888888888877754211110 0000 1122334557788888888766544211 111 1345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHhcccC
Q 010057 434 LIGVYFSAGSADKALKIYKTMCRK----GIHPS-LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQ 493 (519)
Q Consensus 434 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 493 (519)
+..++...|++++|..++++.... |..++ ..++..+..++.+.|+.++|...+++..++.
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 666777888888888888877653 32222 2345556677788888888888888877654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.4e-09 Score=58.00 Aligned_cols=31 Identities=35% Similarity=0.711 Sum_probs=13.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010057 167 LPPNCYTYTVLMEYLVRAGKYEEALEIFSKM 197 (519)
Q Consensus 167 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 197 (519)
+.||..||++||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-05 Score=71.90 Aligned_cols=302 Identities=11% Similarity=-0.030 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010057 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKEC-YPTI-VSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179 (519)
Q Consensus 102 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 179 (519)
..|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++..+.. +.|...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3555666666677778887776666554421 1222 112222334567889999999998888752 223334442 22
Q ss_pred HHHH----cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhc
Q 010057 180 YLVR----AGKYEEALEIFSKMQEAGVQPDK-AACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVA 254 (519)
Q Consensus 180 ~~~~----~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 254 (519)
.+.. .+..+.+.+.+.. .....|+. .....+...+...|++++|...++...+....
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~---------------- 146 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD---------------- 146 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------------
Confidence 2222 3444455554443 11223333 34445666778888899888888887764422
Q ss_pred CchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 010057 255 DENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEV 334 (519)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 334 (519)
+...+..+...
T Consensus 147 ---------------------------------------------------------------------~~~~~~~la~i 157 (355)
T cd05804 147 ---------------------------------------------------------------------DAWAVHAVAHV 157 (355)
T ss_pred ---------------------------------------------------------------------CcHHHHHHHHH
Confidence 12233444445
Q ss_pred HhccCChhhHHHHHHHHHhCCC-CcCH--HHHHHHHHHHHhcCCcchHHHHHHHHHhcCC-CccchhH-H--HHHHHHhc
Q 010057 335 NCDHRRRDGALLAFEYSVKMDL-NLER--TAYLALIGILIKLNTFPKVAEIVEEMTKAGH-SLGVYLG-A--LLIHRLGS 407 (519)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~ 407 (519)
+...|++++|...++....... .|+. ..|..+...+...|++++|..+++....... .+..... + .++..+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 5556666666666665554321 1221 1234455566666666666666666543221 1111110 1 22333333
Q ss_pred CCCcchHHHH---hhhCCcCCCC-chhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------CC-cccHHHHHHHH
Q 010057 408 ARRPVPAAKI---FSLLPEDQKC-TATY--TALIGVYFSAGSADKALKIYKTMCRKGIH-------PS-LGTFNVLLAGL 473 (519)
Q Consensus 408 ~g~~~~A~~~---~~~~~~~~~~-~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------p~-~~t~~~l~~~~ 473 (519)
.|....+.+. ........+. ...+ .....++...|+.++|.++++.+...... +. ........-++
T Consensus 238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 3433333222 1111111011 1122 34666777888899999999888764322 11 11122222345
Q ss_pred HhcCChhHHHHHHHHhccc
Q 010057 474 EKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 474 ~~~g~~~~a~~~~~~~~~~ 492 (519)
...|++++|.+.+.....+
T Consensus 318 ~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 318 FAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7889999998888876654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.5e-09 Score=57.75 Aligned_cols=32 Identities=31% Similarity=0.608 Sum_probs=17.0
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 131 ECYPTIVSYTAYMKILFLNDRVKEATDVYKEM 162 (519)
Q Consensus 131 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 162 (519)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00017 Score=69.68 Aligned_cols=409 Identities=14% Similarity=0.117 Sum_probs=206.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010057 43 HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122 (519)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 122 (519)
.|-+++|..+|++-.+ |..|=+.|-..|.|++|.++-+.--+-.+ ..||..-..-+-..+|.+.|++
T Consensus 813 LgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHH
Confidence 3666666666665421 33444555556667766666544332211 2355555555555666666666
Q ss_pred HHHHHHHCCC---------C----------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010057 123 IWEEMKLKEC---------Y----------PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183 (519)
Q Consensus 123 ~~~~m~~~~~---------~----------p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 183 (519)
.|++...... + .|...|.-...-+-..|+.+.|+.+|...++ |-.+++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 6654311100 0 0111111111112234444444444443332 2333444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhh
Q 010057 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQ 263 (519)
Q Consensus 184 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 263 (519)
.|+.++|-++-++ .-|....-.|.+.|-..|++.+|..+|..... +..+|+.+...+-.|.+...
T Consensus 951 qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 951 QGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred ccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHH
Confidence 4555555444332 12556666788888888999999888876543 55666666554443333221
Q ss_pred hCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHH--------HHhc--CCCccHHHHHHHHH
Q 010057 264 VHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSG--------IMDK--SIQLDSAVISTIIE 333 (519)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~--~~~~~~~~~~~li~ 333 (519)
.... .. ........+++....-....+..|-+.|.+.+|.++--+ +... ....|+...+-...
T Consensus 1016 al~s-~~------~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1016 ALMS-GG------SDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred Hhhc-Cc------hhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 1111 00 000111122233333445566778888888888765422 1222 33446667777777
Q ss_pred HHhccCChhhHHHHHHHHHh----------CCC----------------CcCHH----HHHHHHHHHHhcCCcchHHHHH
Q 010057 334 VNCDHRRRDGALLAFEYSVK----------MDL----------------NLERT----AYLALIGILIKLNTFPKVAEIV 383 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~----------~~~----------------~~~~~----~~~~l~~~~~~~~~~~~a~~~~ 383 (519)
.++.+.++++|..++-..++ .|+ .|+.. ....+...|.++|.+..|-+-|
T Consensus 1089 FF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 77777777777776654322 121 23322 3666777888888877665444
Q ss_pred HH----------HHhcC-----------------------------CCccchhHHHHHHHHhcCCC--------------
Q 010057 384 EE----------MTKAG-----------------------------HSLGVYLGALLIHRLGSARR-------------- 410 (519)
Q Consensus 384 ~~----------~~~~~-----------------------------~~~~~~~~~~l~~~~~~~g~-------------- 410 (519)
.+ +++.| ...++.+...++..|.+..-
T Consensus 1169 TQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi 1248 (1416)
T KOG3617|consen 1169 TQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI 1248 (1416)
T ss_pred hhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh
Confidence 33 22333 11334444444444444322
Q ss_pred --------------cchHHHHhhhCCcCCCCchhHHHHHHHHHh-----------cCCHHHHHHHHHHHHHCCCCCCc--
Q 010057 411 --------------PVPAAKIFSLLPEDQKCTATYTALIGVYFS-----------AGSADKALKIYKTMCRKGIHPSL-- 463 (519)
Q Consensus 411 --------------~~~A~~~~~~~~~~~~~~~~~~~li~~~~~-----------~g~~~~A~~~~~~m~~~g~~p~~-- 463 (519)
+++|.+.+.++..+......++.|-.-.+. ..+..+.++-...|.+.-.-||+
T Consensus 1249 Eiee~q~ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir 1328 (1416)
T KOG3617|consen 1249 EIEELQTYDKAMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIR 1328 (1416)
T ss_pred hHHHHhhhhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcch
Confidence 223333333333221112222222211111 12444444444555555333433
Q ss_pred --ccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 464 --GTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 464 --~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
..|..++..+....+|+.|-+.++++....|.
T Consensus 1329 ~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~ 1362 (1416)
T KOG3617|consen 1329 CTRLFALLIEDHVSRKNYKPAYRALTELQKKVPN 1362 (1416)
T ss_pred hHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCc
Confidence 46788889999999999999999999877665
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.1e-07 Score=79.28 Aligned_cols=146 Identities=14% Similarity=0.077 Sum_probs=63.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010057 78 EAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATD 157 (519)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 157 (519)
-.|++..+..-.+ ........+.....-+.+++...|+.+.++ .++.... .|.......+...+...++-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 3455555554443 222211112333444556666666555333 2322222 4444444444433333334444444
Q ss_pred HHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 158 VYKEMIQRGLPPNCYTY-TVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 158 ~~~~m~~~g~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
-+++....+..++..++ ......+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44433333222222222 22223444456666666665432 2445555566666666666666666666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.0002 Score=65.87 Aligned_cols=424 Identities=11% Similarity=0.190 Sum_probs=218.6
Q ss_pred CCCHHHHHHHHhcC--CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 010057 30 KWDSYTVNQVLKTH--PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSV 107 (519)
Q Consensus 30 ~p~~~~~~~ll~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 107 (519)
+-|..+|+.+|..+ ...+++.+.+++++. .++-....|..-|+.-...++++.++.+|.+-...- .+...|..-
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 45789999999866 578999999999974 346677889999999999999999999999987763 367777777
Q ss_pred HHHHHh-cCChhhH----HHHHHHH-HHCCCCCC-hhhHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCCC--
Q 010057 108 MHWLSN-AGDVDGA----VNIWEEM-KLKECYPT-IVSYTAYMKI---------LFLNDRVKEATDVYKEMIQRGLPP-- 169 (519)
Q Consensus 108 i~~~~~-~g~~~~a----~~~~~~m-~~~~~~p~-~~~~~~li~~---------~~~~~~~~~a~~~~~~m~~~g~~p-- 169 (519)
++---+ .|+...+ .+.|+-. .+.|+.+- ...|+..+.- |..+.+++...++|+++....+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 764443 3343332 2233332 33354433 3345555542 445567777888888887642110
Q ss_pred ----CHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHH--HHHHHHH--
Q 010057 170 ----NCYTYTVLMEYL-------VRAGKYEEALEIFSKMQEA--GVQPDKAACNILIEKCCKAGETRTI--ILILRYM-- 232 (519)
Q Consensus 170 ----~~~~~~~li~~~-------~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a--~~~~~~~-- 232 (519)
|-..|..=|+-. -+...+..|.++++++... |+.....+ .-..|-.++. .+++...
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHHH
Confidence 111111111111 1223455666666665432 32211111 0000001110 0111000
Q ss_pred --HHcCCccCH---------HHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHH
Q 010057 233 --KENRLALRY---------PVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILL 301 (519)
Q Consensus 233 --~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (519)
+..++.... ..+...+..+.-.+ +++.. ...+.. ..-..+.
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~p---eiWy~------------------~s~yl~-------~~s~l~~ 297 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHP---EIWYD------------------YSMYLI-------EISDLLT 297 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCH---HHHHH------------------HHHHHH-------HhhHHHH
Confidence 011111000 00111111111000 00000 000000 0000122
Q ss_pred hcCCH-------HHHHHHHHHHHhcCCCccHHHHHHHHHHHhcc---CChhhHHHHHHHHHhC-CCCcCHHHHHHHHHHH
Q 010057 302 KKKNL-------VAIDSLLSGIMDKSIQLDSAVISTIIEVNCDH---RRRDGALLAFEYSVKM-DLNLERTAYLALIGIL 370 (519)
Q Consensus 302 ~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 370 (519)
..|+. +++..+++.....-..-+..+|..+...--.. +..+..-+.+.++... ...|+ .+|...++..
T Consensus 298 ~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~i 376 (656)
T KOG1914|consen 298 EKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFI 376 (656)
T ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHH
Confidence 22222 23333333332222222333333333211111 1244444555555443 22332 3466777777
Q ss_pred HhcCCcchHHHHHHHHHhcCCCc-cchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHH
Q 010057 371 IKLNTFPKVAEIVEEMTKAGHSL-GVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKAL 448 (519)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 448 (519)
.+..-+..|..+|..+.+.+..+ ++++.++++.-|| .++..-|.++|+.-... +.++.--...+..+...++-..|.
T Consensus 377 rR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R 455 (656)
T KOG1914|consen 377 RRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNAR 455 (656)
T ss_pred HHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHH
Confidence 77777777888888887766555 6667777777665 35667777777754433 233344456666667777777777
Q ss_pred HHHHHHHHCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 449 KIYKTMCRKGIHPS--LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 449 ~~~~~m~~~g~~p~--~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
.+|++....++.|| ...|..++.-=..-|+...+.++-++.-..-|
T Consensus 456 ~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 456 ALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 78888777766555 35677777666777777777777766655544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=8e-05 Score=71.76 Aligned_cols=183 Identities=17% Similarity=0.161 Sum_probs=117.6
Q ss_pred CHHHHHHHHhcC-----CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-C--------C
Q 010057 32 DSYTVNQVLKTH-----PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEK-G--------I 97 (519)
Q Consensus 32 ~~~~~~~ll~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~--------~ 97 (519)
|..|-.++|.-. |+.+.|.+-.+.+ .+...|..+.+.|.+..+++-|.-.+..|... | -
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 677777777642 9999998777665 23567999999999999999888777776542 1 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010057 98 NIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVL 177 (519)
Q Consensus 98 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 177 (519)
.|+ .+-..+.-.....|.+++|..+|.+-++. ..|=..|-..|.+++|+++-+.=..- . =..||..-
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHH
Confidence 121 22333334456778899999999887654 44556677789999998886543321 1 22455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc-------------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 178 MEYLVRAGKYEEALEIFSKMQEA-------------------GVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 178 i~~~~~~~~~~~a~~~~~~m~~~-------------------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
...+-..++.+.|++.|+.-... .-..|...|.....-.-..|+.+.|+.+|...+.
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 66666677788877777643110 0122445555555555566777777777765544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00022 Score=70.42 Aligned_cols=187 Identities=13% Similarity=0.170 Sum_probs=133.2
Q ss_pred hccCChhHHHHHHHhCCCCCCHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010057 12 LKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFEL 91 (519)
Q Consensus 12 ~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 91 (519)
...+-+++|..+|+... .+....+.++...+..++|.++-++.- .+..|+.+..+-.+.|...+|.+-|
T Consensus 1059 i~~~LyEEAF~ifkkf~--~n~~A~~VLie~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieSy-- 1127 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD--MNVSAIQVLIENIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIESY-- 1127 (1666)
T ss_pred hhhhHHHHHHHHHHHhc--ccHHHHHHHHHHhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHHH--
Confidence 44566778888888764 356677777777788888888776552 2456888888888888888887766
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 010057 92 MQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNC 171 (519)
Q Consensus 92 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 171 (519)
.+. -|+..|..+++...+.|.+++-.+.+.-.++..-.|.. =+.||-+|++.+++.+.++++ .-||.
T Consensus 1128 -ika---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~ 1194 (1666)
T KOG0985|consen 1128 -IKA---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGPNV 1194 (1666)
T ss_pred -Hhc---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCCCc
Confidence 222 26778888888888888888888877766665444433 357788888888887766554 24677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 172 YTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 172 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
.....+.+-|...+.++.|.-+|..+. -|.-|...+...|++..|.+.-++
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777777888888888888877776443 366666677777777777665443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00011 Score=70.05 Aligned_cols=167 Identities=17% Similarity=0.154 Sum_probs=109.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCc
Q 010057 297 VLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTF 376 (519)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (519)
+......+.+.+|..+++.+.++.. -..-|..+...|+..|+++.|.++|-+. ..++-.|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3455566778888888887766543 3445778888999999999999988643 2356678889999999
Q ss_pred chHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 377 PKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
..|.++-.+.. |.......|-+-..-+-+.|++.+|++++-.+.. |+ ..|..|-+.|..+..+++.++-.
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~--p~-----~aiqmydk~~~~ddmirlv~k~h- 877 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE--PD-----KAIQMYDKHGLDDDMIRLVEKHH- 877 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC--ch-----HHHHHHHhhCcchHHHHHHHHhC-
Confidence 98877765553 3233445555555567888999999988877655 32 35677778888887777766421
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 010057 457 KGIHPSLGTFNVLLAGLEKLGRVSDAEIYR 486 (519)
Q Consensus 457 ~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~ 486 (519)
| ..-..|...+..-+...|+.+.|+.-|
T Consensus 878 -~-d~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 878 -G-DHLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred -h-hhhhHHHHHHHHHHHhccChhHHHHHH
Confidence 1 011234444444444444444444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-06 Score=82.08 Aligned_cols=197 Identities=12% Similarity=0.036 Sum_probs=157.8
Q ss_pred chhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010057 292 IDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILI 371 (519)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (519)
.+...+.+|+..|+..+|..+..+..+ -+|+...|..+....-...-+++|.++++..... .-..+.....
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~ 496 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLIL 496 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccc
Confidence 456678899999999999998888766 4788888988888877777788899888765432 1111111233
Q ss_pred hcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhcCCHHHHHHH
Q 010057 372 KLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKALKI 450 (519)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~ 450 (519)
+.++++++.+.|+.-.+.+ +.-..+|-.+-.+..+.+++..|.+.|.......|| ...||.+-.+|.+.|+..+|...
T Consensus 497 ~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred cchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 4688999999998887754 345667777777788999999999999988887665 67999999999999999999999
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccc
Q 010057 451 YKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSK 499 (519)
Q Consensus 451 ~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 499 (519)
+++..+.+ .-+...|...+-...+.|.+++|.+.++++.++.-+...+
T Consensus 576 l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~ 623 (777)
T KOG1128|consen 576 LKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDD 623 (777)
T ss_pred HHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccc
Confidence 99999988 5667888888889999999999999999998887666633
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00016 Score=62.55 Aligned_cols=310 Identities=12% Similarity=0.064 Sum_probs=179.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHH
Q 010057 139 YTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM---EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNI-LIE 214 (519)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-li~ 214 (519)
.--+-..+...|++..|+..|....+- |+..|.++. ..|...|+...|+.=+..+.+ ..||-..-.. -..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhch
Confidence 334445555666666666666666553 333333332 355566666666666666655 3455432111 123
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchh
Q 010057 215 KCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQ 294 (519)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (519)
.+.+.|.++.|..=|+.+.+..... .....+-..+ ...++.. ...
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~--~~~~eaqskl---~~~~e~~------------------------------~l~ 159 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSN--GLVLEAQSKL---ALIQEHW------------------------------VLV 159 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCc--chhHHHHHHH---HhHHHHH------------------------------HHH
Confidence 4556677777777777666654321 1111111000 0000000 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIMDKSIQL-DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKL 373 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (519)
..+..+...||...+...+..+.. +.| +...+..-..+|...|.+..|+.=++...+.. .-+..++--+-..+...
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhh
Confidence 234455667777777777777654 344 44455566677788888888887777766654 23444455556667777
Q ss_pred CCcchHHHHHHHHHhcCCCccchhHHHHH-------------HHHhcCCCcchHHHHhhhCCcCCCC-----chhHHHHH
Q 010057 374 NTFPKVAEIVEEMTKAGHSLGVYLGALLI-------------HRLGSARRPVPAAKIFSLLPEDQKC-----TATYTALI 435 (519)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------------~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~li 435 (519)
|+.+.++...++.++.+ |+....-... ......+++.++.+..+...+..|. ...+..+-
T Consensus 237 gd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC 314 (504)
T ss_pred hhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence 88888888888877754 4443221111 1123345555555555554444343 22344566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 436 GVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
.+|...+++.+|++.-.+..+. .|| ..++.-=..+|.-..+++.|+.-|++..+.+++.
T Consensus 315 ~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 315 TCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred ecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 6777788999999988888766 454 6777777788888888999999999888887753
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-05 Score=67.88 Aligned_cols=81 Identities=12% Similarity=-0.027 Sum_probs=42.2
Q ss_pred HhcCCCcchHHHHhhhCCcC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhH
Q 010057 405 LGSARRPVPAAKIFSLLPED---QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSD 481 (519)
Q Consensus 405 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~ 481 (519)
+.+.|+++.|.+.+..|+-. .-|++|...+.-.-. .+++-+..+-+.-+.... +-...||..++-.|++..-++-
T Consensus 251 eyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 251 EYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred hhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhH
Confidence 34556666666666666543 234555443322211 233444444444444442 2345566666667777666666
Q ss_pred HHHHHH
Q 010057 482 AEIYRK 487 (519)
Q Consensus 482 a~~~~~ 487 (519)
|-.++-
T Consensus 329 AADvLA 334 (459)
T KOG4340|consen 329 AADVLA 334 (459)
T ss_pred HHHHHh
Confidence 666554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.6e-05 Score=71.86 Aligned_cols=367 Identities=16% Similarity=0.118 Sum_probs=196.4
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 123 (519)
..|.+|+.+++.+.. . ....--|..+...|+..|+++.|+++|.+. ..++-.|..|.+.|+++.|.++
T Consensus 746 kew~kai~ildniqd-q--k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQD-Q--KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhHhHHHHhhh-h--ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHH
Confidence 578888888887742 2 222334677778888888888888887432 2355567788888888888877
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010057 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQ 203 (519)
Q Consensus 124 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 203 (519)
-++.. |.......|-+-..-+-+.|++.+|+++|-... .|+. -|.+|-+.|..+..+++.+.-....
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~-- 880 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH-- 880 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChhh--
Confidence 66543 334455566666666777888888888775443 2443 4567777777777777665442211
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHH
Q 010057 204 PDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVT 283 (519)
Q Consensus 204 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (519)
-..|-..+..-+-..|++..|+.-|-+..+ +......|...+-+++..+.
T Consensus 881 -l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri-------------------- 930 (1636)
T KOG3616|consen 881 -LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI-------------------- 930 (1636)
T ss_pred -hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH--------------------
Confidence 112444455556666777777666554332 11111122111111111110
Q ss_pred hccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHH
Q 010057 284 TDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAY 363 (519)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (519)
....+.......+++...+.-.-+.|.++++.. | ....-+...|.++.++-|.++-+...+.. .|...
T Consensus 931 aktegg~n~~k~v~flwaksiggdaavkllnk~---g------ll~~~id~a~d~~afd~afdlari~~k~k-~~~vh-- 998 (1636)
T KOG3616|consen 931 AKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEVH-- 998 (1636)
T ss_pred HhccccccHHHHHHHHHHHhhCcHHHHHHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccch--
Confidence 011122233344555555555555666666542 1 23344555677788888888777666543 22222
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHH-----HHHHHhcCC-CcchHHHHhhhCCc----------CCCC
Q 010057 364 LALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGAL-----LIHRLGSAR-RPVPAAKIFSLLPE----------DQKC 427 (519)
Q Consensus 364 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g-~~~~A~~~~~~~~~----------~~~~ 427 (519)
..+..-+-..|++++|.+-|-+.++.+.- +. +|.. .=.-+.+.| ++++|.++|-.-.. ..|+
T Consensus 999 lk~a~~ledegk~edaskhyveaiklnty-ni-twcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~ 1076 (1636)
T KOG3616|consen 999 LKLAMFLEDEGKFEDASKHYVEAIKLNTY-NI-TWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCED 1076 (1636)
T ss_pred hHHhhhhhhccchhhhhHhhHHHhhcccc-cc-hhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChh
Confidence 22333456778888888888777765421 10 1100 001122333 45555555421110 1111
Q ss_pred --chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 010057 428 --TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKE 488 (519)
Q Consensus 428 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~ 488 (519)
+..|..-.++-...|++.+|..++-+. -+|| ..++-|...+.|..|.++.+.
T Consensus 1077 ~l~dv~tgqar~aiee~d~~kae~fllra----nkp~-----i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1077 LLADVLTGQARGAIEEGDFLKAEGFLLRA----NKPD-----IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred hhHHHHhhhhhccccccchhhhhhheeec----CCCc-----hHHHHHHHhccChHHHHHHHh
Confidence 122333333334456666665554322 2454 344566677777777777653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00016 Score=76.86 Aligned_cols=338 Identities=9% Similarity=-0.040 Sum_probs=165.8
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC--C----CCCh--hhHHHHHHHHH
Q 010057 76 FGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKE--C----YPTI--VSYTAYMKILF 147 (519)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~----~p~~--~~~~~li~~~~ 147 (519)
....|++..+...++.+.......+..........+...|+++++...+......- . .|.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 34456666666665554321111122222333444455667777766666554320 0 0111 11122223345
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHh
Q 010057 148 LNDRVKEATDVYKEMIQRGLPPNC----YTYTVLMEYLVRAGKYEEALEIFSKMQEA----GV-QPDKAACNILIEKCCK 218 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~ 218 (519)
..|++++|...+++....--..+. ...+.+...+...|++++|...+.+.... |- .+...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 667777777777666542111111 23344555566677777777776665432 11 1112244445556666
Q ss_pred cCChHHHHHHHHHHHHcCCc---cCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhH
Q 010057 219 AGETRTIILILRYMKENRLA---LRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQG 295 (519)
Q Consensus 219 ~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (519)
.|+++.|...+++.....-. +...... .....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~---------------------------------------------~~~~~ 578 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHE---------------------------------------------FLLRI 578 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHH---------------------------------------------HHHHH
Confidence 77777777776665441000 0000000 00111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--CCCc--cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCC-cCHHHH-----HH
Q 010057 296 LVLILLKKKNLVAIDSLLSGIMDK--SIQL--DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLN-LERTAY-----LA 365 (519)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~-----~~ 365 (519)
+...+...|+++.|...+...... ...+ ....+..+...+...|++++|.+.+......... .....+ ..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 222344456666666655554321 1111 1223334455566677888887777766442100 000101 11
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCccc---hhHHHHHHHHhcCCCcchHHHHhhhCCcC----CC---CchhHHHHH
Q 010057 366 LIGILIKLNTFPKVAEIVEEMTKAGHSLGV---YLGALLIHRLGSARRPVPAAKIFSLLPED----QK---CTATYTALI 435 (519)
Q Consensus 366 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---~~~~~~~li 435 (519)
.+..+...|+.+.|.+.+............ .....+..++...|+.++|...++..... +. ...+...+.
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 123344567777777776655432111110 11234556677778888888877765432 11 123556667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 010057 436 GVYFSAGSADKALKIYKTMCRKG 458 (519)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~~g 458 (519)
.++.+.|+.++|...+.+..+..
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 77888899999999888887764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.5e-05 Score=76.52 Aligned_cols=133 Identities=12% Similarity=0.124 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHC-CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010057 100 DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK-ECYPT---IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYT 175 (519)
Q Consensus 100 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 175 (519)
+...|-..|..+...++.++|.+++++.... +++-. ...|.++++.-...|.-+...++|++..+. --.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4457777788888888888888888877654 11111 235777777777777777888888887774 11234677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 176 VLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 176 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
.|...|.+.+.+++|.++++.|.+. +.-....|...+..+.++++-+.|..++.+..+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 7888888888888888888888765 2245567888888888888888888888877663
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-05 Score=74.66 Aligned_cols=259 Identities=15% Similarity=0.107 Sum_probs=167.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHH
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP-DKAACNILIEKCCKAGETRT 224 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~ 224 (519)
+.+.|++.+|.-.|+.....+ +-+...|-.|.......++-..|+..+.++.+. .| +.....+|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence 456788888888888877763 225667888888888888888888888888774 34 44577777777877787778
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcC
Q 010057 225 IILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKK 304 (519)
Q Consensus 225 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (519)
|...++......++-..... .+...
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~---------a~~~~---------------------------------------------- 396 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVS---------AGENE---------------------------------------------- 396 (579)
T ss_pred HHHHHHHHHHhCccchhccc---------cCccc----------------------------------------------
Confidence 88877766554322000000 00000
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHh-CCCCcCHHHHHHHHHHHHhcCCcchHHHHH
Q 010057 305 NLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVK-MDLNLERTAYLALIGILIKLNTFPKVAEIV 383 (519)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 383 (519)
+.+ ..+-.++.. ......++|-.+.. .+..+|+.....|.-.|--.|++++|...|
T Consensus 397 ~~~----------~~~s~~~~~-------------~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 397 DFE----------NTKSFLDSS-------------HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred ccc----------CCcCCCCHH-------------HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 000 000011111 22233344444433 344567777777777788888888888888
Q ss_pred HHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHH---CC-
Q 010057 384 EEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKALKIYKTMCR---KG- 458 (519)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g- 458 (519)
+.++... +.|..+||-|...++...+.++|+..+++..+..|+ +.++-.|.-+|...|.+++|.+.|=..+. .+
T Consensus 454 ~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 454 EAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred HHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 8888765 457778888888888888888888888888887776 45666777889999999999998876543 21
Q ss_pred -----CCCCcccHHHHHHHHHhcCChhHHHHHH
Q 010057 459 -----IHPSLGTFNVLLAGLEKLGRVSDAEIYR 486 (519)
Q Consensus 459 -----~~p~~~t~~~l~~~~~~~g~~~~a~~~~ 486 (519)
-.++...|.+|=.++.-.+..|.+.+..
T Consensus 533 ~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 533 NHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred ccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 1123346666666666666666555444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.9e-06 Score=72.48 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 433 ALIGVYFSAGSADKALKIYKTMCRKG--IHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 433 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
.+...|.+.|++++|+..+++..+.. -+.....+..+..++.+.|++++|..+++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 45667888999999999999998772 112346788999999999999999999988765443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0008 Score=62.06 Aligned_cols=404 Identities=14% Similarity=0.037 Sum_probs=225.6
Q ss_pred HhhhccCChhHHHHHHHhC-CCCCCHH-HHHHHHhcC---CChHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHhcCCh
Q 010057 9 YKILKYSTWDSAQDLLKNL-PIKWDSY-TVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHD-RFTYTTMLDIFGEAKRI 82 (519)
Q Consensus 9 ~~~~~~~~~~~a~~~~~~~-~~~p~~~-~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~ 82 (519)
-..+..|++++|+..|.+. .+.|+.. .|+.-..++ |++++|++=-..- ..+.|+ ...|+-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~---~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKT---RRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHH---HhcCCchhhHHHHhHHHHHhcccH
Confidence 3456789999999999987 6666533 333333322 7888777644433 334665 45688888888889999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhh---HHHHHHHHHHC---CCCCChhhHHHHHHHHHh--------
Q 010057 83 SSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG---AVNIWEEMKLK---ECYPTIVSYTAYMKILFL-------- 148 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~---~~~p~~~~~~~li~~~~~-------- 148 (519)
++|..-|.+-.+.... |...++-+..++........ --.++..+... ........|..++..+-+
T Consensus 87 ~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 9999999988887432 56677778777721110000 00111111100 000011223333322211
Q ss_pred --cCCHHHHHHHHHH-----HHHCC-------CCC------------C----------HHHHHHHHHHHHHcCCHHHHHH
Q 010057 149 --NDRVKEATDVYKE-----MIQRG-------LPP------------N----------CYTYTVLMEYLVRAGKYEEALE 192 (519)
Q Consensus 149 --~~~~~~a~~~~~~-----m~~~g-------~~p------------~----------~~~~~~li~~~~~~~~~~~a~~ 192 (519)
..+...+...+.. +...| ..| | ..-...+.++..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 1111111111110 00001 111 0 1123456667777778888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCccc
Q 010057 193 IFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEF 272 (519)
Q Consensus 193 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 272 (519)
-+....+.. -+..-++..-.+|...|.+..+...-....+.|.... ..+..+-.++.+
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-ad~klIak~~~r------------------- 303 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-ADYKLIAKALAR------------------- 303 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-HHHHHHHHHHHH-------------------
Confidence 888877753 3555556666778888888777776666555443211 111111111111
Q ss_pred ccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 010057 273 ISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSV 352 (519)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 352 (519)
+-..+.+.++++.+...+.+.......|+.. .+....++++.......
T Consensus 304 -----------------------~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a 351 (539)
T KOG0548|consen 304 -----------------------LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA 351 (539)
T ss_pred -----------------------hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH
Confidence 2224555677777777777755444443321 12223344444443332
Q ss_pred hCCCCcCHHH-HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chh
Q 010057 353 KMDLNLERTA-YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TAT 430 (519)
Q Consensus 353 ~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~ 430 (519)
-. .|.... ...-...+.+.|++..|...|.++++.. +.|...|....-+|.+.|.+..|.+=-+...+..|+ ...
T Consensus 352 ~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 352 YI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred hh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence 22 232221 2222566778899999999999988876 678888888888999999988888777666665443 445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 010057 431 YTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK 475 (519)
Q Consensus 431 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~ 475 (519)
|.-=..++.-..+|++|++.|.+..+.+ |+..-+.--+.-|..
T Consensus 429 y~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 5555556666678889999998888773 554444444444433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00054 Score=59.42 Aligned_cols=186 Identities=9% Similarity=0.074 Sum_probs=119.0
Q ss_pred cCCChHHHHHHHHHHhhcCCCCCCHHHHHHH---HHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCh
Q 010057 42 THPPMEKAWLFFNWVSRSRGFNHDRFTYTTM---LDIFGEAKRISSMKYVFELMQEKGINIDAV-TYTSVMHWLSNAGDV 117 (519)
Q Consensus 42 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~ 117 (519)
+.|++..|+.-|...+ .-|+..|.++ ...|...|+...|..=+....+. +||-. ....--..+.+.|.+
T Consensus 50 a~~Q~sDALt~yHaAv-----e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAV-----EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HhhhHHHHHHHHHHHH-----cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccH
Confidence 4478888888888775 3333334433 45677788888888888887775 55532 222223466788889
Q ss_pred hhHHHHHHHHHHCCCCCC--hhhH------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010057 118 DGAVNIWEEMKLKECYPT--IVSY------------TAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183 (519)
Q Consensus 118 ~~a~~~~~~m~~~~~~p~--~~~~------------~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 183 (519)
+.|..=|+........-+ ...+ ...+..+...|+...|......+++- .+-|...|..=..+|..
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHh
Confidence 999888888877632110 1111 12334455677888888888877774 24466777777778888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 184 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
.|++..|+.=++...+..- -+..++--+-..+...|+.+.++..+++..+.+
T Consensus 202 ~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLD 253 (504)
T ss_pred cCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC
Confidence 8888887766666655322 244455555666777788888777777766644
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.1e-05 Score=67.40 Aligned_cols=170 Identities=15% Similarity=0.094 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCh--hhH
Q 010057 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGIN-I-DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTI--VSY 139 (519)
Q Consensus 64 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~ 139 (519)
.....+-.+...+...|+++.|...|+.+.+.... | ....+..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556666777777788888888888877765321 1 1235666777777888888888888887765221111 134
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHH-HH-----------------HHHHHHHHHcCCHHHHHHH
Q 010057 140 TAYMKILFLN--------DRVKEATDVYKEMIQRGLPPNCY-TY-----------------TVLMEYLVRAGKYEEALEI 193 (519)
Q Consensus 140 ~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~-----------------~~li~~~~~~~~~~~a~~~ 193 (519)
..+..++... |+.++|.+.|+.+... .|+.. .+ ..+...|.+.|++++|...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 4444444443 6677788888887765 23321 11 1345667888999999999
Q ss_pred HHHHHHcCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 194 FSKMQEAGV-QP-DKAACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 194 ~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
++...+... .| ....+..+..++...|++++|..+++.+...
T Consensus 189 ~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 189 FETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999887521 12 3568889999999999999999998887664
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.2e-05 Score=76.66 Aligned_cols=162 Identities=12% Similarity=0.087 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC-CccchhHHHHHHH
Q 010057 326 AVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH-SLGVYLGALLIHR 404 (519)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~ 404 (519)
..|..|...|.+.+..++|-++|+.|.+.= .-....|...+..+.+..+-+.|..++.+.++.=- .-......-.+..
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 456777788888888999999999888752 24567788889999999999999999999887531 1234455556666
Q ss_pred HhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhcCChhH
Q 010057 405 LGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS--LGTFNVLLAGLEKLGRVSD 481 (519)
Q Consensus 405 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~l~~~~~~~g~~~~ 481 (519)
-.+.|+.+++..+|+..... |.....|+.+|..-.++|+.+.+..+|++.++.++.|- ...|...+.-=...|+-+.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 77899999999999876654 45678999999999999999999999999999987765 3456666654455666554
Q ss_pred HHHHHHH
Q 010057 482 AEIYRKE 488 (519)
Q Consensus 482 a~~~~~~ 488 (519)
++..-.+
T Consensus 1690 vE~VKar 1696 (1710)
T KOG1070|consen 1690 VEYVKAR 1696 (1710)
T ss_pred HHHHHHH
Confidence 4443333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-05 Score=66.57 Aligned_cols=155 Identities=10% Similarity=0.052 Sum_probs=106.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCc
Q 010057 297 VLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTF 376 (519)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (519)
+..|...|++..+..-.+.+.. |. ..+...++.++++..++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3467778887776433322211 10 01223556677777777777665 55677788888888889999
Q ss_pred chHHHHHHHHHhcCCCccchhHHHHHHH-HhcCCC--cchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHH
Q 010057 377 PKVAEIVEEMTKAGHSLGVYLGALLIHR-LGSARR--PVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYK 452 (519)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 452 (519)
++|...|+...+.. +.+...+..+..+ +...|+ .++|.+++++..+..| ++..+..+...+.+.|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998888865 4466666777765 356666 4788888887777644 56778888888888888888888888
Q ss_pred HHHHCCCCCCcccH
Q 010057 453 TMCRKGIHPSLGTF 466 (519)
Q Consensus 453 ~m~~~g~~p~~~t~ 466 (519)
++.+.. +|+....
T Consensus 169 ~aL~l~-~~~~~r~ 181 (198)
T PRK10370 169 KVLDLN-SPRVNRT 181 (198)
T ss_pred HHHhhC-CCCccHH
Confidence 888774 5554443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.002 Score=64.15 Aligned_cols=218 Identities=14% Similarity=0.130 Sum_probs=135.6
Q ss_pred hhHHhhhccCChhHHHHHHHhCCCCCCHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHH
Q 010057 6 SNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSM 85 (519)
Q Consensus 6 ~~i~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 85 (519)
..+..++..|++++++-...+.|..|+...+..-+.. ..++++.++...+.+..+...| ++.+...+...+....+
T Consensus 486 KVi~cfAE~Gqf~KiilY~kKvGyTPdymflLq~l~r-~sPD~~~qFa~~l~Q~~~~~~d---ie~I~DlFme~N~iQq~ 561 (1666)
T KOG0985|consen 486 KVIQCFAETGQFKKIILYAKKVGYTPDYMFLLQQLKR-SSPDQALQFAMMLVQDEEPLAD---IEQIVDLFMELNLIQQC 561 (1666)
T ss_pred HHHHHHHHhcchhHHHHHHHHcCCCccHHHHHHHHHc-cChhHHHHHHHHhhccCCCccc---HHHHHHHHHHHHhhhhh
Confidence 3455677788888888888888999997776555444 4678888888777654432223 23333333322222222
Q ss_pred HHHHHHH-------------------HhC-----------CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 010057 86 KYVFELM-------------------QEK-----------GINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT 135 (519)
Q Consensus 86 ~~~~~~m-------------------~~~-----------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 135 (519)
-..+-.. ... +.- +..-+..+.+.|.+.|-..+|++-+.++... + -
T Consensus 562 TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DI--K-R 637 (1666)
T KOG0985|consen 562 TSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDI--K-R 637 (1666)
T ss_pred HHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHH--H-H
Confidence 2222111 111 111 1222566788899999999999888776532 1 1
Q ss_pred hhhHHH-----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------
Q 010057 136 IVSYTA-----YMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA---------- 200 (519)
Q Consensus 136 ~~~~~~-----li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------- 200 (519)
....+. -+-.|...-.++.+.+.+..|...++..|..+...+..-|...=-.+..+++|+..+.-
T Consensus 638 ~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSi 717 (1666)
T KOG0985|consen 638 VVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSI 717 (1666)
T ss_pred HHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHH
Confidence 111111 12345556678889999999998888888887777777676666666667777665432
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 201 -GVQPDKAACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 201 -g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
++.-|..+.--.|.+.++.|++.+++++.++
T Consensus 718 vn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 718 VNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred hccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 2445666666778888999988877777654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.9e-05 Score=68.69 Aligned_cols=200 Identities=11% Similarity=0.050 Sum_probs=145.8
Q ss_pred CCCHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010057 30 KWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMH 109 (519)
Q Consensus 30 ~p~~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 109 (519)
.|+++.-...+-.-|++..|.-.|+..+++. +-+...|..|....+..++-..|+..+.+..+.... |....-.|.-
T Consensus 285 ~pdPf~eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAV 361 (579)
T KOG1125|consen 285 HPDPFKEGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAV 361 (579)
T ss_pred CCChHHHHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHH
Confidence 4667776666666788999999999887654 557788999998888888888899888888887443 5677777888
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 010057 110 WLSNAGDVDGAVNIWEEMKLKECY--------PTIVSYTAYMKILFLNDRVKEATDVYKEMIQ-RGLPPNCYTYTVLMEY 180 (519)
Q Consensus 110 ~~~~~g~~~~a~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~ 180 (519)
.|...|.-..|..+++.-.....+ ++...-+. ..+.....+....++|-++.. .+..+|+.....|.-.
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 888888888888888876543210 01110000 222333344555666666554 4445788888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 181 LVRAGKYEEALEIFSKMQEAGVQP-DKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 181 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
|--.|++++|.+.|+..... .| |..+||-|.-.++...+.++|+..|.+.++..
T Consensus 440 y~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq 494 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ 494 (579)
T ss_pred HhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC
Confidence 88899999999999988874 45 55689999999998899999999999887744
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00011 Score=61.40 Aligned_cols=175 Identities=16% Similarity=0.093 Sum_probs=127.4
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcC
Q 010057 311 SLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAG 390 (519)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 390 (519)
++.+.+.......+......-...|+..+++++|++..+... +......=+..+.+..+++-|.+.++.|.+..
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344444444444444444444556889999999999887621 33334444556778889999999999998753
Q ss_pred CCccchhHHHHHHHH----hcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc
Q 010057 391 HSLGVYLGALLIHRL----GSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGT 465 (519)
Q Consensus 391 ~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 465 (519)
+..+.+-|..++ .-.+.+.+|.-+|+++.++ +|++.+.+....++...|++++|..++++...+. .-++.|
T Consensus 168 ---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpet 243 (299)
T KOG3081|consen 168 ---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPET 243 (299)
T ss_pred ---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHH
Confidence 445555555554 4456699999999999985 7888999999999999999999999999999885 456788
Q ss_pred HHHHHHHHHhcCChhHH-HHHHHHhcccCcc
Q 010057 466 FNVLLAGLEKLGRVSDA-EIYRKEKKSIQAD 495 (519)
Q Consensus 466 ~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~ 495 (519)
+..++..-...|+..++ .+.+.+++...|.
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 88888777777876554 6677777666654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00016 Score=64.97 Aligned_cols=203 Identities=10% Similarity=0.046 Sum_probs=145.7
Q ss_pred hhccCChhHHHHHHHhC-CCCCCHHHH-H---HHHhcCC-ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCh--
Q 010057 11 ILKYSTWDSAQDLLKNL-PIKWDSYTV-N---QVLKTHP-PMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRI-- 82 (519)
Q Consensus 11 ~~~~~~~~~a~~~~~~~-~~~p~~~~~-~---~ll~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-- 82 (519)
+...++.++|+.+.+++ ...|+.++. + .++...+ ++++++..++.+.+.. +.+..+|+..-..+.+.++.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCchhh
Confidence 33456889999999987 556665542 2 2444556 6789999999887543 55667788776666666653
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CC----HHHH
Q 010057 83 SSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLN---DR----VKEA 155 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~----~~~a 155 (519)
+++...++.+.+.... |..+|+....++...|+++++++.++++.+.+.. |..+|+.....+.+. |. .++.
T Consensus 125 ~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 6778888888887655 7889999988999999999999999999887654 677787766665554 22 2466
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRA----GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKA 219 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 219 (519)
++...+++... +-|...|+-+...+... +...+|.+.+.+..+.+ ..+......|+..|+..
T Consensus 203 l~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 203 LKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 77776776653 33667888888877763 34466888888876643 23666888888888864
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00026 Score=63.72 Aligned_cols=50 Identities=14% Similarity=0.120 Sum_probs=27.5
Q ss_pred CCCchhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 010057 425 QKCTATYTALIGVYFSA----GSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK 475 (519)
Q Consensus 425 ~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~ 475 (519)
+.|..+|+-+...+... ++..+|.+.+.+....+ +.++..+..+++.|+.
T Consensus 214 P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 214 PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 34556666666666552 23345666666655432 3345566666666654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.9e-07 Score=51.50 Aligned_cols=35 Identities=37% Similarity=0.703 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSL 463 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 463 (519)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00018 Score=60.03 Aligned_cols=164 Identities=15% Similarity=0.021 Sum_probs=133.3
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHH
Q 010057 63 NH-DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTA 141 (519)
Q Consensus 63 ~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 141 (519)
.| |... ..+-..+...|+-+....+........ .-|....+..+....+.|++..|...|.+..... ++|..+|+.
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~ 139 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNL 139 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhH
Confidence 44 4444 666677777888888877776654432 2366677779999999999999999999998764 668999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 221 (519)
+--+|.+.|+.++|..-|.+..+.- .-+...+|.|.-.+.-.|+.+.|..++......+. -|..+-..+.......|+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCC
Confidence 9999999999999999999998852 23567888888899999999999999999887643 377788888899999999
Q ss_pred hHHHHHHHHH
Q 010057 222 TRTIILILRY 231 (519)
Q Consensus 222 ~~~a~~~~~~ 231 (519)
++.|.++...
T Consensus 218 ~~~A~~i~~~ 227 (257)
T COG5010 218 FREAEDIAVQ 227 (257)
T ss_pred hHHHHhhccc
Confidence 9999988664
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00063 Score=62.72 Aligned_cols=196 Identities=13% Similarity=0.055 Sum_probs=109.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHH-------HH
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLA-------LI 367 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~ 367 (519)
.+.....+..++..+..-+....... -+..-++..-.+|...|.+.+....-....+.|.. ...-|+. +.
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 45555666666666666666555443 34445556666777777776666666555555421 1122332 33
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCccchhHH-------------------------HHHHHHhcCCCcchHHHHhhhCC
Q 010057 368 GILIKLNTFPKVAEIVEEMTKAGHSLGVYLGA-------------------------LLIHRLGSARRPVPAAKIFSLLP 422 (519)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------------------~l~~~~~~~g~~~~A~~~~~~~~ 422 (519)
.++.+.++++.+...|.......-.|+...-. .-...+.+.|++..|.+.+.++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 35555667777777777765433233221110 11233455667777777776665
Q ss_pred cC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 423 ED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 423 ~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
.. +.|...|....-+|.+.|.+..|++=.+.-++.. ++....|.-=..++....+|++|.+.|++..+.+|
T Consensus 386 kr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 386 KRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred hcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 54 3356677777777777777777777666666552 22223333333344555567777777776666654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.7e-05 Score=63.06 Aligned_cols=115 Identities=7% Similarity=0.090 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC--hhhHHH
Q 010057 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHW-LSNAGD--VDGAVN 122 (519)
Q Consensus 46 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~--~~~a~~ 122 (519)
.++++..++...+.. +.|...|..+...|...|+++.|...|+...+.... +...+..+..+ +...|+ .++|.+
T Consensus 55 ~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 55 PEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 344444444433222 334444555555555555555555555544444322 34444444443 233343 245555
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 123 IWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 123 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 164 (519)
++++..+.... +..++..+...+.+.|++++|...++++.+
T Consensus 132 ~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55554444221 334444444444455555555555555444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00035 Score=70.45 Aligned_cols=240 Identities=10% Similarity=0.069 Sum_probs=149.6
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhH
Q 010057 62 FNH-DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDA-VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSY 139 (519)
Q Consensus 62 ~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 139 (519)
+.| +...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+...++.+.+..+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv---------------- 87 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL---------------- 87 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh----------------
Confidence 344 4567888888888888888888888866665 3332 2333333355555554433333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 010057 140 TAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKA 219 (519)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 219 (519)
.++.......++.-+..+...|... .-+...+-.+..+|-+.|+.+++..+++++.+.. +-|+.+.|.+...|+..
T Consensus 88 -~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 88 -NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred -hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 3444444555555555555556553 2345578888889999999999999999998875 33677888888888888
Q ss_pred CChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHH
Q 010057 220 GETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLI 299 (519)
Q Consensus 220 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (519)
++++|.+++......
T Consensus 164 -dL~KA~~m~~KAV~~---------------------------------------------------------------- 178 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------------------------------------------------------- 178 (906)
T ss_pred -hHHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 999999888876552
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhC-CCCcCHHHHHHHHHHHHhcCCcch
Q 010057 300 LLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM-DLNLERTAYLALIGILIKLNTFPK 378 (519)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 378 (519)
+...+++..+..++..+.... ..+.+.-..+.+.+... +..--..++-.+-..|...+++++
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~~-----------------~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHYN-----------------SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHhhhcchHHHHHHHHHHhcC-----------------cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 223344555555555554322 12333334444444433 323333445566666777778888
Q ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHh
Q 010057 379 VAEIVEEMTKAGHSLGVYLGALLIHRLG 406 (519)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (519)
+..+++.+++.. +.|.....-++.+|.
T Consensus 242 ~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 242 VIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 888888887765 335555555565554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.7e-06 Score=66.96 Aligned_cols=95 Identities=14% Similarity=-0.053 Sum_probs=55.9
Q ss_pred HHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh
Q 010057 401 LIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRV 479 (519)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~ 479 (519)
+...+...|++++|...|+...... .+...|..+..++.+.|++++|+..|++..+.+ +.+...+..+..++...|+.
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 4444555555555555555544432 345566666666666666666666666666553 33455666666666666666
Q ss_pred hHHHHHHHHhcccCccc
Q 010057 480 SDAEIYRKEKKSIQADA 496 (519)
Q Consensus 480 ~~a~~~~~~~~~~~~~~ 496 (519)
++|...+++..++.|+.
T Consensus 109 ~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 109 GLAREAFQTAIKMSYAD 125 (144)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 66666666666665543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.7e-07 Score=49.79 Aligned_cols=33 Identities=36% Similarity=0.679 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGIHP 461 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 461 (519)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00068 Score=68.47 Aligned_cols=167 Identities=8% Similarity=-0.008 Sum_probs=117.6
Q ss_pred HHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010057 33 SYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDR-FTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVM 108 (519)
Q Consensus 33 ~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 108 (519)
...+..++..+ +++++|.++.+..... .|+. ..|-.+.-.+.+.++.+.+..+ .++
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 45566776655 8999999999976544 3433 2233333356666665544444 334
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 010057 109 HWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYE 188 (519)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 188 (519)
.......++..+..+...|...+ -+...+..+..+|-+.|+.++|.+.++++++.. +-|..+.|.+.-.|+.. +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 44444455544555555555442 245588889999999999999999999999976 44788899999999988 999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 189 EALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 189 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
+|.+++...... +....++..+..++.++....+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~ 201 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD 201 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc
Confidence 999998877653 66777888888888888775543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00024 Score=67.83 Aligned_cols=86 Identities=6% Similarity=0.082 Sum_probs=43.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcc
Q 010057 299 ILLKKKNLVAIDSLLSGIMDKSIQL-DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFP 377 (519)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (519)
...+.++++.+...|...... .| +...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+-...+.|.++
T Consensus 528 ~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~e 604 (777)
T KOG1128|consen 528 AALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFE 604 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHH
Confidence 344455555555555544332 22 23445555555555555555555555555554 223334444444555555555
Q ss_pred hHHHHHHHHH
Q 010057 378 KVAEIVEEMT 387 (519)
Q Consensus 378 ~a~~~~~~~~ 387 (519)
+|.+.+..+.
T Consensus 605 da~~A~~rll 614 (777)
T KOG1128|consen 605 DAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHH
Confidence 5555555554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-06 Score=49.75 Aligned_cols=33 Identities=36% Similarity=0.731 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010057 138 SYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN 170 (519)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 170 (519)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-06 Score=48.80 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010057 138 SYTAYMKILFLNDRVKEATDVYKEMIQRGLPP 169 (519)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 169 (519)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.1e-05 Score=62.42 Aligned_cols=156 Identities=13% Similarity=-0.000 Sum_probs=122.4
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcC
Q 010057 329 STIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSA 408 (519)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (519)
..+-..+...|+-+....+........ +-+.......+....+.|++..|...+.+..... ++|...++.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 555566677777777777766654322 3344456667888888999999999999988765 68888999999999999
Q ss_pred CCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 010057 409 RRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRK 487 (519)
Q Consensus 409 g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~ 487 (519)
|++++|..-|.+..+.. .++..+|.|...|.-.|+.+.|..++......+ .-|...-..+..+....|++++|+.+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999988877763 457788888888888999999999999988874 3366677777788889999999988875
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.1e-05 Score=56.18 Aligned_cols=67 Identities=19% Similarity=0.402 Sum_probs=30.3
Q ss_pred CChhhHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010057 115 GDVDGAVNIWEEMKLKEC-YPTIVSYTAYMKILFLND--------RVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181 (519)
Q Consensus 115 g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 181 (519)
+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|++|+..+++|+..||+.++..+
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 444444444444444444 344444444444333321 2233445555555555555555555555544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.1e-05 Score=56.22 Aligned_cols=80 Identities=10% Similarity=0.215 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChhhHHHHHHHHHHCCCCCChhhH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGI-NIDAVTYTSVMHWLSNAG--------DVDGAVNIWEEMKLKECYPTIVSY 139 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~ 139 (519)
-...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556677777999999999999999999 999999999999888753 244677899999999999999999
Q ss_pred HHHHHHHHh
Q 010057 140 TAYMKILFL 148 (519)
Q Consensus 140 ~~li~~~~~ 148 (519)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00015 Score=57.12 Aligned_cols=92 Identities=13% Similarity=-0.024 Sum_probs=43.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 010057 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG 185 (519)
Q Consensus 106 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 185 (519)
.+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+.....+ +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 33444444555555555555544432 1134444455555555555555555555555432 224444444555555555
Q ss_pred CHHHHHHHHHHHHH
Q 010057 186 KYEEALEIFSKMQE 199 (519)
Q Consensus 186 ~~~~a~~~~~~m~~ 199 (519)
++++|...|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0041 Score=56.39 Aligned_cols=438 Identities=11% Similarity=0.068 Sum_probs=211.6
Q ss_pred HhhhccCChhHHHHHHHhC--CCCCCHHHH------HHHHhcC--CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 010057 9 YKILKYSTWDSAQDLLKNL--PIKWDSYTV------NQVLKTH--PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGE 78 (519)
Q Consensus 9 ~~~~~~~~~~~a~~~~~~~--~~~p~~~~~------~~ll~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 78 (519)
..+-+.++.++|.++|-+. ...-+++.+ +.+|.++ .+.+.-........+..|-.+-...+..+. +.+
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~ 91 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV--AYK 91 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHH
Confidence 3456778999999999988 333232332 3445554 667766666666655444333333333332 347
Q ss_pred cCChhHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCChhhHH
Q 010057 79 AKRISSMKYVFELMQEK--GINI------------DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK----ECYPTIVSYT 140 (519)
Q Consensus 79 ~~~~~~a~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~ 140 (519)
.+.+.+|.+.+..-.++ +-.| |...=+..+..+...|++.++..+++++... ...-+..+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78899998888776654 3222 1222245677888999999999999998765 2335788888
Q ss_pred HHHHHHHhc--------CC-------HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 010057 141 AYMKILFLN--------DR-------VKEATDVYKEMIQR------GLPPNCYTYTVLMEYLVRAG--KYEEALEIFSKM 197 (519)
Q Consensus 141 ~li~~~~~~--------~~-------~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m 197 (519)
.++-.+.+. .. ++.+.-...+|... .+.|....+..++....-.. ...--.+++...
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 755554442 11 22333333333321 23444444555544433221 222233333333
Q ss_pred HHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCccC----HHHHHHHHHHHhhcCchhHHHh------hhCC
Q 010057 198 QEAGVQPDKA-ACNILIEKCCKAGETRTIILILRYMKENRLALR----YPVFKEALQTFKVADENDSLLW------QVHP 266 (519)
Q Consensus 198 ~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~------~~~~ 266 (519)
.+.-+.|+.. +...|+..+.+ +.+++..+-+.+....+.+- ..++...+....+..+...... .+.+
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 3344445433 23333333333 34444433333332222111 1222333322222222221110 0000
Q ss_pred CCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH---HHhccC-Chh
Q 010057 267 QFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIE---VNCDHR-RRD 342 (519)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~~~~~-~~~ 342 (519)
...-+... --...........+.. .+.+ ...-..++......++... .....++. -+=+.| .-+
T Consensus 330 ~~svs~Kl-lls~~~lq~Iv~~DD~-------~~Tk---lr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~de 397 (549)
T PF07079_consen 330 RISVSEKL-LLSPKVLQDIVCEDDE-------SYTK---LRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDE 397 (549)
T ss_pred cchhhhhh-hcCHHHHHHHHhcchH-------HHHH---HHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccH
Confidence 00000000 0000000000000000 1111 1222233333333322211 11111121 122233 477
Q ss_pred hHHHHHHHHHhCCCCcCHHHHH----HHHHHHHhc---CCcchHHHHHHHHHhcCCCcc----chhHHHHHHH--HhcCC
Q 010057 343 GALLAFEYSVKMDLNLERTAYL----ALIGILIKL---NTFPKVAEIVEEMTKAGHSLG----VYLGALLIHR--LGSAR 409 (519)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g 409 (519)
+|+++++...+-. +-|..+-+ .+=.+|... ..+.+...+-+-+.+.|++|. ....|.|.++ +...|
T Consensus 398 kalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqg 476 (549)
T PF07079_consen 398 KALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQG 476 (549)
T ss_pred HHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 8888888877642 22333322 222333322 344555556666667787663 3455666555 55677
Q ss_pred CcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH
Q 010057 410 RPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNV 468 (519)
Q Consensus 410 ~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 468 (519)
++.++.-.-..+.+-.|++.+|..+.-+.....++++|..++.. ++|+..+++.
T Consensus 477 ey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 477 EYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred cHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 77777766655555567788888888888888888888888865 3666666553
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.9e-05 Score=74.46 Aligned_cols=140 Identities=7% Similarity=-0.043 Sum_probs=87.9
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHH
Q 010057 357 NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TATYTALI 435 (519)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li 435 (519)
..+...+..|.....+.|.+++|+.+++...+.. +-+......+...+.+.+++++|....++.....|+ ......+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 3445566666666677777777777777776653 223334455566666777777777777666555443 44556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccccc
Q 010057 436 GVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALS 498 (519)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 498 (519)
.++.+.|++++|+.+|++....+ +-+..++..+..++...|+.++|...|++..+...++.+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR 223 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence 66666777777777777776632 233566666666677777777777777776666555543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.8e-05 Score=70.04 Aligned_cols=124 Identities=14% Similarity=0.261 Sum_probs=100.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 010057 96 GINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK--ECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYT 173 (519)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 173 (519)
+...+......+++.+....+++.+..++-+.+.. ....-..|..++++.|.+.|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456777777888888888888888888888765 2323345667999999999999999999999889999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 010057 174 YTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKA 219 (519)
Q Consensus 174 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 219 (519)
+|.||..+.+.|++..|.++..+|..++...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999888777667777777777777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0041 Score=61.92 Aligned_cols=148 Identities=15% Similarity=0.101 Sum_probs=81.3
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhhHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGI-NIDAVTYTSVMHWLSNAGDVDGAVN 122 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~ 122 (519)
.+..+|.+.|+....-. ..+...+......|+...+++.|..+.-..-+... ..-..-|...--.|.+.++...|+.
T Consensus 506 ~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~ 583 (1238)
T KOG1127|consen 506 DDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVC 583 (1238)
T ss_pred HHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHH
Confidence 45667777777664222 33556677788888888888888777433222110 0011223333344556666666666
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHH
Q 010057 123 IWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM--EYLVRAGKYEEALEIFSKM 197 (519)
Q Consensus 123 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li--~~~~~~~~~~~a~~~~~~m 197 (519)
-|+...+..+. |...|..+..+|...|++..|.++|.+.... .|+. +|...- -.-+..|.+.+++..+..+
T Consensus 584 ~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 584 EFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 66666555322 5666667777777777777777777665542 3332 222211 1223445555555555544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=63.19 Aligned_cols=96 Identities=17% Similarity=0.055 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 010057 399 ALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLG 477 (519)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g 477 (519)
..+...+...|+.++|.+.|+.+... +.+...|..+..+|...|++++|...+++..+.+ +.+...+..+...+...|
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcC
Confidence 33444444555555555555544332 2245556666666666666666666666665553 334555555556666666
Q ss_pred ChhHHHHHHHHhcccCcc
Q 010057 478 RVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 478 ~~~~a~~~~~~~~~~~~~ 495 (519)
++++|...+++..++.|+
T Consensus 100 ~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 100 EPESALKALDLAIEICGE 117 (135)
T ss_pred CHHHHHHHHHHHHHhccc
Confidence 666666666666665553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0082 Score=59.18 Aligned_cols=229 Identities=10% Similarity=0.096 Sum_probs=153.6
Q ss_pred hhhHHhhhccCChhHHHHHHHhC----CCCCCHHHHHHHHh-cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 010057 5 ISNVYKILKYSTWDSAQDLLKNL----PIKWDSYTVNQVLK-THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEA 79 (519)
Q Consensus 5 ~~~i~~~~~~~~~~~a~~~~~~~----~~~p~~~~~~~ll~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 79 (519)
+.-|...+..+++..|++...++ |..|-..++.++.. ..|+.++|..+++... ..+ ..|..|...+-..|...
T Consensus 13 ~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~-~~~-~~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 13 LRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALY-GLK-GTDDLTLQFLQNVYRDL 90 (932)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhc-cCC-CCchHHHHHHHHHHHHH
Confidence 45577788889999999888877 33333444444433 4499999999988763 222 33888999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---------
Q 010057 80 KRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLND--------- 150 (519)
Q Consensus 80 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--------- 150 (519)
++.++|..+|+..... .|+......+..+|.|.+.+.+-.++=-+|-+. .+-+...+=.+++.+...-
T Consensus 91 ~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred hhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccc
Confidence 9999999999999876 577888888888999988876654444444332 2224555555665554421
Q ss_pred -CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010057 151 -RVKEATDVYKEMIQRG-LPPNCYTYTVLMEYLVRAGKYEEALEIFS-KMQEAGVQPDKAACNILIEKCCKAGETRTIIL 227 (519)
Q Consensus 151 -~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 227 (519)
-..-|.+.++.+.+.+ ---+..=...-...+...|++++|.+++. ...+.-..-+...-+--+..+...+++.+..+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 1234666777777654 11122112222334456788999999994 34443333344455566788888899999999
Q ss_pred HHHHHHHcCCc
Q 010057 228 ILRYMKENRLA 238 (519)
Q Consensus 228 ~~~~~~~~~~~ 238 (519)
+-.++...+..
T Consensus 248 l~~~Ll~k~~D 258 (932)
T KOG2053|consen 248 LSSRLLEKGND 258 (932)
T ss_pred HHHHHHHhCCc
Confidence 98888887754
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00019 Score=65.99 Aligned_cols=126 Identities=22% Similarity=0.331 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010057 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181 (519)
Q Consensus 102 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 181 (519)
.....|+..+...++++.|..+|+++.+.. |+ ....+++.+...++..+|.+++++..... +-+......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345566777778899999999999999883 44 55568888888999999999999998752 34677777778889
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 182 VRAGKYEEALEIFSKMQEAGVQPDKA-ACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
.+.++++.|+++.+++.+. .|+.. +|..|..+|.+.|+++.|+..+..+.-
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999999884 56555 999999999999999999988886653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00088 Score=66.83 Aligned_cols=146 Identities=10% Similarity=0.037 Sum_probs=115.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
..++..+-.|.....+.|++++|..+++...+.... +......+...+.+.+++++|....++....... +....+.+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 666888888888999999999999999999887332 4567778888999999999999999998887432 45667778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 010057 143 MKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNIL 212 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 212 (519)
..++.+.|++++|..+|++....+ +-+..++..+...+.+.|+.++|...|+...+. ..|....|+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 888889999999999999998742 234778888888999999999999999988765 23344444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0012 Score=55.42 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=71.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh----c
Q 010057 74 DIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL----N 149 (519)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~ 149 (519)
..|...+++++|.+...... +......=+..+.+..+.+-|...++.|.... +..|.+.|..+|.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 34455555555555544311 22333333344445555555555555555442 34444444444443 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHH
Q 010057 150 DRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGET-RTIILI 228 (519)
Q Consensus 150 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~ 228 (519)
+...+|.-+|++|-+. ..|+..+.+-...++...|++++|..++++....... ++.+...+|-+-...|.. +...+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3455555556555543 4555555555555555566666666666555544222 334444444333333332 333344
Q ss_pred HHHHHH
Q 010057 229 LRYMKE 234 (519)
Q Consensus 229 ~~~~~~ 234 (519)
+.+++.
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 444443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00012 Score=57.99 Aligned_cols=124 Identities=15% Similarity=0.073 Sum_probs=57.8
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccc--hhHHHHHH
Q 010057 328 ISTIIEVNCDHRRRDGALLAFEYSVKMDLNL--ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGV--YLGALLIH 403 (519)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~ 403 (519)
|..++..+ ..++...+...++.+.+....- .....-.+...+...|++++|...|+........++. ...-.|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344433 3556666666666666543111 1122333445566667777777777776665411111 11222333
Q ss_pred HHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 010057 404 RLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYK 452 (519)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 452 (519)
.+...|++++|...++........+..+......|.+.|++++|...|+
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444444444444444433322233344444444444444444444444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00055 Score=62.44 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=71.8
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhcCCHHHHH
Q 010057 370 LIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKAL 448 (519)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~ 448 (519)
+...|+++.|+..+..+++.- +.|+.......+.+.+.++.++|.+.++++....|+ ...+-.+..+|.+.|++.+|+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 344566666666666665542 345555555566666666666666666666655454 455556666666666666666
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 010057 449 KIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEK 489 (519)
Q Consensus 449 ~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~ 489 (519)
.+++...... +-|+..|..|..+|...|+..+|.....+.
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 6666665552 445666666666666666666555554443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00019 Score=65.91 Aligned_cols=127 Identities=14% Similarity=0.178 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
......+++.+...++++.|..+|+++.+.. |+ ....+++.+...++..+|.+++++..... +-+......-...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3456677778888899999999999999884 44 45568888888899999999999988662 2356666667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPPNC-YTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
+.+.++.+.|+++.+++.+. .|+. .+|..|..+|...|+++.|+..++.+.-
T Consensus 244 Ll~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 89999999999999999985 5654 5999999999999999999999988764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.8e-06 Score=45.36 Aligned_cols=31 Identities=35% Similarity=0.687 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGI 459 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 459 (519)
++|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.5e-05 Score=69.69 Aligned_cols=124 Identities=11% Similarity=0.079 Sum_probs=106.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhh
Q 010057 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEK--GINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVS 138 (519)
Q Consensus 61 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 138 (519)
+.+.+......++..+....+.+.+..++-..... ....-..|.+++|+.|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34567778888899988888999999999888765 2323345678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010057 139 YTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184 (519)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 184 (519)
+|.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999887777888887777766665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00032 Score=54.87 Aligned_cols=94 Identities=9% Similarity=0.039 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 148 (519)
...+...+...|++++|.+.|+.+.+.+. .+...+..+...+...|++++|...+++....+ +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 33444444445555555555555444322 134444444455555555555555555444332 1233444444444455
Q ss_pred cCCHHHHHHHHHHHHH
Q 010057 149 NDRVKEATDVYKEMIQ 164 (519)
Q Consensus 149 ~~~~~~a~~~~~~m~~ 164 (519)
.|++++|.+.|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555544444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.001 Score=60.79 Aligned_cols=178 Identities=10% Similarity=-0.010 Sum_probs=122.3
Q ss_pred CChhHHHHHHHhC-----CCCCCHHHHHHHHhcC--CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010057 15 STWDSAQDLLKNL-----PIKWDSYTVNQVLKTH--PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKY 87 (519)
Q Consensus 15 ~~~~~a~~~~~~~-----~~~p~~~~~~~ll~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 87 (519)
.++.++...-+++ .-.|+...+...+... +........+..+.... .-...-|..-+.. ...|.+++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~~-~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQT-YLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHHH-HHhcccchHHH
Confidence 3455566666666 2334555555555422 12222222222222221 1223335444444 46789999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010057 88 VFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVKEATDVYKEMIQRG 166 (519)
Q Consensus 88 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 166 (519)
.++.+.+.-. -|+.-+......+.+.|+.++|.+.++.+... .|+ ...+-.+..++.+.|++.+|..+++.....
T Consensus 328 ~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~- 403 (484)
T COG4783 328 LLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN- 403 (484)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-
Confidence 9999988632 25555566678999999999999999999877 566 556677888999999999999999998876
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 167 LPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 167 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
.+-|+..|..|..+|...|+..++.....+...
T Consensus 404 ~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 404 DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 355889999999999999999999888877765
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00083 Score=53.16 Aligned_cols=85 Identities=16% Similarity=0.245 Sum_probs=35.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010057 144 KILFLNDRVKEATDVYKEMIQRGLPPN--CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 221 (519)
..+...|++++|...|+........|+ ......|...+...|++++|+..++...... .....+......|.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCC
Confidence 334444455555555544444321111 1122233444444455555555444322211 122233344444555555
Q ss_pred hHHHHHHHH
Q 010057 222 TRTIILILR 230 (519)
Q Consensus 222 ~~~a~~~~~ 230 (519)
+++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 555554444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.3e-05 Score=43.90 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 138 SYTAYMKILFLNDRVKEATDVYKEMIQR 165 (519)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 165 (519)
+|+.+|++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.028 Score=56.33 Aligned_cols=420 Identities=14% Similarity=0.092 Sum_probs=240.0
Q ss_pred CChHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHD-RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 122 (519)
.+...|+..|-+..+. .|+ ...|..|...|+...+...|.+.|+..-+..-. +...+......|++..+++.|..
T Consensus 472 K~~~~al~ali~alrl---d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL---DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHH
Confidence 5677777776655432 343 457999999999888999999999998876433 67788899999999999999999
Q ss_pred HHHHHHHCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010057 123 IWEEMKLKEC-YPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG 201 (519)
Q Consensus 123 ~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 201 (519)
+.-...+... ..-...|...--.|.+.++...|..-|+...... +-|...|..+..+|.+.|.+..|.++|.....
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~-- 624 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL-- 624 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--
Confidence 9444333211 1112233334445778999999999999988753 23777999999999999999999999998876
Q ss_pred CCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCC-------ccCHHH-------------------HHHHHHHHh-
Q 010057 202 VQPDKAACNILIE--KCCKAGETRTIILILRYMKENRL-------ALRYPV-------------------FKEALQTFK- 252 (519)
Q Consensus 202 ~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~-------------------~~~~l~~~~- 252 (519)
+.|+. +|.-.-. .-+..|.+.++...+..+..... ..-... +...+..+.
T Consensus 625 LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 625 LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 45543 3333222 23456778777777766544210 000011 111111110
Q ss_pred ---hcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHh----cCCHHHHHHHH----HHHHhcCC
Q 010057 253 ---VADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLK----KKNLVAIDSLL----SGIMDKSI 321 (519)
Q Consensus 253 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~----~~~~~~~~ 321 (519)
.....+...|.+.+... ..+ .... +..+...++..+.+ .+...+-.-++ ........
T Consensus 704 ~l~h~~~~~~~~Wi~asdac----------~~f-~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl 771 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIVASDAC----------YIF-SQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL 771 (1238)
T ss_pred HHHHhhhhhHHHHHHHhHHH----------HHH-HHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH
Confidence 00011111221111100 000 0011 11222222222222 11110000000 00001111
Q ss_pred CccHHHHHHHHHHHhc----cC----ChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCc
Q 010057 322 QLDSAVISTIIEVNCD----HR----RRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSL 393 (519)
Q Consensus 322 ~~~~~~~~~li~~~~~----~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (519)
..+..+|..+...|.+ .+ +...|+..+....+.. .-+..+|+.|.-. ...|++.-+..-|-.-.... +.
T Consensus 772 ~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~ 848 (1238)
T KOG1127|consen 772 AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PT 848 (1238)
T ss_pred hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-cc
Confidence 1122233333322222 11 3346777777766543 2355666666544 55577776666655554433 34
Q ss_pred cchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCcccHHH
Q 010057 394 GVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCR----KGIHPSLGTFNV 468 (519)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~~~ 468 (519)
...+|..+.-.+....+++-|...|.......| |...|-.....-...|+.-++..+|..--+ .|--|+..-|-+
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c 928 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLC 928 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHH
Confidence 556666676678888999999999999988754 567787666666778888888888877322 233455555555
Q ss_pred HHHHHHhcCChhHHHHHH
Q 010057 469 LLAGLEKLGRVSDAEIYR 486 (519)
Q Consensus 469 l~~~~~~~g~~~~a~~~~ 486 (519)
........|+.++-..-.
T Consensus 929 ~te~h~~Ng~~e~~I~t~ 946 (1238)
T KOG1127|consen 929 ATEIHLQNGNIEESINTA 946 (1238)
T ss_pred HHHHHHhccchHHHHHHh
Confidence 555556666655544433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0022 Score=53.47 Aligned_cols=172 Identities=13% Similarity=0.054 Sum_probs=119.2
Q ss_pred CCccHHH-HHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHH
Q 010057 321 IQLDSAV-ISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGA 399 (519)
Q Consensus 321 ~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (519)
..++..+ |-.++-+....|+.+-|...++.+...- +-+...-..-..-+-..|++++|.++++.+++.+ +.|..++.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~K 124 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRK 124 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHH
Confidence 4455443 4456666677888888999888887653 2122221111223455688999999999998877 56677776
Q ss_pred HHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-
Q 010057 400 LLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLG- 477 (519)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g- 477 (519)
--+...-..|+..+|++-+....+. ..|...|.-+...|...|++++|.-.++++.-.. |.++..+..+...+.-.|
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhh
Confidence 6666677777777887777665554 4678899999999999999999999999988662 334555556666654444
Q ss_pred --ChhHHHHHHHHhcccCcc
Q 010057 478 --RVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 478 --~~~~a~~~~~~~~~~~~~ 495 (519)
+.+-|.++|++..++.|.
T Consensus 204 ~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 204 AENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHHHHHHHHHHhChH
Confidence 456688889888888773
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00044 Score=56.33 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 010057 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK 186 (519)
Q Consensus 152 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 186 (519)
-+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 34456666666666666666666666666655544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00014 Score=55.53 Aligned_cols=65 Identities=17% Similarity=0.122 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRKGI--HPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
.+..+..++.+.|++++|++.|+.+....- +.....+..+..++.+.|++++|...++++.+..|
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 344455556666666666666666554410 01123344555555666666666666666555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00011 Score=53.28 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=64.3
Q ss_pred HHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 010057 400 LLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGR 478 (519)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~ 478 (519)
.+...+...|++++|...++.+.+..| +...+..+...+...|++++|.+.+++..+.. +.+..++..+...+...|+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 344455556666666666665544322 33566777777888888888888888877763 3344567777778888888
Q ss_pred hhHHHHHHHHhcccCc
Q 010057 479 VSDAEIYRKEKKSIQA 494 (519)
Q Consensus 479 ~~~a~~~~~~~~~~~~ 494 (519)
+++|...+++..+..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 8888888887766554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.016 Score=48.57 Aligned_cols=189 Identities=14% Similarity=0.094 Sum_probs=133.3
Q ss_pred CChHHHHHHHHHHhh--cCC-CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhh
Q 010057 44 PPMEKAWLFFNWVSR--SRG-FNHDRFT-YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~--~~~-~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 119 (519)
.+.++..+++..+.. ..| ..++..+ |..++-+....++.+.|...++.+...- +-+..+-..-...+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 466777777776652 223 4566554 6666667778899999999999988763 2233332222334455788999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 120 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
|+++++.+.+.. +.|..++--=+...-..|+.-+|++-+.+..+. +.-|...|.-+-..|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999998875 346777777676777788888888888888875 566899999999999999999999999999887
Q ss_pred cCCCCCHH-HHHHHHHHHHhcC---ChHHHHHHHHHHHHcCC
Q 010057 200 AGVQPDKA-ACNILIEKCCKAG---ETRTIILILRYMKENRL 237 (519)
Q Consensus 200 ~g~~p~~~-~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~ 237 (519)
. .|... .+..+...+.-.| +.+.+.++|....+...
T Consensus 183 ~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 183 I--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred c--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 3 45444 4444555444443 45677788887776544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00069 Score=55.26 Aligned_cols=116 Identities=15% Similarity=0.270 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhc-----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010057 100 DAVTYTSVMHWLSNA-----GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTY 174 (519)
Q Consensus 100 ~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 174 (519)
+..+|..++..|.+. |.++=....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+-.
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~---------- 113 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM---------- 113 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc----------
Confidence 556666666665532 4455555555566666666666666666655443 2211 0111111111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 010057 175 TVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGET-RTIILILRYMKE 234 (519)
Q Consensus 175 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~ 234 (519)
. --.+-+-|++++++|...|+.||..|+..+++.+++.+.. .+..++.-.|.+
T Consensus 114 -----h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 114 -----H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred -----c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 1 1124577999999999999999999999999999887763 334444444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0073 Score=53.95 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=45.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcc-CChhhHHHHHHHHHhC----CCCcC--HHHHHHHHHHHH
Q 010057 299 ILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDH-RRRDGALLAFEYSVKM----DLNLE--RTAYLALIGILI 371 (519)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~ 371 (519)
.|...|+...+-..+..+ ...|-.. |++++|++.|++..+. + .+. ..++..+...+.
T Consensus 103 ~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 103 IYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 344555555555444443 3456666 7888888888876653 2 221 233666777788
Q ss_pred hcCCcchHHHHHHHHHhcC
Q 010057 372 KLNTFPKVAEIVEEMTKAG 390 (519)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~ 390 (519)
+.|++++|.++|++.....
T Consensus 167 ~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTC
T ss_pred HhCCHHHHHHHHHHHHHHh
Confidence 8888888888888877643
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=9.5e-05 Score=49.81 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=57.6
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHhcccCc
Q 010057 428 TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLG-RVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 494 (519)
...|..+...+.+.|++++|+..|++.++.. +-+...|..+..+|...| ++++|.+.+++..+++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5678899999999999999999999999884 445778888888999999 79999999999988776
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0026 Score=48.36 Aligned_cols=98 Identities=12% Similarity=0.080 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECY--PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLP--PNCYTYTVLM 178 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li 178 (519)
++..+...+.+.|++++|.+.|+.+...... .....+..+..++.+.|+++.|.+.|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444444555555555555555555443110 01223444555555555555555555555542100 1123444455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 010057 179 EYLVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~ 200 (519)
.++.+.|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555555555555555555543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0022 Score=56.99 Aligned_cols=129 Identities=15% Similarity=0.223 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHW-LSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKIL 146 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 146 (519)
+|..+++...+.+..+.|..+|.+..+.+. .+..+|...... |...++.+.|..+|+...+. ...+...|...++-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 455566666666666666666666654321 122333333222 12234444566666665544 233455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 147 FLNDRVKEATDVYKEMIQRGLPPNC---YTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 147 ~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
.+.++.+.|..+|+..... +.++. ..|...++.=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666544 22222 2555566655566666666666655554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0022 Score=46.12 Aligned_cols=89 Identities=24% Similarity=0.260 Sum_probs=40.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 221 (519)
+...+...|++++|.+.+++..+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3344444455555555555444431 1122344444444445555555555555444432 1122344444445555555
Q ss_pred hHHHHHHHHHH
Q 010057 222 TRTIILILRYM 232 (519)
Q Consensus 222 ~~~a~~~~~~~ 232 (519)
++.|...+...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=4.4e-05 Score=53.79 Aligned_cols=78 Identities=21% Similarity=0.210 Sum_probs=36.5
Q ss_pred CCcchHHHHhhhCCcCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 010057 409 RRPVPAAKIFSLLPEDQK---CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIY 485 (519)
Q Consensus 409 g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~ 485 (519)
|+++.|+.+++++.+..| +...+-.+..+|.+.|++++|++++++ .+.+ +.+......+..+|.+.|++++|.+.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344444444444433322 223344456666666666666666655 2221 11123333344555666666666666
Q ss_pred HHH
Q 010057 486 RKE 488 (519)
Q Consensus 486 ~~~ 488 (519)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00011 Score=51.81 Aligned_cols=81 Identities=11% Similarity=0.050 Sum_probs=44.7
Q ss_pred cCCcchHHHHHHHHHhcCC-CccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 010057 373 LNTFPKVAEIVEEMTKAGH-SLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIY 451 (519)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 451 (519)
.|+++.|+.+++.+.+... .++...+-.+..+|.+.|++++|..+++.....+.+....-.+..+|.+.|++++|+++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3555666666666655432 113333333566666666666666666652111222334445577788888888888887
Q ss_pred HH
Q 010057 452 KT 453 (519)
Q Consensus 452 ~~ 453 (519)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 65
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00025 Score=47.00 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=42.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 434 LIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 434 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
+...+.+.|++++|++.|++..+.. +-+...+..+..++...|++++|..+++++.+..|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4456777788888888888877764 234666667777777788888888888777766664
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0095 Score=48.75 Aligned_cols=90 Identities=9% Similarity=-0.020 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINID--AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYM 143 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 143 (519)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++...... -+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 34566666677777888888888877776433222 35677777777778888888887777766521 1345555666
Q ss_pred HHHHhcCCHHHHH
Q 010057 144 KILFLNDRVKEAT 156 (519)
Q Consensus 144 ~~~~~~~~~~~a~ 156 (519)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 6666666644433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0022 Score=57.29 Aligned_cols=184 Identities=15% Similarity=0.057 Sum_probs=104.4
Q ss_pred HHHHhccCChhhHHHHHHHHHhCCC---CcC--HHHHHHHHHHHHhcCCcchHHHHHHHHHh----cCCC-ccchhHHHH
Q 010057 332 IEVNCDHRRRDGALLAFEYSVKMDL---NLE--RTAYLALIGILIKLNTFPKVAEIVEEMTK----AGHS-LGVYLGALL 401 (519)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l 401 (519)
...|-..+++++|.+.|.+..+... .+. ...|......|.+. ++++|.+.+....+ .|-. .-...+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445556666666666665533211 111 11244444444333 66677766666543 3311 113345556
Q ss_pred HHHHhcC-CCcchHHHHhhhCCcC---CCC----chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----Ccc-cHH
Q 010057 402 IHRLGSA-RRPVPAAKIFSLLPED---QKC----TATYTALIGVYFSAGSADKALKIYKTMCRKGIHP-----SLG-TFN 467 (519)
Q Consensus 402 ~~~~~~~-g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-t~~ 467 (519)
...|... |++++|.+.|++..+. ..+ ..++..+...+.+.|++++|+++|++....-... +.. .+-
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 6677777 8888888888765432 111 3456778888899999999999999887653221 111 122
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCcccccccccchHHHHhhhhccCC
Q 010057 468 VLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKICDLLYGGD 516 (519)
Q Consensus 468 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 516 (519)
..+-++...|+...|.+.+++..+..|.........+..-|......||
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D 249 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGD 249 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 2333556778999999999999888887766655555555544444444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.052 Score=47.04 Aligned_cols=155 Identities=11% Similarity=0.078 Sum_probs=88.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh----
Q 010057 76 FGEAKRISSMKYVFELMQEKGINIDAVTY---TSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL---- 148 (519)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 148 (519)
+.+.|++++|.+.|+.+...-..+ .... -.+..++.+.+++++|...|++..+.-..-....|...+.+.+.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcc
Confidence 345666666666666666543221 1221 23445556666666666666666655221112233333333221
Q ss_pred -------------cCC---HHHHHHHHHHHHHCCCCCCHHH------------------HHHHHHHHHHcCCHHHHHHHH
Q 010057 149 -------------NDR---VKEATDVYKEMIQRGLPPNCYT------------------YTVLMEYLVRAGKYEEALEIF 194 (519)
Q Consensus 149 -------------~~~---~~~a~~~~~~m~~~g~~p~~~~------------------~~~li~~~~~~~~~~~a~~~~ 194 (519)
..| ..+|.+.|+++++. -|++.- --.+.+.|.+.|.+..|..-+
T Consensus 121 ~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~ 198 (243)
T PRK10866 121 DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRV 198 (243)
T ss_pred hhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 011 23444555555543 233211 113455688889999999999
Q ss_pred HHHHHc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010057 195 SKMQEA--GVQPDKAACNILIEKCCKAGETRTIILILRYMK 233 (519)
Q Consensus 195 ~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 233 (519)
+.+.+. +.+........++.+|...|..+.|......+.
T Consensus 199 ~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 199 EQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 998875 444455577788899999999999988776554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0051 Score=54.71 Aligned_cols=131 Identities=15% Similarity=0.323 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010057 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI-LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180 (519)
Q Consensus 102 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 180 (519)
.+|..+|+..-+.+..+.|..+|.+.++.+ ..+...|-..... |...++.+.|.++|+...+. +..+...|..-+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578999999999999999999999998653 2234444444444 33367778899999999876 56678889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 181 LVRAGKYEEALEIFSKMQEAGVQPDK---AACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 181 ~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
+.+.++.+.|..+|+..... +.++. ..|...++-=.+.|+++.+.++.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999865 33322 48999999999999999999999888774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00084 Score=52.19 Aligned_cols=88 Identities=15% Similarity=-0.033 Sum_probs=57.1
Q ss_pred HhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHH
Q 010057 405 LGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAE 483 (519)
Q Consensus 405 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~ 483 (519)
+...|++++|.++|+.+....| +..-|-.|..++-..|++++|+..|....... +-|+..+-.+..++...|+.+.|+
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHH
Confidence 4455666666666665544333 34556666667777777777777777777665 345666667777777777777777
Q ss_pred HHHHHhcccC
Q 010057 484 IYRKEKKSIQ 493 (519)
Q Consensus 484 ~~~~~~~~~~ 493 (519)
+.|+..++..
T Consensus 124 ~aF~~Ai~~~ 133 (157)
T PRK15363 124 KALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHh
Confidence 7777666654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0035 Score=60.59 Aligned_cols=138 Identities=14% Similarity=0.022 Sum_probs=88.7
Q ss_pred CCCcCHHHHHHHHHHHHhcC-----CcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCC--------CcchHHHHhhhC
Q 010057 355 DLNLERTAYLALIGILIKLN-----TFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSAR--------RPVPAAKIFSLL 421 (519)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~ 421 (519)
..+.+...|...+++..... +...|..+|++..+.. +-....+..+..++.... +...+.+..++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34556666777777654432 2556777777777754 222334443333332211 122333333332
Q ss_pred Cc---CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 422 PE---DQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 422 ~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.. .+.++..|..+...+...|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++...++|.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 22 23345677777777777899999999999988884 67788888888899999999999999988877664
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.044 Score=46.19 Aligned_cols=141 Identities=12% Similarity=0.117 Sum_probs=103.8
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHH----
Q 010057 327 VISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLI---- 402 (519)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 402 (519)
+.+.+++.+...|.+.-.+..+.+.++...+.++.....+.+.-.+.|+.+.|...|++..+..-..+....+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4555666666677788888888888887767788888899999999999999999999887643344444444433
Q ss_pred -HHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 010057 403 -HRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVL 469 (519)
Q Consensus 403 -~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 469 (519)
..|.-.+++.+|.+.+++++..+ .|+...|.=.-+..-.|+..+|++..+.|... .|.+.+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 33666788999999999888764 45555555555555578999999999999987 5666555543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0069 Score=49.35 Aligned_cols=95 Identities=19% Similarity=0.088 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010057 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYP--TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178 (519)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 178 (519)
...|..+...+...|++++|...|++.......| ...+|..+...+...|++++|...+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3455556666666677777777777665442221 12356666667777777777777777666541 22233444444
Q ss_pred HHHH-------HcCCHHHHHHHHHH
Q 010057 179 EYLV-------RAGKYEEALEIFSK 196 (519)
Q Consensus 179 ~~~~-------~~~~~~~a~~~~~~ 196 (519)
..+. ..|+++.|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 4444 55565555444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.002 Score=59.55 Aligned_cols=101 Identities=10% Similarity=-0.068 Sum_probs=57.9
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHH
Q 010057 370 LIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKAL 448 (519)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 448 (519)
+...|+++.|++.|..+++.. +.+...+..+..+|...|++++|...++++....| +...|..+..+|...|++++|+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 334455555555555555443 23344444555555555555555555555544433 3556777777777778888888
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHH
Q 010057 449 KIYKTMCRKGIHPSLGTFNVLLAGL 473 (519)
Q Consensus 449 ~~~~~m~~~g~~p~~~t~~~l~~~~ 473 (519)
..|++.++. .|+...+...+..|
T Consensus 91 ~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 91 AALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHH
Confidence 887777765 45554444444333
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.12 Score=47.35 Aligned_cols=420 Identities=9% Similarity=0.126 Sum_probs=208.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
+.|..+|-.||..+...+..++..+++++|..- ++.=...|..-|++=....++..+..+|.+...... +...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHH
Confidence 667888999999999999999999999999863 233345788788877778899999999999887744 45566666
Q ss_pred HHHHHhcCCH------HHHHHHHHHHHH-CCCCCCHH-HHHHHH---HHHHHcCC------HHHHHHHHHHHHHcCCCC-
Q 010057 143 MKILFLNDRV------KEATDVYKEMIQ-RGLPPNCY-TYTVLM---EYLVRAGK------YEEALEIFSKMQEAGVQP- 204 (519)
Q Consensus 143 i~~~~~~~~~------~~a~~~~~~m~~-~g~~p~~~-~~~~li---~~~~~~~~------~~~a~~~~~~m~~~g~~p- 204 (519)
+.---+.+.. ....+.|+-... .++.|-.. .|+..+ ...-..|. ++.....|.++...-+.-
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 5544333211 112233333332 45666544 333333 22223333 445555666665531110
Q ss_pred -----CHHHHHHHHH-HHHh--cCC----hHHHHHHHHHHHH--cCCccCHHHHHHHHHHHhhcCchhH------HHhhh
Q 010057 205 -----DKAACNILIE-KCCK--AGE----TRTIILILRYMKE--NRLALRYPVFKEALQTFKVADENDS------LLWQV 264 (519)
Q Consensus 205 -----~~~~~~~li~-~~~~--~g~----~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~ 264 (519)
|-..|..=++ +-++ .|+ +-.|...++++.. .|...-.++.. +.+.+..+... +-|+.
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~---Rt~nK~~r~s~S~WlNwIkwE~ 272 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINL---RTANKAARTSDSNWLNWIKWEM 272 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhh---hhhccccccccchhhhHhhHhh
Confidence 1111111111 1111 121 3345555555443 23322111111 00111111000 00110
Q ss_pred CCCCCcc-cccchhh---hhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCC
Q 010057 265 HPQFSPE-FISDNDA---VEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRR 340 (519)
Q Consensus 265 ~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 340 (519)
.-..... ....... +.-...+......++..-...+...+|-+.|......-.. ..|.... -+-..|.-.++
T Consensus 273 en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~spsL~~--~lse~yel~nd 348 (660)
T COG5107 273 ENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPSLTM--FLSEYYELVND 348 (660)
T ss_pred cCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCchhe--eHHHHHhhccc
Confidence 0000000 0000000 1111111112222222222333344444444444332111 1111000 01111111112
Q ss_pred hhhHHHHHHHHHh--------------CCC---------------CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcC-
Q 010057 341 RDGALLAFEYSVK--------------MDL---------------NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAG- 390 (519)
Q Consensus 341 ~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 390 (519)
-+.....|+.... .+. .--...|...++...+..-++.|..+|..+.+.|
T Consensus 349 ~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~ 428 (660)
T COG5107 349 EEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI 428 (660)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Confidence 2222222211100 000 0111346667777777788889999999999888
Q ss_pred CCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--cccHH
Q 010057 391 HSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATY-TALIGVYFSAGSADKALKIYKTMCRKGIHPS--LGTFN 467 (519)
Q Consensus 391 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~ 467 (519)
..++++++++++.-++ .|+..-|.++|+.-...-||...| +..+..+...++-..|..+|+...+. +..+ ...|.
T Consensus 429 ~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~ 506 (660)
T COG5107 429 VGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYD 506 (660)
T ss_pred CCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHH
Confidence 5678888888888765 577888888988655544554444 56677777788888888888865544 2222 45677
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 468 VLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 468 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
.++.-=..-|+...+..+-+.+.++-|
T Consensus 507 kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 507 KMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 777666777777666555555544433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.22 Score=49.73 Aligned_cols=190 Identities=15% Similarity=0.159 Sum_probs=127.7
Q ss_pred HHhhhccCChhHHHHHHHhC-CCCCCHHHHHHHHhc----CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCh
Q 010057 8 VYKILKYSTWDSAQDLLKNL-PIKWDSYTVNQVLKT----HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRI 82 (519)
Q Consensus 8 i~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~ll~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 82 (519)
...+.|.|+.++|..+++.. +.+++...-...+.. .++.++|..+|+...+. -|+......+..+|.+.+++
T Consensus 50 aLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK---YPSEELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHH
Confidence 34578999999999999988 444443333333333 38999999999988643 67788888888999999888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhhHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCC
Q 010057 83 SSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD----------VDGAVNIWEEMKLKE-CYPTIVSYTAYMKILFLNDR 151 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~ 151 (519)
.+-.+.--+|-+. ++-+...+=++++....... ..-|.+.++.+.+.+ -.-+..-.......+...|+
T Consensus 127 k~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k 205 (932)
T KOG2053|consen 127 KKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGK 205 (932)
T ss_pred HHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhccc
Confidence 7766555555443 22234444455555544321 234666777776653 22223333444455667889
Q ss_pred HHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010057 152 VKEATDVY-KEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG 201 (519)
Q Consensus 152 ~~~a~~~~-~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 201 (519)
+++|++++ ....+.-..-+...-+.-+..+...++|.+..++-.++...|
T Consensus 206 ~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 206 YQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 99999999 444444344455666677888899999999999999998875
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0018 Score=55.41 Aligned_cols=127 Identities=11% Similarity=0.014 Sum_probs=83.9
Q ss_pred HHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcch
Q 010057 334 VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVP 413 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (519)
-+.+.+++.+|+..|.+.++.. +-|.+-|..-..+|.+.|.++.|++-.+..+..+ +.....|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 4566788888888888888764 3455667777888888888888888777777654 3455677778888888888888
Q ss_pred HHHHhhhCCcCCCCchhHH-HHHHHHHhcCCHH---HHHHHHHHHHHCCCCCC
Q 010057 414 AAKIFSLLPEDQKCTATYT-ALIGVYFSAGSAD---KALKIYKTMCRKGIHPS 462 (519)
Q Consensus 414 A~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~ 462 (519)
|++.|++..+..|+-.+|- .|-.+=-+.+... .+...++.....|..||
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd 220 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPD 220 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCcc
Confidence 8888888777766555543 3333333333333 33444444444454444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0076 Score=49.11 Aligned_cols=115 Identities=7% Similarity=-0.068 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhhHHHHH
Q 010057 47 EKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINI--DAVTYTSVMHWLSNAGDVDGAVNIW 124 (519)
Q Consensus 47 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~ 124 (519)
..+...+..+.+..+-......|..+...+...|++++|...|+........+ ...+|..+...+...|+.++|+..+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444444443333333345667788888888999999999999987653322 2357888889999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHH-------hcCCHHHHHHHHHHH
Q 010057 125 EEMKLKECYPTIVSYTAYMKILF-------LNDRVKEATDVYKEM 162 (519)
Q Consensus 125 ~~m~~~~~~p~~~~~~~li~~~~-------~~~~~~~a~~~~~~m 162 (519)
++..... +....+++.+...+. ..|+++.|...+++.
T Consensus 96 ~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 96 FQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 9987652 223455666666666 677777666555543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.013 Score=54.25 Aligned_cols=89 Identities=13% Similarity=0.041 Sum_probs=52.8
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 010057 109 HWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYE 188 (519)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 188 (519)
..+...|+++.|++.|++..+.... +...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 3344556666666666666654321 44555566666666666666666666666542 224455666666666666666
Q ss_pred HHHHHHHHHHH
Q 010057 189 EALEIFSKMQE 199 (519)
Q Consensus 189 ~a~~~~~~m~~ 199 (519)
+|...|+...+
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 66666666665
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0094 Score=46.51 Aligned_cols=88 Identities=11% Similarity=0.020 Sum_probs=44.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 010057 75 IFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKE 154 (519)
Q Consensus 75 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 154 (519)
.+...|++++|.++|+.+...... +..-|-.|-.++-..|++++|+..|.......+ -|..++-.+..++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHH
Confidence 334455555555555555554322 333444444455555555555555555554432 244455555555555555555
Q ss_pred HHHHHHHHHH
Q 010057 155 ATDVYKEMIQ 164 (519)
Q Consensus 155 a~~~~~~m~~ 164 (519)
|.+.|+..+.
T Consensus 122 A~~aF~~Ai~ 131 (157)
T PRK15363 122 AIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.044 Score=47.50 Aligned_cols=152 Identities=7% Similarity=0.048 Sum_probs=100.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTY---TTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN--A---- 114 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~---- 114 (519)
|++++|++.|+.+.... +-+...- -.+..++.+.++++.|...+++..+....-...-|...+.+.+. .
T Consensus 46 g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~ 123 (243)
T PRK10866 46 GNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSA 123 (243)
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhh
Confidence 89999999999987543 2222322 34567788899999999999999876433223334444444331 1
Q ss_pred -----------CC---hhhHHHHHHHHHHCCCCCChhh------H------------HHHHHHHHhcCCHHHHHHHHHHH
Q 010057 115 -----------GD---VDGAVNIWEEMKLKECYPTIVS------Y------------TAYMKILFLNDRVKEATDVYKEM 162 (519)
Q Consensus 115 -----------g~---~~~a~~~~~~m~~~~~~p~~~~------~------------~~li~~~~~~~~~~~a~~~~~~m 162 (519)
.| ...|...|+++.+. -|++.- . -.+.+-|.+.|.+..|..-++.+
T Consensus 124 ~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v 201 (243)
T PRK10866 124 LQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQM 201 (243)
T ss_pred hhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 12 23566777777665 333321 1 12234588899999999999999
Q ss_pred HHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 163 IQR--GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 163 ~~~--g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
.+. +.+........++.+|...|..++|.++...+..
T Consensus 202 ~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 202 LRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 985 3333455677888999999999999988776543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.024 Score=46.36 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010057 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT--IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178 (519)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 178 (519)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44577777888888999999999998876533322 3577888888899999999999998888752 22455666677
Q ss_pred HHHHHcCCH
Q 010057 179 EYLVRAGKY 187 (519)
Q Consensus 179 ~~~~~~~~~ 187 (519)
..+...|+.
T Consensus 114 ~~~~~~g~~ 122 (172)
T PRK02603 114 VIYHKRGEK 122 (172)
T ss_pred HHHHHcCCh
Confidence 777776664
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.22 Score=48.28 Aligned_cols=149 Identities=9% Similarity=0.052 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCC--------CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQE-KGINI--------DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECY 133 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 133 (519)
.|.+..|..+.......-.++-|+..|-+... .|++. +...-.+=+. +--|++++|.++|-+|.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchh---
Confidence 67788888888777777777777777654433 12210 0011111111 2247788888888777655
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 010057 134 PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGL--PPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNI 211 (519)
Q Consensus 134 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 211 (519)
...|..+.+.|++-.+.++++.--. +. ..-...|+.+...++....|++|.+.|...... ..
T Consensus 764 ------DLAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 764 ------DLAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred ------hhhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 3345666777777776666543111 00 011346777777777777788887777654321 23
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 010057 212 LIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 212 li~~~~~~g~~~~a~~~~~~~ 232 (519)
.+.++.+..++++.+.+.+.+
T Consensus 828 ~~ecly~le~f~~LE~la~~L 848 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL 848 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc
Confidence 455555555555555444433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00096 Score=57.06 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=86.1
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhcCCHHHH
Q 010057 369 ILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKA 447 (519)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A 447 (519)
-+.+.+++.+|+..|...++.. +.|+..|..-..+|.+.|.++.|++--+......|. ..+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4677899999999999999875 567778888899999999999999988887776554 56899999999999999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHH
Q 010057 448 LKIYKTMCRKGIHPSLGTFNVLLAGL 473 (519)
Q Consensus 448 ~~~~~~m~~~g~~p~~~t~~~l~~~~ 473 (519)
++.|++.++. .|+..+|..=+...
T Consensus 169 ~~aykKaLel--dP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHhhhcc--CCCcHHHHHHHHHH
Confidence 9999998866 78888877666544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.058 Score=42.98 Aligned_cols=126 Identities=12% Similarity=0.029 Sum_probs=91.3
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC---CchhHH
Q 010057 356 LNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK---CTATYT 432 (519)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~ 432 (519)
.-|+...--.|..+..+.|+..+|...|.+...--+..|..+.-.+.++....+++..|...++.+.+.+| .+.+--
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 45666666677788888888888888888887766667777777777887888888888888887766533 244556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHH
Q 010057 433 ALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAE 483 (519)
Q Consensus 433 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~ 483 (519)
.+...|...|++.+|..-|+..... -|++..-.....-+.+.|..++|.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 6777788888888888888888876 566665555555566677655543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.031 Score=54.24 Aligned_cols=67 Identities=16% Similarity=0.058 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 170 NCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 170 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
+...|..+.-.+...|++++|...+++.... .|+...|..+...+...|+.++|.+.+++....+..
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4455666655555667777777777777664 356667777777777777777777777766655443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.29 Score=47.92 Aligned_cols=115 Identities=6% Similarity=-0.014 Sum_probs=80.2
Q ss_pred CccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHH
Q 010057 322 QLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALL 401 (519)
Q Consensus 322 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 401 (519)
.....+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++.+++-+.... +.-|.-.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhH
Confidence 3344445555556666788888877766654 57777777778888888888876655544431 3345557
Q ss_pred HHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 010057 402 IHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKT 453 (519)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 453 (519)
+.+|.+.|+.++|.+.+.+.... .-...+|.+.|++.+|.++--+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l-------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL-------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh-------HHHHHHHHHhccHHHHHHHHHH
Confidence 78888889999998888777653 2577788888888888776543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.022 Score=54.72 Aligned_cols=178 Identities=15% Similarity=0.081 Sum_probs=121.2
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHhCC-CCcCH-----HHHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCccchh
Q 010057 328 ISTIIEVNCDHRRRDGALLAFEYSVKMD-LNLER-----TAYLALIGILIK----LNTFPKVAEIVEEMTKAGHSLGVYL 397 (519)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 397 (519)
+..+++...-.|+-+.+++.+....+.+ +.-.. ..|..++..+.. ..+.+.|.+++..+.+.- |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHH
Confidence 4556666667788888888888776643 22111 124444444443 356678899999998763 55555
Q ss_pred HHH-HHHHHhcCCCcchHHHHhhhCCcCC-----CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 010057 398 GAL-LIHRLGSARRPVPAAKIFSLLPEDQ-----KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLA 471 (519)
Q Consensus 398 ~~~-l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~ 471 (519)
+.. -.+.+...|++++|.+.|+...... -....+--+...+.-.++|++|.+.|..+.+.. ..+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 433 3455778899999999999765431 224566778888999999999999999999874 456666766666
Q ss_pred HH-HhcCCh-------hHHHHHHHHhcccCcccccccccchHHHHh
Q 010057 472 GL-EKLGRV-------SDAEIYRKEKKSIQADALSKDAVPMEEKIC 509 (519)
Q Consensus 472 ~~-~~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~ 509 (519)
+| ...|+. ++|.++++++..+...... ...+++.|+.
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~g-k~lp~E~Fv~ 392 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAG-KSLPLEKFVI 392 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhcc-CCCChHHHHH
Confidence 55 778888 8899999888776654333 3344455544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0018 Score=43.26 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=8.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHH
Q 010057 104 YTSVMHWLSNAGDVDGAVNIWEEM 127 (519)
Q Consensus 104 ~~~li~~~~~~g~~~~a~~~~~~m 127 (519)
+..+..+|.+.|++++|..+++++
T Consensus 28 ~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 28 RLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333333
|
... |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.24 Score=46.53 Aligned_cols=420 Identities=11% Similarity=0.078 Sum_probs=198.1
Q ss_pred hhhccCChhHHHHHHHhC-CCCCC-HHHHHHHHhc---CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc-CCh-
Q 010057 10 KILKYSTWDSAQDLLKNL-PIKWD-SYTVNQVLKT---HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEA-KRI- 82 (519)
Q Consensus 10 ~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~ll~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~- 82 (519)
..+....+++++..++++ +.-|+ +..|..-|.. ..+++....+|.+... . ..+...|..-|..-.+. ++.
T Consensus 28 re~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv-k--vLnlDLW~lYl~YVR~~~~~~~ 104 (656)
T KOG1914|consen 28 REAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV-K--VLNLDLWKLYLSYVRETKGKLF 104 (656)
T ss_pred HHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH-H--HhhHhHHHHHHHHHHHHccCcc
Confidence 344555889999999998 44444 4555555543 3788888889987753 2 45677777777655432 222
Q ss_pred ---hHHHHHHHHH-HhCCCCCC-HHHHHHHHH---------HHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH------
Q 010057 83 ---SSMKYVFELM-QEKGINID-AVTYTSVMH---------WLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY------ 142 (519)
Q Consensus 83 ---~~a~~~~~~m-~~~~~~~~-~~~~~~li~---------~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l------ 142 (519)
+...+.|+-. .+.|+.+- ...|+..+. -+..+.+.+...++++++..--+.-=...|+-.
T Consensus 105 ~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~ 184 (656)
T KOG1914|consen 105 GYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQE 184 (656)
T ss_pred hHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHH
Confidence 2334444443 34454332 234555443 345566788888888888654221111222211
Q ss_pred HHH-------HHhcCCHHHHHHHHHHHHH--CCCCCCHH---------------HHHHHHHHHHHcC------C--HHHH
Q 010057 143 MKI-------LFLNDRVKEATDVYKEMIQ--RGLPPNCY---------------TYTVLMEYLVRAG------K--YEEA 190 (519)
Q Consensus 143 i~~-------~~~~~~~~~a~~~~~~m~~--~g~~p~~~---------------~~~~li~~~~~~~------~--~~~a 190 (519)
|+- --+...+..|.++++++.. +|+..+.. .|-.+|..=-..+ . -...
T Consensus 185 IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv 264 (656)
T KOG1914|consen 185 INIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRV 264 (656)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHH
Confidence 111 1134456677777777654 34322211 2444443222111 0 1122
Q ss_pred HHHHHHHH-HcCCCCCHHHH-HHHH----HHHHhcCC-------hHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCch
Q 010057 191 LEIFSKMQ-EAGVQPDKAAC-NILI----EKCCKAGE-------TRTIILILRYMKENRLALRYPVFKEALQTFKVADEN 257 (519)
Q Consensus 191 ~~~~~~m~-~~g~~p~~~~~-~~li----~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 257 (519)
.-++++.. -.+..|+.... ...+ +.+...|+ .+++..+++.....-..-+...+ .++..+.....
T Consensus 265 ~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly-~~~a~~eE~~~- 342 (656)
T KOG1914|consen 265 MYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY-FALADYEESRY- 342 (656)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHhc-
Confidence 22333332 22444443311 1111 12222232 34566666654443222111111 11111100000
Q ss_pred hHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Q 010057 258 DSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCD 337 (519)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (519)
..+..+.....++++......--..+|...++.--+
T Consensus 343 --------------------------------------------~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR 378 (656)
T KOG1914|consen 343 --------------------------------------------DDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRR 378 (656)
T ss_pred --------------------------------------------ccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHH
Confidence 000122222333333222111222334444444444
Q ss_pred cCChhhHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHH
Q 010057 338 HRRRDGALLAFEYSVKMDLNL-ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAK 416 (519)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 416 (519)
..-+..|..+|.++++.+..+ ....+++++.-+| .++...|.++|+.=++. +..++.-....++.+...++-..|..
T Consensus 379 ~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~ 456 (656)
T KOG1914|consen 379 AEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARA 456 (656)
T ss_pred hhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHH
Confidence 455555556666665555444 3333444444333 34555555665554432 12333333445555555566666666
Q ss_pred HhhhCCcC--CC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCcccHHHHHHHHHhcCChh
Q 010057 417 IFSLLPED--QK--CTATYTALIGVYFSAGSADKALKIYKTMCRK---GIHPSLGTFNVLLAGLEKLGRVS 480 (519)
Q Consensus 417 ~~~~~~~~--~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~l~~~~~~~g~~~ 480 (519)
+|++.... ++ ....|..++.--..-|+...++++-+++... ...|...+-..+++-|.-.+.+.
T Consensus 457 LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 457 LFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 66655443 22 2456777777777778888888877776544 12233344455566665555443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0016 Score=44.29 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=44.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 436 GVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
..|.+.+++++|+++++++.+.+ +.++..+......+.+.|++++|.+.+++..+..|+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45777888888888888888773 445666666777778888888888888888777664
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00099 Score=44.59 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=38.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 439 FSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.+.|++++|+++|+++.... +-+...+..+..+|.+.|++++|.++++++....|+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 45677888888888877662 335566666777778888888888888777666554
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.18 Score=48.32 Aligned_cols=93 Identities=13% Similarity=0.154 Sum_probs=55.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHH---------HHHHHCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCC
Q 010057 134 PTIVSYTAYMKILFLNDRVKEATDVY---------KEMIQRGLPPNCYTYTVLMEYLVRAGKY--EEALEIFSKMQEAGV 202 (519)
Q Consensus 134 p~~~~~~~li~~~~~~~~~~~a~~~~---------~~m~~~g~~p~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~g~ 202 (519)
|....+.+-+..|...|.+++|.++- +.+-.. ..+...+++-=.+|.+..+. -+.+.-++++++.|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 44555666666777788887776541 111111 12333455555666666553 344445566777787
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 203 QPDKAACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 203 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
.|+.... ...|+-.|.+.+|-++|.+
T Consensus 632 ~P~~iLl---A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 632 TPNDLLL---ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred CchHHHH---HHHHHhhhhHHHHHHHHHH
Confidence 7876543 3456777888888888764
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0011 Score=43.82 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=45.1
Q ss_pred HHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 401 LIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
+...+...|++++|.+.|+.+.+..| +...|..+..++.+.|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556777888888888887776644 5778888999999999999999999998876
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0035 Score=54.71 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhc
Q 010057 363 YLALIGILIKLNTFPKVAEIVEEMTKA 389 (519)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 389 (519)
|...+....+.|++++|...|+.+++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~ 172 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK 172 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 555554445556666666666666654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.016 Score=45.85 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 127 (519)
...++..+...|+++.|..+...+.....- +...|..+|.+|...|+...|.+.|+++
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444444555555555555555544221 4445555555555555555555555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.029 Score=48.55 Aligned_cols=112 Identities=10% Similarity=-0.031 Sum_probs=79.3
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCC---CcchHHHHhhhCCcCCC-CchhHH
Q 010057 357 NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSAR---RPVPAAKIFSLLPEDQK-CTATYT 432 (519)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~-~~~~~~ 432 (519)
+-|...|..|...|...|+.+.|..-|....+.. ++++..+..+..++.... ...++..+|+++...+| |+.+-.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4566778888888888888888888888888753 355566666666543322 25678888887776544 566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 010057 433 ALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLA 471 (519)
Q Consensus 433 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~ 471 (519)
.|...+...|++.+|...|+.|.+.. |....+..++.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 77888888888888888888888773 44444444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.27 Score=44.50 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=21.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010057 178 MEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIIL 227 (519)
Q Consensus 178 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 227 (519)
|.-+...|+...|.++-.+.. .|+..-|-.-+++++..++|++..+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~ 229 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEK 229 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHH
Confidence 344444444444444433331 1344445555555555555544444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.094 Score=39.38 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=7.8
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 010057 145 ILFLNDRVKEATDVYKEMI 163 (519)
Q Consensus 145 ~~~~~~~~~~a~~~~~~m~ 163 (519)
.+...|++++|+.++++..
T Consensus 47 tlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 47 TLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.037 Score=43.84 Aligned_cols=69 Identities=20% Similarity=0.385 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 010057 139 YTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE-----AGVQPDKAA 208 (519)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~ 208 (519)
...++..+...|++++|.++.+.+.... +.|...|..+|.+|...|+...|.++|+.+.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555556677777777777666642 33556667777777777777777777766532 366666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.086 Score=44.44 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=29.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHH
Q 010057 177 LMEYLVRAGKYEEALEIFSKMQEA--GVQPDKAACNILIEKCCKAGETRTI 225 (519)
Q Consensus 177 li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a 225 (519)
+...|.+.|.+..|..-++.+.+. +..........++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 456677778888888888777765 1111223455667777777776644
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.1 Score=39.23 Aligned_cols=105 Identities=21% Similarity=0.241 Sum_probs=77.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQRGLPPN--CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPD----KAACNILIEK 215 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~ 215 (519)
+..++-..|+.++|..+|++....|...+ ...+-.+.+.+...|++++|..+++...... |+ ......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 44567788999999999999999887655 3466778889999999999999999988652 33 2222333446
Q ss_pred HHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHh
Q 010057 216 CCKAGETRTIILILRYMKENRLALRYPVFKEALQTFK 252 (519)
Q Consensus 216 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 252 (519)
+...|+.++|...+-.... ++...|...+..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 7788999999998876554 23336666665553
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.036 Score=42.09 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCC
Q 010057 165 RGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA-GVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 165 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~ 221 (519)
....|+..+..+++.+|+..+++..|.++.+...+. +++.+..+|..|++-+...-+
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 346778888888888888888888888888887765 677777788888776554433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.25 Score=47.41 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCch-----------h
Q 010057 362 AYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTA-----------T 430 (519)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~ 430 (519)
+...+..-+.+...+..|.++|..|-+. ..+++.....+++.+|..+-+..++..||+. -
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence 3444444444555566666666665332 2355556666777777777766666544432 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 431 YTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 431 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
|.-.-.+|.+.|+-.+|..+++++...
T Consensus 820 FeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 820 FEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 334456788888889999998887654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.43 Score=43.67 Aligned_cols=170 Identities=16% Similarity=0.147 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChhhHHHHHHHHHHCCCCCChhhHH
Q 010057 67 FTYTTMLDIFGEAKRISSMKYVFELMQEKG---INIDAVTYTSVMHWLSN---AGDVDGAVNIWEEMKLKECYPTIVSYT 140 (519)
Q Consensus 67 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~ 140 (519)
.+...++-.|....+++...++.+.+.... +.-+..+-....-++.+ .|+.++|++++..+....-.++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334455556888999999999999998752 22133333445556667 899999999999976666677888998
Q ss_pred HHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-H---HHHHHHH---HH-HHHcC--
Q 010057 141 AYMKILFL---------NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK-Y---EEALEIF---SK-MQEAG-- 201 (519)
Q Consensus 141 ~li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-~---~~a~~~~---~~-m~~~g-- 201 (519)
.+.+.|-. ....++|...|.+--+. .||.++=-.+...+...|. . .+..++- .. ..+.|
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 88876643 22467788888766553 4555432222223333332 2 2222322 22 11223
Q ss_pred -CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 202 -VQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 202 -~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
-..|-..+.+++.++.-.|+.++|.+..+.|.+....
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 3456678889999999999999999999999987533
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0021 Score=44.42 Aligned_cols=65 Identities=31% Similarity=0.403 Sum_probs=50.8
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-cccHHHHHHHHHhcCChhHHHHHHHHhccc
Q 010057 428 TATYTALIGVYFSAGSADKALKIYKTMCRK----GI-HPS-LGTFNVLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
..+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+..+|...|++++|++++++..++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 357888999999999999999999988754 21 122 557888888999999999999999987654
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.061 Score=47.06 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHH
Q 010057 137 VSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNC----YTYTVLMEYLVRAGKYEEALEIFSKMQEAG--VQPDKAACN 210 (519)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~ 210 (519)
..|...+..+.+.|++++|...|+.+.+. .|+. ..+..+...|...|++++|...|+.+.+.- -......+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34666666667789999999999999885 3443 467788889999999999999999998641 111234555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 211 ILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 211 ~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
.+..++...|+.+.|..+|+.+.+..+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 5667788899999999999988876543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.039 Score=41.90 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 65 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
|..++..+|.++++.|+.+....+++..= |+.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566777777777777777777665432 21111100 0000 0112245666667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHH
Q 010057 145 ILFLNDRVKEATDVYKEMIQ-RGLPPNCYTYTVLMEYLVR 183 (519)
Q Consensus 145 ~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~ 183 (519)
+|+.++++..|+++++...+ .+++.+..+|..|+.-...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 77777777777777666554 3556566666666664443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.54 Score=42.57 Aligned_cols=79 Identities=10% Similarity=0.106 Sum_probs=34.4
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHH
Q 010057 358 LERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGV 437 (519)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~ 437 (519)
|+..-|-..+.+++..++|++..++... .-.+.-|-..+.+|.+.|+..+|..++.+++ +..-+..
T Consensus 206 ~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~~--------~~~rv~~ 271 (319)
T PF04840_consen 206 PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKIP--------DEERVEM 271 (319)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhCC--------hHHHHHH
Confidence 4444444455555555555444433211 1122334444444444555555544444421 1334444
Q ss_pred HHhcCCHHHHHHH
Q 010057 438 YFSAGSADKALKI 450 (519)
Q Consensus 438 ~~~~g~~~~A~~~ 450 (519)
|.+.|++.+|.+.
T Consensus 272 y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 272 YLKCGDYKEAAQE 284 (319)
T ss_pred HHHCCCHHHHHHH
Confidence 4555555554443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.11 Score=43.94 Aligned_cols=149 Identities=10% Similarity=0.023 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 83 SSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEM 162 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 162 (519)
+...++|+.=. ..+-+.+++.+.-.|.+.-...++++..+...+.+......|.+.-.+.||.+.|...|++.
T Consensus 166 ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55566664433 24566777777777888888888888887765556777778888888888888888888877
Q ss_pred HHCCCCCCHHHHHHHH-----HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 010057 163 IQRGLPPNCYTYTVLM-----EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237 (519)
Q Consensus 163 ~~~g~~p~~~~~~~li-----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 237 (519)
.+..-..|..+++.++ ..|.-.+++..|...++++....- .|+...|.=.-+..-.|+...|.+.++.|++..+
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 6543344444444433 345556778888888887776532 2444444433334446888888888888887665
Q ss_pred cc
Q 010057 238 AL 239 (519)
Q Consensus 238 ~~ 239 (519)
.+
T Consensus 318 ~~ 319 (366)
T KOG2796|consen 318 RH 319 (366)
T ss_pred cc
Confidence 54
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.1 Score=44.87 Aligned_cols=175 Identities=17% Similarity=0.229 Sum_probs=114.4
Q ss_pred hhhhhHHhhhccCChhHHHHHHHhCCCCCCHHHHHHHHh-------cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 010057 3 DTISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLK-------THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDI 75 (519)
Q Consensus 3 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~-------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 75 (519)
++-..+..+.+..-++-|+.+.+..+.. ......+.. .-|+++.|...|-+-. .-+.| ..+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d--~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~-----s~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLD--EDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEP-----SEVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCCh-----HHHHHH
Confidence 4556777888888899999998877543 333333333 3388999987776543 22233 235566
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 010057 76 FGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 155 (519)
|....+....-.+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+.-. .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 66667777888888889888886 66777889999999999988877776544 2211 11234556666666667776
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
.-+-..... +......++ -..+++++|++++..+.
T Consensus 483 ~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 655444332 333334443 35678889988887663
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.23 Score=43.19 Aligned_cols=99 Identities=13% Similarity=0.148 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010057 100 DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL---NDRVKEATDVYKEMIQRGLPPNCYTYTV 176 (519)
Q Consensus 100 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 176 (519)
|...|-.|-..|...|+.+.|..-|.+..+.. .+|...+..+..++.. .....++.++|+++.... +-|..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 56666666666666666666666666665541 2234444444433322 223456666666666642 124445555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 010057 177 LMEYLVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 177 li~~~~~~~~~~~a~~~~~~m~~~ 200 (519)
|...+...|++.+|...++.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 555666666777777777666664
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.022 Score=38.09 Aligned_cols=61 Identities=25% Similarity=0.212 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 010057 172 YTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAG-ETRTIILILRYMK 233 (519)
Q Consensus 172 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~ 233 (519)
.+|..+...+...|++++|+..|++..+.. +-+...+..+..+|.+.| ++++|.+.++...
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444444555555555554444431 112234444444444444 3445544444433
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.46 Score=40.04 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=34.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHH
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQRGLPPNC----YTYTVLMEYLVRAGKYEEAL 191 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~ 191 (519)
+..-|.+.|.+..|..-++.+.+. -|++ ...-.++.+|.+.|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 456788999999999999999886 3443 34567788888888877544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.042 Score=46.85 Aligned_cols=116 Identities=16% Similarity=0.252 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChh
Q 010057 63 NHDRFTYTTMLDIFGE-----AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIV 137 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 137 (519)
..|-.+|-..+..+.. .+..+-....++.|.+.|+.-|..+|+.|++.+-+..- .|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH
Confidence 4455566666655543 34566677777888888888888888888877644321 11110
Q ss_pred hHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 010057 138 SYTAYMKILFL-NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY-EEALEIFSKMQ 198 (519)
Q Consensus 138 ~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~ 198 (519)
+. ..+.. -.+-+=+.+++++|...|+-||..+-..|++++.+.+.. .+...+.-.|.
T Consensus 128 -fQ---~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 128 -FQ---KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred -HH---HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 11 11111 112234677888888888888888888888888777653 34444444444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.013 Score=39.81 Aligned_cols=62 Identities=11% Similarity=0.003 Sum_probs=44.0
Q ss_pred HHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 010057 403 HRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTF 466 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 466 (519)
..|.+.+++++|.++++.+... +.++..|.....+|.+.|++++|.+.|++..+. .|+....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHH
Confidence 3455666677777777666554 335677788888888888999999888888877 4554443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.48 Score=38.00 Aligned_cols=133 Identities=14% Similarity=0.065 Sum_probs=94.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHH
Q 010057 98 NIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGL-PPNCYTYTV 176 (519)
Q Consensus 98 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ 176 (519)
.|++...-.|..+..+.|+..+|...|++....-.--|....-.+.++....+++..|...++++.+.+. ..++.+-..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 5677777778888889999999999998877654455677777888888888999999999988877431 012334455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 177 LMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 177 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
+.+.+...|..++|..-|+..... -|+...-.-....+++.|+.+++..-+.++
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 677888888998899888888874 455544444445566777666655444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.07 Score=42.01 Aligned_cols=84 Identities=12% Similarity=-0.044 Sum_probs=36.6
Q ss_pred cCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 010057 407 SARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIY 485 (519)
Q Consensus 407 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~ 485 (519)
..|++++|+.+|+-+.-.. .|+.-|..|..+|-..+++++|+..|......+ .-|+..+-....++...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 3444444444444333321 223333444444444455555555554444333 12333333444444555555555555
Q ss_pred HHHhcc
Q 010057 486 RKEKKS 491 (519)
Q Consensus 486 ~~~~~~ 491 (519)
|+...+
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 544433
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.3 Score=42.46 Aligned_cols=365 Identities=10% Similarity=0.035 Sum_probs=193.4
Q ss_pred ChhHHHHHHHhC-CCCCCHHHHHHHHhc----CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh-cCChhHHHHHH
Q 010057 16 TWDSAQDLLKNL-PIKWDSYTVNQVLKT----HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGE-AKRISSMKYVF 89 (519)
Q Consensus 16 ~~~~a~~~~~~~-~~~p~~~~~~~ll~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~ 89 (519)
..+.+..+++.+ +-.|-.+-|-.-.+. .|..+.+..+|++-+ .+++.++..|...+..+.. .|+.+.....|
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv--~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGV--QAIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 334455555555 555666654433332 277788888888775 4567777777776666543 45666777777
Q ss_pred HHHHhC-C--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh---------cCCHHHHHH
Q 010057 90 ELMQEK-G--INIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL---------NDRVKEATD 157 (519)
Q Consensus 90 ~~m~~~-~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---------~~~~~~a~~ 157 (519)
+..+.. | +. +...|-..|..-..++++.....++++..+- ...-|+..-..|.+ ....+++.+
T Consensus 138 e~A~~~vG~dF~-S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~ 212 (577)
T KOG1258|consen 138 ERAKSYVGLDFL-SDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQ 212 (577)
T ss_pred HHHHHhcccchh-ccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHH
Confidence 776652 2 22 3445667777667777788888888877664 22223322222221 112222222
Q ss_pred HHHHHH--------------------HCCCCCCHH--HHHHHHH-------HHHHcCCHHHHHHHHHHHHHc---CCC--
Q 010057 158 VYKEMI--------------------QRGLPPNCY--TYTVLME-------YLVRAGKYEEALEIFSKMQEA---GVQ-- 203 (519)
Q Consensus 158 ~~~~m~--------------------~~g~~p~~~--~~~~li~-------~~~~~~~~~~a~~~~~~m~~~---g~~-- 203 (519)
+-.... ..+-+-+.. ..+.+-. ++............|+.-.+. .+.
T Consensus 213 l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl 292 (577)
T KOG1258|consen 213 LRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPL 292 (577)
T ss_pred HhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcc
Confidence 222111 110011111 1111111 111222223333333333221 122
Q ss_pred --CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhh
Q 010057 204 --PDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEF 281 (519)
Q Consensus 204 --p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (519)
++..+|..-+.--...|+.+.+.-+|+...-. ...|
T Consensus 293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-----cA~Y------------------------------------- 330 (577)
T KOG1258|consen 293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-----CALY------------------------------------- 330 (577)
T ss_pred cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-----Hhhh-------------------------------------
Confidence 24557888888888889998888888765431 1111
Q ss_pred HHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcC
Q 010057 282 VTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKS--IQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE 359 (519)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (519)
..+|-..+......|+...+..++..-.+-. -.|....+.+.+. -..|+.+.|..+++.+.+.- |+
T Consensus 331 --------~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~--e~~~n~~~A~~~lq~i~~e~--pg 398 (577)
T KOG1258|consen 331 --------DEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE--ESNGNFDDAKVILQRIESEY--PG 398 (577)
T ss_pred --------HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH--HhhccHHHHHHHHHHHHhhC--Cc
Confidence 1123333333334466666666665543322 2334444444443 34578999999999887754 44
Q ss_pred HHH-HHHHHHHHHhcCCcchHH---HHHHHHHhcCCCccchhHHHHHHH-----HhcCCCcchHHHHhhhCCcC-CCCch
Q 010057 360 RTA-YLALIGILIKLNTFPKVA---EIVEEMTKAGHSLGVYLGALLIHR-----LGSARRPVPAAKIFSLLPED-QKCTA 429 (519)
Q Consensus 360 ~~~-~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~-~~~~~ 429 (519)
..- -..-+....+.|+.+.+. +++....... -+..+...+.-- +.-+++.+.|..++..+.+. +++..
T Consensus 399 ~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~ 476 (577)
T KOG1258|consen 399 LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKV 476 (577)
T ss_pred hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHH
Confidence 322 223344556777777777 4444433322 222222222222 34467888999999888776 56677
Q ss_pred hHHHHHHHHHhcCC
Q 010057 430 TYTALIGVYFSAGS 443 (519)
Q Consensus 430 ~~~~li~~~~~~g~ 443 (519)
.|..++......+.
T Consensus 477 ~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 477 LYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHhCCc
Confidence 88888887776653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.03 Score=51.75 Aligned_cols=63 Identities=14% Similarity=0.029 Sum_probs=33.4
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc----cHHHHHHHHHhcCChhHHHHHHHHhccc
Q 010057 428 TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLG----TFNVLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
...|+.+..+|.+.|++++|+..|++.++. .|+.. +|..+..+|...|+.++|...+++..++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555555555555555555555555544 33322 3555555555555555555555555544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.14 Score=43.73 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHhc-----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 010057 99 IDAVTYTSVMHWLSNA-----GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYT 173 (519)
Q Consensus 99 ~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 173 (519)
-|..+|-..+..+... +.++-....++.|.+-|+.-|..+|+.||+.+=+-.- .|. ..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HH
Confidence 3666777777666543 4566666667777788888888888888776543221 111 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 010057 174 YTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGET-RTIILILRYMKE 234 (519)
Q Consensus 174 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~ 234 (519)
|....-.|-+ +-+-+++++++|...|+.||-.+-..|++++.+.+-. .+..++.-.|.+
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 2222222222 2345788999999999999999999999999988764 345555555544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.27 Score=44.59 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=38.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhhHHHHHH
Q 010057 74 DIFGEAKRISSMKYVFELMQEKGINIDA----VTYTSVMHWLSNAGDVDGAVNIWE 125 (519)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~ 125 (519)
.-+++.|+......+|+...+.|-. |. .+|..|-++|.-.+++++|++...
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 4567888888888888888887754 43 356667778888888888887643
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.07 E-value=1.1 Score=40.85 Aligned_cols=270 Identities=14% Similarity=0.060 Sum_probs=128.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHH
Q 010057 75 IFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVK 153 (519)
Q Consensus 75 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~ 153 (519)
.+.+..++..|...+....+.... +..-|..-...+...|++++|.-=.+.-.+. .|. .....-.-+++...++..
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHH
Confidence 345566777777777777766443 3444554555555556666655444333322 111 112222333333333333
Q ss_pred HHHHHHH---------------HHHHCCC-CCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--
Q 010057 154 EATDVYK---------------EMIQRGL-PPNCYTYTVLM-EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE-- 214 (519)
Q Consensus 154 ~a~~~~~---------------~m~~~g~-~p~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~-- 214 (519)
+|.+.++ ....... +|.-.+|-.|- .++...++.++|.+.-..+.+.. ....+...++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhccc
Confidence 3333332 1111111 12333343332 35556778888877776666532 1123333333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchh
Q 010057 215 KCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQ 294 (519)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (519)
++...++.+.+...|.+....++. ......+........ .+.
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ldpd--h~~sk~~~~~~k~le------------------------------------~~k 253 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLDPD--HQKSKSASMMPKKLE------------------------------------VKK 253 (486)
T ss_pred ccccccchHHHHHHHhhhhccChh--hhhHHhHhhhHHHHH------------------------------------HHH
Confidence 333457777788777776664432 222111111110000 000
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcC-HHHHHHHHHHH
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIMDK---SIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE-RTAYLALIGIL 370 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 370 (519)
.--....+.|.+..|.+.+...... +++|+...|.....+..+.|+..+|+.--....+.. |. ...|..-..++
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~ 331 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCH 331 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHH
Confidence 1112344666777777766664432 344555556666666666677777666665555322 11 11122333344
Q ss_pred HhcCCcchHHHHHHHHHhcC
Q 010057 371 IKLNTFPKVAEIVEEMTKAG 390 (519)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~ 390 (519)
...++|+.|.+-++...+..
T Consensus 332 l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 44566666666666665543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.88 Score=38.83 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=42.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 176 VLMEYLVRAGKYEEALEIFSKMQEAGVQPDK---AACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 176 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
.+.+.|.+.|.+..|..-+++|.+. .+-+. ..+-.+..+|-..|-.+.|.+.-.-+...-
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 3556788889999999999998876 22222 245556778888888888887766665543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.5 Score=43.30 Aligned_cols=32 Identities=13% Similarity=0.016 Sum_probs=18.9
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 463 LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 463 ~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
...+.+++.++.-.|+.++|.+..+++..+.|
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 33444555566666666666666666665544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.18 Score=37.78 Aligned_cols=115 Identities=10% Similarity=0.065 Sum_probs=57.1
Q ss_pred hhccCChhHHHHHHHhCCCCCCHHHHHHHHhc-------------------------CCChHHHHHHHHHHhhcCCCCCC
Q 010057 11 ILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKT-------------------------HPPMEKAWLFFNWVSRSRGFNHD 65 (519)
Q Consensus 11 ~~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~-------------------------~~~~~~A~~~~~~~~~~~~~~~~ 65 (519)
++-.|..++-.++..+.-.+-+...+|.+|.. ||+..+....+-.+ ..+
T Consensus 12 ~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~------n~~ 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKR------NKL 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHT------T--
T ss_pred HHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHh------cch
Confidence 44567777777777766222344455555432 24444444444332 233
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKEC 132 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 132 (519)
.......+..+.+.|+-+...+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+..+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 444555566666666666666666665542 244556666666666666666666666666666554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.48 Score=43.03 Aligned_cols=130 Identities=15% Similarity=-0.008 Sum_probs=77.2
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHH----HhCCCC-cCHHHHHHHHHHHHhcCCcchHHHHHHHHHh----cCC-Cccch
Q 010057 327 VISTIIEVNCDHRRRDGALLAFEYS----VKMDLN-LERTAYLALIGILIKLNTFPKVAEIVEEMTK----AGH-SLGVY 396 (519)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~ 396 (519)
.|..+-+.|.-.|+++.|+..-+.- .+.|-+ .....+..+.+++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4566666677778888887655432 222322 2234577888888888999999888877542 221 12334
Q ss_pred hHHHHHHHHhcCCCcchHHHHhhhCC-------cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 397 LGALLIHRLGSARRPVPAAKIFSLLP-------EDQKCTATYTALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
+.-+|.++|.-..+++.|+..+.+-. ..-....++.+|..+|...|..++|+.+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44556666666666666666654321 1111244666677777777777777766655443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.7 Score=44.64 Aligned_cols=163 Identities=17% Similarity=0.163 Sum_probs=91.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCChhh
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEK-GINID-----AVTYTSVMHWLSN----AGDVDGAVNIWEEMKLKECYPTIVS 138 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~ 138 (519)
+..+++..+=.||-+.+.+.+..-.+. ++.-. .-.|+..+..+.. ..+.+.|.++++.+..+ -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344555555556666666666554442 12211 1123444433332 34567777888877776 566665
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010057 139 YTAYM-KILFLNDRVKEATDVYKEMIQRG---LPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214 (519)
Q Consensus 139 ~~~li-~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 214 (519)
|...- +.+...|++++|.+.|++..... -+.....+--+.-++.-.++|++|.+.|..+.+..-. +..+|.-+.-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 54433 34556778888888887654311 1123334555666677788888888888888765322 3333333322
Q ss_pred -HHHhcCCh-------HHHHHHHHHHHH
Q 010057 215 -KCCKAGET-------RTIILILRYMKE 234 (519)
Q Consensus 215 -~~~~~g~~-------~~a~~~~~~~~~ 234 (519)
++...|+. ++|.++|.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 23345666 778888877654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.74 Score=36.01 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=52.2
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCC
Q 010057 330 TIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSAR 409 (519)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 409 (519)
.++..+...+.+.....+++.+...+ ..+....+.++..|++.+. .+..+.+.. ..+.+-...++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444556666666666666655 2455566666666665432 222222221 122233333455555555
Q ss_pred CcchHHHHhhhCCcCCCCchhHHHHHHHHHhc-CCHHHHHHHHHH
Q 010057 410 RPVPAAKIFSLLPEDQKCTATYTALIGVYFSA-GSADKALKIYKT 453 (519)
Q Consensus 410 ~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~ 453 (519)
.++++.-++.++.. |...+..+... ++++.|++++.+
T Consensus 84 l~~~~~~l~~k~~~-------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 84 LYEEAVELYKKDGN-------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred cHHHHHHHHHhhcC-------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 55555555544432 22233333333 555555555543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.042 Score=37.82 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHC----CC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLK----EC-YPT-IVSYTAYMKILFLNDRVKEATDVYKEM 162 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m 162 (519)
+|+.+...|...|++++|+..|++.... |- .|+ ..+++.+..++...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444555555555544444321 10 011 233444444444444444444444443
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.59 E-value=3.7 Score=43.10 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=59.2
Q ss_pred HHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccch--hHHHHHHHHhcCCC
Q 010057 333 EVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVY--LGALLIHRLGSARR 410 (519)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~ 410 (519)
..+.....+++|.-.|+..-+ ..-.+.+|..+|+|.+|..+..++... -+.. +.-.|+.-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHccc
Confidence 333444566666555554321 123456677777777777777766431 1211 22456666777788
Q ss_pred cchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 411 PVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTM 454 (519)
Q Consensus 411 ~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 454 (519)
.-+|-++..+..++ ..-.+..|++...|++|+.+-...
T Consensus 1015 h~eAa~il~e~~sd------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred chhHHHHHHHHhcC------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 88887777766553 233444555666677776665443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.47 E-value=1.4 Score=37.63 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 433 ALIGVYFSAGSADKALKIYKTMCRKGIHPSL---GTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 433 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.+.+-|.+.|.+-.|..-+++|++. .+-.. ..+-.+..+|.+.|..++|.+.-+-+..-.|+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 4566789999999999999999988 23223 35666778999999999998888766554443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.23 Score=39.20 Aligned_cols=86 Identities=6% Similarity=-0.033 Sum_probs=47.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 010057 77 GEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEAT 156 (519)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 156 (519)
...|++++|..+|.-+...++. +..-|..|..++-..+++++|+..|......+. -|...+-....++...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 3456666666666666554433 344445555555555666666666655544432 24444445555566666666666
Q ss_pred HHHHHHHH
Q 010057 157 DVYKEMIQ 164 (519)
Q Consensus 157 ~~~~~m~~ 164 (519)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66655554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.38 Score=43.69 Aligned_cols=153 Identities=11% Similarity=-0.058 Sum_probs=103.1
Q ss_pred HHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHH--HHhcCCcchHHHHHHHHHhcCCCccchhHHHH----------
Q 010057 334 VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGI--LIKLNTFPKVAEIVEEMTKAGHSLGVYLGALL---------- 401 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------- 401 (519)
.+...|+.++|...-....+..- ...+...+++ +--.++.+.+...|.+.+..+ |+.......
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHH
Confidence 44556788888877766665431 1223334433 334578889999999988765 443322221
Q ss_pred ---HHHHhcCCCcchHHHHhhhCCcCCC-----CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH---
Q 010057 402 ---IHRLGSARRPVPAAKIFSLLPEDQK-----CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLL--- 470 (519)
Q Consensus 402 ---~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~--- 470 (519)
.+-..+.|++..|.+.+.+.....| +...|-....+..+.|+..+|+.--++..+. |+.-...++
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra 328 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRA 328 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHH
Confidence 1224577899999999988766544 4556777777888999999999998887765 433333333
Q ss_pred HHHHhcCChhHHHHHHHHhcccCcc
Q 010057 471 AGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 471 ~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.++...++|++|.+.+++..+...+
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3567789999999999988776554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.29 E-value=2.5 Score=39.30 Aligned_cols=443 Identities=13% Similarity=0.102 Sum_probs=227.1
Q ss_pred HhcCCChHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH--Hh
Q 010057 40 LKTHPPMEKAWLFFNWVSRSRGFNHD----RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWL--SN 113 (519)
Q Consensus 40 l~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--~~ 113 (519)
|...++..+|.++|.++.++..-.|. ....+-+|++|.. ++.+.....+..+.+. .| ...|-.+..+. -+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 44458999999999988754422222 2234566777764 4777777777777664 22 23344444332 36
Q ss_pred cCChhhHHHHHHHHHHC--CCCC------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 010057 114 AGDVDGAVNIWEEMKLK--ECYP------------TIVSYTAYMKILFLNDRVKEATDVYKEMIQR----GLPPNCYTYT 175 (519)
Q Consensus 114 ~g~~~~a~~~~~~m~~~--~~~p------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~ 175 (519)
.+.+++|.+.+..-.+. +-.| |-.-=+..+.++...|.+.++..+++++... ...-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78899999888776654 2221 1122256677888999999999999988764 3447888999
Q ss_pred HHHHHHHHcC--------C-------HHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHH
Q 010057 176 VLMEYLVRAG--------K-------YEEALEIFSKMQEA------GVQPDKAACNILIEKCCKA--GETRTIILILRYM 232 (519)
Q Consensus 176 ~li~~~~~~~--------~-------~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~ 232 (519)
.++-.++++- . ++-+.-+..+|... .+.|-......++....-. .+..--.++++..
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 8666555431 1 22233333333221 2445555555555444332 2233344455545
Q ss_pred HHcCCccCHHHHHHHH-HHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHH
Q 010057 233 KENRLALRYPVFKEAL-QTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDS 311 (519)
Q Consensus 233 ~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 311 (519)
...-+.|+...+...+ ..+.. +.+++.+-....... .....-+.-...+..++....+.++...|..
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~----------~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q 319 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASS----------KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQ 319 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5555566555444332 22222 111111110000000 0000001111233445555666666666666
Q ss_pred HHHHHHhcCCCccHH-----HHHHHHHHHhcc----CChhhHHHHHHHHHhCCCCcCHHH-HHHH---HHHHHhcCC-cc
Q 010057 312 LLSGIMDKSIQLDSA-----VISTIIEVNCDH----RRRDGALLAFEYSVKMDLNLERTA-YLAL---IGILIKLNT-FP 377 (519)
Q Consensus 312 ~~~~~~~~~~~~~~~-----~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~-~~~l---~~~~~~~~~-~~ 377 (519)
.+.-+...+...+.. +-..+.+..|.. .+...-+.+|.......+ |..- ...+ ..-+.+.|. -+
T Consensus 320 ~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~de 397 (549)
T PF07079_consen 320 YLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDE 397 (549)
T ss_pred HHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccH
Confidence 665554332221100 011111222211 122333444444443332 2111 1122 223344454 77
Q ss_pred hHHHHHHHHHhcCCCccchhHHHHHHH----Hhc---CCCcchHHHHhhhCCcC--CC----CchhHHHHHHH--HHhcC
Q 010057 378 KVAEIVEEMTKAGHSLGVYLGALLIHR----LGS---ARRPVPAAKIFSLLPED--QK----CTATYTALIGV--YFSAG 442 (519)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~---~g~~~~A~~~~~~~~~~--~~----~~~~~~~li~~--~~~~g 442 (519)
+|+++++.+.+-- +.|...-|.+... |.. ...+.+-.++-+-+.+. +| +...-|-|..| +..+|
T Consensus 398 kalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqg 476 (549)
T PF07079_consen 398 KALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQG 476 (549)
T ss_pred HHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 8888888888743 2344443433322 221 12233333322222222 11 12233445444 45689
Q ss_pred CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccccccchHHHHhhh
Q 010057 443 SADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKICDL 511 (519)
Q Consensus 443 ~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 511 (519)
++.++.-.-.-+. .+.|++.+|..+.-+.....++++|..++..+ +|+....+.-+.+.
T Consensus 477 ey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L--------P~n~~~~dskvqKA 535 (549)
T PF07079_consen 477 EYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL--------PPNERMRDSKVQKA 535 (549)
T ss_pred cHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC--------CCchhhHHHHHHHH
Confidence 9998776554444 35899999999999999999999999999654 45555555555443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.7 Score=37.33 Aligned_cols=201 Identities=18% Similarity=0.101 Sum_probs=140.6
Q ss_pred chhHHHHHHHhcCCHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHH-H
Q 010057 292 IDQGLVLILLKKKNLVAIDSLLSGIMDK-SIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIG-I 369 (519)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 369 (519)
........+...++...+...+...... ........+......+...++...+...+.........+. ........ .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHH
Confidence 3345556777788888888777776543 3344555666677777777888999999998887554331 22222223 7
Q ss_pred HHhcCCcchHHHHHHHHHhcCC--CccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC--chhHHHHHHHHHhcCCHH
Q 010057 370 LIKLNTFPKVAEIVEEMTKAGH--SLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC--TATYTALIGVYFSAGSAD 445 (519)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~ 445 (519)
+...|+++.+...+........ ......+......+...++.+.+...+.......++ ...+..+...+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 8899999999999999866221 122333333344466788899999999888776443 577888888999999999
Q ss_pred HHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 446 KALKIYKTMCRKGIHPS-LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 446 ~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.|...+...... .|+ ...+......+...+..+++...+++..+..|.
T Consensus 220 ~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 220 EALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999998877 344 344555555555777799999999888777665
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.20 E-value=2.2 Score=38.22 Aligned_cols=131 Identities=15% Similarity=0.262 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChhhHHHHHHHHHHCCC---CCChhhHHHHHHHHHhcCC-
Q 010057 82 ISSMKYVFELMQEKGINIDAVTYTSVMHWLSN--AG----DVDGAVNIWEEMKLKEC---YPTIVSYTAYMKILFLNDR- 151 (519)
Q Consensus 82 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~~~- 151 (519)
++....+++.|.+.|+.-+..+|-+....... .. ...+|..+|+.|++... .++..++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566777778888777666665553332222 22 24567788888877622 1234455555544 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010057 152 ---VKEATDVYKEMIQRGLPPNCY--TYTVLMEYLVRAGK--YEEALEIFSKMQEAGVQPDKAACNILIE 214 (519)
Q Consensus 152 ---~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~li~ 214 (519)
.+.++.+|+.+.+.|+..+.. ..+.++..+....+ ...+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 355677777777777665433 22333332222222 4477778888888888777777665543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.7 Score=36.79 Aligned_cols=144 Identities=17% Similarity=0.152 Sum_probs=69.6
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhC--CCCcCHHH--HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHH
Q 010057 327 VISTIIEVNCDHRRRDGALLAFEYSVKM--DLNLERTA--YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLI 402 (519)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 402 (519)
.|.--...|..+|.++-|-..+++.-+. ++.|+... |..-+......++...|.+++ ...-
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~---------------gk~s 157 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY---------------GKCS 157 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH---------------HHhh
Confidence 3445555666666666666555554432 33343322 333333333333333332222 2233
Q ss_pred HHHhcCCCcchHHHHhhhCCcC------CCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCcccHHHHHHH
Q 010057 403 HRLGSARRPVPAAKIFSLLPED------QKC-TATYTALIGVYFSAGSADKALKIYKTMCRKG---IHPSLGTFNVLLAG 472 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~~~~------~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~l~~~ 472 (519)
..+.+..++++|-..|.+-... -++ -..|-..|-.|....++..|.+.++.-..-+ -.-|..+...|+.+
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 3444555555555444432211 011 1235555556666677777777777643321 12345567777777
Q ss_pred HHhcCChhHHHHHH
Q 010057 473 LEKLGRVSDAEIYR 486 (519)
Q Consensus 473 ~~~~g~~~~a~~~~ 486 (519)
|.. |+.+++..++
T Consensus 238 yd~-gD~E~~~kvl 250 (308)
T KOG1585|consen 238 YDE-GDIEEIKKVL 250 (308)
T ss_pred hcc-CCHHHHHHHH
Confidence 643 6666655544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.65 Score=44.21 Aligned_cols=153 Identities=11% Similarity=0.089 Sum_probs=100.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 123 (519)
++++.+.++.+.-.--.. -| ..-.+.++..+-+.|-.+.|.++-.+-..+ .....+.|+++.|.++
T Consensus 275 ~d~~~v~~~i~~~~ll~~-i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLLPN-IP-KDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIALEI 340 (443)
T ss_dssp T-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHHHH
T ss_pred CChhhhhhhhhhhhhccc-CC-hhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHHHH
Confidence 577776666541110111 12 555788888888888888888875443322 4456678888888887
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010057 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQ 203 (519)
Q Consensus 124 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 203 (519)
.++. ++...|..|.....+.|+++-|++.|++..+ |..|+-.|.-.|+.++..++.+.....|-
T Consensus 341 a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 341 AKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp CCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 6543 3677999999999999999999999987654 56677778888998888888877776652
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 204 PDKAACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 204 p~~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
++....++...|+.++..+++.+
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 56666677778888888887765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=95.02 E-value=1.4 Score=38.37 Aligned_cols=138 Identities=10% Similarity=0.087 Sum_probs=80.2
Q ss_pred CChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-ChhhHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHH
Q 010057 80 KRISSMKYVFELMQE-KGINIDAVTYTSVMHWLSN-AG-DVDGAVNIWEEMKL-KECYPTIVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 80 ~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~a 155 (519)
.-..+|.++|+.... ..+--|..+...+++.+.. .+ ....-.++.+-+.. .|-.++..+...++..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345566666653222 2234466666666666655 22 22223333333332 23456666777777777777777777
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHHH
Q 010057 156 TDVYKEMIQR-GLPPNCYTYTVLMEYLVRAGKYEEALEIFSK-----MQEAGVQPDKAACNILIEKCC 217 (519)
Q Consensus 156 ~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~-----m~~~g~~p~~~~~~~li~~~~ 217 (519)
.++++..... +..-|...|..+|+.....|+..-..++.++ +++.++..+...-..+-+.+.
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 7777666554 4455667777777777777777766666654 244556666665555544443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.93 E-value=2.4 Score=37.12 Aligned_cols=147 Identities=14% Similarity=0.069 Sum_probs=101.7
Q ss_pred HHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcch
Q 010057 334 VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVP 413 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (519)
.....|+..+|..+|+........ +...-..+..+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 346678899999999888876422 3455667888999999999999999988654322222233344555666666666
Q ss_pred HHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCChhH
Q 010057 414 AAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKG-IHPSLGTFNVLLAGLEKLGRVSD 481 (519)
Q Consensus 414 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~l~~~~~~~g~~~~ 481 (519)
...+-+.....+.|+..--.+...+...|+.++|++.+-.+.+.+ -.-|...-..++..+.-.|.-+.
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 666666666655567777788889999999999999877766552 12355566777777777674433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.91 Score=43.23 Aligned_cols=160 Identities=14% Similarity=0.097 Sum_probs=109.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcch
Q 010057 299 ILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPK 378 (519)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 378 (519)
...-.++++.+..++..-.-.. ..+....+.+++.+-+.|-++.|+.+.. |+. .-.....+.|+++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHH
Confidence 5566788888666664111000 1134557788888888899999987754 222 22344567899888
Q ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010057 379 VAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKG 458 (519)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 458 (519)
|.++.+.. .+...|..|.+...+.|+++-|++.|.+..+ |..|+-.|.-.|+.++-.++.+.....|
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 87665443 4677999999999999999999999999876 7888888999999988888887777776
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHhc
Q 010057 459 IHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKK 490 (519)
Q Consensus 459 ~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~ 490 (519)
-++..+.++.-.|+.++..+++.+..
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 36677777888899999999887653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.1 Score=35.53 Aligned_cols=51 Identities=16% Similarity=0.090 Sum_probs=23.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 010057 439 FSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEK 489 (519)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~ 489 (519)
..+|.++......+-+-..|-+.....-..|.-+-.+.|++.+|..+|+.+
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 345555555554444433332222233333444445555555555555544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.83 Score=42.66 Aligned_cols=66 Identities=9% Similarity=-0.059 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDA----VTYTSVMHWLSNAGDVDGAVNIWEEMKLK 130 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 130 (519)
+.+...|+.+..+|.+.|++++|...|+...+.. |+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778888888888889999998888887763 442 35888888888888888888888888765
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.64 E-value=5.2 Score=39.76 Aligned_cols=116 Identities=12% Similarity=0.090 Sum_probs=87.6
Q ss_pred CCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHH
Q 010057 355 DLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTAL 434 (519)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 434 (519)
|......+.+--+.-+...|+..+|.++-.+.. -|+...|-.-+.+++..+++++-+++-..... +.-|.-.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks----PIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS----PIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC----CCCchhH
Confidence 333444555666667778898888888776653 47888888889999999999887776655543 7889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 010057 435 IGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRK 487 (519)
Q Consensus 435 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~ 487 (519)
+.+|.+.|+.++|.+++-+.... . -.+.+|.+.|++.+|.+.--
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence 99999999999999998654211 1 56778888899888876653
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.63 E-value=1.7 Score=34.00 Aligned_cols=84 Identities=10% Similarity=0.102 Sum_probs=38.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 010057 71 TMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLND 150 (519)
Q Consensus 71 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 150 (519)
.++..+...+........++.+.+.+. .+...++.++..|++.. .+...+.+.. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 344444444555555555555555442 34455555555555442 2222222221 112333334555555555
Q ss_pred CHHHHHHHHHHH
Q 010057 151 RVKEATDVYKEM 162 (519)
Q Consensus 151 ~~~~a~~~~~~m 162 (519)
.++++.-++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.59 E-value=2.9 Score=36.60 Aligned_cols=148 Identities=19% Similarity=0.207 Sum_probs=95.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 010057 74 DIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVK 153 (519)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 153 (519)
......|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3446778888888888888775433 456677788888888888888888888765421112222223344555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHH
Q 010057 154 EATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA--GVQPDKAACNILIEKCCKAGETRTI 225 (519)
Q Consensus 154 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a 225 (519)
+..++-++.-.. +-|...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..|+..+.-.|.-+-+
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHH
Confidence 555555555543 226777777888888888888888777666543 433 556667777777777744333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.55 E-value=2.5 Score=35.74 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010057 82 ISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127 (519)
Q Consensus 82 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 127 (519)
++.|.-+.++|.+.. --+..|+.....|..+|..+.|-..+++.
T Consensus 74 yEqaamLake~~kls--Evvdl~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 74 YEQAAMLAKELSKLS--EVVDLYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 344444444444431 01234555556666666666655555544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.44 E-value=2.1 Score=34.29 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=12.5
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010057 90 ELMQEKGINIDAVTYTSVMHWLSNAGD 116 (519)
Q Consensus 90 ~~m~~~~~~~~~~~~~~li~~~~~~g~ 116 (519)
..+.+.++.|+...+..+++.+.+.|+
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 333344444444444444444444444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.14 Score=46.29 Aligned_cols=124 Identities=12% Similarity=-0.015 Sum_probs=68.7
Q ss_pred HHHHHhcCCcchHHHHHHHHHhc-----CCCc---------cchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhH
Q 010057 367 IGILIKLNTFPKVAEIVEEMTKA-----GHSL---------GVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATY 431 (519)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ 431 (519)
.+.+.+.|++..|..-|+...+. +.++ -..++..|.-++.+.+++.+|.+.-+..... ++|+-..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 45667778888888887776531 1111 1223344555566666666666666555443 3445555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH-HhcCC-hhHHHHHHHHhccc
Q 010057 432 TALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGL-EKLGR-VSDAEIYRKEKKSI 492 (519)
Q Consensus 432 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~-~~~g~-~~~a~~~~~~~~~~ 492 (519)
---..+|...|+++.|+..|+++++. .|+......=+..| .+... .++..++|..|-..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55566666666777777777666665 45544444444444 22222 23335556555433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.13 Score=28.83 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 431 YTALIGVYFSAGSADKALKIYKTM 454 (519)
Q Consensus 431 ~~~li~~~~~~g~~~~A~~~~~~m 454 (519)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455556666666666666666653
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.07 Score=31.70 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
.+|..+..+|.+.|++++|.++|++..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35666777777777777777777777766
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.02 E-value=5.6 Score=37.67 Aligned_cols=56 Identities=5% Similarity=0.086 Sum_probs=24.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 107 VMHWLSNAGDVDGAVNIWEEMKLKECY-PTIVSYTAYMKILFLNDRVKEATDVYKEM 162 (519)
Q Consensus 107 li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m 162 (519)
+..++-+.|+.++|++.|.+|.+.... -+......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333344445555555555554432111 01223344445555555555555555444
|
The molecular function of this protein is uncertain. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.01 E-value=1.1 Score=38.66 Aligned_cols=99 Identities=17% Similarity=0.154 Sum_probs=54.0
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhCCC--CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHH
Q 010057 327 VISTIIEVNCDHRRRDGALLAFEYSVKMDL--NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHR 404 (519)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 404 (519)
.|+.-+.. .+.|++..|...|....+... .-....+-.|..++...|+++.|..+|..+.+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-------------- 208 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-------------- 208 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC--------------
Confidence 45444443 344556666666666665421 1222335556666666666666666666665532
Q ss_pred HhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 405 LGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 405 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
++.+.-+...-.|..+..+.|+.++|...|++..+.
T Consensus 209 -----------------P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 209 -----------------PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred -----------------CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 111122345555666666666777777777766665
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.99 E-value=2.6 Score=33.74 Aligned_cols=134 Identities=11% Similarity=0.136 Sum_probs=79.0
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 010057 50 WLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKL 129 (519)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 129 (519)
.++.+.+ ...+++|+...+..+++.+.+.|++....++ ...++-+|.......+-.+.. ....+.++=-+|..
T Consensus 14 lEYirSl-~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSL-NQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH
Confidence 5666666 4678899999999999999999987665554 466666676655554433332 22333333333333
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 130 KECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 130 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
+ =...+..++..+...|++-+|+++.+..... +......++.+..+.+|...=..+|+-..
T Consensus 87 R----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 87 R----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred H----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 1124566677777888888888887665322 22223445555555555544444444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.98 E-value=4.8 Score=36.72 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=84.5
Q ss_pred HHHHHHHHHH--hcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--
Q 010057 103 TYTSVMHWLS--NAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKIL--FLNDRVKEATDVYKEMIQRGLPPNCYTYTV-- 176 (519)
Q Consensus 103 ~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-- 176 (519)
-|..|-.++. -.|+-..|.++-.+-.+. +.-|....-.|+.+- .-.|+++.|.+-|+.|.. |+.|-..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhH
Confidence 3444544443 357777777776665432 233666666666544 347999999999999986 4444333
Q ss_pred --HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 177 --LMEYLVRAGKYEEALEIFSKMQEAGVQPDK-AACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 177 --li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
|.-.--+.|+.+.|..+-+..-.. .|.. ....+.+...|..|+++.|+++++.-+...
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~ 218 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAK 218 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 333335678888888888777654 3333 477888999999999999999998766543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.96 E-value=1.4 Score=34.83 Aligned_cols=53 Identities=19% Similarity=0.131 Sum_probs=26.8
Q ss_pred hhhHHhhhccCChhHHHHHHHhC----CCCCCHHHHHHHHhc-CCChHHHHHHHHHHh
Q 010057 5 ISNVYKILKYSTWDSAQDLLKNL----PIKWDSYTVNQVLKT-HPPMEKAWLFFNWVS 57 (519)
Q Consensus 5 ~~~i~~~~~~~~~~~a~~~~~~~----~~~p~~~~~~~ll~~-~~~~~~A~~~~~~~~ 57 (519)
+..+..-++.++.+++..+++.+ |..|...++...+.- .|+|.+|+.+|+.+.
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34444455555666666666655 223333444444432 256666666666553
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.2 Score=29.69 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=21.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 465 TFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 465 t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
++..+..+|.+.|++++|++.++++.+..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45566667777777777777777777666653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=1.7 Score=40.77 Aligned_cols=145 Identities=11% Similarity=0.020 Sum_probs=97.7
Q ss_pred ChhhHHHHHHHHHhC-CCCcCHH-HHHHHHHHHHh---------cCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcC
Q 010057 340 RRDGALLAFEYSVKM-DLNLERT-AYLALIGILIK---------LNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSA 408 (519)
Q Consensus 340 ~~~~a~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (519)
..+.|+.+|.+.... ...|+.. .|..+..++.. ..+..+|.+..+...+.+ +.|+.....+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456788888888732 3445433 24444333322 223456777777777776 56777777788877888
Q ss_pred CCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---cccHHHHHHHHHhcCChhHHHH
Q 010057 409 RRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS---LGTFNVLLAGLEKLGRVSDAEI 484 (519)
Q Consensus 409 g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~l~~~~~~~g~~~~a~~ 484 (519)
++++.|...|++.....|| ...|......+.-.|+.++|.+.+++..+. .|. .......++.|+..+ .++|..
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 8899999999999887666 456777777777899999999999997766 343 233444455666655 566666
Q ss_pred HHHH
Q 010057 485 YRKE 488 (519)
Q Consensus 485 ~~~~ 488 (519)
++-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 5543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.94 Score=39.67 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=58.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 010057 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE-----AGVQPDKAACN 210 (519)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~ 210 (519)
..++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3466777777777788888888888877753 33677788888888888888888888777754 47788777777
Q ss_pred HHHHH
Q 010057 211 ILIEK 215 (519)
Q Consensus 211 ~li~~ 215 (519)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66666
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.33 Score=41.69 Aligned_cols=87 Identities=15% Similarity=0.159 Sum_probs=63.1
Q ss_pred cCCCcchHHHHhhhCCcCCCC----chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----cccHHHHHHHHHhcCC
Q 010057 407 SARRPVPAAKIFSLLPEDQKC----TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS----LGTFNVLLAGLEKLGR 478 (519)
Q Consensus 407 ~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~l~~~~~~~g~ 478 (519)
+.|++.+|...|....+.-|+ +..+-=|..++...|++++|..+|..+.+. .|+ +..+--|..+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCCCChHHHHHHHHHHHHhcC
Confidence 445566666666554443222 233444888999999999999999999875 232 3456667778899999
Q ss_pred hhHHHHHHHHhcccCcc
Q 010057 479 VSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 479 ~~~a~~~~~~~~~~~~~ 495 (519)
.++|...|+++.+-.|+
T Consensus 231 ~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 231 TDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 99999999999887775
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.76 E-value=8.5 Score=38.86 Aligned_cols=90 Identities=11% Similarity=0.179 Sum_probs=40.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhc-
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG-VQPDKAACNILIEKCCKA- 219 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~- 219 (519)
....+.-.|+++.|.+.+.+ ..+...|.+.+...+..|.-.+-.+... ..+.... -.|...-+..||..|.+.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34556678899999988877 2223445555555554443222222111 2222110 011114567778777764
Q ss_pred --CChHHHHHHHHHHHHcC
Q 010057 220 --GETRTIILILRYMKENR 236 (519)
Q Consensus 220 --g~~~~a~~~~~~~~~~~ 236 (519)
.++..|.+++-.+....
T Consensus 339 ~~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 339 EITDPREALQYLYLICLFK 357 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS-
T ss_pred hccCHHHHHHHHHHHHHcC
Confidence 56777887777665543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.0049 Score=48.64 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=21.8
Q ss_pred HHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHH
Q 010057 333 EVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVE 384 (519)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 384 (519)
..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3333444444444444444443333334444444444444444444433333
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.91 Score=39.75 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 010057 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ-----RGLPPNCYTYT 175 (519)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~ 175 (519)
..++..++..+..+|+.+.+...++++..... -+...|..+|.+|.+.|+...|...|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 45788888999999999999999999988743 3788999999999999999999999988765 58889888877
Q ss_pred HHHHHH
Q 010057 176 VLMEYL 181 (519)
Q Consensus 176 ~li~~~ 181 (519)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 776663
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.79 Score=41.76 Aligned_cols=123 Identities=16% Similarity=0.076 Sum_probs=85.5
Q ss_pred HHhccCChhhHHHHHHHHHhC-----CCCc---------CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHH
Q 010057 334 VNCDHRRRDGALLAFEYSVKM-----DLNL---------ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGA 399 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (519)
.|.+.|++..|...|++.... +..+ -..++..+..++.+.+++..|++.-...+..+ ++|....-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 456666666666666654332 1111 12357778888999999999999999999877 56776666
Q ss_pred HHHHHHhcCCCcchHHHHhhhCCcCCCCchh-HHHHHHHHHhcCCHH-HHHHHHHHHHHC
Q 010057 400 LLIHRLGSARRPVPAAKIFSLLPEDQKCTAT-YTALIGVYFSAGSAD-KALKIYKTMCRK 457 (519)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~-~A~~~~~~m~~~ 457 (519)
.-..++...|+++.|+..|+++.+..|+... -+.++.+--+...+. +..++|..|...
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6778899999999999999999887665444 444444444444433 347788888765
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.63 E-value=3.3 Score=36.83 Aligned_cols=116 Identities=15% Similarity=0.102 Sum_probs=54.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhH----HHHHHHHHhcCCHH
Q 010057 78 EAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSY----TAYMKILFLNDRVK 153 (519)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~----~~li~~~~~~~~~~ 153 (519)
.+|+..+|...|+.+.+. .+-|...+...=.+|...|+.+.-...++++... ..||...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345555555555555543 2224445555555555555555555555554432 12233222 22223334455555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010057 154 EATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSK 196 (519)
Q Consensus 154 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 196 (519)
+|++.-++..+.+ +-|...-.++...+--.|++.++.++..+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 5555555555432 22344444444445555555555555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.079 Score=29.23 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 466 FNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 466 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
|..+..+|...|++++|...+++..+++|
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 44444455555555555555555554444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.062 Score=30.23 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=24.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhcccC
Q 010057 465 TFNVLLAGLEKLGRVSDAEIYRKEKKSIQ 493 (519)
Q Consensus 465 t~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 493 (519)
+|..+...|.+.|++++|.+++++...+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47789999999999999999999966543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.23 E-value=2 Score=38.19 Aligned_cols=154 Identities=12% Similarity=0.079 Sum_probs=103.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHH----HHHHHhcCCc
Q 010057 301 LKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLAL----IGILIKLNTF 376 (519)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~ 376 (519)
...|+..+|...++++.+. .+.|...+.-.=.+|.-+|+.+.-...++++... ..|+...|..+ .-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3567777777777776653 3446666777777888888888888888877654 12344333322 2234567888
Q ss_pred chHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-----chhHHHHHHHHHhcCCHHHHHHHH
Q 010057 377 PKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-----TATYTALIGVYFSAGSADKALKIY 451 (519)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~ 451 (519)
++|++.-++..+.+ +.|.-...++.+.+-..|++.++.++..+-...-.+ ..-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 89988888887765 456677778888888888999988887766554111 223444445566678899999998
Q ss_pred HHHHHC
Q 010057 452 KTMCRK 457 (519)
Q Consensus 452 ~~m~~~ 457 (519)
+.-+-.
T Consensus 271 D~ei~k 276 (491)
T KOG2610|consen 271 DREIWK 276 (491)
T ss_pred HHHHHH
Confidence 764433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.21 E-value=8.4 Score=38.98 Aligned_cols=146 Identities=21% Similarity=0.215 Sum_probs=84.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLS----NAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
...-|..+.+..-++-|..+.+ ..+ .+......++..|+ +.|++++|...|-+-... +.| ..+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 4455556666666666666543 222 24444444444443 567788777776654322 122 23455
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChH
Q 010057 145 ILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQ-PDKAACNILIEKCCKAGETR 223 (519)
Q Consensus 145 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~ 223 (519)
-|.......+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|.. .| ....+..|.+.+-.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLD 480 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHH
Confidence 556666667777777777777765 66666777888888888777776665554 2222 12 233455555555555
Q ss_pred HHHHHHH
Q 010057 224 TIILILR 230 (519)
Q Consensus 224 ~a~~~~~ 230 (519)
.|..+-.
T Consensus 481 ~a~~LA~ 487 (933)
T KOG2114|consen 481 EAELLAT 487 (933)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.11 Score=28.57 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 466 FNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 466 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
+..+...+...|++++|.+.+++..++.|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 33444455555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.92 E-value=3.2 Score=31.43 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 176 VLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 176 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
.-+......|.-++-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344445555555555555555432 2344455555555555555555555555555555544
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.84 E-value=4.2 Score=33.27 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 173 TYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPD--KAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 173 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.+...+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566677777777777777777777776533332 23556677777777777777777666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.80 E-value=8.3 Score=35.98 Aligned_cols=147 Identities=14% Similarity=0.043 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHH
Q 010057 325 SAVISTIIEVNCDHRRRDGALLAFEYSVKMD-LNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIH 403 (519)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 403 (519)
...|...+++-.+....+.|..+|-++++.+ +.++...+++++.-++ .|+...|..+|+.=...- +.+..-..-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3456667777667777888999999998888 5577777888876554 578888888888766542 223333344556
Q ss_pred HHhcCCCcchHHHHhhhCCcC-CCC--chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 010057 404 RLGSARRPVPAAKIFSLLPED-QKC--TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK 475 (519)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~~~~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~ 475 (519)
.+...++-+.|..+|+...+. ..+ ...|..+|.--..-|+...|..+=++|.+. -|-..+...+.+-|.-
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~i 547 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHhh
Confidence 667788888899999855432 112 457889999888899999999999999877 6777676666666643
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.76 E-value=2.7 Score=32.50 Aligned_cols=72 Identities=13% Similarity=0.058 Sum_probs=36.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010057 77 GEAKRISSMKYVFELMQEKGIN--IDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148 (519)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 148 (519)
.+.|++++|.+.|+.+..+-.. -.....-.|+.+|.+.++++.|...+++..+....--..-|...+.+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3556666666666666553111 12234444556666666666666666666555322222344444444433
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.65 E-value=1.6 Score=35.50 Aligned_cols=90 Identities=16% Similarity=-0.016 Sum_probs=55.3
Q ss_pred HHHHhcCCCcchHHHHhhhCCcCCCCc----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 010057 402 IHRLGSARRPVPAAKIFSLLPEDQKCT----ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLG 477 (519)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g 477 (519)
...+..++++++|+.-++.....+.|. ..=-.|.+...+.|.+++|+.+++...+.+. .+.....-.+++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 444667777777777776554432221 1223355566777888888888876655432 1222333445677788
Q ss_pred ChhHHHHHHHHhcccC
Q 010057 478 RVSDAEIYRKEKKSIQ 493 (519)
Q Consensus 478 ~~~~a~~~~~~~~~~~ 493 (519)
+.++|..-|++..+..
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888888777665
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.58 E-value=7.5 Score=34.90 Aligned_cols=85 Identities=16% Similarity=0.307 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCh
Q 010057 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR--AG----KYEEALEIFSKMQEAGV---QPDKAACNILIEKCCKAGET 222 (519)
Q Consensus 152 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~----~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~ 222 (519)
+++...+++.|.+.|..-+..+|-+....... .. ...+|..+|+.|++... .++..++..|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455677777777777777666553333222 22 24677788888877632 2344455555433 23332
Q ss_pred ----HHHHHHHHHHHHcCCc
Q 010057 223 ----RTIILILRYMKENRLA 238 (519)
Q Consensus 223 ----~~a~~~~~~~~~~~~~ 238 (519)
+.++.+|+.+.+.|+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~ 175 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFK 175 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 3445555555554543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=9.6 Score=35.86 Aligned_cols=124 Identities=16% Similarity=0.072 Sum_probs=71.9
Q ss_pred hhhHHhhhccCChhHHHH-HHHhC---CCCCCHHHHHHHH-hcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 010057 5 ISNVYKILKYSTWDSAQD-LLKNL---PIKWDSYTVNQVL-KTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEA 79 (519)
Q Consensus 5 ~~~i~~~~~~~~~~~a~~-~~~~~---~~~p~~~~~~~ll-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 79 (519)
...|-+....|+...|-+ ++..+ +..|+....-+.| ...|+++.+.+.+.... .-+.....+...+++..-+.
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~--~~~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVE--KIIGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchh--hhhcCCchHHHHHHHhhhch
Confidence 344555555566655433 23322 3345544444444 34477777777766553 22344556667777777777
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 010057 80 KRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKE 131 (519)
Q Consensus 80 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 131 (519)
|+++.|..+-+.|....++ ++++........-..|-++++.-.|++....+
T Consensus 371 ~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 7777777777777776665 45544443333344566777777777766553
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.42 E-value=2.8 Score=32.56 Aligned_cols=53 Identities=17% Similarity=0.056 Sum_probs=27.4
Q ss_pred hhhHHhhhccCChhHHHHHHHhC----CCCCCHHHHHHHHhc-CCChHHHHHHHHHHh
Q 010057 5 ISNVYKILKYSTWDSAQDLLKNL----PIKWDSYTVNQVLKT-HPPMEKAWLFFNWVS 57 (519)
Q Consensus 5 ~~~i~~~~~~~~~~~a~~~~~~~----~~~p~~~~~~~ll~~-~~~~~~A~~~~~~~~ 57 (519)
+..+..-++.++++++..+++.+ +..|...++-..|.- .|+|.+|+.+|+.+.
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence 33444444555666666666655 333334444444443 256666666666553
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.33 E-value=4.2 Score=31.46 Aligned_cols=70 Identities=11% Similarity=0.020 Sum_probs=34.4
Q ss_pred CChHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010057 44 PPMEKAWLFFNWVSRSRGFNH-DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN 113 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 113 (519)
|+++.|.+.|+.+..+....| ....--.++.+|.+.+++++|...+++..+....-...-|...+.+++.
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 566666666665543333222 2334445555566666666666666665554322222334444444433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.04 E-value=5.3 Score=31.93 Aligned_cols=135 Identities=13% Similarity=0.067 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHH-HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHH-
Q 010057 326 AVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTA-YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIH- 403 (519)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 403 (519)
..|..-++ +++.+..++|+..|..+.+.|...-+.. -..........|+...|...|.++-...-.|-..--.+-++
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444444 3667889999999999988775433322 23334456778999999999999987654443331222222
Q ss_pred --HHhcCCCcchHHHHhhhCCcCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010057 404 --RLGSARRPVPAAKIFSLLPEDQK--CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP 461 (519)
Q Consensus 404 --~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 461 (519)
.+...|.+++.....+-+...+. ....-..|.-+-.+.|++.+|.+.|.........|
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 25677888888888877665422 23445678888889999999999999887653344
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.94 E-value=14 Score=36.64 Aligned_cols=131 Identities=8% Similarity=0.022 Sum_probs=67.2
Q ss_pred cCChhHHHHHHHhCCCCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCC--------CCHHHHHHHHHHHHhcCCh
Q 010057 14 YSTWDSAQDLLKNLPIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFN--------HDRFTYTTMLDIFGEAKRI 82 (519)
Q Consensus 14 ~~~~~~a~~~~~~~~~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~~~~ 82 (519)
.=..++|.+..+ ..|.+..|..+-... -.++.|...|-+...-.|++ .+...-.+=+.+| .|.+
T Consensus 676 ~vgledA~qfiE---dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~f 750 (1189)
T KOG2041|consen 676 AVGLEDAIQFIE---DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEF 750 (1189)
T ss_pred HhchHHHHHHHh---cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcch
Confidence 334555555555 457777776654332 34555555554432222221 1111112223333 4889
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHH
Q 010057 83 SSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT----IVSYTAYMKILFLNDRVKEATDV 158 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~ 158 (519)
++|++++-+|-++.+ .|..+.+.|++-.+.++++.- |-..| ...|+.+...++....|++|.+.
T Consensus 751 eeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 751 EEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988877632 245555666666655554421 11111 23455555555555556666555
Q ss_pred HHH
Q 010057 159 YKE 161 (519)
Q Consensus 159 ~~~ 161 (519)
|..
T Consensus 819 Y~~ 821 (1189)
T KOG2041|consen 819 YSY 821 (1189)
T ss_pred HHh
Confidence 543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.16 Score=29.52 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=13.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhccc
Q 010057 465 TFNVLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 465 t~~~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
+++.+...|...|++++|..++++..++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 3444444455555555555555444443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.41 E-value=5.8 Score=35.05 Aligned_cols=48 Identities=21% Similarity=0.439 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 151 RVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 151 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
++++++.++..=.+.|+-||..+++.+|+.+.+.+++.+|..+...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555554444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.37 E-value=2.9 Score=34.23 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHH--HHHHHHHHHhcCCcchHHHHHHHHHh
Q 010057 326 AVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTA--YLALIGILIKLNTFPKVAEIVEEMTK 388 (519)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (519)
..+..+...|++.|+.+.|++.|.++++....+.... +..+|+...-.+++..+.........
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466778888999999999999999888765554433 67788888888999888888777654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.31 E-value=23 Score=37.73 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=38.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC
Q 010057 144 KILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKA--ACNILIEKCCKAGE 221 (519)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~ 221 (519)
.-+.....+++|--+|+..-+. ..-+.+|..+|+|.+|..+..++... -|.. +-..|+.-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHccc
Confidence 3333455555555555443221 12345566666666666666655431 1222 12445555666666
Q ss_pred hHHHHHHHHHH
Q 010057 222 TRTIILILRYM 232 (519)
Q Consensus 222 ~~~a~~~~~~~ 232 (519)
+-+|-++..+.
T Consensus 1015 h~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1015 HYEAAKILLEY 1025 (1265)
T ss_pred chhHHHHHHHH
Confidence 66666655543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.16 E-value=3.1 Score=40.16 Aligned_cols=151 Identities=14% Similarity=0.128 Sum_probs=86.6
Q ss_pred hhccCChhHHHHHHHhCCCCCCHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010057 11 ILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFE 90 (519)
Q Consensus 11 ~~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 90 (519)
+.-+|+++.|..++..++ ++.......++...|-.++|+++- +|.. .-.....+.|+++.|.++..
T Consensus 596 ~vmrrd~~~a~~vLp~I~-k~~rt~va~Fle~~g~~e~AL~~s----------~D~d---~rFelal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP-KEIRTKVAHFLESQGMKEQALELS----------TDPD---QRFELALKLGRLDIAFDLAV 661 (794)
T ss_pred HhhhccccccccccccCc-hhhhhhHHhHhhhccchHhhhhcC----------CChh---hhhhhhhhcCcHHHHHHHHH
Confidence 344566666666666664 444444455555555555555432 2211 11123345677777777654
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010057 91 LMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN 170 (519)
Q Consensus 91 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 170 (519)
+.. +..-|..|-++....|++..|.+.|.+.. -|..|+-.+...|+.+....+-....+.|.
T Consensus 662 e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~--- 723 (794)
T KOG0276|consen 662 EAN------SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK--- 723 (794)
T ss_pred hhc------chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHHHHHHHHhhcc---
Confidence 432 45667777777777777777777776543 245566666667776665555555555542
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010057 171 CYTYTVLMEYLVRAGKYEEALEIFSK 196 (519)
Q Consensus 171 ~~~~~~li~~~~~~~~~~~a~~~~~~ 196 (519)
.|.-.-+|...|+++++.+++..
T Consensus 724 ---~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 ---NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ---cchHHHHHHHcCCHHHHHHHHHh
Confidence 12233345566777777766644
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.05 E-value=15 Score=35.09 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 010057 139 YTAYMKILFLNDRVKEATDVYKEMIQRGLP-PNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPD-KAACNILIEKC 216 (519)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~ 216 (519)
-..+..++-+.|+.++|.+.+++|.+..-. -+......|+.++...+.+.++..++.+..+...+.+ ...|+..+--+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 345666777899999999999999875211 1344777899999999999999999999865433222 23666654333
|
The molecular function of this protein is uncertain. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.04 E-value=11 Score=33.66 Aligned_cols=218 Identities=12% Similarity=0.083 Sum_probs=122.1
Q ss_pred hccCChhHHHHHHHhCCC---CCCHHHHHHH--------Hhc--CC-ChHHHHHHHHHHhh-------cCCCCCCH----
Q 010057 12 LKYSTWDSAQDLLKNLPI---KWDSYTVNQV--------LKT--HP-PMEKAWLFFNWVSR-------SRGFNHDR---- 66 (519)
Q Consensus 12 ~~~~~~~~a~~~~~~~~~---~p~~~~~~~l--------l~~--~~-~~~~A~~~~~~~~~-------~~~~~~~~---- 66 (519)
.+.|+.+.|..++.+... ..++.....+ ... .+ +++.|...+++... .....|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 578899999999998821 1222222222 111 25 66666655544321 12234444
Q ss_pred -HHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 67 -FTYTTMLDIFGEAKRIS---SMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 67 -~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
.++..++.+|...+..+ +|..+++.+...... .+.++..-+..+.+.++.+.+.+++.+|...- .-....+...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 45677778887777654 556666666554222 35566666777777899999999999998762 2134555555
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHHCCCCCCHH-HHH-HHHH-HHH--HcC------CHHHHHHHHHHHHHc-CCCCCHH
Q 010057 143 MKIL---FLNDRVKEATDVYKEMIQRGLPPNCY-TYT-VLME-YLV--RAG------KYEEALEIFSKMQEA-GVQPDKA 207 (519)
Q Consensus 143 i~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~-~li~-~~~--~~~------~~~~a~~~~~~m~~~-g~~p~~~ 207 (519)
+..+ ... ....|...+..+....+.|... ... .++. .+. +.+ ..+...++++.+.+. +.+.+..
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 5554 333 3456667777766655555553 111 1111 111 111 144555555544332 3334444
Q ss_pred HHHHH---H----HHHHhcCChHHHHHHHHHH
Q 010057 208 ACNIL---I----EKCCKAGETRTIILILRYM 232 (519)
Q Consensus 208 ~~~~l---i----~~~~~~g~~~~a~~~~~~~ 232 (519)
+-.++ + ..+.+.++++.|.+.|+-.
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 43333 2 3456789999999988754
|
It is also involved in sporulation []. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.03 E-value=5.1 Score=35.39 Aligned_cols=102 Identities=9% Similarity=0.088 Sum_probs=57.6
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 010057 131 ECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR---GLPP--NCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPD 205 (519)
Q Consensus 131 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 205 (519)
|......+...++..-....+++.+...+-.+... -..| +.+++..++. .-++++++.++..=++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 44445555555555555566666666666555532 0111 1222222222 2255566666666666677777
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 206 KAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 206 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
..+++.+|+.+.+.+++..|.++...|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777777777777766666555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.62 Score=25.50 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
.+|..+..+|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46888999999999999999999998876
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.33 E-value=5.2 Score=28.69 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 84 SMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 84 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
+..+-++.+....+.|++.+..+.+++|-|.+++..|.++|+-.+.+. .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455666666667777777777777777777777777777777776541 122225665553
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.16 E-value=6.6 Score=29.68 Aligned_cols=90 Identities=17% Similarity=0.083 Sum_probs=49.5
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC-CCCCChhhHHHH---HHHHHhcC
Q 010057 75 IFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK-ECYPTIVSYTAY---MKILFLND 150 (519)
Q Consensus 75 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l---i~~~~~~~ 150 (519)
+++..|+.+.|.+.|.+....-.+ +...||.-..++--.|+.++|++=+++..+. |-+ +...+.+. ...|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 345566777777776666554222 5566666666666667777776666665554 222 22222222 22344556
Q ss_pred CHHHHHHHHHHHHHCC
Q 010057 151 RVKEATDVYKEMIQRG 166 (519)
Q Consensus 151 ~~~~a~~~~~~m~~~g 166 (519)
+.+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666665555443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.11 E-value=2.5 Score=29.84 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010057 84 SMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMK 128 (519)
Q Consensus 84 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 128 (519)
++.+-++.+......|++.+..+.+++|-+.+|+..|.++|+-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555556666666666666666666666666666555
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=17 Score=34.39 Aligned_cols=117 Identities=11% Similarity=0.132 Sum_probs=70.0
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHH-HHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010057 45 PMEKAWLFFNWVSRSRGFNHDRF-TYTTMLDIFGE---------AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNA 114 (519)
Q Consensus 45 ~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 114 (519)
..+.|..+|.+........|+-. .|..+-..+.. .....+|.++.+...+.+.. |......+-.+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 45678888888764455566533 33333322221 12334556666666665543 666666666666667
Q ss_pred CChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 115 GDVDGAVNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 115 g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 164 (519)
++++.|...|++.... .|| ..+|........-.|+.++|.+.+++..+
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777777777777665 333 34555555555667777777777777555
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.32 Score=26.65 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 466 FNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 466 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
|..+...|...|++++|...|++..++.|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34444555555555555555555555444
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.97 E-value=16 Score=33.65 Aligned_cols=59 Identities=10% Similarity=0.015 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHH-hcCCCcchHHHHhhhC
Q 010057 361 TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRL-GSARRPVPAAKIFSLL 421 (519)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~ 421 (519)
.....+..+-...|++..|..--+...+. .|....|..|.+.- ...|+-.++...+.+.
T Consensus 330 es~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 330 ESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 34445555555566666555444444433 35555555554442 2336666666555544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.83 Score=24.89 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
.|..+...|.+.|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5677888999999999999999998876
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.43 E-value=7.7 Score=29.36 Aligned_cols=91 Identities=20% Similarity=0.200 Sum_probs=68.5
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHH---HHHHHHHHHHHc
Q 010057 109 HWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR-GLPPNCY---TYTVLMEYLVRA 184 (519)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~---~~~~li~~~~~~ 184 (519)
-+.+..|+++.|++.|.+....- +-....||.=..++--.|+.++|++=+++..+. |-+ +.. .|..=...|-..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 35678899999999999987763 337788999999999999999999999988874 322 332 233334456677
Q ss_pred CCHHHHHHHHHHHHHcC
Q 010057 185 GKYEEALEIFSKMQEAG 201 (519)
Q Consensus 185 ~~~~~a~~~~~~m~~~g 201 (519)
|+.+.|..=|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888888776655
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.39 E-value=1.2 Score=36.23 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=14.2
Q ss_pred HHHhcCCcchHHHHHHHHHhc
Q 010057 369 ILIKLNTFPKVAEIVEEMTKA 389 (519)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~ 389 (519)
-+...|++++|..-|...+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~ 124 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES 124 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh
Confidence 355667777777777777654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.25 E-value=27 Score=35.34 Aligned_cols=26 Identities=8% Similarity=0.082 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 209 CNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
-..|...|...++++.|..++-..++
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhccC
Confidence 34478888888888888888776655
|
|
| >PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G [] | Back alignment and domain information |
|---|
Probab=89.11 E-value=18 Score=33.16 Aligned_cols=109 Identities=8% Similarity=-0.057 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHHCCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010057 117 VDGAVNIWEEMKLKEC----YPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALE 192 (519)
Q Consensus 117 ~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 192 (519)
.+.|.+.|++....+. ..+......++....+.|+.+....+++.... .++..-...++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 5567777777766421 33445556666777777776665555555554 3467777888888888888888888
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHhcCCh--HHHHHHHH
Q 010057 193 IFSKMQEAG-VQPDKAACNILIEKCCKAGET--RTIILILR 230 (519)
Q Consensus 193 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~--~~a~~~~~ 230 (519)
+++.....+ +++.. . ..++.++...+.. +.+.+.+.
T Consensus 223 ~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHH
Confidence 888887754 44332 3 3334444433333 55555544
|
The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.08 E-value=24 Score=35.25 Aligned_cols=186 Identities=15% Similarity=0.090 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcC--
Q 010057 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDI-FGEAKRISSMKYVFELMQE-------KGINIDAVTYTSVMHWLSNAG-- 115 (519)
Q Consensus 46 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g-- 115 (519)
...|..+++.......+.+-...=...... +....|.+.|...|....+ .| .....+-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 567888888775432222222222222223 4466789999999998877 54 3335666777777643
Q ss_pred ---ChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCCHHH
Q 010057 116 ---DVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL-NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLV--RAGKYEE 189 (519)
Q Consensus 116 ---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--~~~~~~~ 189 (519)
+.+.|..++...-..|. |+....-..+.-... ..+...|.++|...-..|.. +..-+..++-... ...+.+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 56679999988887763 344433333332222 35678999999999988743 2222222222111 2347889
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 190 ALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 190 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
|..++....+.| .|...--...+..+.. +.++.+.-.+..+.+.+..
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 999999988887 3333333334444544 7777777777777666544
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.30 E-value=31 Score=34.95 Aligned_cols=88 Identities=19% Similarity=0.155 Sum_probs=43.9
Q ss_pred HHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHh-cCC-----------HHHHHHHHHHHHHCC-----CC-CCcc
Q 010057 403 HRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFS-AGS-----------ADKALKIYKTMCRKG-----IH-PSLG 464 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~-~g~-----------~~~A~~~~~~m~~~g-----~~-p~~~ 464 (519)
.-+...|++++|..+|..+.+...-....|.++.-... ... ...|..+.+.....+ +. .+..
T Consensus 422 ~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~ 501 (613)
T PF04097_consen 422 REAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKNRE 501 (613)
T ss_dssp HHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHHH
Confidence 34667788888888888776531112233333332222 222 233444444333221 11 1234
Q ss_pred cHHHHHHH-----HHhcCChhHHHHHHHHhc
Q 010057 465 TFNVLLAG-----LEKLGRVSDAEIYRKEKK 490 (519)
Q Consensus 465 t~~~l~~~-----~~~~g~~~~a~~~~~~~~ 490 (519)
|+..|+.. +.+.|++++|.+.++++.
T Consensus 502 t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 502 TFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 55555542 367889999999888764
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.27 E-value=0.42 Score=37.59 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=61.4
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCH
Q 010057 365 ALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSA 444 (519)
Q Consensus 365 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 444 (519)
.++..+.+.+.+.....+++.+.+.+...+....+.++..|++.+..++..++++.... .-...++..|.+.|.+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-----yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-----YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-----S-CTHHHHHHHTTTSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-----cCHHHHHHHHHhcchH
Confidence 35666777888888999999999877667788999999999999988999999984433 2224555666666666
Q ss_pred HHHHHHHHHH
Q 010057 445 DKALKIYKTM 454 (519)
Q Consensus 445 ~~A~~~~~~m 454 (519)
++|.-++.++
T Consensus 87 ~~a~~Ly~~~ 96 (143)
T PF00637_consen 87 EEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHc
Confidence 6666666554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.77 E-value=17 Score=31.40 Aligned_cols=206 Identities=10% Similarity=0.071 Sum_probs=128.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHhccCChhhHHHHHHHHHhC-----CCCcCHHHHHHHHHHHHhcC
Q 010057 303 KKNLVAIDSLLSGIMDKSIQLD---SAVISTIIEVNCDHRRRDGALLAFEYSVKM-----DLNLERTAYLALIGILIKLN 374 (519)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~ 374 (519)
....++|..-|+...+....-. ......+|..+.+.+++++.++.|.++... .-.-+..+.++++...+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456777777777665432222 334556788889999999999999888653 11234566788888777777
Q ss_pred CcchHHHHHHHHHh----c-CCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-----C-CC-------chhHHHHHH
Q 010057 375 TFPKVAEIVEEMTK----A-GHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-----Q-KC-------TATYTALIG 436 (519)
Q Consensus 375 ~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~-------~~~~~~li~ 436 (519)
+.+...++|+.-++ . +-..-..+-.-|...|...|.+.+..+++.++..+ + .| ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 77766666554332 1 11112223345666777778888888887765432 1 11 346888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-CCCCcccHHHHHHH-----HHhcCChhHH-HHHHHHhcccCcccccccccchHHHHh
Q 010057 437 VYFSAGSADKALKIYKTMCRKG-IHPSLGTFNVLLAG-----LEKLGRVSDA-EIYRKEKKSIQADALSKDAVPMEEKIC 509 (519)
Q Consensus 437 ~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~l~~~-----~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~i~ 509 (519)
.|..+++-.+-..+|++...-. ..|-+.... +++- ..+.|.+++| ..+|+..+..+..+.+....++..++.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 9998888888788888776532 234444433 3333 4567888877 456666666655565555555555443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.74 E-value=1.3 Score=25.44 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998765
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.67 E-value=7.3 Score=27.65 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=19.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 155 ATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 155 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
+.+-++.+....+.|++....+-+++|-+.+++..|.++|+-++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.01 E-value=13 Score=30.87 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChHHHH
Q 010057 153 KEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA---GVQPDKAACNILIEKCCKAGETRTII 226 (519)
Q Consensus 153 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~ 226 (519)
+.|.+.|-++...+.--++..-..|...|. ..+.+++..++-...+. +-.+|+..+.+|...+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445555555555444434444444444443 45566666666555432 22455666666666666666666553
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=86.97 E-value=1.5 Score=29.59 Aligned_cols=57 Identities=12% Similarity=0.255 Sum_probs=39.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHhccc
Q 010057 435 IGVYFSAGSADKALKIYKTMCRKGIHPS--LGTFNVLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 435 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
+..| ..++.++|+..|+...+.-..|. ..++..++.+|+..|++.++..+--.-.++
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 56677889999988877632222 347778888899999998887766443333
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=86.93 E-value=1.2 Score=23.99 Aligned_cols=24 Identities=21% Similarity=0.612 Sum_probs=14.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 434 LIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 434 li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
+..+|.+.|++++|.+.|+++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 445555666666666666666654
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=86.80 E-value=2.6 Score=39.33 Aligned_cols=88 Identities=13% Similarity=0.018 Sum_probs=53.0
Q ss_pred hcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHH
Q 010057 406 GSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEI 484 (519)
Q Consensus 406 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~ 484 (519)
...|.++.+...+...... .....+...+++...+.|++++|..+-+.|....+. |+.............|-++++..
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHH
Confidence 3455555555555443332 223445666777777777888888877777766543 33333333444456677788888
Q ss_pred HHHHhcccCc
Q 010057 485 YRKEKKSIQA 494 (519)
Q Consensus 485 ~~~~~~~~~~ 494 (519)
+|++...+.|
T Consensus 413 ~wk~~~~~~~ 422 (831)
T PRK15180 413 YWKRVLLLNP 422 (831)
T ss_pred HHHHHhccCC
Confidence 8877766655
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.63 E-value=1.5 Score=38.99 Aligned_cols=48 Identities=4% Similarity=-0.094 Sum_probs=26.5
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHH
Q 010057 368 GILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAK 416 (519)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 416 (519)
+-|.++|.+++|+..|...+... +.++.++..-..+|.+..++..|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHH
Confidence 44556666666666666555432 2255555555555666555554443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.44 E-value=22 Score=31.32 Aligned_cols=139 Identities=10% Similarity=0.152 Sum_probs=95.2
Q ss_pred cCChhhHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHH
Q 010057 114 AGDVDGAVNIWEEMKL-KECYPTIVSYTAYMKILFLNDR--VKEATDVYKEMIQ-RGLPPNCYTYTVLMEYLVRAGKYEE 189 (519)
Q Consensus 114 ~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~~~~~ 189 (519)
+..+.+|+.+|+.... ..+--|..+...+++......+ ...--++.+-+.. .|-.++..+...++..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3445667777773322 2344577777778777766222 2222222222332 3467889999999999999999999
Q ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-----HHHcCCccCHHHHHHHHHHHh
Q 010057 190 ALEIFSKMQEA-GVQPDKAACNILIEKCCKAGETRTIILILRY-----MKENRLALRYPVFKEALQTFK 252 (519)
Q Consensus 190 a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~~l~~~~ 252 (519)
-.++++..... +..-|...|..+|+.-...||..-..++..+ +++.++..+...-..+-+.+.
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 99999988765 6667888999999999999999988888775 445566665554444444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.12 E-value=27 Score=31.86 Aligned_cols=126 Identities=15% Similarity=0.083 Sum_probs=71.0
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhCC-----CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHh----cCCCccch----
Q 010057 330 TIIEVNCDHRRRDGALLAFEYSVKMD-----LNLERTAYLALIGILIKLNTFPKVAEIVEEMTK----AGHSLGVY---- 396 (519)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~---- 396 (519)
++-.++...+.++++++.|+...+.- .......+..+-..|.+..|+++|.-+.....+ .++..-..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 45566666678888888888776541 112234577888888888999888776666543 22111111
Q ss_pred -hHHHHHHHHhcCCCcchHHHHhhhCCcC---CCCch----hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010057 397 -LGALLIHRLGSARRPVPAAKIFSLLPED---QKCTA----TYTALIGVYFSAGSADKALKIYKTMC 455 (519)
Q Consensus 397 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~ 455 (519)
..-.+.-++...|++-+|.+.-++..+. ..|.. ..-.+.+.|...|+.+.|+.-|+...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1122333455666666666655543322 12222 23445556666677776666665543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.00 E-value=16 Score=29.08 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=25.3
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCChhhHHH-HHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 112 SNAGDVDGAVNIWEEMKLKECYPTIVSYTA-YMKILFLNDRVKEATDVYKEMIQR 165 (519)
Q Consensus 112 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~ 165 (519)
.+.++.+.+..+++.+.-. .|....... -...+...|++.+|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445566666666655543 333222211 122244556666666666665543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.84 E-value=0.73 Score=25.42 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=15.1
Q ss_pred CCchhHHHHHHHHHhcCCHHHHH
Q 010057 426 KCTATYTALIGVYFSAGSADKAL 448 (519)
Q Consensus 426 ~~~~~~~~li~~~~~~g~~~~A~ 448 (519)
.|+.+|+.+...|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34666677777777777766664
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.79 E-value=14 Score=30.57 Aligned_cols=79 Identities=14% Similarity=0.059 Sum_probs=59.2
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCH
Q 010057 111 LSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR---GLPPNCYTYTVLMEYLVRAGKY 187 (519)
Q Consensus 111 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~~~~ 187 (519)
..+.|+ +.|.+.|-++...+.--+......|..-|. ..+.+++.+++....+. +-.+|+..+..|.+.+.+.+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344454 778888888887765545555555555554 77899999999888762 3477899999999999999999
Q ss_pred HHHH
Q 010057 188 EEAL 191 (519)
Q Consensus 188 ~~a~ 191 (519)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9875
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=85.37 E-value=16 Score=28.55 Aligned_cols=50 Identities=12% Similarity=0.142 Sum_probs=26.8
Q ss_pred ChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010057 135 TIVSYTAYMKILFLNDR-VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184 (519)
Q Consensus 135 ~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 184 (519)
+..+|++++.+.+.... ---+..+|.-|++.+.+++..-|..+|+++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44455555555544444 233445555555555566666666666655544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.31 E-value=0.87 Score=25.10 Aligned_cols=31 Identities=6% Similarity=-0.196 Sum_probs=21.5
Q ss_pred HHHHhcCCCccchhHHHHHHHHhcCCCcchHH
Q 010057 384 EEMTKAGHSLGVYLGALLIHRLGSARRPVPAA 415 (519)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 415 (519)
++.++.. +.+...+..+...|...|+.++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 456777888888888888888775
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.97 E-value=12 Score=26.90 Aligned_cols=45 Identities=11% Similarity=0.170 Sum_probs=20.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 155 ATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 155 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
..+-++.+....+.|++....+.+++|-+.+++..|.++|+-++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555555555443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.71 E-value=22 Score=29.77 Aligned_cols=84 Identities=19% Similarity=0.152 Sum_probs=41.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPPN-CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRT 224 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 224 (519)
|-..|-+.-|.-=|.+... +.|+ +..||-|.-.+...|+++.|.+.|+...+....-+-...|--|. +.-.|+++.
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHh
Confidence 4444555555544555444 3444 34566666666666666666666666665422212112222221 223456665
Q ss_pred HHHHHHHH
Q 010057 225 IILILRYM 232 (519)
Q Consensus 225 a~~~~~~~ 232 (519)
|.+=+...
T Consensus 152 Aq~d~~~f 159 (297)
T COG4785 152 AQDDLLAF 159 (297)
T ss_pred hHHHHHHH
Confidence 55544433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=84.27 E-value=33 Score=31.32 Aligned_cols=54 Identities=13% Similarity=-0.004 Sum_probs=31.7
Q ss_pred HHhccCChhhHHHHHHHHHh----CCCCcC-HHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 010057 334 VNCDHRRRDGALLAFEYSVK----MDLNLE-RTAYLALIGILIKLNTFPKVAEIVEEMT 387 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 387 (519)
++-..|....|.+.-++..+ .|-++. ......+.+.|...|+.+.|..-|+...
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 45556666666666665543 343222 1224556667777788887776666654
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.25 E-value=41 Score=32.36 Aligned_cols=165 Identities=15% Similarity=0.166 Sum_probs=88.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
..|.....+++..+..+..+.-++.+..+|..-|- +...|-.++..|..+ ..+.-..+|+++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 34555667777777777778888888888877642 566777788888777 556667777777666442 33333334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 010057 143 MKILFLNDRVKEATDVYKEMIQRGLPP-----NCYTYTVLMEYLVRAGKYEEALEIFSKMQEA-GVQPDKAACNILIEKC 216 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~ 216 (519)
..-|-+ ++.+.+..+|......=++. =...|..|... -..+.+....+...+... |...-.+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 433333 66666666666554431110 01133333321 123444444444444322 3333333444444455
Q ss_pred HhcCChHHHHHHHHHHHH
Q 010057 217 CKAGETRTIILILRYMKE 234 (519)
Q Consensus 217 ~~~g~~~~a~~~~~~~~~ 234 (519)
....++.+|.+++..+.+
T Consensus 216 s~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 216 SENENWTEAIRILKHILE 233 (711)
T ss_pred ccccCHHHHHHHHHHHhh
Confidence 555555555555554333
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=83.67 E-value=3.3 Score=22.43 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
+|..+...|.+.|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5778888999999999999999988765
|
... |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.62 E-value=6.3 Score=32.89 Aligned_cols=55 Identities=16% Similarity=0.005 Sum_probs=30.6
Q ss_pred HHHHHHhcCCCcchHHHHhhhCCc-CCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 400 LLIHRLGSARRPVPAAKIFSLLPE-DQKCTATYTALIGVYFSAGSADKALKIYKTM 454 (519)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 454 (519)
..+..+.+.+.+.+|+...+.-.+ ++.|...-..++..|+-.|+|++|..-++-.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 334455555666666666543333 3334555566666666666666665554443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.56 E-value=47 Score=32.57 Aligned_cols=410 Identities=11% Similarity=0.044 Sum_probs=213.6
Q ss_pred CHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 010057 32 DSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRF-TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSV 107 (519)
Q Consensus 32 ~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 107 (519)
+-..|..++... .+.+.+..+++.+..+ -|... -|......=.+.|..+.+.++|++-.. |++.+...|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 444566666654 3456677777777633 45544 355555555778999999999999886 466677788777
Q ss_pred HHHHH-hcCChhhHHHHHHHHHHC-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-
Q 010057 108 MHWLS-NAGDVDGAVNIWEEMKLK-ECY-PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR- 183 (519)
Q Consensus 108 i~~~~-~~g~~~~a~~~~~~m~~~-~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~- 183 (519)
+..+. ..|+.+...+.|+..... |.. .+..-|...|.--...+++.....+|+..++. | ...|+....-|.+
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHH
Confidence 66554 457788888888887765 322 24556888888888899999999999999874 2 2233333332221
Q ss_pred --c------CCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 010057 184 --A------GKYEEALEIFSKMQEA----GVQPDKAACNILIEKCCK-AGETRTIILILRYMKENRLALRYPVFKEALQT 250 (519)
Q Consensus 184 --~------~~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 250 (519)
. ...+++.++-...... ...+.......-+.--.. .+..+.+.....+... .....+.
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~----~~~~~~~----- 266 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS----IHEKVYQ----- 266 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH----HHHHHHH-----
Confidence 1 1233333332222210 000111111111110000 0111111111110000 0000000
Q ss_pred HhhcCchhHHHhhhCCCC-----CcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH
Q 010057 251 FKVADENDSLLWQVHPQF-----SPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDS 325 (519)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 325 (519)
.........+.....+ ........+. ..+..-+....+.|+.+.+.-++++..-.--.-+.
T Consensus 267 --~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql------------~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~e 332 (577)
T KOG1258|consen 267 --KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL------------KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDE 332 (577)
T ss_pred --hhHhHHHHHHhhhhhccccccccCcccHHHH------------HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHH
Confidence 0000000000000000 0000011111 12233444556677777777777765421111111
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhCCCC--cCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHH
Q 010057 326 AVISTIIEVNCDHRRRDGALLAFEYSVKMDLN--LERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIH 403 (519)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 403 (519)
.|--.+.-....|+.+-|..++....+-.++ |....+.+.+ +-..|+++.|..+++.+...- +.-...-..-+.
T Consensus 333 -fWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~ 408 (577)
T KOG1258|consen 333 -FWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY-PGLVEVVLRKIN 408 (577)
T ss_pred -HHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHh
Confidence 1222222223337778887777766654433 3333333333 344589999999999998764 222223333455
Q ss_pred HHhcCCCcchHH---HHhhhCCcCCCCchhHHHHHHHHH-----hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 010057 404 RLGSARRPVPAA---KIFSLLPEDQKCTATYTALIGVYF-----SAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK 475 (519)
Q Consensus 404 ~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~li~~~~-----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~ 475 (519)
...+.|+.+.+. +++........+....+.+.--+. -.++.+.|..++.+|.+. ++++...|..++.-+..
T Consensus 409 ~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 409 WERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred HHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 567788888887 555555444333344333333332 357899999999999877 46667777777777655
Q ss_pred cC
Q 010057 476 LG 477 (519)
Q Consensus 476 ~g 477 (519)
.+
T Consensus 488 ~~ 489 (577)
T KOG1258|consen 488 QP 489 (577)
T ss_pred CC
Confidence 55
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.44 E-value=12 Score=31.40 Aligned_cols=53 Identities=19% Similarity=0.361 Sum_probs=22.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010057 143 MKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSK 196 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 196 (519)
++.+.+.+.+.+++...++-.+.. +-|..+-..++..++-.|+|++|..-++-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 334444444444444444433321 11333334444444444444444444333
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.61 E-value=60 Score=33.06 Aligned_cols=103 Identities=10% Similarity=0.069 Sum_probs=51.6
Q ss_pred hhhhhHHhhhccCChhHHHHHHHhC-CCCCC---HHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 010057 3 DTISNVYKILKYSTWDSAQDLLKNL-PIKWD---SYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDI 75 (519)
Q Consensus 3 ~~~~~i~~~~~~~~~~~a~~~~~~~-~~~p~---~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 75 (519)
+..++|.=+++.+.+++|+.+-+.. |..|. ...+...+..+ |+++.|-...-.|. .-+..-|.--+..
T Consensus 358 ~~~Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~-----gn~~~eWe~~V~~ 432 (846)
T KOG2066|consen 358 DQEDHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML-----GNNAAEWELWVFK 432 (846)
T ss_pred CcchhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh-----cchHHHHHHHHHH
Confidence 3445566666677777777777765 44331 22233333322 55666555555553 3344455555555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010057 76 FGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN 113 (519)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 113 (519)
+...++......+ ++......+...|..++..+..
T Consensus 433 f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 433 FAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 5555444433322 3333223345566666655554
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.57 E-value=2.5 Score=21.49 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 010057 433 ALIGVYFSAGSADKALKIY 451 (519)
Q Consensus 433 ~li~~~~~~g~~~~A~~~~ 451 (519)
.+..++...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444455555555555544
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.27 E-value=1.4 Score=23.63 Aligned_cols=29 Identities=24% Similarity=0.117 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 467 NVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 467 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
-.+..++.+.|++++|.+.++++.+..|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34567788899999999999999887775
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.21 E-value=35 Score=30.13 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
+++..-..|..+|.+.+|.++-++.+... +.+...+..++..+...|+--.|..-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34556678899999999999999998875 66788888899999999997777777766643
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.17 E-value=49 Score=31.82 Aligned_cols=185 Identities=12% Similarity=0.061 Sum_probs=115.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 010057 133 YPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNIL 212 (519)
Q Consensus 133 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 212 (519)
..|....-+++..+..+..+.-++.+..+|+..| -+...|..++.+|... ..++-..+++++.+..+. |.+.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3466677888899999888988999999999864 4778899999999888 777888888888876443 44444555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccC-HHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCc
Q 010057 213 IEKCCKAGETRTIILILRYMKENRLALR-YPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLS 291 (519)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (519)
..-|-+ ++.+.+..+|..+..+-++-. ......+
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~ev-------------------------------------------- 173 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEV-------------------------------------------- 173 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHH--------------------------------------------
Confidence 555544 888888888887766433210 0000000
Q ss_pred chhHHHHHHHhcCCHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010057 292 IDQGLVLILLKKKNLVAIDSLLSGIMD-KSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGIL 370 (519)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (519)
|..+.. .-..+.+....+...+.. .|...-...+..+-.-|....++++|++++..+.+.. .-|...-..++.-+
T Consensus 174 -WeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 174 -WEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred -HHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 000000 001233333444444432 2334445556666677888889999999998888765 23444444444433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.85 E-value=23 Score=27.73 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=8.1
Q ss_pred HhcCChhhHHHHHHHHHH
Q 010057 112 SNAGDVDGAVNIWEEMKL 129 (519)
Q Consensus 112 ~~~g~~~~a~~~~~~m~~ 129 (519)
...|++++|.++|++..+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 344444444444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=81.35 E-value=4.2 Score=24.04 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=13.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 010057 212 LIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 212 li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
|..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.95 E-value=20 Score=35.01 Aligned_cols=99 Identities=16% Similarity=0.057 Sum_probs=50.7
Q ss_pred hcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 010057 372 KLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIY 451 (519)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 451 (519)
+.|+++.|.++..+. .+..-|..|.++..+.+++..|.+.|.+... |..|+-.+...|+.+....+-
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD-------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-------hhhhhhhhhhcCChhHHHHHH
Confidence 445555555444433 2334455566666666666666666655543 445555555555554444444
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 010057 452 KTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEK 489 (519)
Q Consensus 452 ~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~ 489 (519)
....+.| ..|...-+|...|+++++.+++.+-
T Consensus 716 ~~~~~~g------~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQG------KNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhhc------ccchHHHHHHHcCCHHHHHHHHHhc
Confidence 4444443 1233334555556666665555443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.92 E-value=39 Score=29.85 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=27.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 177 LMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 177 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
..+.|..+|.+.+|.++.+...... +.+...+-.|+..++..||--.+.+-++.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445555555555555555554431 234445555555555555544444444433
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.05 E-value=37 Score=28.97 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=39.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHH---HHHH-HHHh--cCChhHHHHHHHHhcccCccccccccc
Q 010057 438 YFSAGSADKALKIYKTMCRKGIHPSLGTFN---VLLA-GLEK--LGRVSDAEIYRKEKKSIQADALSKDAV 502 (519)
Q Consensus 438 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~l~~-~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~ 502 (519)
-+..+++.+|+.+|++.....+..+..-|. .++. ++++ ..+.-.+...+++.+++.|........
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREc 234 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSREC 234 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHH
Confidence 345688999999999887664332222221 1222 2222 256667788888888888876665443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.4 bits (186), Expect = 9e-15
Identities = 19/137 (13%), Positives = 44/137 (32%), Gaps = 4/137 (2%)
Query: 88 VFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI---WEEMKLKECYPTIVSYTAYMK 144
+ ++ + + A ++ + K T+ Y A M
Sbjct: 114 PSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVML 173
Query: 145 ILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALE-IFSKMQEAGVQ 203
KE V + GL P+ +Y ++ + R + +E +M + G++
Sbjct: 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLK 233
Query: 204 PDKAACNILIEKCCKAG 220
+L+ + +A
Sbjct: 234 LQALFTAVLLSEEDRAT 250
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 69.5 bits (168), Expect = 1e-12
Identities = 27/197 (13%), Positives = 63/197 (31%), Gaps = 5/197 (2%)
Query: 86 KYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145
+ + ++ + ++ +D + + A+ K
Sbjct: 77 GCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKC 136
Query: 146 LFLNDRVKEATDV---YKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGV 202
L D++ A + + Q+ Y +M R G ++E + + +++AG+
Sbjct: 137 CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL 196
Query: 203 QPDKAACNILIEKCCKAG-ETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLL 261
PD + ++ + + TI L M + L +F L + + +
Sbjct: 197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLK-LQALFTAVLLSEEDRATVLKAV 255
Query: 262 WQVHPQFSPEFISDNDA 278
+V P FS
Sbjct: 256 HKVKPTFSLPPQLPPPV 272
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 63.7 bits (153), Expect = 1e-10
Identities = 23/165 (13%), Positives = 49/165 (29%), Gaps = 4/165 (2%)
Query: 58 RSRGFNHDRFTYTTMLDIF---GEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNA 114
+ + + + V ++K + Y +VM +
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 115 GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVY-KEMIQRGLPPNCYT 173
G V + +K P ++SY A ++ + D+ + ++M Q GL
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 174 YTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCK 218
VL+ RA + ++ P + L+
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.0 bits (102), Expect = 1e-04
Identities = 21/187 (11%), Positives = 59/187 (31%), Gaps = 16/187 (8%)
Query: 301 LKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLER 360
LK K + S + + +Q++ ++S + + R +E + L
Sbjct: 44 LKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQE-- 101
Query: 361 TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSL 420
A + + + P +++ L + L A + +
Sbjct: 102 ----APGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL--LTDQLPL---AHHLLVV 152
Query: 421 LPEDQK-----CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK 475
++ Y A++ + G+ + + + + G+ P L ++ L + +
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212
Query: 476 LGRVSDA 482
+ +
Sbjct: 213 QDQDAGT 219
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 1e-07
Identities = 76/479 (15%), Positives = 134/479 (27%), Gaps = 144/479 (30%)
Query: 74 DIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECY 133
I +S +F + K + V V E L+ Y
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEM-----------------VQKFV----EEVLRINY 91
Query: 134 PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYT---------VLMEYLV-R 183
FL +K E Q + Y V +Y V R
Sbjct: 92 K------------FLMSPIKT------EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPV 243
+ L++ + E ++P K N+LI+ +G+T + L ++ +
Sbjct: 134 L---QPYLKLRQALLE--LRPAK---NVLIDGVLGSGKT---WVALDVCLSYKVQCKMD- 181
Query: 244 FKEALQTFKVADENDSL---LWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLIL 300
FK K + +++ L ++ Q P + S +D + I SI L L
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH---SIQAEL-RRL 237
Query: 301 LKKKNLVAIDSLLSGIMD-----KSIQL------------DSAVISTIIEVNCDHRRRDG 343
LK K + LL ++ K+ V + H D
Sbjct: 238 LKSKPYE--NCLL--VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 344 ALLAFEYSVKMDL----------NLERTA------YLALIGILIK--LNTF--------P 377
+ L +L R L++I I+ L T+
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 378 KVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGV 437
K+ I+E SL V A S+ P T L+ +
Sbjct: 354 KLTTIIES------SLNVLEPAEYRKMF----------DRLSVFPPSAHIP---TILLSL 394
Query: 438 YFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496
+ + + + + L+ K +S IY + K ++ +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYS----------LVEKQPKESTISIPSIYLELKVKLENEY 443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 2e-04
Identities = 29/195 (14%), Positives = 59/195 (30%), Gaps = 16/195 (8%)
Query: 4 TISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGF- 62
T N I D + L K L W + K P F ++ +
Sbjct: 155 TNGNQLAIQN----DLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFY---QAHDYL 207
Query: 63 -NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121
+ D + ++ GE + S ++ + EK + +D V ++ ++ +
Sbjct: 208 LHGDDKSLNRASELLGEIVQSSP-EFTY-ARAEKAL-VDIVRHSQHPLDEKQLAALNTEI 264
Query: 122 NIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181
+ + I Y + + E+ I L + Y +L +
Sbjct: 265 DNIVTLPELNNLSII--YQIKAVSALVKGKTDESYQAINTGID--LEMSWLNYVLLGKVY 320
Query: 182 VRAGKYEEALEIFSK 196
G EA + +
Sbjct: 321 EMKGMNREAADAYLT 335
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 519 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.69 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.6 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.57 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.52 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.52 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.52 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.51 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.5 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.49 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.48 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.48 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.48 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.46 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.46 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.44 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.41 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.41 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.41 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.39 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.37 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.36 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.36 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.35 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.33 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.33 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.31 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.26 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.25 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.21 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.2 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.16 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.13 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.12 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.1 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.05 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.98 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.96 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.94 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.93 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.91 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.89 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.84 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.83 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.82 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.81 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.81 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.78 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.77 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.76 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.75 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.75 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.74 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.74 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.73 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.73 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.72 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.72 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.69 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.69 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.68 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.65 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.63 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.62 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.6 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.59 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.56 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.55 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.55 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.54 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.51 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.49 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.48 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.48 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.46 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.45 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.45 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.41 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.41 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.4 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.39 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.38 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.38 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.38 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.38 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.36 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.36 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.36 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.35 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.33 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.32 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.29 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.27 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.27 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.27 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.26 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.26 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.25 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.24 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.23 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.22 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.19 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.18 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.17 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.16 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.16 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.15 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.15 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.13 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.13 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.12 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.11 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.11 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.11 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.1 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.1 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.09 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.05 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.03 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.03 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.03 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.99 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.96 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.96 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.93 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.91 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.85 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.8 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.78 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.78 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.74 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.73 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.71 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.68 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.67 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.65 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.63 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.58 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.58 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.57 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.56 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.55 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.51 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.47 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.46 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.4 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.32 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.3 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.15 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.14 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.14 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.13 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.12 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.11 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.01 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.98 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.81 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.69 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.57 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.5 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.38 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.36 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.35 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.19 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.18 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.06 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.04 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.91 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.85 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.71 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.29 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.2 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.59 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.06 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.75 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.47 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.96 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.93 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.64 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.13 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.09 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.52 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 90.42 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.57 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.43 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.16 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.11 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.03 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.95 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.66 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 87.93 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 87.65 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.24 | |
| 3rjo_A | 419 | Endoplasmic reticulum aminopeptidase 1; ERAP1, hyd | 86.56 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.11 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 86.02 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.51 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 81.56 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=311.56 Aligned_cols=455 Identities=10% Similarity=-0.033 Sum_probs=313.9
Q ss_pred ccCChhHHHHHHHhCCCCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010057 13 KYSTWDSAQDLLKNLPIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVF 89 (519)
Q Consensus 13 ~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 89 (519)
+.|....+...+..++. ++...|+.++..+ |++++|+++|+.+.. ..|+..++..++.+|.+.|++++|..+|
T Consensus 65 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSL-SREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCccCCCCCccccchH-HHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 34555555555555432 3556666665543 667777777766642 2456666666777777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC---------------CCCCChhhHHHHHHHHHhcCCHHH
Q 010057 90 ELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK---------------ECYPTIVSYTAYMKILFLNDRVKE 154 (519)
Q Consensus 90 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~~~~~~ 154 (519)
+.+... .++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 666433 456666777777777777777777777642211 223356667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHH--------------------------------------HHHHHHHHcCCHHHHHHHHHH
Q 010057 155 ATDVYKEMIQRGLPPNCYTYT--------------------------------------VLMEYLVRAGKYEEALEIFSK 196 (519)
Q Consensus 155 a~~~~~~m~~~g~~p~~~~~~--------------------------------------~li~~~~~~~~~~~a~~~~~~ 196 (519)
|.++|++|.+.+.. +...+. .++..|.+.|++++|.++|++
T Consensus 219 A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 219 AKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 77777776654311 222222 224455566667777777766
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccch
Q 010057 197 MQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDN 276 (519)
Q Consensus 197 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (519)
+.+. .++..++..++.+|.+.|++++|..+|+++.+.+.. +...+..+...+...++.+.....+..
T Consensus 298 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~---------- 364 (597)
T 2xpi_A 298 INGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISND---------- 364 (597)
T ss_dssp STTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHH----------
T ss_pred hhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHH----------
Confidence 6553 456667777777777777777777777776655432 233344444444444444433221110
Q ss_pred hhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCC
Q 010057 277 DAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDL 356 (519)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 356 (519)
...........+..+...|.+.|++++|..+|+.+.... ..+..+|+.++..|.+.|++++|+++|+++.+.+
T Consensus 365 -----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 437 (597)
T 2xpi_A 365 -----LVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF- 437 (597)
T ss_dssp -----HHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred -----HHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 001111233456677889999999999999999988753 2357799999999999999999999999999875
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC------CCC--c
Q 010057 357 NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED------QKC--T 428 (519)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~--~ 428 (519)
+.+..+|..++.+|.+.|++++|.++|+.+.+.. +.+..+++.++..|.+.|++++|.++|+++.+. .|+ .
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 516 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence 4577889999999999999999999999999865 457889999999999999999999999987543 455 6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
.+|..++.+|.+.|++++|+++|+++.+.+ +.+..+|..+..+|.+.|++++|.++++++.++.|+.
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 799999999999999999999999999885 5578999999999999999999999999999987764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-36 Score=297.93 Aligned_cols=423 Identities=10% Similarity=-0.069 Sum_probs=346.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010057 43 HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122 (519)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 122 (519)
.|....+...+..+. .++...|+.++..|.+.|++++|..+|+.|.+. .|+..++..++.+|.+.|++++|..
T Consensus 66 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 66 DGSFLKERNAQNTDS-----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCccCCCCCccccch-----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 355555666665442 478899999999999999999999999999864 5788999999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHHcCCH
Q 010057 123 IWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR---------------GLPPNCYTYTVLMEYLVRAGKY 187 (519)
Q Consensus 123 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------g~~p~~~~~~~li~~~~~~~~~ 187 (519)
+|+++... +++..+++.++.+|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988643 678999999999999999999999999954322 3345789999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHH--------------------------------------HHHHHHHHhcCChHHHHHHH
Q 010057 188 EEALEIFSKMQEAGVQPDKAAC--------------------------------------NILIEKCCKAGETRTIILIL 229 (519)
Q Consensus 188 ~~a~~~~~~m~~~g~~p~~~~~--------------------------------------~~li~~~~~~g~~~~a~~~~ 229 (519)
++|.++|++|.+.+.. +...+ +.++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999999876421 23333 33366777999999999999
Q ss_pred HHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHH
Q 010057 230 RYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAI 309 (519)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 309 (519)
+++.+. .++...+..+...+...++.+.....+... ..........+..++..+...|+.++|
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~A 358 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKI---------------LEIDPYNLDVYPLHLASLHESGEKNKL 358 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCCTTHHHHHHHHHHHTCHHHH
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------HHcCcccHHHHHHHHHHHHHhCCHHHH
Confidence 998775 467788888888888888776554322111 111123456677888999999999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 010057 310 DSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKA 389 (519)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 389 (519)
..+++.+.... ..+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+.+.+.
T Consensus 359 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 436 (597)
T 2xpi_A 359 YLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436 (597)
T ss_dssp HHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998543 4478889999999999999999999999998754 346778999999999999999999999999987
Q ss_pred CCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--
Q 010057 390 GHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRK----GIHPS-- 462 (519)
Q Consensus 390 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-- 462 (519)
+ +.+..++..++.+|.+.|++++|.++|+++.+. +.++.+|+.++.+|.+.|++++|+++|++|.+. +..|+
T Consensus 437 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 437 F-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp T-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred C-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 5 568889999999999999999999999998765 456889999999999999999999999999887 67787
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 463 LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 463 ~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
..+|..+..+|.+.|++++|.++++++.++.|+
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 679999999999999999999999999888654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=262.70 Aligned_cols=203 Identities=15% Similarity=0.237 Sum_probs=164.3
Q ss_pred HHHHHHHhhcCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------hhh
Q 010057 50 WLFFNWVSRSRGFNHDR-FTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD---------VDG 119 (519)
Q Consensus 50 ~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~~ 119 (519)
..+.+.+ ++.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. ++.
T Consensus 10 e~L~~~~-~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 10 ENLSRKA-KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHH-HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3344455 455555544 35788888888888888999999888888888888889988888887654 577
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 120 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
|.++|++|...|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888898899999999999899999999999888888888988999999999888999999999999888
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhh
Q 010057 200 AGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKV 253 (519)
Q Consensus 200 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 253 (519)
.|+.||..||++||.+|++.|++++|.+++++|.+.+..|+..++..++..|..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888889889999999999889999999999998888888888888888877764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=259.38 Aligned_cols=207 Identities=16% Similarity=0.239 Sum_probs=178.0
Q ss_pred hHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---------H
Q 010057 83 SSMKYVFELMQEKGINIDAV-TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR---------V 152 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---------~ 152 (519)
..++.+.+.+.+.+..+++. .++.+|.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 45566777888877766554 6899999999999999999999999999999999999999999987654 6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 153 KEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 153 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
++|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHH
Q 010057 233 KENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSL 312 (519)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 312 (519)
.+.|
T Consensus 167 ~~~G---------------------------------------------------------------------------- 170 (501)
T 4g26_A 167 VESE---------------------------------------------------------------------------- 170 (501)
T ss_dssp HHTT----------------------------------------------------------------------------
T ss_pred HhcC----------------------------------------------------------------------------
Confidence 7754
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 010057 313 LSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKL 373 (519)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (519)
+.||..+|+++|.+|++.|+.++|.++|++|++.+..|+..||+.++..|+..
T Consensus 171 --------~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 171 --------VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp --------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred --------CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 56888899999999999999999999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-27 Score=219.58 Aligned_cols=371 Identities=15% Similarity=0.092 Sum_probs=214.4
Q ss_pred HhhhccCChhHHHHHHHhC-CCCCCHHHHHHHHh----cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChh
Q 010057 9 YKILKYSTWDSAQDLLKNL-PIKWDSYTVNQVLK----THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRIS 83 (519)
Q Consensus 9 ~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~ll~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 83 (519)
..+.+.|++++|++.++++ ...|+......++. ..|++++|..+++...+.. +.+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHH
Confidence 3445556666666666554 33344333322222 2356666666665554332 445556666666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 84 SMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVKEATDVYKEM 162 (519)
Q Consensus 84 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m 162 (519)
+|...|+.+.+.... +..+|..+..++...|++++|.+.|+++.+.. |+ ...+..+...+...|++++|.+.|+++
T Consensus 85 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 85 EAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666554211 34455666666666666666666666655542 22 334455555555566666666666665
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHH
Q 010057 163 IQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYP 242 (519)
Q Consensus 163 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 242 (519)
.+.. +-+..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++...+..+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----- 234 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP----- 234 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-----
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----
Confidence 5542 2234555566666666666666666666665532 12344555555555556666666555554433211
Q ss_pred HHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010057 243 VFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQ 322 (519)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 322 (519)
T Consensus 235 -------------------------------------------------------------------------------- 234 (388)
T 1w3b_A 235 -------------------------------------------------------------------------------- 234 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHH
Q 010057 323 LDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLI 402 (519)
Q Consensus 323 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 402 (519)
.+..++..+...|...|++++|++.|+.+.+.. +.+..+|..+..++.+.|++++|.+.++.+.+.. +.+..++..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 134456666677777777777777777777654 2345567777777777777777777777777653 44556666677
Q ss_pred HHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHh
Q 010057 403 HRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLAGLEK 475 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~ 475 (519)
..+.+.|++++|.+.++++.+..| +..+|..+..+|.+.|++++|++.|+++.+. .|+ ...+..+...+..
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHH
Confidence 777777777777777766655433 3556677777777777777777777777654 333 3444444444433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-26 Score=216.90 Aligned_cols=359 Identities=14% Similarity=0.061 Sum_probs=284.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010057 43 HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122 (519)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 122 (519)
.|++++|.+.++.+.+.. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.|++++|..
T Consensus 12 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 378888888887776443 4456667777777788888888888887777653 3367788888888888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 010057 123 IWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGV 202 (519)
Q Consensus 123 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 202 (519)
.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|+++.+..
T Consensus 89 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 888877652 2245567888888888888888888888887752 2234566667777777888888888888877652
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhH
Q 010057 203 QPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFV 282 (519)
Q Consensus 203 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (519)
+-+..+|..+...+.+.|++++|...|+++.+.++
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--------------------------------------------- 200 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP--------------------------------------------- 200 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------------------------------------
Confidence 22456777888888888888888888877665332
Q ss_pred HhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHH
Q 010057 283 TTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTA 362 (519)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (519)
.+...+..+...+...|++++|+..|++..+.. +.+..+
T Consensus 201 ----------------------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 201 ----------------------------------------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp ----------------------------------------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred ----------------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 134456677778889999999999999988764 335678
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhc
Q 010057 363 YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSA 441 (519)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~ 441 (519)
+..+..++.+.|++++|.+.++.+.+.. +.++..+..+...+.+.|++++|.+.|+++.+. +++..+|+.+...+.+.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999999875 445678899999999999999999999988765 45678999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 442 GSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 442 g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
|++++|++.|+++.+.. +.+..++..+..++.+.|++++|...++++.++.|+
T Consensus 319 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999998763 445778999999999999999999999999988775
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-22 Score=199.03 Aligned_cols=193 Identities=12% Similarity=0.046 Sum_probs=109.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcch
Q 010057 299 ILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPK 378 (519)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 378 (519)
.+...|+++.|...++....... .+...+..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHH
Confidence 34444444444445544443321 133455555566666666666666666666543 2234455566666666666666
Q ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-------chhHHHHHHHHHh---cCCHHHHH
Q 010057 379 VAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-------TATYTALIGVYFS---AGSADKAL 448 (519)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~li~~~~~---~g~~~~A~ 448 (519)
|...+..+.+.. +.+...+..+...+...|++++|.+.++.+....|+ ...|..+..+|.. .|++++|+
T Consensus 357 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 357 CETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 666666666543 234455566666666666666666666655432111 2256666666666 66666666
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 449 KIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 449 ~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
+.|+++.+.. +.+..++..+...|.+.|++++|...++++.++.|+
T Consensus 436 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 436 NLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 6666666552 233455566666666666666666666666665553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-22 Score=190.57 Aligned_cols=341 Identities=14% Similarity=0.123 Sum_probs=243.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
+.+...+..+...+.+.|++++|..+|+.+.+... .+..+|..+..++...|++++|...|+++.+.+. .+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence 45667788888888888889999888888887532 3678888888888888889999888888877642 257788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 010057 143 MKILFLNDRVKEATDVYKEMIQRGLPPNC----YTYTVL------------MEYLVRAGKYEEALEIFSKMQEAGVQPDK 206 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 206 (519)
..+|.+.|++++|.+.|+++.+. .|+. ..+..+ ...+...|++++|...|+.+.+.. +.+.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 88888888999998888888875 3443 455544 334778888888888888887753 3366
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhcc
Q 010057 207 AACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDI 286 (519)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (519)
.++..+..+|.+.|++++|...++.+.+...
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------------------------------------- 208 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKN------------------------------------------------- 208 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-------------------------------------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------------------------------------
Confidence 7888888888888888888888887665321
Q ss_pred CCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHH
Q 010057 287 EGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLAL 366 (519)
Q Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (519)
.+..++..+...|...|++++|+..|+.+.+.. +.+...+..+
T Consensus 209 ------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~ 251 (450)
T 2y4t_A 209 ------------------------------------DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHY 251 (450)
T ss_dssp ------------------------------------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ------------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 133445556666666666666666666666442 1122223333
Q ss_pred ------------HHHHHhcCCcchHHHHHHHHHhcCCCcc-----chhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCc
Q 010057 367 ------------IGILIKLNTFPKVAEIVEEMTKAGHSLG-----VYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCT 428 (519)
Q Consensus 367 ------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~ 428 (519)
...+.+.|++++|...+..+.+.. |+ ...+..+...+.+.|++++|.+.++.+.+. +.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 329 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 677788888888888888887753 33 336677778888888888888888876554 3357
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHH------------HHHhcC-----ChhHHHHHHHH-h
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLA------------GLEKLG-----RVSDAEIYRKE-K 489 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~------------~~~~~g-----~~~~a~~~~~~-~ 489 (519)
..|..+..+|...|++++|.+.|+++.+. .|+ ...+..+.. .|...| ..+++.+.+++ .
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~ 407 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLA 407 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHH
Confidence 78888888888888888888888888875 454 344444442 233444 55677777775 6
Q ss_pred cccCccccc
Q 010057 490 KSIQADALS 498 (519)
Q Consensus 490 ~~~~~~~~~ 498 (519)
.+..|+...
T Consensus 408 l~~~pd~~~ 416 (450)
T 2y4t_A 408 LQWHPDNFQ 416 (450)
T ss_dssp HHSCGGGCC
T ss_pred HHhCCCCCC
Confidence 677777554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-21 Score=185.03 Aligned_cols=211 Identities=10% Similarity=0.042 Sum_probs=167.0
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHh---cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010057 19 SAQDLLKNL-PIKWD-SYTVNQVLK---THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQ 93 (519)
Q Consensus 19 ~a~~~~~~~-~~~p~-~~~~~~ll~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 93 (519)
.+...|.+. ...|+ ...+..+.. ..|++++|+++|+.+.+.. +.+..+|..+...+...|++++|...|+.+.
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444 33343 344444332 3499999999999987543 5678999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-h---hhHHHHH------------HHHHhcCCHHHHHH
Q 010057 94 EKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT-I---VSYTAYM------------KILFLNDRVKEATD 157 (519)
Q Consensus 94 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~---~~~~~li------------~~~~~~~~~~~a~~ 157 (519)
+.+.. +..++..+..+|.+.|++++|...|+++.+.. |+ . ..+..+. ..+...|++++|..
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 87543 68899999999999999999999999998763 43 3 5665554 44889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 158 VYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 158 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
.|+++.+.. +.+..++..+..+|.+.|++++|.++|+.+.+.. +.+..++..+..+|...|++++|...++.+.+..
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999863 4478899999999999999999999999998753 3467899999999999999999999999988643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-21 Score=190.42 Aligned_cols=401 Identities=7% Similarity=-0.037 Sum_probs=296.1
Q ss_pred hhhhHHhhhccCChhHHHHHHHhC-CCCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 010057 4 TISNVYKILKYSTWDSAQDLLKNL-PIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEA 79 (519)
Q Consensus 4 ~~~~i~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 79 (519)
+......+.+.|++++|+..|+++ ...|++..+..+...+ |++++|++.|+.+.+.. +.+...|..+..++.+.
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHH
Confidence 345556677888999999999887 4457777766655444 88999999888886543 55677888888888899
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH---------------------------------
Q 010057 80 KRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEE--------------------------------- 126 (519)
Q Consensus 80 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------------------------------- 126 (519)
|++++|...|+.+.+.+. ++......++..+........+.+.+..
T Consensus 87 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 999999999988887653 2333333333333332222222222211
Q ss_pred --HHHCCC---------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHHHHH
Q 010057 127 --MKLKEC---------YPTIVSYTAYMKILFL---NDRVKEATDVYKEMIQ-----RGL--------PPNCYTYTVLME 179 (519)
Q Consensus 127 --m~~~~~---------~p~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~--------~p~~~~~~~li~ 179 (519)
+..... +.+...+......+.. .|++++|...|+++.+ ..- +.+..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 111000 1124455555554554 8999999999999887 311 123567888889
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhH
Q 010057 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDS 259 (519)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 259 (519)
.+...|++++|...|+.+.+.. |+..++..+..++...|+++.|...++.+.+.....
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------- 303 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN-------------------- 303 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC--------------------
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC--------------------
Confidence 9999999999999999998764 447788899999999999999999999988754321
Q ss_pred HHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccC
Q 010057 260 LLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHR 339 (519)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 339 (519)
...+..+...+...|+++.|...+......... +...+..+...+...|
T Consensus 304 ------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 352 (514)
T 2gw1_A 304 ------------------------------SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYREN 352 (514)
T ss_dssp ------------------------------THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTT
T ss_pred ------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcC
Confidence 113344566778889999999999988765433 5667888999999999
Q ss_pred ChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC-Ccc----chhHHHHHHHHhc---CCCc
Q 010057 340 RRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH-SLG----VYLGALLIHRLGS---ARRP 411 (519)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~g~~ 411 (519)
++++|+..|+.+.+.. +.+...+..+...+...|++++|...+..+.+... .++ ...+..+...+.. .|++
T Consensus 353 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 353 KFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred CHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 9999999999998764 33567888999999999999999999999986431 112 3388889999999 9999
Q ss_pred chHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 010057 412 VPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSL 463 (519)
Q Consensus 412 ~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 463 (519)
++|.+.++.+.... .+..+|..+..+|.+.|++++|.+.|++..+. .|+.
T Consensus 432 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 99999999876653 45778899999999999999999999999987 4553
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-21 Score=189.72 Aligned_cols=387 Identities=10% Similarity=0.018 Sum_probs=209.8
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 123 (519)
|++++|++.|+.+.+.. +.+...|..+...|.+.|++++|.+.++.+.+.+.. +...+..+..++...|++++|...
T Consensus 39 g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp TCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666666666555332 345555666666666666666666666665554322 455555566666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHH-------------------------
Q 010057 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR------GLPPNCY------------------------- 172 (519)
Q Consensus 124 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~------------------------- 172 (519)
|+.+ .. .|+. .+..+..+...+....|...++++... ...|+..
T Consensus 116 ~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 116 LSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 6422 11 1111 111122233333334444444444321 0011111
Q ss_pred -----HHHHHHHHHH--------HcCCHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 173 -----TYTVLMEYLV--------RAGKYEEALEIFSKMQEAGVQPD--------KAACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 173 -----~~~~li~~~~--------~~~~~~~a~~~~~~m~~~g~~p~--------~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
....+...+. ..+++++|..+++.+.+. .|+ ..++..+...+...|+++.|...++.
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 268 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 1111111111 123566666666666653 222 22345555566666666666666666
Q ss_pred HHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHH
Q 010057 232 MKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDS 311 (519)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 311 (519)
..+.... .. .+..+...+...|+++.|..
T Consensus 269 ~~~~~~~--~~-------------------------------------------------~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 269 SINLHPT--PN-------------------------------------------------SYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHCCC--HH-------------------------------------------------HHHHHHHHTCCSSCCHHHHH
T ss_pred HHhcCCC--ch-------------------------------------------------HHHHHHHHHHHhcCHHHHHH
Confidence 6554322 11 11123333445566666666
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC
Q 010057 312 LLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH 391 (519)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (519)
.+........ .+..++..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...++.+.+..
T Consensus 298 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 374 (537)
T 3fp2_A 298 FFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF- 374 (537)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 6666554432 245566666777777777777777777776654 2234566677777777777777777777777654
Q ss_pred CccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-------CchhHHHHHHHHHhc----------CCHHHHHHHHHHH
Q 010057 392 SLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-------CTATYTALIGVYFSA----------GSADKALKIYKTM 454 (519)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~li~~~~~~----------g~~~~A~~~~~~m 454 (519)
+.+...+..+...+...|++++|.+.|+++.+..| ....+..+..+|.+. |++++|+..|++.
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 34555667777777777777777777776543311 112234445566666 7777777777777
Q ss_pred HHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 455 CRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 455 ~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.+.. +.+...+..+..+|.+.|++++|.+.++++.++.|+
T Consensus 455 ~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 455 CELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 7663 334566777777777777777777777777776654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-18 Score=161.01 Aligned_cols=169 Identities=9% Similarity=0.011 Sum_probs=122.1
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHH----
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGA---- 399 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 399 (519)
+...+..+...+...|++++|+..++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+...+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~ 230 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 230 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHH
Confidence 34556666667777778888888887777654 4456667777777888888888888888777654 22222222
Q ss_pred --------HHHHHHhcCCCcchHHHHhhhCCcCCCCc-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 010057 400 --------LLIHRLGSARRPVPAAKIFSLLPEDQKCT-----ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTF 466 (519)
Q Consensus 400 --------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 466 (519)
.+...+.+.|++++|.+.++.+.+..|+. ..|..+..+|.+.|++++|++.+++..+.. +.+..++
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 309 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHH
Confidence 22555778888888888888776544432 235567788888999999999999888763 3467788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 467 NVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 467 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
..+...+...|++++|...++++.++.|+
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 88888889999999999999998888765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-18 Score=156.95 Aligned_cols=314 Identities=14% Similarity=0.115 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
+..+..+...+...|++++|...|+.+.+.... +..++..+...+...|++++|...|++..+.. +.+...|..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 344555556666666666666666666554322 45566666666666666666666666665542 1144556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPP----NCYTYTVL------------MEYLVRAGKYEEALEIFSKMQEAGVQPDKAAC 209 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 209 (519)
+...|++++|...|++..+. .| +...+..+ ...+...|++++|.+.++.+.+.. +.+..++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 66666666666666666653 23 22233333 355566666666666666665542 2344556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCC
Q 010057 210 NILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGP 289 (519)
Q Consensus 210 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (519)
..+..++...|+++.|...++...+...
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------------------------------------------- 185 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKS---------------------------------------------------- 185 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCS----------------------------------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC----------------------------------------------------
Confidence 6666666666666666666665544321
Q ss_pred CcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHH------
Q 010057 290 LSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAY------ 363 (519)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------ 363 (519)
.+...+..+...+...|++++|...|+...+... .+...+
T Consensus 186 ---------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~ 231 (359)
T 3ieg_A 186 ---------------------------------DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQV 231 (359)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred ---------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHH
Confidence 1223344444445555555555555555544321 111111
Q ss_pred ------HHHHHHHHhcCCcchHHHHHHHHHhcCCCccc----hhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHH
Q 010057 364 ------LALIGILIKLNTFPKVAEIVEEMTKAGHSLGV----YLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYT 432 (519)
Q Consensus 364 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 432 (519)
..+...+.+.|++++|...++.+.+... .+. ..+..+...+...|++++|.+.++...+.. .++..|.
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 310 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK 310 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHH
Confidence 2235567778888888888888877542 122 224446677888888888888888776643 3577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHH
Q 010057 433 ALIGVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLAGL 473 (519)
Q Consensus 433 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~ 473 (519)
.+..+|.+.|++++|.+.|++..+. .|+ ...+..+..+.
T Consensus 311 ~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 311 DRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 9999999999999999999999877 455 44444444443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-18 Score=169.59 Aligned_cols=377 Identities=11% Similarity=0.027 Sum_probs=275.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
...|..+...+.+.|++++|...|+.+.+.... +...|..+..++...|++++|.+.|++..+.. +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 456788888999999999999999999987533 78899999999999999999999999998874 3367889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHH------
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA------GVQPDKAACNILI------ 213 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~li------ 213 (519)
+...|++++|...|+.+.. .|+. ....+..+...+...+|...++.+... ...|+.......+
T Consensus 103 ~~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSL---NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHHhc---CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999964322 2332 222344555666677888888887442 2233333322211
Q ss_pred ------------------------HHHH--------hcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHH
Q 010057 214 ------------------------EKCC--------KAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLL 261 (519)
Q Consensus 214 ------------------------~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 261 (519)
..+. ..|++++|..+++.+.+........... ..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~-~~------------- 243 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN-AA------------- 243 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHH-HH-------------
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHH-HH-------------
Confidence 1111 1134555666665555433221100000 00
Q ss_pred hhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCCh
Q 010057 262 WQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRR 341 (519)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 341 (519)
..+..+...+...|+++.|...+....... |+...+..+...+...|++
T Consensus 244 -----------------------------~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 244 -----------------------------LALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENS 292 (537)
T ss_dssp -----------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCC
T ss_pred -----------------------------HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCH
Confidence 022334557788999999999999988765 4477888999999999999
Q ss_pred hhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhC
Q 010057 342 DGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLL 421 (519)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (519)
++|+..|+.+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++
T Consensus 293 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 293 QEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998765 3467789999999999999999999999999865 456778889999999999999999999988
Q ss_pred CcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhc----------CChhHHHHH
Q 010057 422 PEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIH-PS----LGTFNVLLAGLEKL----------GRVSDAEIY 485 (519)
Q Consensus 422 ~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~l~~~~~~~----------g~~~~a~~~ 485 (519)
.+.. .+...|..+...|...|++++|++.|+++.+..-. ++ ...+.....++... |++++|...
T Consensus 371 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 371 KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 7654 45778999999999999999999999998876311 11 11133445667777 999999999
Q ss_pred HHHhcccCccc
Q 010057 486 RKEKKSIQADA 496 (519)
Q Consensus 486 ~~~~~~~~~~~ 496 (519)
++++.+..|+.
T Consensus 451 ~~~a~~~~p~~ 461 (537)
T 3fp2_A 451 LTKACELDPRS 461 (537)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHHhCCCC
Confidence 99999887753
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-17 Score=153.34 Aligned_cols=270 Identities=11% Similarity=-0.046 Sum_probs=171.5
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010057 99 IDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178 (519)
Q Consensus 99 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 178 (519)
.+...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 345566667777777777777777777776653 2245566667777777777777777777777652 23556677777
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCch
Q 010057 179 EYLVRAG-KYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADEN 257 (519)
Q Consensus 179 ~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 257 (519)
..+...| ++++|...|+...+.. +.+...+..+..++...|++++|...++...+...
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------------------- 156 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-------------------- 156 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT--------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc--------------------
Confidence 7777777 7777777777776643 22455677777777777777777777776555221
Q ss_pred hHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Q 010057 258 DSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCD 337 (519)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (519)
.+...+..+...|..
T Consensus 157 -----------------------------------------------------------------~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 157 -----------------------------------------------------------------GCHLPMLYIGLEYGL 171 (330)
T ss_dssp -----------------------------------------------------------------TCSHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------------ccHHHHHHHHHHHHH
Confidence 123445567777888
Q ss_pred cCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC--------CccchhHHHHHHHHhcCC
Q 010057 338 HRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH--------SLGVYLGALLIHRLGSAR 409 (519)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g 409 (519)
.|++++|+..|+.+.+.. +.+...+..+...+...|++++|...++.+.+..- +.....+..+...+...|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 888888888888887764 34566777888888888888888888888775310 122334444555555555
Q ss_pred CcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 410 RPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 410 ~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
++++|.+.+++..+. +.+...|..+..+|.+.|++++|.+.|++..+.
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 555555555444332 223444455555555555555555555554433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-17 Score=149.34 Aligned_cols=293 Identities=8% Similarity=-0.074 Sum_probs=194.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
+.+...+..+...+...|++++|.++|+.+.+.... +...+..++..+...|++++|...++++.+.. +.+...|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 445555666667777777777777777777665322 44455566667777777777777777776652 2245667777
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010057 143 MKILFLND-RVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 143 i~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 221 (519)
...+...| ++++|.+.|++..+.. +.+...|..+...+...|++++|...++...+... .+...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence 77777777 7777777777777653 22456677777777777777777777777766532 234556667777777777
Q ss_pred hHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHH
Q 010057 222 TRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILL 301 (519)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (519)
+++|...++...+....
T Consensus 175 ~~~A~~~~~~al~~~~~--------------------------------------------------------------- 191 (330)
T 3hym_B 175 SKLAERFFSQALSIAPE--------------------------------------------------------------- 191 (330)
T ss_dssp HHHHHHHHHHHHTTCTT---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCC---------------------------------------------------------------
Confidence 77777777766553211
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCC--------CCcCHHHHHHHHHHHHhc
Q 010057 302 KKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMD--------LNLERTAYLALIGILIKL 373 (519)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 373 (519)
+...+..+...+...|++++|+..|+.+.+.. .+.....+..+...+...
T Consensus 192 ----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 192 ----------------------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred ----------------------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 23344555555666666666666666665431 123345677788888888
Q ss_pred CCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHH-HhcCCHH
Q 010057 374 NTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVY-FSAGSAD 445 (519)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~-~~~g~~~ 445 (519)
|++++|...++...+.. +.+...+..+...+...|++++|.+.|+++.+..| +...+..+..++ ...|+.+
T Consensus 250 g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 250 KKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred cCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 88888888888887754 34667777888888888888888888888777644 466777777777 3455543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.9e-20 Score=179.64 Aligned_cols=119 Identities=15% Similarity=0.120 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHH---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010057 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKL---KECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVL 177 (519)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 177 (519)
..|||+||++|++.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34677777777777777777777766653 366777777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 010057 178 MEYLVRAGK-YEEALEIFSKMQEAGVQPDKAACNILIEKCCKA 219 (519)
Q Consensus 178 i~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 219 (519)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 777777776 366777777777777777777777766555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-15 Score=142.79 Aligned_cols=354 Identities=12% Similarity=-0.003 Sum_probs=234.5
Q ss_pred CCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCC
Q 010057 63 NHDRFTYTTMLDIFGE----AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN----AGDVDGAVNIWEEMKLKECYP 134 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p 134 (519)
..+...+..+...|.. .+++++|...|+...+.| +...+..|-..|.. .++.++|.+.|++..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3456666667777766 677777777777777653 55667777777777 777777887777777664
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCH
Q 010057 135 TIVSYTAYMKILFL----NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR----AGKYEEALEIFSKMQEAGVQPDK 206 (519)
Q Consensus 135 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~ 206 (519)
+...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.++|+...+.| +.
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~ 183 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NV 183 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55666667777766 677778888877777654 55666677777766 667778888877777654 56
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhH
Q 010057 207 AACNILIEKCCK----AGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFV 282 (519)
Q Consensus 207 ~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (519)
..+..|...|.. .+++++|...|+...+.+...
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~------------------------------------------- 220 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDEL------------------------------------------- 220 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH-------------------------------------------
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHH-------------------------------------------
Confidence 667777777776 677777777777766644210
Q ss_pred HhccCCCCcchhHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc----cCChhhHHHHHHHHHhC
Q 010057 283 TTDIEGPLSIDQGLVLILLK----KKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCD----HRRRDGALLAFEYSVKM 354 (519)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~ 354 (519)
....+...+.. .++.++|...++.....+ +...+..+...|.. .++.++|+..|+...+.
T Consensus 221 ---------a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 221 ---------GQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp ---------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred ---------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 11112222332 456666766666665543 33344444445554 66777777777777765
Q ss_pred CCCcCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCC---CcchHHHHhhhCCcCCC
Q 010057 355 DLNLERTAYLALIGILIKL-----NTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSAR---RPVPAAKIFSLLPEDQK 426 (519)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 426 (519)
+ +...+..+...|... +++++|...++...+.+ +...+..+...|...| +.++|.+.|++..+. .
T Consensus 289 ~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~ 361 (490)
T 2xm6_A 289 G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-G 361 (490)
T ss_dssp T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-T
T ss_pred C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-C
Confidence 4 334555666666665 77777777777777765 2344555666665545 567777777766554 3
Q ss_pred CchhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHhcccC
Q 010057 427 CTATYTALIGVYFS----AGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK----LGRVSDAEIYRKEKKSIQ 493 (519)
Q Consensus 427 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 493 (519)
++..+..|...|.. .+++++|++.|++..+.| ++..+..+...|.+ .+++++|..++++..+..
T Consensus 362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 46677777777777 677788888887777765 35566667777766 677788888877776665
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-18 Score=157.93 Aligned_cols=329 Identities=12% Similarity=0.007 Sum_probs=215.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH-HHHHHHHCCC---CCChhhHHHHHHHHHhcCCHHHH
Q 010057 80 KRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN-IWEEMKLKEC---YPTIVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 80 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~m~~~~~---~p~~~~~~~li~~~~~~~~~~~a 155 (519)
+.++.+...|+.+.+.+ |+ ++.-.|++++|.. .|++...... ..+...+..+...+.+.|++++|
T Consensus 15 ~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 83 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRD--AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNA 83 (368)
T ss_dssp ------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHcCC--ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHH
Confidence 44555555666665542 11 2233478888887 7776543311 11356788888999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
...|+++.+.. +.+..++..+..++...|++++|...|+.+.+.. +.+..++..+..+|...|++++|...++.+.+.
T Consensus 84 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 84 VLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp HHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999863 4477788999999999999999999999998764 346778999999999999999999999988875
Q ss_pred CCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHH
Q 010057 236 RLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSG 315 (519)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (519)
.......... . +...
T Consensus 162 ~~~~~~~~~~--------------------------------------------------~-------~~~~-------- 176 (368)
T 1fch_A 162 TPAYAHLVTP--------------------------------------------------A-------EEGA-------- 176 (368)
T ss_dssp STTTGGGCC-----------------------------------------------------------------------
T ss_pred CcCcHHHHHH--------------------------------------------------H-------HHHh--------
Confidence 4321100000 0 0000
Q ss_pred HHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCcc
Q 010057 316 IMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNL-ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLG 394 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (519)
....+. ..+.. +..+...|++++|+..|+.+.+..... +..++..+...+.+.|++++|...++.+.+.. +.+
T Consensus 177 ---~~~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 177 ---GGAGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred ---hhhccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 000000 00111 112225677888888888777654221 46778888888888888888888888887764 345
Q ss_pred chhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------Cc
Q 010057 395 VYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP----------SL 463 (519)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------~~ 463 (519)
...+..+...+...|++++|.+.|+++.+.. .+...|..+..+|.+.|++++|++.|+++.+..... ..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 6677888888888888888888888776543 457789999999999999999999999988752111 15
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhccc
Q 010057 464 GTFNVLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 464 ~t~~~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
.+|..+..+|...|++++|..++++..+.
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 78999999999999999999998765443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-17 Score=153.94 Aligned_cols=282 Identities=10% Similarity=-0.014 Sum_probs=178.5
Q ss_pred ccCChhHHHHHHHhC-CCCCCHHHHHHHHhcCCChHHHHH-HHHHHhhcCCCCC--CHHHHHHHHHHHHhcCChhHHHHH
Q 010057 13 KYSTWDSAQDLLKNL-PIKWDSYTVNQVLKTHPPMEKAWL-FFNWVSRSRGFNH--DRFTYTTMLDIFGEAKRISSMKYV 88 (519)
Q Consensus 13 ~~~~~~~a~~~~~~~-~~~p~~~~~~~ll~~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~ 88 (519)
..+.|+.+...|+.+ ...|+... ..+++++|++ .|+...+...-.| +...+..+...+.+.|++++|...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 86 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDAEAHP------WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLL 86 (368)
T ss_dssp ---------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHcCCchhhH------HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 445666677777766 22233211 1267888888 7775543221122 345577888888999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 010057 89 FELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLP 168 (519)
Q Consensus 89 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 168 (519)
|+.+.+.... +..++..+..++...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+++......
T Consensus 87 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (368)
T 1fch_A 87 FEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 164 (368)
T ss_dssp HHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 9999887533 67788888899999999999999999888764 336778888889999999999999999988875321
Q ss_pred CCHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 169 PNCYTYTV---------------LMEYLVRAGKYEEALEIFSKMQEAGVQ-PDKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 169 p~~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
+...+.. .+..+...|++++|...|+.+.+.... ++..++..+..+|.+.|++++|...++.+
T Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 165 -YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp -TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2222211 233333777888888888887764211 14667777778888888888888777766
Q ss_pred HHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHH
Q 010057 233 KENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSL 312 (519)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 312 (519)
.+...
T Consensus 244 l~~~~--------------------------------------------------------------------------- 248 (368)
T 1fch_A 244 LSVRP--------------------------------------------------------------------------- 248 (368)
T ss_dssp HHHCT---------------------------------------------------------------------------
T ss_pred HHhCc---------------------------------------------------------------------------
Confidence 55321
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 010057 313 LSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKA 389 (519)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 389 (519)
.+...+..+...+...|++++|+..|+.+.+.. +.+...+..+..++.+.|++++|...++.+.+.
T Consensus 249 ----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 249 ----------NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 134456666777777888888888888877654 345667778888888888888888888887653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-15 Score=147.68 Aligned_cols=409 Identities=10% Similarity=0.081 Sum_probs=266.2
Q ss_pred CHHHHHHHHhc--CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010057 32 DSYTVNQVLKT--HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMH 109 (519)
Q Consensus 32 ~~~~~~~ll~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 109 (519)
+...|..++.. .|++++|..+|+.+.+. ++.+...|...+..+.+.|++++|..+|++..+. .|+...|...+.
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 44556555543 47888888888888643 3567778888888888888888888888888876 367777777765
Q ss_pred HH-HhcCChhhHHH----HHHHHHHC-CCCC-ChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHH
Q 010057 110 WL-SNAGDVDGAVN----IWEEMKLK-ECYP-TIVSYTAYMKILFL---------NDRVKEATDVYKEMIQRGLPPNCYT 173 (519)
Q Consensus 110 ~~-~~~g~~~~a~~----~~~~m~~~-~~~p-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~~ 173 (519)
.. ...|+.+.|.+ +|++.... |..| +...|...+....+ .|+++.|..+|++..+....+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 34577776665 66655432 4443 45567776665544 6778888888888887311111233
Q ss_pred HHHHHHHHH-------------HcCCHHHHHHHHHHHHH------c---CCCCC--------HHHHHHHHHHHHhc----
Q 010057 174 YTVLMEYLV-------------RAGKYEEALEIFSKMQE------A---GVQPD--------KAACNILIEKCCKA---- 219 (519)
Q Consensus 174 ~~~li~~~~-------------~~~~~~~a~~~~~~m~~------~---g~~p~--------~~~~~~li~~~~~~---- 219 (519)
|........ +.++++.|..++..+.. . .+.|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 333222110 12345555555554321 0 02232 12333333221111
Q ss_pred CCh----HHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhH
Q 010057 220 GET----RTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQG 295 (519)
Q Consensus 220 g~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (519)
++. ..+..+|++.....+ ....++..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~p--------------------------------------------------~~~~~w~~ 277 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVLG--------------------------------------------------HHPDIWYE 277 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHT--------------------------------------------------TCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhCC--------------------------------------------------CCHHHHHH
Confidence 111 133344444333211 11223333
Q ss_pred HHHHHHh-------cCCHH-------HHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcC-H
Q 010057 296 LVLILLK-------KKNLV-------AIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE-R 360 (519)
Q Consensus 296 l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 360 (519)
....+.. .|+++ .|..++++....-.+-+...+..+...+...|++++|..+|+.+.+. .|+ .
T Consensus 278 ~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 355 (530)
T 2ooe_A 278 AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDP 355 (530)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCH
T ss_pred HHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCc
Confidence 3444433 67776 88888888765222335778889999999999999999999999985 343 2
Q ss_pred -HHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHH-HhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHH
Q 010057 361 -TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHR-LGSARRPVPAAKIFSLLPED-QKCTATYTALIGV 437 (519)
Q Consensus 361 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~ 437 (519)
..|...+..+.+.|++++|.++|....+.. +.+...+...... +...|+.++|..+|+...+. +.++..|..++..
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 478888888899999999999999999864 2233333322222 34689999999999987665 3457899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCC--cccHHHHHHHHHhcCChhHHHHHHHHhcccCcccc
Q 010057 438 YFSAGSADKALKIYKTMCRKGI-HPS--LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADAL 497 (519)
Q Consensus 438 ~~~~g~~~~A~~~~~~m~~~g~-~p~--~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 497 (519)
+.+.|+.++|..+|++....+- .|+ ...|...+......|+.+.+..+.+++.+..|+..
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 9999999999999999998742 222 23677777777889999999999999999988533
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-19 Score=176.59 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQE---KGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
..|||++|.+|++.|++++|.++|+.|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHH
Q 010057 143 MKILFLNDR-VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPD------KAACNILIEK 215 (519)
Q Consensus 143 i~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~ 215 (519)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.+++.+.+. .+++..+++ .-++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 478999999999999999999999999766554 333344443 2244443 4455566667
Q ss_pred HHhcC
Q 010057 216 CCKAG 220 (519)
Q Consensus 216 ~~~~g 220 (519)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 76655
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=5e-18 Score=154.64 Aligned_cols=168 Identities=13% Similarity=0.125 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010057 34 YTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN 113 (519)
Q Consensus 34 ~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 113 (519)
...+.+|...|++++|.++++.+. .| .+|..+..++.+.|++++|.+.|... +|..+|..++.++..
T Consensus 7 ~a~~~ll~~~~~ld~A~~fae~~~-----~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 7 SAVQVLIEHIGNLDRAYEFAERCN-----EP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHhCC-----Ch--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHh
Confidence 344556666677777777777652 22 36777777777777777777777431 366677777777777
Q ss_pred cCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010057 114 AGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEI 193 (519)
Q Consensus 114 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 193 (519)
.|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+
T Consensus 74 ~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 74 SGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -------------------------------------CHHHHTTTTT-------CC----------------CTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777766555543 3456667777777777777777776663 25666777777777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 194 FSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 194 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
|..+ ..|..++.++.+.|+++.|.+.++.+
T Consensus 145 Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 145 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp HHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 7755 25677777777777777777666654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.1e-18 Score=156.39 Aligned_cols=279 Identities=10% Similarity=-0.004 Sum_probs=209.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010057 135 TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214 (519)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 214 (519)
+...+..+...+.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888999999999999999999998863 3478889999999999999999999999998763 335778999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchh
Q 010057 215 KCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQ 294 (519)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (519)
+|...|++++|...++.+.+.... .... ..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~--~~~~------------------------------------------------~~ 171 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPK--YKYL------------------------------------------------VK 171 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHH--HHCC--------------------------------------------------
T ss_pred HHHccccHHHHHHHHHHHHHhCcc--chHH------------------------------------------------Hh
Confidence 999999999999999988774321 0000 00
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCC-cCHHHHHHHHHHHHhc
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLN-LERTAYLALIGILIKL 373 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 373 (519)
........+..+...+...|++++|+..|+++.+.... ++...+..+...+...
T Consensus 172 -------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 172 -------------------------NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred -------------------------hhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 00011223444556677788888888888888776422 2567788888888888
Q ss_pred CCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHH
Q 010057 374 NTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYK 452 (519)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 452 (519)
|++++|...++.+.+.. +.+..++..+..+|...|++++|.+.|+++.+..| +..+|..+..+|.+.|++++|++.|+
T Consensus 227 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 305 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFL 305 (365)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999888888764 45677888888888899999999999888766544 47789999999999999999999999
Q ss_pred HHHHCCC---C--------CCcccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 453 TMCRKGI---H--------PSLGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 453 ~m~~~g~---~--------p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
++.+..- . .+...|..+..++...|+.+.+....++..+
T Consensus 306 ~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 306 TALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 9887521 0 1367889999999999999999988876443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-14 Score=139.51 Aligned_cols=339 Identities=13% Similarity=0.068 Sum_probs=278.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 010057 43 HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGE----AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN----A 114 (519)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 114 (519)
.+++++|++.|+...+. .+...+..+...|.. .++.++|.+.|+...+.| +...+..|-..|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 48999999999998642 467788889999988 899999999999998875 66778888888888 8
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCC
Q 010057 115 GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL----NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR----AGK 186 (519)
Q Consensus 115 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~ 186 (519)
+++++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +...+..|...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 89999999999998876 67788888888887 889999999999999864 78888999999988 899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHh
Q 010057 187 YEEALEIFSKMQEAGVQPDKAACNILIEKCCK----AGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLW 262 (519)
Q Consensus 187 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 262 (519)
.++|.++|+...+.| +...+..+...|.. .+++++|..+|+...+.+...
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~----------------------- 256 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSI----------------------- 256 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHH-----------------------
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH-----------------------
Confidence 999999999998865 56788888888886 789999999999887754321
Q ss_pred hhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcc
Q 010057 263 QVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLK----KKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDH 338 (519)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 338 (519)
....+...+.. .++.++|...++...+.+ +...+..+...|...
T Consensus 257 -----------------------------a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~ 304 (490)
T 2xm6_A 257 -----------------------------AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKG 304 (490)
T ss_dssp -----------------------------HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHC
T ss_pred -----------------------------HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcC
Confidence 11122333444 688899999999887654 445666666777666
Q ss_pred -----CChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC---CcchHHHHHHHHHhcCCCccchhHHHHHHHHhc---
Q 010057 339 -----RRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLN---TFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGS--- 407 (519)
Q Consensus 339 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 407 (519)
+++++|+..|+...+.+ +...+..+...|...| ++++|.+.|+...+.| ++..+..|...|..
T Consensus 305 ~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 378 (490)
T 2xm6_A 305 AEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKG 378 (490)
T ss_dssp BTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 89999999999999876 3456777777777756 7899999999999875 56677778888887
Q ss_pred -CCCcchHHHHhhhCCcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 010057 408 -ARRPVPAAKIFSLLPEDQKCTATYTALIGVYFS----AGSADKALKIYKTMCRKGI 459 (519)
Q Consensus 408 -~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 459 (519)
.++.++|.+.|++..+.. ++..+..|...|.+ .+++++|.+.|++..+.|.
T Consensus 379 ~~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 379 VKKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 789999999999887653 47788999999998 8999999999999999864
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-16 Score=145.95 Aligned_cols=288 Identities=11% Similarity=-0.008 Sum_probs=209.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010057 135 TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214 (519)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 214 (519)
+...+..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34556677778888888888888888887753 3366778888888888888888888888887753 336678888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchh
Q 010057 215 KCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQ 294 (519)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (519)
.|...|++++|...++.+.+..........
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 127 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGS-------------------------------------------------- 127 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC----------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHH--------------------------------------------------
Confidence 888888888888888887764332100000
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH--HHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIE--VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIK 372 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (519)
.+ ....|+......+.. .+...|++++|+..++.+.+.. +.+...+..+...+..
T Consensus 128 ~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 184 (327)
T 3cv0_A 128 VN----------------------LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNL 184 (327)
T ss_dssp ----------------------------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HH----------------------hHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 00 000011111111212 2566778888888888887764 3366778888888888
Q ss_pred cCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHH
Q 010057 373 LNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIY 451 (519)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 451 (519)
.|++++|.+.+..+.+.. +.+...+..+...+...|++++|.+.|+++.+.. .+...|..+..+|.+.|++++|.+.|
T Consensus 185 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999998888764 3456778888888889999999999988876543 45778999999999999999999999
Q ss_pred HHHHHCCCCC-----------CcccHHHHHHHHHhcCChhHHHHHHHHhcccCccccc
Q 010057 452 KTMCRKGIHP-----------SLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALS 498 (519)
Q Consensus 452 ~~m~~~g~~p-----------~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 498 (519)
+++.+..... +..++..+..++.+.|++++|..++++..+..|+...
T Consensus 264 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 264 VRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 9998763211 3678888999999999999999999887776665443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-17 Score=149.06 Aligned_cols=182 Identities=13% Similarity=0.139 Sum_probs=67.6
Q ss_pred ccCChhHHHHHHHhCCCCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010057 13 KYSTWDSAQDLLKNLPIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVF 89 (519)
Q Consensus 13 ~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 89 (519)
+.|++++|.+.+++++ ++.+|..+..++ |++++|++.|.+ .+|..+|..++..+...|++++|...+
T Consensus 15 ~~~~ld~A~~fae~~~---~~~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN---EPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4578999999999983 345888887766 899999999964 367789999999999999999999988
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010057 90 ELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPP 169 (519)
Q Consensus 90 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 169 (519)
+...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 877764 4567889999999999999999998885 368889999999999999999999999977
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010057 170 NCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILI 228 (519)
Q Consensus 170 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 228 (519)
..|..|..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|...
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~ 199 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 199 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHH
Confidence 37999999999999999999999988 2789999999999999999999543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-14 Score=139.74 Aligned_cols=405 Identities=10% Similarity=0.042 Sum_probs=258.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
+-+...|..++.. .+.|++++|..+|+.+.+.. +-+...|..++..+.+.|++++|..+|++.... .|+...|..+
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 5578899999984 78899999999999999864 337789999999999999999999999999877 4677788777
Q ss_pred HHHH-HhcCCHHHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCCCH
Q 010057 143 MKIL-FLNDRVKEATD----VYKEMIQ-RGLPP-NCYTYTVLMEYLVR---------AGKYEEALEIFSKMQEAGVQPDK 206 (519)
Q Consensus 143 i~~~-~~~~~~~~a~~----~~~~m~~-~g~~p-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~ 206 (519)
+... ...|+.++|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++..+....+..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7533 45677766655 7776655 35444 56678877776655 68899999999998873111112
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccc-cchhhhhhHHhc
Q 010057 207 AACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFI-SDNDAVEFVTTD 285 (519)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 285 (519)
..|..........|. ..+..++.+ ....+..+...+................+.+... ......
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l~~--------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~------ 230 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMIED--------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV------ 230 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHHHT--------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH------
T ss_pred HHHHHHHHHHHhhch-hHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH------
Confidence 344333221111111 111111110 0111222221111100000000000000000000 000000
Q ss_pred cCCCCcchhHHHHHHHh----cCCH----HHHHHHHHHHHhcCCCccHHHHHHHHHHHhc-------cCChh-------h
Q 010057 286 IEGPLSIDQGLVLILLK----KKNL----VAIDSLLSGIMDKSIQLDSAVISTIIEVNCD-------HRRRD-------G 343 (519)
Q Consensus 286 ~~~~~~~~~~l~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~ 343 (519)
..+...+..... .++. ..+..++++..... .-+...|......+.. .|+++ +
T Consensus 231 -----~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 231 -----DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp -----HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 011111111111 1122 35556676665542 2256677777777664 68877 8
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCcc--chhHHHHHHHHhcCCCcchHHHHhhhC
Q 010057 344 ALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLG--VYLGALLIHRLGSARRPVPAAKIFSLL 421 (519)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (519)
|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+.+++.. |+ ...|..++..+.+.|++++|.++|++.
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999863223457779999999999999999999999999864 43 247888888888999999999999998
Q ss_pred CcCCCC-chhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 422 PEDQKC-TATYTALIGV-YFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 422 ~~~~~~-~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.+.+|+ ...|...... +...|++++|.++|++..+.. +.+...|..++..+.+.|+.++|..+|++..+..|.
T Consensus 383 l~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 383 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 876553 2333332222 346899999999999998872 335788888999999999999999999999877553
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=8e-16 Score=143.18 Aligned_cols=235 Identities=11% Similarity=-0.027 Sum_probs=173.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 65 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
+...|..+...+.+.|++++|...|+.+.+.... +..+|..+...+...|++++|...|++..+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3445778888888899999999999998876433 67888889999999999999999999888763 235778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 010057 145 ILFLNDRVKEATDVYKEMIQRGLPPN-----------CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQ-PDKAACNIL 212 (519)
Q Consensus 145 ~~~~~~~~~~a~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l 212 (519)
+|...|++++|...|+++.+. .|+ ...+..+...+...|++++|..+|+++.+.... ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999888774 222 223344577778888888888888888775321 157788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcc
Q 010057 213 IEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSI 292 (519)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (519)
...|...|++++|...++...+...
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p------------------------------------------------------- 244 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRP------------------------------------------------------- 244 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-------------------------------------------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-------------------------------------------------------
Confidence 8888888888888888887665321
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 010057 293 DQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIK 372 (519)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (519)
.+..++..+..+|...|++++|+..|+++.+.. +.+...+..+..+|.+
T Consensus 245 ------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 245 ------------------------------EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCIN 293 (365)
T ss_dssp ------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred ------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 134567777778888888888888888887754 3346678888888888
Q ss_pred cCCcchHHHHHHHHHhc
Q 010057 373 LNTFPKVAEIVEEMTKA 389 (519)
Q Consensus 373 ~~~~~~a~~~~~~~~~~ 389 (519)
.|++++|...++.+.+.
T Consensus 294 ~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSL 310 (365)
T ss_dssp HTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 88888888888888753
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-15 Score=135.25 Aligned_cols=152 Identities=7% Similarity=-0.023 Sum_probs=99.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 010057 74 DIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVK 153 (519)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 153 (519)
+.....|++..|...++........+.......+.++|...|+++.|+..++. .-+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 33445677777777776654432111123445566777777777777765543 13456667777777777777777
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 154 EATDVYKEMIQRGLPP-NCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 154 ~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
+|.+.++++...+..| +...+..+...+...|++++|++.++. +.+..++..+...+.+.|++++|.+.++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777777665444 344555566777777777777777766 346667777777777777777777777776
Q ss_pred HHc
Q 010057 233 KEN 235 (519)
Q Consensus 233 ~~~ 235 (519)
.+.
T Consensus 157 ~~~ 159 (291)
T 3mkr_A 157 QDQ 159 (291)
T ss_dssp HHH
T ss_pred Hhh
Confidence 664
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.7e-16 Score=138.33 Aligned_cols=250 Identities=11% Similarity=0.043 Sum_probs=139.9
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 010057 109 HWLSNAGDVDGAVNIWEEMKLKECYPT--IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK 186 (519)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 186 (519)
+-....|++..|+..++..... .|+ ......+.++|...|+++.|...++.. -+|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 3344556666666666554333 222 234445566666666666666554331 23455566666666666666
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhC
Q 010057 187 YEEALEIFSKMQEAGVQP-DKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVH 265 (519)
Q Consensus 187 ~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 265 (519)
.++|++.++++...+..| +...+..+..++...|++++|.+.++.
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---------------------------------- 126 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---------------------------------- 126 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----------------------------------
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----------------------------------
Confidence 666666666666554334 333444555666666666666665543
Q ss_pred CCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHH
Q 010057 266 PQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGAL 345 (519)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 345 (519)
..+...+..+...|.+.|++++|.
T Consensus 127 --------------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 127 --------------------------------------------------------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp --------------------------------------------------------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------------------------------------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 113344555666677777777777
Q ss_pred HHHHHHHhCCCCcCHHHH---HHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCC
Q 010057 346 LAFEYSVKMDLNLERTAY---LALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLP 422 (519)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 422 (519)
+.|+.+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.++..++.+..++.+.|++++|++.|+++.
T Consensus 151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777776653 332211 112233333466777777777776652 4455556666666666666666666666554
Q ss_pred cCC-CCchhHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 010057 423 EDQ-KCTATYTALIGVYFSAGSADK-ALKIYKTMCRK 457 (519)
Q Consensus 423 ~~~-~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 457 (519)
... .++.++..++..+...|+.++ +.++++++.+.
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 432 245556666666666666544 34566666555
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.7e-15 Score=135.02 Aligned_cols=230 Identities=10% Similarity=0.019 Sum_probs=135.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 148 (519)
+..+...+...|++++|..+|+.+.+.... +...+..+..++...|++++|...|+++.+.. +.+..++..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 445555666666666666666666654322 55566666666666666666666666665542 2245566666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 010057 149 NDRVKEATDVYKEMIQRGLPPN-CYTYTVL--------------ME-YLVRAGKYEEALEIFSKMQEAGVQPDKAACNIL 212 (519)
Q Consensus 149 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 212 (519)
.|++++|.+.++++.+.. |+ ...+..+ .. .+...|++++|...++.+.+.. +.+..++..+
T Consensus 102 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 666666666666666542 22 1122111 11 2455566677777776666542 2255566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcc
Q 010057 213 IEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSI 292 (519)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (519)
...|...|++++|...++.+.+...
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~------------------------------------------------------- 203 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRP------------------------------------------------------- 203 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-------------------------------------------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-------------------------------------------------------
Confidence 6667777777777666665544221
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 010057 293 DQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIK 372 (519)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (519)
.+...+..+...+...|++++|+..|+.+.+.. +.+...+..+...+..
T Consensus 204 ------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 204 ------------------------------DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp ------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred ------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 123345555566666677777777776666543 2345566677777777
Q ss_pred cCCcchHHHHHHHHHhc
Q 010057 373 LNTFPKVAEIVEEMTKA 389 (519)
Q Consensus 373 ~~~~~~a~~~~~~~~~~ 389 (519)
.|++++|.+.++.+.+.
T Consensus 253 ~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh
Confidence 77777777777776654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-13 Score=137.43 Aligned_cols=377 Identities=11% Similarity=0.093 Sum_probs=219.1
Q ss_pred hhccCChhHHHHHHHhCCCCCCHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010057 11 ILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFE 90 (519)
Q Consensus 11 ~~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 90 (519)
+...|.+++|.++|++.+. .....+.++...+++++|.++.++. -++.+|..+..++.+.|++++|.+.|.
T Consensus 1059 ai~lglyEEAf~IYkKa~~--~~~A~~VLie~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV--NTSAVQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC--HHHHHHHHHHHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4556777777777777652 2333455566667777777777644 235667777777777777777777774
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010057 91 LMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN 170 (519)
Q Consensus 91 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 170 (519)
.. -|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...+. + .|+
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 42 256677777777777777777777777665543 33333445777777777766533332 2 345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 010057 171 CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQT 250 (519)
Q Consensus 171 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 250 (519)
...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++...
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n---------------- 1249 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANS---------------- 1249 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCC----------------
Confidence 566666777777777777777777764 3677777777777777777777765422
Q ss_pred HhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHH
Q 010057 251 FKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVIST 330 (519)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (519)
...|......+...+++..|....-. +..+...+..
T Consensus 1250 ---------------------------------------~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLee 1285 (1630)
T 1xi4_A 1250 ---------------------------------------TRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 1285 (1630)
T ss_pred ---------------------------------------HHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHH
Confidence 11333344445555555555544332 3345555667
Q ss_pred HHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc--CCcchHHHHHHHHHhcCCCc------cchhHHHHH
Q 010057 331 IIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKL--NTFPKVAEIVEEMTKAGHSL------GVYLGALLI 402 (519)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~ 402 (519)
++..|.+.|.+++|+.+++...... +-....|+-+...+++- ++..++.+.|..- -++++ +...|..++
T Consensus 1286 li~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~r--ini~k~~r~~e~~~lW~elv 1362 (1630)
T 1xi4_A 1286 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELV 1362 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHH
Confidence 7777777777777777777666443 22333455555555543 2333333333322 12222 455677777
Q ss_pred HHHhcCCCcchHHHHh-------------hhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 010057 403 HRLGSARRPVPAAKIF-------------SLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVL 469 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 469 (519)
..|.+.|+++.|.... ........|+..|...+..|... ...++.-+.......+ -+.-.
T Consensus 1363 ~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~--~P~~lndLl~~l~~rl-----D~~R~ 1435 (1630)
T 1xi4_A 1363 FLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRL-----DHTRA 1435 (1630)
T ss_pred HHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhh--ChHHHHHHHHHhhhcC-----ChHHH
Confidence 7777777777766322 12222234566666666666632 2223333333332211 22345
Q ss_pred HHHHHhcCChhHHHHHHHHhc
Q 010057 470 LAGLEKLGRVSDAEIYRKEKK 490 (519)
Q Consensus 470 ~~~~~~~g~~~~a~~~~~~~~ 490 (519)
+..+.+.|...-+..+++..+
T Consensus 1436 V~l~~~~~~l~lik~yl~~vq 1456 (1630)
T 1xi4_A 1436 VNYFSKVKQLPLVKPYLRSVQ 1456 (1630)
T ss_pred HHHHHHcCChHHhHHHHHHHH
Confidence 556666777776666665543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-13 Score=132.73 Aligned_cols=368 Identities=10% Similarity=-0.044 Sum_probs=221.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHC----
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEK-----G--INI-DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK---- 130 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 130 (519)
......||.+...+...|++++|.+.|++..+. + ..| ...+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567888888888999999998888776431 1 122 4567888888999999999999888876542
Q ss_pred -C-CCC-ChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHcC
Q 010057 131 -E-CYP-TIVSYTAYMKILFL--NDRVKEATDVYKEMIQRGLPP-NCYTYTVLMEY---LVRAGKYEEALEIFSKMQEAG 201 (519)
Q Consensus 131 -~-~~p-~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g 201 (519)
+ ..+ ...++..+..++.+ .+++++|.+.|++..+. .| +...+..+... +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 111 23455555555544 35688999999988875 34 34455444444 345577788888888877643
Q ss_pred CCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchh
Q 010057 202 VQPDKAACNILIEKCCKA----GETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDND 277 (519)
Q Consensus 202 ~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (519)
+.+..++..+...+... ++++.|.+.+++.......
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~--------------------------------------- 245 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG--------------------------------------- 245 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS---------------------------------------
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc---------------------------------------
Confidence 22455665555555543 5677888888776654322
Q ss_pred hhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcc-------------------
Q 010057 278 AVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDH------------------- 338 (519)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------------------- 338 (519)
.......+...+...|+.+.|...+......... +...+..+...|...
T Consensus 246 -----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~ 313 (472)
T 4g1t_A 246 -----------VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313 (472)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHH
T ss_pred -----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1113344556777888888888888877665422 344555555555322
Q ss_pred CChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccch--hHHHHHH-HHhcCCCcchHH
Q 010057 339 RRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVY--LGALLIH-RLGSARRPVPAA 415 (519)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~ 415 (519)
+..+.|...|+...+.. +.+...+..+...+...|++++|.+.|+..++....+... .+..+.. .+...|+.++|.
T Consensus 314 ~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 314 ELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred hhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 23456666776666544 2344557777788888888888888888887765333221 1222222 234667788888
Q ss_pred HHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 416 KIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
..|++..+..|+...+.. ....+.+++++..+.. +.++.+|..+..+|...|++++|.+.|++..++.|.
T Consensus 393 ~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 393 HHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 888776665554332222 2233445555555543 556889999999999999999999999999887554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.9e-12 Score=129.92 Aligned_cols=386 Identities=13% Similarity=0.104 Sum_probs=199.7
Q ss_pred CCHHHHHHHHhcCCChHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHH
Q 010057 31 WDSYTVNQVLKTHPPMEKAWLFFNWVSRS-RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGI--NIDAVTYTSV 107 (519)
Q Consensus 31 p~~~~~~~ll~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l 107 (519)
-|+..|+.+|...... -.++.+|.... -.-.-++.--...+++|...|.+.++.++++...-.+- .-+...-+.+
T Consensus 951 ~d~~lW~~vl~~~n~~--RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlL 1028 (1630)
T 1xi4_A 951 KDPELWGSVLLESNPY--RRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLL 1028 (1630)
T ss_pred cCHHHHHHHhcCCcHH--HHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHH
Confidence 4667777777554322 23344443210 00123444456677888888888888888888874321 1133455556
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 010057 108 MHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187 (519)
Q Consensus 108 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 187 (519)
+.+..+. +..+..+..++.... + ...+...+...|.+++|..+|++... .....+.++. ..+++
T Consensus 1029 i~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nl 1092 (1630)
T 1xi4_A 1029 ILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNL 1092 (1630)
T ss_pred HHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhH
Confidence 6555555 445555555554321 1 23355566667777777777766421 1222233322 45566
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCC
Q 010057 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQ 267 (519)
Q Consensus 188 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 267 (519)
++|.++.++.. +..+|..+..++.+.|++++|.+.|... -+...|......+.+.++.++..+-+...
T Consensus 1093 drAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1093 DRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666665441 3456666666666666666666666432 12223333333333333222221110000
Q ss_pred CCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHH
Q 010057 268 FSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLA 347 (519)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 347 (519)
.-...++.+...+...|.+.++++.....++ .++...|..+...|...|++++|..+
T Consensus 1161 ----------------rk~~~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~ 1217 (1630)
T 1xi4_A 1161 ----------------RKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLL 1217 (1630)
T ss_pred ----------------HhhcccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 0000112233446666666666664443321 23444555566666666666666666
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC
Q 010057 348 FEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC 427 (519)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 427 (519)
|... ..|..+...+.+.|+++.|.+.++.. .+..+|..+..+|...|++..|......+.. +
T Consensus 1218 Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv---~ 1279 (1630)
T 1xi4_A 1218 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---H 1279 (1630)
T ss_pred HHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc---C
Confidence 6653 25666666666666666666666655 3345666666666666666666665554322 2
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh--cCChhHHHHHHHH
Q 010057 428 TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK--LGRVSDAEIYRKE 488 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~--~g~~~~a~~~~~~ 488 (519)
+..+..++..|.+.|.+++|+.+++...... +-....|+-+...|++ -++..++.++|..
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455566666777777777777776655332 2223344444444433 3334444555543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-14 Score=125.22 Aligned_cols=232 Identities=14% Similarity=0.034 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCcc--CHHHHHHHH
Q 010057 171 CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLAL--RYPVFKEAL 248 (519)
Q Consensus 171 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~l 248 (519)
...+..+...+...|++++|..+|+...+.. .+..++..+..++...|++++|...++...+..... +..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------ 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------ 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH------
Confidence 3467777778888888888888888887765 677788888888888888888888888765522110 000
Q ss_pred HHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHH
Q 010057 249 QTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVI 328 (519)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 328 (519)
.....+
T Consensus 77 --------------------------------------------------------------------------~~~~~~ 82 (258)
T 3uq3_A 77 --------------------------------------------------------------------------VISKSF 82 (258)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 013455
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcC
Q 010057 329 STIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSA 408 (519)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (519)
..+...+...|++++|+..|+.+.+.. |+. ..+.+.|++++|...++.+.+.. +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 666667777778888888887777643 332 34556677788888888877754 34556677777788888
Q ss_pred CCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 010057 409 RRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRK 487 (519)
Q Consensus 409 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~ 487 (519)
|++++|.+.++++.+. +.+...|..+..+|.+.|++++|++.|++..+.. +.+...+..+..++.+.|++++|...++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888877654 3457788899999999999999999999998874 4457788888899999999999999999
Q ss_pred HhcccCcc
Q 010057 488 EKKSIQAD 495 (519)
Q Consensus 488 ~~~~~~~~ 495 (519)
+..++.|.
T Consensus 232 ~a~~~~~~ 239 (258)
T 3uq3_A 232 AARTKDAE 239 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHhChh
Confidence 99888754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-12 Score=124.49 Aligned_cols=389 Identities=12% Similarity=-0.020 Sum_probs=233.0
Q ss_pred CCHHHHHHHH---hcCCChHHHHHHHHHHhhc----C---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----
Q 010057 31 WDSYTVNQVL---KTHPPMEKAWLFFNWVSRS----R---GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEK----- 95 (519)
Q Consensus 31 p~~~~~~~ll---~~~~~~~~A~~~~~~~~~~----~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----- 95 (519)
.....||.+- ...|+.++|++.|+...+. . .-+....+|+.+...|...|++++|...++...+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3345565432 3349999999999876431 1 12334678999999999999999999999887642
Q ss_pred C-CC-CCHHHHHHHHHHHHhc--CChhhHHHHHHHHHHCCCCCC-hhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCC
Q 010057 96 G-IN-IDAVTYTSVMHWLSNA--GDVDGAVNIWEEMKLKECYPT-IVSYTAYMKI---LFLNDRVKEATDVYKEMIQRGL 167 (519)
Q Consensus 96 ~-~~-~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~ 167 (519)
+ .. ....++..+..++... +++++|++.|++..+.. |+ ...+..+..+ +...++.++|++.+++..+..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 11 1356676666566554 56899999999988763 43 4455544444 445678889999999888753
Q ss_pred CCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHH
Q 010057 168 PPNCYTYTVLMEYLVRA----GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPV 243 (519)
Q Consensus 168 ~p~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 243 (519)
+.+..++..+...+... +++++|.+++++..... +.+..++..+...|...|+++.|...++...+..+.....
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~- 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL- 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHH-
Confidence 33566666666555544 57789999999988753 3466788999999999999999999999988765432211
Q ss_pred HHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 010057 244 FKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQL 323 (519)
Q Consensus 244 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (519)
+..+-..+......... .............+..+.|...+........ .
T Consensus 284 ~~~lg~~y~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~ 332 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMN------------------------------LRENGMYGKRKLLELIGHAVAHLKKADEAND-N 332 (472)
T ss_dssp HHHHHHHHHHHHHHHHH------------------------------C------CHHHHHHHHHHHHHHHHHHHHHCT-T
T ss_pred HHHHHHHHHHHHHHhhh------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-c
Confidence 11111111100000000 0000000011122334566666666655432 2
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHH--HHHHHHH-HHHhcCCcchHHHHHHHHHhcCCCccchhHHH
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERT--AYLALIG-ILIKLNTFPKVAEIVEEMTKAGHSLGVYLGAL 400 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 400 (519)
+...+..+...|...|++++|++.|++..+....+... .+..+.. .....|+.++|+..|...++.. |+......
T Consensus 333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~ 410 (472)
T 4g1t_A 333 LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK 410 (472)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH
T ss_pred hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH
Confidence 34457778888999999999999999998876444322 1223322 2356789999999999998764 44332222
Q ss_pred HHHHHhcCCCcchHHHHhhhCCc-CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCcccH
Q 010057 401 LIHRLGSARRPVPAAKIFSLLPE-DQKCTATYTALIGVYFSAGSADKALKIYKTMCRKG-IHPSLGTF 466 (519)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~ 466 (519)
. ...+.++++.... .+.+..+|..+..+|...|++++|++.|++.++.| ..|++.+|
T Consensus 411 ~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 411 M---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp H---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred H---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 2 2233444444333 35568899999999999999999999999999875 23554443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-13 Score=119.89 Aligned_cols=116 Identities=11% Similarity=-0.038 Sum_probs=65.7
Q ss_pred ChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhh
Q 010057 340 RRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFS 419 (519)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 419 (519)
++++|+..++.+.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|+
T Consensus 120 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3344444444443322 1122334445555555555555555555555433 2334455555555555555555555555
Q ss_pred hCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 420 LLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 420 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
...+. +.+...|..+..+|.+.|++++|.+.|++..+.
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 54443 233667888888888888988888888887765
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.2e-13 Score=112.21 Aligned_cols=167 Identities=11% Similarity=-0.015 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
+++...+..+...+.+.|++++|...|+...+.... +...+..+..++.+.|++++|+..|++..+... .+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 344455555555556666666666666665554322 455555555566666666666666665555421 134455555
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 010057 143 MKILFLN-----------DRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNI 211 (519)
Q Consensus 143 i~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 211 (519)
...+... |++++|...|++..+.. +-+...+..+...+...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 5555555 66666666666655532 1134455555566666666666666666655544 45555556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 010057 212 LIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 212 li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
+..+|...|++++|...|+...+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~ 179 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALE 179 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-12 Score=111.80 Aligned_cols=199 Identities=12% Similarity=0.038 Sum_probs=118.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 010057 133 YPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNIL 212 (519)
Q Consensus 133 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 212 (519)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3456667777777777777777777777777652 2356677777777777777777777777777643 2245566666
Q ss_pred HHHHHhc-----------CChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhh
Q 010057 213 IEKCCKA-----------GETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEF 281 (519)
Q Consensus 213 i~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (519)
..++.+. |++++|...++...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-------------------------------------------- 115 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-------------------------------------------- 115 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT--------------------------------------------
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc--------------------------------------------
Confidence 6666666 666666665555444221
Q ss_pred HHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHH
Q 010057 282 VTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERT 361 (519)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 361 (519)
-+...+..+...+...|++++|+..|++..+.. .+..
T Consensus 116 -----------------------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~ 152 (217)
T 2pl2_A 116 -----------------------------------------RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPE 152 (217)
T ss_dssp -----------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred -----------------------------------------ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchH
Confidence 133445555566666777777777777776665 5666
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhC
Q 010057 362 AYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLL 421 (519)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (519)
.+..+..++...|++++|...++...+.. +.+...+..+...+...|++++|.+.|++.
T Consensus 153 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 153 IRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66777777777777777777777776653 234445555555556666666665555543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=7.3e-13 Score=117.69 Aligned_cols=151 Identities=11% Similarity=-0.075 Sum_probs=90.1
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 010057 328 ISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGS 407 (519)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 407 (519)
+..+...|...|++++|+..|+.+.+.. |+.......+..+...|++++|...+....... +++...+ .++..+..
T Consensus 114 ~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~ 189 (275)
T 1xnf_A 114 HLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLG 189 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHH
Confidence 3344444455555555555555554432 222222333334455567777777776665543 2333333 35555666
Q ss_pred CCCcchHHHHhhhCCcCCCC-----chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHH
Q 010057 408 ARRPVPAAKIFSLLPEDQKC-----TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482 (519)
Q Consensus 408 ~g~~~~A~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a 482 (519)
.++.++|.+.++......|+ ...|..+...|.+.|++++|.+.|++..+. .|+. +.....++...|++++|
T Consensus 190 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a 265 (275)
T 1xnf_A 190 NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQD 265 (275)
T ss_dssp SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhh
Confidence 66677777777766554332 567888999999999999999999999876 3432 33345577788888888
Q ss_pred HHHH
Q 010057 483 EIYR 486 (519)
Q Consensus 483 ~~~~ 486 (519)
.+.+
T Consensus 266 ~~~~ 269 (275)
T 1xnf_A 266 QDDL 269 (275)
T ss_dssp ----
T ss_pred HHHH
Confidence 7766
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.4e-11 Score=106.01 Aligned_cols=224 Identities=11% Similarity=0.064 Sum_probs=159.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCChhhHH
Q 010057 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN----AGDVDGAVNIWEEMKLKECYPTIVSYT 140 (519)
Q Consensus 65 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~ 140 (519)
+..++..+...+...|++++|.+.|+...+.+ +...+..+...|.. .+++++|...|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45666777777777788888888887777732 45667777777777 788888888888777764 566777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 010057 141 AYMKILFL----NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR----AGKYEEALEIFSKMQEAGVQPDKAACNIL 212 (519)
Q Consensus 141 ~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 212 (519)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 788888888888777754 66777777777777 778888888887777754 45566666
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCC
Q 010057 213 IEKCCK----AGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEG 288 (519)
Q Consensus 213 i~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (519)
...|.. .+++++|...++...+.+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------------------------- 180 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---------------------------------------------------- 180 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------------------------
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC----------------------------------------------------
Confidence 677766 677777777777655432
Q ss_pred CCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc----cCChhhHHHHHHHHHhCCCCcCHHHHH
Q 010057 289 PLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCD----HRRRDGALLAFEYSVKMDLNLERTAYL 364 (519)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (519)
+...+..+...|.. .+++++|+..|+...+.+. ...+.
T Consensus 181 -----------------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~ 222 (273)
T 1ouv_A 181 -----------------------------------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCF 222 (273)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred -----------------------------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHH
Confidence 12233344445555 6778888888887777652 45666
Q ss_pred HHHHHHHh----cCCcchHHHHHHHHHhcC
Q 010057 365 ALIGILIK----LNTFPKVAEIVEEMTKAG 390 (519)
Q Consensus 365 ~l~~~~~~----~~~~~~a~~~~~~~~~~~ 390 (519)
.+...|.+ .+++++|.+.++...+.+
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777777 788888888888887765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=7.5e-12 Score=115.49 Aligned_cols=247 Identities=11% Similarity=0.028 Sum_probs=165.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010057 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK-YEEALEIFSKMQEAGVQPDKAACNILIE 214 (519)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~ 214 (519)
...|+.+...+.+.|++++|++.|++.++.. +-+...|+.+...+...|+ +++|+..|++...... -+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 3456666677777777777777777777652 2245667777777777775 7777777777776432 25567777777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchh
Q 010057 215 KCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQ 294 (519)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (519)
++...|++++|+..|+.+.+....
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-------------------------------------------------------- 198 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-------------------------------------------------------- 198 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT--------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc--------------------------------------------------------
Confidence 777777777777777766653321
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHh-c
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIK-L 373 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 373 (519)
+...|..+..++...|++++|+..|+++.+.. +-+...|+.+..++.+ .
T Consensus 199 -----------------------------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 199 -----------------------------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred -----------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 34455555666666777777887777777665 2355667777777777 5
Q ss_pred CCcchH-----HHHHHHHHhcCCCccchhHHHHHHHHhcCC--CcchHHHHhhhCCcCCCCchhHHHHHHHHHhcC----
Q 010057 374 NTFPKV-----AEIVEEMTKAGHSLGVYLGALLIHRLGSAR--RPVPAAKIFSLLPEDQKCTATYTALIGVYFSAG---- 442 (519)
Q Consensus 374 ~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 442 (519)
|..++| ++.+...++.. +-+...+..+...+...| +.++|.+.+..+...+.+...+..+..+|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 555777 47777777654 345567777777777777 578888888777222445677888888888764
Q ss_pred -----CHHHHHHHHHHH-HHCCCCCCc-ccHHHHHHHH
Q 010057 443 -----SADKALKIYKTM-CRKGIHPSL-GTFNVLLAGL 473 (519)
Q Consensus 443 -----~~~~A~~~~~~m-~~~g~~p~~-~t~~~l~~~~ 473 (519)
..++|+++|+++ .+. .|.. ..|..+...+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 258889999888 555 4443 3444444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-11 Score=106.10 Aligned_cols=222 Identities=10% Similarity=0.024 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010057 100 DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL----NDRVKEATDVYKEMIQRGLPPNCYTYT 175 (519)
Q Consensus 100 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~ 175 (519)
+..++..+...+...|++++|...|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45667777777888888888888888877742 45677777777777 888888888888887764 677777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCccCHHHHHHH
Q 010057 176 VLMEYLVR----AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCK----AGETRTIILILRYMKENRLALRYPVFKEA 247 (519)
Q Consensus 176 ~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 247 (519)
.+...|.. .+++++|+..|+...+.+ +...+..+...|.. .+++++|...++...+.+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----------- 144 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----------- 144 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----------
Confidence 77788887 888888888888877754 66677777777777 777777777777665533
Q ss_pred HHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHH
Q 010057 248 LQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAV 327 (519)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (519)
+...
T Consensus 145 ----------------------------------------------------------------------------~~~a 148 (273)
T 1ouv_A 145 ----------------------------------------------------------------------------DGDG 148 (273)
T ss_dssp ----------------------------------------------------------------------------CHHH
T ss_pred ----------------------------------------------------------------------------cHHH
Confidence 1122
Q ss_pred HHHHHHHHhc----cCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCccchhHH
Q 010057 328 ISTIIEVNCD----HRRRDGALLAFEYSVKMDLNLERTAYLALIGILIK----LNTFPKVAEIVEEMTKAGHSLGVYLGA 399 (519)
Q Consensus 328 ~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (519)
+..+...|.. .+++++|+..|+...+.+ +...+..+...+.. .+++++|.+.++...+.+. ...+.
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~ 222 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCF 222 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHH
Confidence 2333334444 677888888888877664 34566677777777 7788888888877776642 33444
Q ss_pred HHHHHHhc----CCCcchHHHHhhhCCc
Q 010057 400 LLIHRLGS----ARRPVPAAKIFSLLPE 423 (519)
Q Consensus 400 ~l~~~~~~----~g~~~~A~~~~~~~~~ 423 (519)
.+...|.. .++.++|.+.|++..+
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 45555555 5555555555554443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-12 Score=117.76 Aligned_cols=236 Identities=11% Similarity=-0.005 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 010057 171 CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE-TRTIILILRYMKENRLALRYPVFKEALQ 249 (519)
Q Consensus 171 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 249 (519)
...|..+...+.+.|++++|+..+++..... +-+..+|..+..++...|+ +++|+..|++..+....
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~----------- 164 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----------- 164 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-----------
Confidence 4567888888999999999999999998853 2256788999999999996 99999999988774432
Q ss_pred HHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHH
Q 010057 250 TFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVIS 329 (519)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (519)
+...|.
T Consensus 165 --------------------------------------------------------------------------~~~a~~ 170 (382)
T 2h6f_A 165 --------------------------------------------------------------------------NYQVWH 170 (382)
T ss_dssp --------------------------------------------------------------------------CHHHHH
T ss_pred --------------------------------------------------------------------------CHHHHH
Confidence 455677
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhc-C
Q 010057 330 TIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGS-A 408 (519)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 408 (519)
.+..++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++.+++.. +.+...++.+..++.. .
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 77778888899999999999999876 4467789999999999999999999999999976 4577888999999988 6
Q ss_pred CCcchH-----HHHhhhCCcCC-CCchhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC---
Q 010057 409 RRPVPA-----AKIFSLLPEDQ-KCTATYTALIGVYFSAG--SADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLG--- 477 (519)
Q Consensus 409 g~~~~A-----~~~~~~~~~~~-~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g--- 477 (519)
|..++| .+.|++..... .+...|+.+...+.+.| ++++|++.+.++ +. -+.+...+..+..+|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred CcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 666888 47777766554 45778999999999988 689999999988 33 2445677888888998864
Q ss_pred ------ChhHHHHHHHHh-cccCccc
Q 010057 478 ------RVSDAEIYRKEK-KSIQADA 496 (519)
Q Consensus 478 ------~~~~a~~~~~~~-~~~~~~~ 496 (519)
..++|.++++++ .+++|..
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred ccchHHHHHHHHHHHHHHHHHhCchh
Confidence 258999999999 8887753
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-11 Score=107.21 Aligned_cols=129 Identities=12% Similarity=0.060 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLV 182 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 182 (519)
.|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 33444444444444444444444444331 1133344444444444444444444444444431 123444444444444
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010057 183 RAGKYEEALEIFSKMQEAGVQP-DKAACNILIEKCCKAGETRTIILILRYMK 233 (519)
Q Consensus 183 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 233 (519)
..|++++|.++++++...+..| +...+..+..++...|++++|...++...
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555554444321222 22344444444555555555555444433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.2e-12 Score=112.58 Aligned_cols=128 Identities=8% Similarity=0.079 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN--CYTYTVLMEY 180 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~ 180 (519)
.+......+...|++++|+..|++..+... .+...+..+..++...|++++|.+.+++..+.+-.|+ ..+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344455566666667777776666665521 1344666666666666666666666666665321111 2335666666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 181 LVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 181 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
+...|++++|.+.|+...+.. +.+..++..+..+|...|++++|...+++.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666665532 123345556666666666666666555543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-11 Score=106.18 Aligned_cols=166 Identities=14% Similarity=0.036 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
...|..+...+...|++++|.+.|+.+.+... .+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 46678888888899999999999998887643 367788888899999999999999999887763 2367788888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPP-NCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRT 224 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 224 (519)
+...|++++|.+.|+++.+.+..| +...+..+...+...|++++|...+++..+.. +.+..++..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999988743345 45677888888999999999999999888753 2356788888888888899998
Q ss_pred HHHHHHHHHH
Q 010057 225 IILILRYMKE 234 (519)
Q Consensus 225 a~~~~~~~~~ 234 (519)
|...++.+.+
T Consensus 194 A~~~~~~~~~ 203 (252)
T 2ho1_A 194 ARQYYDLFAQ 203 (252)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 8888887665
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-12 Score=123.42 Aligned_cols=373 Identities=9% Similarity=-0.001 Sum_probs=190.2
Q ss_pred HhhhccCChhHHHHHHHhC---CCCCCHHH-HHHHHhcCCCh---HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-
Q 010057 9 YKILKYSTWDSAQDLLKNL---PIKWDSYT-VNQVLKTHPPM---EKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAK- 80 (519)
Q Consensus 9 ~~~~~~~~~~~a~~~~~~~---~~~p~~~~-~~~ll~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~- 80 (519)
..+.+.|++++|++.|++. +. |+... ...+....|+. ++|.+.|+.... .++..+..+...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~-~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~-----~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGY-SEAQVGLADIQVGTRDPAQIKQAEATYRAAAD-----TSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC-CTGGGTCC---------------------------------CHHHHHHHHHTC--
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh-----CCHHHHHHHHHHHHhCCC
Confidence 3455667777777777765 32 22211 11112222444 677777766641 14444555555444443
Q ss_pred ----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhh---HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 010057 81 ----RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG---AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVK 153 (519)
Q Consensus 81 ----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 153 (519)
+.++|...|+...+.|.. ..+..|...|...+..+. +.+.+......| +...+..|...|...+.++
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 566777777777665532 245555555555444333 333333333333 3455555666666655443
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChHHHH
Q 010057 154 EATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG---KYEEALEIFSKMQEAGVQPDKAACNILIEKCCKA----GETRTII 226 (519)
Q Consensus 154 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~ 226 (519)
++.+....+.+.-...++..+..|...|...| +.++|++.|+...+.| .++...+..|...|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 33333222221111112225666666666666 6667777776666655 23444444555555433 4566666
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCH
Q 010057 227 LILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNL 306 (519)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (519)
..|+... .+
T Consensus 238 ~~~~~aa-~g---------------------------------------------------------------------- 246 (452)
T 3e4b_A 238 ALLEKIA-PG---------------------------------------------------------------------- 246 (452)
T ss_dssp HHHHHHG-GG----------------------------------------------------------------------
T ss_pred HHHHHHc-CC----------------------------------------------------------------------
Confidence 6665543 11
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHH-H--hccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-----Ccch
Q 010057 307 VAIDSLLSGIMDKSIQLDSAVISTIIEV-N--CDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLN-----TFPK 378 (519)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~ 378 (519)
+...+..+... + ...+++++|+..|++..+.| +...+..+...|. .| ++++
T Consensus 247 -----------------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 247 -----------------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp -----------------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred -----------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 12222222222 2 34667788888888877766 4455566666665 44 7777
Q ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHhc----CCCcchHHHHhhhCCcCCCCchhHHHHHHHHHh----cCCHHHHHHH
Q 010057 379 VAEIVEEMTKAGHSLGVYLGALLIHRLGS----ARRPVPAAKIFSLLPEDQKCTATYTALIGVYFS----AGSADKALKI 450 (519)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 450 (519)
|.+.|+... . .++.....|...|.. ..+.++|.+.|++..+. .++.....|...|.. .+++.+|...
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-GQNSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-TCTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-ChHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 887777776 3 344555556655555 33777888888877654 335666777777764 4588999999
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhccc
Q 010057 451 YKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 451 ~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
|+...+.|. ++.......+......++..+|..+.++-.+.
T Consensus 381 ~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 381 SQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999888873 22222222222223334566676666654443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=8.7e-13 Score=117.19 Aligned_cols=183 Identities=13% Similarity=0.037 Sum_probs=121.7
Q ss_pred CChHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNH--DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 121 (519)
+++++|++.|+.+.+.....+ +..+|..+...+...|++++|...|+...+.... +..+|..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 677888888887764321111 3566777778888888888888888887776432 5677777888888888888888
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010057 122 NIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG 201 (519)
Q Consensus 122 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 201 (519)
..|++..+.. +.+..++..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...+.......
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 8888877653 225667777777788888888888888877764 3444444444455566677777777776665542
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 202 VQPDKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 202 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
+++...+ .++..+...++.+.|...++..
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~ 203 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKAD 203 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHH
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHH
Confidence 2232233 3555555666666666666554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-11 Score=103.23 Aligned_cols=163 Identities=10% Similarity=-0.017 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
...|..+...+...|++++|.+.++.+.+... .+...+..+...+...|++++|...|++..+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 33444445555555555555555555444321 134444444455555555555555555444432 1133444444444
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 010057 146 LFLN-DRVKEATDVYKEMIQRGLPPN-CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETR 223 (519)
Q Consensus 146 ~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 223 (519)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+..++.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 4444 555555555544444211122 2344444444444444444444444444321 112334444444444444444
Q ss_pred HHHHHHHH
Q 010057 224 TIILILRY 231 (519)
Q Consensus 224 ~a~~~~~~ 231 (519)
+|...++.
T Consensus 165 ~A~~~~~~ 172 (225)
T 2vq2_A 165 DADYYFKK 172 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-11 Score=109.68 Aligned_cols=164 Identities=16% Similarity=0.095 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--hhhHHHHHHHH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT--IVSYTAYMKIL 146 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~ 146 (519)
+......+...|++++|...|+...+.... +...+..+...+...|++++|...|++..+....|+ ..+|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 444556667777777777777777765332 444677777777777777777777777766321111 22367777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010057 147 FLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTII 226 (519)
Q Consensus 147 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 226 (519)
...|++++|.+.|++..+.. +.+..++..+...|...|++++|...|++..+.. +.+..++..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888887777652 2255677777777788888888888777776542 224455666652344445777777
Q ss_pred HHHHHHHHc
Q 010057 227 LILRYMKEN 235 (519)
Q Consensus 227 ~~~~~~~~~ 235 (519)
..++...+.
T Consensus 163 ~~~~~a~~~ 171 (272)
T 3u4t_A 163 SSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766553
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.48 E-value=6.6e-10 Score=109.55 Aligned_cols=221 Identities=7% Similarity=-0.070 Sum_probs=157.6
Q ss_pred CCCcchhHHHHHHHhcCCHHHHH-HHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCC---------C
Q 010057 288 GPLSIDQGLVLILLKKKNLVAID-SLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDL---------N 357 (519)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------~ 357 (519)
....++-..+......|+.+.|. .++++..... +.+...+-..+...-..|++++|..+|+.+..... .
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 34555666666777788888886 9998877532 33555667778888889999999999998876410 1
Q ss_pred cC------------HHHHHHHHHHHHhcCCcchHHHHHHHHHhc-CCCccchhHHHHHHHHhcC-CCcchHHHHhhhCCc
Q 010057 358 LE------------RTAYLALIGILIKLNTFPKVAEIVEEMTKA-GHSLGVYLGALLIHRLGSA-RRPVPAAKIFSLLPE 423 (519)
Q Consensus 358 ~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 423 (519)
|+ ...|...+....+.|+.+.|..+|..+.+. + .....+|...+..-.+. ++.+.|.++|+...+
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 32 235777788888889999999999999876 2 12233343333333344 458999999998766
Q ss_pred C-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHhcccCccccccc
Q 010057 424 D-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP--SLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKD 500 (519)
Q Consensus 424 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 500 (519)
. +.++..|...+......|+.+.|..+|++.......+ ....|...+.--.+.|+.+.+..+.+++.+..|+.
T Consensus 499 ~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~---- 574 (679)
T 4e6h_A 499 YFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV---- 574 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC----
T ss_pred HCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Confidence 5 4456677888888888999999999999998874211 23456666666688999999999999998887753
Q ss_pred ccchHHHHhhhhccC
Q 010057 501 AVPMEEKICDLLYGG 515 (519)
Q Consensus 501 ~~~~~~~i~~~~~~~ 515 (519)
..+..|+....+++
T Consensus 575 -~~~~~f~~ry~~~~ 588 (679)
T 4e6h_A 575 -NKLEEFTNKYKVLD 588 (679)
T ss_dssp -CHHHHHHHHTCBTT
T ss_pred -cHHHHHHHHhcCCc
Confidence 35555555554443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.2e-12 Score=120.97 Aligned_cols=141 Identities=14% Similarity=0.036 Sum_probs=109.5
Q ss_pred CChhhHHHHHHHHHhCCCCcCHHHHHHHHHH-H--HhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCC-----C
Q 010057 339 RRRDGALLAFEYSVKMDLNLERTAYLALIGI-L--IKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSAR-----R 410 (519)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~ 410 (519)
+++++|+..|+... .| +...+..+... + ...+++++|.+.|+...+.| ++.....|...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 68999999999987 33 44556666665 3 46899999999999999887 4556666767766 44 8
Q ss_pred cchHHHHhhhCCcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHH
Q 010057 411 PVPAAKIFSLLPEDQKCTATYTALIGVYFS----AGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK----LGRVSDA 482 (519)
Q Consensus 411 ~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~----~g~~~~a 482 (519)
.++|.+.|++.. +.++..+..|...|.. ..++++|++.|++..+.|. +.....+...|.. ..+.++|
T Consensus 303 ~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 303 AKAAEAHFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 999999999988 5667888888888877 4599999999999998873 4455666666653 4578899
Q ss_pred HHHHHHhccc
Q 010057 483 EIYRKEKKSI 492 (519)
Q Consensus 483 ~~~~~~~~~~ 492 (519)
..++++..+.
T Consensus 378 ~~~~~~A~~~ 387 (452)
T 3e4b_A 378 YVFSQLAKAQ 387 (452)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHC
Confidence 9999887654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-11 Score=107.90 Aligned_cols=165 Identities=16% Similarity=0.180 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
...|..+...+...|++++|...|+.+.+.... +...+..+...+...|++++|...|++..+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555555555666666666666666554322 45555556666666666666666666655442 1244555555566
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTI 225 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 225 (519)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666655542 2245555555556666666666666666555432 22444555555555555555555
Q ss_pred HHHHHHHHH
Q 010057 226 ILILRYMKE 234 (519)
Q Consensus 226 ~~~~~~~~~ 234 (519)
...++.+.+
T Consensus 179 ~~~~~~~~~ 187 (243)
T 2q7f_A 179 LSQFAAVTE 187 (243)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-11 Score=108.00 Aligned_cols=202 Identities=16% Similarity=0.120 Sum_probs=130.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010057 100 DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179 (519)
Q Consensus 100 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 179 (519)
....|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 45567777778888888888888888887653 2356777888888888888888888888887753 336677888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhH
Q 010057 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDS 259 (519)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 259 (519)
.+...|++++|.+.++.+.+.. +.+...+..+...+.+.|++++|...++.+.+...
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---------------------- 156 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE---------------------- 156 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT----------------------
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----------------------
Confidence 8888888888888888887653 33566777778888888888888888777655321
Q ss_pred HHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccC
Q 010057 260 LLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHR 339 (519)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 339 (519)
.+...+..+...+...|
T Consensus 157 ---------------------------------------------------------------~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 157 ---------------------------------------------------------------NDTEARFQFGMCLANEG 173 (243)
T ss_dssp ---------------------------------------------------------------TCHHHHHHHHHHHHHHT
T ss_pred ---------------------------------------------------------------ccHHHHHHHHHHHHHcC
Confidence 12334555666667777
Q ss_pred ChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcC
Q 010057 340 RRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAG 390 (519)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 390 (519)
++++|+..|+.+.+.. +.+...+..+...+...|++++|.+.++.+.+..
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 7777777777776654 3345667777777777777777777777777653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-11 Score=114.89 Aligned_cols=298 Identities=10% Similarity=0.003 Sum_probs=177.6
Q ss_pred HhcCChhHHHHHHHHHHhC--CC--CCCHHHHHHHHHHH--HhcCChhhHH-----------HHHHHHHHCCCCCChhh-
Q 010057 77 GEAKRISSMKYVFELMQEK--GI--NIDAVTYTSVMHWL--SNAGDVDGAV-----------NIWEEMKLKECYPTIVS- 138 (519)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~--~~--~~~~~~~~~li~~~--~~~g~~~~a~-----------~~~~~m~~~~~~p~~~~- 138 (519)
.+.+++++|..+++++.+. .+ .++...|..++..- ...++.+.+. +.++.+.... ++...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~ 100 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGL 100 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhH
Confidence 5678888888888887653 22 22333444444321 1223344444 6666665431 11111
Q ss_pred -----HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC---C
Q 010057 139 -----YTAYMKILFLNDRVKEATDVYKEMIQRG-LPPN----CYTYTVLMEYLVRAGKYEEALEIFSKMQEA--GV---Q 203 (519)
Q Consensus 139 -----~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~---~ 203 (519)
+......+...|++++|...|++..+.- -.++ ..++..+...|...|++++|...+.+..+. .. .
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 2224556778899999999999987630 0122 357888889999999999999999887653 11 1
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhH
Q 010057 204 P-DKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFV 282 (519)
Q Consensus 204 p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (519)
+ ...++..+..+|...|++++|...+++..+.......
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------------------- 219 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ----------------------------------------- 219 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC-----------------------------------------
Confidence 1 2347788888999999999999998876552110000
Q ss_pred HhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhC----CC-C
Q 010057 283 TTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM----DL-N 357 (519)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~ 357 (519)
......++..+...|...|++++|+..|++..+. +. +
T Consensus 220 --------------------------------------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 220 --------------------------------------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred --------------------------------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 0001234566777788888888888888877762 22 3
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcC----CCccchhHHHHHHHHhcCCC---cchHHHHhhhCCcCCCCchh
Q 010057 358 LERTAYLALIGILIKLNTFPKVAEIVEEMTKAG----HSLGVYLGALLIHRLGSARR---PVPAAKIFSLLPEDQKCTAT 430 (519)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~ 430 (519)
....++..+...+.+.|++++|...++...+.. -+.....+..+...|...|+ .++|..+++.....+.....
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 334558888888888999999988888876531 11111123334444555555 44455555444221112234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 010057 431 YTALIGVYFSAGSADKALKIYKTMC 455 (519)
Q Consensus 431 ~~~li~~~~~~g~~~~A~~~~~~m~ 455 (519)
+..+...|...|++++|.+.|++..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445555555555555555555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.8e-11 Score=100.55 Aligned_cols=191 Identities=12% Similarity=0.019 Sum_probs=162.1
Q ss_pred cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhhH
Q 010057 42 THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNA-GDVDGA 120 (519)
Q Consensus 42 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a 120 (519)
..|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.++...+... .+..++..+...+... |++++|
T Consensus 20 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~~A 96 (225)
T 2vq2_A 20 RGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFLCGRLNRPAES 96 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCcHHHH
Confidence 3499999999999887543 55688899999999999999999999999988643 3678899999999999 999999
Q ss_pred HHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 121 VNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 121 ~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 175 (225)
T 2vq2_A 97 MAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQS 175 (225)
T ss_dssp HHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988323333 5778889999999999999999999998863 33588899999999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 200 AGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 200 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
.....+...+..+...+...|+.+.+..+++.+.+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 176 RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 5432467788888888899999999999999887644
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-12 Score=123.76 Aligned_cols=278 Identities=11% Similarity=0.010 Sum_probs=172.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHH
Q 010057 138 SYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNC----YTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQP-DKAA 208 (519)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~ 208 (519)
.+..+...+...|++++|...|++..+.+.. +. ..+..+...|...|++++|...+++..+. +-.| ...+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444555666777777777777777664211 22 35666777777777777777777766542 1112 2346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCC
Q 010057 209 CNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEG 288 (519)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (519)
+..+...|...|++++|...+++..+..... ++.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~------------------------------- 162 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQL---------------GDR------------------------------- 162 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------------TCH-------------------------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh---------------hch-------------------------------
Confidence 6777778888888888888877655421000 000
Q ss_pred CCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCC-----------------hhhHHHHHHHH
Q 010057 289 PLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRR-----------------RDGALLAFEYS 351 (519)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~~ 351 (519)
......+..+...|...|+ +++|++.+++.
T Consensus 163 ---------------------------------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 163 ---------------------------------LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 0011223333334444444 55555555544
Q ss_pred HhC----CCCc-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-----ccchhHHHHHHHHhcCCCcchHHHHhhhC
Q 010057 352 VKM----DLNL-ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHS-----LGVYLGALLIHRLGSARRPVPAAKIFSLL 421 (519)
Q Consensus 352 ~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (519)
.+. +..+ ....+..+...+...|++++|...+....+.... .....+..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 332 1111 1234666777777778888888777777643210 11225667777788888888888887765
Q ss_pred CcCCC-------CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 010057 422 PEDQK-------CTATYTALIGVYFSAGSADKALKIYKTMCRKG----IH-PSLGTFNVLLAGLEKLGRVSDAEIYRKEK 489 (519)
Q Consensus 422 ~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~-p~~~t~~~l~~~~~~~g~~~~a~~~~~~~ 489 (519)
....+ ...++..+...|...|++++|.+.+++..+.. -. ....++..+...|...|++++|.+++++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 43211 14577888999999999999999999887641 11 11347777888999999999999999988
Q ss_pred cccCcc
Q 010057 490 KSIQAD 495 (519)
Q Consensus 490 ~~~~~~ 495 (519)
.++.+.
T Consensus 370 l~~~~~ 375 (411)
T 4a1s_A 370 LQLAXX 375 (411)
T ss_dssp HHHCCH
T ss_pred HHHHhh
Confidence 877654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-12 Score=106.30 Aligned_cols=170 Identities=16% Similarity=0.088 Sum_probs=147.3
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHH
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIH 403 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 403 (519)
+..+|..+...|...|++++|++.|++..+.. +-+...+..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56788889999999999999999999998875 3466778999999999999999999999998765 345667777788
Q ss_pred HHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHH
Q 010057 404 RLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482 (519)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a 482 (519)
.+...++++.|.+.+.+.... +.+...+..+..+|.+.|++++|++.|++..+.. +.+..++..+..+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 899999999999999887665 3457789999999999999999999999999874 44677899999999999999999
Q ss_pred HHHHHHhcccCccc
Q 010057 483 EIYRKEKKSIQADA 496 (519)
Q Consensus 483 ~~~~~~~~~~~~~~ 496 (519)
.+.+++..+++|+.
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 99999999998864
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=123.66 Aligned_cols=276 Identities=14% Similarity=0.024 Sum_probs=145.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-
Q 010057 135 TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN----CYTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQPD- 205 (519)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~- 205 (519)
....+......+...|++++|...|++..+.+. .+ ..++..+...|...|++++|...+++.... +-.|.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 344455555666667777777777776666421 12 245666666777777777777777665432 21221
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCcc-CHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHh
Q 010057 206 KAACNILIEKCCKAGETRTIILILRYMKENRLAL-RYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTT 284 (519)
Q Consensus 206 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (519)
..++..+...|...|+++.|...++...+..... +....
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------------------------------------- 126 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE---------------------------------------- 126 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH----------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch----------------------------------------
Confidence 3366667777777788888877777655421110 00000
Q ss_pred ccCCCCcchhHHHHHHHhcCC--------------------HHHHHHHHHHHHhc----CCCc-cHHHHHHHHHHHhccC
Q 010057 285 DIEGPLSIDQGLVLILLKKKN--------------------LVAIDSLLSGIMDK----SIQL-DSAVISTIIEVNCDHR 339 (519)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~ 339 (519)
......+...+...|+ ++.|...+...... +..+ ....+..+...|...|
T Consensus 127 -----~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 201 (406)
T 3sf4_A 127 -----ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 201 (406)
T ss_dssp -----HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcc
Confidence 0012233334445555 66666666554321 1111 1234555666666666
Q ss_pred ChhhHHHHHHHHHhCCC-CcC----HHHHHHHHHHHHhcCCcchHHHHHHHHHhcC----CCc-cchhHHHHHHHHhcCC
Q 010057 340 RRDGALLAFEYSVKMDL-NLE----RTAYLALIGILIKLNTFPKVAEIVEEMTKAG----HSL-GVYLGALLIHRLGSAR 409 (519)
Q Consensus 340 ~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g 409 (519)
++++|+..+++..+... .++ ..++..+...+...|++++|...+....+.. ..+ ...++..+...|...|
T Consensus 202 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 281 (406)
T 3sf4_A 202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 281 (406)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhC
Confidence 77777766666554310 011 1245566666666666666666666655321 000 1334455555566666
Q ss_pred CcchHHHHhhhCCcC---CCC----chhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 410 RPVPAAKIFSLLPED---QKC----TATYTALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 410 ~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
++++|.+.++..... .++ ..++..+...|...|++++|.+.+++..+
T Consensus 282 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 282 DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666544332 111 33455556666666666666666665543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-12 Score=120.61 Aligned_cols=300 Identities=10% Similarity=-0.056 Sum_probs=186.4
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-C
Q 010057 100 DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT----IVSYTAYMKILFLNDRVKEATDVYKEMIQR----GLPP-N 170 (519)
Q Consensus 100 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~ 170 (519)
....+......+...|++++|...|++..+.... + ..+|..+...+...|++++|...+++.... +-.| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444455555566666666666666665554211 1 234555666666666666666666654431 1111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCC--------------------hHHH
Q 010057 171 CYTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQP-DKAACNILIEKCCKAGE--------------------TRTI 225 (519)
Q Consensus 171 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~--------------------~~~a 225 (519)
..++..+...|...|++++|...+++..+. +-.+ ...++..+...|...|+ ++.|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 335566666777777777777777666532 1111 13367777788888888 7777
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCC
Q 010057 226 ILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKN 305 (519)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (519)
...++...+.. ...+..... ...+..+...+...|+
T Consensus 167 ~~~~~~al~~~---------------~~~~~~~~~-----------------------------~~~~~~la~~~~~~g~ 202 (406)
T 3sf4_A 167 VDFYEENLSLV---------------TALGDRAAQ-----------------------------GRAFGNLGNTHYLLGN 202 (406)
T ss_dssp HHHHHHHHHHH---------------HHTTCHHHH-----------------------------HHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHH---------------HhccCcHHH-----------------------------HHHHHHHHHHHHHccC
Confidence 77776654411 000000000 0134456678888999
Q ss_pred HHHHHHHHHHHHhcCC-Cc----cHHHHHHHHHHHhccCChhhHHHHHHHHHhC----CCCcC-HHHHHHHHHHHHhcCC
Q 010057 306 LVAIDSLLSGIMDKSI-QL----DSAVISTIIEVNCDHRRRDGALLAFEYSVKM----DLNLE-RTAYLALIGILIKLNT 375 (519)
Q Consensus 306 ~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~ 375 (519)
+++|...++....... .+ ....+..+...|...|++++|+..+++..+. +..+. ..++..+...+...|+
T Consensus 203 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 282 (406)
T 3sf4_A 203 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 282 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc
Confidence 9999999988654311 11 2347888888999999999999999988764 21111 4468888999999999
Q ss_pred cchHHHHHHHHHhcC----CC-ccchhHHHHHHHHhcCCCcchHHHHhhhCCcC---C----CCchhHHHHHHHHHhcCC
Q 010057 376 FPKVAEIVEEMTKAG----HS-LGVYLGALLIHRLGSARRPVPAAKIFSLLPED---Q----KCTATYTALIGVYFSAGS 443 (519)
Q Consensus 376 ~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~~~li~~~~~~g~ 443 (519)
+++|...+....+.. .. ....++..+...|...|++++|.+.+++..+. . ....++..+...|...|+
T Consensus 283 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 283 YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 999999999987532 11 12557778888999999999999998865432 0 112344455555555554
Q ss_pred H
Q 010057 444 A 444 (519)
Q Consensus 444 ~ 444 (519)
.
T Consensus 363 ~ 363 (406)
T 3sf4_A 363 S 363 (406)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-12 Score=118.21 Aligned_cols=134 Identities=13% Similarity=-0.051 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhcC----C-CccchhHHHHHHHHhcCCCcchHHHHhhhCCcC---CCC----ch
Q 010057 362 AYLALIGILIKLNTFPKVAEIVEEMTKAG----H-SLGVYLGALLIHRLGSARRPVPAAKIFSLLPED---QKC----TA 429 (519)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~----~~ 429 (519)
.+..+...+...|++++|.+.++...+.. . ......+..+...+...|++++|.+.+++.... .++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 46666667777777777777777665321 0 011225566666777777777777777655332 111 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRKG----IHP-SLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
++..+...|...|++++|.+.+++..+.. -.+ ...++..+...|.+.|++++|..++++..++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 77888899999999999999999887641 111 1446778888999999999999999998877553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-11 Score=113.20 Aligned_cols=300 Identities=8% Similarity=-0.017 Sum_probs=185.1
Q ss_pred hhhhhHHhhhccCChhHHHHHHHhC-----CC--CCCHHHHHHHHhcC-----CChHHHH-----------HHHHHHhhc
Q 010057 3 DTISNVYKILKYSTWDSAQDLLKNL-----PI--KWDSYTVNQVLKTH-----PPMEKAW-----------LFFNWVSRS 59 (519)
Q Consensus 3 ~~~~~i~~~~~~~~~~~a~~~~~~~-----~~--~p~~~~~~~ll~~~-----~~~~~A~-----------~~~~~~~~~ 59 (519)
..+......++.+++++|..+++++ .. .++...|-.++... ++.+.+. +.++.+...
T Consensus 14 ~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~ 93 (383)
T 3ulq_A 14 EKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK 93 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc
Confidence 3567778888899999999988877 33 23333344443321 2233333 555554211
Q ss_pred CCCCCCHHHH------HHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010057 60 RGFNHDRFTY------TTMLDIFGEAKRISSMKYVFELMQEK----GINI-DAVTYTSVMHWLSNAGDVDGAVNIWEEMK 128 (519)
Q Consensus 60 ~~~~~~~~~~------~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 128 (519)
+++...+ -.....+...|++++|...++...+. +-.+ ...++..+...|...|+++.|...+++..
T Consensus 94 ---~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al 170 (383)
T 3ulq_A 94 ---QARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY 170 (383)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111111 12455667778888888888887653 1111 23567778888888888888888888765
Q ss_pred HCC--C---C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010057 129 LKE--C---Y-PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGL-PPN----CYTYTVLMEYLVRAGKYEEALEIFSKM 197 (519)
Q Consensus 129 ~~~--~---~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m 197 (519)
+.. . . ....+++.+...|...|++++|...|++..+..- .++ ..++..+...|...|++++|...+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 171 EIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250 (383)
T ss_dssp HHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 431 1 1 1134677777888888888888888887664210 012 236777788888888888888888877
Q ss_pred HHc----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCccc
Q 010057 198 QEA----GV-QPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEF 272 (519)
Q Consensus 198 ~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 272 (519)
.+. +. +....++..+..+|.+.|++++|...+++..+.....
T Consensus 251 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------------- 297 (383)
T 3ulq_A 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA--------------------------------- 297 (383)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---------------------------------
Confidence 652 23 2234577778888888888888888887655421100
Q ss_pred ccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCC---hhhHHHHHH
Q 010057 273 ISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRR---RDGALLAFE 349 (519)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~ 349 (519)
+-......+..+...|...|+ .++|+.+++
T Consensus 298 -----------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~ 330 (383)
T 3ulq_A 298 -----------------------------------------------GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330 (383)
T ss_dssp -----------------------------------------------TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 000011224445566667777 566666665
Q ss_pred HHHhCCCCcC-HHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 010057 350 YSVKMDLNLE-RTAYLALIGILIKLNTFPKVAEIVEEMTK 388 (519)
Q Consensus 350 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (519)
.. +..|+ ...+..+...|...|++++|.+.++...+
T Consensus 331 ~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 331 SK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 54 32332 33466778888888888888888888765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.9e-12 Score=113.12 Aligned_cols=244 Identities=12% Similarity=0.081 Sum_probs=140.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC
Q 010057 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQR-------GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA------GV 202 (519)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~ 202 (519)
..++..+...+...|++++|..+|+++.+. ..+....++..+...|...|++++|...+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666677777777777777777776652 12223456677777777788888888777776543 11
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhh
Q 010057 203 QP-DKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEF 281 (519)
Q Consensus 203 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (519)
.| ...++..+...|...|++++|...+++..+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------------------------------------------- 141 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR--------------------------------------------- 141 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH---------------------------------------------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH---------------------------------------------
Confidence 22 34577788888889999999998888765521
Q ss_pred HHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhC------C
Q 010057 282 VTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM------D 355 (519)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~ 355 (519)
..............+..+...+...|++++|++.|+.+.+. +
T Consensus 142 --------------------------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 142 --------------------------------EKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp --------------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred --------------------------------HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 00000000112344666677778888888888888877664 2
Q ss_pred CCc-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcC-------CCccc-h------hHHHHHHHHhcCCCcchHHHHhhh
Q 010057 356 LNL-ERTAYLALIGILIKLNTFPKVAEIVEEMTKAG-------HSLGV-Y------LGALLIHRLGSARRPVPAAKIFSL 420 (519)
Q Consensus 356 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-~------~~~~l~~~~~~~g~~~~A~~~~~~ 420 (519)
..| ....+..+...+...|++++|.+.++.+.+.. ..+.. . .+..+...+...+.+.++...++.
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 269 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence 122 23457788888888999999998888887531 11111 1 111122223333445555555554
Q ss_pred CCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 421 LPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 421 ~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
.....| +..+|..+..+|.+.|++++|.++|++..+
T Consensus 270 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444322 344566666666666777777666666554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-12 Score=120.68 Aligned_cols=275 Identities=13% Similarity=0.006 Sum_probs=167.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHH
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTI----VSYTAYMKILFLNDRVKEATDVYKEMIQR----GL-PPNCYT 173 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~ 173 (519)
.+..+...+...|++++|...|++..+.... +. ..|..+...|...|++++|...+++..+. +- .....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444555666667777777777776655211 22 35666666777777777777777665542 11 112346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCC-----------------hHHHHHHHHH
Q 010057 174 YTVLMEYLVRAGKYEEALEIFSKMQEA----GVQP-DKAACNILIEKCCKAGE-----------------TRTIILILRY 231 (519)
Q Consensus 174 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~ 231 (519)
+..+...|...|++++|...+++..+. +-.| ...++..+...|...|+ ++.|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 667777777888888888887776543 1112 23477778888888888 6777666665
Q ss_pred HHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHH
Q 010057 232 MKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDS 311 (519)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 311 (519)
..+..
T Consensus 209 al~~~--------------------------------------------------------------------------- 213 (411)
T 4a1s_A 209 NLKLM--------------------------------------------------------------------------- 213 (411)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 43310
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCC-cC----HHHHHHHHHHHHhcCCcchHHHHHHHH
Q 010057 312 LLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLN-LE----RTAYLALIGILIKLNTFPKVAEIVEEM 386 (519)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 386 (519)
.... ........+..+...|...|++++|+..|++..+.... ++ ...+..+...+...|++++|...++..
T Consensus 214 --~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 214 --RDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp --HHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred --HHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 0000 00001224445555666666666666666665543110 11 124666677777777777777777776
Q ss_pred HhcCCC-----ccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC---C----CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 387 TKAGHS-----LGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ---K----CTATYTALIGVYFSAGSADKALKIYKTM 454 (519)
Q Consensus 387 ~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m 454 (519)
.+.... ....++..+...|...|++++|.+.+++..... + ...++..+..+|.+.|++++|.+.|++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 542110 123456667777777788877777777654321 1 1347788999999999999999999998
Q ss_pred HHC
Q 010057 455 CRK 457 (519)
Q Consensus 455 ~~~ 457 (519)
.+.
T Consensus 370 l~~ 372 (411)
T 4a1s_A 370 LQL 372 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-11 Score=111.60 Aligned_cols=274 Identities=14% Similarity=0.049 Sum_probs=167.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHH
Q 010057 104 YTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT----IVSYTAYMKILFLNDRVKEATDVYKEMIQR----GLPP-NCYTY 174 (519)
Q Consensus 104 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~ 174 (519)
+......+...|++++|...|++..+.... + ...+..+...+...|++++|.+.+++..+. +-.| ...++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455666667777777777776654211 2 245666666777777777777777665432 1111 23456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCC--------------------hHHHHHHH
Q 010057 175 TVLMEYLVRAGKYEEALEIFSKMQEAG-VQPD----KAACNILIEKCCKAGE--------------------TRTIILIL 229 (519)
Q Consensus 175 ~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~~ 229 (519)
..+...+...|++++|...+++..+.. -.++ ..++..+...|...|+ ++.|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 677777778888888888877765421 0112 3367777778888888 66666666
Q ss_pred HHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHH
Q 010057 230 RYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAI 309 (519)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 309 (519)
++.....
T Consensus 167 ~~a~~~~------------------------------------------------------------------------- 173 (338)
T 3ro2_A 167 EENLSLV------------------------------------------------------------------------- 173 (338)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 5543310
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhC----CCC-cCHHHHHHHHHHHHhcCCcchHHHHHH
Q 010057 310 DSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM----DLN-LERTAYLALIGILIKLNTFPKVAEIVE 384 (519)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 384 (519)
.... ........+..+...+...|++++|+..++...+. +.. ....++..+...+...|++++|...++
T Consensus 174 ----~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 174 ----TALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp ----HHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ----HhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0000 00001234455556666677777777777666543 111 112256677777778888888888877
Q ss_pred HHHhcC----CC-ccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC---C----CchhHHHHHHHHHhcCCHHHHHHHHH
Q 010057 385 EMTKAG----HS-LGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ---K----CTATYTALIGVYFSAGSADKALKIYK 452 (519)
Q Consensus 385 ~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~ 452 (519)
...+.. .. ....++..+...+...|++++|...+++..... + ...++..+...|.+.|++++|.+.++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 766421 11 114456667777888888888888877654321 1 13477889999999999999999999
Q ss_pred HHHHC
Q 010057 453 TMCRK 457 (519)
Q Consensus 453 ~m~~~ 457 (519)
+..+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98875
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-10 Score=94.15 Aligned_cols=169 Identities=12% Similarity=0.065 Sum_probs=144.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHH
Q 010057 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYM 143 (519)
Q Consensus 64 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 143 (519)
.++.+|..+...|.+.|++++|.+.|++..+.... +..++..+..++.+.|++++|...+......... +...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 46778999999999999999999999999887544 6788999999999999999999999998776422 567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 010057 144 KILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETR 223 (519)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 223 (519)
..+...++++.|...+.+..... +-+...+..+...|.+.|++++|++.|++..+.. +.+..++..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 88999999999999999988763 3467888999999999999999999999998763 336678999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 010057 224 TIILILRYMKENR 236 (519)
Q Consensus 224 ~a~~~~~~~~~~~ 236 (519)
+|...|++..+..
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999887754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-10 Score=103.00 Aligned_cols=166 Identities=10% Similarity=0.060 Sum_probs=101.2
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhCCCCcC-HH-HHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHH
Q 010057 327 VISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE-RT-AYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHR 404 (519)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 404 (519)
.|..+...+...|++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|+...+.. +.+...+......
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~ 177 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4555555566666677777777666653 232 22 56666666666777777777777776643 2233333332222
Q ss_pred -HhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--cccHHHHHHHHHhcCCh
Q 010057 405 -LGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKG-IHPS--LGTFNVLLAGLEKLGRV 479 (519)
Q Consensus 405 -~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~l~~~~~~~g~~ 479 (519)
+...|+.++|.++|++..+. +.+...|..++..+.+.|++++|..+|++..+.. ++|+ ...|..++....+.|+.
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 12256777777777665443 3345667777777777777777777777777652 3442 34566666666677777
Q ss_pred hHHHHHHHHhcccCcc
Q 010057 480 SDAEIYRKEKKSIQAD 495 (519)
Q Consensus 480 ~~a~~~~~~~~~~~~~ 495 (519)
++|..+++++.+..|+
T Consensus 258 ~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 258 ASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHccc
Confidence 7777777777776664
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-08 Score=100.15 Aligned_cols=438 Identities=11% Similarity=0.074 Sum_probs=263.3
Q ss_pred hhHHHHHHHhC--CCCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC---hhHHHHH
Q 010057 17 WDSAQDLLKNL--PIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKR---ISSMKYV 88 (519)
Q Consensus 17 ~~~a~~~~~~~--~~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~ 88 (519)
..+.+..|++. ..+-|...|..++..+ +..+.+..+|+.+.... +.....|...+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 33344444443 3345677777777643 67888888888887543 6677778888888777777 8888888
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHhcCCh--------hhHHHHHHHHHH-CCC-CCC-hhhHHHHHHHHH---------
Q 010057 89 FELMQEKG-INIDAVTYTSVMHWLSNAGDV--------DGAVNIWEEMKL-KEC-YPT-IVSYTAYMKILF--------- 147 (519)
Q Consensus 89 ~~~m~~~~-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~p~-~~~~~~li~~~~--------- 147 (519)
|+...... ..|++..|..-+....+.++. +.+.++|+.... .|. .|+ ...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 88887753 136777888777766665543 234467776543 355 454 456777665433
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHH----------HHcCCHHHHHHHHHHHHHc--CCC---------
Q 010057 148 LNDRVKEATDVYKEMIQRGLPPNCYTYTV---LMEYL----------VRAGKYEEALEIFSKMQEA--GVQ--------- 203 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---li~~~----------~~~~~~~~a~~~~~~m~~~--g~~--------- 203 (519)
..++.+.+..+|+..+......-..+|.. +-..+ -...+++.|...+.++... ++.
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 23456778888888775311111223322 11110 0112345566666554321 111
Q ss_pred ------C-----C---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHh
Q 010057 204 ------P-----D---KAACNILIEKCCKAG-------ETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLW 262 (519)
Q Consensus 204 ------p-----~---~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 262 (519)
| + ...|...+.---..+ ..+.+..+|++....-.. ....+.....-+...++.+...+
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 134444444322222 123455667776654332 22222222222222222111100
Q ss_pred hhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCc----------
Q 010057 263 QVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKS---------IQL---------- 323 (519)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~---------- 323 (519)
...............++-..+...-..|+++.|..+++.+.... -.|
T Consensus 365 --------------~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~ 430 (679)
T 4e6h_A 365 --------------KYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK 430 (679)
T ss_dssp --------------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred --------------HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence 00000111111222334456667778899999999999887531 013
Q ss_pred --cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-CCcchHHHHHHHHHhcCCCccchhHHH
Q 010057 324 --DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKL-NTFPKVAEIVEEMTKAGHSLGVYLGAL 400 (519)
Q Consensus 324 --~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ 400 (519)
...+|...++...+.|..+.|..+|..+++.-..+....|......-.+. ++.+.|..+|+..++. ++.+...+..
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~ 509 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINK 509 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHH
Confidence 12367777777778899999999999998761122334454433333444 4589999999999986 4556667778
Q ss_pred HHHHHhcCCCcchHHHHhhhCCcCCC----CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 010057 401 LIHRLGSARRPVPAAKIFSLLPEDQK----CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLE 474 (519)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~ 474 (519)
.++.....|+.+.|..+|++.....| ....|...+..-.+.|+.+.+.++.+++.+. .|+......+.+-|.
T Consensus 510 y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 510 YLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhc
Confidence 88888889999999999999877644 2468889999889999999999999999988 677666666666553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=3e-11 Score=109.22 Aligned_cols=248 Identities=12% Similarity=0.019 Sum_probs=166.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHH
Q 010057 170 NCYTYTVLMEYLVRAGKYEEALEIFSKMQEA-------GVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYP 242 (519)
Q Consensus 170 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 242 (519)
+..++..+...+...|++++|..+++++.+. .......++..+...|...|++++|...+++..+..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------ 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------
Confidence 4567888999999999999999999998763 223345578888999999999999999988765521
Q ss_pred HHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010057 243 VFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQ 322 (519)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 322 (519)
.........
T Consensus 100 -----------------------------------------------------------------------~~~~~~~~~ 108 (311)
T 3nf1_A 100 -----------------------------------------------------------------------EKTLGKDHP 108 (311)
T ss_dssp -----------------------------------------------------------------------HHHHCTTCH
T ss_pred -----------------------------------------------------------------------HHHhCCCCh
Confidence 010000111
Q ss_pred ccHHHHHHHHHHHhccCChhhHHHHHHHHHhC------CCCc-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhc------
Q 010057 323 LDSAVISTIIEVNCDHRRRDGALLAFEYSVKM------DLNL-ERTAYLALIGILIKLNTFPKVAEIVEEMTKA------ 389 (519)
Q Consensus 323 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 389 (519)
.....+..+...|...|++++|+..|+++.+. +..| ....+..+...+...|++++|.+.++.+.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 13445667777888889999999888887764 2222 3445888889999999999999999998764
Q ss_pred C-CCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC---------CC-Cch------hHHHHHHHHHhcCCHHHHHHHHH
Q 010057 390 G-HSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED---------QK-CTA------TYTALIGVYFSAGSADKALKIYK 452 (519)
Q Consensus 390 ~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~-~~~------~~~~li~~~~~~g~~~~A~~~~~ 452 (519)
+ .+....++..+...|...|++++|.+.++++.+. .+ +.. .+..+...+...+.+.+|...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 2 1223456777888899999999999988876532 11 111 22223333444455555666666
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 453 TMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 453 ~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
...... +.+..++..+..+|.+.|++++|.+++++..++.|+
T Consensus 269 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 269 ACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 665442 334677888999999999999999999999877654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.7e-10 Score=103.94 Aligned_cols=314 Identities=11% Similarity=-0.005 Sum_probs=183.5
Q ss_pred CCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHhC--CC--CCCHHHHHHHHHHH--HhcCChhhHH---------HHHH
Q 010057 63 NHDRFTYTTMLDIF--GEAKRISSMKYVFELMQEK--GI--NIDAVTYTSVMHWL--SNAGDVDGAV---------NIWE 125 (519)
Q Consensus 63 ~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~--~~--~~~~~~~~~li~~~--~~~g~~~~a~---------~~~~ 125 (519)
.|+..+-+.+-.-| ...+++++|.++++++.+. .+ .++...|-.++..- .-.+..+.+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45555555555555 6788899999888887552 12 22334444444321 1123333333 6666
Q ss_pred HHHHCCCCCCh-h---hHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010057 126 EMKLKECYPTI-V---SYTAYMKILFLNDRVKEATDVYKEMIQRG-LPPN----CYTYTVLMEYLVRAGKYEEALEIFSK 196 (519)
Q Consensus 126 ~m~~~~~~p~~-~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~ 196 (519)
.+.....+.+. . .+......+...|++++|...|++..+.- -.++ ..++..+...|...|+++.|...+.+
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 66443111111 1 12233445678899999999999887631 1123 34677888899999999999999988
Q ss_pred HHHc----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCc
Q 010057 197 MQEA----G-VQP-DKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSP 270 (519)
Q Consensus 197 m~~~----g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 270 (519)
..+. + ..+ ...+++.+..+|...|+++.|...+++..+.... .+.
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~---------------~~~-------------- 217 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD---------------IQN-------------- 217 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------TTC--------------
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH---------------cCC--------------
Confidence 7643 1 111 2447778888999999999999998876541100 000
Q ss_pred ccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHH
Q 010057 271 EFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEY 350 (519)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (519)
......++..+...|...|++++|+..|++
T Consensus 218 --------------------------------------------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 218 --------------------------------------------------DRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 001123456666777788888888888887
Q ss_pred HHhC----CCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCC----ccchhHHHHHHHHhcCCC---cchHHHHhh
Q 010057 351 SVKM----DLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHS----LGVYLGALLIHRLGSARR---PVPAAKIFS 419 (519)
Q Consensus 351 ~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 419 (519)
..+. +.+....++..+...+.+.|++++|...++...+..-. .....+..+...+...++ +.+|...++
T Consensus 248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 7761 21223566788888888889999998888888763211 112223333344444454 455555554
Q ss_pred hCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010057 420 LLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMC 455 (519)
Q Consensus 420 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 455 (519)
.....+.....+..+...|...|++++|.+.|++..
T Consensus 328 ~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 328 KKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 432211112334445555555555555555555543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-09 Score=101.58 Aligned_cols=273 Identities=11% Similarity=0.021 Sum_probs=166.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHH
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQRGLPPNCY----TYTVLMEYLVRAGKYEEALEIFSKMQEAGV-QPDK----AACNIL 212 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~l 212 (519)
....+...|++++|...+++.....-..+.. +++.+...+...|++++|...+++...... .++. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3345556788888888887776643222222 455666777788888888888887654210 1122 245667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcc
Q 010057 213 IEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSI 292 (519)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (519)
...+...|+++.|...+++..+...
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~------------------------------------------------------- 124 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLIN------------------------------------------------------- 124 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------------------------------
Confidence 7788888999999988887654210
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhcCCC--c-cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCC--c--CHHHHHH
Q 010057 293 DQGLVLILLKKKNLVAIDSLLSGIMDKSIQ--L-DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLN--L--ERTAYLA 365 (519)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~~ 365 (519)
..+.. | ....+..+...+...|++++|...+++..+.... + ....+..
T Consensus 125 -------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 125 -------------------------EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp -------------------------HTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred -------------------------HhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 00000 1 1223444555666777777777777776653211 1 1234666
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCcc-chhHH-----HHHHHHhcCCCcchHHHHhhhCCcCCCC-----chhHHHH
Q 010057 366 LIGILIKLNTFPKVAEIVEEMTKAGHSLG-VYLGA-----LLIHRLGSARRPVPAAKIFSLLPEDQKC-----TATYTAL 434 (519)
Q Consensus 366 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~l 434 (519)
+...+...|++++|...++......-.++ ...+. ..+..+...|+.++|...++......+. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77777788888888888877764311111 11111 2233466788888888888777654221 1245667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 435 IGVYFSAGSADKALKIYKTMCRK----GIHPSL-GTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 435 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
...+...|++++|...+++..+. |..++. ..+..+..++...|+.++|...+++..++.+
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 77788888888888888877543 222222 2555566777888888888888887766543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-09 Score=95.24 Aligned_cols=218 Identities=12% Similarity=0.121 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------hcCCh-------hhHHHHHHHHHHCCCCC-ChhhHHHHHHHHH
Q 010057 83 SSMKYVFELMQEKGINIDAVTYTSVMHWLS-------NAGDV-------DGAVNIWEEMKLKECYP-TIVSYTAYMKILF 147 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~ 147 (519)
++|..+|+...+... -+...|..+...+. +.|+. ++|..+|++..+. +.| +...|..+...+.
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 566677777766432 25667776666654 34665 7777777777662 123 4456777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHH
Q 010057 148 LNDRVKEATDVYKEMIQRGLPPN-CY-TYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCC-KAGETRT 224 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~ 224 (519)
+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.. +++...|........ ..|+++.
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 777777787777777763 343 33 67777777777777777777777777643 223334433332222 2577777
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcC
Q 010057 225 IILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKK 304 (519)
Q Consensus 225 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (519)
|..+|+...+...
T Consensus 188 A~~~~~~al~~~p------------------------------------------------------------------- 200 (308)
T 2ond_A 188 AFKIFELGLKKYG------------------------------------------------------------------- 200 (308)
T ss_dssp HHHHHHHHHHHHT-------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCC-------------------------------------------------------------------
Confidence 7777666544211
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCC-CCc--CHHHHHHHHHHHHhcCCcchHHH
Q 010057 305 NLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMD-LNL--ERTAYLALIGILIKLNTFPKVAE 381 (519)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~ 381 (519)
-+...|..++..+...|+.++|..+|++..+.. ..| ....|..++....+.|+.+.|..
T Consensus 201 ------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 201 ------------------DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp ------------------TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 134556666777777888888888888888763 344 34567777888888888888888
Q ss_pred HHHHHHhcC
Q 010057 382 IVEEMTKAG 390 (519)
Q Consensus 382 ~~~~~~~~~ 390 (519)
+++.+.+..
T Consensus 263 ~~~~a~~~~ 271 (308)
T 2ond_A 263 VEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 888887653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-10 Score=110.61 Aligned_cols=185 Identities=10% Similarity=-0.020 Sum_probs=141.1
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 010057 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRI-SSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIW 124 (519)
Q Consensus 46 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 124 (519)
++++++.++..... .+.+...+..+...+...|++ ++|.+.|+...+.... +...|..+..+|...|++++|...|
T Consensus 84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55666677665422 244677888888888888888 8888888888776432 5778888888888888888888888
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCH
Q 010057 125 EEMKLKECYPTIVSYTAYMKILFLN---------DRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA--------GKY 187 (519)
Q Consensus 125 ~~m~~~~~~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------~~~ 187 (519)
++..+. .|+...+..+...+... |++++|.+.|++..+.. +-+...|..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 888776 46667788888888888 88888888888888753 33577888888888887 888
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 188 EEALEIFSKMQEAGVQ--PDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 188 ~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
++|...|++..+.... -+...|..+..+|...|++++|...|++..+..
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888774210 267788888888888888888888888776643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.4e-10 Score=109.53 Aligned_cols=215 Identities=12% Similarity=-0.017 Sum_probs=154.1
Q ss_pred hhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010057 117 VDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRV-KEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFS 195 (519)
Q Consensus 117 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 195 (519)
++++...+++..... +.+...+..+...+...|++ ++|.+.|++..+.. +-+...|..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666676655442 23677888888899999999 99999999988763 2357889999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCC
Q 010057 196 KMQEAGVQPDKAACNILIEKCCKA---------GETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHP 266 (519)
Q Consensus 196 ~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 266 (519)
...+. .|+...+..+..+|... |++++|...+++..+....
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------------------------- 211 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL---------------------------- 211 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT----------------------------
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC----------------------------
Confidence 99875 57778888888888888 8888888888877664321
Q ss_pred CCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcc--------
Q 010057 267 QFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDH-------- 338 (519)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 338 (519)
+...+..+..+|...
T Consensus 212 ---------------------------------------------------------~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 212 ---------------------------------------------------------DGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp ---------------------------------------------------------CHHHHHHHHHHHHHHHHHTTCCH
T ss_pred ---------------------------------------------------------CHHHHHHHHHHHHHHHHhhcccc
Confidence 233444455555555
Q ss_pred CChhhHHHHHHHHHhCCCC--cCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHH
Q 010057 339 RRRDGALLAFEYSVKMDLN--LERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAK 416 (519)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 416 (519)
|++++|+..|++..+.... -+...|..+..+|...|++++|.+.|+...+.. +.+...+..+...+...|++++|.+
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888775411 366678888888888888888888888887754 2333444555555555555555555
Q ss_pred HhhhC
Q 010057 417 IFSLL 421 (519)
Q Consensus 417 ~~~~~ 421 (519)
.+..+
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 44443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=4.4e-11 Score=98.93 Aligned_cols=169 Identities=14% Similarity=0.057 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHH
Q 010057 325 SAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHR 404 (519)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 404 (519)
...+..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456666777888889999999888877653 3456778888888899999999999999988764 4466777888888
Q ss_pred HhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHH
Q 010057 405 LGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAE 483 (519)
Q Consensus 405 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~ 483 (519)
+...|++++|.+.++++... +.+...+..+...|...|++++|++.++++.+.. +.+...+..+...+...|++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 88999999999999877654 3457788899999999999999999999998874 445778888999999999999999
Q ss_pred HHHHHhcccCccc
Q 010057 484 IYRKEKKSIQADA 496 (519)
Q Consensus 484 ~~~~~~~~~~~~~ 496 (519)
.+++++.++.|+.
T Consensus 165 ~~~~~~~~~~~~~ 177 (186)
T 3as5_A 165 PHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCc
Confidence 9999998876653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.4e-11 Score=119.33 Aligned_cols=173 Identities=13% Similarity=0.078 Sum_probs=151.0
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHH
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIH 403 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 403 (519)
+...++.+...|.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.|++.++.. +-+...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45678889999999999999999999998865 3356779999999999999999999999999875 456778899999
Q ss_pred HHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHH
Q 010057 404 RLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482 (519)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a 482 (519)
+|...|++++|.+.|++..+..| +...|+.+..+|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999998877544 57899999999999999999999999999873 33467888999999999999999
Q ss_pred HHHHHHhcccCcccccc
Q 010057 483 EIYRKEKKSIQADALSK 499 (519)
Q Consensus 483 ~~~~~~~~~~~~~~~~~ 499 (519)
.+.++++.++.++....
T Consensus 165 ~~~~~kal~l~~~~~~~ 181 (723)
T 4gyw_A 165 DERMKKLVSIVADQLEK 181 (723)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhChhHHhh
Confidence 99999999888775544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-09 Score=89.51 Aligned_cols=166 Identities=13% Similarity=0.076 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
...|..+...+...|++++|...++.+.+... .+..++..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34577778888889999999999988877543 367888888999999999999999999987763 3367788888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTI 225 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 225 (519)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988763 4477888889999999999999999999988763 34677888999999999999999
Q ss_pred HHHHHHHHHc
Q 010057 226 ILILRYMKEN 235 (519)
Q Consensus 226 ~~~~~~~~~~ 235 (519)
...++...+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999887664
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-09 Score=100.80 Aligned_cols=231 Identities=11% Similarity=-0.040 Sum_probs=151.0
Q ss_pred hhhhhHHhhhccCChhHHHHHHHhC-----C--CCCCHHHHHHHHhc--------CCChH------HHHHHHHHHhhcCC
Q 010057 3 DTISNVYKILKYSTWDSAQDLLKNL-----P--IKWDSYTVNQVLKT--------HPPME------KAWLFFNWVSRSRG 61 (519)
Q Consensus 3 ~~~~~i~~~~~~~~~~~a~~~~~~~-----~--~~p~~~~~~~ll~~--------~~~~~------~A~~~~~~~~~~~~ 61 (519)
.++...+..++.+++++|.++++++ . ..++...|-.++.. ..... ...+.++.+....
T Consensus 14 ~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~- 92 (378)
T 3q15_A 14 VKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQ- 92 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGG-
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccC-
Confidence 4667788889999999999999876 2 22333333444331 11111 1224555442111
Q ss_pred CCC-CH----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCChhhHHHHHHHHHHC-
Q 010057 62 FNH-DR----FTYTTMLDIFGEAKRISSMKYVFELMQEKGI-NI----DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK- 130 (519)
Q Consensus 62 ~~~-~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 130 (519)
.+ +. ..+-.....+...|++++|...|+...+... .+ ...++..+...|...|+++.|...+++..+.
T Consensus 93 -~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 93 -KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11 11 1223334456778999999999988765311 11 2457778888888999999999888887543
Q ss_pred ---CC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010057 131 ---EC-YP-TIVSYTAYMKILFLNDRVKEATDVYKEMIQR----GLPP-NCYTYTVLMEYLVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 131 ---~~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 200 (519)
+- .+ ...+++.+...|...|++++|.+.|++..+. +-.+ ...++..+...|...|++++|...+++..+.
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11 11 2456778888889999999999988887652 1111 1346777888888899999999998887651
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 201 ----GVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 201 ----g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
+.+....++..+..+|.+.|++++|...+++..+.
T Consensus 252 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 252 SREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 22223567788888888999999999888876663
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-10 Score=98.18 Aligned_cols=195 Identities=11% Similarity=0.009 Sum_probs=116.6
Q ss_pred chhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010057 292 IDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILI 371 (519)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (519)
.+......+...|++++|...|+........++...+..+..++...|++++|+..|+...+.. +-+...+..+..++.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence 3344455666677777777777776665543455555556666777777777777777766554 223445666667777
Q ss_pred hcCCcchHHHHHHHHHhcCCCccc-------hhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC---chhHHHHHHHHHhc
Q 010057 372 KLNTFPKVAEIVEEMTKAGHSLGV-------YLGALLIHRLGSARRPVPAAKIFSLLPEDQKC---TATYTALIGVYFSA 441 (519)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~~ 441 (519)
..|++++|...++...+.. +.+. ..+..+...+...|++++|.+.|++..+..|+ ...|..+..+|...
T Consensus 88 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 7777777777777776643 2223 33555556666667777777777666655443 44555666665443
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 442 GSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 442 g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
| ..+++++...+ ..+...+... .....+.+++|..++++..++.|+.
T Consensus 167 ~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 167 G-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp H-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred H-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 3 23344444442 2222222222 2233455699999999999987764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-09 Score=97.08 Aligned_cols=232 Identities=13% Similarity=0.079 Sum_probs=136.3
Q ss_pred hcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHH
Q 010057 148 LNDRVKEATDVYKEMIQ-------RGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA------GVQP-DKAACNILI 213 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~li 213 (519)
..|++++|..+|++..+ ...+....++..+...|...|++++|...+++..+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555554443 111223456777777777888888888887777643 1122 344778888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcch
Q 010057 214 EKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSID 293 (519)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (519)
.+|...|++++|...+++..+..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~--------------------------------------------------------- 115 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIR--------------------------------------------------------- 115 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHH---------------------------------------------------------
T ss_pred HHHHHhccHHHHHHHHHHHHHHH---------------------------------------------------------
Confidence 88999999999998888765521
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhC------CCCc-CHHHHHHH
Q 010057 294 QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM------DLNL-ERTAYLAL 366 (519)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 366 (519)
..............+..+...|...|++++|+..|+++.+. +..| ...++..+
T Consensus 116 --------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 175 (283)
T 3edt_B 116 --------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL 175 (283)
T ss_dssp --------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred --------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 00000000112345666777788888888888888877664 1122 34558888
Q ss_pred HHHHHhcCCcchHHHHHHHHHhc-------CCCc-cchhHHHHHHHHhcCCC------cchHHHHhhhCCcCCC-CchhH
Q 010057 367 IGILIKLNTFPKVAEIVEEMTKA-------GHSL-GVYLGALLIHRLGSARR------PVPAAKIFSLLPEDQK-CTATY 431 (519)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~-~~~~~ 431 (519)
...+...|++++|...++.+.+. ...+ ....+..+...+...+. +..+...++......| ...++
T Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (283)
T 3edt_B 176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTL 255 (283)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 88999999999999999888753 1122 22233333333333222 2233333333333222 24567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 432 TALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 432 ~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
..+...|...|++++|.++|++..+
T Consensus 256 ~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 256 RSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777778888888888888877664
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-08 Score=94.13 Aligned_cols=274 Identities=11% Similarity=0.008 Sum_probs=165.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChhhHHHHHHHHHHCCC-CCC----hhhHH
Q 010057 70 TTMLDIFGEAKRISSMKYVFELMQEKGINIDAV----TYTSVMHWLSNAGDVDGAVNIWEEMKLKEC-YPT----IVSYT 140 (519)
Q Consensus 70 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~ 140 (519)
......+...|++++|...++...+.....+.. +++.+...+...|++++|...+++...... .++ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445667888999988888877653222222 456666778888999999998888765311 011 23356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHHHH
Q 010057 141 AYMKILFLNDRVKEATDVYKEMIQR----GLP--PN-CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQ----PDKAAC 209 (519)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~--p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~~~ 209 (519)
.+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++....... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6777888999999999999887652 222 22 345667888889999999999999988754211 124577
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCccCH-HHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCC
Q 010057 210 NILIEKCCKAGETRTIILILRYMKENRLALRY-PVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEG 288 (519)
Q Consensus 210 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (519)
..+...+...|++++|...+++.......+.. ..+...
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~----------------------------------------- 216 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN----------------------------------------- 216 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH-----------------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH-----------------------------------------
Confidence 78888999999999999999987653211110 000000
Q ss_pred CCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHhccCChhhHHHHHHHHHhC----CCCcCH-
Q 010057 289 PLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQL---DSAVISTIIEVNCDHRRRDGALLAFEYSVKM----DLNLER- 360 (519)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~- 360 (519)
........+...|+.+.|...+.........+ ....+..+...+...|++++|...++..... +..++.
T Consensus 217 ---~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 293 (373)
T 1hz4_A 217 ---ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN 293 (373)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHH
Confidence 00011223455666677666666654322111 1223445555666666666666666655432 211111
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHH
Q 010057 361 TAYLALIGILIKLNTFPKVAEIVEEMT 387 (519)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 387 (519)
..+..+..++...|+.++|...+....
T Consensus 294 ~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 294 RNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 134444555556666666666655554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.9e-09 Score=106.26 Aligned_cols=166 Identities=14% Similarity=0.038 Sum_probs=140.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 65 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
+...|+.+...|.+.|++++|.+.|++..+.... +...|+.+..+|.+.|++++|++.|++..+.... +..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4678999999999999999999999999886433 5788999999999999999999999998876322 5778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010057 145 ILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRT 224 (519)
Q Consensus 145 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 224 (519)
++.+.|++++|++.|++..+.. +-+...|+.+...|...|++++|++.|++..+.. +-+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999988853 2257789999999999999999999999998753 2256688999999999999999
Q ss_pred HHHHHHHHHH
Q 010057 225 IILILRYMKE 234 (519)
Q Consensus 225 a~~~~~~~~~ 234 (519)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888887655
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-08 Score=86.33 Aligned_cols=179 Identities=11% Similarity=0.016 Sum_probs=96.6
Q ss_pred CChHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFN-HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 122 (519)
|++++|++.|+...+.. + ++...+..+...+...|++++|...++...+.... +...|..+...+...|++++|..
T Consensus 21 ~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~ 97 (228)
T 4i17_A 21 KNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYRDMKNNQEYIA 97 (228)
T ss_dssp TCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHcccHHHHHH
Confidence 66666666666655332 2 45555555666666666666666666666655322 44556666666666666666666
Q ss_pred HHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHH
Q 010057 123 IWEEMKLKECYPTI-------VSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN---CYTYTVLMEYLVRAGKYEEALE 192 (519)
Q Consensus 123 ~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~a~~ 192 (519)
.|++..+.... +. ..|..+...+...|++++|.+.|++..+. .|+ ...+..+..+|...| ..
T Consensus 98 ~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~-----~~ 169 (228)
T 4i17_A 98 TLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNG-----AD 169 (228)
T ss_dssp HHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHH-----HH
Confidence 66666554211 22 33555555566666666666666666653 343 334445555544332 22
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 193 IFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 193 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
+++.+...+ ..+...|.... ....+.+++|...++...+..
T Consensus 170 ~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 170 VLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 333333321 11233333322 222344588888888877754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.12 E-value=4.5e-10 Score=99.84 Aligned_cols=169 Identities=12% Similarity=0.064 Sum_probs=127.1
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhC------CCCc-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhc------C
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKM------DLNL-ERTAYLALIGILIKLNTFPKVAEIVEEMTKA------G 390 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 390 (519)
...++..+...|...|++++|+..|+++.+. +-.| ...++..+...+...|++++|.+.+....+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4567778888888889999999888887754 2222 3445888888888899999998888888754 1
Q ss_pred -CCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC--------CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 010057 391 -HSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED--------QK-CTATYTALIGVYFSAGSADKALKIYKTMCRK--- 457 (519)
Q Consensus 391 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 457 (519)
.+.....+..+...|...|++++|.+.+++.... .| ...++..+..+|...|++++|++++++..+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1234567777888888899999988888766443 22 2457788888888999999999998887753
Q ss_pred ---------------------------------------------CCCCCcccHHHHHHHHHhcCChhHHHHHHHHhccc
Q 010057 458 ---------------------------------------------GIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 458 ---------------------------------------------g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
..+....++..+...|...|++++|..++++..++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11122446778888999999999999999988664
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=9.3e-09 Score=91.77 Aligned_cols=222 Identities=9% Similarity=0.020 Sum_probs=123.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHH
Q 010057 151 RVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQPD-KAACNILIEKCCKAGETRTI 225 (519)
Q Consensus 151 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a 225 (519)
++++|...|++. ...|...|++++|...|.+..+. |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 33566778888888888776542 22222 35777888888888888888
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCC
Q 010057 226 ILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKN 305 (519)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (519)
...++...+.. ...|+
T Consensus 97 ~~~~~~Al~l~----------------------------------------------------------------~~~g~ 112 (292)
T 1qqe_A 97 VDSLENAIQIF----------------------------------------------------------------THRGQ 112 (292)
T ss_dssp HHHHHHHHHHH----------------------------------------------------------------HHTTC
T ss_pred HHHHHHHHHHH----------------------------------------------------------------HHcCC
Confidence 88877655411 01111
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcc-CChhhHHHHHHHHHhCCCCc-C----HHHHHHHHHHHHhcCCcchH
Q 010057 306 LVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDH-RRRDGALLAFEYSVKMDLNL-E----RTAYLALIGILIKLNTFPKV 379 (519)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a 379 (519)
...+ ..++..+...|... |++++|+..|++..+..... + ..++..+...+.+.|++++|
T Consensus 113 ~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 113 FRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 1111 22344555666664 78888888887766531100 1 23466666777777777777
Q ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 010057 380 AEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGI 459 (519)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 459 (519)
...|+...+.........+. ....|..+..+|...|++++|+..|++..+.
T Consensus 178 ~~~~~~al~~~~~~~~~~~~---------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-- 228 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWS---------------------------LKDYFLKKGLCQLAATDAVAAARTLQEGQSE-- 228 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGG---------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHHHhcCCcccHH---------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 77777776643211110000 0113455556666666666666666665543
Q ss_pred CCCcc------cHHHHHHHHH--hcCChhHHHHHHHHhcccCcc
Q 010057 460 HPSLG------TFNVLLAGLE--KLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 460 ~p~~~------t~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.|+.. .+..+..+|. ..+++++|...|+++..++|.
T Consensus 229 ~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 229 DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp ---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 23211 2333444443 345566677777666555553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.05 E-value=3.2e-07 Score=87.84 Aligned_cols=376 Identities=7% Similarity=-0.040 Sum_probs=218.0
Q ss_pred cC-ChhHHHHHHHhC-CCCCCHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHH
Q 010057 14 YS-TWDSAQDLLKNL-PIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKR-ISSMKYVFE 90 (519)
Q Consensus 14 ~~-~~~~a~~~~~~~-~~~p~~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~ 90 (519)
.| +++.|+.+|+++ ..-|. ++.+.+.++|+..+.. .|++..|...+....+.++ .+.+..+|+
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~-----------~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS-----------KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred cCcchHHHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 45 377778888766 22233 6788999999988642 5788899888888877763 456677777
Q ss_pred HHHhC-CCC-CCHHHHHHHHHHHH----hcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh-------------cCC
Q 010057 91 LMQEK-GIN-IDAVTYTSVMHWLS----NAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL-------------NDR 151 (519)
Q Consensus 91 ~m~~~-~~~-~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-------------~~~ 151 (519)
..... |.. .+...|...+..+. ..|+.+.+..+|++........-...|......-.. .+.
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~ 152 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPI 152 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHH
Confidence 76653 432 36677887777654 245678888888888763111111223222221100 112
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010057 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG--K-----YEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRT 224 (519)
Q Consensus 152 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~--~-----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 224 (519)
+..|..+++++...--..+...|...+..-...+ - .+.+..+|+++... .+-+...|...+.-+.+.|+.+.
T Consensus 153 y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 153 FQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 2334444444432100013345555554432211 1 34567888888775 34457788888888889999999
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcC
Q 010057 225 IILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKK 304 (519)
Q Consensus 225 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (519)
|..+++..... |....+......+. +.+... ..+...+. ..
T Consensus 232 ar~i~erAi~~---P~~~~l~~~y~~~~---e~~~~~--------------------------------~~l~~~~~-~~ 272 (493)
T 2uy1_A 232 AKKVVERGIEM---SDGMFLSLYYGLVM---DEEAVY--------------------------------GDLKRKYS-MG 272 (493)
T ss_dssp HHHHHHHHHHH---CCSSHHHHHHHHHT---TCTHHH--------------------------------HHHHHHTC---
T ss_pred HHHHHHHHHhC---CCcHHHHHHHHhhc---chhHHH--------------------------------HHHHHHHH-hh
Confidence 99999998887 33322222111110 000000 00000000 00
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHh-cCCcchHHHHH
Q 010057 305 NLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIK-LNTFPKVAEIV 383 (519)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~ 383 (519)
..+.. ... .......+|...+..+.+.+..+.|..+|..+ +.. ..+...|......-.. .++.+.|..+|
T Consensus 273 ~~~~~-----~~~--~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 273 EAESA-----EKV--FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred ccchh-----hhh--cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 00000 000 00012245666666666677899999999988 321 2344444432222222 34699999999
Q ss_pred HHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 384 EEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
+...+.. +.++..+...++...+.|+.+.|..+|+++.. ....|...+..-...|+.+.+.++++++..
T Consensus 344 e~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 344 SSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK---TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9998753 33344556677777888999999999999853 367788888887888999999999988774
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.02 E-value=5.9e-09 Score=91.17 Aligned_cols=183 Identities=11% Similarity=0.005 Sum_probs=138.2
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 010057 309 IDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDL-NLERTAYLALIGILIKLNTFPKVAEIVEEMT 387 (519)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 387 (519)
+...|+++...+ .++...+..+..++...|++++|++++......+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665544 44555566888899999999999999999876653 2355678889999999999999999999998
Q ss_pred hcCCCc-----cchhHHHHHHHH----hcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010057 388 KAGHSL-----GVYLGALLIHRL----GSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKG 458 (519)
Q Consensus 388 ~~~~~~-----~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 458 (519)
+.. | +..+...|..++ ...++..+|..+|+++.+..|+..+-..++.++.+.|++++|.+.++.+.+.-
T Consensus 164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 763 5 345555555552 23448999999999998877753344455558999999999999999776531
Q ss_pred ---------CCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 459 ---------IHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 459 ---------~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
-+-|+.++..++......|+ +|.++++++++..|++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 13457777666666666786 8999999999998863
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=5e-08 Score=75.37 Aligned_cols=128 Identities=17% Similarity=0.225 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010057 104 YTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183 (519)
Q Consensus 104 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 183 (519)
|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3344444444444444444444444332 1133344444444444555555555555444432 2234444444555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 184 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
.|++++|.++++.+.+.. +.+..++..+...+.+.|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555544432 12334444555555555555555555554443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.7e-08 Score=75.52 Aligned_cols=130 Identities=14% Similarity=0.209 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 147 (519)
.|..+...+...|++++|..+++.+.+.+.. +...+..+...+...|++++|...|+++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4677788888889999999999988876433 67788888888889999999999999887764 235677888888899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010057 148 LNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 200 (519)
..|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999888753 336778888888999999999999999888764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=8.3e-09 Score=92.11 Aligned_cols=178 Identities=12% Similarity=-0.001 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhC----CCCcC-HHHHHHHHHHHHhcCCcchHH
Q 010057 306 LVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM----DLNLE-RTAYLALIGILIKLNTFPKVA 380 (519)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~ 380 (519)
++.|...+... ...|...|++++|++.|.+..+. +-+++ ..+|..+..+|.+.|++++|.
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 66666666554 44677789999999999887654 32222 456899999999999999999
Q ss_pred HHHHHHHhcCC---Cc--cchhHHHHHHHHhcC-CCcchHHHHhhhCCcCCC---C----chhHHHHHHHHHhcCCHHHH
Q 010057 381 EIVEEMTKAGH---SL--GVYLGALLIHRLGSA-RRPVPAAKIFSLLPEDQK---C----TATYTALIGVYFSAGSADKA 447 (519)
Q Consensus 381 ~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~---~----~~~~~~li~~~~~~g~~~~A 447 (519)
..++..++... .+ ....+..+...|... |++++|...|++..+..| + ..+|+.+...|.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99998875321 11 134677888889996 999999999987755322 1 34688899999999999999
Q ss_pred HHHHHHHHHCCCCCCcc------cHHHHHHHHHhcCChhHHHHHHHHhcccCccccc
Q 010057 448 LKIYKTMCRKGIHPSLG------TFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALS 498 (519)
Q Consensus 448 ~~~~~~m~~~g~~p~~~------t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 498 (519)
++.|++..+........ .+..+..++...|++++|...+++..++.|+...
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 99999999874322221 4666777889999999999999999999887554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-08 Score=89.32 Aligned_cols=168 Identities=11% Similarity=-0.040 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcC---HHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC--CccchhHH
Q 010057 325 SAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE---RTAYLALIGILIKLNTFPKVAEIVEEMTKAGH--SLGVYLGA 399 (519)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 399 (519)
...+......+...|++++|+..|+.+.+... -+ ...+..+..++.+.|++++|...|+..++... +.....+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 33444445555666666666666666665431 11 34455666666666666666666666665421 11223344
Q ss_pred HHHHHHhc--------CCCcchHHHHhhhCCcCCCC-chhH-----------------HHHHHHHHhcCCHHHHHHHHHH
Q 010057 400 LLIHRLGS--------ARRPVPAAKIFSLLPEDQKC-TATY-----------------TALIGVYFSAGSADKALKIYKT 453 (519)
Q Consensus 400 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~-~~~~-----------------~~li~~~~~~g~~~~A~~~~~~ 453 (519)
.+..++.. .|++++|...|+++.+..|+ ...+ ..+...|.+.|++++|+..|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 45555555 66666676666665544332 2233 5668889999999999999999
Q ss_pred HHHCCCCCC----cccHHHHHHHHHhc----------CChhHHHHHHHHhcccCcc
Q 010057 454 MCRKGIHPS----LGTFNVLLAGLEKL----------GRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 454 m~~~g~~p~----~~t~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~ 495 (519)
..+. .|+ ...+..+..+|... |++++|...++++.+..|+
T Consensus 174 ~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 174 VFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 9887 344 34566777778766 8889999999999888775
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.93 E-value=4.8e-08 Score=83.37 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=67.7
Q ss_pred CCCcchHHHHhhhCCcCCCCc-hhH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----cc
Q 010057 408 ARRPVPAAKIFSLLPEDQKCT-ATY-----------------TALIGVYFSAGSADKALKIYKTMCRKGIHPSL----GT 465 (519)
Q Consensus 408 ~g~~~~A~~~~~~~~~~~~~~-~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t 465 (519)
.|+.++|...|+++.+..|+. ..+ ..+...|.+.|++++|+..|+++++. .|+. ..
T Consensus 109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 186 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDA 186 (225)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHH
Confidence 456666666666665544432 222 34567788999999999999999987 4543 46
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCcccccc
Q 010057 466 FNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSK 499 (519)
Q Consensus 466 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 499 (519)
+..+..++.+.|++++|.+.++.+....|+....
T Consensus 187 ~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 187 LPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 7888899999999999999999998887776554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.91 E-value=9.5e-08 Score=83.56 Aligned_cols=180 Identities=8% Similarity=-0.045 Sum_probs=116.7
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010057 49 AWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGI-NIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127 (519)
Q Consensus 49 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 127 (519)
|+..|+..... + .++..++..+..++...|++++|.+++......+. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~-~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKD-K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTT-S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44455544321 1 45566666777778888888888888887766543 125667777788888888888888888888
Q ss_pred HHCCCCC-----ChhhHHHHHHHHH--h--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 128 KLKECYP-----TIVSYTAYMKILF--L--NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 128 ~~~~~~p-----~~~~~~~li~~~~--~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
.+. .| +..+...|..++. . .++..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 765 45 2455555555532 2 33788888888887664 4554444455557788888888888887665
Q ss_pred Hc-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 199 EA-----G----VQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 199 ~~-----g----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
+. . -+-|..++..+|......|+ .|.++++++.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 42 0 02244566566666666676 6777787777754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.89 E-value=9.4e-09 Score=86.57 Aligned_cols=127 Identities=11% Similarity=-0.079 Sum_probs=79.5
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCC-
Q 010057 366 LIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGS- 443 (519)
Q Consensus 366 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~- 443 (519)
+..++.+.|++++|...|+..++.. +.+...+..+...+...|++++|...|+++.+..| +..+|..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 6667777777777777777777654 34566667777777777777777777777665433 46677777777655443
Q ss_pred -HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 444 -ADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 444 -~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.+.+...++.... ..|....+.....++...|++++|...+++..++.|+
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3334444444431 1222223333444556677788888888888777775
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-08 Score=99.47 Aligned_cols=153 Identities=10% Similarity=-0.004 Sum_probs=104.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHH
Q 010057 303 KKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEI 382 (519)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 382 (519)
.|+.++|...+++..+... -+...+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4677778888877654432 245677778888888888888888888888764 33566788888888888888888888
Q ss_pred HHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 010057 383 VEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSA---GSADKALKIYKTMCRKG 458 (519)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g 458 (519)
++...+.. +.+...+..+..+|.+.|++++|.+.+++..+..| +...+..+..++... |++++|.+.+++..+.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 88888764 34566777888888888888888888887766433 466778888888888 88888888888888773
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.4e-07 Score=78.82 Aligned_cols=172 Identities=12% Similarity=-0.002 Sum_probs=114.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC-CC-Chhh
Q 010057 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINID---AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKEC-YP-TIVS 138 (519)
Q Consensus 64 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~ 138 (519)
.+...+-.+...+.+.|++++|...|+.+.+.... + ...+..+..++.+.|++++|...|++..+... .| ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34555666666667777777777777777665322 2 45666677777777777777777777766421 11 1334
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC-HHHH-----------------HHHHHHHHHcCCHHHHHH
Q 010057 139 YTAYMKILFL--------NDRVKEATDVYKEMIQRGLPPN-CYTY-----------------TVLMEYLVRAGKYEEALE 192 (519)
Q Consensus 139 ~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~p~-~~~~-----------------~~li~~~~~~~~~~~a~~ 192 (519)
+..+..++.. .|++++|...|++..+.. |+ .... ..+...|.+.|++++|+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 5556666666 777777777777776642 22 2222 456778889999999999
Q ss_pred HHHHHHHcCCC-C-CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCc
Q 010057 193 IFSKMQEAGVQ-P-DKAACNILIEKCCKA----------GETRTIILILRYMKENRLA 238 (519)
Q Consensus 193 ~~~~m~~~g~~-p-~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~ 238 (519)
.|+.+.+.... + ....+..+..+|... |++++|...++.+.+..+.
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 99998875321 1 234677778888866 8889999999998876543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-06 Score=73.84 Aligned_cols=178 Identities=10% Similarity=0.001 Sum_probs=145.2
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhhHHHH
Q 010057 48 KAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAG----DVDGAVNI 123 (519)
Q Consensus 48 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~ 123 (519)
+|++.|+...+ .-++..+..+...|...+++++|.+.|+...+.| +...+..|-..|.. + +.++|...
T Consensus 4 eA~~~~~~aa~----~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAE----AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 46777887753 3578888889999999999999999999998875 66778888888877 6 89999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 010057 124 WEEMKLKECYPTIVSYTAYMKILFL----NDRVKEATDVYKEMIQRGLP-PNCYTYTVLMEYLVR----AGKYEEALEIF 194 (519)
Q Consensus 124 ~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~~~~~~a~~~~ 194 (519)
|++..+.| +..++..|-..|.. .+++++|.+.|++..+.|.. .+...+..|...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998775 67788888888887 88999999999999887521 026788888889988 78999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcCCc
Q 010057 195 SKMQEAGVQPDKAACNILIEKCCKA-G-----ETRTIILILRYMKENRLA 238 (519)
Q Consensus 195 ~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~~~ 238 (519)
+...+. ..+...+..|..+|... | ++++|...|+...+.|..
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 999886 23445677777777654 3 899999999998887754
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-06 Score=77.64 Aligned_cols=227 Identities=10% Similarity=0.057 Sum_probs=177.5
Q ss_pred hhhhhHHhhhccCCh-hHHHHHHHhC-CCCCCHHH-HH---HHHhcCC--ChHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 010057 3 DTISNVYKILKYSTW-DSAQDLLKNL-PIKWDSYT-VN---QVLKTHP--PMEKAWLFFNWVSRSRGFNHDRFTYTTMLD 74 (519)
Q Consensus 3 ~~~~~i~~~~~~~~~-~~a~~~~~~~-~~~p~~~~-~~---~ll~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 74 (519)
++.+.+.+..+.|.. ++|+++++.+ .+.|+.++ |+ .+|...+ ++++++++++.+.... +.+..+|+.--.
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~ 111 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQL 111 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHH
Confidence 455666666677766 4799999987 66677655 33 3455567 9999999999998654 556677777666
Q ss_pred HH----Hhc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--hHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 75 IF----GEA---KRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD--GAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 75 ~~----~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
.+ ... ++++++..+++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~l 189 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 66 555 7899999999999987655 8889998888888889988 999999999987544 77888877777
Q ss_pred HHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcC--CCCCHHHHHHHHHHH
Q 010057 146 LFLNDR------VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY-EEALEIFSKMQEAG--VQPDKAACNILIEKC 216 (519)
Q Consensus 146 ~~~~~~------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g--~~p~~~~~~~li~~~ 216 (519)
+.+.+. ++++++.++++..... -|...|+-+-..+.+.|.. +.+..+...+.+.+ -..+...+..+..+|
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~ 268 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIY 268 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHH
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 777776 8999999999998753 3888999988888888874 44555666655432 134778899999999
Q ss_pred HhcCChHHHHHHHHHHHH
Q 010057 217 CKAGETRTIILILRYMKE 234 (519)
Q Consensus 217 ~~~g~~~~a~~~~~~~~~ 234 (519)
.+.|+.++|.++++.+.+
T Consensus 269 ~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHh
Confidence 999999999999999876
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.81 E-value=7.7e-07 Score=75.82 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 176 VLMEYLVRAGKYEEALEIFSKMQEAGVQPD----KAACNILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 176 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
.+...|.+.|++++|...|+.+.+.. |+ ...+..+..+|.+.|++++|.+.++.+...++.
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 45667889999999999999998752 33 246788899999999999999999988887654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-07 Score=93.88 Aligned_cols=175 Identities=9% Similarity=-0.085 Sum_probs=141.6
Q ss_pred hcCCChHHHHHHHHHHhh-----c-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010057 41 KTHPPMEKAWLFFNWVSR-----S-RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNA 114 (519)
Q Consensus 41 ~~~~~~~~A~~~~~~~~~-----~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 114 (519)
...|++++|++.|+.+.+ . ...+.+...+..+...+.+.|++++|.+.|+...+.... +...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 445999999999998861 0 112456778999999999999999999999999986443 778999999999999
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010057 115 GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIF 194 (519)
Q Consensus 115 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 194 (519)
|++++|...|++..+.... +...|..+..++.+.|++++ .+.|++..+.+ +-+...|..+..++.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999877322 57788999999999999999 99999998863 336778999999999999999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 010057 195 SKMQEAGVQPD-KAACNILIEKCCKAGE 221 (519)
Q Consensus 195 ~~m~~~g~~p~-~~~~~~li~~~~~~g~ 221 (519)
++..+. .|+ ...+..+..++...++
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence 988764 565 4577777777766554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=5.7e-07 Score=79.83 Aligned_cols=168 Identities=11% Similarity=0.017 Sum_probs=136.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHH-
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTA- 141 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~- 141 (519)
+.+...+..+...+.+.|++++|...|+...+.... +...+..+...+.+.|++++|...+++.... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 455677888888899999999999999999887543 6788999999999999999999999988765 455443332
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcC
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQ-PDKAACNILIEKCCKAG 220 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g 220 (519)
....+...++.++|...|++..... +.+...+..+...+...|++++|...|.++.+.... .+...+..+...+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2334667788888999999988863 346789999999999999999999999999885322 12568999999999999
Q ss_pred ChHHHHHHHHHHHH
Q 010057 221 ETRTIILILRYMKE 234 (519)
Q Consensus 221 ~~~~a~~~~~~~~~ 234 (519)
+.+.|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999988886543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.7e-07 Score=76.06 Aligned_cols=126 Identities=12% Similarity=0.009 Sum_probs=70.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 010057 107 VMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK 186 (519)
Q Consensus 107 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 186 (519)
+..++.+.|++++|+..|++..+... -+...+..+..++...|++++|...|++..+.. +-+..++..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 66666677777777777777665532 145666667777777777777777777766642 2245566666666554433
Q ss_pred --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 187 --YEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 187 --~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
.+.+...+..... ..|....+.....++...|++++|...|++..+..
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 2334444444321 12222233334445555667777777777665543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.76 E-value=5e-08 Score=87.74 Aligned_cols=167 Identities=8% Similarity=-0.043 Sum_probs=97.6
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhc----CCCc-cchh
Q 010057 328 ISTIIEVNCDHRRRDGALLAFEYSVKM----DLNL-ERTAYLALIGILIKLNTFPKVAEIVEEMTKA----GHSL-GVYL 397 (519)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 397 (519)
|......|...|++++|...|.+..+. +-.+ -..+|..+...|.+.|++++|...++...+. |-.. ....
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444445566667777777777666543 1111 1234666777777777777777777766542 1111 1345
Q ss_pred HHHHHHHHhcCCCcchHHHHhhhCCcCCC---C----chhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-ccc
Q 010057 398 GALLIHRLGSARRPVPAAKIFSLLPEDQK---C----TATYTALIGVYFSAGSADKALKIYKTMCRK----GIHPS-LGT 465 (519)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t 465 (519)
+..+...|.. |++++|.+.|++..+..+ + ..+++.+...|.+.|++++|++.|++..+. +..+. ..+
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 5566666666 777777777765543211 1 345666777777777777777777776653 11111 124
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 466 FNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 466 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
+..+..++...|++++|...+++.. +.|..
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 4444555566677777777777777 66653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=9.5e-08 Score=84.88 Aligned_cols=163 Identities=14% Similarity=0.062 Sum_probs=130.5
Q ss_pred ccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHH-H
Q 010057 323 LDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGAL-L 401 (519)
Q Consensus 323 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l 401 (519)
.+...+..+...+...|++++|+..|+.+.+.. +-+...+..+...+.+.|++++|...++.+.... |+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 345566677778889999999999999998765 3456778889999999999999999999987754 44333222 2
Q ss_pred HHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---cccHHHHHHHHHhcC
Q 010057 402 IHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS---LGTFNVLLAGLEKLG 477 (519)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~l~~~~~~~g 477 (519)
...+...++.++|.+.+++.... +.+...+..+..+|...|++++|+..|.++.+.. |+ ...+..+...+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHcC
Confidence 33366778888899988877665 4457889999999999999999999999999873 43 567889999999999
Q ss_pred ChhHHHHHHHHhc
Q 010057 478 RVSDAEIYRKEKK 490 (519)
Q Consensus 478 ~~~~a~~~~~~~~ 490 (519)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999999887653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.75 E-value=8.8e-08 Score=96.09 Aligned_cols=184 Identities=8% Similarity=-0.118 Sum_probs=145.7
Q ss_pred HHhcCCHHHHHHHHHHHH--------hcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010057 300 LLKKKNLVAIDSLLSGIM--------DKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILI 371 (519)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (519)
....++.++|...++... ... ..+...+..+..++...|++++|+..|+++.+.. +-+...|..+..++.
T Consensus 401 a~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 401 ATVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp HTTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 378899999999999887 222 2355678888889999999999999999998765 346677889999999
Q ss_pred hcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHH
Q 010057 372 KLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKI 450 (519)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 450 (519)
..|++++|.+.|+...+.. +.+...+..+..+|.+.|++++ .+.|+++.+.. .+...|..+..+|.+.|++++|++.
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999875 4567788899999999999999 99999887654 4577899999999999999999999
Q ss_pred HHHHHHCCCCCC-cccHHHHHHHHHhcCC--------hhHHHHHHHHh
Q 010057 451 YKTMCRKGIHPS-LGTFNVLLAGLEKLGR--------VSDAEIYRKEK 489 (519)
Q Consensus 451 ~~~m~~~g~~p~-~~t~~~l~~~~~~~g~--------~~~a~~~~~~~ 489 (519)
|++..+. .|+ ...+..+..++...+. +++|.+.++.+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9998876 455 5566667777655444 44455555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-07 Score=75.90 Aligned_cols=161 Identities=12% Similarity=0.099 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH-HH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI-LF 147 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~ 147 (519)
+......+.+.|++++|...|+...+.... +...+..+...+...|++++|...|++.... .|+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 344455566677777777777766654222 4566677777777777777777777766544 2333222221111 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 010057 148 LNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP-DKAACNILIEKCCKAGETRTII 226 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~ 226 (519)
..+...+|...|++..+.. +-+...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222334566777766642 2246677777777777777777777777777653222 2456777777777777777777
Q ss_pred HHHHHHH
Q 010057 227 LILRYMK 233 (519)
Q Consensus 227 ~~~~~~~ 233 (519)
..|+...
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.74 E-value=8e-07 Score=74.86 Aligned_cols=171 Identities=13% Similarity=0.027 Sum_probs=134.4
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC----CcchHHHHHHH
Q 010057 310 DSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLN----TFPKVAEIVEE 385 (519)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~ 385 (519)
...|....+.+ +...+..+-..|...+++++|+..|++..+.| +...+..+...|.. + ++++|.+.|+.
T Consensus 6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 34444444443 56667777777888899999999999998876 45667777777777 6 89999999999
Q ss_pred HHhcCCCccchhHHHHHHHHhc----CCCcchHHHHhhhCCcCCCC---chhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 010057 386 MTKAGHSLGVYLGALLIHRLGS----ARRPVPAAKIFSLLPEDQKC---TATYTALIGVYFS----AGSADKALKIYKTM 454 (519)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~----~g~~~~A~~~~~~m 454 (519)
..+.| ++..+..|...|.. .+++++|.+.|++..+..+. +..+..|...|.. .+++++|++.|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 98865 45566777777776 88999999999998887663 7888999999998 88999999999999
Q ss_pred HHCCCCCCcccHHHHHHHHHhc-C-----ChhHHHHHHHHhccc
Q 010057 455 CRKGIHPSLGTFNVLLAGLEKL-G-----RVSDAEIYRKEKKSI 492 (519)
Q Consensus 455 ~~~g~~p~~~t~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~ 492 (519)
.+. ..+...+..+...|... | ++++|..++++..+.
T Consensus 156 ~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 156 SSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 887 33555777777777543 3 899999999988665
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.73 E-value=2.3e-05 Score=75.01 Aligned_cols=363 Identities=9% Similarity=0.015 Sum_probs=216.6
Q ss_pred hhhhHHhhhccCChhHHHHHHHhC-CCCCCHHHHHHHHhcC---C-ChHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHH
Q 010057 4 TISNVYKILKYSTWDSAQDLLKNL-PIKWDSYTVNQVLKTH---P-PMEKAWLFFNWVSRSRGFN-HDRFTYTTMLDIFG 77 (519)
Q Consensus 4 ~~~~i~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~ll~~~---~-~~~~A~~~~~~~~~~~~~~-~~~~~~~~li~~~~ 77 (519)
+..+.......|+++.+.++|++. ...|+...|..-+.-. + ..+....+|+.....-|.. ++...|...+..+.
T Consensus 17 vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~ 96 (493)
T 2uy1_A 17 IMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEG 96 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Confidence 344455555668999999999987 6668998888776532 3 3456777888887666644 47788998888764
Q ss_pred ----hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCChhhHHHHHHHHHHCCCCCChhhHH
Q 010057 78 ----EAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN-------------AGDVDGAVNIWEEMKLKECYPTIVSYT 140 (519)
Q Consensus 78 ----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------------~g~~~~a~~~~~~m~~~~~~p~~~~~~ 140 (519)
..++.+.+..+|+...+....--...|......-.. .+.+..|..+++++...-...+...|.
T Consensus 97 ~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~ 176 (493)
T 2uy1_A 97 KIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAA 176 (493)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHH
T ss_pred hchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 346788899999999885322112233322221111 122334455555443220001334566
Q ss_pred HHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010057 141 AYMKILFLND--R-----VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILI 213 (519)
Q Consensus 141 ~li~~~~~~~--~-----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 213 (519)
..+..-...+ - .+.+..+|++++.. ++.+...|...+..+.+.|+.++|..+|++.... +.+...+.
T Consensus 177 ~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~--- 250 (493)
T 2uy1_A 177 RLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL--- 250 (493)
T ss_dssp HHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH---
T ss_pred HHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH---
Confidence 5555433221 1 34577899998875 3556888988899999999999999999999987 33332222
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcch
Q 010057 214 EKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSID 293 (519)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (519)
.|+...+.+.. ++.+.+.-... ..+.. ... .......++
T Consensus 251 -~y~~~~e~~~~---~~~l~~~~~~~----------------~~~~~-----------~~~----------~~~~~~~lw 289 (493)
T 2uy1_A 251 -YYGLVMDEEAV---YGDLKRKYSMG----------------EAESA-----------EKV----------FSKELDLLR 289 (493)
T ss_dssp -HHHHHTTCTHH---HHHHHHHTC-----------------------------------------------CHHHHHHHH
T ss_pred -HHHhhcchhHH---HHHHHHHHHhh----------------ccchh-----------hhh----------cccccHHHH
Confidence 23333222222 33322211000 00000 000 000001133
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHH--HHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010057 294 QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVIS--TIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILI 371 (519)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (519)
-..+....+.++.+.|..+|...... ..+...|. +.+...+ .++.+.|..+|+...+.- +-++..+...++...
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A~~~--~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIELGNE--GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 34445555677899999999988222 23444443 3333222 236999999999988753 223444566677778
Q ss_pred hcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCC
Q 010057 372 KLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLP 422 (519)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 422 (519)
+.|+.+.|..+|+.+. .....+...+..-...|+.+.+.+++++..
T Consensus 366 ~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 366 RIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8899999999999972 246677777777777899888888877553
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-08 Score=80.13 Aligned_cols=125 Identities=7% Similarity=-0.001 Sum_probs=63.1
Q ss_pred HHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcch
Q 010057 334 VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVP 413 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (519)
.+...|++++|+..+....... +-+...+..+...|.+.|++++|.+.|+..++.. +.+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~------------------- 64 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERD------------------- 64 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-------------------
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC-------------------
Confidence 3444556666666666554321 1122234455666666666666666666666543 223
Q ss_pred HHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHH-HHHHhccc
Q 010057 414 AAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEI-YRKEKKSI 492 (519)
Q Consensus 414 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~-~~~~~~~~ 492 (519)
+.+|..+..+|.+.|++++|+..|++..+.. +-+...+..+...|.+.|++++|.+ ++++..++
T Consensus 65 --------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 65 --------------PKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555442 1223444455555555555544333 23555544
Q ss_pred Cc
Q 010057 493 QA 494 (519)
Q Consensus 493 ~~ 494 (519)
.|
T Consensus 130 ~P 131 (150)
T 4ga2_A 130 FP 131 (150)
T ss_dssp ST
T ss_pred Cc
Confidence 44
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=5.1e-07 Score=88.93 Aligned_cols=152 Identities=9% Similarity=-0.059 Sum_probs=78.3
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 123 (519)
|++++|.+.|++..+.. +.+...|..+...+.+.|++++|.+.+++..+.... +...+..+..++...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555666665554221 234555666666666666666666666666654322 455566666666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHc
Q 010057 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA---GKYEEALEIFSKMQEA 200 (519)
Q Consensus 124 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~ 200 (519)
|++..+.. +.+...+..+..++.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 66655542 1134556666666666666666666666665542 22455556666666666 6666666666666554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.5e-07 Score=77.18 Aligned_cols=145 Identities=10% Similarity=-0.058 Sum_probs=94.4
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCC
Q 010057 330 TIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSAR 409 (519)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 409 (519)
.+...+...|++++|+..|+... .|+...+..+...+...|++++|...+....+.. +.+...+..+..+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 34445566677777777776552 4556666677777777777777777777766654 334556666666677777
Q ss_pred CcchHHHHhhhCCcCCC-C----------------chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 010057 410 RPVPAAKIFSLLPEDQK-C----------------TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAG 472 (519)
Q Consensus 410 ~~~~A~~~~~~~~~~~~-~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~ 472 (519)
++++|.+.|++..+..| + ...|..+..+|.+.|++++|.+.|++..+. .|+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~--------- 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP--------- 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG---------
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc---------
Confidence 77777777665544322 1 267888899999999999999999998877 4443
Q ss_pred HHhcCChhHHHHHHHHhccc
Q 010057 473 LEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 473 ~~~~g~~~~a~~~~~~~~~~ 492 (519)
..+..++|...+++....
T Consensus 155 --~~~~~~~a~~~~~~~~~~ 172 (213)
T 1hh8_A 155 --RHSKIDKAMECVWKQKLY 172 (213)
T ss_dssp --GGGHHHHHHHHHHTTCCC
T ss_pred --ccchHHHHHHHHHhcccc
Confidence 223455555555544433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-05 Score=71.93 Aligned_cols=207 Identities=9% Similarity=-0.040 Sum_probs=143.8
Q ss_pred HHHhCCCCCCHHHHHHHHhcCCC-hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 010057 23 LLKNLPIKWDSYTVNQVLKTHPP-MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDA 101 (519)
Q Consensus 23 ~~~~~~~~p~~~~~~~ll~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 101 (519)
-++.-...|+..+...+...+|- .+.-......-. +.....+...+..+...|++++|.+.+....+.....+.
T Consensus 36 ~~e~g~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~-----~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~ 110 (293)
T 2qfc_A 36 RIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSD-----IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE 110 (293)
T ss_dssp HHHTSSSCCCHHHHHHHTTTSCCCTHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCcCHHHHhccccccc-----hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh
Confidence 33333456777777777666643 222222211110 223445667788889999999999999888775332111
Q ss_pred -----HHHHHHHHHHHhcCChhhHHHHHHHHHHCCC---CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC
Q 010057 102 -----VTYTSVMHWLSNAGDVDGAVNIWEEMKLKEC---YPT--IVSYTAYMKILFLNDRVKEATDVYKEMIQR-GLPPN 170 (519)
Q Consensus 102 -----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~ 170 (519)
..+..+...+...|++++|...+++...... .+. ..+|+.+...|...|++++|...|++..+. ...|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~ 190 (293)
T 2qfc_A 111 FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD 190 (293)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc
Confidence 2344466677888999999999999875421 111 447889999999999999999999998731 01122
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 010057 171 -----CYTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQPD-KAACNILIEKCCKAGETRTI-ILILRYMKE 234 (519)
Q Consensus 171 -----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 234 (519)
..+++.+...|...|++++|...+++..+. +.... ..+|..+..+|.+.|++++| ...++....
T Consensus 191 ~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 191 NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 258889999999999999999999987643 11111 56888999999999999999 777776554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.8e-07 Score=73.74 Aligned_cols=156 Identities=10% Similarity=0.003 Sum_probs=105.5
Q ss_pred HHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh
Q 010057 39 VLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHW-LSNAGDV 117 (519)
Q Consensus 39 ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~ 117 (519)
.+...|++++|...|+...+.. +.+...+..+...+...|++++|...++...+.. |+...+..+... +...++.
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAE 90 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhccc
Confidence 3344578888888888765432 4466778888888888888888888888776653 244333322211 1222333
Q ss_pred hhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010057 118 DGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPP-NCYTYTVLMEYLVRAGKYEEALEIFSK 196 (519)
Q Consensus 118 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~ 196 (519)
..|...|++..+... -+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++
T Consensus 91 ~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 91 SPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp CHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred chHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 456777777776522 256778888888888888888888888888753322 355778888888888888888888876
Q ss_pred HHH
Q 010057 197 MQE 199 (519)
Q Consensus 197 m~~ 199 (519)
...
T Consensus 170 al~ 172 (176)
T 2r5s_A 170 QLY 172 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=7.5e-07 Score=79.44 Aligned_cols=163 Identities=8% Similarity=0.027 Sum_probs=97.3
Q ss_pred HHHHhccCChhhHHHHHHHHHhCC-CCcCHH----HHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-cc----chhHHHH
Q 010057 332 IEVNCDHRRRDGALLAFEYSVKMD-LNLERT----AYLALIGILIKLNTFPKVAEIVEEMTKAGHS-LG----VYLGALL 401 (519)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 401 (519)
+..+...|++++|...++...+.. ..|+.. .+..+...+...+++++|...+....+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 334455555555555555555432 112211 1223444444445566666666665552211 11 1145555
Q ss_pred HHHHhcCCCcchHHHHhhhCCc-------CCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-cccHHH
Q 010057 402 IHRLGSARRPVPAAKIFSLLPE-------DQK-CTATYTALIGVYFSAGSADKALKIYKTMCRK----GIHPS-LGTFNV 468 (519)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~~~-------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ 468 (519)
...|...|++++|...|+++.+ ..+ ...+|..+...|.+.|++++|++.+++..+. +..+. ..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 5566666666666665554431 111 1347888999999999999999999988754 22222 567888
Q ss_pred HHHHHHhcCC-hhHHHHHHHHhcccCc
Q 010057 469 LLAGLEKLGR-VSDAEIYRKEKKSIQA 494 (519)
Q Consensus 469 l~~~~~~~g~-~~~a~~~~~~~~~~~~ 494 (519)
+..+|.+.|+ +++|.+.++++.++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 8889999995 6999999998876643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-07 Score=74.25 Aligned_cols=83 Identities=11% Similarity=0.017 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010057 105 TSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184 (519)
Q Consensus 105 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 184 (519)
..+...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|...|++..+.. +-+..+|..+...|.+.
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33444444555555555555544443211 34444445555555555555555555544431 11334444444455555
Q ss_pred CCHHH
Q 010057 185 GKYEE 189 (519)
Q Consensus 185 ~~~~~ 189 (519)
|++++
T Consensus 113 ~~~~~ 117 (150)
T 4ga2_A 113 DVTDG 117 (150)
T ss_dssp CSSSS
T ss_pred CChHH
Confidence 54443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=3e-06 Score=71.41 Aligned_cols=141 Identities=12% Similarity=0.031 Sum_probs=74.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010057 105 TSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184 (519)
Q Consensus 105 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 184 (519)
..+...+...|++++|...|++. +.|+...|..+...+...|++++|.+.|++..+.. +.+...+..+..+|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 33444455555555555555544 23355555555555555666666666655555432 22445555555566666
Q ss_pred CCHHHHHHHHHHHHHcC--------------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 010057 185 GKYEEALEIFSKMQEAG--------------VQP-DKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQ 249 (519)
Q Consensus 185 ~~~~~a~~~~~~m~~~g--------------~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 249 (519)
|++++|.+.|+...+.. ..| ....+..+..+|.+.|++++|...++...+.........+..++.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 164 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 164 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHH
Confidence 66666666665555431 111 114555666666666666666666666665554433333333333
Q ss_pred H
Q 010057 250 T 250 (519)
Q Consensus 250 ~ 250 (519)
.
T Consensus 165 ~ 165 (213)
T 1hh8_A 165 C 165 (213)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2.4e-07 Score=72.87 Aligned_cols=100 Identities=12% Similarity=-0.060 Sum_probs=74.4
Q ss_pred chhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 010057 395 VYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGL 473 (519)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~ 473 (519)
...+..+...+.+.|++++|...|+++.... .++..|..+..+|...|++++|++.|++..+.. +.++..|..+..+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 3455556666777777777777777766543 356778888888888888888888888888773 33567777788888
Q ss_pred HhcCChhHHHHHHHHhcccCcc
Q 010057 474 EKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 474 ~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
...|++++|...|++..++.|+
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHcCCHHHHHHHHHHHHHhCCC
Confidence 8888888888888888877665
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.5e-05 Score=65.98 Aligned_cols=137 Identities=12% Similarity=0.064 Sum_probs=77.6
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHCCCCCChhhHHHHHHHH----Hhc---CC
Q 010057 81 RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAG--DVDGAVNIWEEMKLKECYPTIVSYTAYMKIL----FLN---DR 151 (519)
Q Consensus 81 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~---~~ 151 (519)
..++|.++++.+...+.. +...|+.--..+...| +++++++.++.+.....+ +..+|+.--..+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 345677777776665433 4455666556666666 677777777776665322 344454333333 333 56
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010057 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYE--EALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 152 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 221 (519)
+++++++++.+.+.. +-+..+|+.-.-.+.+.+.++ ++++.++.+.+.... |...|+--.......+.
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGG
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 677777777776653 235666666555556666666 666777766665332 55555544444444443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-06 Score=75.75 Aligned_cols=198 Identities=14% Similarity=0.070 Sum_probs=139.9
Q ss_pred cCChhHHHHHHHhC-CCCCCHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010057 14 YSTWDSAQDLLKNL-PIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELM 92 (519)
Q Consensus 14 ~~~~~~a~~~~~~~-~~~p~~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 92 (519)
.|++++|.+++++. ...+.. ++...++++.|...|... ...|...|++++|...|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~-----~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS-----FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-----SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc-----ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHH
Confidence 46677777777765 111110 111136777777777654 45677889999999988877
Q ss_pred HhC----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 93 QEK----GINI-DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK----ECYP-TIVSYTAYMKILFLNDRVKEATDVYKEM 162 (519)
Q Consensus 93 ~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m 162 (519)
.+. +-.+ -..+|+.+...|...|++++|+..|++..+. |-.+ -..+++.+...|.. |++++|+..|++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 653 1111 1347888889999999999999999987543 2111 13577888888888 9999999999987
Q ss_pred HHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 163 IQR----GLPP-NCYTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQPDK-AACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 163 ~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
.+. |-.+ ...+++.+...|.+.|++++|+..|++.... +..+.. .++..+..++...|+++.|...|++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 753 1110 1457888899999999999999999988753 222222 26667777888889999999999988
Q ss_pred H
Q 010057 233 K 233 (519)
Q Consensus 233 ~ 233 (519)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-07 Score=70.91 Aligned_cols=95 Identities=11% Similarity=-0.018 Sum_probs=59.5
Q ss_pred HHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh
Q 010057 401 LIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRV 479 (519)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~ 479 (519)
....|.+.|++++|.+.|++..+. +.+...|..+..+|.+.|++++|++.|++.++.+ +.+...|..+..++...|++
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 97 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREW 97 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCH
Confidence 334444444444444444443332 2345667777777777777777777777777663 33456677777777777777
Q ss_pred hHHHHHHHHhcccCccc
Q 010057 480 SDAEIYRKEKKSIQADA 496 (519)
Q Consensus 480 ~~a~~~~~~~~~~~~~~ 496 (519)
++|.+.|++..+++|+.
T Consensus 98 ~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 98 SKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCcCC
Confidence 77777777777776643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.55 E-value=6.6e-06 Score=73.24 Aligned_cols=166 Identities=12% Similarity=-0.021 Sum_probs=125.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC-CC----hhh
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGI-NIDA----VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECY-PT----IVS 138 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~ 138 (519)
+...+..+...|++++|..+++...+... .|+. ..+..+...+...|++++|+..|++....... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 33446778899999999999999887432 2222 13344666777788999999999999874322 22 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HH
Q 010057 139 YTAYMKILFLNDRVKEATDVYKEMIQ----R-GLPPN-CYTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQPD-KA 207 (519)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~m~~----~-g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~ 207 (519)
++.+...|...|++++|...|++..+ . +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 89999999999999999999999884 1 11222 237888999999999999999999987642 32333 56
Q ss_pred HHHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 010057 208 ACNILIEKCCKAGE-TRTIILILRYMKE 234 (519)
Q Consensus 208 ~~~~li~~~~~~g~-~~~a~~~~~~~~~ 234 (519)
+|..+..+|.+.|+ +++|...+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88999999999995 6999999887654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=69.08 Aligned_cols=101 Identities=6% Similarity=-0.121 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHH
Q 010057 361 TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYF 439 (519)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~ 439 (519)
..+..+...+.+.|++++|...|+...+.. +.++..+..+..+|...|++++|...|++..... .++..|..+..+|.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 447777788888999999999999998875 4567788888899999999999999998887654 45789999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcc
Q 010057 440 SAGSADKALKIYKTMCRKGIHPSLG 464 (519)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (519)
+.|++++|++.|++..+. .||..
T Consensus 116 ~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999999999999987 46653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-06 Score=77.84 Aligned_cols=166 Identities=7% Similarity=-0.012 Sum_probs=117.8
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHhCCCCcC-H----HHHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-cc----chh
Q 010057 328 ISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE-R----TAYLALIGILIKLNTFPKVAEIVEEMTKAGHS-LG----VYL 397 (519)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 397 (519)
+...+..+...|++++|++.+....+...... . ..+..+...+...|++++|...+....+.... .+ ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 44455667788888888888887776532211 1 12334555667778888998888888753211 11 346
Q ss_pred HHHHHHHHhcCCCcchHHHHhhhCCc---CCCC-----chhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-cc
Q 010057 398 GALLIHRLGSARRPVPAAKIFSLLPE---DQKC-----TATYTALIGVYFSAGSADKALKIYKTMCRKG----IHPS-LG 464 (519)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~-~~ 464 (519)
++.+...|...|++++|...|++..+ ..|+ ..+|..+..+|.+.|++++|++.+++..+.. .... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 77788888889999988888876642 1222 2588899999999999999999999887542 1111 55
Q ss_pred cHHHHHHHHHhcCChhHH-HHHHHHhcccC
Q 010057 465 TFNVLLAGLEKLGRVSDA-EIYRKEKKSIQ 493 (519)
Q Consensus 465 t~~~l~~~~~~~g~~~~a-~~~~~~~~~~~ 493 (519)
++..+..+|.+.|++++| ..++++..++.
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 778888899999999999 88888876653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=8.9e-08 Score=75.40 Aligned_cols=93 Identities=6% Similarity=-0.162 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhc
Q 010057 363 YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSA 441 (519)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~ 441 (519)
+..+...+.+.|++++|...|+...+.. +.+...+..+..+|...|++++|...|++..... .++..|..+..+|...
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 4445555555555555555555555443 2233344444444444444444444444443321 2234444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 010057 442 GSADKALKIYKTMCR 456 (519)
Q Consensus 442 g~~~~A~~~~~~m~~ 456 (519)
|++++|++.|++..+
T Consensus 103 g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 103 GELAEAESGLFLAQE 117 (148)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.5e-07 Score=73.45 Aligned_cols=132 Identities=9% Similarity=0.043 Sum_probs=91.5
Q ss_pred HhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHH-HhcCCCc--
Q 010057 335 NCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHR-LGSARRP-- 411 (519)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 411 (519)
+...|++++|+..++...+.. +.+...+..+...+...|++++|...+....+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345678888888888877654 3456778888888888888888888888887754 3355566666666 6677777
Q ss_pred chHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 010057 412 VPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLL 470 (519)
Q Consensus 412 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~ 470 (519)
++|...++.+....| +...|..+...|...|++++|+..|++..+. .|+......++
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 155 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL--NSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCccHHHHH
Confidence 888888877665433 4667778888888888888888888888876 34444433333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.8e-07 Score=74.42 Aligned_cols=124 Identities=10% Similarity=0.012 Sum_probs=102.0
Q ss_pred HhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHH-HHhcCCH--HH
Q 010057 371 IKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGV-YFSAGSA--DK 446 (519)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~-~~~~g~~--~~ 446 (519)
...|++++|...+....+.. +.+...+..+...|...|++++|...|++.... +.+...|..+..+ |...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45688999999999988765 456778889999999999999999999988765 3457788888888 8889998 99
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 447 ALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 447 A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
|++.|++..+.. +.+...+..+...|...|++++|...++++.++.|+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999874 3346778888899999999999999999999988864
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.48 E-value=9.1e-06 Score=65.09 Aligned_cols=128 Identities=13% Similarity=0.023 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLV 182 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 182 (519)
.+..+...+...|++++|...|++..... +.+..++..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444455555555555555555554432 1134455555555555555555555555555432 224455555555566
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHH
Q 010057 183 RAGKYEEALEIFSKMQEAGVQPDKAAC--NILIEKCCKAGETRTIILILRYMK 233 (519)
Q Consensus 183 ~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~~~ 233 (519)
..|++++|...|++..+... .+...+ ......+...|++++|...+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 66666666666665554321 122233 222233455566666666655443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1e-05 Score=60.98 Aligned_cols=96 Identities=18% Similarity=0.287 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010057 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181 (519)
Q Consensus 102 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 181 (519)
..+..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444444555555555555555544332 1133444455555555555555555555554431 22344455555555
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 010057 182 VRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~ 199 (519)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-05 Score=64.04 Aligned_cols=131 Identities=11% Similarity=0.005 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
...+..+...+...|++++|...|+...+.... +..++..+...+...|++++|...|++..+.. +.+...|..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 456788888899999999999999998886433 68889999999999999999999999988763 2367788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPPNCYTYT--VLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
+...|++++|...|++..+.. +.+...+. .+...+...|++++|.+.+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999998863 22455553 344447788999999999887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-05 Score=60.54 Aligned_cols=115 Identities=10% Similarity=0.096 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
...|..+...+...|++++|.+.++.+.+... .+..++..+...+...|++++|...|+++.... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 56788888899999999999999999887643 367888899999999999999999999988763 3367788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 183 (519)
+...|++++|...|+++.+.. +.+...+..+...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 999999999999999988753 2345555555555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.1e-06 Score=70.60 Aligned_cols=157 Identities=8% Similarity=-0.092 Sum_probs=104.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCC
Q 010057 77 GEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK----ECYP-TIVSYTAYMKILFLNDR 151 (519)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~ 151 (519)
...|++++|.++++.+... ......++..+...+...|++++|...+++.... +..| ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567777777755444432 2235567777777888888888888888776552 2122 24567777778888888
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcC
Q 010057 152 VKEATDVYKEMIQR----GLPP--NCYTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQP-DKAACNILIEKCCKAG 220 (519)
Q Consensus 152 ~~~a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g 220 (519)
+++|.+.+++..+. +-.| ....+..+...+...|++++|...+++.... +... -..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888876652 1111 1345677788888889999998888887542 2111 1234577788888999
Q ss_pred ChHHHHHHHHHHHH
Q 010057 221 ETRTIILILRYMKE 234 (519)
Q Consensus 221 ~~~~a~~~~~~~~~ 234 (519)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999988887665
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-06 Score=76.39 Aligned_cols=50 Identities=12% Similarity=0.039 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccH-HHHHHHHHhc-CChhHHHHHHHHhccc
Q 010057 441 AGSADKALKIYKTMCRKGIHPSLGTF-NVLLAGLEKL-GRVSDAEIYRKEKKSI 492 (519)
Q Consensus 441 ~g~~~~A~~~~~~m~~~g~~p~~~t~-~~l~~~~~~~-g~~~~a~~~~~~~~~~ 492 (519)
.|++++|++.+++..+. .|+.... ..+...+.+. +.+++|.++|+++.+.
T Consensus 148 ~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 56777777777776655 4443322 2233333333 5577788888776654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=8e-06 Score=70.48 Aligned_cols=188 Identities=9% Similarity=-0.011 Sum_probs=125.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHh------------CCCC------
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTM-------LDIFGEAKRISSMKYVFELMQE------------KGIN------ 98 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~------------~~~~------ 98 (519)
++...|.+.|..+.+.. +-....|..+ ...+.+.++..++...+..-.+ .|.-
T Consensus 20 ~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred CCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 67788888888776543 4455667666 4555555555555554444333 1210
Q ss_pred --CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HH
Q 010057 99 --IDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN----CY 172 (519)
Q Consensus 99 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~ 172 (519)
--...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... |+ ..
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~ 172 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGA 172 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHH
Confidence 012344556677788889999999888877653 44335555666788889999999888755442 22 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 173 TYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPD--KAACNILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 173 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....+.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 677788888889999999999988875433243 335566677788889999999999988886543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.7e-05 Score=60.32 Aligned_cols=117 Identities=14% Similarity=0.016 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010057 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181 (519)
Q Consensus 102 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 181 (519)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 345555555555666666666666555432 1244555555556666666666666666655542 22355555666666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010057 182 VRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 221 (519)
...|++++|...|+...+.. +.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 66666666666666655532 1244455555555555544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-05 Score=60.46 Aligned_cols=94 Identities=11% Similarity=0.094 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 148 (519)
+......|.+.|++++|.+.|+...+.... +...|..+..++.+.|++++|+..|++..+... .+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH
Confidence 444444445555555555555554443221 344444444455555555555555544444321 133444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 010057 149 NDRVKEATDVYKEMIQ 164 (519)
Q Consensus 149 ~~~~~~a~~~~~~m~~ 164 (519)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4455555444444444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00038 Score=62.20 Aligned_cols=86 Identities=6% Similarity=0.061 Sum_probs=44.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-ChHHH
Q 010057 149 NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG-KYEEALEIFSKMQEAGVQPDKAACNILIEKCCKA-G-ETRTI 225 (519)
Q Consensus 149 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~a 225 (519)
.+..++|++++++++..+. -+..+|+.--..+...+ .+++++++++.+..... -+..+|+.-...+.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHH
Confidence 3444556666666665421 13344555444444555 36666666666665422 2444555544444444 4 55666
Q ss_pred HHHHHHHHHcC
Q 010057 226 ILILRYMKENR 236 (519)
Q Consensus 226 ~~~~~~~~~~~ 236 (519)
+++++.+.+..
T Consensus 145 L~~~~k~L~~d 155 (349)
T 3q7a_A 145 IEYIHGSLLPD 155 (349)
T ss_dssp HHHHHHHTSSC
T ss_pred HHHHHHHHHhC
Confidence 66666555433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-05 Score=60.69 Aligned_cols=97 Identities=18% Similarity=0.111 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010057 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180 (519)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 180 (519)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3445555555555555555555555554432 1134455555555555555555555555555432 2234455555555
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 010057 181 LVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 181 ~~~~~~~~~a~~~~~~m~~ 199 (519)
+...|++++|.+.|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.6e-06 Score=72.64 Aligned_cols=189 Identities=10% Similarity=-0.068 Sum_probs=136.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHH-------HHHHhccCChhhHHHHHHHHHhCCCCcCH--------------
Q 010057 302 KKKNLVAIDSLLSGIMDKSIQLDSAVISTI-------IEVNCDHRRRDGALLAFEYSVKMDLNLER-------------- 360 (519)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------- 360 (519)
..++...|...|.+....... ....|..+ ...+...++..+++..+..... +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 578999999999998876543 33445544 3344444445555555554433 22221
Q ss_pred --------HHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC---ch
Q 010057 361 --------TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC---TA 429 (519)
Q Consensus 361 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 429 (519)
.........+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+.....+++ ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 223456677889999999999999988755 44335566666789999999999999977654321 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPS--LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|...|+++.+..|+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 678889999999999999999999985533254 335666777889999999999999999988876
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.5e-06 Score=69.03 Aligned_cols=154 Identities=11% Similarity=0.034 Sum_probs=112.4
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCChh
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQE----KGINI-DAVTYTSVMHWLSNAGDVD 118 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~ 118 (519)
|++++|.++++.+... .......+..+...+...|++++|...+++..+ .+..| ...++..+...+...|+++
T Consensus 6 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 6 HDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp -CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 7888888866655321 123567788888999999999999999988766 22121 3457788888999999999
Q ss_pred hHHHHHHHHHHC----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHHcCCH
Q 010057 119 GAVNIWEEMKLK----ECYP--TIVSYTAYMKILFLNDRVKEATDVYKEMIQRG-LPPN----CYTYTVLMEYLVRAGKY 187 (519)
Q Consensus 119 ~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~~~~~li~~~~~~~~~ 187 (519)
+|...+++.... +-.| ...++..+...+...|++++|...+++..... -..+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 999999887553 2111 23467788889999999999999999876421 0112 23467788889999999
Q ss_pred HHHHHHHHHHHH
Q 010057 188 EEALEIFSKMQE 199 (519)
Q Consensus 188 ~~a~~~~~~m~~ 199 (519)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=9.7e-07 Score=69.39 Aligned_cols=101 Identities=14% Similarity=-0.048 Sum_probs=80.9
Q ss_pred cchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 010057 394 GVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAG 472 (519)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~ 472 (519)
+...+..+...+...|++++|...|+.+... +.+...|..+..+|...|++++|++.|++..+.. +.++..+..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 4455666777888889999999999877665 3467788888888999999999999999888773 3456777788888
Q ss_pred HHhcCChhHHHHHHHHhcccCcc
Q 010057 473 LEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 473 ~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
|...|++++|...+++..++.|+
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHHCcC
Confidence 89999999999999988887764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-05 Score=61.20 Aligned_cols=120 Identities=13% Similarity=-0.003 Sum_probs=94.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
+.+...|..+...+...|++++|...|+...+.... +...+..+...+...|++++|...|++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 445677888889999999999999999998876432 67888888999999999999999999988763 2357788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 010057 143 MKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG 185 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 185 (519)
..++.+.|++++|.+.|++..+.. +.+...+..+...+...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 899999999999999999988752 123455666666655544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.6e-05 Score=60.47 Aligned_cols=120 Identities=16% Similarity=0.042 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 65 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
+...+..+...+...|++++|...++...+... .+...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 456677888888899999999999999887643 367788888899999999999999999988763 235778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 010057 145 ILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187 (519)
Q Consensus 145 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 187 (519)
.+...|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999988763 23667777777777776654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00041 Score=62.04 Aligned_cols=176 Identities=9% Similarity=-0.005 Sum_probs=114.5
Q ss_pred HhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-C
Q 010057 40 LKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAK-RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNA-G-D 116 (519)
Q Consensus 40 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-~ 116 (519)
+......++|+++++.+.... +-+..+|+.--..+...+ +++++.+.++.+.+...+ +..+|+.--..+... + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 344456677888888776443 445566777777777777 488888888888877655 677777766666665 6 7
Q ss_pred hhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--
Q 010057 117 VDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVK--------EATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK-- 186 (519)
Q Consensus 117 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-- 186 (519)
.++++++++.+.+...+ |..+|+.-...+.+.+.++ ++++.++++.+.... |...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 78888888888766433 5666665555544444444 777777777776433 66777776666666654
Q ss_pred -----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010057 187 -----YEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 187 -----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 221 (519)
++++++.+++..... +-|...|+-+-..+.+.|.
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 567777777766643 2255666655555554444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.1e-06 Score=63.54 Aligned_cols=101 Identities=11% Similarity=-0.011 Sum_probs=75.7
Q ss_pred chhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CcccHHHHHH
Q 010057 395 VYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP--SLGTFNVLLA 471 (519)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~l~~ 471 (519)
...+..+...+...|++++|...|++..+. +.+...|..+..+|...|++++|++.|++..+.. +. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344455566666677777777777665443 2346678888888999999999999999988773 33 4677888888
Q ss_pred HHHhc-CChhHHHHHHHHhcccCccc
Q 010057 472 GLEKL-GRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 472 ~~~~~-g~~~~a~~~~~~~~~~~~~~ 496 (519)
++... |++++|.+.+++..+..|..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 88999 99999999999988776653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.32 E-value=8.6e-07 Score=69.22 Aligned_cols=94 Identities=11% Similarity=-0.126 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhc
Q 010057 363 YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSA 441 (519)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~ 441 (519)
+..+...+.+.|++++|...|+...+.. +.+...+..+..+|...|++++|...|++..... .++..|..+..+|...
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4445555666666666666666665543 2333444444444444455555544444443322 2234444444444444
Q ss_pred CCHHHHHHHHHHHHHC
Q 010057 442 GSADKALKIYKTMCRK 457 (519)
Q Consensus 442 g~~~~A~~~~~~m~~~ 457 (519)
|++++|++.|++..+.
T Consensus 100 g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 100 GDLDGAESGFYSARAL 115 (142)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 4555554444444433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00016 Score=64.25 Aligned_cols=227 Identities=11% Similarity=0.033 Sum_probs=161.5
Q ss_pred hhhhHHhhhccCChh-HHHHHHHhC-CCCCCHHH-HH---HHHhcCCC----------hHHHHHHHHHHhhcCCCCCCHH
Q 010057 4 TISNVYKILKYSTWD-SAQDLLKNL-PIKWDSYT-VN---QVLKTHPP----------MEKAWLFFNWVSRSRGFNHDRF 67 (519)
Q Consensus 4 ~~~~i~~~~~~~~~~-~a~~~~~~~-~~~p~~~~-~~---~ll~~~~~----------~~~A~~~~~~~~~~~~~~~~~~ 67 (519)
+...+....+.|.++ +|+++++.+ ...|+.++ |+ .+|...+. +++++.+++.+.... +.+..
T Consensus 32 ~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~ 109 (331)
T 3dss_A 32 ATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYG 109 (331)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHH
Confidence 445566666777777 689999988 77777665 33 22333232 678899999887554 67888
Q ss_pred HHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 68 TYTTMLDIFGEAK--RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD-VDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 68 ~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
+|+.-...+.+.+ +++++..+++.+.+.... |...|+.-.-.+...|. ++++++.++.+.+..+. |..+|+....
T Consensus 110 aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ 187 (331)
T 3dss_A 110 TWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSC 187 (331)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHH
T ss_pred HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 9998888888888 489999999999987655 88889888888888888 58999999999887544 7778887666
Q ss_pred HHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHH
Q 010057 145 ILFLN--------------DRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA-----------GKYEEALEIFSKMQE 199 (519)
Q Consensus 145 ~~~~~--------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~ 199 (519)
.+.+. +.++++++.+.+..... +-|...|+-+-..+.+. +.++++++.++++.+
T Consensus 188 ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 188 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp HHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 66554 45788999999888763 33777777555555444 457889999999987
Q ss_pred cCCCCCHH-HHHHHHH---HHHhcCChHHHHHHHHHHHHcCC
Q 010057 200 AGVQPDKA-ACNILIE---KCCKAGETRTIILILRYMKENRL 237 (519)
Q Consensus 200 ~g~~p~~~-~~~~li~---~~~~~g~~~~a~~~~~~~~~~~~ 237 (519)
. .||.. .+.+++. +....+..+++...+.++.+-++
T Consensus 267 ~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 267 L--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp H--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred h--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 4 45542 2222221 11234666777777877776543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.27 E-value=7.8e-06 Score=72.16 Aligned_cols=98 Identities=18% Similarity=0.106 Sum_probs=58.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010057 135 TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214 (519)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 214 (519)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...++...+.. +-+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455566666666666666666666666542 2255566666666666666666666666665532 124445666666
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 010057 215 KCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~ 234 (519)
+|...|++++|...|+...+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666655433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.27 E-value=3.6e-06 Score=64.06 Aligned_cols=34 Identities=3% Similarity=-0.005 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGT 465 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 465 (519)
+|..+..+|...|++++|++.|++..+. .||+.+
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 4555566666666666666666666554 445443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.7e-06 Score=65.00 Aligned_cols=102 Identities=13% Similarity=0.053 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHH
Q 010057 359 ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVY 438 (519)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 438 (519)
+...+..+...+...|++++|...|....+.. +.+ ...|..+..+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~---------------------------------~~~~~~l~~~~ 53 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLV---------------------------------AVYYTNRALCY 53 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC---------------------------------HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCc---------------------------------HHHHHHHHHHH
Confidence 34455566666666666666666666665543 122 34455555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 439 FSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++..++.|+
T Consensus 54 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 54 LKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 55555555555555555542 223445555555555555555555555555555444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-06 Score=64.86 Aligned_cols=96 Identities=8% Similarity=-0.096 Sum_probs=68.5
Q ss_pred HHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 010057 400 LLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGR 478 (519)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~ 478 (519)
.+...+.+.|++++|...|++..+.. .+...|..+..++...|++++|+..|++..+.. +-+...+..+..++...|+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 34445556666666666666655543 356778888888888999999999999888773 3346677778888888999
Q ss_pred hhHHHHHHHHhcccCccc
Q 010057 479 VSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 479 ~~~a~~~~~~~~~~~~~~ 496 (519)
+++|...+++..++.|+.
T Consensus 101 ~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 999999999888887753
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.26 E-value=3.6e-05 Score=69.87 Aligned_cols=132 Identities=13% Similarity=-0.002 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010057 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT--------------IVSYTAYMKILFLNDRVKEATDVYKEMIQRG 166 (519)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 166 (519)
...+..+...+.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|...|++.++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45666667777777777777777777766522211 4788888889999999999999999988863
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 010057 167 LPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTI-ILILRYMKE 234 (519)
Q Consensus 167 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 234 (519)
+.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|+.+++ ..+++.|..
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3367788889999999999999999999988753 23566888888888888988888 445665543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.25 E-value=3e-05 Score=70.40 Aligned_cols=150 Identities=9% Similarity=-0.019 Sum_probs=118.5
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHH
Q 010057 45 PMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINID--------------AVTYTSVMHW 110 (519)
Q Consensus 45 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~ 110 (519)
++++|++.|+...... +.+...|..+...|.+.|++++|...|+...+...... ...|..+..+
T Consensus 128 ~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554332111 22456788899999999999999999999988643321 5889999999
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010057 111 LSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEA 190 (519)
Q Consensus 111 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 190 (519)
+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|+.+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998874 2367889999999999999999999999999863 33677888999999999999888
Q ss_pred -HHHHHHHH
Q 010057 191 -LEIFSKMQ 198 (519)
Q Consensus 191 -~~~~~~m~ 198 (519)
..+|..|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 45666664
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=7.9e-06 Score=63.99 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=40.9
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 428 TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
...|..+..+|...|++++|++.+++..+.. +.+...+..+..++...|++++|...+++..++.|
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3455666666666677777777766666552 22345555666666666777777777766665544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=3.1e-06 Score=70.42 Aligned_cols=98 Identities=17% Similarity=-0.008 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010057 137 VSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKC 216 (519)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 216 (519)
..|..+..+|.+.|++++|...+++..+.. +.+...+..+..+|...|++++|...|+...+.. +-+..++..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 456666666677777777777777666642 2355666667777777777777777777766542 12445666666666
Q ss_pred HhcCChHHHH-HHHHHHHHcC
Q 010057 217 CKAGETRTII-LILRYMKENR 236 (519)
Q Consensus 217 ~~~g~~~~a~-~~~~~~~~~~ 236 (519)
...++.+++. ..+..+...+
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 6666655555 4444444433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=4.4e-06 Score=69.46 Aligned_cols=154 Identities=8% Similarity=-0.013 Sum_probs=86.8
Q ss_pred hcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---------------HHHHH
Q 010057 41 KTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINID---------------AVTYT 105 (519)
Q Consensus 41 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---------------~~~~~ 105 (519)
...|+++.+.+.|+.-.... ......+..+...+...|++++|...|+...+....-. ...|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 33456666666554322111 22344566666777777788888877777776422111 25667
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 010057 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG 185 (519)
Q Consensus 106 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 185 (519)
.+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.|++..+.. +-+...+..+..++...+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHH
Confidence 77777777777777777777776652 2256677777777777777877777777776642 224556666666666666
Q ss_pred CHHHHH-HHHHHHH
Q 010057 186 KYEEAL-EIFSKMQ 198 (519)
Q Consensus 186 ~~~~a~-~~~~~m~ 198 (519)
+.+++. ..|..+.
T Consensus 171 ~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 171 EARKKDKLTFGGMF 184 (198)
T ss_dssp HHHC----------
T ss_pred HHHHHHHHHHHHHh
Confidence 555554 4444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=7.8e-05 Score=56.40 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLV 182 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 182 (519)
.|..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|...|++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444444445555555555555544432 1134444455555555555555555555544432 113444445555555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 010057 183 RAGKYEEALEIFSKMQE 199 (519)
Q Consensus 183 ~~~~~~~a~~~~~~m~~ 199 (519)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555554443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=5.5e-05 Score=57.27 Aligned_cols=98 Identities=9% Similarity=-0.019 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
...|..+...+.+.|++++|...|+...+.... +...|..+..++.+.|++++|+..|++..+... .+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 455777778888999999999999988876433 678888899999999999999999999887642 257788888889
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 010057 146 LFLNDRVKEATDVYKEMIQR 165 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~ 165 (519)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999988774
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.17 E-value=9.4e-06 Score=63.20 Aligned_cols=99 Identities=18% Similarity=-0.045 Sum_probs=67.9
Q ss_pred hhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 010057 396 YLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLE 474 (519)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~ 474 (519)
..+..+...+.+.|++++|...|+.+.... .+...|..+..+|.+.|++++|+..|++..+.. +.++..+..+..+|.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 344445566677777777777777665543 356667777777777777777777777777663 334556666777777
Q ss_pred hcCChhHHHHHHHHhcccCcc
Q 010057 475 KLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 475 ~~g~~~~a~~~~~~~~~~~~~ 495 (519)
..|++++|...+++..++.|+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCCC
Confidence 777777777777777776653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.16 E-value=5.6e-05 Score=57.35 Aligned_cols=59 Identities=8% Similarity=0.014 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMK 128 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 128 (519)
+..+...+.+.|++++|...|+...+.... +...|+.+..+|...|++++|++.|++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 444445555555555555555555543222 34445555555555555555555555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00014 Score=53.95 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010057 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181 (519)
Q Consensus 102 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 181 (519)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344444445555555555555555544432 1134444444555555555555555555544431 12344445555555
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 010057 182 VRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~ 199 (519)
...|++++|.+.++...+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00011 Score=54.53 Aligned_cols=99 Identities=13% Similarity=-0.000 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 65 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
+...+..+...+...|++++|...++...+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 345677778888889999999999998887643 267788888888889999999999999887763 225677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 010057 145 ILFLNDRVKEATDVYKEMIQR 165 (519)
Q Consensus 145 ~~~~~~~~~~a~~~~~~m~~~ 165 (519)
++...|++++|.+.+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 899999999999999988875
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.15 E-value=2.9e-06 Score=81.02 Aligned_cols=129 Identities=10% Similarity=0.054 Sum_probs=78.3
Q ss_pred HhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchH
Q 010057 335 NCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPA 414 (519)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 414 (519)
+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|.+.++...+..
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------------------------ 70 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD------------------------ 70 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------------------------
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------------
Confidence 445556666666665555442 2234445555555555555555555555554432
Q ss_pred HHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH--HHhcCChhHHHHHHH-----
Q 010057 415 AKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAG--LEKLGRVSDAEIYRK----- 487 (519)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~--~~~~g~~~~a~~~~~----- 487 (519)
+.+...|..+..+|.+.|++++|++.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 71 ----------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~ 139 (477)
T 1wao_1 71 ----------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 139 (477)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------CCST
T ss_pred ----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 2235678888888999999999999999888763 2234555555555 777899999999998
Q ss_pred ------HhcccCcccccc
Q 010057 488 ------EKKSIQADALSK 499 (519)
Q Consensus 488 ------~~~~~~~~~~~~ 499 (519)
+..++.|+...|
T Consensus 140 ~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 140 VDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp TTCCTTSSCCCCTTCCSC
T ss_pred Hhhhhhhhcccccccccc
Confidence 667777765555
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00019 Score=67.73 Aligned_cols=98 Identities=10% Similarity=-0.001 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhC--CC--CcC-HHHHHHHHHHHHhcCCcchHHHHHHHHHhc----CCCcc
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKM--DL--NLE-RTAYLALIGILIKLNTFPKVAEIVEEMTKA----GHSLG 394 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 394 (519)
...++..+...|...|++++|..++..+... +. .+. ...+..++..|...|++++|..+++..... +.++.
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 213 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ 213 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence 3567788888999999999999999887653 21 221 345888889999999999999999887642 21111
Q ss_pred --chhHHHHHHHHhcCCCcchHHHHhhhC
Q 010057 395 --VYLGALLIHRLGSARRPVPAAKIFSLL 421 (519)
Q Consensus 395 --~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (519)
...+..+...+...+++++|...|...
T Consensus 214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 214 TVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 234556666777888888888877654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0001 Score=58.79 Aligned_cols=98 Identities=11% Similarity=0.026 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010057 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180 (519)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 180 (519)
...+..+...+.+.|++++|+..|++..+... -+...|..+..+|.+.|++++|+..|++..+.. +-+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44555566666666666666666666655421 145566666666666666666666666666542 2245566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 010057 181 LVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 181 ~~~~~~~~~a~~~~~~m~~~ 200 (519)
|...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66666666666666666543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0001 Score=58.82 Aligned_cols=112 Identities=13% Similarity=-0.018 Sum_probs=92.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010057 135 TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214 (519)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 214 (519)
+...|..+...+.+.|++++|.+.|++..+.. +-+...|..+..+|.+.|++++|+..|+...+.. +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45678888899999999999999999999863 3378899999999999999999999999998864 235779999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHH
Q 010057 215 KCCKAGETRTIILILRYMKENRLALRYPVFKEAL 248 (519)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 248 (519)
+|...|++++|...|+...+.........+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999988765544333333333
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.11 E-value=7.9e-06 Score=62.29 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----cccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPS----LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
.+..+..+|.+.|++++|+..|++..+.. |+ ...+..+..++...|++++|...++++.+..|
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 44445555555555555555555555442 22 23344444555555555555555555554443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=4.4e-05 Score=58.03 Aligned_cols=95 Identities=12% Similarity=0.080 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC--CCC----hhhHHHH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKEC--YPT----IVSYTAY 142 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~~l 142 (519)
|..+...+...|++++|...|+...+... .+...+..+...+...|++++|...+++...... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 44444444445555555555554444321 1334444444444444555555544444433210 001 3334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 010057 143 MKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~ 164 (519)
..++...|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444444444444444444444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=3.8e-05 Score=58.35 Aligned_cols=111 Identities=13% Similarity=0.185 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 010057 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGL--PPN----CYTY 174 (519)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~ 174 (519)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++...... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456666677777777777777777776653 22556666777777777777777777777665321 112 5566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010057 175 TVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214 (519)
Q Consensus 175 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 214 (519)
..+...+...|++++|.+.|+...+. .|+......+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 66677777777777777777776664 345444444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.1e-05 Score=54.94 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=62.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 010057 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP--DKAACNILI 213 (519)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li 213 (519)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 4455566666666677777777776666542 2345566666666677777777777777666542 12 355666666
Q ss_pred HHHHhc-CChHHHHHHHHHHHHcC
Q 010057 214 EKCCKA-GETRTIILILRYMKENR 236 (519)
Q Consensus 214 ~~~~~~-g~~~~a~~~~~~~~~~~ 236 (519)
.++.+. |++++|.+.++...+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 677777 77777777776665544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.6e-06 Score=63.85 Aligned_cols=85 Identities=12% Similarity=0.013 Sum_probs=44.8
Q ss_pred CCcchHHHHhhhCCcC----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHH
Q 010057 409 RRPVPAAKIFSLLPED----QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEI 484 (519)
Q Consensus 409 g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~ 484 (519)
|++++|+..|++..+. +.+...|..+..+|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4444455554444333 1124455566666666666666666666666552 2234455555556666666666666
Q ss_pred HHHHhcccCc
Q 010057 485 YRKEKKSIQA 494 (519)
Q Consensus 485 ~~~~~~~~~~ 494 (519)
.+++..+..|
T Consensus 83 ~~~~al~~~p 92 (117)
T 3k9i_A 83 LLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhCC
Confidence 6666555544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0001 Score=56.64 Aligned_cols=98 Identities=11% Similarity=0.048 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010057 100 DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179 (519)
Q Consensus 100 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 179 (519)
+...|..+...+...|++++|...|++..... +.+...|..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 34455555555555555555555555554442 1134455555555555666666666655555532 224455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 010057 180 YLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~ 199 (519)
++...|++++|...|+...+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666655543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00017 Score=68.11 Aligned_cols=167 Identities=7% Similarity=0.013 Sum_probs=119.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCC-hh
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKG-INIDAV----TYTSVMHWLSNAGDVDGAVNIWEEMKLK----ECYPT-IV 137 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~ 137 (519)
.+..+...|...|++++|.+.+..+.+.- ..++.. +.+.+-..+...|+.+.|..+++..... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 46778899999999999999998876521 111221 2333333444568899999998887542 22222 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-C-C--H
Q 010057 138 SYTAYMKILFLNDRVKEATDVYKEMIQR--GL--PP-NCYTYTVLMEYLVRAGKYEEALEIFSKMQEA--GVQ-P-D--K 206 (519)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~--~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~-p-~--~ 206 (519)
++..+...|...|++++|..++++.... +. .+ ...++..++..|...|++++|..+++..... .+. | . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7788999999999999999999987652 11 12 2457888999999999999999999887642 121 2 1 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 207 AACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
..+..+...+...++++.|...|.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3566677778888999999988877654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.001 Score=59.17 Aligned_cols=152 Identities=7% Similarity=-0.091 Sum_probs=91.6
Q ss_pred hhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC-cchHHHHHHHHHhcCCCccchhHHHHHHHHhcC-----------
Q 010057 341 RDGALLAFEYSVKMDLNLERTAYLALIGILIKLNT-FPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSA----------- 408 (519)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 408 (519)
+++++..+..+.+.. +-|...|+.-..++...|. ++++++.+..+++.. +-|...|+.....+.+.
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccc
Confidence 556666666666544 2344555555555555565 356666666666554 33444444444333322
Q ss_pred ---CCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCcccHHHHHHH-
Q 010057 409 ---RRPVPAAKIFSLLPED-QKCTATYTALIGVYFSA-----------GSADKALKIYKTMCRKGIHPSLGTFNVLLAG- 472 (519)
Q Consensus 409 ---g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~- 472 (519)
+.++++.+.+...... +.|..+|+-+-..+.+. +.++++++.++++.+. .||. .|..+..+
T Consensus 204 ~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~ 280 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIIL 280 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHH
Confidence 2355666666655443 44566776655555554 4578999999999987 5665 34432222
Q ss_pred ----HHhcCChhHHHHHHHHhcccCcccc
Q 010057 473 ----LEKLGRVSDAEIYRKEKKSIQADAL 497 (519)
Q Consensus 473 ----~~~~g~~~~a~~~~~~~~~~~~~~~ 497 (519)
....|..+++..+++++++++|...
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~ 309 (331)
T 3dss_A 281 LMRALDPLLYEKETLQYFSTLKAVDPMRA 309 (331)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhhcccccHHHHHHHHHHHHHhCcchh
Confidence 2346778899999999999988644
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00031 Score=54.62 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010057 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT----IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVL 177 (519)
Q Consensus 102 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 177 (519)
..+..+...+...|++++|...|++..+. .|+ ...|..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 33444444444444444444444444333 222 2334444444444444444444444444331 1133444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 010057 178 MEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 178 i~~~~~~~~~~~a~~~~~~m~~ 199 (519)
..++...|++++|...|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444555555554444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.03 E-value=5.8e-06 Score=65.84 Aligned_cols=140 Identities=15% Similarity=0.069 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhCCCC-cC----HHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHH
Q 010057 325 SAVISTIIEVNCDHRRRDGALLAFEYSVKMDLN-LE----RTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGA 399 (519)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (519)
..++..+...+...|++++|+..+++..+.... ++ ...+..+...+...|++++|...+....+..-..+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----- 83 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK----- 83 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-----
Confidence 344556666666667777777777665543111 11 12355555556666666666666655543210000
Q ss_pred HHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CcccHHHHHHHHH
Q 010057 400 LLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRK----GIHP-SLGTFNVLLAGLE 474 (519)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~l~~~~~ 474 (519)
........+..+...|...|++++|.+.+++..+. +..+ ...++..+...+.
T Consensus 84 -----------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 84 -----------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----------------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 00001345677788888888888888888877643 2111 1345667777888
Q ss_pred hcCChhHHHHHHHHhccc
Q 010057 475 KLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 475 ~~g~~~~a~~~~~~~~~~ 492 (519)
..|++++|.+.+++..++
T Consensus 141 ~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 889999999888877654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=6.8e-05 Score=59.46 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECY-PT----IVSYTAYMKILFLNDRVKEATDVYKEMIQRGL-PPN----CY 172 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~ 172 (519)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+..- .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555555666666666666555432100 01 13555566666666777777666666544200 011 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 173 TYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQP-DKAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 173 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
.+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5556666777777777777777666432 1111 123566677777788888888887776554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.96 E-value=9.5e-06 Score=63.04 Aligned_cols=113 Identities=12% Similarity=-0.004 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhc
Q 010057 362 AYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSA 441 (519)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~ 441 (519)
.+......+.+.|++++|...|+..++.. |+...- ++ ....+.+...|..+..++.+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~--------------~a------~~~~~~~a~a~~n~g~al~~L 70 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPE--------------EA------FDHAGFDAFCHAGLAEALAGL 70 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTT--------------SC------CCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcch--------------hh------hhhccchHHHHHHHHHHHHHC
Confidence 35566677778888888888888887643 221000 00 000001234899999999999
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCC-cccH----HHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 442 GSADKALKIYKTMCRK-----GIHPS-LGTF----NVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 442 g~~~~A~~~~~~m~~~-----g~~p~-~~t~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
|++++|+..+++.++. .+.|+ ...| .....++...|++++|...|++..++.|+.
T Consensus 71 gr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 71 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 9999999999998875 22454 5677 788889999999999999999999998863
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.96 E-value=7.4e-05 Score=56.72 Aligned_cols=95 Identities=13% Similarity=0.022 Sum_probs=56.2
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCCCccc---hhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC----chhHHHHHHHHH
Q 010057 367 IGILIKLNTFPKVAEIVEEMTKAGHSLGV---YLGALLIHRLGSARRPVPAAKIFSLLPEDQKC----TATYTALIGVYF 439 (519)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~ 439 (519)
...+...|++++|...+..+.+.. +.+. ..+..+..++...|++++|...|+.+....|+ ...+..+..+|.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 334445555555555555555432 1112 24444555555556666666555554443232 455777888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcc
Q 010057 440 SAGSADKALKIYKTMCRKGIHPSLG 464 (519)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (519)
+.|++++|++.|++..+. .|+..
T Consensus 88 ~~g~~~~A~~~~~~~~~~--~p~~~ 110 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ--YPGSD 110 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTSH
T ss_pred HcCCHHHHHHHHHHHHHH--CCCCh
Confidence 899999999999988877 35543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=9.9e-05 Score=55.37 Aligned_cols=88 Identities=11% Similarity=-0.026 Sum_probs=37.2
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 010057 109 HWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYE 188 (519)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 188 (519)
..+.+.|++++|...|++..+... .+...|..+..++...|++++|+..|++..+.. +-+...+..+..++...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 334444444444444444443311 133344444444444444444444444444431 113334444444444444444
Q ss_pred HHHHHHHHHH
Q 010057 189 EALEIFSKMQ 198 (519)
Q Consensus 189 ~a~~~~~~m~ 198 (519)
+|...++...
T Consensus 103 ~A~~~~~~al 112 (121)
T 1hxi_A 103 AALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.91 E-value=2e-05 Score=62.91 Aligned_cols=118 Identities=12% Similarity=0.023 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHh
Q 010057 361 TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFS 440 (519)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~ 440 (519)
..+......+.+.|++++|...|...++.- +. ............ ..+ .+.+...|..+..+|.+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~--~~----------~~~~~~~~~~~~--~~~--~~~~~~~~~nla~~~~~ 75 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRL--DT----------LILREKPGEPEW--VEL--DRKNIPLYANMSQCYLN 75 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------HHHTSCTTSHHH--HHH--HHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HH----------hcccCCCCHHHH--HHH--HHHHHHHHHHHHHHHHh
Confidence 457777788888889999988888877540 00 000000000000 000 01124566667777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 441 AGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 441 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.|++++|+..+++.++.. +.+...|..+..+|...|++++|...+++..++.|+
T Consensus 76 ~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 76 IGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred cCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 777777777777777663 334566666777777777777777777777776664
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.85 E-value=6.5e-05 Score=56.02 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=46.4
Q ss_pred cCChhhHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010057 114 AGDVDGAVNIWEEMKLKE--CYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEAL 191 (519)
Q Consensus 114 ~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 191 (519)
.|++++|+..|++..+.+ -+.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355666666666655542 11134455566666666666666666666666542 224555666666666666666666
Q ss_pred HHHHHHHH
Q 010057 192 EIFSKMQE 199 (519)
Q Consensus 192 ~~~~~m~~ 199 (519)
..++....
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.80 E-value=3.1e-05 Score=70.29 Aligned_cols=98 Identities=10% Similarity=-0.051 Sum_probs=49.6
Q ss_pred hHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHH-
Q 010057 397 LGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLAGL- 473 (519)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~- 473 (519)
.+..+..+|.+.|++++|...+++..+..| +...|..+..+|...|++++|++.|++..+. .|+ ...+..+....
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH
Confidence 667778888888889998888887766533 5678888999999999999999999988765 444 44444444442
Q ss_pred HhcCChhHHHHHHHHhcccCccc
Q 010057 474 EKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 474 ~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
...+..+++...|+++.+..|+.
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCCCC
Confidence 44566778888888888777654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.78 E-value=9.5e-05 Score=67.89 Aligned_cols=121 Identities=11% Similarity=-0.095 Sum_probs=78.0
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhc---------------CCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-
Q 010057 363 YLALIGILIKLNTFPKVAEIVEEMTKA---------------GHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK- 426 (519)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 426 (519)
+..+...+.+.|++++|.+.|+..++. --+.+...+..+..+|.+.|++++|.+.++++.+..|
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 445555566666666666666666541 0122445666677777777777777777776665533
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHH
Q 010057 427 CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEI 484 (519)
Q Consensus 427 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~ 484 (519)
+...|..+..+|...|++++|++.|++..+.. +.+...+..+..++...++.+++.+
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888888888888888887762 2245555566666666666665543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0001 Score=69.95 Aligned_cols=128 Identities=5% Similarity=-0.181 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCcc--------------chhHHHHHHHHhcCCCcchHHHHhhhCCcCC-
Q 010057 361 TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLG--------------VYLGALLIHRLGSARRPVPAAKIFSLLPEDQ- 425 (519)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 425 (519)
..|..+...+.+.|++++|...|...++..-... ...+..+..+|.+.|++++|...++++.+..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3466667777777788888877777776431111 4667777778888888888888887766543
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHH-HHHHh
Q 010057 426 KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEI-YRKEK 489 (519)
Q Consensus 426 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~-~~~~~ 489 (519)
.+...|..+..+|...|++++|+..|++.++.. +-+...+..+..++.+.++.+++.+ .+++|
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888888763 3345667777777788887777653 34433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00014 Score=65.91 Aligned_cols=128 Identities=11% Similarity=-0.007 Sum_probs=78.1
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCH------------------HHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 010057 327 VISTIIEVNCDHRRRDGALLAFEYSVKMDLNLER------------------TAYLALIGILIKLNTFPKVAEIVEEMTK 388 (519)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (519)
.+......+.+.|++++|+..|+...+.. |+. ..|..+..++.+.|++++|...+...++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35556667788888888888888877643 332 2788889999999999999999999998
Q ss_pred cCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHH-HHhcCCHHHHHHHHHHHHHC
Q 010057 389 AGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGV-YFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 389 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~ 457 (519)
.. +.+...+..+..+|...|++++|...|+++.+..| +...+..+... ....+..+++.++|.+|...
T Consensus 259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 65 45677889999999999999999999999987654 45566666655 33456778888999998865
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00016 Score=69.02 Aligned_cols=113 Identities=10% Similarity=-0.049 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 123 (519)
|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.... +...|..+..+|...|++++|.+.
T Consensus 20 g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~ 96 (477)
T 1wao_1 20 KDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAALRD 96 (477)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666666666554332 334555666666666666666666666666554322 445555555666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 010057 124 WEEMKLKECYPTIVSYTAYMKI--LFLNDRVKEATDVYK 160 (519)
Q Consensus 124 ~~~m~~~~~~p~~~~~~~li~~--~~~~~~~~~a~~~~~ 160 (519)
|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 97 ~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 97 YETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6655544211 22333333333 455555555555555
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.71 E-value=7.3e-05 Score=55.48 Aligned_cols=82 Identities=11% Similarity=-0.014 Sum_probs=48.9
Q ss_pred hHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 413 PAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 413 ~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
+|.+.|++..+. +.+...|..+...|...|++++|++.|++..+.. +.+...+..+..+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444333 2345566666666667777777777776666653 22345566666666667777777777766666
Q ss_pred cCcc
Q 010057 492 IQAD 495 (519)
Q Consensus 492 ~~~~ 495 (519)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 5553
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00062 Score=64.63 Aligned_cols=94 Identities=18% Similarity=0.083 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 010057 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP-DKAACNILIE 214 (519)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~ 214 (519)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+...+. .| +...+..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3566667777777777777777777777653 235666777777777777777777777777663 33 3346666667
Q ss_pred HHHhcCChHHHHH-HHHHH
Q 010057 215 KCCKAGETRTIIL-ILRYM 232 (519)
Q Consensus 215 ~~~~~g~~~~a~~-~~~~~ 232 (519)
++.+.++.+++.+ ++..|
T Consensus 394 ~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777666553 34443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00082 Score=53.33 Aligned_cols=63 Identities=17% Similarity=0.115 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010057 137 VSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 200 (519)
..|..+..+|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|+.....
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 455566666666666666666666666542 224556666666666666666666666666553
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00074 Score=61.94 Aligned_cols=138 Identities=13% Similarity=-0.001 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 147 (519)
.+..+...+.+.|++++|.+.|+...+.- ++. . .... .++.... -+.+..+|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~--~--------~~~~-------~~~~~~~-~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS--R--------AAAE-------DADGAKL-QPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH--H--------HHSC-------HHHHGGG-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC--c--------cccC-------hHHHHHH-HHHHHHHHHHHHHHHH
Confidence 35666667777777777777777666520 000 0 0000 0000001 0113455666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010057 148 LNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIIL 227 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 227 (519)
+.|++++|.+.+++.++.. +.+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..++...++.+++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666642 2245566666667777777777777777666542 1244555566666666666655543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.63 E-value=7.3e-05 Score=70.91 Aligned_cols=123 Identities=10% Similarity=0.004 Sum_probs=78.9
Q ss_pred HHhcCCcchHHHHHHHHHhcC---C----CccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-----C---CC-chhHHH
Q 010057 370 LIKLNTFPKVAEIVEEMTKAG---H----SLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-----Q---KC-TATYTA 433 (519)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~~-~~~~~~ 433 (519)
+...|++++|+.++++.++.. + +....+++.|...|...|++++|+.++++.... + |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566666666666655311 1 112345566666666667766666666543221 2 22 457888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-cccHHHHHHHHHhcCChhHHHHHHHHhccc
Q 010057 434 LIGVYFSAGSADKALKIYKTMCRK-----GI-HPS-LGTFNVLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 434 li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
|...|...|++++|..++++..+- |- .|+ ..+...+-.++...+.+++|+..++++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887642 31 122 334455666778889999999999888653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00066 Score=64.42 Aligned_cols=89 Identities=13% Similarity=0.020 Sum_probs=66.8
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCCH-HHHHH
Q 010057 146 LFLNDRVKEATDVYKEMIQR---GLPP----NCYTYTVLMEYLVRAGKYEEALEIFSKMQEA-----G-VQPDK-AACNI 211 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~-~~~~~ 211 (519)
+...|++++|+.++++.++. -+.| ...+++.|...|...|++++|..++++..+. | -.|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55789999999999887652 1222 2457888999999999999999999887542 2 23333 37888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 010057 212 LIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 212 li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
|...|...|++++|+.++++..+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999998887654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0033 Score=48.14 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=19.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 010057 149 NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR----AGKYEEALEIFSKMQE 199 (519)
Q Consensus 149 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~ 199 (519)
.+++++|.+.|++..+.| +...+..|...|.. .++.++|.++|+...+
T Consensus 74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 344444444444444332 33333334444433 3444444444444433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00021 Score=52.33 Aligned_cols=98 Identities=13% Similarity=0.049 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCcc------chh
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLG------VYL 397 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 397 (519)
+...+..+...+...|++++|++.|+...+.. +.+...+..+..++.+.|++++|.+.++...+.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 34556677778888899999999999888764 3456778888888999999999999999988764 222 445
Q ss_pred HHHHHHHHhcCCCcchHHHHhhhCCc
Q 010057 398 GALLIHRLGSARRPVPAAKIFSLLPE 423 (519)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 423 (519)
+..+..++...|+.+.|.+.++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~~ 106 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELPE 106 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhHH
Confidence 55666667777777777777766654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0034 Score=48.11 Aligned_cols=113 Identities=10% Similarity=0.046 Sum_probs=94.6
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 010057 115 GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR----AGKYEEA 190 (519)
Q Consensus 115 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a 190 (519)
++.++|.+.|++..+.| +.... |-..|...+..++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788999999988887 33333 6677777788889999999998874 77888889889988 8899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCc
Q 010057 191 LEIFSKMQEAGVQPDKAACNILIEKCCK----AGETRTIILILRYMKENRLA 238 (519)
Q Consensus 191 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~ 238 (519)
.++|+...+.| +...+..|...|.. .+++++|...|+...+.|..
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999999875 66788889999988 89999999999998887753
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00017 Score=51.91 Aligned_cols=69 Identities=20% Similarity=0.199 Sum_probs=51.0
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 426 KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 426 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.++..|..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|.+.+++..++.+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 346677778888888888888888888887763 334566777777888888888888888877766553
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.51 E-value=4.1e-05 Score=56.33 Aligned_cols=89 Identities=11% Similarity=-0.017 Sum_probs=57.3
Q ss_pred hHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------cccHHH
Q 010057 397 LGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS-------LGTFNV 468 (519)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~~ 468 (519)
.+..+...+...|++++|.+.|++..+. +.+...|..+..+|.+.|++++|++.+++..+. .|+ ...+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHHHH
Confidence 4444555566666666666666655443 234667888888888889999999988888876 444 334455
Q ss_pred HHHHHHhcCChhHHHHHHH
Q 010057 469 LLAGLEKLGRVSDAEIYRK 487 (519)
Q Consensus 469 l~~~~~~~g~~~~a~~~~~ 487 (519)
+..++...|+.+.|...++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 5555666666666555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.001 Score=64.68 Aligned_cols=154 Identities=8% Similarity=-0.034 Sum_probs=120.4
Q ss_pred ChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC----------cchHHHHHHHHHhcCCCccchhHHHHHHHHhcCC
Q 010057 340 RRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNT----------FPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSAR 409 (519)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 409 (519)
..++|++.++.+.+.+ +-+...|+.--.++...|+ ++++.+.++.+.+.. +-+..+|+.-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 4568899999988765 2344557666666666666 889999999999865 456778888888888888
Q ss_pred --CcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc---------
Q 010057 410 --RPVPAAKIFSLLPED-QKCTATYTALIGVYFSAG-SADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKL--------- 476 (519)
Q Consensus 410 --~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~--------- 476 (519)
+++++.+.++++.+. +.|..+|+.-..++.+.| .++++++.++++++.. +-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 569999999988775 457889999888888888 8999999999998874 34677777777776653
Q ss_pred -----CChhHHHHHHHHhcccCccc
Q 010057 477 -----GRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 477 -----g~~~~a~~~~~~~~~~~~~~ 496 (519)
+.++++.++++++.++.|+.
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCC
Confidence 55789999999998887754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0086 Score=58.22 Aligned_cols=172 Identities=9% Similarity=-0.025 Sum_probs=115.5
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKR----------ISSMKYVFELMQEKGINIDAVTYTSVMHWLSN 113 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 113 (519)
...++|++.++.+.... +-+...|+.--..+...++ ++++.+.++.+.+...+ +..+|+.-..++.+
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 34567788888776443 3455567766666666665 78888888888876555 67778777777777
Q ss_pred cC--ChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc------
Q 010057 114 AG--DVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLND-RVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA------ 184 (519)
Q Consensus 114 ~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~------ 184 (519)
.+ +++++++.++++.+.... |..+|+.-...+.+.| .++++++.++++.+.... |...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccc
Confidence 77 568888888888776533 6777777777777777 778888888888776433 667777666665553
Q ss_pred --------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010057 185 --------GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 185 --------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 221 (519)
+.++++++.++...... +-|...|.-+-..+.+.+.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34577777777766542 2255566665555555554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0032 Score=48.83 Aligned_cols=61 Identities=16% Similarity=0.060 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 138 SYTAYMKILFLNDRVKEATDVYKEMIQR-----GLPPN-CYTY----TVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~-~~~~----~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
.|+.+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555555555555555555555554442 11333 2344 555556666666666666666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00029 Score=65.78 Aligned_cols=82 Identities=12% Similarity=-0.014 Sum_probs=64.9
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-cccHHHHHHHHHhcCChhHHHHHHHHhcccCccccccc
Q 010057 428 TATYTALIGVYFSAGSADKALKIYKTMCRK-----G-IHPS-LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKD 500 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 500 (519)
..+++.|..+|...|++++|+.++++..+- | -.|+ ..+++.+...|...|++++|+.+++++.++......|+
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~ 408 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 357888999999999999999999987643 2 1122 45788888899999999999999999998888888887
Q ss_pred ccchHHHHh
Q 010057 501 AVPMEEKIC 509 (519)
Q Consensus 501 ~~~~~~~i~ 509 (519)
.+.......
T Consensus 409 Hp~~~~~~~ 417 (429)
T 3qwp_A 409 HSLIEDLIL 417 (429)
T ss_dssp SHHHHHHHH
T ss_pred ChHHHHHHH
Confidence 776665543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0002 Score=66.69 Aligned_cols=101 Identities=18% Similarity=0.078 Sum_probs=75.1
Q ss_pred CCCcchHHHHhhhCCcC-----CCC----chhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-cccHHHHHH
Q 010057 408 ARRPVPAAKIFSLLPED-----QKC----TATYTALIGVYFSAGSADKALKIYKTMCRK-----G-IHPS-LGTFNVLLA 471 (519)
Q Consensus 408 ~g~~~~A~~~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~t~~~l~~ 471 (519)
.|++++|+.++++..+. +|+ ..+++.|..+|...|++++|+.++++..+- | -.|+ ..+++.+..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666666543211 222 357899999999999999999999988653 3 1222 457888999
Q ss_pred HHHhcCChhHHHHHHHHhcccCcccccccccchHHHH
Q 010057 472 GLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKI 508 (519)
Q Consensus 472 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i 508 (519)
.|...|++++|+.+++++.++......|+.+....+.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~ 427 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIK 427 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 9999999999999999999988888888776655543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0055 Score=45.03 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010057 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMK 128 (519)
Q Consensus 65 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 128 (519)
+...+..+...|...|++++|...|+...+.... +...|..+..++...|++++|...|++..
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555555555443221 34444445555555555555555555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.002 Score=45.21 Aligned_cols=77 Identities=9% Similarity=-0.046 Sum_probs=38.3
Q ss_pred CchhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccccccc
Q 010057 427 CTATYTALIGVYFSAGS---ADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAVP 503 (519)
Q Consensus 427 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 503 (519)
|+..+..+..++...++ .++|..++++..+.. +-+...+..+...+.+.|++++|..+|+++.+..|. .|+...
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~--~~~~~~ 81 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP--NLDRVT 81 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT--TCCHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CccHHH
Confidence 34445555555443332 455556665555552 222344444445555566666666666665555554 444433
Q ss_pred hHH
Q 010057 504 MEE 506 (519)
Q Consensus 504 ~~~ 506 (519)
...
T Consensus 82 i~~ 84 (93)
T 3bee_A 82 IIE 84 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00032 Score=54.33 Aligned_cols=107 Identities=14% Similarity=0.086 Sum_probs=59.6
Q ss_pred ccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHH
Q 010057 337 DHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAK 416 (519)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 416 (519)
+.+.+++|++.++...+.. +-+...|..+..++...++++.+..... .+++|+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eAi~ 67 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHh-------------------------HHHHHHH
Confidence 3345666666666666554 3345555555556665555442222111 1345555
Q ss_pred HhhhCCcCCC-CchhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 010057 417 IFSLLPEDQK-CTATYTALIGVYFSA-----------GSADKALKIYKTMCRKGIHPSLGTFNVLLA 471 (519)
Q Consensus 417 ~~~~~~~~~~-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~ 471 (519)
.|++..+..| +...|..+..+|... |++++|++.|++..+. .|+...|...+.
T Consensus 68 ~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 5555544333 355666677777665 4788888888888776 566555544433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0091 Score=41.34 Aligned_cols=62 Identities=21% Similarity=0.368 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 137 VSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344445555555555555555555555432 22344555555555555555555555555554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0077 Score=41.71 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010057 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181 (519)
Q Consensus 102 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 181 (519)
..+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344555555555566666666655555432 1134455555556666666666666666655532 12334444444433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0026 Score=56.85 Aligned_cols=136 Identities=13% Similarity=-0.002 Sum_probs=87.4
Q ss_pred CcCHHHHHHHHHHHHhc--C---CcchHHHHHHHHHhcCCCccchhHHHHHHHHh----cCCC-------cchHHHHhhh
Q 010057 357 NLERTAYLALIGILIKL--N---TFPKVAEIVEEMTKAGHSLGVYLGALLIHRLG----SARR-------PVPAAKIFSL 420 (519)
Q Consensus 357 ~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~-------~~~A~~~~~~ 420 (519)
+.+...|...+++.... + +..+|..+|++.++.. +-....+..+..+|. ..+. ...+.+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 44555666666554322 2 2456777777777654 122233333333321 1100 1112222222
Q ss_pred CCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 421 LPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 421 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
+...+.++..|..+...+...|++++|+..++++.+.+ |+...|..+...+.-.|++++|.+.+++...+.|.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 33335567888888888888899999999999999985 78777777788889999999999999999888774
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00041 Score=49.61 Aligned_cols=86 Identities=15% Similarity=0.083 Sum_probs=56.6
Q ss_pred HHHhcCCCcchHHHHhhhCCcCCC-Cch-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCCh
Q 010057 403 HRLGSARRPVPAAKIFSLLPEDQK-CTA-TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLG-TFNVLLAGLEKLGRV 479 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~g~~ 479 (519)
..+...|++++|.+.|+.+.+..| +.. .|..+..+|...|++++|++.|++..+. .|+.. .+.. +.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH--------HHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH--------HHH
Confidence 344555666666666665544333 356 7788888888899999999999988877 34433 2211 566
Q ss_pred hHHHHHHHHhcccCccccc
Q 010057 480 SDAEIYRKEKKSIQADALS 498 (519)
Q Consensus 480 ~~a~~~~~~~~~~~~~~~~ 498 (519)
.++...+++.....|+...
T Consensus 78 ~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 78 MDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHhccCccccc
Confidence 7778888777666665443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0051 Score=43.92 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444555555555554444432 1123344444444555555555554444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0079 Score=46.56 Aligned_cols=67 Identities=10% Similarity=-0.105 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChh----------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010057 45 PMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRIS----------SMKYVFELMQEKGINIDAVTYTSVMHWLSNA 114 (519)
Q Consensus 45 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~----------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 114 (519)
.+++|++.++...+.. +.+...|..+..++...++++ +|...|++..+.... +...|..+-.+|...
T Consensus 17 ~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 4566666666665443 445666666666666655543 455555554444222 334444444444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0035 Score=44.58 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=53.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHhcccCcccc
Q 010057 434 LIGVYFSAGSADKALKIYKTMCRKGIHPSLG-TFNVLLAGLEKLGRVSDAEIYRKEKKSIQADAL 497 (519)
Q Consensus 434 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 497 (519)
....+.+.|++++|++.|++..+.. +.+.. .+..+..+|...|++++|.+.+++..++.|+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 5667888999999999999999873 33456 788888999999999999999999999887643
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.064 Score=48.01 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=30.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 135 TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
+..+|.++...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444444444444455555555555555432 4444444444444555555555555554444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.067 Score=54.91 Aligned_cols=122 Identities=11% Similarity=0.143 Sum_probs=65.1
Q ss_pred HhcCChhHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 010057 77 GEAKRISSMKY-VFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 77 ~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 155 (519)
...+++++|.+ ++..+. +......++..+.+.|..+.|.++.+.-. .-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 34566666655 432111 12223566666666677776665542110 112233456777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
.++.+.+ .+...|..|...+.+.++++.|.+.|..+.+ |..+...|...|+.+...++-+.
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 6664332 2556677777777777777777777766543 33444444445555554444433
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.014 Score=54.37 Aligned_cols=87 Identities=9% Similarity=-0.073 Sum_probs=69.3
Q ss_pred hcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCCH-HHHHHHH
Q 010057 148 LNDRVKEATDVYKEMIQR---GLPPN----CYTYTVLMEYLVRAGKYEEALEIFSKMQEA-----G-VQPDK-AACNILI 213 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~-~~~~~li 213 (519)
..|++++|+.++++.++. -+.|+ ..+++.|...|...|++++|+.++++..+. | -.|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 367899999999987752 12233 357899999999999999999999988642 2 23444 3889999
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 010057 214 EKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~~~~ 234 (519)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998765
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0048 Score=47.21 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=52.1
Q ss_pred CCCchhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 425 QKCTATYTALIGVYFSAG---SADKALKIYKTMCRKGIHP--SLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 425 ~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
+++..+...+.+++++.+ +.++++.+|++..+.+ .| ....+-.+.-+|.+.|++++|.++++.+.+++|+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 355667777788888877 5558888888888764 24 24555566667888888888888888888888854
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.063 Score=39.49 Aligned_cols=116 Identities=12% Similarity=0.006 Sum_probs=68.7
Q ss_pred hhccCChhHHHHHHHhCCCCCCHHHHHHHHh-------------------------cCCChHHHHHHHHHHhhcCCCCCC
Q 010057 11 ILKYSTWDSAQDLLKNLPIKWDSYTVNQVLK-------------------------THPPMEKAWLFFNWVSRSRGFNHD 65 (519)
Q Consensus 11 ~~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~-------------------------~~~~~~~A~~~~~~~~~~~~~~~~ 65 (519)
++-.|..++-.++..+.--+-+...+|.+|. .||+..+....+-.+ ..+
T Consensus 17 ~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~------n~~ 90 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN------NTL 90 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT------TCC
T ss_pred HHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh------cch
Confidence 4556777787888877622234444555543 235555555555443 334
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECY 133 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 133 (519)
.......+..+...|+-+...+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.+..+.|++
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 45556666666666666666666666433 23456666666666677777766676666666666643
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.025 Score=39.47 Aligned_cols=78 Identities=6% Similarity=-0.066 Sum_probs=52.7
Q ss_pred ccchhHHHHHHHHhcCCC---cchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH
Q 010057 393 LGVYLGALLIHRLGSARR---PVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNV 468 (519)
Q Consensus 393 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 468 (519)
.++..+..+..++...++ .++|..++++..... .++.....+...+.+.|++++|+..|+++.+.. |+......
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~--p~~~~~~~ 81 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN--DPNLDRVT 81 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC--CTTCCHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCccHHH
Confidence 445555555555543333 577777777766543 457788888999999999999999999999874 44333344
Q ss_pred HHHH
Q 010057 469 LLAG 472 (519)
Q Consensus 469 l~~~ 472 (519)
+...
T Consensus 82 i~~~ 85 (93)
T 3bee_A 82 IIES 85 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.033 Score=51.92 Aligned_cols=92 Identities=16% Similarity=0.110 Sum_probs=67.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCCH-HH
Q 010057 143 MKILFLNDRVKEATDVYKEMIQR---GLPPN----CYTYTVLMEYLVRAGKYEEALEIFSKMQEA-----G-VQPDK-AA 208 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~-~~ 208 (519)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.|...|...|++++|+.++++.... | ..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44456778899999998888753 12232 357888888899999999999988877532 2 23333 37
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 209 CNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888899999999999998887654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.19 Score=39.53 Aligned_cols=130 Identities=12% Similarity=0.068 Sum_probs=91.9
Q ss_pred HHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcch
Q 010057 334 VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVP 413 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (519)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|...... ..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---------~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSF---------DKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH---------HHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH---------HHHHHHHHHhCCHHH
Confidence 345689999999987765 46788999999999999999999999887432 335555666777766
Q ss_pred HHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 414 AAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 414 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
-.++-+..... .-++.....+...|+.++++++|.+. |-.| .........|..+.|.++.+++..
T Consensus 79 L~kla~iA~~~----g~~n~af~~~l~lGdv~~~i~lL~~~---~r~~------eA~~~A~t~g~~~~a~~~~~~~~~ 143 (177)
T 3mkq_B 79 LSKMQNIAQTR----EDFGSMLLNTFYNNSTKERSSIFAEG---GSLP------LAYAVAKANGDEAAASAFLEQAEV 143 (177)
T ss_dssp HHHHHHHHHHT----TCHHHHHHHHHHHTCHHHHHHHHHHT---TCHH------HHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHC----ccHHHHHHHHHHcCCHHHHHHHHHHC---CChH------HHHHHHHHcCcHHHHHHHHHHhCC
Confidence 66655544332 24677778888899999999998553 3222 122223346778889999887743
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.026 Score=58.01 Aligned_cols=156 Identities=11% Similarity=0.039 Sum_probs=99.1
Q ss_pred HHHhcCCHHHHHH-HHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcc
Q 010057 299 ILLKKKNLVAIDS-LLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFP 377 (519)
Q Consensus 299 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (519)
.....++++.|.+ ++..+ ++......++..+.+.|.++.|+++.+. | . .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~--~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------Q--D---QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------H--H---HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------c--c---hheehhhhcCCHH
Confidence 4455778888766 54221 1122336677777778888888766531 1 1 1123345678888
Q ss_pred hHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 378 KVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
.|.++.+.+ .+...|..+...+.+.++++.|++.|.++.. |..+...|...|+.+...++-+.....
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888775433 4667888888888999999999999888765 556666666677777666665555554
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 458 GIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 458 g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
| -++....+|.+.|++++|.+++.++..
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 4 234444455666666666666655543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.022 Score=40.83 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 432 TALIGVYFSAGSADKALKIYKTMCRKG------IHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 432 ~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
-.|...+.+.|+++.|...|++..+.- -.+....+..+..++.+.|++++|..+++++.++.|+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 344555555555555555555544320 0122334555555555555555555555555555544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.091 Score=45.04 Aligned_cols=94 Identities=9% Similarity=0.097 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh-----cCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCHH
Q 010057 83 SSMKYVFELMQEKGINID---AVTYTSVMHWLSN-----AGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLN-DRVK 153 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~~~~ 153 (519)
..|..++++..+. .|+ ...|..+...|.. .|+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4555555555554 333 3456666666666 367777777777666653221355566666666663 6677
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHH
Q 010057 154 EATDVYKEMIQRGLP--PNCYTYTVLM 178 (519)
Q Consensus 154 ~a~~~~~~m~~~g~~--p~~~~~~~li 178 (519)
++.+.+++.+..... |+....+.+-
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 777777776665444 5544444433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.41 Score=35.33 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH 391 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (519)
+...+...+..+...|+-++-.+++..+.. +.+|++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344455566666777777777777777544 3466777777788888888888888888888877774
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.67 Score=36.44 Aligned_cols=99 Identities=12% Similarity=0.142 Sum_probs=51.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 010057 76 FGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 155 (519)
..+.|+++.|.++.+.+ -+...|..|-......|+++-|.+.|.+.. -+..+.-.|...|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---------D~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH---------SFDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---------CHHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---------CHHHHHHHHHHhCCHHHH
Confidence 34556666666665443 255566666666666666666666665542 123344444455555554
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFS 195 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 195 (519)
.++-+.....| -++.-..++.-.|+++++.++|.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 44443333332 13334444455566666666553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.22 Score=38.11 Aligned_cols=80 Identities=13% Similarity=0.063 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHH
Q 010057 84 SMKYVFELMQEKGINIDAVTYTSVMHWLSNAG---DVDGAVNIWEEMKLKECYP--TIVSYTAYMKILFLNDRVKEATDV 158 (519)
Q Consensus 84 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~ 158 (519)
.+.+-|.+..+.|. ++..+...+..++++++ +.++++.+|++..+.. .| ....+-.|.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444444443 45555555666666655 4446666666665542 12 233444444455666666666666
Q ss_pred HHHHHHC
Q 010057 159 YKEMIQR 165 (519)
Q Consensus 159 ~~~m~~~ 165 (519)
++.+++.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.59 E-value=0.36 Score=34.30 Aligned_cols=65 Identities=9% Similarity=0.057 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 170 NCYTYTVLMEYLVRAGKYEEALEIFSKMQEA------GVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 170 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
+...+..|...+.+.++++.|...|+...+. .-.+...++..|..++.+.|+++.|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344445555555555555555555554432 0112334555556666666666666666665554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.9 Score=39.02 Aligned_cols=94 Identities=12% Similarity=0.094 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHCCCCCC---hhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHH
Q 010057 119 GAVNIWEEMKLKECYPT---IVSYTAYMKILFL-----NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA-GKYEE 189 (519)
Q Consensus 119 ~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~~~~~ 189 (519)
.|..++++..+. .|+ -..|..+...|.+ .|+.++|.+.|++.++.+..-+..++......++.. |+.++
T Consensus 181 ~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 181 AAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 455555655554 344 4577788888887 488888888888888853221367777778888774 88888
Q ss_pred HHHHHHHHHHcCCC--CCHHHHHHHHH
Q 010057 190 ALEIFSKMQEAGVQ--PDKAACNILIE 214 (519)
Q Consensus 190 a~~~~~~m~~~g~~--p~~~~~~~li~ 214 (519)
+.+.+++....... |+....+.+-+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 88888888887655 66555555433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.75 E-value=0.092 Score=38.58 Aligned_cols=67 Identities=13% Similarity=0.089 Sum_probs=37.0
Q ss_pred chhHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 428 TATYTALIGVYFSAGSADK---ALKIYKTMCRKGIHP--SLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
..+--.+.+++.+..+... ++.++++..+.+ .| ....+-.+.-++.+.|++++|.++++.+.+++|+
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 4444445555555555444 566666655543 12 2233444445666667777777777666666664
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.47 E-value=1.4 Score=33.41 Aligned_cols=30 Identities=7% Similarity=0.076 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHhcCCh------hhHHHHHHHHHH
Q 010057 100 DAVTYTSVMHWLSNAGDV------DGAVNIWEEMKL 129 (519)
Q Consensus 100 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~ 129 (519)
|..+|-..+...-+.|+. ++..++|++...
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia 47 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE 47 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH
Confidence 444555555555555555 555555555444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.96 E-value=0.65 Score=34.78 Aligned_cols=84 Identities=14% Similarity=0.104 Sum_probs=57.0
Q ss_pred CCCchhHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccccc
Q 010057 425 QKCTATYTALIGVYFSAGSAD---KALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDA 501 (519)
Q Consensus 425 ~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 501 (519)
.+++.+--.+.+++.+..+.+ +++.++++....+-.-....+-.+.-++.+.|++++|.++.+.+.+++|+. ...
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n--~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN--KQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC--HHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc--HHH
Confidence 355566666777787776544 578888888876322234455566678899999999999999999998863 233
Q ss_pred cchHHHHhh
Q 010057 502 VPMEEKICD 510 (519)
Q Consensus 502 ~~~~~~i~~ 510 (519)
.++...|.+
T Consensus 114 ~~Lk~~Ie~ 122 (144)
T 1y8m_A 114 GALKSMVED 122 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.93 E-value=1.3 Score=33.46 Aligned_cols=105 Identities=10% Similarity=0.145 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHhcCChhhHHHHHHHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRI------SSMKYVFELMQEKGINIDAV----TYTSVMH---WLSNAGDVDGAVNIWEEMKL 129 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~----~~~~li~---~~~~~g~~~~a~~~~~~m~~ 129 (519)
+-|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|.-+-- .+...++.++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44677787777777777887 7777888877663 444321 1111111 11234677777777777765
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010057 130 KECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPP 169 (519)
Q Consensus 130 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 169 (519)
.+-.- ...|.....-=.+.|++..|.+++......+..|
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 42111 4455555555556777777777777777765443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.64 E-value=0.78 Score=33.68 Aligned_cols=65 Identities=12% Similarity=-0.007 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHhcCChhh---HHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 99 IDAVTYTSVMHWLSNAGDVDG---AVNIWEEMKLKECYP--TIVSYTAYMKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 99 ~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 164 (519)
|+..+-..+..++.++..... ++.+++++...+ .| .....-.|.-++.+.|++++|.+.++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444555555544333 555555544432 11 122233333445555555555555555554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.13 E-value=0.48 Score=34.95 Aligned_cols=71 Identities=14% Similarity=0.069 Sum_probs=51.2
Q ss_pred CCchhHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 426 KCTATYTALIGVYFSAGSA---DKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 426 ~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
|++.+--.+.+++.+..+. .+++.++++..+.+-.-....+-.+.-++.+.|++++|.++.+.+.+++|+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 4455555666777776554 4578888888876521235566667778899999999999999999888864
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.09 E-value=0.97 Score=31.29 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 82 ISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 82 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
.=++.+-++.+....+.|++.+..+.+++|-|.+++..|.++|+-.+.+. .+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 34556666666667777777777777777777777777777777776542 223445666553
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.52 E-value=1.2 Score=40.82 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 010057 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ-----RGLPPNCYTYT 175 (519)
Q Consensus 102 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~ 175 (519)
.....++.++...|+.+++...+..+.... +.+...|..+|.++.+.|+..+|++.|+.... .|+.|+..+-.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 355667888889999999999988887653 34778999999999999999999999988754 49999987754
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=90.42 E-value=0.00018 Score=65.60 Aligned_cols=89 Identities=8% Similarity=-0.074 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHH
Q 010057 359 ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGV 437 (519)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~ 437 (519)
++.||-.+-.+|...+.+.-|.-.--.++-.. .-...++..|-..|.+++-+.+++.-... ..-...|+-|.-.
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaIL 272 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 272 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 55677777778888887776654444443211 11123566777888888888888765543 2335677778777
Q ss_pred HHhcCCHHHHHHHHHH
Q 010057 438 YFSAGSADKALKIYKT 453 (519)
Q Consensus 438 ~~~~g~~~~A~~~~~~ 453 (519)
|++- ++++..+.++.
T Consensus 273 YsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 273 YSKF-KPQKMREHLEL 287 (624)
T ss_dssp HHSS-CTTHHHHHHTT
T ss_pred HHhc-CHHHHHHHHHH
Confidence 7775 55555555443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.57 E-value=9.9 Score=35.42 Aligned_cols=186 Identities=12% Similarity=0.066 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHHHhc-----CCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHH----HhcC
Q 010057 304 KNLVAIDSLLSGIMDK-----SIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGIL----IKLN 374 (519)
Q Consensus 304 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~ 374 (519)
+++..|.+.+-.+.+. +..........++..|...++++...+.+..+.+..-... .....+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk-~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK-LSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcCC
Confidence 5666776666555432 3455677788888899999999988888877765432222 2223333322 2333
Q ss_pred CcchHHHHHHHHHh-----cC-CCc---cchhHHHHHHHHhcCCCcchHHHHhhhCCcC--CCC-----chhHHHHHHHH
Q 010057 375 TFPKVAEIVEEMTK-----AG-HSL---GVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKC-----TATYTALIGVY 438 (519)
Q Consensus 375 ~~~~a~~~~~~~~~-----~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-----~~~~~~li~~~ 438 (519)
..+.... ...+.. .| +-. .......|...|...|++.+|.+++..+... +.+ ...|..-++.|
T Consensus 109 ~~d~~~~-~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 109 SLDLNTR-ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp TTHHHHH-HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred chhHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3332111 111111 11 111 2233456778888899999999998876432 111 34677788888
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCCC--cccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 439 FSAGSADKALKIYKTMCRK----GIHPS--LGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
...+++.+|..++++.... ...|+ ..-+...+..+...+++.+|-+.|.++-+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999999998886432 11222 12455566677788888888777766543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.43 E-value=2 Score=39.32 Aligned_cols=109 Identities=13% Similarity=0.109 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHH---hcCChhhHHHHHHHHHHC--CC-CCCh------------------hhHHHHHHHHHhcCCHHHH
Q 010057 100 DAVTYTSVMHWLS---NAGDVDGAVNIWEEMKLK--EC-YPTI------------------VSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 100 ~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~--~~-~p~~------------------~~~~~li~~~~~~~~~~~a 155 (519)
|...|..++.... ..|+.+.|.+.+.+.... |. -++. .+...++..+...|+++++
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4455555554322 346777777777766543 21 1111 1122344455566777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE-----AGVQPDKAAC 209 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~ 209 (519)
...+..+... -+.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-
T Consensus 191 ~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 191 IAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 7776666654 234666777777777777777777777766543 3677766543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.16 E-value=2.9 Score=41.65 Aligned_cols=125 Identities=19% Similarity=0.232 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCC-hhhHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcC-CHHHHHHHHHHHHHC------CCCC-CHH
Q 010057 104 YTSVMHWLSNAGD-VDGAVNIWEEMKLKECYPTIVS--YTAYMKILFLND-RVKEATDVYKEMIQR------GLPP-NCY 172 (519)
Q Consensus 104 ~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~-~~~~a~~~~~~m~~~------g~~p-~~~ 172 (519)
...++..+...++ .+.|..+|+++... .|...+ ...++..+.+.+ +--+|.+++.+..+. ...+ +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3445555555555 47788888887766 233222 222333333322 233455555444321 1111 111
Q ss_pred ----------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 173 ----------TYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP-DKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 173 ----------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
....-...+...|+++-|+++-++.... .| +-.+|..|..+|...|+++.|+-.+..+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1111234556678888888888887764 34 4558888888888888888888777765
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.11 E-value=14 Score=34.34 Aligned_cols=190 Identities=12% Similarity=0.135 Sum_probs=120.4
Q ss_pred CChHHHHHHHHHHhh----cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcC
Q 010057 44 PPMEKAWLFFNWVSR----SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLS----NAG 115 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g 115 (519)
++++.|++.+-.+.+ .............++..|...++++...+.+..+.+..-. .......+++.+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 567778876655542 2334556788899999999999999998888777654322 2333344444332 233
Q ss_pred ChhhHH--HHHHHHHH---CCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHH
Q 010057 116 DVDGAV--NIWEEMKL---KECYP---TIVSYTAYMKILFLNDRVKEATDVYKEMIQR--GLPPN---CYTYTVLMEYLV 182 (519)
Q Consensus 116 ~~~~a~--~~~~~m~~---~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~li~~~~ 182 (519)
..+... .+.+.... ..+-. .......|...+...|++.+|.+++.++... |.-+. ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 333211 11111111 01111 1123356778899999999999999998753 22211 346677888999
Q ss_pred HcCCHHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 183 RAGKYEEALEIFSKMQE----AGVQPDK--AACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 183 ~~~~~~~a~~~~~~m~~----~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
..+++.+|..++..+.. ....|+. ..+...+..+...+++..|.+.|.++.+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999999999988742 1222222 3566777788888999998888877654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.03 E-value=9.7 Score=40.63 Aligned_cols=194 Identities=14% Similarity=0.065 Sum_probs=119.1
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhC----CC-------------
Q 010057 294 QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM----DL------------- 356 (519)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~------------- 356 (519)
..++..+...+..+.+..+..-+ ..+...--.+..+|...|++++|.+.|.+.... ..
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34555666667776666554332 123333345666788899999999999865321 00
Q ss_pred -----CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCcc----chhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC
Q 010057 357 -----NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLG----VYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC 427 (519)
Q Consensus 357 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 427 (519)
..-..-|..++..+.+.+.++.+.++-...++..-+.+ ...+..+++.+...|++++|...+-.++...--
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 00112377888899999999999999888876432222 226788899999999999999999877654333
Q ss_pred chhHHHHHHHHHhcCCHHH------------HHHHHHHHHHCC-CCCCcccH-HHHHHHHHhcCChhH-HHHHHHHhccc
Q 010057 428 TATYTALIGVYFSAGSADK------------ALKIYKTMCRKG-IHPSLGTF-NVLLAGLEKLGRVSD-AEIYRKEKKSI 492 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~------------A~~~~~~m~~~g-~~p~~~t~-~~l~~~~~~~g~~~~-a~~~~~~~~~~ 492 (519)
......|+..++..|..+. ..+++....+.- ...+...| ..|..=+...|++.+ |..+|+.+..+
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 5567777777776665444 333433222110 01111234 444444466666655 56677776554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.95 E-value=4.3 Score=28.15 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 152 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
.-+..+-++.+....+.|++....+.+++|-+.+++..|.++|+-++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555555555543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.66 E-value=2.9 Score=41.62 Aligned_cols=129 Identities=13% Similarity=0.087 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHC------CCCC-Chhh
Q 010057 68 TYTTMLDIFGEAKR-ISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD-VDGAVNIWEEMKLK------ECYP-TIVS 138 (519)
Q Consensus 68 ~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~------~~~p-~~~~ 138 (519)
.-..+++.+...++ .+.|..+|+.+.+.....+......++..+...++ --+|.+++.+..+. ...+ +...
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 44556666666666 57899999999887332222222333443333332 22355555444321 1111 1110
Q ss_pred -----H-HHHH----HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 139 -----Y-TAYM----KILFLNDRVKEATDVYKEMIQRGLPP-NCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 139 -----~-~~li----~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
+ ..|+ .-+...|+++.|+++-++.... .| +-.+|..|..+|...|+++.|+-.+..+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1 1133 3356789999999999998885 44 57799999999999999999999988874
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=87.93 E-value=6.1 Score=29.13 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 82 ISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 82 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
.=+..+-++.+....+.|++.+..+.+++|-+.+|+..|.++|+-.+.+- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33556666677777778888888888888888888888888888776552 233555666663
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=87.65 E-value=0.0015 Score=59.71 Aligned_cols=119 Identities=11% Similarity=-0.004 Sum_probs=66.1
Q ss_pred CCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHH
Q 010057 288 GPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALI 367 (519)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 367 (519)
..+.+|..+.......+.+.+|.+.|-+ .-|+..|..+|.+..+.|.+++-+.++...++..-.| ..=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHH
Confidence 3445666666666666555555433221 1244556677777777777777777776666543333 3334666
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhC
Q 010057 368 GILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLL 421 (519)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (519)
-+|++.+++.+..+++. .||..-...+.+-|...|.++.|.-+|..+
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 67777776654432221 244444455555566666666666555543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.24 E-value=13 Score=39.71 Aligned_cols=128 Identities=12% Similarity=0.020 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCC-C-CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010057 104 YTSVMHWLSNAGDVDGAVNIWEEMKLKEC-Y-PT--IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179 (519)
Q Consensus 104 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~-p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 179 (519)
|..++..+.+.|.++.+.++-....+... . ++ ...|..+.+++...|++++|-..+-.+..... -......|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence 55566666666666666655544433211 1 11 11456666666666666666666666655422 2344444544
Q ss_pred HHHHc------------CCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHH
Q 010057 180 YLVRA------------GKYEEALEIFSKMQEAG--VQPDKAACNILIEKCCKAGETRTIILI-LRYMK 233 (519)
Q Consensus 180 ~~~~~------------~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~~~ 233 (519)
..+.. |..+++.+++..-.+.. +...+.-|..|=.-+...|++.+|-.+ |+.+.
T Consensus 980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 44433 34456666665433211 111112344444445566776655444 44443
|
| >3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.56 E-value=20 Score=33.07 Aligned_cols=156 Identities=12% Similarity=0.123 Sum_probs=77.8
Q ss_pred hhhhHHhhhccC--ChhHHHHHHHhCCCCCCHHHHHHHHhcC-------C-C-hHHHH--------HHHHHHhhcCCCCC
Q 010057 4 TISNVYKILKYS--TWDSAQDLLKNLPIKWDSYTVNQVLKTH-------P-P-MEKAW--------LFFNWVSRSRGFNH 64 (519)
Q Consensus 4 ~~~~i~~~~~~~--~~~~a~~~~~~~~~~p~~~~~~~ll~~~-------~-~-~~~A~--------~~~~~~~~~~~~~~ 64 (519)
++..+..+++.| ++..++.+++.+....+...|..++... . . ..+.. +++.....+.|..+
T Consensus 111 LidD~~~La~ag~~~~~~~l~l~~yL~~E~~y~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lgw~~ 190 (419)
T 3rjo_A 111 LINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTD 190 (419)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHGGGGGCCSHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 455556666666 5566777777776666777777666543 1 1 01111 12222223344444
Q ss_pred C-----HHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 010057 65 D-----RFTYTTMLDIFGEAKR---ISSMKYVFELMQEKG----INIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKEC 132 (519)
Q Consensus 65 ~-----~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 132 (519)
+ ...-..++...|..|+ .+.|.+.|+.....+ ++||... .+...-.+ ..+.-..+++.....
T Consensus 191 ~~~~~~~~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~--~Vy~~~~~--~~~~~~~l~~~y~~s-- 264 (419)
T 3rjo_A 191 EGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL--AVFAVGAQ--STEGWDFLYSKYQFS-- 264 (419)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHH--HHHHHHTT--SHHHHHHHHHHHHHC--
T ss_pred CchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcce--eEEeeeeC--CHHHHHHHHHHHhcC--
Confidence 3 1223445555556655 345666666655432 4444321 11111111 133333444444443
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010057 133 YPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRG 166 (519)
Q Consensus 133 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 166 (519)
.+..--..++.+++...+.....++++......
T Consensus 265 -~~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~ 297 (419)
T 3rjo_A 265 -LSSTEKSQIEFALCRTQNKEKLQWLLDESFKGD 297 (419)
T ss_dssp -CCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTS
T ss_pred -CCHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCC
Confidence 234445566777777777777777776666544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.11 E-value=3.3 Score=32.00 Aligned_cols=58 Identities=7% Similarity=-0.040 Sum_probs=36.1
Q ss_pred HHHHHhccCChhhHHHHHHHHHhC-CCCcCH-------HHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 010057 331 IIEVNCDHRRRDGALLAFEYSVKM-DLNLER-------TAYLALIGILIKLNTFPKVAEIVEEMTK 388 (519)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (519)
-++.+...+.++.|+-+...+... +..|+. .++..+.+++...+++.+|...|+..++
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344455566777776666654432 112221 2456677788888888888888888753
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=86.02 E-value=8.6 Score=28.38 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010057 153 KEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 153 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 200 (519)
-+..+-++.+....+.|++....+.+++|-+.+++..|..+|+-++..
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344445555555555666666666666666666666666666655543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.51 E-value=2.8 Score=32.35 Aligned_cols=115 Identities=8% Similarity=0.005 Sum_probs=60.6
Q ss_pred hhhhhHHhhhccCChhHHHHHHHhC----CCCCCH----------HHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCH-H
Q 010057 3 DTISNVYKILKYSTWDSAQDLLKNL----PIKWDS----------YTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDR-F 67 (519)
Q Consensus 3 ~~~~~i~~~~~~~~~~~a~~~~~~~----~~~p~~----------~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~-~ 67 (519)
.+++.+..+...+.++.|+-+..-+ +..|+. .-+...+-..+++.+|...|++..+....-+.. .
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4567777777777777777777654 333442 223333344577777777777754322221211 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK 130 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 130 (519)
+...+ ........ .....++.+.--.+-.+|.+.++.++|+.+++.+...
T Consensus 102 ~~~~~----~~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 102 VRPST----GNSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccccc----cccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 11111 00000000 0112234566666788889999999999998876443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=81.56 E-value=31 Score=31.34 Aligned_cols=224 Identities=8% Similarity=0.012 Sum_probs=118.2
Q ss_pred hhhHHhhhccCChhHHHHHHHhC----CCCCCHH---HHHHHHhcC----CC----hHHHHHHHHHHhhcCCCCCCHHHH
Q 010057 5 ISNVYKILKYSTWDSAQDLLKNL----PIKWDSY---TVNQVLKTH----PP----MEKAWLFFNWVSRSRGFNHDRFTY 69 (519)
Q Consensus 5 ~~~i~~~~~~~~~~~a~~~~~~~----~~~p~~~---~~~~ll~~~----~~----~~~A~~~~~~~~~~~~~~~~~~~~ 69 (519)
+.....|.+.|+.++..+++... +.-|-+. ....++..+ +. ++-..+.++|...+...=.....=
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~ 102 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLE 102 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445577889999999999887 2222222 234445443 33 334455566663221100011112
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC--CCC---CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC--CCCCChhhHH--
Q 010057 70 TTMLDIFGEAKRISSMKYVFELMQEK--GIN---IDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK--ECYPTIVSYT-- 140 (519)
Q Consensus 70 ~~li~~~~~~~~~~~a~~~~~~m~~~--~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~-- 140 (519)
.-++..|...|++.+|.+++..+.+. ... --..+|..-++.|...++..++...+...... .+.|+.....
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 35778888999999998888887762 111 11345666778888889999999888877543 2222332221
Q ss_pred HHH--HHHH-hcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHH-HHHHcCCCCCHHHHH
Q 010057 141 AYM--KILF-LNDRVKEATDVYKEMIQRGLPPN------CYTYTVLMEYLVRAGKYEEALEIFS-KMQEAGVQPDKAACN 210 (519)
Q Consensus 141 ~li--~~~~-~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~g~~p~~~~~~ 210 (519)
-.. ..+. ..+++..|...|-+..+.=-... ...|..|... -.++..+...++. .....-..|....+.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL--l~~~r~el~~~l~~~~~~~~~~pei~~l~ 260 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI--MLGQSDDVNQLVSGKLAITYSGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HTTCGGGHHHHHHSHHHHTTCSHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH--HcCCHHHHHHHhccccccccCCccHHHHH
Confidence 111 2344 67888888887766543100111 1123222222 2223222222221 111111245555666
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 010057 211 ILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 211 ~li~~~~~~g~~~~a~~~~~~ 231 (519)
.++.+| ..+++.....++..
T Consensus 261 ~L~~a~-~~~dl~~f~~iL~~ 280 (394)
T 3txn_A 261 SVAEAS-HKRSLADFQAALKE 280 (394)
T ss_dssp HHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHH-HhCCHHHHHHHHHH
Confidence 666665 45677666666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 519 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.51 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.49 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.19 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.08 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.05 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.03 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.02 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.97 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.88 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.88 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.83 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.83 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.46 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.46 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.45 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.39 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.37 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.37 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.28 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.24 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.17 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.15 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.15 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.03 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.99 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.97 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.72 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.69 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.65 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.63 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.59 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.59 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.57 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.57 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.54 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.52 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.32 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.3 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.27 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.27 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.25 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.15 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.13 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.1 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.04 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.02 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.0 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.78 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.7 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.81 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.81 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.53 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.23 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.93 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.11 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.8 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 87.72 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.7 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 83.61 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=9.4e-20 Score=168.91 Aligned_cols=374 Identities=15% Similarity=0.074 Sum_probs=190.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 123 (519)
|++++|.+.|+.+.+.. +-+...+..+...|.+.|++++|...++...+.... +..+|..+..++.+.|++++|...
T Consensus 13 G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~~A~~~ 89 (388)
T d1w3ba_ 13 GDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccccccccc
Confidence 55555555555554332 234445555555555555555555555555544222 344555555555555555555555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010057 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQ 203 (519)
Q Consensus 124 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 203 (519)
+....+.... +...+..........+....+........... .................+....+...+....... +
T Consensus 90 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 166 (388)
T d1w3ba_ 90 YRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred cccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC-c
Confidence 5555444211 22333333333333344444443333333322 1223333333344444445555555554444331 1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHH
Q 010057 204 PDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVT 283 (519)
Q Consensus 204 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (519)
-+...+..+...+...|+++.|...++...+..+. ..
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~----------------------------------------- 203 (388)
T d1w3ba_ 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN--FL----------------------------------------- 203 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CH-----------------------------------------
T ss_pred chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc--cH-----------------------------------------
Confidence 23344445555555555555555555554442211 00
Q ss_pred hccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHH
Q 010057 284 TDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAY 363 (519)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (519)
..+..+...+...|++++|...+....... ..+...+..+...+...|++++|+..|++..+.. +-+...+
T Consensus 204 -------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 274 (388)
T d1w3ba_ 204 -------DAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAY 274 (388)
T ss_dssp -------HHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHH
T ss_pred -------HHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 001112222223333333333333332222 1233444555566666777777777777766654 2345556
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcC
Q 010057 364 LALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAG 442 (519)
Q Consensus 364 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g 442 (519)
..+...+...|++++|.+.+....... +.+...+..+...+...|++++|.+.|++..+..| +..+|..+..+|.+.|
T Consensus 275 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 353 (388)
T d1w3ba_ 275 CNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 667777777777777777777766543 44555666666667777777777777766555433 3456666677777777
Q ss_pred CHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCC
Q 010057 443 SADKALKIYKTMCRKGIHPS-LGTFNVLLAGLEKLGR 478 (519)
Q Consensus 443 ~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~ 478 (519)
++++|++.|++..+. .|+ ...|..+..+|.+.||
T Consensus 354 ~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 354 KLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 777777777776654 343 4456666666655553
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=8.4e-20 Score=169.24 Aligned_cols=366 Identities=11% Similarity=0.026 Sum_probs=294.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 010057 72 MLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR 151 (519)
Q Consensus 72 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 151 (519)
+...+.+.|++++|.+.++.+.+.... +...+..+...|.+.|++++|...|++..+... -+..+|..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcc
Confidence 345677889999999999999886432 678899999999999999999999999987642 257789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 152 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
+++|.+.+....+.. +.+..............+....+............ ................+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc-ccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHH
Confidence 999999999998864 33556666666666777777777777666665433 3445555666677788888888888887
Q ss_pred HHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHH
Q 010057 232 MKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDS 311 (519)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 311 (519)
....... .. .....+...+...++.+.|..
T Consensus 161 ~~~~~~~--~~------------------------------------------------~~~~~l~~~~~~~~~~~~A~~ 190 (388)
T d1w3ba_ 161 AIETQPN--FA------------------------------------------------VAWSNLGCVFNAQGEIWLAIH 190 (388)
T ss_dssp HHHHCTT--CH------------------------------------------------HHHHHHHHHHHTTTCHHHHHH
T ss_pred hhccCcc--hh------------------------------------------------HHHHhhcccccccCcHHHHHH
Confidence 7664432 11 122334556778889999999
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC
Q 010057 312 LLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH 391 (519)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (519)
.+........ -+...+..+...+...|++++|+..+....... +.+...+..+...+.+.|++++|...++...+..
T Consensus 191 ~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~- 267 (388)
T d1w3ba_ 191 HFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ- 267 (388)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 9988776542 245678888899999999999999999988765 3456778888999999999999999999998865
Q ss_pred CccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CcccHHHH
Q 010057 392 SLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP-SLGTFNVL 469 (519)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 469 (519)
+.+...+..+...+...|++++|.+.++..... +.+...+..+...+.+.|++++|++.|++..+. .| +..++..+
T Consensus 268 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 345 (388)
T d1w3ba_ 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNL 345 (388)
T ss_dssp SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 456678888999999999999999999987665 445778899999999999999999999999876 45 46678888
Q ss_pred HHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 470 LAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 470 ~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
..+|.+.|++++|...++++.+++|+.
T Consensus 346 a~~~~~~g~~~~A~~~~~~al~l~P~~ 372 (388)
T d1w3ba_ 346 ASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999998764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.8e-11 Score=109.39 Aligned_cols=224 Identities=10% Similarity=0.009 Sum_probs=119.9
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 010057 75 IFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKE 154 (519)
Q Consensus 75 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 154 (519)
.+.+.|++++|...|+...+.... +..+|..+..++...|++++|...|++..+.... +...|..+...|...|++++
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~ 105 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQ 105 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccccccc
Confidence 344555555555555555544322 3445555555555555555555555554443211 33444455555555555555
Q ss_pred HHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 010057 155 ATDVYKEMIQRGLPPNC----------------YTYTVLMEYLVRAGKYEEALEIFSKMQEAG-VQPDKAACNILIEKCC 217 (519)
Q Consensus 155 a~~~~~~m~~~g~~p~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~ 217 (519)
|.+.+++.... .|+. ......+..+...+.+.+|.+.|....... -.++..++..+...+.
T Consensus 106 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~ 183 (323)
T d1fcha_ 106 ACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183 (323)
T ss_dssp HHHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred cccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 55555554432 1110 011111222334445566666666655432 2234556666666777
Q ss_pred hcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHH
Q 010057 218 KAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLV 297 (519)
Q Consensus 218 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 297 (519)
..|++++|...++.......
T Consensus 184 ~~~~~~~A~~~~~~al~~~p------------------------------------------------------------ 203 (323)
T d1fcha_ 184 LSGEYDKAVDCFTAALSVRP------------------------------------------------------------ 203 (323)
T ss_dssp HTTCHHHHHHHHHHHHHHCT------------------------------------------------------------
T ss_pred HHHHHhhhhccccccccccc------------------------------------------------------------
Confidence 77777777777665544221
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcc
Q 010057 298 LILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFP 377 (519)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (519)
-+...+..+...|...|++++|++.|+...+.. +-+...|..+..+|.+.|+++
T Consensus 204 -------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 204 -------------------------NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp -------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred -------------------------ccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHH
Confidence 123445555666667777777777777766543 224455677777777777777
Q ss_pred hHHHHHHHHHh
Q 010057 378 KVAEIVEEMTK 388 (519)
Q Consensus 378 ~a~~~~~~~~~ 388 (519)
+|.+.|...++
T Consensus 258 ~A~~~~~~al~ 268 (323)
T d1fcha_ 258 EAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777665
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=6.9e-11 Score=105.46 Aligned_cols=193 Identities=11% Similarity=0.057 Sum_probs=149.7
Q ss_pred HHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010057 37 NQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD 116 (519)
Q Consensus 37 ~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 116 (519)
...+...|++++|+..|+.+.+.. +.+..+|..+...+...|++++|...|....+.... +...|..+...+...|+
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccc
Confidence 334445599999999999987543 456888999999999999999999999998876433 67888889999999999
Q ss_pred hhhHHHHHHHHHHCCCCCChh----------------hHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 010057 117 VDGAVNIWEEMKLKECYPTIV----------------SYTAYMKILFLNDRVKEATDVYKEMIQRG-LPPNCYTYTVLME 179 (519)
Q Consensus 117 ~~~a~~~~~~m~~~~~~p~~~----------------~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~ 179 (519)
+++|.+.+++..... |+.. .....+..+...+...+|.+.|.+..+.. -.++...+..+..
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 999999999987652 2211 11112233445567788888888877642 2346778888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
.+...|++++|...|+...... +-+..+|..+..+|.+.|++++|.+.|+...+.
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 235 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 235 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH
Confidence 9999999999999999988753 235678889999999999999999999887663
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=9.5e-09 Score=92.49 Aligned_cols=276 Identities=11% Similarity=0.009 Sum_probs=164.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHH
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQRGLPPN----CYTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQP-DKAACNIL 212 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l 212 (519)
....+...|++++|++++++..+.....+ ...++.+...|...|++++|...|++..+. +..+ ...++..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34456678888888888888776421111 235666777888888888888888877542 1111 12355566
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcc
Q 010057 213 IEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSI 292 (519)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (519)
...+...|++..+...+.........
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~------------------------------------------------------ 123 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINE------------------------------------------------------ 123 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHh------------------------------------------------------
Confidence 67778888888888887765431100
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCC----CCcCHHHHHHHHH
Q 010057 293 DQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMD----LNLERTAYLALIG 368 (519)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~ 368 (519)
............+..+...+...|+++.+...+....... .......+.....
T Consensus 124 -----------------------~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 124 -----------------------QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp -----------------------TTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred -----------------------cccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 0000000011223334445566667777776666655432 1122333455556
Q ss_pred HHHhcCCcchHHHHHHHHHhc----CCCc--cchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-----CchhHHHHHHH
Q 010057 369 ILIKLNTFPKVAEIVEEMTKA----GHSL--GVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-----CTATYTALIGV 437 (519)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~li~~ 437 (519)
.+...++...+...+...... +..+ ....+..+...+...|+.++|...++......+ ....+..+..+
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 260 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 260 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 666677777777766665431 1111 122344455567777888888888776655421 12345567778
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 438 YFSAGSADKALKIYKTMCRK----GIHPS-LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 438 ~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
|...|++++|.+.+++.... +..|+ ..++..+..+|.+.|++++|.+.+++..++.+
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 261 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 88888888888888876532 43443 34566677788888888888888887766543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=5.1e-08 Score=85.51 Aligned_cols=187 Identities=9% Similarity=0.075 Sum_probs=134.3
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc--------------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010057 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEA--------------KRISSMKYVFELMQEKGINIDAVTYTSVMHWL 111 (519)
Q Consensus 46 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 111 (519)
.+++..+|+++.... +.++..|-..+..+-.. +..+++..+|+...+...+-+...|...+...
T Consensus 32 ~~Rv~~vyerAl~~~--~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~ 109 (308)
T d2onda1 32 TKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 345666777776443 44556666555544322 34577888888888754455677888888888
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHH
Q 010057 112 SNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY-LVRAGKYEEA 190 (519)
Q Consensus 112 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~~a 190 (519)
.+.|+.+.|..+|+++...........|...+....+.|+.+.|.++|+...+.+. .+...|...... +...|+.+.|
T Consensus 110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccCHHHH
Confidence 89999999999999988764333345788888888899999999999999887642 244444443333 3346788999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 191 LEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 191 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
..+|+.+... .+.+...+...++...+.|+.+.|..+|++..+..
T Consensus 189 ~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 189 FKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 9999988875 33456788888888889999999999998876643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=1.4e-07 Score=84.46 Aligned_cols=275 Identities=11% Similarity=0.032 Sum_probs=172.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCC-ChhhH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINID----AVTYTSVMHWLSNAGDVDGAVNIWEEMKLK----ECYP-TIVSY 139 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~ 139 (519)
.......+...|++++|.++++...+.....+ ...+..+..++...|++++|...|++..+. +..+ ...++
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 33344556788889999988888776532211 235666778888889999999988887553 1111 12345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHH
Q 010057 140 TAYMKILFLNDRVKEATDVYKEMIQ----RGLPPN---CYTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQPDKAA 208 (519)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~ 208 (519)
..+...+...|++..+...+.+... .+..+. ...+..+...+...|+++.+...+...... +......+
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 6667778888999999888887654 111111 235556777888999999999999887653 22334456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCc--cCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhcc
Q 010057 209 CNILIEKCCKAGETRTIILILRYMKENRLA--LRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDI 286 (519)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (519)
+..+...+...+++..+...+......... ........
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~---------------------------------------- 214 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN---------------------------------------- 214 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH----------------------------------------
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHH----------------------------------------
Confidence 666777788889998888887765542111 11111000
Q ss_pred CCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHhccCChhhHHHHHHHHHhC----CCCcC
Q 010057 287 EGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQ---LDSAVISTIIEVNCDHRRRDGALLAFEYSVKM----DLNLE 359 (519)
Q Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 359 (519)
........+...++.+.+...+......... .....+..+..++...|++++|...++..... +..|+
T Consensus 215 -----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 289 (366)
T d1hz4a_ 215 -----ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 289 (366)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH
Confidence 1122334556667777777776665433221 12334455666777777888887777766532 33333
Q ss_pred -HHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 010057 360 -RTAYLALIGILIKLNTFPKVAEIVEEMTK 388 (519)
Q Consensus 360 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (519)
...+..+..++.+.|++++|.+.++...+
T Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 290 LNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23466667777777888777777777654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=4.6e-08 Score=85.85 Aligned_cols=189 Identities=8% Similarity=0.116 Sum_probs=151.2
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 123 (519)
+..++|..+|+...+. ..+.+...|...+..+.+.|+++.|..+|+.+.+........+|...+....+.|+.+.|.++
T Consensus 78 ~~~~~a~~i~~ral~~-~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 78 LFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred cchHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 3467889999988632 235567788999999999999999999999998865444456899999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Q 010057 124 WEEMKLKECYPTIVSYTAYMKI-LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG- 201 (519)
Q Consensus 124 ~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g- 201 (519)
|+...+.+.. +...|...... +...|+.+.|..+|+.+... .+.+...|...+..+.+.|+++.|..+|++.....
T Consensus 157 ~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 157 FKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 9999877432 34444444333 34568999999999999986 34567899999999999999999999999988753
Q ss_pred CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 202 VQPD--KAACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 202 ~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
..|+ ...|...+.--...|+.+.+.++++.+.+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3443 457888888888889999999999987663
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.7e-07 Score=82.21 Aligned_cols=151 Identities=7% Similarity=0.017 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 67 FTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAG-DVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 67 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
..|+.+-..+.+.+.+++|.++++.+.+.+.. +...|+....++...| ++++|+..++...+.... +..+|+.+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 34555656667777788888888888776443 5667777777766655 477888888777665322 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 221 (519)
+.+.|++++|++.++++.+.. +-+...|..+...+...|++++|++.++.+.+... -+...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~ 195 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTG 195 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccc
Confidence 777888888888888877753 23567777777778888888888888887777532 255566666555555444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=2.8e-08 Score=87.31 Aligned_cols=233 Identities=9% Similarity=-0.009 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 010057 172 YTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKA-ACNILIEKCCKAG-ETRTIILILRYMKENRLALRYPVFKEALQ 249 (519)
Q Consensus 172 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 249 (519)
..|+.+...+.+.+.+++|+++++.+.+ +.|+.. .|+....++...| ++++|+..++...+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~--lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p------------ 109 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP------------ 109 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH------------
Confidence 3556666667777777888888887777 457776 4455555666655 46777777776555332
Q ss_pred HHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHH
Q 010057 250 TFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVIS 329 (519)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (519)
-+..+|.
T Consensus 110 -------------------------------------------------------------------------~~~~a~~ 116 (315)
T d2h6fa1 110 -------------------------------------------------------------------------KNYQVWH 116 (315)
T ss_dssp -------------------------------------------------------------------------TCHHHHH
T ss_pred -------------------------------------------------------------------------hhhhHHH
Confidence 2567788
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCC
Q 010057 330 TIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSAR 409 (519)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 409 (519)
.....+...|++++|++.+..+.+.. +-+...|..+...+...|++++|.+.++.+++.+ +.+...|+.+...+.+.+
T Consensus 117 ~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~ 194 (315)
T d2h6fa1 117 HRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTT 194 (315)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHcc
Confidence 88888999999999999999999865 4467889999999999999999999999999876 345667777766666666
Q ss_pred C------cchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHh--cCCh
Q 010057 410 R------PVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP-SLGTFNVLLAGLEK--LGRV 479 (519)
Q Consensus 410 ~------~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~--~g~~ 479 (519)
. +++|.+.+....+. +.+...|+.+...+... ..+++.+.++...+....+ +...+..+...|.. .+..
T Consensus 195 ~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~ 273 (315)
T d2h6fa1 195 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 273 (315)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCH
Confidence 5 45677777766554 44677888777766544 4578888888887663222 23445566667644 3677
Q ss_pred hHHHHHHHHhcccCc
Q 010057 480 SDAEIYRKEKKSIQA 494 (519)
Q Consensus 480 ~~a~~~~~~~~~~~~ 494 (519)
+.+...+++..++..
T Consensus 274 ~~~~~~~~ka~~l~~ 288 (315)
T d2h6fa1 274 DNKEDILNKALELCE 288 (315)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888888766544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=3.2e-07 Score=78.06 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSL 463 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 463 (519)
.+|..+...|...|++++|++.|++.+.. .|+.
T Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 242 (259)
T d1xnfa_ 210 ETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 242 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCC
Confidence 45667788888888888888888888765 4543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.88 E-value=1.7e-08 Score=90.01 Aligned_cols=86 Identities=12% Similarity=0.080 Sum_probs=46.0
Q ss_pred HhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHH
Q 010057 371 IKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALK 449 (519)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 449 (519)
...+..+.+...+....... +++...+..+...+...++.++|...+.+.....| +...|..+..+|.+.|++++|++
T Consensus 219 ~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~ 297 (334)
T d1dcea1 219 FFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 297 (334)
T ss_dssp HHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH
T ss_pred HHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555555555555433 23333333344444455555566665555544333 34555666666666666666666
Q ss_pred HHHHHHHC
Q 010057 450 IYKTMCRK 457 (519)
Q Consensus 450 ~~~~m~~~ 457 (519)
.|++.++.
T Consensus 298 ~~~~ai~l 305 (334)
T d1dcea1 298 YFSTLKAV 305 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=1.5e-07 Score=80.19 Aligned_cols=96 Identities=13% Similarity=0.031 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 147 (519)
+|..+...|.+.|++++|.+.|+...+.... +..+|+.+..++.+.|++++|+..|++..+.... +..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 4445555566666666666666666554322 4555666666666666666666666665554211 3445555555556
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 010057 148 LNDRVKEATDVYKEMIQR 165 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~ 165 (519)
..|++++|.+.|+...+.
T Consensus 117 ~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh
Confidence 666666666666655553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.83 E-value=1.6e-08 Score=90.20 Aligned_cols=267 Identities=8% Similarity=-0.058 Sum_probs=159.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHH---HH-------HHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010057 78 EAKRISSMKYVFELMQEKGINIDAVTYTSVM---HW-------LSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147 (519)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li---~~-------~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 147 (519)
+.+..++|.++++...+.... +...|+..- .. +...|++++|+.+++...+... -+...|..+..++.
T Consensus 41 ~~~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~~~~~~~~~~~~ 118 (334)
T d1dcea1 41 AGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLS 118 (334)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHhhHHHH
Confidence 333457788888877765322 333443322 22 2233446778888888776532 25666766666666
Q ss_pred hcC--CHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010057 148 LND--RVKEATDVYKEMIQRGLPPNCYTYTV-LMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRT 224 (519)
Q Consensus 148 ~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 224 (519)
..+ ++++|...+++..+.. +++...+.. ....+...+.+++|+..++....... -+...|..+..++.+.|++++
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCC
T ss_pred HhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHH
Confidence 654 4788888888887752 334555543 44566677888888888888776542 366678888888888888776
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcC
Q 010057 225 IILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKK 304 (519)
Q Consensus 225 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (519)
|...++...+..
T Consensus 197 A~~~~~~~~~~~-------------------------------------------------------------------- 208 (334)
T d1dcea1 197 SGPQGRLPENVL-------------------------------------------------------------------- 208 (334)
T ss_dssp SSSCCSSCHHHH--------------------------------------------------------------------
T ss_pred HHHHHHHhHHhH--------------------------------------------------------------------
Confidence 644333211100
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHH
Q 010057 305 NLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVE 384 (519)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 384 (519)
. . .......+...+..+++...+....... +++...+..+...+...++..+|...+.
T Consensus 209 ---------~---------~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 266 (334)
T d1dcea1 209 ---------L---------K---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQ 266 (334)
T ss_dssp ---------H---------H---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------H---------H---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 0 0 0001111233445556666666665543 2333445555566666777777777777
Q ss_pred HHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHH
Q 010057 385 EMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYF 439 (519)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~ 439 (519)
...+.. +.+...+..+..+|...|+.++|.+.++.+.+..|+ ..-|+.|...+.
T Consensus 267 ~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 267 ELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 776554 335566677777788888888888888877766554 344555555444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.46 E-value=1.8e-05 Score=68.08 Aligned_cols=146 Identities=10% Similarity=0.062 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHH
Q 010057 151 RVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQPD-KAACNILIEKCCKAGETRTI 225 (519)
Q Consensus 151 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a 225 (519)
++++|.++|.+. ...|...+++++|.+.|.+..+. +-.++ ..+|..+..+|.+.|++++|
T Consensus 32 ~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A 96 (290)
T d1qqea_ 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (290)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456666665543 55688888999999998887542 22222 34788888999999999999
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCC
Q 010057 226 ILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKN 305 (519)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (519)
...++...+. +...++
T Consensus 97 ~~~~~~a~~~----------------------------------------------------------------~~~~~~ 112 (290)
T d1qqea_ 97 VDSLENAIQI----------------------------------------------------------------FTHRGQ 112 (290)
T ss_dssp HHHHHHHHHH----------------------------------------------------------------HHHTTC
T ss_pred HHHHHHhhHH----------------------------------------------------------------hhhccc
Confidence 9888765441 111122
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHH-hccCChhhHHHHHHHHHhC----CCCcC-HHHHHHHHHHHHhcCCcchH
Q 010057 306 LVAIDSLLSGIMDKSIQLDSAVISTIIEVN-CDHRRRDGALLAFEYSVKM----DLNLE-RTAYLALIGILIKLNTFPKV 379 (519)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 379 (519)
...+. ..+..+...| ...|++++|++.|+...+. +.++. ..++..+...+...|++++|
T Consensus 113 ~~~~~---------------~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A 177 (290)
T d1qqea_ 113 FRRGA---------------NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (290)
T ss_dssp HHHHH---------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred chhHH---------------HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHH
Confidence 22221 2233334444 3457888888888776542 21221 23477788888888999999
Q ss_pred HHHHHHHHhcC
Q 010057 380 AEIVEEMTKAG 390 (519)
Q Consensus 380 ~~~~~~~~~~~ 390 (519)
.+.|+.+....
T Consensus 178 ~~~~~~~~~~~ 188 (290)
T d1qqea_ 178 SDIYSKLIKSS 188 (290)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 99888887643
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=3e-07 Score=67.06 Aligned_cols=92 Identities=17% Similarity=0.041 Sum_probs=68.5
Q ss_pred HHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhH
Q 010057 403 HRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSD 481 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~ 481 (519)
..+.+.|++++|...|+++.+. +.+...|..+..+|...|++++|++.+++..+.+ +.++..|..+..++...|++++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHH
Confidence 4455666667777766665544 3456678888888888888888888888888774 4567777788888888888888
Q ss_pred HHHHHHHhcccCcc
Q 010057 482 AEIYRKEKKSIQAD 495 (519)
Q Consensus 482 a~~~~~~~~~~~~~ 495 (519)
|...+++..++.|+
T Consensus 90 A~~~~~~a~~~~p~ 103 (117)
T d1elwa_ 90 AKRTYEEGLKHEAN 103 (117)
T ss_dssp HHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhCCC
Confidence 88888888877665
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.1e-05 Score=64.32 Aligned_cols=138 Identities=13% Similarity=0.063 Sum_probs=81.0
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010057 110 WLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEE 189 (519)
Q Consensus 110 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 189 (519)
.+...|+++.|++.|.++ .+|+..+|..+..+|...|++++|++.|++.++.+ +-+...|..+..+|.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 344556666666665543 23455555566666666666666666666665542 2244556666666666666666
Q ss_pred HHHHHHHHHHc------------C--CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHh
Q 010057 190 ALEIFSKMQEA------------G--VQPD-KAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFK 252 (519)
Q Consensus 190 a~~~~~~m~~~------------g--~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 252 (519)
|.+.|+..... | ..++ ..++..+..++.+.|++++|.+.+....+....+....+..++..+.
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~ 166 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 66666655432 0 0111 23555666777888888888888887777666665666665555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.6e-05 Score=63.36 Aligned_cols=125 Identities=10% Similarity=0.063 Sum_probs=81.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 010057 74 DIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVK 153 (519)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 153 (519)
..+...|+++.|.+.|+.+. .|+..+|..+-.+|...|++++|++.|++..+.... +...|..+..++.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHH
Confidence 34456677777777776542 346666777777777777777777777777665322 4566777777777777777
Q ss_pred HHHHHHHHHHHCC------------C--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010057 154 EATDVYKEMIQRG------------L--PPN-CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQ 203 (519)
Q Consensus 154 ~a~~~~~~m~~~g------------~--~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 203 (519)
+|.+.|++..... . .++ ..++..+..++.+.|++++|.+.+....+....
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 7777777665421 0 111 245566777888888999998888887765433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.37 E-value=5.4e-07 Score=73.23 Aligned_cols=99 Identities=11% Similarity=-0.080 Sum_probs=86.0
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHH
Q 010057 358 LERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIG 436 (519)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~ 436 (519)
|+...+......+.+.|++++|+..|...++.. +.++..+..+..+|.+.|++++|...|+...+..| ++.+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 677778888899999999999999999998875 56777888899999999999999999998887655 4778899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 010057 437 VYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 437 ~~~~~g~~~~A~~~~~~m~~~ 457 (519)
+|.+.|++++|+..|++..+.
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999988765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=3.6e-06 Score=72.59 Aligned_cols=166 Identities=13% Similarity=0.024 Sum_probs=95.6
Q ss_pred HHHHHhccCChhhHHHHHHHHHhC----CCCcC-HHHHHHHHHHHHhcCCcchHHHHHHHHHhc----CC-CccchhHHH
Q 010057 331 IIEVNCDHRRRDGALLAFEYSVKM----DLNLE-RTAYLALIGILIKLNTFPKVAEIVEEMTKA----GH-SLGVYLGAL 400 (519)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 400 (519)
....|-..+++++|.+.|.++.+. +-+++ ..+|..+..+|.+.|++++|.+.+....+. |. ......+..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 345566677777777777766543 11111 234777777777777777777777766532 11 111233444
Q ss_pred HHHHHh-cCCCcchHHHHhhhCCcC---CCC----chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc------cH
Q 010057 401 LIHRLG-SARRPVPAAKIFSLLPED---QKC----TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLG------TF 466 (519)
Q Consensus 401 l~~~~~-~~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~ 466 (519)
+...|. ..|++++|.+.+++..+. ..+ ..+|..+...|...|++++|++.|++........... .+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 444553 457777777777655321 111 2356677777888888888888888776652111111 12
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 467 NVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 467 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
......+...|+++.|.+.+++..++.|..
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~ 232 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 233345566778888888888777776654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.28 E-value=1.5e-06 Score=70.53 Aligned_cols=116 Identities=9% Similarity=-0.093 Sum_probs=92.8
Q ss_pred ccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHH
Q 010057 323 LDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLI 402 (519)
Q Consensus 323 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 402 (519)
|+...+......|.+.|++++|+..|..+.+.. +-+...|..+..+|.+.|++++|+..|...++.. +-+...+..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 667777788899999999999999999998876 4567789999999999999999999999998764 34567888899
Q ss_pred HHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHh
Q 010057 403 HRLGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFS 440 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~ 440 (519)
.+|...|++++|...|+++.+..|+ ...+...+..+..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 9999999999999999987654232 2233334444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=2.9e-07 Score=67.27 Aligned_cols=92 Identities=15% Similarity=0.074 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCc---chHHHHhhhCCcCCCCc---hhHHHHHHHH
Q 010057 365 ALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRP---VPAAKIFSLLPEDQKCT---ATYTALIGVY 438 (519)
Q Consensus 365 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~---~~~~~li~~~ 438 (519)
.+++.+...+++++|.+.|+..++.+ +.++.+...+..++.+.++. ++|+++++.+....|++ .+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45555566666666666666666554 23444444444444443332 23444444443332211 1344444444
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 010057 439 FSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~ 457 (519)
.+.|++++|++.|+++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 4445555555554444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=4e-05 Score=55.26 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=41.2
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010057 110 WLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEE 189 (519)
Q Consensus 110 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 189 (519)
.+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|+..+....+.+ +.+...|..+..++...|++++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHH
Confidence 3444455555555555444432 1133444444445555555555555555544432 2244444445555555555555
Q ss_pred HHHHHHHHHH
Q 010057 190 ALEIFSKMQE 199 (519)
Q Consensus 190 a~~~~~~m~~ 199 (519)
|+..|+...+
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=6e-05 Score=57.94 Aligned_cols=89 Identities=12% Similarity=0.064 Sum_probs=43.6
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 010057 109 HWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYE 188 (519)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 188 (519)
..|.+.|++++|+..|++..+... -+...|..+..+|...|++++|.+.|+..++.. +-+..+|..+..++...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHH
Confidence 344455555555555555544421 134445555555555555555555555555432 123345555555555555555
Q ss_pred HHHHHHHHHHH
Q 010057 189 EALEIFSKMQE 199 (519)
Q Consensus 189 ~a~~~~~~m~~ 199 (519)
+|...+++...
T Consensus 96 eA~~~~~~a~~ 106 (159)
T d1a17a_ 96 AALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=6.8e-06 Score=59.75 Aligned_cols=99 Identities=13% Similarity=0.057 Sum_probs=75.8
Q ss_pred HHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-cccHHHHHHHH
Q 010057 399 ALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGS---ADKALKIYKTMCRKGIHPS-LGTFNVLLAGL 473 (519)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~ 473 (519)
..+++.+...+++++|++.|++.... +.++.++..+..++.+.++ +++|+++|+++...+..|+ ..++..+..+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34667777888899999999887765 4456788888888877554 4568999998887653343 23677788888
Q ss_pred HhcCChhHHHHHHHHhcccCcccc
Q 010057 474 EKLGRVSDAEIYRKEKKSIQADAL 497 (519)
Q Consensus 474 ~~~g~~~~a~~~~~~~~~~~~~~~ 497 (519)
.+.|++++|.++|+++.+++|+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~~~ 106 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQNN 106 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhhHHHHHHHHHHHHhCcCCH
Confidence 999999999999999988888654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=8e-05 Score=57.19 Aligned_cols=95 Identities=12% Similarity=-0.005 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 148 (519)
+......|.+.|++++|...|....+.... +...|..+..+|...|++++|...|+...+... -+..+|..+..++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHHH
Confidence 444555677778888888888887776533 667777777888888888888888888776632 245677777888888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 010057 149 NDRVKEATDVYKEMIQR 165 (519)
Q Consensus 149 ~~~~~~a~~~~~~m~~~ 165 (519)
.|++++|...+++....
T Consensus 91 ~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKV 107 (159)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 88888888888887775
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=0.003 Score=54.19 Aligned_cols=137 Identities=12% Similarity=0.103 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
.||..--..+...|-+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.... +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 45666666777778888888888888865542 5667777778888888877766441 56688888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 010057 143 MKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAG 220 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 220 (519)
...+.+.....-+ .+...+...++.....++..|-..|.+++...+++..... -.++...++-++..|++.+
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 8887777665443 2223334456666677888888888888888888876543 2456667778888887754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.99 E-value=4.6e-05 Score=54.41 Aligned_cols=88 Identities=9% Similarity=-0.028 Sum_probs=53.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 010057 73 LDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRV 152 (519)
Q Consensus 73 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 152 (519)
...+.+.|++++|...|+...+.... +...|..+..++.+.|++++|+..|++..+... .+..+|..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHCCCH
Confidence 34455566666666666666655332 456666666666666666666666666655421 2455666666666666666
Q ss_pred HHHHHHHHHH
Q 010057 153 KEATDVYKEM 162 (519)
Q Consensus 153 ~~a~~~~~~m 162 (519)
++|.+.|++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.97 E-value=3.7e-05 Score=54.94 Aligned_cols=89 Identities=11% Similarity=-0.048 Sum_probs=63.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 010057 107 VMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK 186 (519)
Q Consensus 107 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 186 (519)
+...+.+.|++++|+..|++....... +..+|..+..++.+.|++++|...|++..+.. +-+...+..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 445566777788888877777665322 56677777777777788888888777777652 2356677777777777778
Q ss_pred HHHHHHHHHHH
Q 010057 187 YEEALEIFSKM 197 (519)
Q Consensus 187 ~~~a~~~~~~m 197 (519)
+++|++.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877777764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=2e-05 Score=57.99 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=61.2
Q ss_pred HHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-------ccHHHHHHH
Q 010057 401 LIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSL-------GTFNVLLAG 472 (519)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~l~~~ 472 (519)
+...+.+.|++++|.+.|++..+. +.+..+|..+..+|.+.|++++|++.++++++.. +.+. .+|..+...
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHHHH
Confidence 344455556666666666555443 3346677888888888888888888888877642 1111 245556667
Q ss_pred HHhcCChhHHHHHHHHhcccCc
Q 010057 473 LEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 473 ~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
+...+++++|.+++++.....+
T Consensus 89 ~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCC
Confidence 7777888888888887765533
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.72 E-value=6.8e-05 Score=57.07 Aligned_cols=116 Identities=9% Similarity=-0.094 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhc
Q 010057 362 AYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSA 441 (519)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~ 441 (519)
.+..-...+.+.|++.+|...|...++.-..... ..+......... ....+|+.+..+|.+.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~--------------~~~~~~~~~~~~----~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE--------------WDDQILLDKKKN----IEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT--------------CCCHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhh--------------hhhHHHHHhhhh----HHHHHHhhHHHHHHHh
Confidence 3555667778889999999888888753210000 000000000000 1145778899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 442 GSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 442 g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
|++++|++.+++.++.. +.+..+|..+..++...|++++|...|++..++.|+.
T Consensus 81 ~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 134 (153)
T d2fbna1 81 KDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 134 (153)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred cccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999998874 4567899999999999999999999999999988753
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=0.00016 Score=56.01 Aligned_cols=75 Identities=8% Similarity=-0.131 Sum_probs=50.7
Q ss_pred hHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHH
Q 010057 397 LGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLAGL 473 (519)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~ 473 (519)
+++.+..+|.+.|++++|+..++......| ++.+|..+..+|...|++++|+..|++..+. .|+ ......+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 445566677777777777777776665433 5677888888888888888888888888776 343 33333333333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.0019 Score=49.64 Aligned_cols=78 Identities=17% Similarity=0.040 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 010057 137 VSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP-DKAACNILIEK 215 (519)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~ 215 (519)
.+|+.+..+|.+.|++++|+..++..+..+ +-++.+|..+..+|...|++++|...|+...+. .| +..+...+-.+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 356667778888889999998888888753 236778888888888889999999998888774 34 44444444444
Q ss_pred HH
Q 010057 216 CC 217 (519)
Q Consensus 216 ~~ 217 (519)
..
T Consensus 140 ~~ 141 (170)
T d1p5qa1 140 QQ 141 (170)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.63 E-value=0.00018 Score=56.10 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 010057 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ-----RGLPPNCYT 173 (519)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~ 173 (519)
...+..+..++.+.|++++|+..++++.+... -+...|..++.++.+.|+..+|++.|+++.. .|+.|+..+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 34556666667777777777777777666532 2566677777777777777777777766532 467776654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.00068 Score=49.43 Aligned_cols=93 Identities=12% Similarity=0.090 Sum_probs=46.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC-CC-----hhhHHHHHH
Q 010057 71 TMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECY-PT-----IVSYTAYMK 144 (519)
Q Consensus 71 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~-----~~~~~~li~ 144 (519)
.+...+.+.|++++|...|+...+.+.. +...|..+..+|.+.|++++|+..+++..+.... +. ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 3444555556666666666555554322 4555555555666666666666655555432100 00 123344444
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 010057 145 ILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 145 ~~~~~~~~~~a~~~~~~m~~ 164 (519)
.+...+++++|.+.|+....
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 44555555555555555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.59 E-value=0.0014 Score=50.84 Aligned_cols=72 Identities=14% Similarity=0.203 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 010057 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE-----AGVQPDKAA 208 (519)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~ 208 (519)
...+..+...+.+.|++++|...++.+.... +-+...|..++.+|.+.|+.++|++.|+++.. .|+.|+..+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 3456666777777777777777777777652 33666777777777777777777777777632 367776554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.57 E-value=0.0002 Score=55.49 Aligned_cols=64 Identities=9% Similarity=-0.021 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
.|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++.+.|++++|.+.|+++.++.|
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p 142 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 142 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 34444444444455555555554444432 22334444444444455555555555554444444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.57 E-value=0.015 Score=48.22 Aligned_cols=142 Identities=12% Similarity=0.075 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCChhhHH
Q 010057 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN----AGDVDGAVNIWEEMKLKECYPTIVSYT 140 (519)
Q Consensus 65 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~ 140 (519)
|+..+..|...+.+.+++++|.+.|+...+.| +...+..|-..|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34555566666667777777777777777665 44555555555554 456667777777666554 333333
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 010057 141 AYMKILFL----NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR----AGKYEEALEIFSKMQEAGVQPDKAACNIL 212 (519)
Q Consensus 141 ~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 212 (519)
.+...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+...... .+...+..|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 33333332 4566777777777666542 2222233333332 23455566666555543 244555555
Q ss_pred HHHHHh
Q 010057 213 IEKCCK 218 (519)
Q Consensus 213 i~~~~~ 218 (519)
...|..
T Consensus 149 ~~~~~~ 154 (265)
T d1ouva_ 149 GSLYDA 154 (265)
T ss_dssp HHHHHH
T ss_pred hhhhcc
Confidence 555543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.54 E-value=0.0025 Score=47.99 Aligned_cols=62 Identities=18% Similarity=0.013 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010057 138 SYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 200 (519)
+|+.+..+|.+.|++++|++.+++.++.+ +.+..+|..+..++...|++++|...|+...+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45556666666666666666666666542 235566666666666666666666666666653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.52 E-value=0.0013 Score=50.61 Aligned_cols=80 Identities=8% Similarity=-0.139 Sum_probs=53.7
Q ss_pred hHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHH
Q 010057 397 LGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLAGLE 474 (519)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~ 474 (519)
+++.+..+|.+.|++++|+..++..... +.+..+|..+..+|...|++++|++.|++..+. .|+ ......+-....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 4455667777888888888888776654 445677888888888888888888888888776 344 334443333334
Q ss_pred hcCC
Q 010057 475 KLGR 478 (519)
Q Consensus 475 ~~g~ 478 (519)
+.+.
T Consensus 144 ~~~~ 147 (168)
T d1kt1a1 144 KAKE 147 (168)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.32 E-value=0.0036 Score=48.03 Aligned_cols=64 Identities=17% Similarity=0.092 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010057 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 200 (519)
...|..+..++.+.|++++|+..+++.++.. +.+...|..+..+|.+.|++++|+..|+...+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3455666677777777777777777777653 235667777777777777777777777777764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.30 E-value=0.033 Score=46.02 Aligned_cols=95 Identities=12% Similarity=0.068 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010057 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL----NDRVKEATDVYKEMIQRGLPPNCYTYTV 176 (519)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 176 (519)
+..+..|-..+.+.+++++|++.|++..+.| +...+..|-..|.. ..+...|...++.....+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4455555556666677777777777766655 44455555555554 456666666666665543 3333333
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHcC
Q 010057 177 LMEYLVR----AGKYEEALEIFSKMQEAG 201 (519)
Q Consensus 177 li~~~~~----~~~~~~a~~~~~~m~~~g 201 (519)
|...+.. ..+.+.|...++...+.|
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cccccccccccchhhHHHHHHHhhhhhhh
Confidence 3333332 234555666666555543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.27 E-value=0.0022 Score=49.25 Aligned_cols=126 Identities=15% Similarity=0.042 Sum_probs=84.8
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhC---CCCcC-----------HHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccc
Q 010057 330 TIIEVNCDHRRRDGALLAFEYSVKM---DLNLE-----------RTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGV 395 (519)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (519)
.....+.+.|++.+|+..|...... ...++ ...|..+..+|.+.|++++|+..+...++.. +.+.
T Consensus 20 e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~ 98 (168)
T d1kt1a1 20 EKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANE 98 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchH
Confidence 3344566667777777777665432 11111 1336667778899999999999999999875 5677
Q ss_pred hhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHH-HHHHHHHHHHH
Q 010057 396 YLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSAD-KALKIYKTMCR 456 (519)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~ 456 (519)
..+..+..++...|++++|.+.|+.+....| +...+..+-....+.+... ...++|..|.+
T Consensus 99 ~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 99 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 7888889999999999999999998877655 4445555544444443332 34455555544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.27 E-value=0.00028 Score=58.84 Aligned_cols=50 Identities=12% Similarity=0.233 Sum_probs=22.2
Q ss_pred cCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 114 AGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 114 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 164 (519)
.|++++|+..+++..+... -|...+..+...++..|++++|.+.|+...+
T Consensus 9 ~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444444444321 1334444444444444444444444444444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.25 E-value=0.00027 Score=58.94 Aligned_cols=121 Identities=12% Similarity=0.070 Sum_probs=63.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHH
Q 010057 77 GEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a 155 (519)
.+.|++++|...++...+.... |...+..+...++..|++++|...|+...+. .|+ ...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence 3456666666666666665433 5566666666666666666666666666554 232 33333343444333344443
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 200 (519)
..-...-...+-+++...+......+...|+.++|.+++++..+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 332222111111222233344455566667777777777776553
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.15 E-value=0.0012 Score=49.18 Aligned_cols=30 Identities=13% Similarity=-0.044 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010057 118 DGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148 (519)
Q Consensus 118 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 148 (519)
++|+..|++..+... .+..+|..+..+|..
T Consensus 58 ~~Ai~~~~kAl~l~P-~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 58 QEAITKFEEALLIDP-KKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-hhhHHHhhHHHHHHH
Confidence 344455544444321 133444444444433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.13 E-value=0.061 Score=45.82 Aligned_cols=137 Identities=12% Similarity=0.057 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010057 98 NIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVL 177 (519)
Q Consensus 98 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 177 (519)
.||..-...+...|.+.|.++.|..+|..+ .-|..++..+.+.++++.|.+.+.... +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 356666667788888999999999999854 346778888899999999998876542 67799999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcC
Q 010057 178 MEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVAD 255 (519)
Q Consensus 178 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 255 (519)
...+........+ .+.......+......++..|-..|.++....+++..... -......+..++..+.+..
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 9999888776553 2223334557777788999999999999999999976543 2334555566666665543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=0.00039 Score=64.50 Aligned_cols=64 Identities=8% Similarity=-0.195 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 170 NCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 170 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
+...+..+...+.+.|+.++|...+...... .| ..++..+...+...|++++|...|.+..+..
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~ 182 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLV 182 (497)
T ss_dssp ------------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 3445555666666666766666666554431 11 2355566666777777777777777665543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.00079 Score=45.92 Aligned_cols=66 Identities=11% Similarity=0.058 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCC-cccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 431 YTALIGVYFSAGSADKALKIYKTMCRKG-----IHPS-LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 431 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~-~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
+-.+...+.+.|++++|+..|++..+.. ..++ ..++..+..++.+.|++++|...++++.+++|+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~ 79 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC
Confidence 3356777888888888888888776541 1111 3467778888888888888888888888887764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.02 E-value=0.0023 Score=47.66 Aligned_cols=112 Identities=12% Similarity=0.044 Sum_probs=67.1
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh----------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010057 115 GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL----------NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184 (519)
Q Consensus 115 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----------~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 184 (519)
+.+++|+..|+...+.. +.+..++..+..++.. .+.+++|...|++..+.+ +-+..+|..+..+|...
T Consensus 11 ~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHc
Confidence 34555555555554442 1133444444444332 344577888888888753 33667888888888765
Q ss_pred C-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 185 G-----------KYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 185 ~-----------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
| .+++|.+.|+...+ +.|+...|..-+..+ .+|.+++.++.+.|
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 4 35778888888776 457766665554444 35566666665554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.00 E-value=0.00058 Score=51.89 Aligned_cols=69 Identities=16% Similarity=0.094 Sum_probs=53.4
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-----cccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 428 TATYTALIGVYFSAGSADKALKIYKTMCRK-----GIHPS-----LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-----~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
..+|+.+..+|.+.|++++|++.+++.++. ...++ ...+..+..+|...|++++|...|++..++.|..
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 356888899999999999999999887753 11222 1246667789999999999999999999887653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.0011 Score=61.38 Aligned_cols=114 Identities=13% Similarity=-0.074 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHH
Q 010057 359 ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGV 437 (519)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 437 (519)
+...+..+...+.+.|+.+.|...+....+.. + ...+..+...+...|++++|...+++..+..| +..+|+.|...
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL 195 (497)
T ss_dssp ------------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 34456677777778888888877776665432 1 24566677788888888888888887776544 46788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 010057 438 YFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKL 476 (519)
Q Consensus 438 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~ 476 (519)
|...|+..+|+..|.+..... +|-+.++..|...+.+.
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence 888888888888888887764 55667777777766543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.70 E-value=0.023 Score=42.57 Aligned_cols=97 Identities=16% Similarity=0.151 Sum_probs=62.7
Q ss_pred hHHHH--HHHHHhcCCHHHHHHHHHHHHHCC-CCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 010057 138 SYTAY--MKILFLNDRVKEATDVYKEMIQRG-LPP----------NCYTYTVLMEYLVRAGKYEEALEIFSKMQEA---- 200 (519)
Q Consensus 138 ~~~~l--i~~~~~~~~~~~a~~~~~~m~~~g-~~p----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---- 200 (519)
+|..+ ...+.+.|++++|++.|++.++.. -.| ....|+.+..+|.+.|++++|.+.+++....
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 334455677777777777766421 011 1356777788888888888888887776532
Q ss_pred -CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 201 -GVQPD-----KAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 201 -g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
...++ ..++..+..+|...|++++|...|++..+
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 12566678889999999999999887665
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.057 Score=36.13 Aligned_cols=62 Identities=6% Similarity=-0.064 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCC-----CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 104 YTSVMHWLSNAGDVDGAVNIWEEMKLKE-----CYPT-IVSYTAYMKILFLNDRVKEATDVYKEMIQR 165 (519)
Q Consensus 104 ~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 165 (519)
+-.+...+.+.|++++|+..|++..+.. ..++ ..+++.+..++.+.|++++|.+.+++.++.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3344455555555555555555543320 0111 234555555555555555555555555553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.81 E-value=0.085 Score=36.46 Aligned_cols=117 Identities=13% Similarity=0.018 Sum_probs=70.3
Q ss_pred hhhccCChhHHHHHHHhCCCCCCHHHHHHHHhc-------------------------CCChHHHHHHHHHHhhcCCCCC
Q 010057 10 KILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKT-------------------------HPPMEKAWLFFNWVSRSRGFNH 64 (519)
Q Consensus 10 ~~~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~-------------------------~~~~~~A~~~~~~~~~~~~~~~ 64 (519)
.++-.|-.++-.++..+.--+.+...||.++.. |++.......+-.+ ..
T Consensus 11 k~ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~------n~ 84 (161)
T d1wy6a1 11 KFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN------NT 84 (161)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT------TC
T ss_pred HHHHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHh------cc
Confidence 455677888888888877222344555555542 24444444444333 23
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 010057 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECY 133 (519)
Q Consensus 65 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 133 (519)
+...++..+..+.+.|+-+...++++.+.+. -+|++...-.+..+|.+-|...++.+++.+..+.|++
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 3445566666677777777777777765553 3556666666777777777777777777777666643
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.53 E-value=0.25 Score=35.31 Aligned_cols=81 Identities=11% Similarity=0.065 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCC
Q 010057 150 DRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR----AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCK----AGE 221 (519)
Q Consensus 150 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~ 221 (519)
.+.++|.+.+++..+.| ++.....|-..|.. ..+.++|.++|+...+.| +......|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34555555555555443 33333344444433 234556666666555544 23333444444443 235
Q ss_pred hHHHHHHHHHHHHcC
Q 010057 222 TRTIILILRYMKENR 236 (519)
Q Consensus 222 ~~~a~~~~~~~~~~~ 236 (519)
.++|.++|+..-+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 555666665555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.23 E-value=0.32 Score=34.71 Aligned_cols=81 Identities=9% Similarity=-0.027 Sum_probs=46.1
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCC
Q 010057 115 GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL----NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR----AGK 186 (519)
Q Consensus 115 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~ 186 (519)
.+.++|...+++..+.| +...+..|-..|.. ..+.++|.++|+...+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 45556666666665554 34444444444433 345677777777766654 34445555555544 346
Q ss_pred HHHHHHHHHHHHHcC
Q 010057 187 YEEALEIFSKMQEAG 201 (519)
Q Consensus 187 ~~~a~~~~~~m~~~g 201 (519)
.++|.++|+...+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 667777777666655
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.93 E-value=0.029 Score=39.30 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=47.8
Q ss_pred chhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 428 TATYTALIGVYFSAG---SADKALKIYKTMCRKGIHPSL-GTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 428 ~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
+.+--...+++++.. +.++++.+|++..+.+ +.+. ..+-.+.-+|.+.|++++|.++++++.+++|+.
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 344455666666553 4567888888887653 2232 466677778888999999999999888888864
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.11 E-value=0.85 Score=31.43 Aligned_cols=119 Identities=10% Similarity=0.106 Sum_probs=51.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC-CCC----------------CChhhHHH
Q 010057 79 AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK-ECY----------------PTIVSYTA 141 (519)
Q Consensus 79 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~----------------p~~~~~~~ 141 (519)
.|..++..++..+..+. .+..-||-.|--....-+-+...++++.+-+. .+. .+..-++.
T Consensus 15 dG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~vdl 91 (161)
T d1wy6a1 15 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNK 91 (161)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHH
T ss_pred hhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHHHH
Confidence 45555555555555443 14444555554444444444444444444221 000 12223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG 201 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 201 (519)
.++...+.|+-+.-.++++++.+. -+|++.....+..+|.+.|...++.+++.+..+.|
T Consensus 92 ALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 92 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 444444444444444444443332 23344444444444444444444444444444443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.80 E-value=1.7 Score=28.30 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHH
Q 010057 82 ISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYM 143 (519)
Q Consensus 82 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 143 (519)
.=++.+-++.+......|++.+..+.+++|-|.+++..|.++|+-.+... .++...|..++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 33455566666666667777777777777777777777777777666442 22344555554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.72 E-value=3 Score=28.69 Aligned_cols=64 Identities=8% Similarity=-0.077 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHhcCC---hhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 100 DAVTYTSVMHWLSNAGD---VDGAVNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 100 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 164 (519)
+..+--....+++++.+ .++++.+|++..+.+ +.+ ...+-.|.-+|.+.|++++|.+.++.+++
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33443334444443322 334555555554432 111 12334444445555555555555555554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.70 E-value=2.8 Score=27.22 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 154 EATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 154 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
++.+-++.+....+.|++....+-+++|-+.+++..|.++|+.++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444455444455555545555555555444444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=83.61 E-value=13 Score=32.35 Aligned_cols=407 Identities=8% Similarity=-0.008 Sum_probs=211.1
Q ss_pred hhhhHHhhhccCChhHHHHHHHhCCCCCCHHHHH---HHHhcC--CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 010057 4 TISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVN---QVLKTH--PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGE 78 (519)
Q Consensus 4 ~~~~i~~~~~~~~~~~a~~~~~~~~~~p~~~~~~---~ll~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 78 (519)
....+...++.|++.++.++...+...| ...|. .+.... ...++...+++.. .+.+.....-...+..+.+
T Consensus 9 ~y~~a~~a~~~~~~~~~~~~~~~L~dyp-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~---p~~P~~~~lr~~~l~~L~~ 84 (450)
T d1qsaa1 9 RYAQIKQAWDNRQMDVVEQMMPGLKDYP-LYPYLEYRQITDDLMNQPAVTVTNFVRAN---PTLPPARTLQSRFVNELAR 84 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSGGGTTST-THHHHHHHHHHHTGGGCCHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHhhhcCCC-CHHHHHHHHHHhccccCCHHHHHHHHHHC---CCChhHHHHHHHHHHHHHh
Confidence 3455677889999999999999985333 33333 222222 3444454444432 1112222334455677788
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH--HHH
Q 010057 79 AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVK--EAT 156 (519)
Q Consensus 79 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--~a~ 156 (519)
.++++.....+ . ..+++...-.....+....|+.+.|...+..+=..|.. ....++.+...+.+.|.+. ...
T Consensus 85 ~~~w~~~~~~~---~--~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~~~lt~~~~~ 158 (450)
T d1qsaa1 85 REDWRGLLAFS---P--EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYL 158 (450)
T ss_dssp TTCHHHHHHHC---C--SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred ccCHHHHHHhc---c--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCCCCHHHHH
Confidence 88887655443 1 22345665566778888899998888877766544322 3344555555554443322 112
Q ss_pred HHHHHHHHCC-----------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCh
Q 010057 157 DVYKEMIQRG-----------LPPN-CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCK--AGET 222 (519)
Q Consensus 157 ~~~~~m~~~g-----------~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~~ 222 (519)
+-+..+...| ++++ .......+..... ...+... ... ..++......+..++.+ ..+.
T Consensus 159 ~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~---~~~--~~~~~~~~~~~~~~l~rla~~d~ 230 (450)
T d1qsaa1 159 ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTF---ART--TGATDFTRQMAAVAFASVARQDA 230 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHH---HHH--SCCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHH---Hhc--CCCChhhhHHHHHHHHHHhccCh
Confidence 2222222221 1111 1122222222211 1111111 111 12233333333333333 2466
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHh
Q 010057 223 RTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLK 302 (519)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (519)
+.+..++.......... ......... .+......
T Consensus 231 ~~a~~~l~~~~~~~~~~-~~~~~~~~~---------------------------------------------~~a~~~~~ 264 (450)
T d1qsaa1 231 ENARLMIPSLAQAQQLN-EDQIQELRD---------------------------------------------IVAWRLMG 264 (450)
T ss_dssp HHHHHHHHHHHHHTTCC-HHHHHHHHH---------------------------------------------HHHHTSCS
T ss_pred hHHHHHHHhhhhccccc-HHHHHHHHH---------------------------------------------HHHHHHHH
Confidence 66776666655433221 111111100 01111112
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHH
Q 010057 303 KKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEI 382 (519)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 382 (519)
.+....+...+........ +.....-.+......+++..+...+..+.... .-...-.--+..++...|+.+.|...
T Consensus 265 ~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp TTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHH
Confidence 3334445555555444433 33333344555566789999998888764321 22233456777889999999999999
Q ss_pred HHHHHhcCCCccchhHHHHHHHHhcCCCc-chHHHHhhhCCcCCCCc----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 383 VEEMTKAGHSLGVYLGALLIHRLGSARRP-VPAAKIFSLLPEDQKCT----ATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
|...... ++ .|..|... +.|.. .-. ....+. .+.. ..-...+..+...|....|...|..+...
T Consensus 342 ~~~~a~~---~~--fYG~LAa~--~Lg~~~~~~---~~~~~~-~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~ 410 (450)
T d1qsaa1 342 LHQLMQQ---RG--FYPMVAAQ--RIGEEYELK---IDKAPQ-NVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (450)
T ss_dssp HHHHHTS---CS--HHHHHHHH--HTTCCCCCC---CCCCCS-CCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcC---CC--hHHHHHHH--HcCCCCCCC---cCCCCc-cHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC
Confidence 9998642 33 44444332 22221 100 000010 1110 01123466778899999999999888754
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 458 GIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 458 g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
.+......+.....+.|.++.|.....+...
T Consensus 411 ---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~~ 441 (450)
T d1qsaa1 411 ---KSKTEQAQLARYAFNNQWWDLSVQATIAGKL 441 (450)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred ---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHc
Confidence 2455667778888999999999988877643
|