Citrus Sinensis ID: 010086

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
Protein Sequence
MMEPTVGKPSFLRNILVRVLLFSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVTIGAGTGASGITANKAVRSNIVSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKESDLILGHRENLPDGNVANKCSVPGYKQAFVRKAEPLIMEEPLKPWITMKRNIKNIKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKVKKKVKLLPYAAWVRNETLSFQINHDPDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLVHQWW
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHccccccccccHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHccccccccccccccccEEEccccccccccccEEEEEEccccccccccHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHcccccEEEEEEccccccccHHHHHEEEcccccccccccccccccccccccccccccHHHHHHccccccccccccHHHccccccccccccccccccccccEEEEEEcccccccccccccccccccccccEEEEEEccccccHHHHHHccccEEEEcEEEEccccEEEEEEcccccccEEccccccccccccccccccccccccccccccHHHHHHHccccccEEEEEEccccHHHHHHHHHHHcccccEEEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHEEEEHEEEEEEcccccccccEEEEcccccccEEEccccccccccccccccccccccccHcHHcccHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHcccccEEEcccccccccEEEccccccccccccEEEEEEccHHHHHcccHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHccccEEEEEEEccccccccccEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHccccccccEEEEEccccccccccHHHHHHHccccccEEEEEEEEccHHHHHHHHcccccEEEEcccccccccEEEEEEccccccccccccccccEccccccccccccccccccccccHHHHHHHcccHccEEEEEEcccccHHHHHHHHHHcccEEEEEEEEEEEcccccccccccccccHcccHHHHHHHHHHHHHHccEEEEEcc
Coil and Loop (DISEMBL)
mmeptvgkpsfLRNILVRVLLFSVLIIVVRFAYVVTIAgescnlgdfcffslpdnfnlvtigagtgasgitankavrsnivspsrrdmytskeWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKeigvedsigifkksskplvisgeghripfdgntfdfVFVGgarlekaskplDFASEIVRTLKPEGFAVVHVrakdeysfnSFLDLFnscklvksrdidgidsslPYIREIVLKKESdlilghrenlpdgnvankcsvpgykqafvrkaeplimeeplkpwitmkrniknikylpsmadisfknrYVYVDVGArsygssigswfkkqypkqnktFDVYAIEADKTFHEEYKVKKKVKLLPYAAWVRNEtlsfqinhdpdkevvvkgrgmgriqpvqslsdggfdgevdriqgfdfadwlkntvtdkDFVVMKMDvegtefdliprlfetgaicliDEIFLEChynrwqrccpgqrspkykkTYEQCLELFTSLRQNgvlvhqww
Flexible Loop (DISEMBL)
mmeptvgkpsflRNILVRVLLFSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVTIGAGtgasgitankavrsnivspsrrdmytskEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKESDLILGHrenlpdgnvankcSVPGYKQAfvrkaeplimeeplkpwiTMKRNIKNIKYLPSMADISFKNRYVYVDVGARSYGssigswfkkqypkqNKTFDVYAIEADKTfheeykvkkkvKLLPYAAWVRNetlsfqinhdpdKEVVVKGRGMGRIQpvqslsdggfDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLVHQWW
Low Complexity Region (SEG)
MMEPTVGKPSFLRNILVRVLLFSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVtigagtgasgitaNKAVRSNIVSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKESDLILGHRENLPDGNVANKCSVPGYKQAFVRKAEPLIMEEPLKPWITMKRNIKNIKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYkvkkkvkllPYAAWVRNETLSFQINHDPDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLVHQWW
Disordered region (IsUnstruct)
*********SFLRNILVRVLLFSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVTIGAGTGASGITANKAVRSNIVSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKESDLILGHRENLPDGNVANKCSVPGYKQAFVRKAEPLIMEEPLKPWITMKRNIKNIKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKVKKKVKLLPYAAWVRNETLSFQINHDPDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLVHQW*
Disordered Region (DISOPRED)
************RNILVRVLLFSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVTIGAGTGASGITANKA******S*SRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLK**************************Y***FVR****************MKRNIKNIKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKVKKKVKLLPYAAWVRNETLSFQINHDPDKEVVV**********************VDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYNRW**************TYEQCLELFTSLRQNGVLVHQWW
Disordered Region (DISEMBL)
MMEPTVGKPSFLRNILVRVLLFSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVTIGAGTGASGITANKAVRSNIVSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKESDLILGHRENLPDGNVANKCSVPGYKQAFVRKAEPLIMEEPLKPWITMKRNIKNIKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKVKKKVKLLPYAAWVRNETLSFQINHDPDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLVHQWW
Disordered Region (DISPRO)
*******KPSFLRNILVRVLLFSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVTIGAGTGASGITANKAVRSNIVSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKESD*************VANKCSVPGYKQAFVRKAEPLIMEEPLKPWITMKRNIKNIKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKVKKKVKLLPYAAWVRNETLSFQINHDPDK****************SLSD**FDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLVHQWW
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMEPTVGKPSFLRNILVRVLLFSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVTIGAGTGASGITANKAVRSNIVSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKESDLILGHRENLPDGNVANKCSVPGYKQAFVRKAEPLIMEEPLKPWITMKRNIKNIKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKVKKKVKLLPYAAWVRNETLSFQINHDPDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLVHQWW
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	518
224140531	514	predicted protein [Populus trichocarpa]	0.986	0.994	0.751	0.0
297806037	513	hypothetical protein ARALYDRAFT_486898 [	0.986	0.996	0.728	0.0
224091064	515	predicted protein [Populus trichocarpa]	0.986	0.992	0.737	0.0
15241038	513	methyltransferase [Arabidopsis thaliana]	0.986	0.996	0.724	0.0
225439570	513	PREDICTED: uncharacterized protein LOC10	0.988	0.998	0.733	0.0
255571499	488	conserved hypothetical protein [Ricinus	0.932	0.989	0.703	0.0
449530574	520	PREDICTED: uncharacterized LOC101209474	0.953	0.95	0.707	0.0
449461745	520	PREDICTED: uncharacterized protein LOC10	0.953	0.95	0.707	0.0
449439831	508	PREDICTED: uncharacterized protein LOC10	0.957	0.976	0.682	0.0
449483577	508	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.957	0.976	0.682	0.0

>gi|224140531|ref|XP_002323636.1| predicted protein [Populus trichocarpa] gi|222868266|gb|EEF05397.1| predicted protein [Populus trichocarpa]

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/520 (75%), Positives = 439/520 (84%), Gaps = 9/520 (1%)

Query: 2   MEPTVGKPSFLRNILVRVLLFSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVTI 61
           MEPT GKP+FLRNILV+VLLF VLII+VRFAY+VT  GESCNLGDFCF  LPDNFN V  
Sbjct: 1   MEPTAGKPNFLRNILVKVLLFGVLIIIVRFAYIVTTTGESCNLGDFCF--LPDNFNFVIA 58

Query: 62  GAGTGASGITANKAVRSNIVSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSL 121
           G GTG S  T+NKAV S     S+ D+Y SK+WIKAV+FYS VF DL+S+GY+S  +K+L
Sbjct: 59  GTGTGVS--TSNKAVESTSAGTSQSDLYRSKDWIKAVHFYSDVFHDLVSDGYMSAISKTL 116

Query: 122 CVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEK 181
           CVET  G DV ALKEIG+ DSIGI+KK+SKPLVIS + +R+PFD NTFDF+F GG RL+K
Sbjct: 117 CVETPRGDDVLALKEIGILDSIGIYKKASKPLVISSKENRLPFDENTFDFIFSGGDRLDK 176

Query: 182 -ASKPLDFA-SEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSL 239
            A +PLD   SEI RTLKPEGF V HV AKD YSFNSFLDLFNSCKL+KSRDI+G DSS+
Sbjct: 177 TAQRPLDLTVSEIQRTLKPEGFFVAHVSAKDTYSFNSFLDLFNSCKLIKSRDIEGYDSSM 236

Query: 240 PYIREIVLKKESDLILGHRENLPDGNVANKCSVPGYKQAFVRKAEPLIMEEPLKPWITMK 299
           P IREIVL+K+    +  +++  DGN  N CSVPGYK+  VR AE LIMEEPLKPWIT+K
Sbjct: 237 PLIREIVLQKKVGSEIVSKDS--DGNSRNSCSVPGYKRDLVRNAETLIMEEPLKPWITLK 294

Query: 300 RNIKNIKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKT 359
           RNI NIKYL +MADISFK+RYVYVDVGARSYGSSIGSWFKKQYPKQN+TFDVYAIEADK 
Sbjct: 295 RNIMNIKYLTAMADISFKSRYVYVDVGARSYGSSIGSWFKKQYPKQNRTFDVYAIEADKA 354

Query: 360 FHEEYKVKKKVKLLPYAAWVRNETLSFQINHDPDKEVVVKGRGMGRIQPVQ-SLSDGGFD 418
           F+EEY+VKK V LLPYAAWVRNETL F+INHDP KEV  K RGMGRIQPV+ SLS   F+
Sbjct: 355 FYEEYRVKKGVTLLPYAAWVRNETLRFEINHDPGKEVKEKTRGMGRIQPVKSSLSSRSFN 414

Query: 419 GEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHY 478
           GEV+ I+GFDFA+WLKNTVT+KDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHY
Sbjct: 415 GEVNEIEGFDFAEWLKNTVTEKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHY 474

Query: 479 NRWQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLVHQWW 518
           NRWQRCCPGQRS KY+KTY QCL+LFTSLR  GVLVHQWW
Sbjct: 475 NRWQRCCPGQRSSKYEKTYGQCLDLFTSLRDRGVLVHQWW 514

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806037|ref|XP_002870902.1| hypothetical protein ARALYDRAFT_486898 [Arabidopsis lyrata subsp. lyrata] gi|297316739|gb|EFH47161.1| hypothetical protein ARALYDRAFT_486898 [Arabidopsis lyrata subsp. lyrata]

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/519 (72%), Positives = 430/519 (82%), Gaps = 8/519 (1%)

Query: 2   MEPTVGKPSFLRNILVRVLLFSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVTI 61
           ME ++ KPSFLRNI+VRVLLF VLIIVVRFAYVVTI GESCN GDFCFFSLP+N N V  
Sbjct: 1   METSMVKPSFLRNIMVRVLLFGVLIIVVRFAYVVTITGESCNRGDFCFFSLPENLNFVIS 60

Query: 62  GAGTGASGITANKAVRSNIVSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSL 121
           GAG+GAS I A   +RS   SP   D+YTS++WIKAV FYSS+FQDLI++GYLS  +K+L
Sbjct: 61  GAGSGASAIDA---IRS--TSPGD-DLYTSRDWIKAVQFYSSIFQDLIADGYLSPDSKTL 114

Query: 122 CVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEK 181
           CVET  GQ+V +L+EIGV++S+GI KK+ +PLV+ GEGH IPF+ N FDFVF GG RL K
Sbjct: 115 CVETAIGQEVHSLREIGVKNSVGISKKAFRPLVVRGEGHAIPFEDNAFDFVFSGGGRLGK 174

Query: 182 ASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPY 241
           + K L+FA EI RTLKP+GFAVVHV A D YSFNSFLDLFNSC+LVK RDIDG DSS+P+
Sbjct: 175 SLKQLEFADEITRTLKPQGFAVVHVGATDTYSFNSFLDLFNSCRLVKMRDIDGFDSSMPH 234

Query: 242 IREIVLKKESDLILGHRENLPDGNVANKCSVPGYKQAFVRKAEPLIMEEPLKPWITMKRN 301
           IRE V++K S++   H       +   KC +PGYK+  +R AEPLI EEPLKPWIT+KRN
Sbjct: 235 IREFVIQKYSEIDGHHHRKNSGDDSGGKCWIPGYKRDLIRDAEPLIQEEPLKPWITLKRN 294

Query: 302 IKNIKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFH 361
           IKNIKY+PSM DI FK+RYVYVDVGARSYGSSIGSWFKK+YPKQNKTFDV+AIEADK FH
Sbjct: 295 IKNIKYVPSMVDIRFKSRYVYVDVGARSYGSSIGSWFKKEYPKQNKTFDVFAIEADKAFH 354

Query: 362 EEYKVKKKVKLLPYAAWVRNETLSFQINHDPDK--EVVVKGRGMGRIQPVQSLSDGGFDG 419
           EEYK+KKKV LLPYAAWVRNETLSF+INHDP K  E   KGRGMGRIQPV+  S     G
Sbjct: 355 EEYKIKKKVNLLPYAAWVRNETLSFEINHDPGKEAEAKAKGRGMGRIQPVKKSSSSDLAG 414

Query: 420 EVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYN 479
           EV+ IQGFDFADWLK +V ++DFVVMKMDVEGTEFDLIPRL +TGAICLIDE+FLECHYN
Sbjct: 415 EVNLIQGFDFADWLKKSVRERDFVVMKMDVEGTEFDLIPRLIKTGAICLIDELFLECHYN 474

Query: 480 RWQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLVHQWW 518
           RWQRCCPGQRS KY KTY QCLELFTSLRQ GVLVHQWW
Sbjct: 475 RWQRCCPGQRSQKYNKTYNQCLELFTSLRQRGVLVHQWW 513

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091064|ref|XP_002309166.1| predicted protein [Populus trichocarpa] gi|222855142|gb|EEE92689.1| predicted protein [Populus trichocarpa]

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/521 (73%), Positives = 437/521 (83%), Gaps = 10/521 (1%)

Query: 2   MEPTVGKPSFLRNILVRVLLFSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVTI 61
           MEPTVGKP+FL NILV+VLLF VLII+VRFAYVVTI GESCNLG FCF  LP+N N V  
Sbjct: 1   MEPTVGKPNFLSNILVKVLLFGVLIIIVRFAYVVTITGESCNLGGFCF--LPENLNFVIA 58

Query: 62  GAGTGASGITANKAVRSNIVSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSL 121
           G GTG S  TAN+AV S    PS+  +Y SK+WIKAV+FYS +F DL+SEGYLS  +K+L
Sbjct: 59  GTGTGFS--TANRAVESTSAGPSQPYLYASKDWIKAVHFYSDIFHDLVSEGYLSAISKTL 116

Query: 122 CVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEK 181
           CVET  G+DVFALKEIG+ DSIGI++K+SKPLVIS   +  PFD N+ DF+F GG RL+K
Sbjct: 117 CVETPNGEDVFALKEIGILDSIGIYQKASKPLVISTNENGWPFDENSLDFIFSGGDRLDK 176

Query: 182 AS--KPLDFA-SEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSS 238
           AS  +PLD   SEI RTLKPEGF V HV AKD YS NSFLDLFNSCKL+KS DI+G +SS
Sbjct: 177 ASQKRPLDLTVSEIQRTLKPEGFFVAHVSAKDNYSLNSFLDLFNSCKLIKSLDIEGYNSS 236

Query: 239 LPYIREIVLKKESDLILGHRENLPDGNVANKCSVPGYKQAFVRKAEPLIMEEPLKPWITM 298
           LP+IREIVL+K+    +  +++  DGN  N CSVPGYK+  VR AE LI EEPLKPWIT+
Sbjct: 237 LPFIREIVLQKKGGSEILSKDS--DGNSENTCSVPGYKRDLVRNAESLIKEEPLKPWITL 294

Query: 299 KRNIKNIKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADK 358
           KRNIKNIK+LP+MADISFK RYVYVDVGARSYGSSIGSWFKKQYPKQN+TFDVYAIEADK
Sbjct: 295 KRNIKNIKHLPAMADISFKRRYVYVDVGARSYGSSIGSWFKKQYPKQNRTFDVYAIEADK 354

Query: 359 TFHEEYKVKKKVKLLPYAAWVRNETLSFQINHDPDKEVVVKGRGMGRIQPVQS-LSDGGF 417
            F+EEY+VKK VKLLPYAAWVRNETL F+INHDP K+V  + RGMGRIQPV+S  S G F
Sbjct: 355 AFYEEYRVKKGVKLLPYAAWVRNETLRFEINHDPGKKVKDRTRGMGRIQPVKSDSSSGSF 414

Query: 418 DGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECH 477
           +GEV+ I+GFDFA+WLK+TVT+KDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECH
Sbjct: 415 NGEVNEIEGFDFAEWLKSTVTEKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECH 474

Query: 478 YNRWQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLVHQWW 518
           Y+RWQRCCPGQRS KY+KTY QCL+LFTSLR  GVLVHQWW
Sbjct: 475 YSRWQRCCPGQRSSKYEKTYGQCLDLFTSLRDRGVLVHQWW 515

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241038|ref|NP_195791.1| methyltransferase [Arabidopsis thaliana] gi|7327830|emb|CAB82287.1| putative protein [Arabidopsis thaliana] gi|15810369|gb|AAL07072.1| unknown protein [Arabidopsis thaliana] gi|23296924|gb|AAN13203.1| unknown protein [Arabidopsis thaliana] gi|24417484|gb|AAN60352.1| unknown [Arabidopsis thaliana] gi|332002997|gb|AED90380.1| methyltransferase [Arabidopsis thaliana]

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/519 (72%), Positives = 431/519 (83%), Gaps = 8/519 (1%)

Query: 2   MEPTVGKPSFLRNILVRVLLFSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVTI 61
           ME ++GKPSFLRNI+VRVLLF VLIIVVRFAYVVTI GESCN GDFCFFSLP+N N V  
Sbjct: 1   METSMGKPSFLRNIMVRVLLFGVLIIVVRFAYVVTITGESCNRGDFCFFSLPENLNFVIS 60

Query: 62  GAGTGASGITANKAVRSNIVSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSL 121
           GA +G+S I    A+RS   SP   D+YT+++WIK+V FYSS+FQDLI++GYLS  +K+L
Sbjct: 61  GAASGSSAI---DAIRST--SPGD-DLYTTRDWIKSVQFYSSIFQDLIADGYLSPESKTL 114

Query: 122 CVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEK 181
           CVET  GQ+V +L+EIGV++S+GI KK+S+PLV+ GEGH IPF+ N FDFVF GG RL K
Sbjct: 115 CVETAIGQEVHSLREIGVKNSVGISKKASRPLVVRGEGHAIPFEDNAFDFVFSGGDRLGK 174

Query: 182 ASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPY 241
           + K L+FA EI RTLKPEGFAVVHV A D YSFNSFLDLFNSC+LVK RDIDG D S+P+
Sbjct: 175 SLKQLEFADEITRTLKPEGFAVVHVGATDTYSFNSFLDLFNSCRLVKMRDIDGFDPSMPH 234

Query: 242 IREIVLKKESDLILGHRENLPDGNVANKCSVPGYKQAFVRKAEPLIMEEPLKPWITMKRN 301
           IRE V++K S++  G   +   G+   KC +PGYK+  +R AEPLI EEPLKPWIT+KRN
Sbjct: 235 IREFVIQKYSEIDGGGHHHRGGGDSGGKCWIPGYKRDLIRDAEPLIQEEPLKPWITLKRN 294

Query: 302 IKNIKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFH 361
           IKNIKY+PSM DI FK+RYVYVDVGARSYGSSIGSWFKK+YPKQNKTFDV+AIEADK FH
Sbjct: 295 IKNIKYVPSMVDIRFKSRYVYVDVGARSYGSSIGSWFKKEYPKQNKTFDVFAIEADKAFH 354

Query: 362 EEYKVKKKVKLLPYAAWVRNETLSFQINHDPDKEV--VVKGRGMGRIQPVQSLSDGGFDG 419
           EEYK+KKKV LLPYAAWVRNETLSF+INHDP KEV    KGRGMGRIQPV+        G
Sbjct: 355 EEYKIKKKVNLLPYAAWVRNETLSFEINHDPGKEVEAKAKGRGMGRIQPVKKSDSSDLAG 414

Query: 420 EVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYN 479
           EV+ IQGFDFADWLK +V ++DFVVMKMDVEGTEFDLIPRL +TGAICLIDE+FLECHYN
Sbjct: 415 EVNLIQGFDFADWLKKSVRERDFVVMKMDVEGTEFDLIPRLIKTGAICLIDELFLECHYN 474

Query: 480 RWQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLVHQWW 518
           RWQRCCPGQRS KY KTY QCLELF SLRQ GVLVHQWW
Sbjct: 475 RWQRCCPGQRSQKYNKTYNQCLELFNSLRQRGVLVHQWW 513

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439570|ref|XP_002264939.1| PREDICTED: uncharacterized protein LOC100263765 [Vitis vinifera]

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/518 (73%), Positives = 436/518 (84%), Gaps = 6/518 (1%)

Query: 2   MEPTVGKPSFLRNILVRVLLFSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVTI 61
           MEP+ GKPSF+RN++VRVLLF VL++ VRFAYVVTI GESC+LGDFCFFSLP++FNL   
Sbjct: 1   MEPSAGKPSFMRNMMVRVLLFGVLVVGVRFAYVVTIRGESCDLGDFCFFSLPESFNLP-- 58

Query: 62  GAG-TGASGITANKAVRSNIVSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKS 120
           GAG  GAS I    A RS   +PSR D++TSK W KAV FYSSVFQDLI +GYL+ ++KS
Sbjct: 59  GAGKIGASAIVVKDAARSTFAAPSRVDLWTSKGWRKAVQFYSSVFQDLIVDGYLTPNSKS 118

Query: 121 LCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLE 180
           LCVET  GQDVFAL+EIGV D+IG  KK S PLV+S    R PFD +TFDFVF GG   +
Sbjct: 119 LCVETSAGQDVFALREIGVVDAIGTAKKKSPPLVVSALPSRQPFDDDTFDFVFSGGGAFD 178

Query: 181 KASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLP 240
           K  +PLDFASEI RTLKPEGF VVH + KDEYSFNSF+DLFN CK+VK+R++DG+DSS+P
Sbjct: 179 KVMRPLDFASEIARTLKPEGFLVVHTKTKDEYSFNSFVDLFNCCKVVKTRELDGMDSSMP 238

Query: 241 YIREIVLKKESDLILGHRENLPDGNVANKCSVPGYKQAFVRKAEPLIMEEPLKPWITMKR 300
           YIREIVLKKE   IL H       N  NKCSVPG+K+   RKAEPLI EEPLKPWIT+KR
Sbjct: 239 YIREIVLKKEPG-ILSHGTPKSHSNSVNKCSVPGHKKELFRKAEPLIPEEPLKPWITLKR 297

Query: 301 NIKNIKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTF 360
           NIKNIKYLPSMADISFK RYVY+DVGARSYGSSIGSWF+KQYPKQNKTF+VYAIEADKTF
Sbjct: 298 NIKNIKYLPSMADISFKQRYVYIDVGARSYGSSIGSWFRKQYPKQNKTFEVYAIEADKTF 357

Query: 361 HEEYKVKKKVKLLPYAAWVRNETLSFQINHDPDKEVVVKGRGMGRIQPVQSLSDGGFDGE 420
           H+EYK+KK+V LLPYAAWVRNETLSF+IN DP  + V KGRGMGRIQP QS +    D  
Sbjct: 358 HDEYKLKKRVTLLPYAAWVRNETLSFEINQDPGHKDVEKGRGMGRIQPGQSSASS--DAV 415

Query: 421 VDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYNR 480
           VD+I+GFDFA+WLKN+V+++DFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYNR
Sbjct: 416 VDQIEGFDFANWLKNSVSERDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYNR 475

Query: 481 WQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLVHQWW 518
           WQRCCPG+RS KY+KTY+QCL+LF++LR +GVLVHQWW
Sbjct: 476 WQRCCPGERSSKYQKTYDQCLDLFSNLRNSGVLVHQWW 513

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571499|ref|XP_002526697.1| conserved hypothetical protein [Ricinus communis] gi|223533997|gb|EEF35719.1| conserved hypothetical protein [Ricinus communis]

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/522 (70%), Positives = 423/522 (81%), Gaps = 39/522 (7%)

Query: 2   MEPTVGKPSFLRNILVRVLLFSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVTI 61
           MEPT GKPSFLRN++ RVLLF VLII+VRFAY+VTIAGE+CNLGDFCFFSLPDNFN V  
Sbjct: 1   MEPTTGKPSFLRNVMTRVLLFGVLIIIVRFAYIVTIAGETCNLGDFCFFSLPDNFNFVIT 60

Query: 62  GAGTGASGITANKAVRSNIVSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSL 121
           GA   AS   A++A++     P+  D+YTSK+WIKA+NFYSSVFQDLI++GYLS ++KSL
Sbjct: 61  GA---ASNDVASRAIKP--AGPTGDDLYTSKDWIKAINFYSSVFQDLITDGYLSPNSKSL 115

Query: 122 CVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEK 181
           CVET  GQDV+ALKEIGV+D+IGI KK+ KPLVIS +  R+PFD  +FDFVF G    +K
Sbjct: 116 CVETPLGQDVYALKEIGVKDAIGISKKAFKPLVISSKTSRLPFDDESFDFVFSGQGGFDK 175

Query: 182 ASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPY 241
           + +PLD ASE++RTLKPEGF VVHVRAKD YSFNSFL+LFNSC+L+KSR+IDG DSS+ Y
Sbjct: 176 SLRPLDLASEMIRTLKPEGFVVVHVRAKDRYSFNSFLELFNSCQLIKSRNIDGFDSSMLY 235

Query: 242 IREIVLKKESDLILGHRENLPDGNVANKCSVPGYKQAFVRKAEPLIMEEPLKPWITMKRN 301
           IREIVL+K     +G R  + +GN+ NKCSVP +K+  VR AE LI EEPLKPW+T+KRN
Sbjct: 236 IREIVLQKHH---VGER--MSEGNLGNKCSVPEHKRELVRNAEVLIKEEPLKPWLTLKRN 290

Query: 302 IKNIKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFH 361
           I+N+KYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQN+TFDVYAIEADK FH
Sbjct: 291 IQNVKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNRTFDVYAIEADKAFH 350

Query: 362 EEYKVKKKVKLLPYAAWVRNETLSFQINHDPDKEVVVKGRGMGRIQPVQSLSDGG----- 416
           +EYK+                           KEV  +GRGMGRIQPV S S        
Sbjct: 351 QEYKLXX------------------------GKEVKDRGRGMGRIQPVTSSSSSSESDGS 386

Query: 417 FDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLEC 476
           FDGEVD I+GFDFA+WLKNTVT+KDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLEC
Sbjct: 387 FDGEVDTIRGFDFAEWLKNTVTEKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLEC 446

Query: 477 HYNRWQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLVHQWW 518
           HYNRWQRCCPGQRS KY+KTY QCL+LFTSLR++GVLVHQWW
Sbjct: 447 HYNRWQRCCPGQRSSKYEKTYGQCLDLFTSLRESGVLVHQWW 488

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530574|ref|XP_004172269.1| PREDICTED: uncharacterized LOC101209474 [Cucumis sativus]

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/503 (70%), Positives = 422/503 (83%), Gaps = 9/503 (1%)

Query: 22  FSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVTIGAG--TGASGITANKAVRSN 79
           FS+L+I+ RFAYVVTIAGESC++GDFCFFSLP+ FN +  G G  TG++ +  + A    
Sbjct: 21  FSILVIIGRFAYVVTIAGESCSIGDFCFFSLPETFNFMIPGGGGRTGSAALFTDNA-DPR 79

Query: 80  IVSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGV 139
           ++ P R D+Y+S++WIK V FYSSVFQDLI+EGYLS ++KSLC+ET  G DV ALK+IGV
Sbjct: 80  VIGPPRPDLYSSEDWIKTVQFYSSVFQDLITEGYLSPNSKSLCIETPAGADVSALKDIGV 139

Query: 140 EDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPE 199
            +S+GIFKK+ KPLVI GE HRIPF+ NTFDFVF GG+RL+ + +P DFASEI R LKPE
Sbjct: 140 SNSVGIFKKALKPLVIKGEAHRIPFEDNTFDFVFSGGSRLDISRRPHDFASEIARILKPE 199

Query: 200 GFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKESDLILGHRE 259
           GFAVVHV AKD YSFNSF+DLFN CK++K++DID +  S+P  RE VLKKE  ++     
Sbjct: 200 GFAVVHVSAKDTYSFNSFVDLFNCCKILKTKDIDIVLPSMPSTREYVLKKEYRILENGLL 259

Query: 260 NLPDGNVANK--CSVPGYKQAFVRKAEPLIMEEPLKPWITMKRNIKNIKYLPSMADISFK 317
            L +  V++K  CSVPGYK A  R AEPLI+EEPLKPW+T+KRNI+N+KYLPSMA+ISFK
Sbjct: 260 KLNEDGVSHKKNCSVPGYKLALFRNAEPLILEEPLKPWLTLKRNIQNVKYLPSMAEISFK 319

Query: 318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKVKKKVKLLPYAA 377
           NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTF+VYAIEAD+TFHE+YK KK V LLPYAA
Sbjct: 320 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFEVYAIEADQTFHEQYKSKKGVTLLPYAA 379

Query: 378 WVRNETLSFQINHDPDKEVVVKG--RGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKN 435
           WVRNETL+F+IN DP +    KG  RGMGRIQPVQSL  G FDGEV++IQGFDFA+WLKN
Sbjct: 380 WVRNETLAFEINKDPGQGKEDKGGSRGMGRIQPVQSL--GQFDGEVNQIQGFDFANWLKN 437

Query: 436 TVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYNRWQRCCPGQRSPKYKK 495
           TV+ KDFVV+KMDVEGTEF+LIPRLFETGAICLIDE+FLECHYNRWQRCCPGQRS KY+K
Sbjct: 438 TVSQKDFVVLKMDVEGTEFELIPRLFETGAICLIDEMFLECHYNRWQRCCPGQRSTKYEK 497

Query: 496 TYEQCLELFTSLRQNGVLVHQWW 518
           TY +C++LF SLRQ+GVLVHQWW
Sbjct: 498 TYSECIDLFASLRQSGVLVHQWW 520

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461745|ref|XP_004148602.1| PREDICTED: uncharacterized protein LOC101209474 [Cucumis sativus]

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/503 (70%), Positives = 422/503 (83%), Gaps = 9/503 (1%)

Query: 22  FSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVTIGAG--TGASGITANKAVRSN 79
           FS+L+I+ RFAYVVTIAGESC++GDFCFFSLP+ FN +  G G  TG++ +  + A    
Sbjct: 21  FSILVIIGRFAYVVTIAGESCSIGDFCFFSLPETFNFMIPGGGGRTGSAALFTDNA-DPR 79

Query: 80  IVSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGV 139
           ++ P R D+Y+S++WIK V FYSSVFQDLI+EGYLS ++KSLC+ET  G DV ALK+IGV
Sbjct: 80  VIGPPRPDLYSSEDWIKTVQFYSSVFQDLITEGYLSPNSKSLCIETPAGADVSALKDIGV 139

Query: 140 EDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPE 199
            +S+GIFKK+ KPLVI GE HRIPF+ NTFDFVF GG+RL+ + +P DFASEI R LKPE
Sbjct: 140 SNSVGIFKKALKPLVIKGEAHRIPFEDNTFDFVFSGGSRLDISRRPHDFASEIARILKPE 199

Query: 200 GFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKESDLILGHRE 259
           GFAVVHV AKD YSFNSF+DLFN CK++K++DID +  S+P  RE VLKKE  ++     
Sbjct: 200 GFAVVHVSAKDTYSFNSFVDLFNCCKILKTKDIDIVLPSMPSTREYVLKKEYRILENGLL 259

Query: 260 NLPDGNVANK--CSVPGYKQAFVRKAEPLIMEEPLKPWITMKRNIKNIKYLPSMADISFK 317
            L +  V+ K  CSVPGYK A  R AEPLI+EEPLKPW+T+KRNI+N+KYLPSMA+ISFK
Sbjct: 260 KLNEDGVSYKKNCSVPGYKLALFRNAEPLILEEPLKPWLTLKRNIQNVKYLPSMAEISFK 319

Query: 318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKVKKKVKLLPYAA 377
           NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTF+VYAIEAD+TFHE+YK KK V LLPYAA
Sbjct: 320 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFEVYAIEADQTFHEQYKSKKGVTLLPYAA 379

Query: 378 WVRNETLSFQINHDPDKEVVVKG--RGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKN 435
           WVRNETL+F+IN DP +    KG  RGMGRIQPVQSL  G FDGEV++IQGFDFA+WLKN
Sbjct: 380 WVRNETLAFEINKDPGQGKEDKGASRGMGRIQPVQSL--GQFDGEVNQIQGFDFANWLKN 437

Query: 436 TVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYNRWQRCCPGQRSPKYKK 495
           TV++KDFVV+KMDVEGTEF+LIPRLFETGAICLIDE+FLECHYNRWQRCCPGQRS KY+K
Sbjct: 438 TVSEKDFVVLKMDVEGTEFELIPRLFETGAICLIDEMFLECHYNRWQRCCPGQRSTKYEK 497

Query: 496 TYEQCLELFTSLRQNGVLVHQWW 518
           TY +C++LF SLRQ+GVLVHQWW
Sbjct: 498 TYSECIDLFASLRQSGVLVHQWW 520

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439831|ref|XP_004137689.1| PREDICTED: uncharacterized protein LOC101205174 [Cucumis sativus]

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/513 (68%), Positives = 416/513 (81%), Gaps = 17/513 (3%)

Query: 12  LRNILVRVLLFSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVTIGAGTGASGIT 71
           LRN   R LL  V ++V  F+YVV   G+SC  G+FCF     N+          ASG+ 
Sbjct: 7   LRNFF-RALLIPVFLLVAHFSYVVITTGQSCITGNFCFSPKISNYR---------ASGLH 56

Query: 72  ANKAVRSNIVSPS-----RRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQ 126
              +   +  +P+     RRD+YT+K+WIKAV+FYSS+FQDL+S G+LS  +KSLCVET 
Sbjct: 57  PRASAIIDGAAPTAEELLRRDLYTTKDWIKAVHFYSSIFQDLLSVGFLSHKSKSLCVETP 116

Query: 127 YGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPL 186
            GQDVF+LK+IGV DSIGIFKK+SKPLVI G+GH IPFD +TFDF+F+G  RL+++S+P 
Sbjct: 117 NGQDVFSLKQIGVSDSIGIFKKASKPLVIKGQGHEIPFDDDTFDFIFLGVGRLDQSSRPG 176

Query: 187 DFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIV 246
           DFA EI RTLKPEGFAVV +RAKD YSF+SF+ LFN CK+V S+DI+G DSS+P++R+IV
Sbjct: 177 DFAREIARTLKPEGFAVVQIRAKDTYSFHSFIALFNCCKIVTSQDINGPDSSMPFLRQIV 236

Query: 247 LKKESDLILGHRENLPDGNVAN-KCSVPGYKQAFVRKAEPLIMEEPLKPWITMKRNIKNI 305
           L K SD I GH + L     ++ KCS+PG+K+  +RKAEPLI+EEPLKPWIT+KRNI+ I
Sbjct: 237 LTKGSDDIFGHDDVLTHQPKSDGKCSIPGFKEELIRKAEPLILEEPLKPWITLKRNIQKI 296

Query: 306 KYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK 365
           +YLPSMAD+SFK RYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADK FHE+Y 
Sbjct: 297 RYLPSMADVSFKQRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKIFHEQYS 356

Query: 366 VKKKVKLLPYAAWVRNETLSFQINHDPDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQ 425
            KK V+LLPYAAWVRNETL+F+IN DP ++V  KGRGMGRI+PV S S   FDGEVD IQ
Sbjct: 357 SKKGVELLPYAAWVRNETLTFEINRDPGQKVQDKGRGMGRIRPVVS-STRAFDGEVDEIQ 415

Query: 426 GFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYNRWQRCC 485
           GFDFADWLKNTVT+KDFVVMKMDVEGTEFDLIPRLF+TGAICLIDE+FLECHYNRWQRCC
Sbjct: 416 GFDFADWLKNTVTEKDFVVMKMDVEGTEFDLIPRLFKTGAICLIDELFLECHYNRWQRCC 475

Query: 486 PGQRSPKYKKTYEQCLELFTSLRQNGVLVHQWW 518
           PG+RS KY KTY QCL+LF SLR++GVLVHQWW
Sbjct: 476 PGERSAKYDKTYGQCLDLFASLRRSGVLVHQWW 508

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483577|ref|XP_004156629.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101205174 [Cucumis sativus]

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/513 (68%), Positives = 415/513 (80%), Gaps = 17/513 (3%)

Query: 12  LRNILVRVLLFSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVTIGAGTGASGIT 71
           LRN   R LL  V ++V  F+YVV   G+SC  G+FCF     N+          ASG+ 
Sbjct: 7   LRNFF-RALLIPVFLLVAHFSYVVITTGQSCITGNFCFSPKISNYR---------ASGLH 56

Query: 72  ANKAVRSNIVSPS-----RRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQ 126
              +   +  +P+     RRD+YT+K+WIKAV+FYSS+FQDL+S G+LS  +KSLCVET 
Sbjct: 57  PRASAIIDGAAPTAEELLRRDLYTTKDWIKAVHFYSSIFQDLLSVGFLSHKSKSLCVETP 116

Query: 127 YGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPL 186
            GQDVF+LK+IGV DSIGIFKK+SKPLVI G+GH IPFD +TFDF+F G  RL+++S+P 
Sbjct: 117 NGQDVFSLKQIGVSDSIGIFKKASKPLVIKGQGHEIPFDDDTFDFIFXGVGRLDQSSRPG 176

Query: 187 DFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIV 246
           DFA EI RTLKPEGFAVV +RAKD YSF+SF+ LFN CK+V S+DI+G DSS+P++R+IV
Sbjct: 177 DFAREIARTLKPEGFAVVQIRAKDTYSFHSFIALFNCCKIVTSQDINGPDSSMPFLRQIV 236

Query: 247 LKKESDLILGHRENLPDGNVAN-KCSVPGYKQAFVRKAEPLIMEEPLKPWITMKRNIKNI 305
           L K SD I GH + L     ++ KCS+PG+K+  +RKAEPLI+EEPLKPWIT+KRNI+ I
Sbjct: 237 LTKGSDDIFGHDDVLTHQPKSDGKCSIPGFKEELIRKAEPLILEEPLKPWITLKRNIQKI 296

Query: 306 KYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK 365
           +YLPSMAD+SFK RYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADK FHE+Y 
Sbjct: 297 RYLPSMADVSFKQRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKIFHEQYS 356

Query: 366 VKKKVKLLPYAAWVRNETLSFQINHDPDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQ 425
            KK V+LLPYAAWVRNETL+F+IN DP ++V  KGRGMGRI+PV S S   FDGEVD IQ
Sbjct: 357 SKKGVELLPYAAWVRNETLTFEINRDPGQKVQDKGRGMGRIRPVVS-STRAFDGEVDEIQ 415

Query: 426 GFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYNRWQRCC 485
           GFDFADWLKNTVT+KDFVVMKMDVEGTEFDLIPRLF+TGAICLIDE+FLECHYNRWQRCC
Sbjct: 416 GFDFADWLKNTVTEKDFVVMKMDVEGTEFDLIPRLFKTGAICLIDELFLECHYNRWQRCC 475

Query: 486 PGQRSPKYKKTYEQCLELFTSLRQNGVLVHQWW 518
           PG+RS KY KTY QCL+LF SLR++GVLVHQWW
Sbjct: 476 PGERSAKYDKTYGQCLDLFASLRRSGVLVHQWW 508

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	518
TAIR|locus:2149790	513	AT5G01710 [Arabidopsis thalian	0.986	0.996	0.701	5.9e-199
TAIR|locus:2023986	239	AT1G24480 [Arabidopsis thalian	0.320	0.694	0.359	1.2e-23
TAIR|locus:504955468	247	AT4G24805 [Arabidopsis thalian	0.305	0.639	0.391	1.5e-23
TAIR|locus:2084021	466	AT3G53400 "AT3G53400" [Arabido	0.484	0.538	0.246	2.5e-23
TAIR|locus:2196240	420	AT1G58120 "AT1G58120" [Arabido	0.156	0.192	0.348	6.4e-16
TAIR|locus:2116412	208	AT4G26730 [Arabidopsis thalian	0.260	0.649	0.321	1.5e-11
TAIR|locus:2052936	231	AT2G16030 [Arabidopsis thalian	0.287	0.645	0.289	2.8e-11
TAIR|locus:2143478	475	CPUORF47 "conserved peptide up	0.223	0.244	0.310	3.9e-08

TAIR|locus:2149790 AT5G01710 [Arabidopsis thaliana (taxid:3702)]

 Score = 1926 (683.0 bits), Expect = 5.9e-199, P = 5.9e-199
 Identities = 364/519 (70%), Positives = 416/519 (80%)

Query:     2 MEPTVGKPSFLRNILVRVLLFSVLIIVVRFAYVVTIAGESCNLGDFCFFSLPDNFNLVXX 61
             ME ++GKPSFLRNI+VRVLLF VLIIVVRFAYVVTI GESCN GDFCFFSLP+N N V  
Sbjct:     1 METSMGKPSFLRNIMVRVLLFGVLIIVVRFAYVVTITGESCNRGDFCFFSLPENLNFVIS 60

Query:    62 XXXXXXXXXXXNKAVRSNIVSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSL 121
                          A+RS   SP   D+YT+++WIK+V FYSS+FQDLI++GYLS  +K+L
Sbjct:    61 GAASGSSAID---AIRST--SPGD-DLYTTRDWIKSVQFYSSIFQDLIADGYLSPESKTL 114

Query:   122 CVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEK 181
             CVET  GQ+V +L+EIGV++S+GI KK+S+PLV+ GEGH IPF+ N FDFVF GG RL K
Sbjct:   115 CVETAIGQEVHSLREIGVKNSVGISKKASRPLVVRGEGHAIPFEDNAFDFVFSGGDRLGK 174

Query:   182 ASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPY 241
             + K L+FA EI RTLKPEGFAVVHV A D YSFNSFLDLFNSC+LVK RDIDG D S+P+
Sbjct:   175 SLKQLEFADEITRTLKPEGFAVVHVGATDTYSFNSFLDLFNSCRLVKMRDIDGFDPSMPH 234

Query:   242 IREIVLKKESDLILGHRENLPDGNVANKCSVPGYKQAFVRKAEPLIMEEPLKPWITMKRN 301
             IRE V++K S++  G   +   G+   KC +PGYK+  +R AEPLI EEPLKPWIT+KRN
Sbjct:   235 IREFVIQKYSEIDGGGHHHRGGGDSGGKCWIPGYKRDLIRDAEPLIQEEPLKPWITLKRN 294

Query:   302 IKNIKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFH 361
             IKNIKY+PSM DI FK+RYVYVDVGARSYGSSIGSWFKK+YPKQNKTFDV+AIEADK FH
Sbjct:   295 IKNIKYVPSMVDIRFKSRYVYVDVGARSYGSSIGSWFKKEYPKQNKTFDVFAIEADKAFH 354

Query:   362 EEYXXXXXXXXXPYAAWVRNETLSFQINHDPDKEVVVK--GRGMGRIQPVQSLSDGGFDG 419
             EEY         PYAAWVRNETLSF+INHDP KEV  K  GRGMGRIQPV+        G
Sbjct:   355 EEYKIKKKVNLLPYAAWVRNETLSFEINHDPGKEVEAKAKGRGMGRIQPVKKSDSSDLAG 414

Query:   420 EVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYN 479
             EV+ IQGFDFADWLK +V ++DFVVMKMDVEGTEFDLIPRL +TGAICLIDE+FLECHYN
Sbjct:   415 EVNLIQGFDFADWLKKSVRERDFVVMKMDVEGTEFDLIPRLIKTGAICLIDELFLECHYN 474

Query:   480 RWQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLVHQWW 518
             RWQRCCPGQRS KY KTY QCLELF SLRQ GVLVHQWW
Sbjct:   475 RWQRCCPGQRSQKYNKTYNQCLELFNSLRQRGVLVHQWW 513

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2023986 AT1G24480 [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 65/181 (35%), Positives = 99/181 (54%)

Query:    81 VSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVE 140
             ++P  R ++ +++W + +  +S  FQDL  +G LS+ +K LC+  + GQ+V ALK +GV 
Sbjct:    58 LNPRLRTIWMTRDWDRKIKVFSRFFQDLKRQGLLSKDSKCLCLGARVGQEVEALKRVGVN 117

Query:   141 DSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEG 200
             DS+G+      PLV+ G+ H  PFD  TFDF F      + A  P  F  EI RTL+P G
Sbjct:   118 DSVGMDLVPYPPLVVKGDFHHQPFDDETFDFEFSNV--FDHALYPDKFVGEIERTLRPGG 175

Query:   201 FAVVHVRAK---DEYSFN------SFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKES 251
               V+HV      D+YS N      + + LF   ++V  R++DG         E+V +K+ 
Sbjct:   176 LCVLHVALSTRSDKYSANDLFSVEALVKLFRQSEVVHVRNVDGFGLDT----EVVFRKKR 231

Query:   252 D 252
             D
Sbjct:   232 D 232

GO:0005576 "extracellular region" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:504955468 AT4G24805 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 1.5e-23, P = 1.5e-23
 Identities = 67/171 (39%), Positives = 95/171 (55%)

Query:    82 SPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVED 141
             +P  R ++T+++W + V  +S+ F+ L   G LS  +K+L +  + GQ+V AL+ IGVED
Sbjct:    74 NPKLRKVWTTRDWDRKVRVFSTFFRRLSDRGLLSNQSKALSIGARVGQEVAALRLIGVED 133

Query:   142 SIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGF 201
             S+GI      PLV+ G+ H  PFD  TFDF F      + A  P  F  EI RTLKP G 
Sbjct:   134 SVGIDLVPRPPLVVKGDFHAQPFDEETFDFEFSNV--FDHALYPEKFVGEIERTLKPGGV 191

Query:   202 AVVHVRAK---DEYSFNSFLD------LFNSCKLVKSRDIDG--IDSSLPY 241
              V+HV      D+YS N  L       LF   K+V+ R IDG  +D+ + +
Sbjct:   192 CVLHVSISGKTDKYSANDLLSVKPLVKLFKRSKVVEMRKIDGFGLDTEIVF 242

GO:0005576 "extracellular region" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2084021 AT3G53400 "AT3G53400" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 2.5e-23, Sum P(3) = 2.5e-23
 Identities = 67/272 (24%), Positives = 114/272 (41%)

Query:    99 NFY--SSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVED-SIGIFKK--SSKPL 153
             N Y  + V ++L     LS  +K+LC+  +    V A+   G+ D S+       + K  
Sbjct:    98 NIYLTTQVVRELTGMNLLSNDSKALCIGRRSVSAVLAMNRQGISDVSVAYMPPVFAFKHR 157

Query:   154 VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYS 213
               + E H   ++  +F FVF     LE  + P     EI R LKP G   + V       
Sbjct:   158 KFTSELH---YEDASFGFVF--SMDLESVAVPASLVYEIERILKPGGTGAMLVGTTSGSD 212

Query:   214 FNSFLDLFNSCK-LVKSRDIDGIDSSLPYIREIVLKKESDLILGHRENLPDGNVANKCSV 272
              N  +   +    L+K+  +  + +SL     +V K++ +     R +    +    CS 
Sbjct:   213 SNELVRSVSPVSSLLKNSSVVHV-ASLGKQVLVVFKRDGED--SFRLDQTHHDFPADCSS 269

Query:   273 PGYKQAFVRKAEPLIMEEPLKPWITMKRNIKNIKYLPSMADISFKNRYVYVDVGARSYGS 332
                 + ++   EPL+ E+        +R I    YLP   D+S + R VY+D+GA  +  
Sbjct:   270 VLNNRPYIGLLEPLLDEKRSD----FERRIH---YLPEFIDLSSRKRLVYIDIGAVDHVK 322

Query:   333 SIGSWFKKQYPKQNKTFDVYAIEADKTFHEEY 364
             +  +WF   YP   K F+ Y +  + +    Y
Sbjct:   323 ARSNWFFPSYPIDRKAFNSYFVHHNTSILTSY 354

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2196240 AT1G58120 "AT1G58120" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 6.4e-16, Sum P(3) = 6.4e-16
 Identities = 31/89 (34%), Positives = 50/89 (56%)

Query:   431 DWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECHYNRWQRCCPGQR- 489
             +WLK  V ++++VVMK + E     ++  +  + +I ++DE+FLEC          G++ 
Sbjct:   338 EWLKENVKEEEYVVMKAEAE-----MVEEMMRSKSIKMVDELFLECKPKGLG--LRGRKM 390

Query:   490 SPKYKKTYEQCLELFTSLRQNGVLVHQWW 518
               K  + Y +CL L+  LR  GV VHQWW
Sbjct:   391 QSKSGRAYWECLALYGKLRDEGVAVHQWW 419

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2116412 AT4G26730 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 46/143 (32%), Positives = 70/143 (48%)

Query:    88 MYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFK 147
             ++ S  W   ++ +S+ F      G++    K+LC+    G    AL +IG+ D   +  
Sbjct:    35 IWFSGAWKSRLSSFSTYFLRFRDLGFIQNHTKALCLSDGAGHAPMALSQIGLSDVTAVEL 94

Query:   148 KSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR 207
               S PLV   + H +PF    FDFVF   A L +A  P  F  E+ RT++  GF VV V 
Sbjct:    95 VDSIPLVKRADPHNLPFFDRVFDFVFT--AHLAEALFPWRFVEEMERTVRRGGFCVVAV- 151

Query:   208 AKDEYSFNSFLDL---FNSCKLV 227
               DE S +   D+   F++ K+V
Sbjct:   152 --DECSGDDVRDIARFFHNSKIV 172

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2052936 AT2G16030 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 44/152 (28%), Positives = 70/152 (46%)

Query:    77 RSNIVSPSRRD-MYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALK 135
             R ++  P +   +++S  W   +  +S+ F      G++    K+LC+    G  + AL 
Sbjct:    58 RQHLPLPKKNARIWSSGAWKSRLYSFSTYFLRFRDLGFIQNHTKALCLSAGAGHALMALS 117

Query:   136 EIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRT 195
             +IG+ D   +    S PLV   + H +PF    FDF F   A L +A  P  F  E+ RT
Sbjct:   118 QIGLSDVTAVELVDSIPLVKRADPHNLPFFDGVFDFAFT--AHLAEALFPWQFVEEMERT 175

Query:   196 LKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLV 227
             ++  GF VV V             LF++ K+V
Sbjct:   176 VRRGGFCVVSVDECGGDDVRDIARLFHNSKVV 207

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2143478 CPUORF47 "conserved peptide upstream open reading frame 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
 Identities = 41/132 (31%), Positives = 63/132 (47%)

Query:   346 NKTFDVYAIEADKTFHEEYXXXXXXXXXPYAAWVRNETLSFQINHDPDKEVVVKGRGMGR 405
             N  F +Y +++ K F+  +          Y   V+   ++F + H PD   + +    G+
Sbjct:   332 NWFFPLYPLDS-KAFNVYFVDHNTSVMLSY---VKKPGVTF-VYH-PD---LAENNSTGK 382

Query:   406 -IQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETG 464
              I P++ L    F  E +R   FDF  W + T    DFVV+KM+    E   +  L ETG
Sbjct:   383 KITPLEQLEP--FP-EDER---FDFLAWFEETAKYADFVVLKMNTNQVEMKFLTVLLETG 436

Query:   465 AICLIDEIFLEC 476
              IC +DE+FL C
Sbjct:   437 VICYVDELFLRC 448

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00161226 hypothetical protein (514 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	518
TIGR01444	144	TIGR01444, fkbM_fam, methyltransferase, FkbM famil	1e-07
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	2e-05
pfam05050	174	pfam05050, Methyltransf_21, Methyltransferase FkbM	2e-04

>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 41/166 (24%), Positives = 61/166 (36%), Gaps = 31/166 (18%)

Query: 321 VYVDVGARSYGSSIGS---WFKKQYPKQNKTFDVYAIEADKTFHE--EYKVK----KKVK 371
           V +DVGA     +IG    +F ++  +      V A E     +E  E  VK      V 
Sbjct: 1   VVIDVGA-----NIGDFSLYFARKGAEG----RVIAFEPLPDAYEILEENVKLNNLPNVV 51

Query: 372 LLPYAAWVRNETLSFQINHDPDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFAD 431
           LL  A   R+  L F         V     G   +    S        EV+ +      D
Sbjct: 52  LLNAAVGDRDGELEF--------NVSDLNTGSSSLAADSSADRETESIEVEVV---TLDD 100

Query: 432 WLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFLECH 477
            ++    DK   ++K+DVEG E +++ R      +     I LE H
Sbjct: 101 LVEEFGLDK-VDLLKIDVEGAELEVL-RGAAETLLRKRPGIVLEVH 144

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. Length = 144

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 140 EDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPE 199
            + + + +K +    + G+   +PF   +FD V      L     P     EI R LKP 
Sbjct: 29  PEMLALARKRAPRKFVVGDAEDLPFPDESFDVVVSSLV-LHHLPDPERALREIARVLKPG 87

Query: 200 GFAVV 204
           G  V+
Sbjct: 88  GKLVI 92

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|218402 pfam05050, Methyltransf_21, Methyltransferase FkbM domain

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 31/187 (16%), Positives = 50/187 (26%), Gaps = 45/187 (24%)

Query: 324 DVGARSYGSSIGSWFKKQYPKQNKTFD------VYAIEADKTFHEEYKVKKKVKLLPYAA 377
           D GA       G+  +      N T        V AIE      E         L  +A 
Sbjct: 1   DCGANKLEPFRGNPDEFWDSFLNVTKKCDNLKEVLAIEPFPNSDE-----TYHILPKFAV 55

Query: 378 WVRNETLSFQINHDPDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTV 437
              N   +  +  D     V           V ++               D   + KN +
Sbjct: 56  GGENGLSTASVLEDIKYITV----------EVVTI---------------DIIYFFKNIL 90

Query: 438 TDKDFVVMKMDVEGTEFDLIPRLFETGAIC---------LIDEIFLECHYNRWQRCCPGQ 488
                 ++K+D+EG E+ ++  L   G             I+ I  E H           
Sbjct: 91  KKNTIDILKIDIEGAEYPVLDMLHRNGEFDENGIKVCQINIEIIIGEKHKFHDFIWRLLF 150

Query: 489 RSPKYKK 495
               ++ 
Sbjct: 151 VYEDFEH 157

This family has members from bacteria to human, and appears to be a methyltransferase. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	518
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.79
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	99.75
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.75
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.68
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.6
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.57
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.55
PRK05785	226	hypothetical protein; Provisional	99.54
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.54
PLN02244	340	tocopherol O-methyltransferase	99.53
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	99.51
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.5
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.48
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.46
PLN02336	475	phosphoethanolamine N-methyltransferase	99.43
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.41
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.41
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.4
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.4
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.38
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.38
PLN02336	475	phosphoethanolamine N-methyltransferase	99.37
PRK11207	197	tellurite resistance protein TehB; Provisional	99.33
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.32
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.32
PLN02490	340	MPBQ/MSBQ methyltransferase	99.31
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.3
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.3
PRK08317	241	hypothetical protein; Provisional	99.29
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.28
KOG4300	252	consensus Predicted methyltransferase [General fun	99.24
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.23
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.22
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.22
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.22
PRK12335	287	tellurite resistance protein TehB; Provisional	99.21
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.17
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.17
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.16
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.16
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.16
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.15
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.13
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.13
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.12
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.12
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.12
PRK06922	677	hypothetical protein; Provisional	99.11
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.1
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.08
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.08
PRK06202	232	hypothetical protein; Provisional	99.06
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.05
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.03
PRK04266	226	fibrillarin; Provisional	99.03
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.01
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.01
PF13383	242	Methyltransf_22: Methyltransferase domain	98.99
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.98
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.98
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.98
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.97
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.95
TIGR00438	188	rrmJ cell division protein FtsJ.	98.93
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.92
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.92
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.91
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.9
PTZ00146	293	fibrillarin; Provisional	98.88
PRK14967	223	putative methyltransferase; Provisional	98.87
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.86
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.85
PLN03075	296	nicotianamine synthase; Provisional	98.84
KOG3010	261	consensus Methyltransferase [General function pred	98.84
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.81
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.81
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.81
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.8
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.8
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.79
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.79
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.79
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.78
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.78
PRK14968	188	putative methyltransferase; Provisional	98.75
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.73
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.7
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.69
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.67
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.67
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.67
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.67
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.67
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.66
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.65
TIGR03438	301	probable methyltransferase. This model represents	98.65
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.63
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.62
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.62
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.61
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.52
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.51
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.49
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.48
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.47
PRK07402	196	precorrin-6B methylase; Provisional	98.47
KOG1271	227	consensus Methyltransferases [General function pre	98.46
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.4
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.4
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.38
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.37
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.36
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.36
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.35
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.35
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.34
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.31
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.31
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.3
COG2521	287	Predicted archaeal methyltransferase [General func	98.29
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.29
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.29
KOG2940	325	consensus Predicted methyltransferase [General fun	98.28
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.22
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.2
PRK00811	283	spermidine synthase; Provisional	98.2
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.19
KOG1331	293	consensus Predicted methyltransferase [General fun	98.18
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.18
PRK04457	262	spermidine synthase; Provisional	98.18
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.17
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.17
PHA03411	279	putative methyltransferase; Provisional	98.17
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.15
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.14
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.12
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.11
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.0
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	97.99
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.97
COG4123	248	Predicted O-methyltransferase [General function pr	97.97
KOG2361	264	consensus Predicted methyltransferase [General fun	97.96
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.89
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	97.89
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.88
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	97.86
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.85
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.84
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.83
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.83
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.82
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.82
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.81
PRK01581	374	speE spermidine synthase; Validated	97.81
PRK03612	521	spermidine synthase; Provisional	97.79
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.77
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.73
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.72
PLN02366	308	spermidine synthase	97.71
PHA03412	241	putative methyltransferase; Provisional	97.68
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.68
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.64
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.63
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.62
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.58
COG2890	280	HemK Methylase of polypeptide chain release factor	97.56
KOG2899	288	consensus Predicted methyltransferase [General fun	97.55
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.51
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.5
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.48
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.46
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.44
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.42
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.41
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.39
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	97.32
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	97.3
PLN02672	1082	methionine S-methyltransferase	97.23
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.22
PF05575	286	V_cholerae_RfbT: Vibrio cholerae RfbT protein; Int	97.2
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.16
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.1
COG4122	219	Predicted O-methyltransferase [General function pr	97.09
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.08
PLN02476	278	O-methyltransferase	97.04
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.03
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.02
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.0
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	96.96
PRK04148	134	hypothetical protein; Provisional	96.96
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	96.87
PHA01634	156	hypothetical protein	96.87
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	96.84
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	96.83
KOG2904	328	consensus Predicted methyltransferase [General fun	96.82
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	96.81
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.73
PLN02823	336	spermine synthase	96.61
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	96.57
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	96.46
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	96.33
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	96.27
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	96.21
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	96.16
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	96.15
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.15
PLN02589	247	caffeoyl-CoA O-methyltransferase	96.14
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.13
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	96.13
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.12
PRK00536	262	speE spermidine synthase; Provisional	96.07
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	96.04
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	96.03
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	95.86
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	95.85
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	95.82
COG0742	187	N6-adenine-specific methylase [DNA replication, re	95.68
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	95.39
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	95.39
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	95.35
PF03269	177	DUF268: Caenorhabditis protein of unknown function	95.34
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	95.3
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	95.09
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	94.97
PF13679	141	Methyltransf_32: Methyltransferase domain	94.95
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.91
COG4798	238	Predicted methyltransferase [General function pred	94.79
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	94.76
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	94.6
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	94.52
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	94.39
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	94.3
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	94.11
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	94.06
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	93.94
COG2520	341	Predicted methyltransferase [General function pred	93.72
COG3897	218	Predicted methyltransferase [General function pred	93.66
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	93.56
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	93.42
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	93.31
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	93.23
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	93.18
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	93.01
PLN02668	386	indole-3-acetate carboxyl methyltransferase	92.75
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	92.16
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	91.55
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	91.16
PRK13699	227	putative methylase; Provisional	91.16
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	90.6
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	90.55
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	89.97
PRK11524	284	putative methyltransferase; Provisional	88.95
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	88.52
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	88.48
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	88.29
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	88.03
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	87.96
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	87.81
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	87.2
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	86.83
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	86.66
COG2265	432	TrmA SAM-dependent methyltransferases related to t	86.25
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	86.24
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	86.21
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	85.82
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	85.55
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	85.55
COG4262	508	Predicted spermidine synthase with an N-terminal m	85.21
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	85.05
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	84.2
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	83.95
COG4076	252	Predicted RNA methylase [General function predicti	83.76
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	83.7
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	83.31
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	83.22
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	83.03
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	82.85
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	81.49
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	81.37
PRK07402	196	precorrin-6B methylase; Provisional	81.24
PRK04457	262	spermidine synthase; Provisional	80.87
PRK10742	250	putative methyltransferase; Provisional	80.34
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	80.17
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	80.11

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.79  E-value=3.9e-19  Score=176.11  Aligned_cols=112  Identities=25%  Similarity=0.346  Sum_probs=91.0

Q ss_pred             ccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC---------------C
Q 010086           88 MYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS---------------K  151 (518)
Q Consensus        88 ~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~---------------~  151 (518)
                      +...+.||+..          ++.-.+.+|.+|||||||||..+..+++ .|.++|+|+|+|++               .
T Consensus        33 ~g~~~~Wr~~~----------i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~  102 (238)
T COG2226          33 FGLHRLWRRAL----------ISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN  102 (238)
T ss_pred             CcchHHHHHHH----------HHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc
Confidence            34567777742          2222345899999999999999988887 45679999999842               1


Q ss_pred             CcEEeccCCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE-ecCCC
Q 010086          152 PLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH-VRAKD  210 (518)
Q Consensus       152 ~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~-~~~~~  210 (518)
                      ..++.+|+++|||+|+|||+|++..+ |++++|+.++++|++|||||||++++. ++...
T Consensus       103 i~fv~~dAe~LPf~D~sFD~vt~~fg-lrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~  161 (238)
T COG2226         103 VEFVVGDAENLPFPDNSFDAVTISFG-LRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD  161 (238)
T ss_pred             eEEEEechhhCCCCCCccCEEEeeeh-hhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence            23579999999999999999999998 999999999999999999999998775 55443

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=99.75  E-value=6.1e-18  Score=153.26  Aligned_cols=137  Identities=25%  Similarity=0.296  Sum_probs=104.2

Q ss_pred             EEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhc------cCCceEEEeeceeecCCceEEEecCCCCc
Q 010086          321 VYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK------VKKKVKLLPYAAWVRNETLSFQINHDPDK  394 (518)
Q Consensus       321 V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~------~~~~V~~~~~Av~~~~~tl~f~~~~~~~~  394 (518)
                      +++|+||| .|. .+.||.+.+|..    .||+|||||...+.++      ..++|++++.|+|.++|+++|+.....+ 
T Consensus         1 ~vlDiGa~-~G~-~~~~~~~~~~~~----~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~~g~~~~~~~~~~~-   73 (143)
T TIGR01444         1 VVIDVGAN-IGD-TSLYFARKGAEG----RVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDRDGELEFNVSDDDT-   73 (143)
T ss_pred             CEEEccCC-ccH-HHHHHHHhCCCC----EEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCCCCeEEEEECCCCC-
Confidence            58999999 685 557999888854    7999999999766433      3367999999999999999998775432 


Q ss_pred             chhhcccCCccccccccCCCCCCCCCcceeecccHHHHHhhcCCCCCeEEEEeeccchhhhhHHHHHhcCCcccccEEEE
Q 010086          395 EVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFL  474 (518)
Q Consensus       395 ~~~~~~~g~~~i~p~~~~~~~~~~g~~~~v~~vd~s~wl~~~v~~~D~VVlKMDIEGaE~~vL~~l~~~g~i~~IDeLfv  474 (518)
                             +.+++.+....    ......+|+.+.+.+|+++.- ...+.+|||||||+|+++|+.+.+. ..+.++.+++
T Consensus        74 -------~~s~~~~~~~~----~~~~~~~v~~~~Ld~~l~~~~-~~~i~~lKiDiEG~E~~vL~g~~~~-l~~~~~~i~~  140 (143)
T TIGR01444        74 -------GNSSLLPTPDA----DRESKVEVEVVTLDDLVEEFG-LDKVDLLKIDVEGAELEVLRGAKET-LLRKRPGIVL  140 (143)
T ss_pred             -------CceeeecCCCc----CCCceEEEEEEEHHHHHHHcC-CCCCCEEEEeCCCchHHHHhChHHH-HHHhCCeEEE
Confidence                   12334432211    123446799999999999872 2334479999999999999999643 2389999999


Q ss_pred             Eee
Q 010086          475 ECH  477 (518)
Q Consensus       475 E~H  477 (518)
                      |+|
T Consensus       141 E~h  143 (143)
T TIGR01444       141 EVH  143 (143)
T ss_pred             EeC
Confidence            999

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.75  E-value=1.9e-18  Score=171.36  Aligned_cols=140  Identities=20%  Similarity=0.235  Sum_probs=71.7

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      .+++.+|||||||||..+..+.+. + ..+|+|+|+|+.               ...++++|+++|||+|+|||+|++++
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f  124 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF  124 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence            467899999999999999887663 3 369999999841               12367899999999999999999999


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEE-ecCCCccCchhHhhhccCccEEEEeccCCCCCCccceeEEEEeecccccc
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVH-VRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKESDLIL  255 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~-~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~~p~~~~vv~kK~~~~~~  255 (518)
                      + +++++|+.++++|++|||||||++++. ++..+.   ..+..+++    .|.+.+      +|.+..+..++.  .  
T Consensus       125 g-lrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~---~~~~~~~~----~y~~~i------lP~~g~l~~~~~--~--  186 (233)
T PF01209_consen  125 G-LRNFPDRERALREMYRVLKPGGRLVILEFSKPRN---PLLRALYK----FYFKYI------LPLIGRLLSGDR--E--  186 (233)
T ss_dssp             --GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS---HHHHHHHH----H----------------------------
T ss_pred             h-HHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCC---chhhceee----eeeccc------cccccccccccc--c--
Confidence            8 999999999999999999999998876 444332   12222333    344333      555555555432  1  


Q ss_pred             ccccCCCCCccccCCCCch
Q 010086          256 GHRENLPDGNVANKCSVPG  274 (518)
Q Consensus       256 ~~~~~~~~~~~~~~C~~~~  274 (518)
                         +..|-..++..+..++
T Consensus       187 ---~Y~yL~~Si~~f~~~~  202 (233)
T PF01209_consen  187 ---AYRYLPESIRRFPSPE  202 (233)
T ss_dssp             -------------------
T ss_pred             ---cccccccccccccccc
Confidence               2344455666655443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.68  E-value=9.8e-17  Score=133.32  Aligned_cols=83  Identities=30%  Similarity=0.406  Sum_probs=70.6

Q ss_pred             EEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------C--CcEEeccCCCCCCCCCceeEEEEcCceeeccCChHHH
Q 010086          121 LCVETQYGQDVFALKEIGVEDSIGIFKKSS----------K--PLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDF  188 (518)
Q Consensus       121 LDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------~--~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~  188 (518)
                      ||+|||+|..+..|.+.+..+++|+|+++.          .  ..++.++.+++||+|++||+|++..+ ++|++++.++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~-~~~~~~~~~~   79 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSV-LHHLEDPEAA   79 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESH-GGGSSHHHHH
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccc-eeeccCHHHH
Confidence            899999999999998885589999999841          1  12678999999999999999999998 9999999999


Q ss_pred             HHHHHhcccCCcEEEE
Q 010086          189 ASEIVRTLKPEGFAVV  204 (518)
Q Consensus       189 l~Ei~RVLKPGG~lvi  204 (518)
                      ++|+.|+|||||++++
T Consensus        80 l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   80 LREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHcCcCeEEeC
Confidence            9999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.60  E-value=5.7e-15  Score=147.45  Aligned_cols=118  Identities=14%  Similarity=0.098  Sum_probs=98.6

Q ss_pred             ccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC--------CCcEEecc
Q 010086           88 MYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS--------KPLVISGE  158 (518)
Q Consensus        88 ~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~--------~~l~~~~d  158 (518)
                      .|++..|.+...+-...+.++++.....++.+|||||||+|..+..+++.. ..+|+|+|+|+.        ...++.+|
T Consensus         1 ~w~~~~y~~~~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d   80 (255)
T PRK14103          1 MWDPDVYLAFADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGD   80 (255)
T ss_pred             CCCHHHHHHHHhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcC
Confidence            488999988777766777777776666788999999999999998887752 368999999852        23456889


Q ss_pred             CCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          159 GHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       159 a~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +++++ ++++||+|+|..+ |||++++.++++++.|+|||||.+++.+.
T Consensus        81 ~~~~~-~~~~fD~v~~~~~-l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103         81 VRDWK-PKPDTDVVVSNAA-LQWVPEHADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             hhhCC-CCCCceEEEEehh-hhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence            88875 6789999999997 99999999999999999999999998753

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.57  E-value=1.2e-14  Score=146.32  Aligned_cols=95  Identities=25%  Similarity=0.293  Sum_probs=80.6

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC------------------CCcEEeccCCCCCCCCCceeEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS------------------KPLVISGEGHRIPFDGNTFDFVF  173 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~------------------~~l~~~~da~~LPf~D~SFD~V~  173 (518)
                      ++++.+|||||||||..+..+.+. + ..+|+|+|+|+.                  ...++++|++++||++++||+|+
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence            567899999999999998877764 3 358999999841                  11256899999999999999999


Q ss_pred             EcCceeeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      +..+ +||+++|.++++|+.|+|||||.+++.....
T Consensus       151 ~~~~-l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        151 MGYG-LRNVVDRLKAMQEMYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             Eecc-cccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence            9987 9999999999999999999999998875433

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.55  E-value=3.8e-14  Score=139.85  Aligned_cols=94  Identities=18%  Similarity=0.220  Sum_probs=77.8

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHh-cCC------CcEEEEecCCC-----------------C-CcEEeccCCCCCCCCCce
Q 010086          115 SQSAKSLCVETQYGQDVFALKE-IGV------EDSIGIFKKSS-----------------K-PLVISGEGHRIPFDGNTF  169 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~-~g~------~~v~gID~s~~-----------------~-~l~~~~da~~LPf~D~SF  169 (518)
                      .++.++|||+||||..+..+.+ .+.      .+|+..|+++.                 + ..++.+|++.|||+|++|
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~  178 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF  178 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence            4578999999999999865543 222      68999999841                 0 124678999999999999


Q ss_pred             eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE-ecCC
Q 010086          170 DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH-VRAK  209 (518)
Q Consensus       170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~-~~~~  209 (518)
                      |..++.+. ++++.+++++++|++|||||||++.+. +++-
T Consensus       179 D~yTiafG-IRN~th~~k~l~EAYRVLKpGGrf~cLeFskv  218 (296)
T KOG1540|consen  179 DAYTIAFG-IRNVTHIQKALREAYRVLKPGGRFSCLEFSKV  218 (296)
T ss_pred             eeEEEecc-eecCCCHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence            99999997 999999999999999999999998765 5543

>PRK05785 hypothetical protein; Provisional

Probab=99.54  E-value=4.3e-14  Score=139.43  Aligned_cols=92  Identities=16%  Similarity=0.204  Sum_probs=76.3

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------CCcEEeccCCCCCCCCCceeEEEEcCceeeccCChHH
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLD  187 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~  187 (518)
                      .++.+|||||||||..+..+++....+|+|+|+|+.       ....++++++++||+|++||+|++..+ ++|++|+.+
T Consensus        50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~-l~~~~d~~~  128 (226)
T PRK05785         50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFA-LHASDNIEK  128 (226)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecCh-hhccCCHHH
Confidence            357899999999999998888762259999999852       123568999999999999999999997 999999999


Q ss_pred             HHHHHHhcccCCcEEEEEecC
Q 010086          188 FASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       188 ~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +++|++|||||. ..++.++.
T Consensus       129 ~l~e~~RvLkp~-~~ile~~~  148 (226)
T PRK05785        129 VIAEFTRVSRKQ-VGFIAMGK  148 (226)
T ss_pred             HHHHHHHHhcCc-eEEEEeCC
Confidence            999999999994 33444443

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.54  E-value=6.1e-14  Score=139.39  Aligned_cols=91  Identities=15%  Similarity=0.177  Sum_probs=79.8

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------CCcEEeccCCCCCCCCCceeEEEEcCceeeccCC
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASK  184 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~d  184 (518)
                      .++.+|||+|||+|..+..|.+.| .+++|+|+++.          ...++.+|++.+||++++||+|+|..+ ++|..+
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~-l~~~~d  118 (251)
T PRK10258         41 RKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLA-VQWCGN  118 (251)
T ss_pred             cCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECch-hhhcCC
Confidence            456899999999999998888776 79999999852          123578999999999999999999987 999999


Q ss_pred             hHHHHHHHHhcccCCcEEEEEec
Q 010086          185 PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       185 p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +..++.|+.|+|||||.+++.+.
T Consensus       119 ~~~~l~~~~~~Lk~gG~l~~~~~  141 (251)
T PRK10258        119 LSTALRELYRVVRPGGVVAFTTL  141 (251)
T ss_pred             HHHHHHHHHHHcCCCeEEEEEeC
Confidence            99999999999999999998753

>PLN02244 tocopherol O-methyltransferase

Probab=99.53  E-value=5.2e-14  Score=146.84  Aligned_cols=91  Identities=19%  Similarity=0.221  Sum_probs=79.4

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      +++.+|||||||+|..+..|++....+|+|||+++.                ...++.+|+.++||+|++||+|++..+ 
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~-  195 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES-  195 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc-
Confidence            678899999999999998888752369999999841                123568899999999999999999987 


Q ss_pred             eeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          179 LEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ++|++++.++++|+.|+|||||.+++..
T Consensus       196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        196 GEHMPDKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             hhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            9999999999999999999999998875

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=99.51  E-value=1.2e-14  Score=133.44  Aligned_cols=153  Identities=27%  Similarity=0.378  Sum_probs=62.4

Q ss_pred             EeCCCCCC--cchhhhhh-hhCCCCCcceEEEEEcCCccchHhhcc--------C-CceEEEeeceeecCCceEEEecCC
Q 010086          324 DVGARSYG--SSIGSWFK-KQYPKQNKTFDVYAIEADKTFHEEYKV--------K-KKVKLLPYAAWVRNETLSFQINHD  391 (518)
Q Consensus       324 D~GAn~~g--~sv~~~F~-~~YP~~~~~f~V~afE~np~~~~~~~~--------~-~~V~~~~~Av~~~~~tl~f~~~~~  391 (518)
                      ||||| +|  ++...++. +..|    +..||+|||||...+.+..        . ..+++++.++|..+....+....+
T Consensus         1 DvGA~-~G~~~~~~~~~~~~~~~----~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (167)
T PF05050_consen    1 DVGAN-IGFWSSTVYFLEKKCGP----GGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAVSDGSSFFFAEGDPD   75 (167)
T ss_dssp             EES-T-TS--HHHHHHHHHHTS------SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-SEE-SS-EEEE----
T ss_pred             CcccC-CChhHHHHHHHHHHcCC----CCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeecCCCceeEEeeecCC
Confidence            89999 68  66533332 3444    3489999999997654321        1 348899999988334333322222


Q ss_pred             CCcchhhcccCCccccccccCCCCCCCCCcceeecccHHHHHhhcCCCCCeEEEEeeccchhhhhHHHHHhcCCc--ccc
Q 010086          392 PDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAI--CLI  469 (518)
Q Consensus       392 ~~~~~~~~~~g~~~i~p~~~~~~~~~~g~~~~v~~vd~s~wl~~~v~~~D~VVlKMDIEGaE~~vL~~l~~~g~i--~~I  469 (518)
                      ....        .+..+       .......+|+++.+.+++++.....|  +|||||||+|+++|+.+.+  .+  +.+
T Consensus        76 ~~~~--------~~~~~-------~~~~~~~~v~~~~ld~~~~~~~~~id--~lkiDiEG~E~~vL~g~~~--~l~~~~~  136 (167)
T PF05050_consen   76 GSSS--------STVEP-------NDEGGEVEVPVITLDDILEENIPRID--LLKIDIEGAELEVLKGARE--LLKKCRP  136 (167)
T ss_dssp             -------------------------------EEEEE-HHHH-SS-----S--EEEE--SS-HHHHHHTTHH--HHHHH--
T ss_pred             CCce--------eeecc-------cCCCceEEEEEEEhHHHHhhcCCccE--EEEEeCCCCHHHHhhCCcc--cHhHcCc
Confidence            1110        11111       01245577999999999887733334  7999999999999987533  34  457


Q ss_pred             cEEEEEeecccccccCCCCCCCcccccHHHHHHHHHHHhhCCeee
Q 010086          470 DEIFLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLV  514 (518)
Q Consensus       470 DeLfvE~H~~~~~~~~~g~~~~~~~~~~~~cl~L~~~LR~~Gv~v  514 (518)
                      ..+ +|+|... ..    .     +   ....+++.-|++.|+.+
T Consensus       137 ~~i-~E~~~~~-~~----~-----~---~~~~~i~~~L~~~Gy~~  167 (167)
T PF05050_consen  137 KVI-VEIHHNH-YG----R-----Q---ESFREILDFLRDHGYRL  167 (167)
T ss_dssp             EEE-EE--S------------------------------------
T ss_pred             EEE-EEEcCCc-cc----c-----c---cccccccccccccccCC
Confidence            778 9999864 11    1     0   24455777788888753

; PDB: 2PY6_A.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.50  E-value=3.8e-14  Score=129.42  Aligned_cols=104  Identities=22%  Similarity=0.395  Sum_probs=82.8

Q ss_pred             HHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC-----CcEEeccCCCCCCCCCceeEEEEcC
Q 010086          102 SSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK-----PLVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       102 ~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~-----~l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      ..++..+...  .+++.+|||||||+|..+..+++.|. +++|+|+++..     ......+....++++++||+|+|..
T Consensus        10 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~   86 (161)
T PF13489_consen   10 ADLLERLLPR--LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICND   86 (161)
T ss_dssp             HHHHHHHHTC--TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEES
T ss_pred             HHHHHHHhcc--cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHH
Confidence            3444444432  57889999999999999999988885 99999997421     1122334456678899999999999


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      + |+|++||..+++++.|+|||||++++.+...
T Consensus        87 ~-l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   87 V-LEHLPDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             S-GGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             H-HhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            8 9999999999999999999999999987543

...

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.48  E-value=1.5e-13  Score=142.52  Aligned_cols=93  Identities=16%  Similarity=0.228  Sum_probs=80.7

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      .++.+|||||||+|..+..|++.| .+|+|||.++.                ...++.++++++|+++++||+|++..+ 
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v-  207 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV-  207 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH-
Confidence            357799999999999999998877 69999999841                122457888999999999999999998 


Q ss_pred             eeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          179 LEKASKPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      ++|+.+|..+++|+.|+|||||.+++.+...
T Consensus       208 LeHv~d~~~~L~~l~r~LkPGG~liist~nr  238 (322)
T PLN02396        208 IEHVANPAEFCKSLSALTIPNGATVLSTINR  238 (322)
T ss_pred             HHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence            9999999999999999999999999986543

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.46  E-value=4.8e-13  Score=133.35  Aligned_cols=117  Identities=15%  Similarity=0.188  Sum_probs=92.2

Q ss_pred             cCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------CCcEEec
Q 010086           89 YTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------KPLVISG  157 (518)
Q Consensus        89 w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------~~l~~~~  157 (518)
                      |+...+.+....-....+++++.-.++++.+|||||||+|..+..+++. +..+++|+|+++.          ...++.+
T Consensus         4 w~~~~Y~~~~~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~   83 (258)
T PRK01683          4 WNPSLYLKFEDERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA   83 (258)
T ss_pred             CCHHHHHHHHHHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC
Confidence            7877777755443445556666555678899999999999999888764 3468999999842          1235678


Q ss_pred             cCCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          158 EGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       158 da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      |+..++ ++++||+|++..+ |||+.++.++++++.|+|||||++++.+.
T Consensus        84 d~~~~~-~~~~fD~v~~~~~-l~~~~d~~~~l~~~~~~LkpgG~~~~~~~  131 (258)
T PRK01683         84 DIASWQ-PPQALDLIFANAS-LQWLPDHLELFPRLVSLLAPGGVLAVQMP  131 (258)
T ss_pred             chhccC-CCCCccEEEEccC-hhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence            887765 5679999999997 99999999999999999999999998753

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.43  E-value=1.2e-12  Score=141.93  Aligned_cols=89  Identities=16%  Similarity=0.160  Sum_probs=74.0

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCC--CCCCCCCceeEEEEcCcee
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGH--RIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~--~LPf~D~SFD~V~s~~~~l  179 (518)
                      .++.+|||||||+|..+..|++.+ .+++|+|+++.             ...++++|+.  .+||++++||+|++..+ +
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~-l  113 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWL-L  113 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhh-H
Confidence            456799999999999999898775 69999998741             1124567764  57899999999999987 9


Q ss_pred             eccCCh--HHHHHHHHhcccCCcEEEEE
Q 010086          180 EKASKP--LDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       180 ~~~~dp--~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +|+.++  ..+++++.|+|||||++++.
T Consensus       114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336        114 MYLSDKEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             HhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            999874  57899999999999999885

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.41  E-value=2.1e-13  Score=134.29  Aligned_cols=91  Identities=20%  Similarity=0.202  Sum_probs=79.0

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCCCc--------------EEeccCCCCCCCCCceeEEEEcCceeec
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPL--------------VISGEGHRIPFDGNTFDFVFVGGARLEK  181 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~~l--------------~~~~da~~LPf~D~SFD~V~s~~~~l~~  181 (518)
                      +|.+|||||||.|.+++.|++.| .+|+|+|+++.+..              ..+...++|-...++||+|+|..+ ++|
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEV-lEH  136 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEV-LEH  136 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhH-HHc
Confidence            78899999999999999999999 89999999863211              235566777666689999999998 999


Q ss_pred             cCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          182 ASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       182 ~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      ++||+.+++.+.+.+||||.+++.+-.
T Consensus       137 v~dp~~~~~~c~~lvkP~G~lf~STin  163 (243)
T COG2227         137 VPDPESFLRACAKLVKPGGILFLSTIN  163 (243)
T ss_pred             cCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence            999999999999999999999998644

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.41  E-value=1.2e-12  Score=131.99  Aligned_cols=97  Identities=20%  Similarity=0.205  Sum_probs=79.1

Q ss_pred             HHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086          109 ISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       109 ~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      ++.-.++++.+|||||||+|..+..+++....+|+|+|+++.             ...++.+|+.++||++++||+|++.
T Consensus        45 l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~  124 (263)
T PTZ00098         45 LSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSR  124 (263)
T ss_pred             HHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEh
Confidence            333346889999999999999888776532259999999741             1234578888999999999999998


Q ss_pred             CceeeccC--ChHHHHHHHHhcccCCcEEEEEe
Q 010086          176 GARLEKAS--KPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       176 ~~~l~~~~--dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .+ ++|+.  ++..+++++.|+|||||.+++..
T Consensus       125 ~~-l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d  156 (263)
T PTZ00098        125 DA-ILHLSYADKKKLFEKCYKWLKPNGILLITD  156 (263)
T ss_pred             hh-HHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            86 88876  77899999999999999999874

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.40  E-value=1.5e-12  Score=127.43  Aligned_cols=93  Identities=26%  Similarity=0.374  Sum_probs=79.0

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      .++++.+|||+|||+|..+..+.+. + ..+++|+|+++.               ...++.+|++.+|+++++||+|++.
T Consensus        42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  121 (231)
T TIGR02752        42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG  121 (231)
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence            4578899999999999999888763 3 358999999731               1234678999999999999999998


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .+ ++|++++.++++|+.|+|||||.+++..
T Consensus       122 ~~-l~~~~~~~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       122 FG-LRNVPDYMQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             cc-cccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence            87 9999999999999999999999988764

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00452 methyltransferase, putative

Probab=99.40  E-value=1.6e-12  Score=134.23  Aligned_cols=91  Identities=19%  Similarity=0.197  Sum_probs=75.8

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      ..++.+|||||||+|..+..+...|...|+|||.|+.                ...+...+.+++|+. ++||+|+|.++
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv  197 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV  197 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence            3467899999999999988887777668999998751                012345677888875 48999999998


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                       ++|..+|..+++|++|+|||||.+++.+
T Consensus       198 -L~H~~dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       198 -LYHRKSPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             -hhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence             9999999999999999999999999864

Known examples to date are restricted to the proteobacteria.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.38  E-value=2e-12  Score=129.31  Aligned_cols=93  Identities=17%  Similarity=0.194  Sum_probs=79.0

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCC-CCCCCceeEEEEcCc
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRI-PFDGNTFDFVFVGGA  177 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~L-Pf~D~SFD~V~s~~~  177 (518)
                      .++.+|||+|||+|..+..|++.| .+|+|+|+|+.                ...++++++.++ ++++++||+|++..+
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v  121 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV  121 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence            456899999999999999998887 69999999841                112467888777 478899999999998


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                       ++|+.+|..+++++.|+|||||++++.....
T Consensus       122 -l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~  152 (255)
T PRK11036        122 -LEWVADPKSVLQTLWSVLRPGGALSLMFYNA  152 (255)
T ss_pred             -HHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence             9999999999999999999999998876443

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.38  E-value=1.8e-12  Score=134.47  Aligned_cols=89  Identities=22%  Similarity=0.301  Sum_probs=77.3

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      ++.+|||||||+|..+..+++.|...|+|+|.|+.                ...++.++.+++|+ +++||+|+|..+ +
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v-l  199 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV-L  199 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh-h
Confidence            57899999999999998888887667999998741                12245788899999 889999999998 9


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +|..+|..++++++|+|||||.+++..
T Consensus       200 ~H~~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        200 YHRRSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             hccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            999999999999999999999998863

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.37  E-value=3e-12  Score=138.79  Aligned_cols=98  Identities=16%  Similarity=0.182  Sum_probs=81.9

Q ss_pred             HHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEE
Q 010086          108 LISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVF  173 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~  173 (518)
                      +++.-.++++.+|||||||+|..+..|++....+++|+|+|+.              ...+..+|..++||++++||+|+
T Consensus       258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  337 (475)
T PLN02336        258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIY  337 (475)
T ss_pred             HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEE
Confidence            4444446778899999999999888777642258999999831              12346789999999999999999


Q ss_pred             EcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      |..+ ++|+.+|.++++|++|+|||||.+++..
T Consensus       338 s~~~-l~h~~d~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        338 SRDT-ILHIQDKPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             ECCc-ccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            9987 9999999999999999999999999874

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.33  E-value=1.2e-11  Score=119.26  Aligned_cols=115  Identities=17%  Similarity=0.260  Sum_probs=83.0

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      ..++.+|||+|||+|..+..|++.| .+|+|+|+|+.               ......+|..+++++ ++||+|+|..+ 
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-  104 (197)
T PRK11207         28 VVKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVV-  104 (197)
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecc-
Confidence            3456899999999999999998887 59999999842               112345777777775 57999999987 


Q ss_pred             eeccC--ChHHHHHHHHhcccCCcEEEE-EecC-CC---------ccCchhHhhhccCccEEEEec
Q 010086          179 LEKAS--KPLDFASEIVRTLKPEGFAVV-HVRA-KD---------EYSFNSFLDLFNSCKLVKSRD  231 (518)
Q Consensus       179 l~~~~--dp~~~l~Ei~RVLKPGG~lvi-~~~~-~~---------~~s~~~~~~lf~~~~~v~~~~  231 (518)
                      +||+.  +...+++++.|+|||||++++ .... .+         .++...+.++|..+++++..+
T Consensus       105 ~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~  170 (197)
T PRK11207        105 LMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWEMVKYNE  170 (197)
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhCCCeEEEeeC
Confidence            88765  346889999999999998654 3211 11         123344566677777666543

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.32  E-value=1.4e-11  Score=120.27  Aligned_cols=98  Identities=13%  Similarity=-0.012  Sum_probs=75.5

Q ss_pred             CCCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----CCcEEeccCCCCC--------CCCCceeEEEEcCc
Q 010086          112 GYLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----KPLVISGEGHRIP--------FDGNTFDFVFVGGA  177 (518)
Q Consensus       112 gll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----~~l~~~~da~~LP--------f~D~SFD~V~s~~~  177 (518)
                      ++++++.+|||||||||..+..+.+. + ...|+|||+++.    ...++++|+.+.+        +++++||+|+|..+
T Consensus        47 ~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~  126 (209)
T PRK11188         47 KLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA  126 (209)
T ss_pred             ccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence            46788999999999999999877664 3 258999999852    1235688888863        78999999999765


Q ss_pred             eeeccCCh-----------HHHHHHHHhcccCCcEEEEEecCCC
Q 010086          178 RLEKASKP-----------LDFASEIVRTLKPEGFAVVHVRAKD  210 (518)
Q Consensus       178 ~l~~~~dp-----------~~~l~Ei~RVLKPGG~lvi~~~~~~  210 (518)
                       .++..+|           ..+++++.|+|||||.+++.+...+
T Consensus       127 -~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~  169 (209)
T PRK11188        127 -PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE  169 (209)
T ss_pred             -CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence             4443332           3578999999999999999765443

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.32  E-value=1.3e-11  Score=118.98  Aligned_cols=114  Identities=11%  Similarity=0.194  Sum_probs=83.8

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARLE  180 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~  180 (518)
                      .++.+|||+|||+|..+..|++.| .+|+|+|+++.              ......+|....+++ ++||+|++..+ |+
T Consensus        29 ~~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~~  105 (195)
T TIGR00477        29 VAPCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVV-FM  105 (195)
T ss_pred             CCCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecc-cc
Confidence            346799999999999999998887 69999999842              112234566666664 68999999887 88


Q ss_pred             ccCC--hHHHHHHHHhcccCCcEEEEEec-CCC----------ccCchhHhhhccCccEEEEec
Q 010086          181 KASK--PLDFASEIVRTLKPEGFAVVHVR-AKD----------EYSFNSFLDLFNSCKLVKSRD  231 (518)
Q Consensus       181 ~~~d--p~~~l~Ei~RVLKPGG~lvi~~~-~~~----------~~s~~~~~~lf~~~~~v~~~~  231 (518)
                      |+..  ....++++.|+|||||++++... ..+          .++...+..+|..+++++...
T Consensus       106 ~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~~~~~~~~e  169 (195)
T TIGR00477       106 FLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYADWELLKYNE  169 (195)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCCCeEEEeec
Confidence            8753  45789999999999998555421 111          134455777788888888765

Part of a tellurite-reducing operon tehA and tehB

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.31  E-value=9.2e-12  Score=129.88  Aligned_cols=91  Identities=19%  Similarity=0.221  Sum_probs=77.2

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC------------CCcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086          114 LSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS------------KPLVISGEGHRIPFDGNTFDFVFVGGARLE  180 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~  180 (518)
                      ..++.+|||||||+|..+..+.+ .+..+++|+|+++.            ...++.+|++++||++++||+|++..+ ++
T Consensus       111 ~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~-L~  189 (340)
T PLN02490        111 SDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGS-IE  189 (340)
T ss_pred             CCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcCh-hh
Confidence            35678999999999998877765 34468999998741            123568899999999999999999987 99


Q ss_pred             ccCChHHHHHHHHhcccCCcEEEEE
Q 010086          181 KASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       181 ~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |++++.++++|+.|+|||||.+++.
T Consensus       190 ~~~d~~~~L~e~~rvLkPGG~LvIi  214 (340)
T PLN02490        190 YWPDPQRGIKEAYRVLKIGGKACLI  214 (340)
T ss_pred             hCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            9999999999999999999998775

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.30  E-value=1.9e-11  Score=118.80  Aligned_cols=91  Identities=22%  Similarity=0.261  Sum_probs=77.7

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC-----------CCcEEeccCCCCCCCCCceeEEEEcCceeeccC
Q 010086          116 QSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS-----------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKAS  183 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~-----------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~  183 (518)
                      .+.+|||+|||+|..+..+.+.+ ..+++|+|+++.           ...++.+|..++|+++++||+|++..+ ++|..
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~-l~~~~  112 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLA-LQWCD  112 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhh-hhhcc
Confidence            45789999999999998887765 357899998741           123567899999999999999999997 99999


Q ss_pred             ChHHHHHHHHhcccCCcEEEEEec
Q 010086          184 KPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       184 dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++..++.++.|+|||||++++...
T Consensus       113 ~~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072       113 DLSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             CHHHHHHHHHHHcCCCcEEEEEeC
Confidence            999999999999999999998753

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.30  E-value=7.4e-12  Score=115.22  Aligned_cols=91  Identities=23%  Similarity=0.389  Sum_probs=76.7

Q ss_pred             CCCCeEEEEcCCCCHhHHHHH-hcC-CCcEEEEecCCC--------------C-CcEEeccCCCCC--CCCCceeEEEEc
Q 010086          115 SQSAKSLCVETQYGQDVFALK-EIG-VEDSIGIFKKSS--------------K-PLVISGEGHRIP--FDGNTFDFVFVG  175 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~-~~g-~~~v~gID~s~~--------------~-~l~~~~da~~LP--f~D~SFD~V~s~  175 (518)
                      +.+.+|||+|||+|..+..|+ +.+ ..+++|+|+++.              + ..+.++|..++|  |+ +.||+|++.
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~   80 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN   80 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence            467899999999999998888 443 368999999841              1 245789999988  87 999999999


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      .+ ++|+.++..+++++.|+|||||++++...
T Consensus        81 ~~-l~~~~~~~~~l~~~~~~lk~~G~~i~~~~  111 (152)
T PF13847_consen   81 GV-LHHFPDPEKVLKNIIRLLKPGGILIISDP  111 (152)
T ss_dssp             ST-GGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             Cc-hhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence            98 99999999999999999999999988754

...

>PRK08317 hypothetical protein; Provisional

Probab=99.29  E-value=2.1e-11  Score=118.21  Aligned_cols=98  Identities=23%  Similarity=0.297  Sum_probs=81.1

Q ss_pred             HHHcCCCCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeE
Q 010086          108 LISEGYLSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDF  171 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~  171 (518)
                      +.+...+.++.+|||+|||+|..+..+++.  ...+++|+|+++.              ...+..+|+..+|+++++||+
T Consensus        11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   90 (241)
T PRK08317         11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDA   90 (241)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceE
Confidence            334445678899999999999998877764  2368999999742              122456888889999999999


Q ss_pred             EEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      |++..+ ++|+.++..+++++.++|||||.+++..
T Consensus        91 v~~~~~-~~~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         91 VRSDRV-LQHLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             EEEech-hhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence            999997 9999999999999999999999998864

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.28  E-value=1.2e-11  Score=124.41  Aligned_cols=91  Identities=21%  Similarity=0.269  Sum_probs=76.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHh-cCC-CcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKE-IGV-EDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~-~g~-~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      ++++.+|||||||+|..+..+++ .|. .+++|+|+++.               ...++.++.+++|+++++||+|++..
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            67899999999999987755544 343 47999999741               11245789999999999999999998


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      + ++|.+++.++++|+.|+|||||++++.
T Consensus       155 v-~~~~~d~~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        155 V-INLSPDKERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             c-ccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence            7 999999999999999999999999886

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.24  E-value=1.5e-11  Score=118.38  Aligned_cols=87  Identities=16%  Similarity=0.209  Sum_probs=74.7

Q ss_pred             eEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCc---EEeccCCCCC-CCCCceeEEEEcCceeec
Q 010086          119 KSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPL---VISGEGHRIP-FDGNTFDFVFVGGARLEK  181 (518)
Q Consensus       119 rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l---~~~~da~~LP-f~D~SFD~V~s~~~~l~~  181 (518)
                      .+|+||||||.....+.......||++|.++.             +..   ++.+++++|| ++|+|+|.|++..+ |..
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv-LCS  157 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV-LCS  157 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE-Eec
Confidence            46999999999988776444479999998741             222   5689999999 89999999999998 999


Q ss_pred             cCChHHHHHHHHhcccCCcEEEEEe
Q 010086          182 ASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       182 ~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +.+|.+.++|+.|+|||||++++.-
T Consensus       158 ve~~~k~L~e~~rlLRpgG~iifiE  182 (252)
T KOG4300|consen  158 VEDPVKQLNEVRRLLRPGGRIIFIE  182 (252)
T ss_pred             cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            9999999999999999999988763

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.23  E-value=1.4e-10  Score=111.65  Aligned_cols=127  Identities=17%  Similarity=0.163  Sum_probs=87.3

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      .++++.+|||+|||+|..+..++. .+..+|+|+|+++.               ...++.+|+.+++. +++||+|++..
T Consensus        42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~  120 (187)
T PRK00107         42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA  120 (187)
T ss_pred             hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence            356689999999999998877765 33469999999841               12346788888887 88999999965


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccC--ccEEEEeccCCCCCCccceeEEEEee
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNS--CKLVKSRDIDGIDSSLPYIREIVLKK  249 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~--~~~v~~~~v~~~~~~~p~~~~vv~kK  249 (518)
                        +   .++..+++++.|+|||||++++...........+..+. ..  -..++...+.|.+.. |.+  +++||
T Consensus       121 --~---~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~--~~~~~  186 (187)
T PRK00107        121 --V---ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKA-LGGKVEEVIELTLPGLDGE-RHL--VIIRK  186 (187)
T ss_pred             --c---cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHh-cCceEeeeEEEecCCCCCc-EEE--EEEec
Confidence              3   35778999999999999999888654332211222221 12  145666666666542 333  45565

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.22  E-value=7.1e-11  Score=119.35  Aligned_cols=86  Identities=21%  Similarity=0.251  Sum_probs=67.5

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-C---CCcEEEEecCCC---------C-CcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-G---VEDSIGIFKKSS---------K-PLVISGEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g---~~~v~gID~s~~---------~-~l~~~~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      ..++.+|||+|||+|..+..+.+. +   ...++|+|+|+.         + ..+..+|+.++||++++||+|++..+  
T Consensus        83 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~--  160 (272)
T PRK11088         83 DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA--  160 (272)
T ss_pred             CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC--
Confidence            345678999999999998877653 1   137899999842         1 23568899999999999999998653  


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                           | ..++|+.|+|||||++++...
T Consensus       161 -----~-~~~~e~~rvLkpgG~li~~~p  182 (272)
T PRK11088        161 -----P-CKAEELARVVKPGGIVITVTP  182 (272)
T ss_pred             -----C-CCHHHHHhhccCCCEEEEEeC
Confidence                 2 236899999999999988753

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.22  E-value=4.2e-11  Score=103.54  Aligned_cols=89  Identities=21%  Similarity=0.292  Sum_probs=67.8

Q ss_pred             CCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC----------------CCcEEeccC-CCCCCCCCceeEEEEcC-
Q 010086          116 QSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS----------------KPLVISGEG-HRIPFDGNTFDFVFVGG-  176 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~----------------~~l~~~~da-~~LPf~D~SFD~V~s~~-  176 (518)
                      |+.+|||||||+|..+..+.+ .+..+++|+|+++.                ...++++|+ ....+ .+.||+|++.. 
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~   79 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF   79 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence            678999999999999988887 24478999999841                123567888 33333 34599999988 


Q ss_pred             ceeecc---CChHHHHHHHHhcccCCcEEEEEe
Q 010086          177 ARLEKA---SKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       177 ~~l~~~---~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      . ++++   .++.++++++.+.|||||++++..
T Consensus        80 ~-~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   80 T-LHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             S-GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c-cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            4 4433   345688999999999999999864

...

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.22  E-value=2.2e-11  Score=116.80  Aligned_cols=91  Identities=21%  Similarity=0.339  Sum_probs=75.4

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------CCcEEeccCCC-C-CCCCCceeEEEEcCceeecc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------KPLVISGEGHR-I-PFDGNTFDFVFVGGARLEKA  182 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------~~l~~~~da~~-L-Pf~D~SFD~V~s~~~~l~~~  182 (518)
                      .+++|+||||+|||.|.+...|.+....+.+|||+++.        ...++++|.+. | .|+|+|||.|+.+.+ ++++
T Consensus        10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt-LQ~~   88 (193)
T PF07021_consen   10 WIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQT-LQAV   88 (193)
T ss_pred             HcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhH-HHhH
Confidence            47899999999999999999998754468999999852        22367887654 5 499999999999998 9999


Q ss_pred             CChHHHHHHHHhcccCCcEEEEEec
Q 010086          183 SKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       183 ~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      .+|+++++|+.||   |...++++.
T Consensus        89 ~~P~~vL~EmlRV---gr~~IVsFP  110 (193)
T PF07021_consen   89 RRPDEVLEEMLRV---GRRAIVSFP  110 (193)
T ss_pred             hHHHHHHHHHHHh---cCeEEEEec
Confidence            9999999999888   556777764

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.21  E-value=1.1e-10  Score=119.07  Aligned_cols=113  Identities=13%  Similarity=0.214  Sum_probs=83.9

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCceeec
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARLEK  181 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~  181 (518)
                      ++.+|||+|||+|..+..|++.| .+|+|+|+|+.              ...+...|....++ +++||+|++..+ |+|
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~v-l~~  196 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVV-LMF  196 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcch-hhh
Confidence            34599999999999999998887 69999999842              11133556666555 789999999987 888


Q ss_pred             cC--ChHHHHHHHHhcccCCcEEEEEe--cCCC---------ccCchhHhhhccCccEEEEec
Q 010086          182 AS--KPLDFASEIVRTLKPEGFAVVHV--RAKD---------EYSFNSFLDLFNSCKLVKSRD  231 (518)
Q Consensus       182 ~~--dp~~~l~Ei~RVLKPGG~lvi~~--~~~~---------~~s~~~~~~lf~~~~~v~~~~  231 (518)
                      +.  +...+++++.|+|||||++++..  ...+         .++...+..+|+++++++..+
T Consensus       197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~~~i~~~~e  259 (287)
T PRK12335        197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQDWEIVKYNE  259 (287)
T ss_pred             CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCCCEEEEEec
Confidence            75  34578999999999999965532  1111         134455777888899888765

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.17  E-value=2.1e-10  Score=112.44  Aligned_cols=116  Identities=15%  Similarity=0.134  Sum_probs=83.3

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC---------------------------CcEEeccCCCCCCC-
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK---------------------------PLVISGEGHRIPFD-  165 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~---------------------------~l~~~~da~~LPf~-  165 (518)
                      +.++.+|||+|||.|..+..|++.| .+|+|||+|+..                           ..++++|..+++.. 
T Consensus        32 ~~~~~rvLd~GCG~G~da~~LA~~G-~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        32 LPAGARVFVPLCGKSLDLAWLAEQG-HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCCeEEEeCCCchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            4577899999999999999999998 589999998530                           12357888777653 


Q ss_pred             CCceeEEEEcCceeeccCCh--HHHHHHHHhcccCCcEEEEE-ecCC------Cc--cCchhHhhhcc-CccEEEEec
Q 010086          166 GNTFDFVFVGGARLEKASKP--LDFASEIVRTLKPEGFAVVH-VRAK------DE--YSFNSFLDLFN-SCKLVKSRD  231 (518)
Q Consensus       166 D~SFD~V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~-~~~~------~~--~s~~~~~~lf~-~~~~v~~~~  231 (518)
                      .+.||.|+.... ++|++..  .+.++.+.+.|||||++++. ....      +.  ++...+.++|. .+++..+..
T Consensus       111 ~~~fD~i~D~~~-~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~~~~~  187 (213)
T TIGR03840       111 LGPVDAVYDRAA-LIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGGHYEIELLES  187 (213)
T ss_pred             CCCcCEEEechh-hccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcCCceEEEEee
Confidence            468999999876 8888533  35799999999999975444 3221      11  34445666665 456555544

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.17  E-value=3.4e-10  Score=110.18  Aligned_cols=88  Identities=23%  Similarity=0.311  Sum_probs=70.0

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------C-CcEEeccCCCCCCCCCceeEEEEcCceeecc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------K-PLVISGEGHRIPFDGNTFDFVFVGGARLEKA  182 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------~-~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~  182 (518)
                      +.++.+|||||||+|..+..|.+. +..+++|||+|+.         + ..+.++++.+ ||++++||+|++..+ |+|+
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~v-L~hl  118 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGV-LIHI  118 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECCh-hhhC
Confidence            457789999999999999888775 4479999999852         1 2356788888 999999999999997 9998


Q ss_pred             C--ChHHHHHHHHhcccCCcEEEEE
Q 010086          183 S--KPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       183 ~--dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .  +..++++|+.|++  ++.+++.
T Consensus       119 ~p~~~~~~l~el~r~~--~~~v~i~  141 (204)
T TIGR03587       119 NPDNLPTAYRELYRCS--NRYILIA  141 (204)
T ss_pred             CHHHHHHHHHHHHhhc--CcEEEEE
Confidence            5  2357889999998  4555554

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.16  E-value=1.7e-11  Score=121.87  Aligned_cols=89  Identities=22%  Similarity=0.255  Sum_probs=72.0

Q ss_pred             CCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------CCc---------EEeccCCCCCCCCCceeEEEEc
Q 010086          117 SAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------KPL---------VISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~~l---------~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      |.+|||+|||+|.+++.|++.| +.|+|||+++.            |++         ....+++.+   -+.||+|+|+
T Consensus        90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs  165 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS  165 (282)
T ss_pred             CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence            4789999999999999999999 89999999741            111         112334433   2339999999


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEEecCCC
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKD  210 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~  210 (518)
                      .+ ++|+.||..++.-+.+.|||||.+++++-.+.
T Consensus       166 ev-leHV~dp~~~l~~l~~~lkP~G~lfittinrt  199 (282)
T KOG1270|consen  166 EV-LEHVKDPQEFLNCLSALLKPNGRLFITTINRT  199 (282)
T ss_pred             HH-HHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence            98 99999999999999999999999999875543

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.16  E-value=1.5e-10  Score=115.38  Aligned_cols=90  Identities=16%  Similarity=0.192  Sum_probs=72.0

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHh---cCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKE---IGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFV  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~---~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s  174 (518)
                      ++++.+|||||||+|..+..+++   .+..+++|+|+|+.                ...++.+++.++|+++  +|+|++
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~vv~  131 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN--ASMVVL  131 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCC--CCEEeh
Confidence            56789999999999998877765   12369999999841                1235678888888864  899999


Q ss_pred             cCceeeccCCh--HHHHHHHHhcccCCcEEEEEe
Q 010086          175 GGARLEKASKP--LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       175 ~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ..+ +||++++  ..+++++.|+|||||.+++.-
T Consensus       132 ~~~-l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        132 NFT-LQFLEPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             hhH-HHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            887 8888643  478999999999999998863

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.16  E-value=3.7e-11  Score=102.31  Aligned_cols=81  Identities=21%  Similarity=0.126  Sum_probs=50.0

Q ss_pred             EEEcCCCCHhHHHHHhc-CCCcEEEEecCCCCCc---------------EEeccCCCCC--CCCCceeEEEEcCceeecc
Q 010086          121 LCVETQYGQDVFALKEI-GVEDSIGIFKKSSKPL---------------VISGEGHRIP--FDGNTFDFVFVGGARLEKA  182 (518)
Q Consensus       121 LDVGcGtG~~~~~L~~~-g~~~v~gID~s~~~~l---------------~~~~da~~LP--f~D~SFD~V~s~~~~l~~~  182 (518)
                      ||||||+|..+..+.+. ...+++|+|+|+....               ....+..++.  .+.++||+|++.++ +||+
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v-l~~l   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNV-LHHL   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-T-TS--
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhh-Hhhh
Confidence            79999999999777654 4479999999964210               1122222221  12369999999998 9999


Q ss_pred             CChHHHHHHHHhcccCCcEE
Q 010086          183 SKPLDFASEIVRTLKPEGFA  202 (518)
Q Consensus       183 ~dp~~~l~Ei~RVLKPGG~l  202 (518)
                      +++..+++.+.+.|||||++
T Consensus        80 ~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhHHHHHHHHHHHcCCCCCC
Confidence            99999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.15  E-value=1.1e-10  Score=118.88  Aligned_cols=89  Identities=25%  Similarity=0.320  Sum_probs=75.2

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCc-EEe-ccCCCCCCCCCceeEEEEcCcee
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPL-VIS-GEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l-~~~-~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      .|.+|||||||+|..+..+...|...|+|||.+..              ... ... -..++||. .++||.|||.++ |
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGV-L  192 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGV-L  192 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeee-h
Confidence            57899999999999998888888789999998631              111 122 35677887 789999999998 9


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      -|..+|...+.++...|||||.+++.+
T Consensus       193 YHrr~Pl~~L~~Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  193 YHRRSPLDHLKQLKDSLRPGGELVLET  219 (315)
T ss_pred             hccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence            999999999999999999999999874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.13  E-value=1.7e-10  Score=117.29  Aligned_cols=95  Identities=22%  Similarity=0.192  Sum_probs=67.6

Q ss_pred             HHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCce
Q 010086          107 DLISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTF  169 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SF  169 (518)
                      .++++.-+++|.+|||||||-|..+..+++. | .+|+||.+|+.                ...+...|..+++.   +|
T Consensus        53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~f  128 (273)
T PF02353_consen   53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KF  128 (273)
T ss_dssp             HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-
T ss_pred             HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CC
Confidence            3455556899999999999999999888876 7 69999999841                12245677776654   99


Q ss_pred             eEEEEcCceeeccC--ChHHHHHHHHhcccCCcEEEEEe
Q 010086          170 DFVFVGGARLEKAS--KPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       170 D~V~s~~~~l~~~~--dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      |.|+|..+ ++|+.  +-..+++.+.|.|||||.++++.
T Consensus       129 D~IvSi~~-~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  129 DRIVSIEM-FEHVGRKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             SEEEEESE-GGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             CEEEEEec-hhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence            99999998 99994  44689999999999999998873

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00740 methyltransferase, putative

Probab=99.13  E-value=1.9e-10  Score=113.70  Aligned_cols=90  Identities=12%  Similarity=0.188  Sum_probs=72.5

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc---CCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI---GVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFV  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~---g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s  174 (518)
                      +.++.+|||||||+|..+..+.+.   +..+++|+|+|+.                ...++.+|...+|+++  +|+|++
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~d~v~~  128 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN--ASMVIL  128 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCC--CCEEee
Confidence            467889999999999998777653   2368999999731                1235688999988864  899999


Q ss_pred             cCceeeccCC--hHHHHHHHHhcccCCcEEEEEe
Q 010086          175 GGARLEKASK--PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       175 ~~~~l~~~~d--p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ..+ +||+.+  +..++++++|+|||||.+++..
T Consensus       129 ~~~-l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       129 NFT-LQFLPPEDRIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             ecc-hhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence            887 899863  4679999999999999998873

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.12  E-value=6e-11  Score=101.74  Aligned_cols=81  Identities=26%  Similarity=0.381  Sum_probs=63.1

Q ss_pred             EEEEcCCCCHhHHHHHhc---CC-CcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCceeec
Q 010086          120 SLCVETQYGQDVFALKEI---GV-EDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARLEK  181 (518)
Q Consensus       120 vLDVGcGtG~~~~~L~~~---g~-~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~  181 (518)
                      |||+|||+|..+..+.+.   |. .+++|+|+++.              ...++++|+.++|+.+++||+|++....++|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            799999999999888765   32 69999999831              2356799999999999999999995433888


Q ss_pred             cCCh--HHHHHHHHhcccCCc
Q 010086          182 ASKP--LDFASEIVRTLKPEG  200 (518)
Q Consensus       182 ~~dp--~~~l~Ei~RVLKPGG  200 (518)
                      +.++  .++++++.++|||||
T Consensus        81 ~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   81 LSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCC
Confidence            7644  468999999999998

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.12  E-value=2.2e-10  Score=115.80  Aligned_cols=103  Identities=15%  Similarity=0.125  Sum_probs=74.8

Q ss_pred             HHHHHHHHcCCCCCCCeEEEEcCCCCHhH----HHHHhcC------CCcEEEEecCCC----------C-----------
Q 010086          103 SVFQDLISEGYLSQSAKSLCVETQYGQDV----FALKEIG------VEDSIGIFKKSS----------K-----------  151 (518)
Q Consensus       103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~----~~L~~~g------~~~v~gID~s~~----------~-----------  151 (518)
                      .++..+.+.....++.+|||+|||||..+    ..+.+.+      ..+++|+|+|+.          +           
T Consensus        86 ~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~  165 (264)
T smart00138       86 KVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKAL  165 (264)
T ss_pred             HHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHH
Confidence            33444444322345579999999999853    3344421      247999999841          0           


Q ss_pred             ---------------------CcEEeccCCCCCCCCCceeEEEEcCceeeccCChH--HHHHHHHhcccCCcEEEEEe
Q 010086          152 ---------------------PLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPL--DFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       152 ---------------------~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~~  206 (518)
                                           ..+.++|..+.|+++++||+|+|.++ |+|++++.  +++++++|+|||||++++.-
T Consensus       166 ~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnv-l~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      166 LARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNV-LIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             HhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechh-HHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence                                 12346788888888999999999998 99987554  79999999999999999854

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.12  E-value=8.3e-10  Score=106.40  Aligned_cols=92  Identities=24%  Similarity=0.289  Sum_probs=77.7

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCC--CcEEEEecCCC-------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGV--EDSIGIFKKSS-------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~--~~v~gID~s~~-------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      ..++.+|||+|||+|..+..+.+.+.  .+++|+|+++.             ...+..+|..++|+++++||+|++..+ 
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~-  115 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFG-  115 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeee-
Confidence            34788999999999999988876543  48999999731             134567888899999999999999887 


Q ss_pred             eeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          179 LEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ++|..++..+++++.+.|||||++++..
T Consensus       116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       116 LRNVTDIQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             eCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence            9999999999999999999999988753

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK06922 hypothetical protein; Provisional

Probab=99.11  E-value=2.7e-10  Score=126.50  Aligned_cols=91  Identities=16%  Similarity=0.136  Sum_probs=73.8

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC--------------CCcEEeccCCCCC--CCCCceeEEEEcCc
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS--------------KPLVISGEGHRIP--FDGNTFDFVFVGGA  177 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~--------------~~l~~~~da~~LP--f~D~SFD~V~s~~~  177 (518)
                      .++.+|||||||+|..+..+++. +..+++|+|+|+.              ...++++|+.++|  |++++||+|+++..
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v  496 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI  496 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence            46889999999999988777653 3469999999852              1124678988898  89999999999886


Q ss_pred             eeecc-------------CChHHHHHHHHhcccCCcEEEEEe
Q 010086          178 RLEKA-------------SKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       178 ~l~~~-------------~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                       +||+             .++.++++++.|+|||||.+++..
T Consensus       497 -LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        497 -LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             -HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence             7765             245789999999999999998864

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.10  E-value=7.8e-10  Score=108.86  Aligned_cols=118  Identities=14%  Similarity=0.136  Sum_probs=85.4

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC---------------------------CcEEeccCCCCCCCC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK---------------------------PLVISGEGHRIPFDG  166 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~---------------------------~l~~~~da~~LPf~D  166 (518)
                      +.++.+|||+|||.|..+..|++.| .+|+|||+|+..                           ..+.++|..+++..+
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~G-~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~  113 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQG-HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD  113 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhCC-CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence            4567899999999999999999998 589999998420                           112468888875443


Q ss_pred             -CceeEEEEcCceeeccCCh--HHHHHHHHhcccCCcEEEE-Ee--cC----CC--ccCchhHhhhccC-ccEEEEeccC
Q 010086          167 -NTFDFVFVGGARLEKASKP--LDFASEIVRTLKPEGFAVV-HV--RA----KD--EYSFNSFLDLFNS-CKLVKSRDID  233 (518)
Q Consensus       167 -~SFD~V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi-~~--~~----~~--~~s~~~~~~lf~~-~~~v~~~~v~  233 (518)
                       ..||+|+.... |+|++..  .+.++.+.+.|||||++++ ..  ..    ++  .++...+.++|.. +++..+....
T Consensus       114 ~~~fd~v~D~~~-~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~~~i~~~~~~~  192 (218)
T PRK13255        114 LADVDAVYDRAA-LIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGCFEIELLERQD  192 (218)
T ss_pred             CCCeeEEEehHh-HhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCCceEEEeeecc
Confidence             68999999886 8888533  3689999999999997443 32  11    11  1355557777776 6777666543

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.08  E-value=2.8e-10  Score=109.13  Aligned_cols=84  Identities=19%  Similarity=0.319  Sum_probs=68.9

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------CCcEEeccCCC-C-CCCCCceeEEEEcCceeeccC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------KPLVISGEGHR-I-PFDGNTFDFVFVGGARLEKAS  183 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------~~l~~~~da~~-L-Pf~D~SFD~V~s~~~~l~~~~  183 (518)
                      ++++.+|||||||+|..+..+++.+...++|+|+++.        ...++.+|+.+ + ++++++||+|++..+ |+|+.
T Consensus        11 i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~-l~~~~   89 (194)
T TIGR02081        11 IPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQT-LQATR   89 (194)
T ss_pred             cCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhH-hHcCc
Confidence            4678899999999999998887644457899998742        12356777765 5 588999999999998 99999


Q ss_pred             ChHHHHHHHHhcccC
Q 010086          184 KPLDFASEIVRTLKP  198 (518)
Q Consensus       184 dp~~~l~Ei~RVLKP  198 (518)
                      +|..+++|+.|++|+
T Consensus        90 d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        90 NPEEILDEMLRVGRH  104 (194)
T ss_pred             CHHHHHHHHHHhCCe
Confidence            999999999998775

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.08  E-value=3.3e-10  Score=110.39  Aligned_cols=86  Identities=24%  Similarity=0.321  Sum_probs=70.7

Q ss_pred             eEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCceeec
Q 010086          119 KSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGARLEK  181 (518)
Q Consensus       119 rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~  181 (518)
                      +|||||||+|..+..+.+. +..+++|+|+|+.                ...+..+|..+.|+++ +||+|++..+ ++|
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~-~fD~I~~~~~-l~~   79 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPD-TYDLVFGFEV-IHH   79 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCC-CCCEeehHHH-HHh
Confidence            7999999999988877764 3368999999741                1134567776667764 8999999987 999


Q ss_pred             cCChHHHHHHHHhcccCCcEEEEEe
Q 010086          182 ASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       182 ~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +.++..+++++.|+|||||++++..
T Consensus        80 ~~~~~~~l~~~~~~LkpgG~l~i~~  104 (224)
T smart00828       80 IKDKMDLFSNISRHLKDGGHLVLAD  104 (224)
T ss_pred             CCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            9999999999999999999998864

>PRK06202 hypothetical protein; Provisional

Probab=99.06  E-value=8.5e-10  Score=108.65  Aligned_cols=90  Identities=11%  Similarity=0.063  Sum_probs=69.1

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHh----cCC-CcEEEEecCCC------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          115 SQSAKSLCVETQYGQDVFALKE----IGV-EDSIGIFKKSS------------KPLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~----~g~-~~v~gID~s~~------------~~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      .++.+|||||||+|..+..|.+    .|. .+++|+|+++.            ...+...++..+|+++++||+|+++.+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~  138 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF  138 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence            4667999999999998877654    242 48999999842            112346677888889999999999997


Q ss_pred             eeeccCChH--HHHHHHHhcccCCcEEEEEe
Q 010086          178 RLEKASKPL--DFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       178 ~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~~  206 (518)
                       |||+++++  .+++|+.|++| |++++..+
T Consensus       139 -lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl  167 (232)
T PRK06202        139 -LHHLDDAEVVRLLADSAALAR-RLVLHNDL  167 (232)
T ss_pred             -eecCChHHHHHHHHHHHHhcC-eeEEEecc
Confidence             99998864  69999999999 44443333

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.05  E-value=1.7e-09  Score=105.26  Aligned_cols=91  Identities=23%  Similarity=0.311  Sum_probs=76.9

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcC--CCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIG--VEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g--~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      ..++.+|||+|||+|..+..+.+.+  ..+++|+|+++.                ...++.+|..++|+++++||+|++.
T Consensus        49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~  128 (239)
T PRK00216         49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA  128 (239)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe
Confidence            4467899999999999998887654  479999998731                1234578888889989999999998


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .+ +++..++...++++.+.|||||++++.
T Consensus       129 ~~-l~~~~~~~~~l~~~~~~L~~gG~li~~  157 (239)
T PRK00216        129 FG-LRNVPDIDKALREMYRVLKPGGRLVIL  157 (239)
T ss_pred             cc-cccCCCHHHHHHHHHHhccCCcEEEEE
Confidence            87 999999999999999999999998775

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.03  E-value=8.9e-10  Score=117.00  Aligned_cols=95  Identities=16%  Similarity=0.188  Sum_probs=72.8

Q ss_pred             HHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------C---CcEEeccCCCCCCCCCceeEEEEc
Q 010086          108 LISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------K---PLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------~---~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      +.+...++++.+|||||||+|..+..+++....+|+|+|+|+.         .   ..+..+|...+   +++||.|+|.
T Consensus       159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~  235 (383)
T PRK11705        159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSV  235 (383)
T ss_pred             HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEe
Confidence            3343446889999999999999998787642258999999842         1   11234555544   5799999998


Q ss_pred             CceeeccCC--hHHHHHHHHhcccCCcEEEEEe
Q 010086          176 GARLEKASK--PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       176 ~~~l~~~~d--p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .. ++|+.+  +..+++++.|+|||||+++++.
T Consensus       236 ~~-~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        236 GM-FEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             Cc-hhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            87 999853  4689999999999999999874

>PRK04266 fibrillarin; Provisional

Probab=99.03  E-value=2.2e-09  Score=106.23  Aligned_cols=137  Identities=11%  Similarity=0.175  Sum_probs=85.2

Q ss_pred             hccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-------------CC
Q 010086           87 DMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-------------KP  152 (518)
Q Consensus        87 ~~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-------------~~  152 (518)
                      ..|.+..    ......++..+ +.-.++++.+|||+|||+|..+..+++. +...|+|+|+++.             ..
T Consensus        48 ~~~~~~r----~~~~~~ll~~~-~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv  122 (226)
T PRK04266         48 REWNPRR----SKLAAAILKGL-KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNI  122 (226)
T ss_pred             EEECCCc----cchHHHHHhhH-hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCc
Confidence            5666632    12233444433 2234679999999999999999888764 3358999999851             12


Q ss_pred             cEEeccCCC----CCCCCCceeEEEEcCceeeccCCh---HHHHHHHHhcccCCcEEEEEecCC--Ccc-Cc----hhHh
Q 010086          153 LVISGEGHR----IPFDGNTFDFVFVGGARLEKASKP---LDFASEIVRTLKPEGFAVVHVRAK--DEY-SF----NSFL  218 (518)
Q Consensus       153 l~~~~da~~----LPf~D~SFD~V~s~~~~l~~~~dp---~~~l~Ei~RVLKPGG~lvi~~~~~--~~~-s~----~~~~  218 (518)
                      ..+.+|+.+    .+++ ++||+|++..      .+|   ..+++|+.|+|||||.+++.+...  +.. ..    ....
T Consensus       123 ~~i~~D~~~~~~~~~l~-~~~D~i~~d~------~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~  195 (226)
T PRK04266        123 IPILADARKPERYAHVV-EKVDVIYQDV------AQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEI  195 (226)
T ss_pred             EEEECCCCCcchhhhcc-ccCCEEEECC------CChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHH
Confidence            345677754    1233 5699999743      233   346899999999999999953221  110 00    0122


Q ss_pred             hhcc--CccEEEEeccCCC
Q 010086          219 DLFN--SCKLVKSRDIDGI  235 (518)
Q Consensus       219 ~lf~--~~~~v~~~~v~~~  235 (518)
                      +++.  .|+++.......|
T Consensus       196 ~~l~~aGF~~i~~~~l~p~  214 (226)
T PRK04266        196 RKLEEGGFEILEVVDLEPY  214 (226)
T ss_pred             HHHHHcCCeEEEEEcCCCC
Confidence            3333  5777777776655

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.01  E-value=3e-09  Score=92.90  Aligned_cols=90  Identities=17%  Similarity=0.194  Sum_probs=68.1

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCC-CCCCCCceeEEEEc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHR-IPFDGNTFDFVFVG  175 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~-LPf~D~SFD~V~s~  175 (518)
                      .+.++.++||+|||+|..+..+.+. +..+++|+|+++.               ...++.+++.. ++...++||+|++.
T Consensus        16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~   95 (124)
T TIGR02469        16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIG   95 (124)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEEC
Confidence            4567789999999999999877764 3368999998741               12234566654 44555799999997


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .. .++   ..++++++.|+|||||.+++.+
T Consensus        96 ~~-~~~---~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        96 GS-GGL---LQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             Cc-chh---HHHHHHHHHHHcCCCCEEEEEe
Confidence            74 443   3578999999999999999875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.01  E-value=2.8e-09  Score=101.94  Aligned_cols=87  Identities=11%  Similarity=0.080  Sum_probs=67.4

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086          116 QSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      ++.+|||||||+|..+..++..+ ..+|+|+|.++.               ...++++|+++++ .+++||+|+|..  +
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--~  118 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--L  118 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh--h
Confidence            37899999999999887776543 358999999851               1234678888875 468999999965  4


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      ++   ....++++.|+|||||++++..+.
T Consensus       119 ~~---~~~~~~~~~~~LkpgG~lvi~~~~  144 (181)
T TIGR00138       119 AS---LNVLLELTLNLLKVGGYFLAYKGK  144 (181)
T ss_pred             hC---HHHHHHHHHHhcCCCCEEEEEcCC
Confidence            43   556789999999999999987643

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF13383 Methyltransf_22: Methyltransferase domain

Probab=98.99  E-value=1.8e-09  Score=107.81  Aligned_cols=135  Identities=17%  Similarity=0.286  Sum_probs=88.7

Q ss_pred             CceEEEEeCCCCCCcchhhhhhhhCC--CCCcceEEEEEcCCccchHhhccCCceEEEeeceeecCCceEEEecCCCCcc
Q 010086          318 NRYVYVDVGARSYGSSIGSWFKKQYP--KQNKTFDVYAIEADKTFHEEYKVKKKVKLLPYAAWVRNETLSFQINHDPDKE  395 (518)
Q Consensus       318 ~r~V~iD~GAn~~g~sv~~~F~~~YP--~~~~~f~V~afE~np~~~~~~~~~~~V~~~~~Av~~~~~tl~f~~~~~~~~~  395 (518)
                      ++-++.=+|.|. -.|...-..+.++  |     +||+|+|+..........+++++++..++.++....          
T Consensus        83 ~~C~vySfG~n~-~~sFe~~m~~~~g~~C-----~V~~FD~~~~~~~~~~~~~~~~f~~~gl~~~~~~~~----------  146 (242)
T PF13383_consen   83 DDCVVYSFGSNN-DWSFEEEMAKRTGRGC-----EVHAFDPSMQNEDQPQNSDRIHFHKLGLGSKDSESI----------  146 (242)
T ss_pred             CCeEEEEecCCC-CcHHHHHHHHhhCCCC-----eEEEECCCcccccccccchhhHHHhccccCCccccc----------
Confidence            466788889884 4345444455677  5     799999876654333344666666654432221000          


Q ss_pred             hhhcccCCccccccccCCCCCCCCCcceeecccHHHHHhhcC---CCCCeEEEEeeccchhhhhHHHHHhcCCcccccEE
Q 010086          396 VVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTV---TDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEI  472 (518)
Q Consensus       396 ~~~~~~g~~~i~p~~~~~~~~~~g~~~~v~~vd~s~wl~~~v---~~~D~VVlKMDIEGaE~~vL~~l~~~g~i~~IDeL  472 (518)
                                            ...    ....|++.++++-   +..|  ||||||||+||++|+.|++++.    +.|
T Consensus       147 ----------------------~~~----~~~tl~~i~~~lgH~~~~id--iLKiDIEG~Ew~~L~~~l~~~~----~Qi  194 (242)
T PF13383_consen  147 ----------------------NPK----LVYTLSDIMKMLGHKGREID--ILKIDIEGAEWTVLEPLLESGV----CQI  194 (242)
T ss_pred             ----------------------cch----hhccHHHHHHHhcCCCcccc--EEEEEcCccHHHHHHHHHhcCC----cEE
Confidence                                  000    0235666666652   3445  7999999999999999999888    999


Q ss_pred             EEEeecccccccCCCCCCCcccccHHHHHHHHHHHhhCCeee
Q 010086          473 FLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLV  514 (518)
Q Consensus       473 fvE~H~~~~~~~~~g~~~~~~~~~~~~cl~L~~~LR~~Gv~v  514 (518)
                      ++|+|..  +    ..        ......++..|++.|++.
T Consensus       195 ~iEiH~~--~----~~--------~~~~~~~l~~l~~~gfr~  222 (242)
T PF13383_consen  195 LIEIHGW--P----SE--------HREWYKLLQELEKAGFRL  222 (242)
T ss_pred             EEEEEeC--c----cc--------hhHHHHHHHHHHHCCcEE
Confidence            9999962  1    11        123678999999999875

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.98  E-value=5.1e-09  Score=101.71  Aligned_cols=126  Identities=17%  Similarity=0.152  Sum_probs=78.2

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCCCcEEeccCCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHh
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVR  194 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~R  194 (518)
                      +++..|-|+|||.+.++..+.+ + ..|...|+....+.+..+|..++|++|+++|+|++..+ |.- .|-..++.|+.|
T Consensus        71 ~~~~viaD~GCGdA~la~~~~~-~-~~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLS-LMG-Tn~~~fi~EA~R  146 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLAKAVPN-K-HKVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLS-LMG-TNWPDFIREANR  146 (219)
T ss_dssp             -TTS-EEEES-TT-HHHHH--S-----EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES----S-S-HHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHhccc-C-ceEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhh-hhC-CCcHHHHHHHHh
Confidence            4456899999999998877652 2 47999999877778889999999999999999998876 654 466789999999


Q ss_pred             cccCCcEEEEE-ecCCCccCchhHhhhcc--CccEEEEeccCCCCCCccceeEEEEeecc
Q 010086          195 TLKPEGFAVVH-VRAKDEYSFNSFLDLFN--SCKLVKSRDIDGIDSSLPYIREIVLKKES  251 (518)
Q Consensus       195 VLKPGG~lvi~-~~~~~~~s~~~~~~lf~--~~~~v~~~~v~~~~~~~p~~~~vv~kK~~  251 (518)
                      ||||||.+.|. +.. ...+...|.+...  .|++......+.      +.....|+|..
T Consensus       147 vLK~~G~L~IAEV~S-Rf~~~~~F~~~~~~~GF~~~~~d~~n~------~F~~f~F~K~~  199 (219)
T PF05148_consen  147 VLKPGGILKIAEVKS-RFENVKQFIKALKKLGFKLKSKDESNK------HFVLFEFKKIR  199 (219)
T ss_dssp             HEEEEEEEEEEEEGG-G-S-HHHHHHHHHCTTEEEEEEE--ST------TEEEEEEEE-S
T ss_pred             eeccCcEEEEEEecc-cCcCHHHHHHHHHHCCCeEEecccCCC------eEEEEEEEEcC
Confidence            99999999887 432 2223455555544  456666544331      44568888874

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.98  E-value=5.4e-09  Score=100.95  Aligned_cols=113  Identities=12%  Similarity=0.210  Sum_probs=79.0

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCceeec
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARLEK  181 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~  181 (518)
                      +..++||+|||.|+.+..|++.| .+|+++|.|+.              +......|..+..++ +.||+|+|..+ |++
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~G-~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v-~~f  106 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQG-FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVV-FMF  106 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESS-GGG
T ss_pred             CCCcEEEcCCCCcHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEE-ecc
Confidence            46799999999999999999999 58999999841              112346677777775 68999999876 888


Q ss_pred             cCCh--HHHHHHHHhcccCCcEEEEE-e-cCCCc---------cCchhHhhhccCccEEEEec
Q 010086          182 ASKP--LDFASEIVRTLKPEGFAVVH-V-RAKDE---------YSFNSFLDLFNSCKLVKSRD  231 (518)
Q Consensus       182 ~~dp--~~~l~Ei~RVLKPGG~lvi~-~-~~~~~---------~s~~~~~~lf~~~~~v~~~~  231 (518)
                      +..+  .+.++.|...+||||+.++. . ...+.         +....+...|.++++++-.+
T Consensus       107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~dW~il~y~E  169 (192)
T PF03848_consen  107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYADWEILKYNE  169 (192)
T ss_dssp             S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTTTSEEEEEEE
T ss_pred             CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhCCCeEEEEEc
Confidence            7644  35789999999999997764 2 22221         22244667788888888655

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.98  E-value=1.1e-09  Score=106.15  Aligned_cols=91  Identities=15%  Similarity=0.178  Sum_probs=70.4

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccC-CCCC--CCCCceeEEEEcC
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEG-HRIP--FDGNTFDFVFVGG  176 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da-~~LP--f~D~SFD~V~s~~  176 (518)
                      ++.+|||+|||+|..+..+++. +..+++|+|+++.               ...++++|+ +.++  +++++||.|++..
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            5789999999999999888764 3368999999851               123567888 7887  8899999999865


Q ss_pred             ceeeccC--------ChHHHHHHHHhcccCCcEEEEEec
Q 010086          177 ARLEKAS--------KPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       177 ~~l~~~~--------dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      . ..+..        ....+++++.|+|||||++++.+.
T Consensus       120 ~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~  157 (202)
T PRK00121        120 P-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD  157 (202)
T ss_pred             C-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence            3 32211        135789999999999999999764

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.97  E-value=5e-09  Score=101.85  Aligned_cols=90  Identities=21%  Similarity=0.196  Sum_probs=73.7

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCC-CCceeEEEEcCcee
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFD-GNTFDFVFVGGARL  179 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~-D~SFD~V~s~~~~l  179 (518)
                      .+.+|||+|||+|..+..+.+.+ .+++|+|+++.               ...+..++..+++.+ +++||+|++... +
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~-l  122 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV-L  122 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH-H
Confidence            47899999999999988887766 57999998741               122345677777665 489999999987 9


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +|+.++..+++++.++|+|||.+++...
T Consensus       123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       123 EHVPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             HhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            9999999999999999999999888654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.95  E-value=5.6e-09  Score=101.44  Aligned_cols=88  Identities=25%  Similarity=0.184  Sum_probs=68.5

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC--------------C--CcEEeccCCCCCCCCCceeEEEE
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS--------------K--PLVISGEGHRIPFDGNTFDFVFV  174 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~--------------~--~l~~~~da~~LPf~D~SFD~V~s  174 (518)
                      -++++.+|||||||+|..+..+++. + ..+|+|+|+++.              .  ..++.+|+.+.+.++++||.|++
T Consensus        69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~  148 (205)
T PRK13944         69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIV  148 (205)
T ss_pred             CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEE
Confidence            3578899999999999998777763 2 358999999841              1  12457888776556789999999


Q ss_pred             cCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          175 GGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ..+ ++|++      .|+.|+|||||++++.+.
T Consensus       149 ~~~-~~~~~------~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        149 TAA-ASTIP------SALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             ccC-cchhh------HHHHHhcCcCcEEEEEEc
Confidence            886 77653      588999999999988764

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.93  E-value=2.6e-08  Score=95.16  Aligned_cols=98  Identities=18%  Similarity=0.084  Sum_probs=70.2

Q ss_pred             cCCCCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCCC----CcEEeccCCCCC--------CCCCceeEEEEcC
Q 010086          111 EGYLSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSSK----PLVISGEGHRIP--------FDGNTFDFVFVGG  176 (518)
Q Consensus       111 ~gll~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~~----~l~~~~da~~LP--------f~D~SFD~V~s~~  176 (518)
                      ...++++.+|||+|||+|..+..+.+.  +..+++|+|+++..    ..++++|..+.+        +++++||+|++..
T Consensus        27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~  106 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDA  106 (188)
T ss_pred             hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCC
Confidence            345788999999999999998777653  23579999998731    124566766543        6788999999854


Q ss_pred             c-e------eecc---CChHHHHHHHHhcccCCcEEEEEecC
Q 010086          177 A-R------LEKA---SKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       177 ~-~------l~~~---~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      . .      ++|.   .+...+++++.|+|||||++++....
T Consensus       107 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~  148 (188)
T TIGR00438       107 APNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ  148 (188)
T ss_pred             CCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence            2 0      1111   11257899999999999999986543

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.92  E-value=3e-09  Score=104.37  Aligned_cols=92  Identities=20%  Similarity=0.185  Sum_probs=74.6

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCC-CCCCceeEEEEcCce
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIP-FDGNTFDFVFVGGAR  178 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LP-f~D~SFD~V~s~~~~  178 (518)
                      ..++.+|||||||+|..+..+.+.+ .+++++|+++.              ...+..++...++ ..++.||+|++... 
T Consensus        46 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~-  123 (233)
T PRK05134         46 GLFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM-  123 (233)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH-
Confidence            4568899999999999988887776 68999998742              1123455666554 45689999999987 


Q ss_pred             eeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          179 LEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++|..++..+++++.++|+|||.+++...
T Consensus       124 l~~~~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        124 LEHVPDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             hhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence            99999999999999999999999988754

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.92  E-value=7.8e-09  Score=101.08  Aligned_cols=98  Identities=21%  Similarity=0.235  Sum_probs=73.8

Q ss_pred             HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC---------------CCcEEeccCCCCCCC
Q 010086          103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS---------------KPLVISGEGHRIPFD  165 (518)
Q Consensus       103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~  165 (518)
                      .+...+++..-++++.+|||||||+|..+..+++. + ..+|+++|+++.               ...++.+|+...+.+
T Consensus        63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~  142 (212)
T PRK13942         63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE  142 (212)
T ss_pred             HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence            33334444445788999999999999999877764 3 258999999741               133568898877778


Q ss_pred             CCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          166 GNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       166 D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++.||.|++..+ ++++      ..++.+.|||||++++..+
T Consensus       143 ~~~fD~I~~~~~-~~~~------~~~l~~~LkpgG~lvi~~~  177 (212)
T PRK13942        143 NAPYDRIYVTAA-GPDI------PKPLIEQLKDGGIMVIPVG  177 (212)
T ss_pred             CCCcCEEEECCC-cccc------hHHHHHhhCCCcEEEEEEc
Confidence            899999999876 6554      2467889999999998764

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.91  E-value=5e-09  Score=104.08  Aligned_cols=125  Identities=14%  Similarity=0.125  Sum_probs=90.2

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCCCcEEeccCCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHh
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVR  194 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~R  194 (518)
                      +...-|-|+|||.+.++.  .+  ...|...|+..-...++.+|..++|.+|+|.|++++..+ |.- .|...++.|+.|
T Consensus       179 ~~~~vIaD~GCGEakiA~--~~--~~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLS-LMg-tn~~df~kEa~R  252 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS--SE--RHKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLS-LMG-TNLADFIKEANR  252 (325)
T ss_pred             cCceEEEecccchhhhhh--cc--ccceeeeeeecCCCceeeccccCCcCccCcccEEEeeHh-hhc-ccHHHHHHHHHH
Confidence            345678899999988764  11  358999999776667888999999999999999998775 433 577889999999


Q ss_pred             cccCCcEEEEEecCCCccCchhHhhhc--cCccEEEEeccCCCCCCccceeEEEEeecc
Q 010086          195 TLKPEGFAVVHVRAKDEYSFNSFLDLF--NSCKLVKSRDIDGIDSSLPYIREIVLKKES  251 (518)
Q Consensus       195 VLKPGG~lvi~~~~~~~~s~~~~~~lf--~~~~~v~~~~v~~~~~~~p~~~~vv~kK~~  251 (518)
                      ||||||.+.|+--....-|...|.+-+  -.|++.+....+.      ++...+|+|..
T Consensus       253 iLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~n~------~F~lfefkK~~  305 (325)
T KOG3045|consen  253 ILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVSNK------YFTLFEFKKTP  305 (325)
T ss_pred             HhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhhcc------eEEEEEEecCC
Confidence            999999999973332333334443332  2456666544332      55678899974

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.90  E-value=3.6e-09  Score=101.89  Aligned_cols=92  Identities=16%  Similarity=0.204  Sum_probs=68.6

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCCC---CCCCceeEEEEcC
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRIP---FDGNTFDFVFVGG  176 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~LP---f~D~SFD~V~s~~  176 (518)
                      ...++||||||+|..+..+++. +..+++|+|++..               ...++++|+.+++   +++++||.|++..
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            4569999999999999877764 3468999999741               1224678887664   6788999999865


Q ss_pred             ceeeccCCh--------HHHHHHHHhcccCCcEEEEEecC
Q 010086          177 ARLEKASKP--------LDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       177 ~~l~~~~dp--------~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      . ..|....        ..++++++|+|||||.+++.+..
T Consensus        96 p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~  134 (194)
T TIGR00091        96 P-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN  134 (194)
T ss_pred             C-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence            3 2222111        46899999999999999987743

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PTZ00146 fibrillarin; Provisional

Probab=98.88  E-value=2.2e-08  Score=102.39  Aligned_cols=123  Identities=13%  Similarity=0.107  Sum_probs=80.0

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC-------------CCcEEeccCCC---CCCCCCceeEEEE
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS-------------KPLVISGEGHR---IPFDGNTFDFVFV  174 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~-------------~~l~~~~da~~---LPf~D~SFD~V~s  174 (518)
                      .++++.+|||+|||+|..+..+++. | ...|+++|+++.             ....+.+|+..   ++++.++||+|++
T Consensus       129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~  208 (293)
T PTZ00146        129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFA  208 (293)
T ss_pred             ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence            3689999999999999999888874 3 358999998741             11234567643   2334568999999


Q ss_pred             cCceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccC---chhH----hhhcc--CccEEEEeccCCCCCC
Q 010086          175 GGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYS---FNSF----LDLFN--SCKLVKSRDIDGIDSS  238 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s---~~~~----~~lf~--~~~~v~~~~v~~~~~~  238 (518)
                      ..+   ...++..++.|+.|+|||||.+++.+.+....+   ....    .+.++  .|+.+....+..|+-.
T Consensus       209 Dva---~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~  278 (293)
T PTZ00146        209 DVA---QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERD  278 (293)
T ss_pred             eCC---CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCC
Confidence            763   222334566799999999999999653332211   1111    12223  4676666666666643

>PRK14967 putative methyltransferase; Provisional

Probab=98.87  E-value=1.6e-08  Score=99.25  Aligned_cols=94  Identities=16%  Similarity=0.088  Sum_probs=68.1

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      .++++.+|||+|||+|..+..+++.+..+++|+|+++.              ...++.+|... ++++++||+|++..-+
T Consensus        33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy  111 (223)
T PRK14967         33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPY  111 (223)
T ss_pred             ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCC
Confidence            35778999999999999988888777569999999841              11234566654 4678899999997421


Q ss_pred             eeccC--------------------ChHHHHHHHHhcccCCcEEEEEec
Q 010086          179 LEKAS--------------------KPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       179 l~~~~--------------------dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ..+..                    ....+++++.|+|||||++++...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~  160 (223)
T PRK14967        112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS  160 (223)
T ss_pred             CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            21111                    024578899999999999887643

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.86  E-value=4.6e-09  Score=102.08  Aligned_cols=118  Identities=13%  Similarity=0.137  Sum_probs=94.4

Q ss_pred             ccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC--------C--CcEEe
Q 010086           88 MYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS--------K--PLVIS  156 (518)
Q Consensus        88 ~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~--------~--~l~~~  156 (518)
                      .|+...+.+....-+.-..+|.+.--+.+-.+|.|+|||+|+.++.|.+ .+...++|||-|+.        .  ..+.+
T Consensus         2 ~W~p~~Yl~F~~eRtRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~   81 (257)
T COG4106           2 DWNPDQYLQFEDERTRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEE   81 (257)
T ss_pred             CCCHHHHHHHHHhccCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceec
Confidence            3777777776555566677788777777889999999999999988876 45689999998741        1  12456


Q ss_pred             ccCCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          157 GEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       157 ~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +|..+. -|+..+|++|++.+ |+|++|-.+.+.-..--|.|||+++++..
T Consensus        82 aDl~~w-~p~~~~dllfaNAv-lqWlpdH~~ll~rL~~~L~Pgg~LAVQmP  130 (257)
T COG4106          82 ADLRTW-KPEQPTDLLFANAV-LQWLPDHPELLPRLVSQLAPGGVLAVQMP  130 (257)
T ss_pred             ccHhhc-CCCCccchhhhhhh-hhhccccHHHHHHHHHhhCCCceEEEECC
Confidence            777664 25788999999987 99999988999999999999999999974

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.85  E-value=2.9e-08  Score=93.92  Aligned_cols=89  Identities=15%  Similarity=0.048  Sum_probs=66.6

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARLE  180 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~  180 (518)
                      .++.+|||+|||+|..+..+.+.+. +++|+|+++.              ...++.+|..+.+  +++||+|+++.. ++
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p-~~   93 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPP-YL   93 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCC-CC
Confidence            3567899999999999988888774 8999999842              1123456765543  469999999875 55


Q ss_pred             ccCC---------------------hHHHHHHHHhcccCCcEEEEEec
Q 010086          181 KASK---------------------PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       181 ~~~d---------------------p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +..+                     ..++++++.|+|||||.+++...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~  141 (179)
T TIGR00537        94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS  141 (179)
T ss_pred             CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence            4432                     23579999999999999888653

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PLN03075 nicotianamine synthase; Provisional

Probab=98.84  E-value=9.4e-08  Score=98.01  Aligned_cols=129  Identities=10%  Similarity=0.058  Sum_probs=85.4

Q ss_pred             CCCeEEEEcCCCCHhH-HH-HHhc-CCCcEEEEecCCC-----------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086          116 QSAKSLCVETQYGQDV-FA-LKEI-GVEDSIGIFKKSS-----------------KPLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~-~~-L~~~-g~~~v~gID~s~~-----------------~~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      +..+|+|||||.|..+ .. ++.. ....++|+|+++.                 ...+..+|+.+++-..+.||+||+.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~  202 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA  202 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence            6789999999988544 22 3232 2357999999741                 1235678887764345789999998


Q ss_pred             Cceeecc--CChHHHHHHHHhcccCCcEEEEEecCCC---ccCchhHhhhccCccEEEEeccCCCCCCccceeEEEEeec
Q 010086          176 GARLEKA--SKPLDFASEIVRTLKPEGFAVVHVRAKD---EYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKE  250 (518)
Q Consensus       176 ~~~l~~~--~dp~~~l~Ei~RVLKPGG~lvi~~~~~~---~~s~~~~~~lf~~~~~v~~~~v~~~~~~~p~~~~vv~kK~  250 (518)
                       + ++++  .++.++++.+.|.|||||++++...++-   .|..-... ..+.|++..+..+++  .-  .=+.|++||.
T Consensus       203 -A-Li~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~-~~~gf~~~~~~~P~~--~v--~Nsvi~~r~~  275 (296)
T PLN03075        203 -A-LVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPC-DLRGFEVLSVFHPTD--EV--INSVIIARKP  275 (296)
T ss_pred             -c-ccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChh-hCCCeEEEEEECCCC--Cc--eeeEEEEEee
Confidence             6 8887  5889999999999999999999874332   12211111 235666666655543  11  1235777776


Q ss_pred             c
Q 010086          251 S  251 (518)
Q Consensus       251 ~  251 (518)
                      .
T Consensus       276 ~  276 (296)
T PLN03075        276 G  276 (296)
T ss_pred             c
Confidence            4

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.84  E-value=9.1e-09  Score=101.49  Aligned_cols=92  Identities=17%  Similarity=0.187  Sum_probs=67.9

Q ss_pred             CCC-eEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------CCcE------EeccCCCCCCC--CCceeEEEEcCce
Q 010086          116 QSA-KSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------KPLV------ISGEGHRIPFD--GNTFDFVFVGGAR  178 (518)
Q Consensus       116 ~~~-rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------~~l~------~~~da~~LPf~--D~SFD~V~s~~~~  178 (518)
                      ++. .++|||||+|+.+..+++. +.+|+|+|+|+.        ++..      ...+.+-.++-  ++|+|+|++..+ 
T Consensus        32 ~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa-  109 (261)
T KOG3010|consen   32 EGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA-  109 (261)
T ss_pred             CCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh-
Confidence            444 7899999999888888776 589999999841        1111      12333444554  999999999997 


Q ss_pred             eeccCChHHHHHHHHhcccCCc-EEEEEecCCC
Q 010086          179 LEKASKPLDFASEIVRTLKPEG-FAVVHVRAKD  210 (518)
Q Consensus       179 l~~~~dp~~~l~Ei~RVLKPGG-~lvi~~~~~~  210 (518)
                      +||+ |.+++++++.|||||.| ++++-....+
T Consensus       110 ~HWF-dle~fy~~~~rvLRk~Gg~iavW~Y~dd  141 (261)
T KOG3010|consen  110 VHWF-DLERFYKEAYRVLRKDGGLIAVWNYNDD  141 (261)
T ss_pred             HHhh-chHHHHHHHHHHcCCCCCEEEEEEccCC
Confidence            8886 56799999999999977 6666554434

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.81  E-value=2e-08  Score=102.07  Aligned_cols=99  Identities=20%  Similarity=0.211  Sum_probs=73.6

Q ss_pred             HcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCCC-----------CcE--EeccCCCCCCCCCceeEEEEc
Q 010086          110 SEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSSK-----------PLV--ISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       110 ~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~~-----------~l~--~~~da~~LPf~D~SFD~V~s~  175 (518)
                      +.-.|++|.++||||||-|.++..+++. | .+|+|+++|++.           .+-  +.......+..++.||-|+|.
T Consensus        66 ~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~-v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSv  144 (283)
T COG2230          66 EKLGLKPGMTLLDIGCGWGGLAIYAAEEYG-VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSV  144 (283)
T ss_pred             HhcCCCCCCEEEEeCCChhHHHHHHHHHcC-CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeeh
Confidence            3345899999999999999999877765 5 799999999531           110  111122333445569999999


Q ss_pred             CceeeccCC--hHHHHHHHHhcccCCcEEEEE-ecCCC
Q 010086          176 GARLEKASK--PLDFASEIVRTLKPEGFAVVH-VRAKD  210 (518)
Q Consensus       176 ~~~l~~~~d--p~~~l~Ei~RVLKPGG~lvi~-~~~~~  210 (518)
                      .+ |+|+-.  -..+++-+.++|+|||.++++ +...+
T Consensus       145 gm-fEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~  181 (283)
T COG2230         145 GM-FEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD  181 (283)
T ss_pred             hh-HHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence            98 999975  678999999999999998886 44433

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.81  E-value=2.1e-08  Score=97.96  Aligned_cols=89  Identities=25%  Similarity=0.236  Sum_probs=67.7

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcC--CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIG--VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g--~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      -++++.+|||||||+|..+..|++..  ...|+++|+++.               ...++.+|+.+.+...+.||+|++.
T Consensus        74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~  153 (215)
T TIGR00080        74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT  153 (215)
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence            36789999999999999998887753  135999998741               1234678887765556799999987


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      .. ..++      ..++.+.|||||++++.+..
T Consensus       154 ~~-~~~~------~~~~~~~L~~gG~lv~~~~~  179 (215)
T TIGR00080       154 AA-GPKI------PEALIDQLKEGGILVMPVGE  179 (215)
T ss_pred             CC-cccc------cHHHHHhcCcCcEEEEEEcC
Confidence            75 5543      35688999999999987653

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.81  E-value=1.4e-08  Score=98.94  Aligned_cols=91  Identities=25%  Similarity=0.288  Sum_probs=73.3

Q ss_pred             CCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------C-CcEEeccCCCCCCCCCceeEEEEcCceeecc---
Q 010086          117 SAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------K-PLVISGEGHRIPFDGNTFDFVFVGGARLEKA---  182 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------~-~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~---  182 (518)
                      ..-|||||||+|.....|.+.| ...+|+|+|++          . .+..+.-.+-|||+.++||.|+|..+ ++|+   
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISA-vQWLcnA  128 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISA-VQWLCNA  128 (270)
T ss_pred             CcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeee-eeeeccc
Confidence            6789999999999999999888 78999999963          1 12233446889999999999999887 6665   


Q ss_pred             ----CChH----HHHHHHHhcccCCcEEEEEecCC
Q 010086          183 ----SKPL----DFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       183 ----~dp~----~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                          .+|.    .++.-++.+||+|+..++++...
T Consensus       129 ~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe  163 (270)
T KOG1541|consen  129 DKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE  163 (270)
T ss_pred             CccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence                2454    36788999999999999998643

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.80  E-value=2.7e-08  Score=101.67  Aligned_cols=86  Identities=15%  Similarity=0.063  Sum_probs=65.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC--------------Cc--EEeccCCCCCCCCCceeEEEEcCc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK--------------PL--VISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~--------------~l--~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      ..++.+|||+|||+|..+..+++.|..+|+|+|+++..              ..  ...++  ..++.+++||+|+++..
T Consensus       157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~  234 (288)
T TIGR00406       157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANIL  234 (288)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecC
Confidence            45789999999999999988888886799999998420              11  12222  34556789999999763


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                       .++   ...++.++.|+|||||.+++.
T Consensus       235 -~~~---l~~ll~~~~~~LkpgG~li~s  258 (288)
T TIGR00406       235 -AEV---IKELYPQFSRLVKPGGWLILS  258 (288)
T ss_pred             -HHH---HHHHHHHHHHHcCCCcEEEEE
Confidence             332   346889999999999999886

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.80  E-value=5.1e-08  Score=91.96  Aligned_cols=111  Identities=17%  Similarity=0.261  Sum_probs=74.6

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCC-CcEEEEecCCC--------------C-CcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGV-EDSIGIFKKSS--------------K-PLVISGEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~-~~v~gID~s~~--------------~-~l~~~~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      ++.++||+|||+|..+..+++.+. .+|+++|+++.              . ..++.+|..+ +++++.||+|+|+-= +
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP-~  108 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPP-F  108 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE----S
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccc-h
Confidence            678999999999999988887653 36999999841              1 2234555533 455899999999753 4


Q ss_pred             eccCC-----hHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEE
Q 010086          180 EKASK-----PLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKS  229 (518)
Q Consensus       180 ~~~~d-----p~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~  229 (518)
                      +.-.+     ..+++++..+.|||||.+++.......+. ..+.++|.+.+++.-
T Consensus       109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~-~~l~~~f~~~~~~~~  162 (170)
T PF05175_consen  109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYE-RLLKELFGDVEVVAK  162 (170)
T ss_dssp             BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHH-HHHHHHHS--EEEEE
T ss_pred             hcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChH-HHHHHhcCCEEEEEE
Confidence            33322     35789999999999999987665443332 236667776655543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.79  E-value=1.7e-08  Score=100.89  Aligned_cols=114  Identities=15%  Similarity=0.175  Sum_probs=73.4

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCCCcE-----E-ec--cCCCCCCCCCceeEEEEcCceeeccCCh
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLV-----I-SG--EGHRIPFDGNTFDFVFVGGARLEKASKP  185 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~~l~-----~-~~--da~~LPf~D~SFD~V~s~~~~l~~~~dp  185 (518)
                      +.++.+|||+|||+|..+..+++.|...++|+|+++.....     . .+  +...++..+.+||+|+++.. .+.   .
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~-~~~---~  192 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANIL-ANP---L  192 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCc-HHH---H
Confidence            46789999999999999888888876679999998521100     0 00  11223334448999999753 221   3


Q ss_pred             HHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhcc--CccEEEEeccC
Q 010086          186 LDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFN--SCKLVKSRDID  233 (518)
Q Consensus       186 ~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~--~~~~v~~~~v~  233 (518)
                      ..++.++.|+|||||++++.-....  ....+...+.  .++++....-+
T Consensus       193 ~~l~~~~~~~LkpgG~lilsgi~~~--~~~~v~~~l~~~Gf~~~~~~~~~  240 (250)
T PRK00517        193 LELAPDLARLLKPGGRLILSGILEE--QADEVLEAYEEAGFTLDEVLERG  240 (250)
T ss_pred             HHHHHHHHHhcCCCcEEEEEECcHh--hHHHHHHHHHHCCCEEEEEEEeC
Confidence            4678999999999999998732111  1123333333  36666666543

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.79  E-value=3e-08  Score=96.78  Aligned_cols=86  Identities=10%  Similarity=-0.033  Sum_probs=67.7

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      +.++.++||+|||+|..+..+++.+ ..++|+|+++.                ...+..+|.++++   ++||+|++..+
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~  128 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV  128 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence            3568899999999999998888776 59999999841                1224567777766   89999999887


Q ss_pred             eeeccCC--hHHHHHHHHhcccCCcEEEE
Q 010086          178 RLEKASK--PLDFASEIVRTLKPEGFAVV  204 (518)
Q Consensus       178 ~l~~~~d--p~~~l~Ei~RVLKPGG~lvi  204 (518)
                       ++|++.  +..+++++.|++|+|+++.+
T Consensus       129 -l~~~~~~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021       129 -LIHYPASDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             -HHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence             888753  45789999999997766554

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.79  E-value=2.3e-08  Score=106.02  Aligned_cols=94  Identities=21%  Similarity=0.259  Sum_probs=70.9

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCC--CCCCCceeEEEEcC
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRI--PFDGNTFDFVFVGG  176 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~L--Pf~D~SFD~V~s~~  176 (518)
                      ..+..+||||||+|..+..+++. +...++|+|+++.               ...++++|+..+  +|++++||.|++..
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF  200 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF  200 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence            34568999999999999888764 3469999999731               122468888765  68999999999865


Q ss_pred             ceeeccCCh------HHHHHHHHhcccCCcEEEEEecCC
Q 010086          177 ARLEKASKP------LDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       177 ~~l~~~~dp------~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      . ..|...+      ..+++|+.|+|||||.+.+.+...
T Consensus       201 P-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~  238 (390)
T PRK14121        201 P-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE  238 (390)
T ss_pred             C-CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence            3 2222111      478999999999999999987543

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.78  E-value=9e-09  Score=89.71  Aligned_cols=91  Identities=20%  Similarity=0.268  Sum_probs=67.7

Q ss_pred             CCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCC--CCCCceeEEEEcCce
Q 010086          117 SAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIP--FDGNTFDFVFVGGAR  178 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LP--f~D~SFD~V~s~~~~  178 (518)
                      |.+|||+|||+|..+..+.+.+..+++|+|+++.                ...++.+|...++  +++++||+|+++--+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            5689999999999998877766679999999841                2245678887775  899999999997641


Q ss_pred             eeccCC-------hHHHHHHHHhcccCCcEEEEEec
Q 010086          179 LEKASK-------PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       179 l~~~~d-------p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ..+..+       -..+++++.|.|||||++++.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            222111       13679999999999999988764

...

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.78  E-value=3.4e-08  Score=102.75  Aligned_cols=104  Identities=16%  Similarity=0.177  Sum_probs=77.0

Q ss_pred             HHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C-CcEEeccCCCCCCCCCc
Q 010086          104 VFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K-PLVISGEGHRIPFDGNT  168 (518)
Q Consensus       104 l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~-~l~~~~da~~LPf~D~S  168 (518)
                      +.+.++....++++.++||.|||||..+..++..| ..++|+|+++.              . ..+..+|+.++|+++++
T Consensus       170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~  248 (329)
T TIGR01177       170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSES  248 (329)
T ss_pred             HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCC
Confidence            33344444456889999999999999887666666 68999999741              1 23568999999999999


Q ss_pred             eeEEEEcCc-----eeec--c-CChHHHHHHHHhcccCCcEEEEEecC
Q 010086          169 FDFVFVGGA-----RLEK--A-SKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       169 FD~V~s~~~-----~l~~--~-~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      ||+|++.--     ....  . ....++++++.|+|||||++++.+..
T Consensus       249 ~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~  296 (329)
T TIGR01177       249 VDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT  296 (329)
T ss_pred             CCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence            999999521     0111  1 11357899999999999999887654

This family is found exclusively in the Archaea.

>PRK14968 putative methyltransferase; Provisional

Probab=98.75  E-value=9.3e-08  Score=89.94  Aligned_cols=90  Identities=22%  Similarity=0.296  Sum_probs=66.2

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C---CcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K---PLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~---~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      .++.++||+|||+|..+..+.+.+ .+++|+|+++.              .   ..++.+|..+ ++++++||+|++...
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p   99 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP   99 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence            577899999999999998887775 79999999741              1   2234555544 566779999998653


Q ss_pred             eeec---------------------cCChHHHHHHHHhcccCCcEEEEEec
Q 010086          178 RLEK---------------------ASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       178 ~l~~---------------------~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                       +.+                     ......+++++.|+|||||.+++...
T Consensus       100 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~  149 (188)
T PRK14968        100 -YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS  149 (188)
T ss_pred             -cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence             211                     01134578999999999999887754

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.73  E-value=8.2e-08  Score=100.67  Aligned_cols=109  Identities=15%  Similarity=0.060  Sum_probs=76.5

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086          116 QSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARLE  180 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~  180 (518)
                      ..++|||+|||+|..+..+.+.+ ..+++++|+++.              ...++.+|..+  ..++.||+|+|+.- ||
T Consensus       196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPP-FH  272 (342)
T PRK09489        196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPP-FH  272 (342)
T ss_pred             CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCC-cc
Confidence            35689999999999998887653 358999999741              11234455433  34689999999876 77


Q ss_pred             ccC-----ChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEE
Q 010086          181 KAS-----KPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVK  228 (518)
Q Consensus       181 ~~~-----dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~  228 (518)
                      +..     ...++++++.|.|||||.+++.....-.|. .-+.+.|.+++++.
T Consensus       273 ~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~-~~l~~~Fg~~~~la  324 (342)
T PRK09489        273 DGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP-DLLDETFGSHEVLA  324 (342)
T ss_pred             CCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChH-HHHHHHcCCeEEEE
Confidence            532     346889999999999999988765443342 23344577766554

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.70  E-value=2e-08  Score=93.93  Aligned_cols=53  Identities=30%  Similarity=0.408  Sum_probs=49.4

Q ss_pred             cEEeccCCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          153 LVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       153 l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .++++|++++||++++||+|++..+ ++|++|+.++++|++|+|||||.+++..
T Consensus        29 ~~~~~d~~~lp~~~~~fD~v~~~~~-l~~~~d~~~~l~ei~rvLkpGG~l~i~d   81 (160)
T PLN02232         29 EWIEGDAIDLPFDDCEFDAVTMGYG-LRNVVDRLRAMKEMYRVLKPGSRVSILD   81 (160)
T ss_pred             EEEEechhhCCCCCCCeeEEEecch-hhcCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence            4678999999999999999999987 9999999999999999999999998874

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.69  E-value=1.2e-07  Score=92.23  Aligned_cols=91  Identities=19%  Similarity=0.166  Sum_probs=67.1

Q ss_pred             HHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEE
Q 010086          109 ISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVF  173 (518)
Q Consensus       109 ~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~  173 (518)
                      .+..-++++.+|||||||+|..+..+++.+ .+++++|+++.               ...++.+|..+...++++||+|+
T Consensus        71 ~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  149 (212)
T PRK00312         71 TELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRIL  149 (212)
T ss_pred             HHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEE
Confidence            333346788999999999999988777764 58999998731               12245666644322458999999


Q ss_pred             EcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +..+ ++++      .+++.+.|||||++++.+.
T Consensus       150 ~~~~-~~~~------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        150 VTAA-APEI------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             EccC-chhh------hHHHHHhcCCCcEEEEEEc
Confidence            9875 6654      3567899999999999876

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.67  E-value=1.7e-07  Score=89.32  Aligned_cols=87  Identities=18%  Similarity=0.180  Sum_probs=64.5

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      +.++.+|||||||+|..+..+.+.+ ..+++++|+++.               ...++.+++. .++ +++||+|++...
T Consensus        29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~  106 (187)
T PRK08287         29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGS  106 (187)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCC
Confidence            4578899999999999998777643 358999999742               1123455553 344 358999999764


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                       .++   ....++++.|+|||||++++..
T Consensus       107 -~~~---~~~~l~~~~~~Lk~gG~lv~~~  131 (187)
T PRK08287        107 -GGN---LTAIIDWSLAHLHPGGRLVLTF  131 (187)
T ss_pred             -ccC---HHHHHHHHHHhcCCCeEEEEEE
Confidence             433   4568899999999999998864

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.67  E-value=1.2e-07  Score=97.41  Aligned_cols=95  Identities=16%  Similarity=0.076  Sum_probs=71.1

Q ss_pred             HHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeE
Q 010086          108 LISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDF  171 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~  171 (518)
                      +.+..-++++.++||||||+|..+..+.+. +..+++++|....               ...++.+|..+.++++  +|+
T Consensus       141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~  218 (306)
T TIGR02716       141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADA  218 (306)
T ss_pred             HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCE
Confidence            344444677889999999999999877664 3358999996310               1124578887777765  599


Q ss_pred             EEEcCceeeccCCh--HHHHHHHHhcccCCcEEEEE
Q 010086          172 VFVGGARLEKASKP--LDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       172 V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |++... +|++.+.  .+.+++++|+|||||++++.
T Consensus       219 v~~~~~-lh~~~~~~~~~il~~~~~~L~pgG~l~i~  253 (306)
T TIGR02716       219 VLFCRI-LYSANEQLSTIMCKKAFDAMRSGGRLLIL  253 (306)
T ss_pred             EEeEhh-hhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence            998886 8877654  36899999999999999886

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.67  E-value=1.1e-07  Score=100.80  Aligned_cols=109  Identities=10%  Similarity=0.140  Sum_probs=75.1

Q ss_pred             CCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC-------------CC-----cEEeccCCCCCCCCCceeEEEEcCc
Q 010086          117 SAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS-------------KP-----LVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~-------------~~-----l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      +.+|||+|||+|..+..+.+.+ ..+|+++|+|+.             ..     .+..+|... .+++++||+|+|+--
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP  307 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP  307 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence            4699999999999998887653 469999999831             11     123444432 245679999999764


Q ss_pred             eeecc---CC--hHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEE
Q 010086          178 RLEKA---SK--PLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVK  228 (518)
Q Consensus       178 ~l~~~---~d--p~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~  228 (518)
                       ||..   .+  ..++++++.|+|||||.+++.....-.|. ..+.++|.+++++.
T Consensus       308 -fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~-~~L~~~fg~~~~va  361 (378)
T PRK15001        308 -FHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYF-HKLKKIFGNCTTIA  361 (378)
T ss_pred             -cccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHH-HHHHHHcCCceEEc
Confidence             5432   11  24788999999999999988865443332 34555677776653

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.67  E-value=5.6e-08  Score=96.28  Aligned_cols=118  Identities=14%  Similarity=0.142  Sum_probs=83.5

Q ss_pred             cCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------------------CCcEEeccCCCCC
Q 010086          111 EGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------------------KPLVISGEGHRIP  163 (518)
Q Consensus       111 ~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------------------~~l~~~~da~~LP  163 (518)
                      ...+.++.+||+.|||.|..+..|++.| .+|+|+|+|+.                           ...+.++|.-+++
T Consensus        38 ~l~~~~~~rvLvPgCGkg~D~~~LA~~G-~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~  116 (226)
T PRK13256         38 KLNINDSSVCLIPMCGCSIDMLFFLSKG-VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP  116 (226)
T ss_pred             hcCCCCCCeEEEeCCCChHHHHHHHhCC-CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence            3344567899999999999999999999 47999999841                           1123578888886


Q ss_pred             CC---CCceeEEEEcCceeeccCCh--HHHHHHHHhcccCCcEEEEEe-cCC-----Ccc--CchhHhhhccC-ccEEEE
Q 010086          164 FD---GNTFDFVFVGGARLEKASKP--LDFASEIVRTLKPEGFAVVHV-RAK-----DEY--SFNSFLDLFNS-CKLVKS  229 (518)
Q Consensus       164 f~---D~SFD~V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~~-~~~-----~~~--s~~~~~~lf~~-~~~v~~  229 (518)
                      ..   -+.||+|+-..+ |++++..  .+.++-+.+.|||||.+++.+ ...     +++  +...+.++|.. |++..+
T Consensus       117 ~~~~~~~~fD~VyDra~-~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~~l  195 (226)
T PRK13256        117 KIANNLPVFDIWYDRGA-YIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFELI  195 (226)
T ss_pred             ccccccCCcCeeeeehh-HhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEEEe
Confidence            42   268999999886 8888532  367899999999999876653 211     122  33456667743 444443


Q ss_pred             e
Q 010086          230 R  230 (518)
Q Consensus       230 ~  230 (518)
                      .
T Consensus       196 ~  196 (226)
T PRK13256        196 D  196 (226)
T ss_pred             e
Confidence            3

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.67  E-value=1.8e-07  Score=96.08  Aligned_cols=121  Identities=20%  Similarity=0.324  Sum_probs=80.3

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      ..++.+|||||||||-++.+.+++|..+|+|+|+++.              ...+....  ......+.||+|+++-  +
T Consensus       159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI--~  234 (295)
T PF06325_consen  159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANI--L  234 (295)
T ss_dssp             SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES---
T ss_pred             ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECC--C
Confidence            5688999999999999998888899889999999752              11111111  2234569999999976  3


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEE-ecCCCccCchhHhhhcc-CccEEEEeccCCCCCCccceeEEEEeec
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVH-VRAKDEYSFNSFLDLFN-SCKLVKSRDIDGIDSSLPYIREIVLKKE  250 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~-~~~~~~~s~~~~~~lf~-~~~~v~~~~v~~~~~~~p~~~~vv~kK~  250 (518)
                      .++  ....+..+.+.|||||++++. +-....   ..+...|+ .++++....-+  +|.     .+++||+
T Consensus       235 ~~v--L~~l~~~~~~~l~~~G~lIlSGIl~~~~---~~v~~a~~~g~~~~~~~~~~--~W~-----~l~~~Kk  295 (295)
T PF06325_consen  235 ADV--LLELAPDIASLLKPGGYLILSGILEEQE---DEVIEAYKQGFELVEEREEG--EWV-----ALVFKKK  295 (295)
T ss_dssp             HHH--HHHHHHHCHHHEEEEEEEEEEEEEGGGH---HHHHHHHHTTEEEEEEEEET--TEE-----EEEEEE-
T ss_pred             HHH--HHHHHHHHHHhhCCCCEEEEccccHHHH---HHHHHHHHCCCEEEEEEEEC--CEE-----EEEEEeC
Confidence            332  245678899999999999996 322221   23444443 67777777654  443     4677774

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.66  E-value=1.7e-07  Score=91.36  Aligned_cols=83  Identities=11%  Similarity=0.004  Sum_probs=62.4

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      ..++.+|||||||+|..+..|.+.+ ..++|+|+++.                ...+..+|   ++..+++||+|++..+
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~  136 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDV  136 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcch
Confidence            3567899999999999998888877 57999999741                01223444   5667899999999987


Q ss_pred             eeeccCCh--HHHHHHHHhcccCCcE
Q 010086          178 RLEKASKP--LDFASEIVRTLKPEGF  201 (518)
Q Consensus       178 ~l~~~~dp--~~~l~Ei~RVLKPGG~  201 (518)
                       ++|++++  ...++++.+.+++|++
T Consensus       137 -l~~~~~~~~~~~l~~l~~~~~~~~~  161 (230)
T PRK07580        137 -LIHYPQEDAARMLAHLASLTRGSLI  161 (230)
T ss_pred             -hhcCCHHHHHHHHHHHHhhcCCeEE
Confidence             8887755  3678888887754444

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.65  E-value=1.2e-07  Score=77.56  Aligned_cols=86  Identities=22%  Similarity=0.290  Sum_probs=67.5

Q ss_pred             eEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCC-CCCceeEEEEcCceeec-
Q 010086          119 KSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPF-DGNTFDFVFVGGARLEK-  181 (518)
Q Consensus       119 rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf-~D~SFD~V~s~~~~l~~-  181 (518)
                      ++||+|||+|..+..+.+.+..+++++|+++.               ...+..+|..+.+. ..++||+|++... +++ 
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~-~~~~   79 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP-LHHL   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc-eeeh
Confidence            58999999999987777644579999998741               11234566666543 6788999999987 777 


Q ss_pred             cCChHHHHHHHHhcccCCcEEEEE
Q 010086          182 ASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       182 ~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ...+...++.+.+.|||||.+++.
T Consensus        80 ~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            667788999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR03438 probable methyltransferase

Probab=98.65  E-value=1.6e-07  Score=96.60  Aligned_cols=111  Identities=11%  Similarity=0.075  Sum_probs=76.6

Q ss_pred             HHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcC--CCcEEEEecCCC-------------CCc---EE
Q 010086           94 WIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIG--VEDSIGIFKKSS-------------KPL---VI  155 (518)
Q Consensus        94 wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g--~~~v~gID~s~~-------------~~l---~~  155 (518)
                      +|...+++....+++.+.  ++++.+|||+|||||..+..|.+..  ..+++|+|+|+.             +..   .+
T Consensus        43 tr~E~~il~~~~~~ia~~--~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i  120 (301)
T TIGR03438        43 TRTEAAILERHADEIAAA--TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGI  120 (301)
T ss_pred             HHHHHHHHHHHHHHHHHh--hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEE
Confidence            455556666666655542  4577899999999999988776642  368999999851             221   35


Q ss_pred             eccCCC-CCCCCCc----eeEEEEcCceeeccCC--hHHHHHHHHhcccCCcEEEEEec
Q 010086          156 SGEGHR-IPFDGNT----FDFVFVGGARLEKASK--PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       156 ~~da~~-LPf~D~S----FD~V~s~~~~l~~~~d--p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++|..+ ++++...    ..++++... ++|++.  ...++++++++|+|||.+++.+.
T Consensus       121 ~gD~~~~~~~~~~~~~~~~~~~~~gs~-~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d  178 (301)
T TIGR03438       121 CADFTQPLALPPEPAAGRRLGFFPGST-IGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD  178 (301)
T ss_pred             EEcccchhhhhcccccCCeEEEEeccc-ccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            778765 4554432    344444444 777753  34689999999999999998763

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.63  E-value=2.9e-08  Score=106.84  Aligned_cols=85  Identities=20%  Similarity=0.189  Sum_probs=62.0

Q ss_pred             eEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---CC--cE--------E--eccCCCCCCCCCceeEEEEcCceeeccC
Q 010086          119 KSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---KP--LV--------I--SGEGHRIPFDGNTFDFVFVGGARLEKAS  183 (518)
Q Consensus       119 rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---~~--l~--------~--~~da~~LPf~D~SFD~V~s~~~~l~~~~  183 (518)
                      .+||||||+|.++..|.+.+   |+.+-+.+.   +.  .+        +  ..-.+.||||+++||+|-|+.....+.+
T Consensus       120 ~~LDvGcG~aSF~a~l~~r~---V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~  196 (506)
T PF03141_consen  120 TALDVGCGVASFGAYLLERN---VTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHP  196 (506)
T ss_pred             EEEeccceeehhHHHHhhCC---ceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchh
Confidence            68999999999998888765   333333221   11  11        1  1235789999999999999886345555


Q ss_pred             ChHHHHHHHHhcccCCcEEEEEe
Q 010086          184 KPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       184 dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +-...+-|+.|||||||+++..-
T Consensus       197 ~~g~~l~evdRvLRpGGyfv~S~  219 (506)
T PF03141_consen  197 NDGFLLFEVDRVLRPGGYFVLSG  219 (506)
T ss_pred             cccceeehhhhhhccCceEEecC
Confidence            55678899999999999998863

; GO: 0008168 methyltransferase activity

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.62  E-value=2.3e-07  Score=89.46  Aligned_cols=90  Identities=20%  Similarity=0.259  Sum_probs=67.2

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHh-cC-CCcEEEEecCCC------------C----CcEEeccCCC-CCCCCCceeEEE
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKE-IG-VEDSIGIFKKSS------------K----PLVISGEGHR-IPFDGNTFDFVF  173 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~-~g-~~~v~gID~s~~------------~----~l~~~~da~~-LPf~D~SFD~V~  173 (518)
                      -+.++.++||+|||+|..+..+++ .+ ..+++++|+++.            .    ..++.+|+.+ ++..++.||.|+
T Consensus        37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~  116 (198)
T PRK00377         37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF  116 (198)
T ss_pred             CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence            467889999999999998876654 33 358999999741            1    1234677765 344457899999


Q ss_pred             EcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +...    ..++..+++++.|+|||||++++.+
T Consensus       117 ~~~~----~~~~~~~l~~~~~~LkpgG~lv~~~  145 (198)
T PRK00377        117 IGGG----SEKLKEIISASWEIIKKGGRIVIDA  145 (198)
T ss_pred             ECCC----cccHHHHHHHHHHHcCCCcEEEEEe
Confidence            9542    2357789999999999999998754

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.62  E-value=1.4e-06  Score=95.86  Aligned_cols=289  Identities=18%  Similarity=0.218  Sum_probs=156.8

Q ss_pred             CCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          116 QSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      ++.+|||+|||+|..+..++. .+..+++|+|+|+.                ...++++|..+ ++++++||+|+|+--+
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY  216 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY  216 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence            346899999999999877764 34468999999841                01234566432 3456789999995311


Q ss_pred             ee-------------cc--------CC----hHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhcc--CccEEEEe-
Q 010086          179 LE-------------KA--------SK----PLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFN--SCKLVKSR-  230 (518)
Q Consensus       179 l~-------------~~--------~d----p~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~--~~~~v~~~-  230 (518)
                      +.             |-        .+    ..+.++++.++|||||.+++.++....   ..+..++.  .|+.+.+. 
T Consensus       217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~---~~v~~~~~~~g~~~~~~~~  293 (506)
T PRK01544        217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQE---EAVTQIFLDHGYNIESVYK  293 (506)
T ss_pred             CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchH---HHHHHHHHhcCCCceEEEe
Confidence            11             10        01    123567889999999999998765433   33444433  23333322 


Q ss_pred             ccCCCCCCccceeEEEEeeccccccccccCCCCCccccCC-CCchhhHHHHHhcCcccccCCCChhhhhhhhhcccccCC
Q 010086          231 DIDGIDSSLPYIREIVLKKESDLILGHRENLPDGNVANKC-SVPGYKQAFVRKAEPLIMEEPLKPWITMKRNIKNIKYLP  309 (518)
Q Consensus       231 ~v~~~~~~~p~~~~vv~kK~~~~~~~~~~~~~~~~~~~~C-~~~~~k~~~l~~~Epli~E~~~~~~~~~~~~~~~~~ylp  309 (518)
                      ...|.+      | ++.--....      ..  +-.+.+- .+...-+.+++..-|.+.-...+                
T Consensus       294 D~~g~~------R-~v~~~~~~~------~r--s~~rr~g~~~~~~q~~~~e~~~p~~~i~~ek----------------  342 (506)
T PRK01544        294 DLQGHS------R-VILISPINL------NR--SYARRIGKSLSGVQQNLLDNELPKYLFSKEK----------------  342 (506)
T ss_pred             cCCCCc------e-EEEeccccC------Cc--ceeccCCCCCCHHHHHHHHhhhhhhCCCHHH----------------
Confidence            222111      1 111110000      00  0001111 23333445555555544432111                


Q ss_pred             cccccccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh------hccCCceEEEeecee-----
Q 010086          310 SMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE------YKVKKKVKLLPYAAW-----  378 (518)
Q Consensus       310 ~~~d~s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~------~~~~~~V~~~~~Av~-----  378 (518)
                       +.   -+.+++++|+|.+ .|..+ -...+.+|..    .+.++|.......+      -.+..|+.++...+.     
T Consensus       343 -lf---~~~~p~~lEIG~G-~G~~~-~~~A~~~p~~----~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~  412 (506)
T PRK01544        343 -LV---NEKRKVFLEIGFG-MGEHF-INQAKMNPDA----LFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILND  412 (506)
T ss_pred             -hC---CCCCceEEEECCC-chHHH-HHHHHhCCCC----CEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHh
Confidence             11   2468999999999 48755 5666778843    88999998763221      124578887765321     


Q ss_pred             ecCCceE-EEecC-CCCcchhhcccCCccccccccCCCCCCCCCcceeecccHHHHHhhcCCCCCeEEEEeeccchhhhh
Q 010086          379 VRNETLS-FQINH-DPDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDL  456 (518)
Q Consensus       379 ~~~~tl~-f~~~~-~~~~~~~~~~~g~~~i~p~~~~~~~~~~g~~~~v~~vd~s~wl~~~v~~~D~VVlKMDIEGaE~~v  456 (518)
                      ..++++. ++++= ||..                  +.  ..-+ ..+-.-+|.+.+...+++.-.+-+|=|.+.-=...
T Consensus       413 ~~~~sv~~i~i~FPDPWp------------------Kk--rh~k-rRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~  471 (506)
T PRK01544        413 LPNNSLDGIYILFPDPWI------------------KN--KQKK-KRIFNKERLKILQDKLKDNGNLVFASDIENYFYEA  471 (506)
T ss_pred             cCcccccEEEEECCCCCC------------------CC--CCcc-ccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence            1122221 11111 1211                  10  0111 22334467777777788888889999999744445


Q ss_pred             HHHHHhcCCccccc
Q 010086          457 IPRLFETGAICLID  470 (518)
Q Consensus       457 L~~l~~~g~i~~ID  470 (518)
                      ++.+.+.+.+..+.
T Consensus       472 ~~~~~~~~~f~~~~  485 (506)
T PRK01544        472 IELIQQNGNFEIIN  485 (506)
T ss_pred             HHHHHhCCCeEecc
Confidence            66666666665543

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=1.3e-07  Score=96.82  Aligned_cols=113  Identities=18%  Similarity=0.280  Sum_probs=78.0

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC-------------CcEEec-cCCCCCCCC-CceeEEEEcCc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK-------------PLVISG-EGHRIPFDG-NTFDFVFVGGA  177 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~-------------~l~~~~-da~~LPf~D-~SFD~V~s~~~  177 (518)
                      +++++.+|||+|||+|-++.+.+++|...|+|+|+.+-.             ....+. -...+..+. +.||+|+++- 
T Consensus       159 ~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-  237 (300)
T COG2264         159 LLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-  237 (300)
T ss_pred             hhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-
Confidence            345899999999999999999999998899999997521             001111 112233444 5999999975 


Q ss_pred             eeeccCCh-HHHHHHHHhcccCCcEEEEE-ecCCCccCchhHhhhc--cCccEEEEeccC
Q 010086          178 RLEKASKP-LDFASEIVRTLKPEGFAVVH-VRAKDEYSFNSFLDLF--NSCKLVKSRDID  233 (518)
Q Consensus       178 ~l~~~~dp-~~~l~Ei~RVLKPGG~lvi~-~~~~~~~s~~~~~~lf--~~~~~v~~~~v~  233 (518)
                       |-   +| .+++.++.|.|||||++++. +-...   ...+.+-+  ..++++.....+
T Consensus       238 -LA---~vl~~La~~~~~~lkpgg~lIlSGIl~~q---~~~V~~a~~~~gf~v~~~~~~~  290 (300)
T COG2264         238 -LA---EVLVELAPDIKRLLKPGGRLILSGILEDQ---AESVAEAYEQAGFEVVEVLERE  290 (300)
T ss_pred             -hH---HHHHHHHHHHHHHcCCCceEEEEeehHhH---HHHHHHHHHhCCCeEeEEEecC
Confidence             33   34 36789999999999999986 32111   13444444  467788777654

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.52  E-value=6.8e-07  Score=88.15  Aligned_cols=92  Identities=15%  Similarity=0.212  Sum_probs=65.6

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCce-
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGAR-  178 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~-  178 (518)
                      .+.+|||+|||+|..+..+++. +...++|+|+++.               ...++.+|..+ ++++++||+|++.--+ 
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~  165 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI  165 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence            4569999999999999888764 3358999998741               12245677765 6788999999985310 


Q ss_pred             ----eeccC------C--------------hHHHHHHHHhcccCCcEEEEEecC
Q 010086          179 ----LEKAS------K--------------PLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       179 ----l~~~~------d--------------p~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                          ++++.      .              -..+++++.|+|||||.+++..+.
T Consensus       166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~  219 (251)
T TIGR03534       166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY  219 (251)
T ss_pred             chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence                11111      0              125678999999999999997653

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.51  E-value=3.6e-07  Score=88.23  Aligned_cols=90  Identities=16%  Similarity=0.134  Sum_probs=63.9

Q ss_pred             CCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------CC--cEEeccCCCCCCCCCceeEEEEcCceeeccC
Q 010086          117 SAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------KP--LVISGEGHRIPFDGNTFDFVFVGGARLEKAS  183 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------~~--l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~  183 (518)
                      -.++|++|||.|.++..|+... .+++++|+++.           .+  .+++++..+ ..|++.||+|+.+.+ +..+.
T Consensus        44 y~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P~~~FDLIV~SEV-lYYL~  120 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGLPHVEWIQADVPE-FWPEGRFDLIVLSEV-LYYLD  120 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES--GGGSS
T ss_pred             cceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCC-CCCCCCeeEEEEehH-hHcCC
Confidence            3689999999999999998875 79999999841           12  245666644 368999999999987 77776


Q ss_pred             Ch---HHHHHHHHhcccCCcEEEEEecCC
Q 010086          184 KP---LDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       184 dp---~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      +.   ..++..+...|+|||.+++....+
T Consensus       121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~rd  149 (201)
T PF05401_consen  121 DAEDLRAALDRLVAALAPGGHLVFGHARD  149 (201)
T ss_dssp             SHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            53   357899999999999999976443

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.49  E-value=1.3e-07  Score=99.78  Aligned_cols=91  Identities=25%  Similarity=0.259  Sum_probs=79.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      +.++.+++|+|||-|......+..+...++|+|.+.+                ...++.++..+.||+|++||+|.+..+
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~  187 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV  187 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence            5678899999999999998888776678999998742                122456888899999999999999997


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                       ..|.+++..+++|+.||+||||+.+.-
T Consensus       188 -~~~~~~~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  188 -VCHAPDLEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             -cccCCcHHHHHHHHhcccCCCceEEeH
Confidence             999999999999999999999998885

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.48  E-value=8.5e-07  Score=92.05  Aligned_cols=82  Identities=11%  Similarity=0.028  Sum_probs=58.1

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------C-----------CcEEeccCCCCCCCCCceeEEEEc
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------K-----------PLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------~-----------~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      ++.+|||||||+|..+..|.+.| .+|+|+|+|+.         .           ..+..+|.+.   .+++||+|+|.
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~---l~~~fD~Vv~~  219 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES---LSGKYDTVTCL  219 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh---cCCCcCEEEEc
Confidence            57899999999999999998887 69999999852         0           0122344333   36899999999


Q ss_pred             CceeeccCChH--HHHHHHHhcccCCcEEE
Q 010086          176 GARLEKASKPL--DFASEIVRTLKPEGFAV  203 (518)
Q Consensus       176 ~~~l~~~~dp~--~~l~Ei~RVLKPGG~lv  203 (518)
                      .+ ++|+++..  .+++.+.+ +++||+++
T Consensus       220 ~v-L~H~p~~~~~~ll~~l~~-l~~g~liI  247 (315)
T PLN02585        220 DV-LIHYPQDKADGMIAHLAS-LAEKRLII  247 (315)
T ss_pred             CE-EEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence            97 88887643  34555554 45665544

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.47  E-value=9.5e-07  Score=91.94  Aligned_cols=95  Identities=13%  Similarity=0.153  Sum_probs=69.4

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcC--CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCc
Q 010086          106 QDLISEGYLSQSAKSLCVETQYGQDVFALKEIG--VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNT  168 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g--~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~S  168 (518)
                      ..+++..-++++.+|||||||+|..+..+++..  ...|+|+|+++.               ...++.+|+...+.+.+.
T Consensus        70 a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~  149 (322)
T PRK13943         70 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP  149 (322)
T ss_pred             HHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence            333333346788999999999999998877642  136999998742               122457888777766788


Q ss_pred             eeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          169 FDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ||+|++..+ ++++      ...+.++|||||.+++.+.
T Consensus       150 fD~Ii~~~g-~~~i------p~~~~~~LkpgG~Lvv~~~  181 (322)
T PRK13943        150 YDVIFVTVG-VDEV------PETWFTQLKEGGRVIVPIN  181 (322)
T ss_pred             ccEEEECCc-hHHh------HHHHHHhcCCCCEEEEEeC
Confidence            999999875 5553      2357889999999988764

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.47  E-value=1.1e-06  Score=84.50  Aligned_cols=89  Identities=17%  Similarity=0.125  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCC-CCCCCCceeEEEEcC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHR-IPFDGNTFDFVFVGG  176 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~-LPf~D~SFD~V~s~~  176 (518)
                      ++++.+|||+|||+|..+..+++. +..+++++|+++.               ...++.+|+.+ ++.-...+|.++...
T Consensus        38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~  117 (196)
T PRK07402         38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG  117 (196)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence            567899999999999998777653 2368999999741               11244566643 232223467665532


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                           ..+...+++++.|+|||||.+++...
T Consensus       118 -----~~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        118 -----GRPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             -----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence                 12456889999999999999988764

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.46  E-value=1.9e-06  Score=82.13  Aligned_cols=114  Identities=18%  Similarity=0.247  Sum_probs=78.4

Q ss_pred             CCCCC-eEEEEcCCCCHhHHHHHhcCCC-cEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086          114 LSQSA-KSLCVETQYGQDVFALKEIGVE-DSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       114 l~~~~-rvLDVGcGtG~~~~~L~~~g~~-~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      +.+.+ +|||+|||+|.+...|++.|+. ..+|+|.|+.                ...+.+.|...-.|..+.||+|...
T Consensus        64 v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDK  143 (227)
T KOG1271|consen   64 VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDK  143 (227)
T ss_pred             hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeec
Confidence            34444 9999999999999999998865 4999998842                1235577777667888999999987


Q ss_pred             CceeeccC--------ChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEec
Q 010086          176 GARLEKAS--------KPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRD  231 (518)
Q Consensus       176 ~~~l~~~~--------dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~  231 (518)
                      +. ++-+.        .+...+.-+.+.|+|||+++|+.=  ... ...+.+.|-+..+++...
T Consensus       144 GT-~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC--N~T-~dELv~~f~~~~f~~~~t  203 (227)
T KOG1271|consen  144 GT-LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC--NFT-KDELVEEFENFNFEYLST  203 (227)
T ss_pred             Cc-eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec--Ccc-HHHHHHHHhcCCeEEEEe
Confidence            75 54432        122356888999999999999742  111 134444455544444433

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.40  E-value=1e-06  Score=88.38  Aligned_cols=88  Identities=18%  Similarity=0.208  Sum_probs=67.9

Q ss_pred             CCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------CCcEEeccCCCCCCCCCceeEEEEcCceeeccCChHHHHH
Q 010086          117 SAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFAS  190 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~  190 (518)
                      ..++||||+|.|..+..++.. +.+|++.+.|..      ..-+..-+..+..=.+..||+|.|.++ |+...+|...++
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNv-LDRc~~P~~LL~  172 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNV-LDRCDRPLTLLR  172 (265)
T ss_pred             CCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhh-hhccCCHHHHHH
Confidence            468999999999999998764 578999998841      000111122222223568999999998 999999999999


Q ss_pred             HHHhcccCCcEEEEEe
Q 010086          191 EIVRTLKPEGFAVVHV  206 (518)
Q Consensus       191 Ei~RVLKPGG~lvi~~  206 (518)
                      +|++.|+|+|++++++
T Consensus       173 ~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  173 DIRRALKPNGRLILAV  188 (265)
T ss_pred             HHHHHhCCCCEEEEEE
Confidence            9999999999988875

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.40  E-value=4.1e-06  Score=85.48  Aligned_cols=91  Identities=18%  Similarity=0.134  Sum_probs=65.4

Q ss_pred             CeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC--------------C--CcEEeccCCCCCCCCCceeEEEEcCce--
Q 010086          118 AKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS--------------K--PLVISGEGHRIPFDGNTFDFVFVGGAR--  178 (518)
Q Consensus       118 ~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~--------------~--~l~~~~da~~LPf~D~SFD~V~s~~~~--  178 (518)
                      .+|||+|||+|..+..++... ..+++|+|+++.              .  ..++++|..+ +++++.||+|+|+--+  
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~  194 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID  194 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence            689999999999998887643 358999999841              1  2345676644 5666689999996210  


Q ss_pred             ----------eeccC------------ChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          179 ----------LEKAS------------KPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       179 ----------l~~~~------------dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                                ++|-+            ...+.++++.+.|||||++++.++..
T Consensus       195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~  247 (284)
T TIGR00536       195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW  247 (284)
T ss_pred             cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence                      12211            23457899999999999999988654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.38  E-value=1.2e-06  Score=94.45  Aligned_cols=93  Identities=13%  Similarity=0.146  Sum_probs=67.5

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC--------------CCcE--EeccCCCCCC--CCCceeEEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS--------------KPLV--ISGEGHRIPF--DGNTFDFVFV  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~--------------~~l~--~~~da~~LPf--~D~SFD~V~s  174 (518)
                      ..+|.+|||+|||+|..+..+++. +.+.++|+|+++.              ...+  ..+|+..+++  ++++||.|++
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll  315 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL  315 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence            567899999999999988777663 3468999999842              1112  3466665555  6789999995


Q ss_pred             ----cC-ceeeccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 010086          175 ----GG-ARLEKASK----------------PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       175 ----~~-~~l~~~~d----------------p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                          ++ +.+++.++                ..+.+.++.|+|||||.++..+
T Consensus       316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst  368 (426)
T TIGR00563       316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT  368 (426)
T ss_pred             cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence                22 22555443                2468999999999999998874

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.37  E-value=1.2e-06  Score=91.66  Aligned_cols=91  Identities=20%  Similarity=0.221  Sum_probs=64.8

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC---------C----------------CCcEEeccCCC------CCC
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS---------S----------------KPLVISGEGHR------IPF  164 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~---------~----------------~~l~~~~da~~------LPf  164 (518)
                      ++.+|||+|||-|..+..+...++..++|+|++.         +                ...++.+|...      ++.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            7889999999999998888888889999999972         1                01123454432      233


Q ss_pred             CCCceeEEEEcCceeeccCChH----HHHHHHHhcccCCcEEEEEec
Q 010086          165 DGNTFDFVFVGGARLEKASKPL----DFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       165 ~D~SFD~V~s~~~~l~~~~dp~----~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +...||+|.|.++ ||++-..+    .+++-+...|||||+++.++.
T Consensus       142 ~~~~FDvVScQFa-lHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  142 RSRKFDVVSCQFA-LHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             TTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cCCCcceeehHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            3459999999998 99875432    478999999999999999875

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.36  E-value=1.3e-06  Score=94.11  Aligned_cols=93  Identities=17%  Similarity=0.303  Sum_probs=67.3

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCC-CcEEEEecCCC--------------CCcEEeccCCCCC--CCCCceeEEEE--
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGV-EDSIGIFKKSS--------------KPLVISGEGHRIP--FDGNTFDFVFV--  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~-~~v~gID~s~~--------------~~l~~~~da~~LP--f~D~SFD~V~s--  174 (518)
                      +.++.+|||+|||+|..+..+.+.+. ..|+|+|+++.              ...++.+|+.+++  +++++||.|++  
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~  321 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA  321 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence            56889999999999999887776532 58999999852              1234678888765  45789999994  


Q ss_pred             --cCc-eeec------cCCh----------HHHHHHHHhcccCCcEEEEEe
Q 010086          175 --GGA-RLEK------ASKP----------LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       175 --~~~-~l~~------~~dp----------~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                        +.. .+.+      ...+          .+.+.++.+.|||||.+++.+
T Consensus       322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst  372 (427)
T PRK10901        322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT  372 (427)
T ss_pred             CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence              221 1211      1122          257899999999999998765

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.36  E-value=7.8e-07  Score=91.14  Aligned_cols=95  Identities=20%  Similarity=0.270  Sum_probs=74.1

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------------CCcEEecc------CCCCCCC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------------KPLVISGE------GHRIPFD  165 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------------~~l~~~~d------a~~LPf~  165 (518)
                      +.++++.+|++|||-|..+..+...|...++|||+++-                     +..++.+|      ...++++
T Consensus       114 y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~  193 (389)
T KOG1975|consen  114 YTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK  193 (389)
T ss_pred             HhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence            45788999999999999888887788889999999741                     12344444      2345788


Q ss_pred             CCceeEEEEcCceeeccC----ChHHHHHHHHhcccCCcEEEEEecC
Q 010086          166 GNTFDFVFVGGARLEKAS----KPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       166 D~SFD~V~s~~~~l~~~~----dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      |-+||+|.|.++ ||..-    ....+++-+.+.|||||+++-++..
T Consensus       194 dp~fDivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd  239 (389)
T KOG1975|consen  194 DPRFDIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPD  239 (389)
T ss_pred             CCCcceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence            888999999987 77653    2335789999999999999998753

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=2.4e-06  Score=83.44  Aligned_cols=97  Identities=19%  Similarity=0.274  Sum_probs=73.0

Q ss_pred             HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCC-C
Q 010086          103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFD-G  166 (518)
Q Consensus       103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~-D  166 (518)
                      .+...+.+.--++++++||+||||+|..+..|++.. .+|+.|+..+.               ...++++|+.. -++ .
T Consensus        59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~-G~~~~  136 (209)
T COG2518          59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK-GWPEE  136 (209)
T ss_pred             HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc-CCCCC
Confidence            344444555568999999999999999999999875 59999998631               13345777654 343 4


Q ss_pred             CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          167 NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       167 ~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +-||.|+...+ ...++.+      +.+-|||||++++.++.
T Consensus       137 aPyD~I~Vtaa-a~~vP~~------Ll~QL~~gGrlv~PvG~  171 (209)
T COG2518         137 APYDRIIVTAA-APEVPEA------LLDQLKPGGRLVIPVGS  171 (209)
T ss_pred             CCcCEEEEeec-cCCCCHH------HHHhcccCCEEEEEEcc
Confidence            88999999886 7766433      46789999999999873

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.35  E-value=1.4e-06  Score=94.17  Aligned_cols=93  Identities=15%  Similarity=0.213  Sum_probs=68.6

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC---------------CCcEEeccCCCCC----CCCCceeEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS---------------KPLVISGEGHRIP----FDGNTFDFV  172 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~---------------~~l~~~~da~~LP----f~D~SFD~V  172 (518)
                      +++|.+|||+|||+|..+..+++. + .+.++++|+++.               ...++.+|+..++    +.+++||.|
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  329 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI  329 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence            467899999999999998877764 2 358999999742               1234578888776    667899999


Q ss_pred             EEc----C-ceeeccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 010086          173 FVG----G-ARLEKASK----------------PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       173 ~s~----~-~~l~~~~d----------------p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ++.    + ..+++-++                ..+.+.++.+.|||||+++..+
T Consensus       330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst  384 (434)
T PRK14901        330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT  384 (434)
T ss_pred             EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            952    1 12444333                3467899999999999987764

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.34  E-value=6.2e-06  Score=82.77  Aligned_cols=94  Identities=17%  Similarity=0.254  Sum_probs=65.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      ..++.+|||+|||+|..+..++... ...++|+|+++.               ...++.+|... ++++++||+|+++--
T Consensus       106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npP  184 (275)
T PRK09328        106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPP  184 (275)
T ss_pred             ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCC
Confidence            3567899999999999988887643 468999999741               11234566533 445789999998531


Q ss_pred             ee-----e--------c------------cCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          178 RL-----E--------K------------ASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       178 ~l-----~--------~------------~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +.     +        |            +....++++++.++|||||++++..+.
T Consensus       185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~  240 (275)
T PRK09328        185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY  240 (275)
T ss_pred             cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence            01     0        0            011245678888999999999997753

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.31  E-value=3.2e-06  Score=87.44  Aligned_cols=107  Identities=12%  Similarity=0.090  Sum_probs=72.3

Q ss_pred             CeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCce--
Q 010086          118 AKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGAR--  178 (518)
Q Consensus       118 ~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~~--  178 (518)
                      .+|||+|||+|..+..++.. +..+++|+|+|+.                ...++.+|..+ ++++++||+|+|+-=+  
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~  213 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD  213 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence            68999999999999888764 3468999999841                12245677543 3456789999996200  


Q ss_pred             ----------eeccC------------ChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEE
Q 010086          179 ----------LEKAS------------KPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKS  229 (518)
Q Consensus       179 ----------l~~~~------------dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~  229 (518)
                                ++|-+            ....+++++.+.|||||.+++.++...    ..+..+|++...++.
T Consensus       214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~----~~~~~~~~~~~~~~~  282 (307)
T PRK11805        214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSR----VHLEEAYPDVPFTWL  282 (307)
T ss_pred             ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCH----HHHHHHHhhCCCEEE
Confidence                      11111            013568999999999999999876432    346666666554444

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.31  E-value=1.4e-06  Score=85.33  Aligned_cols=99  Identities=21%  Similarity=0.315  Sum_probs=66.5

Q ss_pred             HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC---------------CCcEEeccCCCCCCC
Q 010086          103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS---------------KPLVISGEGHRIPFD  165 (518)
Q Consensus       103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~  165 (518)
                      .+...+++.-.+++|++|||||||+|..+..|+.+ | ...|++||..+.               ...++.+|+..---+
T Consensus        59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~  138 (209)
T PF01135_consen   59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE  138 (209)
T ss_dssp             HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence            33444444445899999999999999999888874 4 347999998641               123567787653334


Q ss_pred             CCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          166 GNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       166 D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      .+.||.|++..+ ...+  |    .++.+-||+||++++.+..
T Consensus       139 ~apfD~I~v~~a-~~~i--p----~~l~~qL~~gGrLV~pi~~  174 (209)
T PF01135_consen  139 EAPFDRIIVTAA-VPEI--P----EALLEQLKPGGRLVAPIGQ  174 (209)
T ss_dssp             G-SEEEEEESSB-BSS--------HHHHHTEEEEEEEEEEESS
T ss_pred             CCCcCEEEEeec-cchH--H----HHHHHhcCCCcEEEEEEcc
Confidence            578999999886 6543  3    3467889999999998864

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.30  E-value=2.7e-06  Score=83.89  Aligned_cols=118  Identities=18%  Similarity=0.297  Sum_probs=79.7

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------------C---------CcEEeccCCCCCCC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------------K---------PLVISGEGHRIPFD  165 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------------~---------~l~~~~da~~LPf~  165 (518)
                      ..+++.+||+.|||.|..+..|++.| .+|+|+|+|+.                  .         ..+.++|.-+++-.
T Consensus        34 ~~~~~~rvLvPgCG~g~D~~~La~~G-~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~  112 (218)
T PF05724_consen   34 ALKPGGRVLVPGCGKGYDMLWLAEQG-HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE  112 (218)
T ss_dssp             TTSTSEEEEETTTTTSCHHHHHHHTT-EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred             CCCCCCeEEEeCCCChHHHHHHHHCC-CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence            45678899999999999999999998 59999999841                  0         01346787777654


Q ss_pred             C-CceeEEEEcCceeeccC--ChHHHHHHHHhcccCCcEE-EEEecC------CCcc--CchhHhhhcc-CccEEEEecc
Q 010086          166 G-NTFDFVFVGGARLEKAS--KPLDFASEIVRTLKPEGFA-VVHVRA------KDEY--SFNSFLDLFN-SCKLVKSRDI  232 (518)
Q Consensus       166 D-~SFD~V~s~~~~l~~~~--dp~~~l~Ei~RVLKPGG~l-vi~~~~------~~~~--s~~~~~~lf~-~~~~v~~~~v  232 (518)
                      + +.||+|+-..+ |+-++  .-.+.++-+.+.|||||.+ .+++..      ++++  +...+..+|. .|++..+...
T Consensus       113 ~~g~fD~iyDr~~-l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~~~f~i~~l~~~  191 (218)
T PF05724_consen  113 DVGKFDLIYDRTF-LCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFGPGFEIEELEEE  191 (218)
T ss_dssp             CHHSEEEEEECSS-TTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHTTTEEEEEEEEE
T ss_pred             hcCCceEEEEecc-cccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhcCCcEEEEEecc
Confidence            4 48999998875 65543  1246789999999999994 333321      1222  3345677775 4566666543

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.29  E-value=2.2e-06  Score=84.52  Aligned_cols=97  Identities=23%  Similarity=0.284  Sum_probs=73.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------C------CcEEeccCCCC--CCCCCceeEEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------K------PLVISGEGHRI--PFDGNTFDFVFV  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------~------~l~~~~da~~L--Pf~D~SFD~V~s  174 (518)
                      .+.|.+|||.+.|-|..+....+.|...|+.++.++.           +      ..++.||+.+.  .|+|+|||+|+-
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH  211 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH  211 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence            4569999999999999987777778669999987642           1      12457888776  699999999985


Q ss_pred             cCceeeccC--ChHHHHHHHHhcccCCcEEEEEecCCC
Q 010086          175 GGARLEKAS--KPLDFASEIVRTLKPEGFAVVHVRAKD  210 (518)
Q Consensus       175 ~~~~l~~~~--dp~~~l~Ei~RVLKPGG~lvi~~~~~~  210 (518)
                      ---.|.+.-  .-+.+.+|++|||||||.++.-+++..
T Consensus       212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg  249 (287)
T COG2521         212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG  249 (287)
T ss_pred             CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence            331233322  245789999999999999998887554

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.29  E-value=2.2e-06  Score=80.57  Aligned_cols=94  Identities=13%  Similarity=0.042  Sum_probs=67.4

Q ss_pred             HHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCCCceeEEEE
Q 010086          108 LISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGNTFDFVFV  174 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~SFD~V~s  174 (518)
                      +++.--+.++.++||+|||+|..+..+.+.+ .+++++|+++.             ...++.+|+.+++++++.||.|++
T Consensus         5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~   83 (169)
T smart00650        5 IVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVG   83 (169)
T ss_pred             HHHhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEE
Confidence            3443345678899999999999998888775 79999999841             123568999999999989999999


Q ss_pred             cCceeeccCChHHHHHHHHh--cccCCcEEEEEe
Q 010086          175 GGARLEKASKPLDFASEIVR--TLKPEGFAVVHV  206 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~R--VLKPGG~lvi~~  206 (518)
                      +.- + |..  ...+..+.+  -+.++|+++++-
T Consensus        84 n~P-y-~~~--~~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       84 NLP-Y-NIS--TPILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             CCC-c-ccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence            763 3 322  223333332  245889998875

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.29  E-value=5.5e-06  Score=84.75  Aligned_cols=103  Identities=14%  Similarity=0.153  Sum_probs=70.0

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCc-
Q 010086          116 QSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGA-  177 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~-  177 (518)
                      ++.+|||+|||+|..+..+++.. ..+++|+|+++.                ...++.+|..+ ++++++||+|+++-= 
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy  199 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY  199 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence            45799999999999998887643 358999999841                11245677643 456778999999620 


Q ss_pred             ----eeecc-----CCh--------------HHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccC
Q 010086          178 ----RLEKA-----SKP--------------LDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNS  223 (518)
Q Consensus       178 ----~l~~~-----~dp--------------~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~  223 (518)
                          .+.++     ..|              ..+++++.++|||||++++.++...    ..+..++.+
T Consensus       200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~----~~v~~~~~~  264 (284)
T TIGR03533       200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM----EALEEAYPD  264 (284)
T ss_pred             CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH----HHHHHHHHh
Confidence                01111     012              3568999999999999999886422    355555554

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.28  E-value=6e-07  Score=88.15  Aligned_cols=94  Identities=17%  Similarity=0.211  Sum_probs=78.9

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC----------CCCc---EEeccCCCCCCCCCceeEEEEcCceeecc
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS----------SKPL---VISGEGHRIPFDGNTFDFVFVGGARLEKA  182 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~----------~~~l---~~~~da~~LPf~D~SFD~V~s~~~~l~~~  182 (518)
                      ....++|||||-|.....|...|+.+.+-+|.|-          .|..   ...+|.+.|||.++|||+|+++.+ +||.
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls-lHW~  150 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLS-LHWT  150 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhh-hhhh
Confidence            4567999999999999999888888999999872          1222   236899999999999999999997 9999


Q ss_pred             CChHHHHHHHHhcccCCcEEEEEecCCC
Q 010086          183 SKPLDFASEIVRTLKPEGFAVVHVRAKD  210 (518)
Q Consensus       183 ~dp~~~l~Ei~RVLKPGG~lvi~~~~~~  210 (518)
                      .+....+..++-.|||+|.++-..-..+
T Consensus       151 NdLPg~m~~ck~~lKPDg~Fiasmlggd  178 (325)
T KOG2940|consen  151 NDLPGSMIQCKLALKPDGLFIASMLGGD  178 (325)
T ss_pred             ccCchHHHHHHHhcCCCccchhHHhccc
Confidence            9888889999999999999887644444

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.22  E-value=4.2e-06  Score=90.70  Aligned_cols=92  Identities=14%  Similarity=0.159  Sum_probs=65.3

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEE--
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFV--  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s--  174 (518)
                      ..+|.+|||+|||+|..+..+++.  +...|+|+|+++.               ...++.+|+..++ ++++||.|++  
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~  326 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDA  326 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence            457889999999999988766652  2358999999852               1124577887765 6789999995  


Q ss_pred             --cC-ceeecc------CC----------hHHHHHHHHhcccCCcEEEEEe
Q 010086          175 --GG-ARLEKA------SK----------PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       175 --~~-~~l~~~------~d----------p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                        ++ ..+..-      .+          ..+.+.++.+.|||||+++..+
T Consensus       327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst  377 (445)
T PRK14904        327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT  377 (445)
T ss_pred             CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence              22 112211      11          2357999999999999998875

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.20  E-value=2.4e-05  Score=83.84  Aligned_cols=106  Identities=10%  Similarity=0.054  Sum_probs=69.3

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC--------------CCcEEeccCCCCCCC-CCceeEEEEcCc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS--------------KPLVISGEGHRIPFD-GNTFDFVFVGGA  177 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~--------------~~l~~~~da~~LPf~-D~SFD~V~s~~~  177 (518)
                      ++++.++||+|||+|..+..++.. +..+++|+|+|+.              ...++++|..+..++ +++||+|+|+-=
T Consensus       249 l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPP  328 (423)
T PRK14966        249 LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPP  328 (423)
T ss_pred             cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCC
Confidence            356679999999999998877653 3468999999841              122456776554343 468999999642


Q ss_pred             eeec----c----------------CCh----HHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhcc
Q 010086          178 RLEK----A----------------SKP----LDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFN  222 (518)
Q Consensus       178 ~l~~----~----------------~dp----~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~  222 (518)
                      ++..    .                .+.    .+.++++.+.|||||.+++.++....   ..+.++++
T Consensus       329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~---e~V~~ll~  394 (423)
T PRK14966        329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQG---AAVRGVLA  394 (423)
T ss_pred             CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHH---HHHHHHHH
Confidence            1110    0                111    24567778899999999988765432   34444443

>PRK00811 spermidine synthase; Provisional

Probab=98.20  E-value=5.1e-06  Score=84.95  Aligned_cols=91  Identities=19%  Similarity=0.303  Sum_probs=65.6

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC------------------CC--cEEeccCCC-CCCCCCceeEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS------------------KP--LVISGEGHR-IPFDGNTFDFV  172 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~------------------~~--l~~~~da~~-LPf~D~SFD~V  172 (518)
                      +...+||+||||+|..+..+.+. +..+|++||+++.                  .+  .++.+|+.. ++..+++||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            45679999999999998776664 5678999999741                  11  235677654 34457899999


Q ss_pred             EEcCceeeccCC-----hHHHHHHHHhcccCCcEEEEEec
Q 010086          173 FVGGARLEKASK-----PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       173 ~s~~~~l~~~~d-----p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++...  +...-     ...+++++.|.|||||++++..+
T Consensus       155 i~D~~--dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~  192 (283)
T PRK00811        155 IVDST--DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG  192 (283)
T ss_pred             EECCC--CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence            99652  22211     14678999999999999998754

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.19  E-value=3.6e-06  Score=91.00  Aligned_cols=94  Identities=15%  Similarity=0.191  Sum_probs=67.7

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC---------------CCcEEeccCCCCC-CCCCceeEEEEc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS---------------KPLVISGEGHRIP-FDGNTFDFVFVG  175 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~---------------~~l~~~~da~~LP-f~D~SFD~V~s~  175 (518)
                      +++|.+|||+|||+|..+..+++.  +...|+++|+++.               ...+..+|+..++ +.+++||.|++.
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D  314 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD  314 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence            568899999999999988777663  2368999999842               1124578888876 667899999952


Q ss_pred             ----C-ceeeccC----------------ChHHHHHHHHhcccCCcEEEEEec
Q 010086          176 ----G-ARLEKAS----------------KPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       176 ----~-~~l~~~~----------------dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                          + ..+.+-+                ...+.+.++.+.|||||+++..+-
T Consensus       315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC  367 (431)
T PRK14903        315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC  367 (431)
T ss_pred             CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence                2 1122211                123568899999999999888753

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.18  E-value=2.4e-06  Score=86.45  Aligned_cols=93  Identities=23%  Similarity=0.209  Sum_probs=71.9

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC--------CCC-cEEeccCCCCCCCCCceeEEEEcCceeeccCC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS--------SKP-LVISGEGHRIPFDGNTFDFVFVGGARLEKASK  184 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~--------~~~-l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~d  184 (518)
                      ...+.-+||+|||.|.....   .....++|.|++.        ... .+..+|+.++|+++.+||++++..+ +||+..
T Consensus        43 ~~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiav-ihhlsT  118 (293)
T KOG1331|consen   43 QPTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAV-IHHLST  118 (293)
T ss_pred             cCCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhh-hhhhhh
Confidence            34588999999999886421   1113577788752        223 4678999999999999999999987 999864


Q ss_pred             h---HHHHHHHHhcccCCcEEEEEecCCC
Q 010086          185 P---LDFASEIVRTLKPEGFAVVHVRAKD  210 (518)
Q Consensus       185 p---~~~l~Ei~RVLKPGG~lvi~~~~~~  210 (518)
                      -   .++++|+.|+|||||...+.++...
T Consensus       119 ~~RR~~~l~e~~r~lrpgg~~lvyvwa~~  147 (293)
T KOG1331|consen  119 RERRERALEELLRVLRPGGNALVYVWALE  147 (293)
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence            3   5789999999999999888776544

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.18  E-value=5.7e-07  Score=88.36  Aligned_cols=104  Identities=16%  Similarity=0.225  Sum_probs=76.1

Q ss_pred             HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------CCc---EEeccCC-CCC-CCCCcee
Q 010086          103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------KPL---VISGEGH-RIP-FDGNTFD  170 (518)
Q Consensus       103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------~~l---~~~~da~-~LP-f~D~SFD  170 (518)
                      .+++.++...-..+-.++||+|||||.....|+..- .+.+|+|+|..       ...   ..++++. -++ ..++.||
T Consensus       112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D  190 (287)
T COG4976         112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD  190 (287)
T ss_pred             HHHHHHHHhccCCccceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence            344444443333345799999999999999888763 68999999852       011   1234443 223 4578999


Q ss_pred             EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +|.+..+ |..+-+.+.++.-+.+.|+|||.+++.+..
T Consensus       191 Li~AaDV-l~YlG~Le~~~~~aa~~L~~gGlfaFSvE~  227 (287)
T COG4976         191 LIVAADV-LPYLGALEGLFAGAAGLLAPGGLFAFSVET  227 (287)
T ss_pred             chhhhhH-HHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence            9999998 888888888999999999999999998743

>PRK04457 spermidine synthase; Provisional

Probab=98.18  E-value=9.2e-06  Score=82.19  Aligned_cols=93  Identities=15%  Similarity=0.218  Sum_probs=65.5

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC-----------C---C--cEEeccCCC-CCCCCCceeEEEEcC
Q 010086          115 SQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS-----------K---P--LVISGEGHR-IPFDGNTFDFVFVGG  176 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~-----------~---~--l~~~~da~~-LPf~D~SFD~V~s~~  176 (518)
                      ++..+|||||||+|..+..+.+ .+..+++++|+++.           +   +  .++.+|+.+ ++-..++||+|++..
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            4567899999999999987765 34468999999741           1   1  235677643 222346899999854


Q ss_pred             ceeeccCC-----hHHHHHHHHhcccCCcEEEEEecCC
Q 010086          177 ARLEKASK-----PLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       177 ~~l~~~~d-----p~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                        ++...-     ...+++++.++|+|||++++.+...
T Consensus       145 --~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~  180 (262)
T PRK04457        145 --FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR  180 (262)
T ss_pred             --CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence              432211     2588999999999999999975443

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.17  E-value=2.1e-05  Score=85.25  Aligned_cols=124  Identities=12%  Similarity=0.137  Sum_probs=83.8

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCC----CCCCCCceeEEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHR----IPFDGNTFDFVFV  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~----LPf~D~SFD~V~s  174 (518)
                      +.++.+|||+|||+|..+..+++.+ ..|+|+|+++.               ...++.+|+.+    +|+++++||+|++
T Consensus       295 ~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~  373 (443)
T PRK13168        295 PQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL  373 (443)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence            4678899999999999998888775 79999999841               12345677643    4577889999998


Q ss_pred             cCceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhh-ccCccEEEEeccCCCCCCccceeEEE
Q 010086          175 GGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDL-FNSCKLVKSRDIDGIDSSLPYIREIV  246 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~l-f~~~~~v~~~~v~~~~~~~p~~~~vv  246 (518)
                      .--   .. .....++.+.+ ++|++++++.......  ...+..| -..|++.++.-+|.|=.+ |++-.++
T Consensus       374 dPP---r~-g~~~~~~~l~~-~~~~~ivyvSCnp~tl--aRDl~~L~~~gY~l~~i~~~DmFP~T-~HvE~v~  438 (443)
T PRK13168        374 DPP---RA-GAAEVMQALAK-LGPKRIVYVSCNPATL--ARDAGVLVEAGYRLKRAGMLDMFPHT-GHVESMA  438 (443)
T ss_pred             CcC---Cc-ChHHHHHHHHh-cCCCeEEEEEeChHHh--hccHHHHhhCCcEEEEEEEeccCCCC-CcEEEEE
Confidence            531   11 12245555555 7999999998643221  1233333 256999999999986554 3444333

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.17  E-value=1.1e-05  Score=77.37  Aligned_cols=89  Identities=19%  Similarity=0.234  Sum_probs=67.1

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC---------------CCcEEeccCCCC-CCCCCceeEEEEc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS---------------KPLVISGEGHRI-PFDGNTFDFVFVG  175 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~---------------~~l~~~~da~~L-Pf~D~SFD~V~s~  175 (518)
                      -++++++++|||||||..+..++..+ ..+|++||.++.               ...++.|++.+. + +-.+||.||..
T Consensus        31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~-~~~~~daiFIG  109 (187)
T COG2242          31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP-DLPSPDAIFIG  109 (187)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc-CCCCCCEEEEC
Confidence            37899999999999999997776544 469999997531               112457777553 3 22289999998


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +.     -+....++.+...|||||.+++...
T Consensus       110 Gg-----~~i~~ile~~~~~l~~ggrlV~nai  136 (187)
T COG2242         110 GG-----GNIEEILEAAWERLKPGGRLVANAI  136 (187)
T ss_pred             CC-----CCHHHHHHHHHHHcCcCCeEEEEee
Confidence            85     2356788999999999999999754

>PHA03411 putative methyltransferase; Provisional

Probab=98.17  E-value=7.9e-06  Score=83.09  Aligned_cols=94  Identities=14%  Similarity=0.105  Sum_probs=67.6

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------CCcEEeccCCCCCCCCCceeEEEEcCceeeccCC
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASK  184 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~d  184 (518)
                      ...+|||+|||+|..+..+.+. +..+++|+|+++.          ...++.+|..+++ .+.+||+|+++-- +.|...
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPP-F~~l~~  141 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPP-FGKINT  141 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCC-ccccCc
Confidence            4579999999999987666543 2368999999852          1235678887765 3578999999775 555321


Q ss_pred             --------------------hHHHHHHHHhcccCCcEEEEEecCCCc
Q 010086          185 --------------------PLDFASEIVRTLKPEGFAVVHVRAKDE  211 (518)
Q Consensus       185 --------------------p~~~l~Ei~RVLKPGG~lvi~~~~~~~  211 (518)
                                          ..++++...++|||+|.+.+..+..+.
T Consensus       142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~  188 (279)
T PHA03411        142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY  188 (279)
T ss_pred             hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc
Confidence                                135667889999999988777655443

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.15  E-value=4.3e-06  Score=81.04  Aligned_cols=85  Identities=19%  Similarity=0.272  Sum_probs=62.0

Q ss_pred             CeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCC-CC--CCCCceeEEEEcCce
Q 010086          118 AKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHR-IP--FDGNTFDFVFVGGAR  178 (518)
Q Consensus       118 ~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~-LP--f~D~SFD~V~s~~~~  178 (518)
                      .-+||||||.|..+..+++. .-..++|||+...               ...++++|+.. |+  ++++++|.|+..+  
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F--   96 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF--   96 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC--
Confidence            37899999999999888764 4479999998631               12356788887 33  6789999999865  


Q ss_pred             eeccCCh-------------HHHHHHHHhcccCCcEEEEEecC
Q 010086          179 LEKASKP-------------LDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       179 l~~~~dp-------------~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                          +||             ..++.+++|+|||||.+.+.+..
T Consensus        97 ----PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~  135 (195)
T PF02390_consen   97 ----PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV  135 (195)
T ss_dssp             ---------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred             ----CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence                333             25899999999999999998854

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.14  E-value=4.9e-06  Score=89.58  Aligned_cols=92  Identities=25%  Similarity=0.306  Sum_probs=75.5

Q ss_pred             CCCCCC-eEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------C--CcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          113 YLSQSA-KSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------K--PLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       113 ll~~~~-rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~--~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      ++++.. ++|-+|||...+.+.+.+.|+.+++.+|.|+-            .  ..+...|...+.|+|+|||.|+..+.
T Consensus        44 ~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGt  123 (482)
T KOG2352|consen   44 YLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGT  123 (482)
T ss_pred             hhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCc
Confidence            456777 99999999999999999999999999999841            1  12457899999999999999999997


Q ss_pred             eeeccCCh----------HHHHHHHHhcccCCcEEEEE
Q 010086          178 RLEKASKP----------LDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       178 ~l~~~~dp----------~~~l~Ei~RVLKPGG~lvi~  205 (518)
                       ++++.-+          ...+.|++|||+|||+++..
T Consensus       124 -lDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv  160 (482)
T KOG2352|consen  124 -LDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV  160 (482)
T ss_pred             -cccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence             8887422          13578999999999996543

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.12  E-value=6.3e-06  Score=83.31  Aligned_cols=93  Identities=15%  Similarity=0.173  Sum_probs=66.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEc-
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVG-  175 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~-  175 (518)
                      ++++.+|||+|||+|..+..+++. + .+.|+++|+++.               ...++.+|+..++...++||.|++. 
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~  148 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA  148 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence            468899999999999998777653 2 258999999842               1124567877777667789999952 


Q ss_pred             ---C-ceeeccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 010086          176 ---G-ARLEKASK----------------PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       176 ---~-~~l~~~~d----------------p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                         + .++.+-++                ..+.++++.+.|||||+++..+
T Consensus       149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst  199 (264)
T TIGR00446       149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST  199 (264)
T ss_pred             CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence               1 11222111                1347899999999999988764

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.11  E-value=9.3e-06  Score=87.96  Aligned_cols=92  Identities=13%  Similarity=0.200  Sum_probs=65.0

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC---------------CCcEEeccCCCCC--CCCCceeEEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS---------------KPLVISGEGHRIP--FDGNTFDFVFV  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~---------------~~l~~~~da~~LP--f~D~SFD~V~s  174 (518)
                      ++++.+|||+|||+|..+..+++.  +...++++|+++.               ...++.+|+.+++  ++ ++||.|++
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~  326 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV  326 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence            467889999999999998777663  2468999999742               1234578887763  44 78999996


Q ss_pred             cC-----ceeeccC------C----------hHHHHHHHHhcccCCcEEEEEe
Q 010086          175 GG-----ARLEKAS------K----------PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       175 ~~-----~~l~~~~------d----------p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ..     ..+.+-+      .          ....+.++.|+|||||.++..+
T Consensus       327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst  379 (444)
T PRK14902        327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST  379 (444)
T ss_pred             cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence            42     1122211      1          1247899999999999998653

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.00  E-value=3.2e-05  Score=75.81  Aligned_cols=86  Identities=19%  Similarity=0.225  Sum_probs=71.3

Q ss_pred             CeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCCCcEEeccCCCCCCC---CCceeEEEEcCceeeccCChH---HHHHH
Q 010086          118 AKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFD---GNTFDFVFVGGARLEKASKPL---DFASE  191 (518)
Q Consensus       118 ~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~~l~~~~da~~LPf~---D~SFD~V~s~~~~l~~~~dp~---~~l~E  191 (518)
                      -++|||||=+....  ....+.-+|+.||+.+..+.+.+.|..+.|.|   ++.||+|.++.+ |..+++|.   ++++-
T Consensus        53 lrlLEVGals~~N~--~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLV-LNfVP~p~~RG~Ml~r  129 (219)
T PF11968_consen   53 LRLLEVGALSTDNA--CSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLV-LNFVPDPKQRGEMLRR  129 (219)
T ss_pred             ceEEeecccCCCCc--ccccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEE-EeeCCCHHHHHHHHHH
Confidence            59999998754433  22345568999999988888999999998885   889999999998 99999986   58899


Q ss_pred             HHhcccCCcE-----EEEEe
Q 010086          192 IVRTLKPEGF-----AVVHV  206 (518)
Q Consensus       192 i~RVLKPGG~-----lvi~~  206 (518)
                      +++.|||+|.     +++.+
T Consensus       130 ~~~fL~~~g~~~~~~LFlVl  149 (219)
T PF11968_consen  130 AHKFLKPPGLSLFPSLFLVL  149 (219)
T ss_pred             HHHHhCCCCccCcceEEEEe
Confidence            9999999999     77765

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=97.99  E-value=6.4e-05  Score=77.12  Aligned_cols=111  Identities=16%  Similarity=0.223  Sum_probs=74.8

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC-------------CC--cEEeccCCCCCCCCCceeEEEEcCce
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS-------------KP--LVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~-------------~~--l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      ..+.+|||+|||.|.+...+++.. ...++-+|++..             ..  .+..+|. -.+-.+ +||+|+|+-= 
T Consensus       157 ~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~-~~~v~~-kfd~IisNPP-  233 (300)
T COG2813         157 DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNL-YEPVEG-KFDLIISNPP-  233 (300)
T ss_pred             cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc-cccccc-cccEEEeCCC-
Confidence            445699999999999998887754 568999998721             11  2333333 335555 9999999874 


Q ss_pred             eeccCC-----hHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEE
Q 010086          179 LEKASK-----PLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKS  229 (518)
Q Consensus       179 l~~~~d-----p~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~  229 (518)
                      ||.=.+     -++++.+..+.|++||.+.|.......|. .-+.++|.+++++.-
T Consensus       234 fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~-~~L~~~Fg~v~~la~  288 (300)
T COG2813         234 FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYE-KKLKELFGNVEVLAK  288 (300)
T ss_pred             ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChH-HHHHHhcCCEEEEEe
Confidence            553221     13688999999999999888765333332 234556777666553

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.97  E-value=8.4e-05  Score=77.02  Aligned_cols=115  Identities=10%  Similarity=0.052  Sum_probs=77.9

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCC-CCCceeEEEEcCcee
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPF-DGNTFDFVFVGGARL  179 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf-~D~SFD~V~s~~~~l  179 (518)
                      ++.+|||+|||+|..+..+++.+ .+|+|+|+++.               ...++++|+.+++. .++.||+|++.--  
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP--  249 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP--  249 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC--
Confidence            46899999999999999998876 79999999741               12356788876543 3568999998631  


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCCC
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSS  238 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~  238 (518)
                      ..  .-...+.++..-++|++++++......  -...+..+ ..|++.++.-+|.|=.+
T Consensus       250 r~--G~~~~~~~~l~~~~~~~ivyvsc~p~t--~~rd~~~l-~~y~~~~~~~~DmFP~T  303 (315)
T PRK03522        250 RR--GIGKELCDYLSQMAPRFILYSSCNAQT--MAKDLAHL-PGYRIERVQLFDMFPHT  303 (315)
T ss_pred             CC--CccHHHHHHHHHcCCCeEEEEECCccc--chhHHhhc-cCcEEEEEEEeccCCCC
Confidence            00  001223344445788888887764322  22344444 78999999999886554

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.97  E-value=6.9e-05  Score=75.22  Aligned_cols=134  Identities=13%  Similarity=0.124  Sum_probs=82.5

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------------CCcEEeccCCCCC--CCCCceeEEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------------KPLVISGEGHRIP--FDGNTFDFVFV  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------------~~l~~~~da~~LP--f~D~SFD~V~s  174 (518)
                      .....+|||+|||+|.....+++. ....++||++.+.                ...++++|..+..  +.-++||+|+|
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~  121 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC  121 (248)
T ss_pred             cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence            345789999999999999888875 4479999998731                2335677877663  44558999999


Q ss_pred             cCceeecc----C-------------ChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCc--cEEEEeccCCC
Q 010086          175 GGARLEKA----S-------------KPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSC--KLVKSRDIDGI  235 (518)
Q Consensus       175 ~~~~l~~~----~-------------dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~--~~v~~~~v~~~  235 (518)
                      +-=++.--    +             +.+..++-..+.|||||.+++......   +..+..+.++|  ..-++.-|-+.
T Consensus       122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er---l~ei~~~l~~~~~~~k~i~~V~p~  198 (248)
T COG4123         122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER---LAEIIELLKSYNLEPKRIQFVYPK  198 (248)
T ss_pred             CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH---HHHHHHHHHhcCCCceEEEEecCC
Confidence            75212111    1             234567778889999999988764322   23444444443  22222222222


Q ss_pred             CCCccceeEEEEeec
Q 010086          236 DSSLPYIREIVLKKE  250 (518)
Q Consensus       236 ~~~~p~~~~vv~kK~  250 (518)
                      -..-|+.-.+..+|.
T Consensus       199 ~~k~A~~vLv~~~k~  213 (248)
T COG4123         199 IGKAANRVLVEAIKG  213 (248)
T ss_pred             CCCcceEEEEEEecC
Confidence            222234445666665

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.96  E-value=9.4e-06  Score=80.47  Aligned_cols=105  Identities=17%  Similarity=0.121  Sum_probs=68.6

Q ss_pred             hHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cCC--CcEEEEecCCCC-----------Cc-----EE--ecc
Q 010086          100 FYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKE-IGV--EDSIGIFKKSSK-----------PL-----VI--SGE  158 (518)
Q Consensus       100 ~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g~--~~v~gID~s~~~-----------~l-----~~--~~d  158 (518)
                      ++..-|.+|....--.+ .+||+||||.|+.+.-+-+ ..-  -.+++.|.|+..           +.     +.  ..+
T Consensus        56 wL~~Efpel~~~~~~~~-~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~  134 (264)
T KOG2361|consen   56 WLLREFPELLPVDEKSA-ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSP  134 (264)
T ss_pred             HHHHhhHHhhCccccCh-hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccch
Confidence            34444555543322122 2899999999998854443 221  478999988521           11     11  122


Q ss_pred             CCCCCCCCCceeEEEEcCceeeccC--ChHHHHHHHHhcccCCcEEEEEe
Q 010086          159 GHRIPFDGNTFDFVFVGGARLEKAS--KPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       159 a~~LPf~D~SFD~V~s~~~~l~~~~--dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ...-|...+++|+|++.++ |.-+.  .-..++..+.|+|||||.+++-.
T Consensus       135 ~~~~~~~~~svD~it~IFv-LSAi~pek~~~a~~nl~~llKPGG~llfrD  183 (264)
T KOG2361|consen  135 SLKEPPEEGSVDIITLIFV-LSAIHPEKMQSVIKNLRTLLKPGGSLLFRD  183 (264)
T ss_pred             hccCCCCcCccceEEEEEE-EeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence            2234788999999999887 66553  12468999999999999999974

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.89  E-value=6.4e-05  Score=75.29  Aligned_cols=91  Identities=19%  Similarity=0.192  Sum_probs=71.3

Q ss_pred             HHcCCCCCCCeEEEEcCCCCHhHHHHHh-cC-CCcEEEEecCCC----------------CCcEEeccCCCCCCCCCcee
Q 010086          109 ISEGYLSQSAKSLCVETQYGQDVFALKE-IG-VEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFD  170 (518)
Q Consensus       109 ~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g-~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD  170 (518)
                      +....+.+|++|||.|+|+|.++..|+. .| .++|+..|+.+.                ......+|..+--+++ .||
T Consensus        87 ~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vD  165 (256)
T COG2519          87 VARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVD  165 (256)
T ss_pred             HHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccC
Confidence            3445689999999999999999988885 34 479999997531                1123457877766666 899


Q ss_pred             EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +|+--      +++|+.++.-+...|||||.+++-+
T Consensus       166 av~LD------mp~PW~~le~~~~~Lkpgg~~~~y~  195 (256)
T COG2519         166 AVFLD------LPDPWNVLEHVSDALKPGGVVVVYS  195 (256)
T ss_pred             EEEEc------CCChHHHHHHHHHHhCCCcEEEEEc
Confidence            99863      4789999999999999999988754

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=97.89  E-value=4.7e-05  Score=75.76  Aligned_cols=87  Identities=16%  Similarity=0.202  Sum_probs=61.5

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHh-c-CCCcEEEEecCCC----------------CCcEEeccCCCC-C-----CCCCcee
Q 010086          115 SQSAKSLCVETQYGQDVFALKE-I-GVEDSIGIFKKSS----------------KPLVISGEGHRI-P-----FDGNTFD  170 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~-~-g~~~v~gID~s~~----------------~~l~~~~da~~L-P-----f~D~SFD  170 (518)
                      .+..+|||||||+|..+..++. . +.++++++|+++.                ...++.+|+.+. +     .++++||
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD  146 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD  146 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence            4577999999999998766664 2 2469999998741                122456776542 2     1257999


Q ss_pred             EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +||....   . +.....+.++.|.|||||++++.
T Consensus       147 ~VfiDa~---k-~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        147 FAFVDAD---K-PNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             EEEECCC---H-HHHHHHHHHHHHhcCCCeEEEEE
Confidence            9998642   1 22346789999999999998874

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.88  E-value=0.00013  Score=76.14  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=77.0

Q ss_pred             HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC------------CC---CcEEe-ccCCCCCCCC
Q 010086          103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS------------SK---PLVIS-GEGHRIPFDG  166 (518)
Q Consensus       103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~------------~~---~l~~~-~da~~LPf~D  166 (518)
                      .+-+-+++..-+++|..+||==||||..+....-.| .+++|.|+..            +.   -.+.. .|+.++||++
T Consensus       184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G-~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~  262 (347)
T COG1041         184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMG-ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRD  262 (347)
T ss_pred             HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcC-ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCC
Confidence            444445566668999999999999999987777677 7999999862            11   11234 4999999999


Q ss_pred             CceeEEEEcCceeec----cCC----hHHHHHHHHhcccCCcEEEEEec
Q 010086          167 NTFDFVFVGGARLEK----ASK----PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       167 ~SFD~V~s~~~~l~~----~~d----p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++||.|.+---+-..    ...    -.++++++++|||+||++++...
T Consensus       263 ~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         263 NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            999999975410111    111    24688999999999999999875

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=97.86  E-value=0.00013  Score=73.35  Aligned_cols=93  Identities=13%  Similarity=0.025  Sum_probs=62.2

Q ss_pred             CCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC------------CCcEEeccCCC-CCC-CCCceeEEEEcCcee--
Q 010086          117 SAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS------------KPLVISGEGHR-IPF-DGNTFDFVFVGGARL--  179 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~------------~~l~~~~da~~-LPf-~D~SFD~V~s~~~~l--  179 (518)
                      ..++||+|||+|..+..+.+. +..+++|+|+++.            ...++++|..+ ++- ..+.||+|+++-=++  
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~  166 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT  166 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence            458999999999999877653 3358999999842            12355677654 221 135799999874111  


Q ss_pred             ---ecc----------------CC----hHHHHHHHHhcccCCcEEEEEecCC
Q 010086          180 ---EKA----------------SK----PLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       180 ---~~~----------------~d----p~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                         ...                .+    ..+++..+.+.|||||++++..+..
T Consensus       167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~  219 (251)
T TIGR03704       167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER  219 (251)
T ss_pred             hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence               110                01    1256677789999999999887644

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.85  E-value=6.2e-05  Score=81.19  Aligned_cols=115  Identities=15%  Similarity=0.181  Sum_probs=75.8

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCC----CCCCCCceeEEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHR----IPFDGNTFDFVFV  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~----LPf~D~SFD~V~s  174 (518)
                      +.++.+|||+|||+|..+..+++.+ ..|+|+|+++.               ...++.+|+.+    +++.+++||+|+.
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~  368 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL  368 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence            4667899999999999998888764 68999999742               12356777654    3456778999997


Q ss_pred             cCceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhcc-CccEEEEeccCCC
Q 010086          175 GGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFN-SCKLVKSRDIDGI  235 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~-~~~~v~~~~v~~~  235 (518)
                      .--   ..--...+++++.+ |+|++++++..... +. ...+..|.+ .|++..+.-+|.|
T Consensus       369 dPP---r~G~~~~~l~~l~~-l~~~~ivyvsc~p~-tl-ard~~~l~~~gy~~~~~~~~DmF  424 (431)
T TIGR00479       369 DPP---RKGCAAEVLRTIIE-LKPERIVYVSCNPA-TL-ARDLEFLCKEGYGITWVQPVDMF  424 (431)
T ss_pred             CcC---CCCCCHHHHHHHHh-cCCCEEEEEcCCHH-HH-HHHHHHHHHCCeeEEEEEEeccC
Confidence            542   11102355666655 89999888764321 11 122333333 4888888887764

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR00417 speE spermidine synthase

Probab=97.84  E-value=7.9e-05  Score=75.58  Aligned_cols=92  Identities=16%  Similarity=0.210  Sum_probs=60.9

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC---------C--------C--cEEeccCCC-CCCCCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS---------K--------P--LVISGEGHR-IPFDGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~---------~--------~--l~~~~da~~-LPf~D~SFD~V~  173 (518)
                      +...+||+||||+|..+..+.+.+ ..+++++|+++.         +        +  .++.+|+.+ +.-.+++||+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            345699999999999887665543 568999998741         0        0  122344322 122257999999


Q ss_pred             EcCceeeccCC----hHHHHHHHHhcccCCcEEEEEec
Q 010086          174 VGGARLEKASK----PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       174 s~~~~l~~~~d----p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +... ....+.    ...+++.+.+.|||||++++...
T Consensus       151 ~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~  187 (270)
T TIGR00417       151 VDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSE  187 (270)
T ss_pred             EeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence            8653 111111    24678999999999999998743

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.83  E-value=0.00014  Score=70.92  Aligned_cols=114  Identities=11%  Similarity=0.057  Sum_probs=69.0

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCC-CCCCCCceeEEEEcCce
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHR-IPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~-LPf~D~SFD~V~s~~~~  178 (518)
                      .++.++||+|||+|.++..+...+..+|+++|.++.               ...++.+|+.+ ++-.+++||+|++.-= 
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP-  130 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP-  130 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC-
Confidence            356799999999999986543345579999998741               12245666654 3333567999999752 


Q ss_pred             eeccCChHHHHHHHHh--cccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCCC
Q 010086          179 LEKASKPLDFASEIVR--TLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSS  238 (518)
Q Consensus       179 l~~~~dp~~~l~Ei~R--VLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~  238 (518)
                      +.. .-...+++-+..  .|+|+|++++...+...     +..+..++++.+.++   |+-+
T Consensus       131 y~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~-----~~~~~~~~~~~~~k~---yG~s  183 (199)
T PRK10909        131 FRK-GLLEETINLLEDNGWLADEALIYVESEVENG-----LPTVPANWQLHREKV---AGQV  183 (199)
T ss_pred             CCC-ChHHHHHHHHHHCCCcCCCcEEEEEecCCCC-----cccCCCccEEEEEec---CCCE
Confidence            221 112233343333  47899999988654322     212234566666666   6644

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.83  E-value=5e-05  Score=75.43  Aligned_cols=85  Identities=15%  Similarity=0.258  Sum_probs=65.0

Q ss_pred             CeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCC---CCCCCceeEEEEcCce
Q 010086          118 AKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRI---PFDGNTFDFVFVGGAR  178 (518)
Q Consensus       118 ~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~L---Pf~D~SFD~V~s~~~~  178 (518)
                      ..+|+||||.|..+..+++. .-.+.+||++...               ...++++|+..+   -++++|.|-|+..+  
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F--  127 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF--  127 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC--
Confidence            47999999999999888764 3468999998631               112457777665   25677999999865  


Q ss_pred             eeccCCh-------------HHHHHHHHhcccCCcEEEEEecC
Q 010086          179 LEKASKP-------------LDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       179 l~~~~dp-------------~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                          +||             ..+++++.|+|||||.+.+.+..
T Consensus       128 ----PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~  166 (227)
T COG0220         128 ----PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN  166 (227)
T ss_pred             ----CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence                333             25899999999999999998854

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.82  E-value=0.0001  Score=62.11  Aligned_cols=87  Identities=22%  Similarity=0.313  Sum_probs=61.3

Q ss_pred             EEEEcCCCCHhHHHHHhcCC--CcEEEEecCCC-----------C----CcEEeccCCC--CCCCC-CceeEEEEcCcee
Q 010086          120 SLCVETQYGQDVFALKEIGV--EDSIGIFKKSS-----------K----PLVISGEGHR--IPFDG-NTFDFVFVGGARL  179 (518)
Q Consensus       120 vLDVGcGtG~~~~~L~~~g~--~~v~gID~s~~-----------~----~l~~~~da~~--LPf~D-~SFD~V~s~~~~l  179 (518)
                      ++|+|||+|... .+.....  ..++|+|.++.           .    .....++...  +||.+ ..||++ +....+
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~  129 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL  129 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence            999999999965 2332221  37899998731           1    1244566665  89988 599999 544324


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      ++.. +...+.++.|+|||+|.+++.....
T Consensus       130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~  158 (257)
T COG0500         130 HLLP-PAKALRELLRVLKPGGRLVLSDLLR  158 (257)
T ss_pred             hcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence            4443 7889999999999999998876543

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.82  E-value=0.00022  Score=70.62  Aligned_cols=94  Identities=16%  Similarity=0.070  Sum_probs=68.2

Q ss_pred             HHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCC--------CCCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          108 LISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKS--------SKPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~--------~~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      +.....+++..++||||+|+|..+.++.+. +-.+++..|+-.        ....++.+|.. -|+|.  +|+++..+. 
T Consensus        92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~v-  167 (241)
T PF00891_consen   92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHV-  167 (241)
T ss_dssp             HHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESS-
T ss_pred             hhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hhhcc--ccceeeehh-
Confidence            334445666789999999999999877663 345888999621        11234567776 57777  999999998 


Q ss_pred             eeccCChH--HHHHHHHhcccCC--cEEEEE
Q 010086          179 LEKASKPL--DFASEIVRTLKPE--GFAVVH  205 (518)
Q Consensus       179 l~~~~dp~--~~l~Ei~RVLKPG--G~lvi~  205 (518)
                      ||++++..  +.++.+++.|+||  |+++|.
T Consensus       168 Lh~~~d~~~~~iL~~~~~al~pg~~g~llI~  198 (241)
T PF00891_consen  168 LHDWSDEDCVKILRNAAAALKPGKDGRLLII  198 (241)
T ss_dssp             GGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred             hhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence            99987654  5789999999999  998775

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.81  E-value=9e-05  Score=73.68  Aligned_cols=82  Identities=17%  Similarity=0.077  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------CCcE---EeccCCCC-----CCCCCceeEEEEcCce
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------KPLV---ISGEGHRI-----PFDGNTFDFVFVGGAR  178 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------~~l~---~~~da~~L-----Pf~D~SFD~V~s~~~~  178 (518)
                      .++.++||+|||||.++..+.+.|...|+|+|+++.        .+.+   ...+.+.+     +..-..+|++|++.. 
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~-  152 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI-  152 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH-
Confidence            467799999999999999998888789999999751        1111   12233332     222247888777643 


Q ss_pred             eeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          179 LEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                              ..+.-+.+.|+| |.+++.+
T Consensus       153 --------~~l~~i~~~l~~-~~~~~L~  171 (228)
T TIGR00478       153 --------SILPELDLLLNP-NDLTLLF  171 (228)
T ss_pred             --------hHHHHHHHHhCc-CeEEEEc
Confidence                    247789999999 8887776

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK01581 speE spermidine synthase; Validated

Probab=97.81  E-value=8.9e-05  Score=78.26  Aligned_cols=91  Identities=12%  Similarity=0.090  Sum_probs=63.7

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC--------C------------C--cEEeccCCC-CCCCCCcee
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS--------K------------P--LVISGEGHR-IPFDGNTFD  170 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~--------~------------~--l~~~~da~~-LPf~D~SFD  170 (518)
                      ....+||+||||+|..+..+.+. +..+++.||+++.        +            +  .++.+|+.+ ++-.++.||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            44569999999999987666554 3579999998741        1            1  123566655 344567899


Q ss_pred             EEEEcCceeeccCC------hHHHHHHHHhcccCCcEEEEEec
Q 010086          171 FVFVGGARLEKASK------PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       171 ~V~s~~~~l~~~~d------p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +|++..  .+....      -..+++.+.|.|||||+++++..
T Consensus       229 VIIvDl--~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        229 VIIIDF--PDPATELLSTLYTSELFARIATFLTEDGAFVCQSN  269 (374)
T ss_pred             EEEEcC--CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            999864  221111      14588999999999999988753

>PRK03612 spermidine synthase; Provisional

Probab=97.79  E-value=4.9e-05  Score=84.14  Aligned_cols=92  Identities=17%  Similarity=0.260  Sum_probs=65.4

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC--------------------CC--cEEeccCCC-CCCCCCcee
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS--------------------KP--LVISGEGHR-IPFDGNTFD  170 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~--------------------~~--l~~~~da~~-LPf~D~SFD  170 (518)
                      ++..+|||||||+|..+..+.+.+ ..+++++|+++.                    .+  .++.+|+.+ +.-.+++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            456799999999999987776654 379999998631                    01  234667665 333457999


Q ss_pred             EEEEcCceeeccCC-----hHHHHHHHHhcccCCcEEEEEec
Q 010086          171 FVFVGGARLEKASK-----PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       171 ~V~s~~~~l~~~~d-----p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +|++... ..+.+.     ..++++++.|.|||||+++++..
T Consensus       376 vIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~  416 (521)
T PRK03612        376 VIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST  416 (521)
T ss_pred             EEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence            9999753 222111     13578999999999999999764

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.77  E-value=2.8e-05  Score=73.60  Aligned_cols=117  Identities=20%  Similarity=0.169  Sum_probs=65.4

Q ss_pred             CCCCCC--CeEEEEcCCCCHhHHHHHhcC--CCcEEEEecCCCCC--c--EEeccCC------CCC--CC--CCceeEEE
Q 010086          112 GYLSQS--AKSLCVETQYGQDVFALKEIG--VEDSIGIFKKSSKP--L--VISGEGH------RIP--FD--GNTFDFVF  173 (518)
Q Consensus       112 gll~~~--~rvLDVGcGtG~~~~~L~~~g--~~~v~gID~s~~~~--l--~~~~da~------~LP--f~--D~SFD~V~  173 (518)
                      ++++++  .++||+||++|..++.+.+.+  ...|+|+|+.+..+  .  .+++|..      .+.  ++  .+.||+|+
T Consensus        17 ~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~   96 (181)
T PF01728_consen   17 KIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVL   96 (181)
T ss_dssp             SSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred             CCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceec
Confidence            345554  899999999999998888766  57999999976411  1  1223221      111  11  27999999


Q ss_pred             EcCceeecc----CChH-------HHHHHHHhcccCCcEEEEEecCCCccCchhHhhh-ccCccEEEEec
Q 010086          174 VGGARLEKA----SKPL-------DFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDL-FNSCKLVKSRD  231 (518)
Q Consensus       174 s~~~~l~~~----~dp~-------~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~l-f~~~~~v~~~~  231 (518)
                      |-.+ ..-.    .+..       ..+.-+...|||||.+++-+-.....  +.+... -+.|+.|++.+
T Consensus        97 ~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~--~~~~~~l~~~F~~v~~~K  163 (181)
T PF01728_consen   97 SDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI--EELIYLLKRCFSKVKIVK  163 (181)
T ss_dssp             E--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS--HHHHHHHHHHHHHEEEEE
T ss_pred             cccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH--HHHHHHHHhCCeEEEEEE
Confidence            9763 2111    1111       23445567899999988876443322  233322 23444455544

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.73  E-value=7.6e-05  Score=72.56  Aligned_cols=90  Identities=16%  Similarity=0.143  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCCCCHhHHHH----Hh-----cC-CCcEEEEecCCC------------------C----------------
Q 010086          116 QSAKSLCVETQYGQDVFAL----KE-----IG-VEDSIGIFKKSS------------------K----------------  151 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L----~~-----~g-~~~v~gID~s~~------------------~----------------  151 (518)
                      +.-||++.||+||..+..|    .+     .+ ..+++|.|+++.                  +                
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            4469999999999876433    33     11 138999999730                  0                


Q ss_pred             ---------CcEEeccCCCCCCCCCceeEEEEcCceeeccCCh--HHHHHHHHhcccCCcEEEEEe
Q 010086          152 ---------PLVISGEGHRIPFDGNTFDFVFVGGARLEKASKP--LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       152 ---------~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                               ..+.+.|..+.+-+.+.||+|+|.++ |-++..+  .++++-+++.|+|||++++.-
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNV-lIYF~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNV-LIYFDPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SS-GGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCE-EEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence                     00124455444456789999999998 7777654  468999999999999999954

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.72  E-value=5.3e-05  Score=86.71  Aligned_cols=93  Identities=12%  Similarity=0.162  Sum_probs=64.7

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------------CCcEEeccCCCC-CCCCCceeEEEEcC
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------------KPLVISGEGHRI-PFDGNTFDFVFVGG  176 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------------~~l~~~~da~~L-Pf~D~SFD~V~s~~  176 (518)
                      .++.+|||+|||+|.++..++..|..+|+++|+|+.                 ...++++|+.+. .-..++||+|++.-
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP  616 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP  616 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence            357899999999999998888777667999999841                 123456775432 11157899999853


Q ss_pred             ceeec----------cCChHHHHHHHHhcccCCcEEEEEec
Q 010086          177 ARLEK----------ASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       177 ~~l~~----------~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      =+|..          ..+-...+..+.+.|||||++++...
T Consensus       617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~  657 (702)
T PRK11783        617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN  657 (702)
T ss_pred             CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            11211          11223567888999999999988654

>PLN02366 spermidine synthase

Probab=97.71  E-value=0.00012  Score=76.03  Aligned_cols=93  Identities=17%  Similarity=0.178  Sum_probs=63.8

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------C----------CcEEeccCCCC--CCCCCceeE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------K----------PLVISGEGHRI--PFDGNTFDF  171 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------~----------~l~~~~da~~L--Pf~D~SFD~  171 (518)
                      .+...+||+||||.|..+..+.+. +..+++.+|+++.         +          ..++.+|+...  ..+++.||+
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence            355689999999999999887765 3568899998631         1          11345675332  124678999


Q ss_pred             EEEcCceeeccCC----hHHHHHHHHhcccCCcEEEEEec
Q 010086          172 VFVGGARLEKASK----PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       172 V~s~~~~l~~~~d----p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      |++... -.+.+.    -..+++.+.|.|+|||+++.+..
T Consensus       169 Ii~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~  207 (308)
T PLN02366        169 IIVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQAE  207 (308)
T ss_pred             EEEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence            998652 211111    13578999999999999988653

>PHA03412 putative methyltransferase; Provisional

Probab=97.68  E-value=0.0001  Score=73.62  Aligned_cols=85  Identities=11%  Similarity=0.103  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc----CCCcEEEEecCCC----------CCcEEeccCCCCCCCCCceeEEEEcCcee--
Q 010086          116 QSAKSLCVETQYGQDVFALKEI----GVEDSIGIFKKSS----------KPLVISGEGHRIPFDGNTFDFVFVGGARL--  179 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~----g~~~v~gID~s~~----------~~l~~~~da~~LPf~D~SFD~V~s~~~~l--  179 (518)
                      .+.+|||+|||+|.++..+.+.    +..+++++|+++.          ...++.+|....++ +++||+|+++-=++  
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~  127 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI  127 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence            3679999999999999777652    2358999999742          12356788876665 67999999975211  


Q ss_pred             --ecc-------CChHHHHHHHHhcccCCcE
Q 010086          180 --EKA-------SKPLDFASEIVRTLKPEGF  201 (518)
Q Consensus       180 --~~~-------~dp~~~l~Ei~RVLKPGG~  201 (518)
                        .+.       .....+++.+.|.++||+.
T Consensus       128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             cccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence              010       1134578889997777775

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.68  E-value=7.9e-05  Score=76.50  Aligned_cols=88  Identities=14%  Similarity=0.164  Sum_probs=62.6

Q ss_pred             CeEEEEcCCCCHhHHHH----Hhc-C----CCcEEEEecCC----------CC------------------------Cc-
Q 010086          118 AKSLCVETQYGQDVFAL----KEI-G----VEDSIGIFKKS----------SK------------------------PL-  153 (518)
Q Consensus       118 ~rvLDVGcGtG~~~~~L----~~~-g----~~~v~gID~s~----------~~------------------------~l-  153 (518)
                      -||++.||+||..+..+    .+. +    ..+++|+|++.          ++                        .. 
T Consensus       117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~  196 (287)
T PRK10611        117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV  196 (287)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence            69999999999876433    332 1    13799999972          00                        00 


Q ss_pred             -----------EEeccCCCCCCC-CCceeEEEEcCceeeccCC--hHHHHHHHHhcccCCcEEEEEe
Q 010086          154 -----------VISGEGHRIPFD-GNTFDFVFVGGARLEKASK--PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       154 -----------~~~~da~~LPf~-D~SFD~V~s~~~~l~~~~d--p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                                 +.+.|..+-|++ .+.||+|+|.++ |.|+..  ..++++.+++.|||||++++.-
T Consensus       197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNv-liyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNV-MIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhH-HhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence                       123455444554 688999999998 888754  4578999999999999887743

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.64  E-value=0.00021  Score=69.72  Aligned_cols=90  Identities=18%  Similarity=0.204  Sum_probs=54.9

Q ss_pred             CCCC-eEEEEcCCCCHhHHHHHhc-CCCcEEEEecCC------------------CCCcEEeccCCCC------CCCCCc
Q 010086          115 SQSA-KSLCVETQYGQDVFALKEI-GVEDSIGIFKKS------------------SKPLVISGEGHRI------PFDGNT  168 (518)
Q Consensus       115 ~~~~-rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~------------------~~~l~~~~da~~L------Pf~D~S  168 (518)
                      ++.. +||+||+|||+-+..+++. ....-.--|..+                  .+|+.+......-      ++..++
T Consensus        23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~  102 (204)
T PF06080_consen   23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES  102 (204)
T ss_pred             CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence            4444 5999999999998777652 211111112111                  0122221111111      234679


Q ss_pred             eeEEEEcCceeeccCCh--HHHHHHHHhcccCCcEEEEE
Q 010086          169 FDFVFVGGARLEKASKP--LDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ||+|+|.+. +|-++-.  +.+++++.++|||||.+++-
T Consensus       103 ~D~i~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y  140 (204)
T PF06080_consen  103 FDAIFCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLY  140 (204)
T ss_pred             cceeeehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence            999999996 6555432  36789999999999998874

The function of this family is unknown.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.63  E-value=0.00011  Score=73.88  Aligned_cols=90  Identities=21%  Similarity=0.225  Sum_probs=62.7

Q ss_pred             cCCCCCCCeEEEEcCCCCHhHHHHHh-cC-CCcEEEEecCCC--------------C--CcEEeccCCCCCCC---CCce
Q 010086          111 EGYLSQSAKSLCVETQYGQDVFALKE-IG-VEDSIGIFKKSS--------------K--PLVISGEGHRIPFD---GNTF  169 (518)
Q Consensus       111 ~gll~~~~rvLDVGcGtG~~~~~L~~-~g-~~~v~gID~s~~--------------~--~l~~~~da~~LPf~---D~SF  169 (518)
                      ..-++||++||+.|+|+|.++.+|.+ .| .++|+..|..+.              .  ..+...|..+--|+   ++.|
T Consensus        35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~  114 (247)
T PF08704_consen   35 RLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDF  114 (247)
T ss_dssp             HTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSE
T ss_pred             HcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcc
Confidence            34579999999999999999988886 33 469999998631              1  12346676554453   3689


Q ss_pred             eEEEEcCceeeccCChHHHHHHHHhcc-cCCcEEEEEe
Q 010086          170 DFVFVGGARLEKASKPLDFASEIVRTL-KPEGFAVVHV  206 (518)
Q Consensus       170 D~V~s~~~~l~~~~dp~~~l~Ei~RVL-KPGG~lvi~~  206 (518)
                      |.||--      +++|+.++..+.++| ||||++++-+
T Consensus       115 DavfLD------lp~Pw~~i~~~~~~L~~~gG~i~~fs  146 (247)
T PF08704_consen  115 DAVFLD------LPDPWEAIPHAKRALKKPGGRICCFS  146 (247)
T ss_dssp             EEEEEE------SSSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred             cEEEEe------CCCHHHHHHHHHHHHhcCCceEEEEC
Confidence            998863      478999999999999 9999988765

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.62  E-value=0.00079  Score=65.82  Aligned_cols=120  Identities=16%  Similarity=0.119  Sum_probs=77.6

Q ss_pred             CCCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCCCC----cEEeccCCCCC--------CCCCceeEEEEcCc
Q 010086          112 GYLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSSKP----LVISGEGHRIP--------FDGNTFDFVFVGGA  177 (518)
Q Consensus       112 gll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~~~----l~~~~da~~LP--------f~D~SFD~V~s~~~  177 (518)
                      ++++++.+|+|+|+-+|..++.+++. + ...|+|+|+.+..+    ..+++|.+.=+        ++...+|+|+|-.+
T Consensus        41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~a  120 (205)
T COG0293          41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMA  120 (205)
T ss_pred             CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCC
Confidence            57899999999999999999877763 3 13599999976432    24566554322        44556899998664


Q ss_pred             e----e---eccC--Ch-HHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhcc-CccEEEEeccC
Q 010086          178 R----L---EKAS--KP-LDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFN-SCKLVKSRDID  233 (518)
Q Consensus       178 ~----l---~~~~--dp-~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~-~~~~v~~~~v~  233 (518)
                      .    .   +|.-  .. ..++.-+.++|+|||.+++-+-+++.+  +.++..++ .|+.|...++.
T Consensus       121 p~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~--~~~l~~~~~~F~~v~~~KP~  185 (205)
T COG0293         121 PNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF--EDLLKALRRLFRKVKIFKPK  185 (205)
T ss_pred             CCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH--HHHHHHHHHhhceeEEecCc
Confidence            0    1   2211  01 134455667999999999875444432  34444443 56777777753

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.58  E-value=0.00021  Score=71.98  Aligned_cols=67  Identities=12%  Similarity=0.102  Sum_probs=51.4

Q ss_pred             HHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCCCceeEEEE
Q 010086          108 LISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGNTFDFVFV  174 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~SFD~V~s  174 (518)
                      +++..-+.++.+|||||||+|..+..+.+.+ .+++|+|+++.             ...++.+|+.++++++  ||.|++
T Consensus        21 iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~--~d~Vv~   97 (258)
T PRK14896         21 IVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPE--FNKVVS   97 (258)
T ss_pred             HHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchh--ceEEEE
Confidence            3333335678999999999999999888875 68999999741             1235688999888764  899999


Q ss_pred             cCc
Q 010086          175 GGA  177 (518)
Q Consensus       175 ~~~  177 (518)
                      +.-
T Consensus        98 NlP  100 (258)
T PRK14896         98 NLP  100 (258)
T ss_pred             cCC
Confidence            763

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=0.00029  Score=72.11  Aligned_cols=99  Identities=21%  Similarity=0.324  Sum_probs=65.4

Q ss_pred             eEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCCC-----------C----cEEeccCCCCCCCCCceeEEEEcCceeecc
Q 010086          119 KSLCVETQYGQDVFALKEIG-VEDSIGIFKKSSK-----------P----LVISGEGHRIPFDGNTFDFVFVGGARLEKA  182 (518)
Q Consensus       119 rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~~-----------~----l~~~~da~~LPf~D~SFD~V~s~~~~l~~~  182 (518)
                      +|||+|||+|..+.+++... ..+|+|+|+|+..           .    ..+++|.- -+... .||+|+|+-=++..-
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf-~~~~~-~fDlIVsNPPYip~~  190 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLF-EPLRG-KFDLIVSNPPYIPAE  190 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecc-cccCC-ceeEEEeCCCCCCCc
Confidence            79999999999999888754 3599999998521           1    12233211 12333 899999975223221


Q ss_pred             ----------CCh--------------HHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhcc
Q 010086          183 ----------SKP--------------LDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFN  222 (518)
Q Consensus       183 ----------~dp--------------~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~  222 (518)
                                -+|              .+++.++.+.|+|||.+++..+.+..   ..+.++|.
T Consensus       191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~---~~v~~~~~  251 (280)
T COG2890         191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQG---EAVKALFE  251 (280)
T ss_pred             ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcH---HHHHHHHH
Confidence                      122              24678899999999999999875443   34555543

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.55  E-value=0.00025  Score=70.66  Aligned_cols=91  Identities=16%  Similarity=0.231  Sum_probs=64.2

Q ss_pred             CCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC-------------------C------------------------
Q 010086          116 QSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS-------------------K------------------------  151 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~-------------------~------------------------  151 (518)
                      .+..+|||||.+|.++..+++ .|...+.|+|+.+.                   .                        
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            356899999999999988876 57778999998620                   0                        


Q ss_pred             ----Cc--------EEeccCCCCCCCCCceeEEEEcCc----eeeccCC-hHHHHHHHHhcccCCcEEEEEe
Q 010086          152 ----PL--------VISGEGHRIPFDGNTFDFVFVGGA----RLEKASK-PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       152 ----~l--------~~~~da~~LPf~D~SFD~V~s~~~----~l~~~~d-p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                          +.        .+.....-|.+.+..||+|+|...    +|.|=++ ..++++-|.|.|.|||++++.-
T Consensus       138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP  209 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP  209 (288)
T ss_pred             cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence                00        011122223466789999999874    2333222 3478999999999999999964

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.51  E-value=0.00062  Score=69.32  Aligned_cols=115  Identities=17%  Similarity=0.195  Sum_probs=79.7

Q ss_pred             hccCChhHHHHHhhHHHHHHHHHHcCC----CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC-------------
Q 010086           87 DMYTSKEWIKAVNFYSSVFQDLISEGY----LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS-------------  149 (518)
Q Consensus        87 ~~w~s~~wr~~v~~~~~l~~~L~~~gl----l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~-------------  149 (518)
                      +=|.+..=...-..+..++..|.+.-.    -+...+||.=|||.|+++..++..|+ .+.|.+.|-             
T Consensus        23 RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~  101 (270)
T PF07942_consen   23 RDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHC  101 (270)
T ss_pred             hhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHccc
Confidence            445543222233466667666655422    13356999999999999999999984 899999761             


Q ss_pred             ----------C-------------------C---C----------cEEeccCCCCCCCC---CceeEEEEcCceeeccCC
Q 010086          150 ----------S-------------------K---P----------LVISGEGHRIPFDG---NTFDFVFVGGARLEKASK  184 (518)
Q Consensus       150 ----------~-------------------~---~----------l~~~~da~~LPf~D---~SFD~V~s~~~~l~~~~d  184 (518)
                                +                   |   +          ....||..++.-++   ++||+|++.+- ++-..|
T Consensus       102 ~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FF-IDTA~N  180 (270)
T PF07942_consen  102 SQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFF-IDTAEN  180 (270)
T ss_pred             CCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEE-eechHH
Confidence                      0                   1   0          01256777765555   79999998774 666667


Q ss_pred             hHHHHHHHHhcccCCcEEE
Q 010086          185 PLDFASEIVRTLKPEGFAV  203 (518)
Q Consensus       185 p~~~l~Ei~RVLKPGG~lv  203 (518)
                      .-..+..|+++|||||+.+
T Consensus       181 i~~Yi~tI~~lLkpgG~WI  199 (270)
T PF07942_consen  181 IIEYIETIEHLLKPGGYWI  199 (270)
T ss_pred             HHHHHHHHHHHhccCCEEE
Confidence            7889999999999999543

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.50  E-value=0.00015  Score=75.46  Aligned_cols=88  Identities=18%  Similarity=0.077  Sum_probs=63.9

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCc-
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGA-  177 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~-  177 (518)
                      +-.+..|||||||||.++..-++.|..+|+|+|.|.-               -..+++|.++++-+|-+.+|.|+|-.. 
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG  137 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG  137 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence            3467899999999999998888889889999998731               122457888877777899999998652 


Q ss_pred             e--e-eccCChHHHHHHHHhcccCCcEEE
Q 010086          178 R--L-EKASKPLDFASEIVRTLKPEGFAV  203 (518)
Q Consensus       178 ~--l-~~~~dp~~~l~Ei~RVLKPGG~lv  203 (518)
                      +  | +.+  ...++-.=.|-|+|||.++
T Consensus       138 y~Ll~EsM--ldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  138 YFLLYESM--LDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             HHHHHhhh--hhhhhhhhhhccCCCceEc
Confidence            0  1 111  2234444568999999753

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.48  E-value=0.00028  Score=71.64  Aligned_cols=68  Identities=10%  Similarity=0.038  Sum_probs=51.4

Q ss_pred             HHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086          108 LISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------KPLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      +++...+.++.+|||||||+|..+..+.+.+ .+++|+|+++.            ...++.+|+.++++++-.+|.|+++
T Consensus        34 i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N  112 (272)
T PRK00274         34 IVDAAGPQPGDNVLEIGPGLGALTEPLLERA-AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN  112 (272)
T ss_pred             HHHhcCCCCcCeEEEeCCCccHHHHHHHHhC-CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence            3333345678899999999999999888876 59999999852            1235688999988876446888776


Q ss_pred             C
Q 010086          176 G  176 (518)
Q Consensus       176 ~  176 (518)
                      -
T Consensus       113 l  113 (272)
T PRK00274        113 L  113 (272)
T ss_pred             C
Confidence            4

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.46  E-value=0.00085  Score=71.33  Aligned_cols=115  Identities=9%  Similarity=0.027  Sum_probs=75.5

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCC-CCCCceeEEEEcCcee
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIP-FDGNTFDFVFVGGARL  179 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LP-f~D~SFD~V~s~~~~l  179 (518)
                      ++.++||++||+|.++..++..+ ..|+|||+++.               ...++.+|+.+.. -..+.||+|+..-- -
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP-r  310 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP-R  310 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC-C
Confidence            45799999999999998888766 78999998742               1124567765432 11246999988542 1


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCCC
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSS  238 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~  238 (518)
                      ..+  ..++++.+. -++|++++++.....  .-...+..| ..|++..+.-+|.|=.+
T Consensus       311 ~G~--~~~~l~~l~-~~~p~~ivyvsc~p~--TlaRDl~~L-~gy~l~~~~~~DmFPqT  363 (374)
T TIGR02085       311 RGI--GKELCDYLS-QMAPKFILYSSCNAQ--TMAKDIAEL-SGYQIERVQLFDMFPHT  363 (374)
T ss_pred             CCC--cHHHHHHHH-hcCCCeEEEEEeCHH--HHHHHHHHh-cCceEEEEEEeccCCCC
Confidence            111  124455554 489999998876422  112344444 78999999998886543

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.44  E-value=0.00081  Score=67.42  Aligned_cols=69  Identities=14%  Similarity=0.151  Sum_probs=51.0

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCCCcee-
Q 010086          105 FQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGNTFD-  170 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~SFD-  170 (518)
                      .+.+++...+.++.+|||||||+|..+..|.+.+ ..++++|+++.             ...++.+|+.++|++  +|| 
T Consensus        18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~   94 (253)
T TIGR00755        18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPK   94 (253)
T ss_pred             HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCC
Confidence            3344444445678899999999999999998876 57999998741             113467899998886  566 


Q ss_pred             --EEEEcC
Q 010086          171 --FVFVGG  176 (518)
Q Consensus       171 --~V~s~~  176 (518)
                        .|+++.
T Consensus        95 ~~~vvsNl  102 (253)
T TIGR00755        95 QLKVVSNL  102 (253)
T ss_pred             cceEEEcC
Confidence              777654

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.42  E-value=0.00026  Score=78.21  Aligned_cols=93  Identities=14%  Similarity=0.052  Sum_probs=65.4

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-------------C-C-cEEeccCCCC--CCCCCceeEEEEcCc
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-------------K-P-LVISGEGHRI--PFDGNTFDFVFVGGA  177 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-------------~-~-l~~~~da~~L--Pf~D~SFD~V~s~~~  177 (518)
                      .+..+||||||.|..+..++.. .-..++|||+...             . . .++.++++.+  -|+++++|.|+..+-
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            4568999999999999888764 3468999998631             0 1 1234555433  378999999998652


Q ss_pred             eeeccC-----C---hHHHHHHHHhcccCCcEEEEEecCC
Q 010086          178 RLEKAS-----K---PLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       178 ~l~~~~-----d---p~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                       =-|..     .   -..++++++|+|||||.+.+.+...
T Consensus       427 -DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~  465 (506)
T PRK01544        427 -DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE  465 (506)
T ss_pred             -CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence             11110     0   1258999999999999999987543

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.41  E-value=0.00014  Score=78.81  Aligned_cols=110  Identities=18%  Similarity=0.289  Sum_probs=75.2

Q ss_pred             ChhHHHHHhhHHHHHHHHHHcCCCCCC--CeEEEEcCCCCHhHHHHHhcCC--CcEEEEecCCCCCcE--------Eecc
Q 010086           91 SKEWIKAVNFYSSVFQDLISEGYLSQS--AKSLCVETQYGQDVFALKEIGV--EDSIGIFKKSSKPLV--------ISGE  158 (518)
Q Consensus        91 s~~wr~~v~~~~~l~~~L~~~gll~~~--~rvLDVGcGtG~~~~~L~~~g~--~~v~gID~s~~~~l~--------~~~d  158 (518)
                      +..|++.+..|-.++.-.     +..+  ..|+|+.+|.|.++.+|.+.++  .+|+-++-.+..+.+        ...=
T Consensus       343 t~~Wk~~V~~Y~~l~~~~-----i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDW  417 (506)
T PF03141_consen  343 TKHWKKRVSHYKKLLGLA-----IKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDW  417 (506)
T ss_pred             HHHHHHHHHHHHHhhccc-----ccccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccch
Confidence            477888888777665422     2333  3699999999999999987662  223222211111111        1234


Q ss_pred             CCCCCCCCCceeEEEEcCceeeccCC---hHHHHHHHHhcccCCcEEEEEe
Q 010086          159 GHRIPFDGNTFDFVFVGGARLEKASK---PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       159 a~~LPf~D~SFD~V~s~~~~l~~~~d---p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .+.+|+-+.++|++-+.+. |.+..+   ....+-||.|+|||||.++|.-
T Consensus       418 CE~fsTYPRTYDLlHA~~l-fs~~~~rC~~~~illEmDRILRP~G~~iiRD  467 (506)
T PF03141_consen  418 CEAFSTYPRTYDLLHADGL-FSLYKDRCEMEDILLEMDRILRPGGWVIIRD  467 (506)
T ss_pred             hhccCCCCcchhheehhhh-hhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence            5667778999999999886 666543   4578899999999999999953

; GO: 0008168 methyltransferase activity

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.39  E-value=4.8e-05  Score=70.89  Aligned_cols=80  Identities=16%  Similarity=0.125  Sum_probs=56.0

Q ss_pred             eEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCCCcEEeccC-CCCCCCCCceeEEEEcCceeeccCChH--HHHHHHHhc
Q 010086          119 KSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEG-HRIPFDGNTFDFVFVGGARLEKASKPL--DFASEIVRT  195 (518)
Q Consensus       119 rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~~l~~~~da-~~LPf~D~SFD~V~s~~~~l~~~~dp~--~~l~Ei~RV  195 (518)
                      -.+-||||.=...     .|   -+-+|+...+.+-...++ ...+|.|+|.|+|++.++ ++|+...+  .+++|++|+
T Consensus         5 ~kv~ig~G~~r~n-----pg---Wi~~d~ed~~~vdlvc~As~e~~F~dns~d~iyaeHv-lEHlt~~Eg~~alkechr~   75 (185)
T COG4627           5 EKVKIGAGGKRVN-----PG---WIITDVEDRPEVDLVCRASNESMFEDNSVDAIYAEHV-LEHLTYDEGTSALKECHRF   75 (185)
T ss_pred             eEEEEeccccccC-----CC---ceeeehhcccccchhhhhhhhccCCCcchHHHHHHHH-HHHHhHHHHHHHHHHHHHH
Confidence            3578999963321     12   234554433322223333 456999999999999998 99987543  688999999


Q ss_pred             ccCCcEEEEEec
Q 010086          196 LKPEGFAVVHVR  207 (518)
Q Consensus       196 LKPGG~lvi~~~  207 (518)
                      |||||++-+++.
T Consensus        76 Lrp~G~LriAvP   87 (185)
T COG4627          76 LRPGGKLRIAVP   87 (185)
T ss_pred             hCcCcEEEEEcC
Confidence            999999999875

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.00088  Score=65.52  Aligned_cols=101  Identities=21%  Similarity=0.294  Sum_probs=72.9

Q ss_pred             hhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cC--CCcEEEEecCC-------------------------C
Q 010086           99 NFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKE-IG--VEDSIGIFKKS-------------------------S  150 (518)
Q Consensus        99 ~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g--~~~v~gID~s~-------------------------~  150 (518)
                      ..+..+|+.|..  .|+||.+.||||.|+|.++..+.. .|  ...+.|||..+                         .
T Consensus        67 ~mha~~le~L~~--~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~  144 (237)
T KOG1661|consen   67 HMHATALEYLDD--HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG  144 (237)
T ss_pred             HHHHHHHHHHHH--hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence            345566665543  368999999999999999876664 22  24558988531                         0


Q ss_pred             CCcEEeccCCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          151 KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       151 ~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      ...++.||....-=+.+.||.|.+..+ -      .+.-+++.-.|||||.+++.+..
T Consensus       145 ~l~ivvGDgr~g~~e~a~YDaIhvGAa-a------~~~pq~l~dqL~~gGrllip~~~  195 (237)
T KOG1661|consen  145 ELSIVVGDGRKGYAEQAPYDAIHVGAA-A------SELPQELLDQLKPGGRLLIPVGQ  195 (237)
T ss_pred             ceEEEeCCccccCCccCCcceEEEccC-c------cccHHHHHHhhccCCeEEEeecc
Confidence            123567888887667889999999764 2      23457788999999999998764

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=97.30  E-value=0.00058  Score=73.23  Aligned_cols=92  Identities=11%  Similarity=0.192  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C---CcEEeccCCCCC--C--CCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K---PLVISGEGHRIP--F--DGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~---~l~~~~da~~LP--f--~D~SFD~V~  173 (518)
                      .++.+|||+|||+|.++......|..+|+++|+++.              .   ..++++|+.+..  +  .+++||+|+
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi  298 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence            467899999999999876555456569999999841              1   124567765531  2  356899999


Q ss_pred             EcCceeeccC--------ChHHHHHHHHhcccCCcEEEEEe
Q 010086          174 VGGARLEKAS--------KPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       174 s~~~~l~~~~--------dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +.-=+|..-.        +-...+..+.+.|||||+++...
T Consensus       299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s  339 (396)
T PRK15128        299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS  339 (396)
T ss_pred             ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            8742121100        01123445789999999988754

>PLN02672 methionine S-methyltransferase

Probab=97.23  E-value=0.0012  Score=78.41  Aligned_cols=94  Identities=10%  Similarity=0.005  Sum_probs=64.2

Q ss_pred             CCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC-------------------------------CCcEEeccCCCCCC
Q 010086          117 SAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS-------------------------------KPLVISGEGHRIPF  164 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~-------------------------------~~l~~~~da~~LPf  164 (518)
                      +.+|||+|||+|..+..+++.. ...++|+|+|+.                               ...++++|..+ ++
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~-~~  197 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLG-YC  197 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhh-hc
Confidence            4689999999999998887643 368999999841                               01234566543 23


Q ss_pred             CC--CceeEEEEcCceeec-----c----------------------------CCh----HHHHHHHHhcccCCcEEEEE
Q 010086          165 DG--NTFDFVFVGGARLEK-----A----------------------------SKP----LDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       165 ~D--~SFD~V~s~~~~l~~-----~----------------------------~dp----~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .+  ..||+|+|+-=++..     +                            .|.    .+.+.++.++|||||.+++.
T Consensus       198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE  277 (1082)
T PLN02672        198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN  277 (1082)
T ss_pred             cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            33  369999997521211     0                            000    35678899999999999999


Q ss_pred             ecCCCc
Q 010086          206 VRAKDE  211 (518)
Q Consensus       206 ~~~~~~  211 (518)
                      ++....
T Consensus       278 iG~~q~  283 (1082)
T PLN02672        278 MGGRPG  283 (1082)
T ss_pred             ECccHH
Confidence            875543

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.22  E-value=0.0056  Score=62.40  Aligned_cols=117  Identities=11%  Similarity=0.055  Sum_probs=72.3

Q ss_pred             hhhccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHH----HhcC------CCcEEEEecCC-----
Q 010086           85 RRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFAL----KEIG------VEDSIGIFKKS-----  149 (518)
Q Consensus        85 ~~~~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L----~~~g------~~~v~gID~s~-----  149 (518)
                      ..-+|++..|..-   -..++..|+....- ..-+|+..||+||.....+    .+.+      ...++|.|++.     
T Consensus        69 T~FFR~~~~f~~l---~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~  144 (268)
T COG1352          69 TEFFRDPEHFEEL---RDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEK  144 (268)
T ss_pred             chhccCcHHHHHH---HHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHH
Confidence            3445555544442   22344444433221 3469999999999876433    3322      24799999872     


Q ss_pred             -----CC----------------------Cc------------EEeccCCCCCCCCCceeEEEEcCceeeccCCh--HHH
Q 010086          150 -----SK----------------------PL------------VISGEGHRIPFDGNTFDFVFVGGARLEKASKP--LDF  188 (518)
Q Consensus       150 -----~~----------------------~l------------~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp--~~~  188 (518)
                           ++                      ..            +.+.|...-++..+-||+|+|.++ +-.+..+  .+.
T Consensus       145 A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNV-LIYFd~~~q~~i  223 (268)
T COG1352         145 ARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNV-LIYFDEETQERI  223 (268)
T ss_pred             HhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcce-EEeeCHHHHHHH
Confidence                 11                      00            012233222324567999999998 6666554  468


Q ss_pred             HHHHHhcccCCcEEEEEe
Q 010086          189 ASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       189 l~Ei~RVLKPGG~lvi~~  206 (518)
                      +..++..|+|||++++.-
T Consensus       224 l~~f~~~L~~gG~LflG~  241 (268)
T COG1352         224 LRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             HHHHHHHhCCCCEEEEcc
Confidence            999999999999999954

>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae

Probab=97.20  E-value=0.0027  Score=60.22  Aligned_cols=171  Identities=18%  Similarity=0.310  Sum_probs=87.6

Q ss_pred             CCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhc-----cCCceEEEee--ceeecCCceEEEec
Q 010086          317 KNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK-----VKKKVKLLPY--AAWVRNETLSFQIN  389 (518)
Q Consensus       317 ~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~-----~~~~V~~~~~--Av~~~~~tl~f~~~  389 (518)
                      +.+-.|||+||| .|+ .-.--.++-..+    .|.|+||=.....+.+     +.|=|.++..  |++-.+|.--|++-
T Consensus        78 khdttyidigan-vgt-fcgiaarhitqg----kiiaiepltemensirmnvqlnnplvefhhfgcaigenegenifevy  151 (286)
T PF05575_consen   78 KHDTTYIDIGAN-VGT-FCGIAARHITQG----KIIAIEPLTEMENSIRMNVQLNNPLVEFHHFGCAIGENEGENIFEVY  151 (286)
T ss_pred             cCCceEEEeccc-ccc-chhhhhhhcccC----ceEEEechhhhhhheeeeeeeCCcceeeeecceeecccCCcceEEEE
Confidence            467789999999 575 212223333322    6999999776544432     4566666655  45554444444322


Q ss_pred             CCCCcchhhcccCCccc-cccccCCCCCCCCCcceeecccHHHHHhhc-CCCCCeEEEEeeccchhhhhHHHHHh-cCCc
Q 010086          390 HDPDKEVVVKGRGMGRI-QPVQSLSDGGFDGEVDRIQGFDFADWLKNT-VTDKDFVVMKMDVEGTEFDLIPRLFE-TGAI  466 (518)
Q Consensus       390 ~~~~~~~~~~~~g~~~i-~p~~~~~~~~~~g~~~~v~~vd~s~wl~~~-v~~~D~VVlKMDIEGaE~~vL~~l~~-~g~i  466 (518)
                      .-+.       + .+++ .+...+.     .+.+.-..+ +.+=|... +.+..-||+|+|.||||.++|..+.+ +.-.
T Consensus       152 efdn-------r-vsslyfqkntdi-----adkvknsqv-lvrklssldisptnsvvikidaegaeieilnqiyeftekh  217 (286)
T PF05575_consen  152 EFDN-------R-VSSLYFQKNTDI-----ADKVKNSQV-LVRKLSSLDISPTNSVVIKIDAEGAEIEILNQIYEFTEKH  217 (286)
T ss_pred             EecC-------c-cceEEEeccCcH-----HHhhcchHH-HHhhhhccccCCCceEEEEEcCCCcchhHHHHHHHHHhhc
Confidence            2111       1 0111 0000000     000000000 11112222 45667899999999999999999865 3333


Q ss_pred             cccc-EEEEEeecccccccCCCCCCCcccccHHHHHHHHHH-HhhCCeeeee
Q 010086          467 CLID-EIFLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTS-LRQNGVLVHQ  516 (518)
Q Consensus       467 ~~ID-eLfvE~H~~~~~~~~~g~~~~~~~~~~~~cl~L~~~-LR~~Gv~vHq  516 (518)
                      .-|. .+-.|+--.+.      ||   +.+|..|-..++.+ .-++..++|.
T Consensus       218 ngieyyicfefamghi------qr---snrtfdeifniinskfgskayfihp  260 (286)
T PF05575_consen  218 NGIEYYICFEFAMGHI------QR---SNRTFDEIFNIINSKFGSKAYFIHP  260 (286)
T ss_pred             CCeEEEEEehhhhhhh------hh---ccccHHHHHHHHhhcccCceEEeec
Confidence            3332 22334443333      33   35888888776543 4455566653

It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.16  E-value=0.0024  Score=60.98  Aligned_cols=98  Identities=14%  Similarity=0.110  Sum_probs=60.1

Q ss_pred             HHHcCCCCCCCeEEEEcCCCCHhHHHHHh--cCCC--------cEEEEecCCC----------------CCcEEeccCCC
Q 010086          108 LISEGYLSQSAKSLCVETQYGQDVFALKE--IGVE--------DSIGIFKKSS----------------KPLVISGEGHR  161 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~--~g~~--------~v~gID~s~~----------------~~l~~~~da~~  161 (518)
                      |+.....+++..+||--||+|......+.  ....        .++|.|+++.                ...+.+.|+.+
T Consensus        20 ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~   99 (179)
T PF01170_consen   20 LLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARE   99 (179)
T ss_dssp             HHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGG
T ss_pred             HHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhh
Confidence            44444567889999999999998744332  2222        3889999731                12356789999


Q ss_pred             CCCCCCceeEEEEcCc-eeeccCCh-------HHHHHHHHhcccCCcEEEEEec
Q 010086          162 IPFDGNTFDFVFVGGA-RLEKASKP-------LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       162 LPf~D~SFD~V~s~~~-~l~~~~dp-------~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +|+.++++|.|++.-= ... +...       ..+++|+.|+|+| ..+++...
T Consensus       100 l~~~~~~~d~IvtnPPyG~r-~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~  151 (179)
T PF01170_consen  100 LPLPDGSVDAIVTNPPYGRR-LGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTS  151 (179)
T ss_dssp             GGGTTSBSCEEEEE--STTS-HCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEES
T ss_pred             cccccCCCCEEEECcchhhh-ccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEEC
Confidence            9999999999999751 011 1111       2467999999999 44444443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.10  E-value=0.00032  Score=74.83  Aligned_cols=84  Identities=18%  Similarity=0.211  Sum_probs=61.6

Q ss_pred             CCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086          117 SAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGARLE  180 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~  180 (518)
                      +.+|||++||+|..+..++. .+...|+++|+++.               ...+..+|+..+....+.||+|+..-  + 
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP--~-  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP--F-  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC--C-
Confidence            46899999999999977754 45568999999742               11245677765432246799999853  3 


Q ss_pred             ccCChHHHHHHHHhcccCCcEEEEE
Q 010086          181 KASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       181 ~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                        -.|..++....+.++|||+++++
T Consensus       135 --Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        135 --GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             --CCcHHHHHHHHHHhcCCCEEEEE
Confidence              23567788878889999999998

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.09  E-value=0.0021  Score=63.66  Aligned_cols=88  Identities=19%  Similarity=0.311  Sum_probs=62.6

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHh-cC-CCcEEEEecCCC--------------CC--cEEe-ccCCCC-C-CCCCceeEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKE-IG-VEDSIGIFKKSS--------------KP--LVIS-GEGHRI-P-FDGNTFDFV  172 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~-~g-~~~v~gID~s~~--------------~~--l~~~-~da~~L-P-f~D~SFD~V  172 (518)
                      ++...+||+||++.|..+..++. .. -++++.||+++.              ..  ..+. +|+.+. . +.+++||+|
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli  136 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV  136 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence            35678999999999999887775 22 358999998741              11  1223 344322 2 568999999


Q ss_pred             EEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          173 FVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       173 ~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |.-..   .. +-..++.++.+.|||||++++-
T Consensus       137 FIDad---K~-~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         137 FIDAD---KA-DYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             EEeCC---hh-hCHHHHHHHHHHhCCCcEEEEe
Confidence            98542   21 2237899999999999999985

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.08  E-value=0.0025  Score=69.51  Aligned_cols=84  Identities=19%  Similarity=0.202  Sum_probs=55.3

Q ss_pred             CCeEEEEcCCCCHhHHHHHhcC-----CCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086          117 SAKSLCVETQYGQDVFALKEIG-----VEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~~g-----~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      +..|||||||+|-++....+.+     ..+|++|+.++.                ...++++|.+++..|. .+|+|+|-
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE  265 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE  265 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence            4679999999999985443332     469999998742                2235789999987765 89999986


Q ss_pred             CceeeccC---ChHHHHHHHHhcccCCcEEE
Q 010086          176 GARLEKAS---KPLDFASEIVRTLKPEGFAV  203 (518)
Q Consensus       176 ~~~l~~~~---dp~~~l~Ei~RVLKPGG~lv  203 (518)
                      .  |-.+-   --...+.-..|.|||||+.+
T Consensus       266 l--LGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  266 L--LGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             ----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             c--cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            5  32221   12256888899999999743

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PLN02476 O-methyltransferase

Probab=97.04  E-value=0.0025  Score=65.30  Aligned_cols=88  Identities=18%  Similarity=0.287  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----------------CCcEEeccCCC-CC-C----CCCce
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----------------KPLVISGEGHR-IP-F----DGNTF  169 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----------------~~l~~~~da~~-LP-f----~D~SF  169 (518)
                      +.+..+||+|||++|..+..+++. + .+.++++|.++.                ...++.|++.+ || +    .+++|
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F  195 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY  195 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence            345689999999999999887752 2 257999998741                12234566543 22 2    24689


Q ss_pred             eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          170 DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |+||.-..   . .+-...+..+.+.|||||++++-
T Consensus       196 D~VFIDa~---K-~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        196 DFAFVDAD---K-RMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             CEEEECCC---H-HHHHHHHHHHHHhcCCCcEEEEe
Confidence            99998652   1 12346788999999999999884

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.03  E-value=0.004  Score=61.41  Aligned_cols=115  Identities=19%  Similarity=0.209  Sum_probs=67.2

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------C--Cc---EEeccCCCCCCCCCceeEEEEcCceee
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------K--PL---VISGEGHRIPFDGNTFDFVFVGGARLE  180 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------~--~l---~~~~da~~LPf~D~SFD~V~s~~~~l~  180 (518)
                      ...++||.|+|-|+.+..|--.-+..|--+|..+.          .  ..   +.+...++.--+.+.+|+|++.-+ +-
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~-lg  133 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC-LG  133 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES--GG
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh-hc
Confidence            35699999999999997654323566767775421          1  11   112222222223579999999987 89


Q ss_pred             ccCChH--HHHHHHHhcccCCcEEEEE--ecCCCc-----------cCchhHhhhccC--ccEEEEec
Q 010086          181 KASKPL--DFASEIVRTLKPEGFAVVH--VRAKDE-----------YSFNSFLDLFNS--CKLVKSRD  231 (518)
Q Consensus       181 ~~~dp~--~~l~Ei~RVLKPGG~lvi~--~~~~~~-----------~s~~~~~~lf~~--~~~v~~~~  231 (518)
                      |+.|.+  .+++-+...|+|||++++=  +...+.           .+...+++||+.  +++++...
T Consensus       134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~  201 (218)
T PF05891_consen  134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEK  201 (218)
T ss_dssp             GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecc
Confidence            988654  7889999999999999984  322221           233457777763  45555444

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.02  E-value=0.0047  Score=59.56  Aligned_cols=93  Identities=17%  Similarity=0.083  Sum_probs=64.2

Q ss_pred             cCCCCCCC-eEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEE
Q 010086          111 EGYLSQSA-KSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVF  173 (518)
Q Consensus       111 ~gll~~~~-rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~  173 (518)
                      .-+++... +++|||+|.|.-...|+- .+..+++-+|....               ...++.+.+++ +-..++||+|+
T Consensus        42 ~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~  120 (184)
T PF02527_consen   42 LPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVT  120 (184)
T ss_dssp             GGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEE
T ss_pred             hhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEE
Confidence            33455554 999999999987655543 23357999996521               12345677777 67789999999


Q ss_pred             EcCceeeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      +..+     ......+.-+.+.|||||.+++.-+..
T Consensus       121 aRAv-----~~l~~l~~~~~~~l~~~G~~l~~KG~~  151 (184)
T PF02527_consen  121 ARAV-----APLDKLLELARPLLKPGGRLLAYKGPD  151 (184)
T ss_dssp             EESS-----SSHHHHHHHHGGGEEEEEEEEEEESS-
T ss_pred             eehh-----cCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence            9874     345678888999999999998876543

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.00  E-value=0.0071  Score=58.34  Aligned_cols=92  Identities=12%  Similarity=-0.011  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C--CcEEeccCCC-CC-C-CCC-ceeEEEEc
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K--PLVISGEGHR-IP-F-DGN-TFDFVFVG  175 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~--~l~~~~da~~-LP-f-~D~-SFD~V~s~  175 (518)
                      .+.++||++||+|.+...+...|...|+++|.++.              .  ..++++|+.. +. + ..+ .||+|+.-
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D  128 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD  128 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence            57899999999999998877778678999998741              1  1245667633 22 2 223 47888875


Q ss_pred             CceeeccCChHHHHHHH--HhcccCCcEEEEEecCC
Q 010086          176 GARLEKASKPLDFASEI--VRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei--~RVLKPGG~lvi~~~~~  209 (518)
                      -- +.. ......+.-+  ...|+++|++++.....
T Consensus       129 PP-y~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~~  162 (189)
T TIGR00095       129 PP-FFN-GALQALLELCENNWILEDTVLIVVEEDRE  162 (189)
T ss_pred             cC-CCC-CcHHHHHHHHHHCCCCCCCeEEEEEecCC
Confidence            43 221 1123333333  34799999999876543

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=96.96  E-value=0.0019  Score=66.58  Aligned_cols=70  Identities=19%  Similarity=0.261  Sum_probs=49.8

Q ss_pred             HHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCC
Q 010086          104 VFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGN  167 (518)
Q Consensus       104 l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~  167 (518)
                      +.+.+++...+.++.+|||||||+|.++..+.+.+ .+++|+|+++.                ...++.+|+.+.+++  
T Consensus        24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--  100 (294)
T PTZ00338         24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--  100 (294)
T ss_pred             HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--
Confidence            33344444456788999999999999998888765 68999999741                012457777665553  


Q ss_pred             ceeEEEEcC
Q 010086          168 TFDFVFVGG  176 (518)
Q Consensus       168 SFD~V~s~~  176 (518)
                      .||.|+++.
T Consensus       101 ~~d~VvaNl  109 (294)
T PTZ00338        101 YFDVCVANV  109 (294)
T ss_pred             ccCEEEecC
Confidence            578887764

>PRK04148 hypothetical protein; Provisional

Probab=96.96  E-value=0.0038  Score=57.27  Aligned_cols=60  Identities=13%  Similarity=0.011  Sum_probs=46.6

Q ss_pred             CCCeEEEEcCCCCH-hHHHHHhcCCCcEEEEecCCCC--------CcEEeccCCCCCCC-CCceeEEEEcC
Q 010086          116 QSAKSLCVETQYGQ-DVFALKEIGVEDSIGIFKKSSK--------PLVISGEGHRIPFD-GNTFDFVFVGG  176 (518)
Q Consensus       116 ~~~rvLDVGcGtG~-~~~~L~~~g~~~v~gID~s~~~--------~l~~~~da~~LPf~-D~SFD~V~s~~  176 (518)
                      ++.++||||||+|. .+..|++.| .+|+++|+++..        ..++.+|.-+-++. -..+|+|++..
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysir   85 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESG-FDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR   85 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence            45799999999996 788899888 699999998642        23567777665554 56799999865

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=96.87  E-value=0.0061  Score=62.59  Aligned_cols=86  Identities=20%  Similarity=0.289  Sum_probs=61.6

Q ss_pred             CeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-----------C------C--cEEeccCCCC-C-CCCCceeEEEEc
Q 010086          118 AKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-----------K------P--LVISGEGHRI-P-FDGNTFDFVFVG  175 (518)
Q Consensus       118 ~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-----------~------~--l~~~~da~~L-P-f~D~SFD~V~s~  175 (518)
                      .+||-||.|.|..+..+.+. ...+++.+|+.+.           +      +  .++.+|+.+. . ++. +||+|++-
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~fDvIi~D  156 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KFDVIIVD  156 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC-cCCEEEEc
Confidence            49999999999999777664 4679999998731           0      1  1334555432 2 333 89999986


Q ss_pred             CceeeccCCh------HHHHHHHHhcccCCcEEEEEec
Q 010086          176 GARLEKASKP------LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       176 ~~~l~~~~dp------~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ..  +. .-|      ..+++.+.|.|||+|+++.+..
T Consensus       157 ~t--dp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~  191 (282)
T COG0421         157 ST--DP-VGPAEALFTEEFYEGCRRALKEDGIFVAQAG  191 (282)
T ss_pred             CC--CC-CCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence            53  33 123      5789999999999999999843

>PHA01634 hypothetical protein

Probab=96.87  E-value=0.0017  Score=58.98  Aligned_cols=41  Identities=22%  Similarity=0.255  Sum_probs=32.2

Q ss_pred             CceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhc
Q 010086          318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK  365 (518)
Q Consensus       318 ~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~  365 (518)
                      +++.++|+||+ +|+|- -||.-.=-   +  .|+++||+|.+.+.+.
T Consensus        28 k~KtV~dIGA~-iGdSa-iYF~l~GA---K--~Vva~E~~~kl~k~~e   68 (156)
T PHA01634         28 YQRTIQIVGAD-CGSSA-LYFLLRGA---S--FVVQYEKEEKLRKKWE   68 (156)
T ss_pred             cCCEEEEecCC-ccchh-hHHhhcCc---c--EEEEeccCHHHHHHHH
Confidence            47889999998 78876 58874332   2  8999999999887765

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=96.84  E-value=0.0045  Score=58.72  Aligned_cols=93  Identities=16%  Similarity=0.183  Sum_probs=57.6

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-----------C----Cc--EEe---ccCC-CCCCCCCceeE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-----------K----PL--VIS---GEGH-RIPFDGNTFDF  171 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-----------~----~l--~~~---~da~-~LPf~D~SFD~  171 (518)
                      ..++.+||++|||+|.....++.. +..+|+..|..+.           .    ..  +..   ++.. .-.+....||+
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~  122 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV  122 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence            456789999999999988888777 5679999997631           0    00  111   1111 00124568999


Q ss_pred             EEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      |+.+.. +..-..-..+++=+.+.|+|+|.+++...
T Consensus       123 IlasDv-~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~  157 (173)
T PF10294_consen  123 ILASDV-LYDEELFEPLVRTLKRLLKPNGKVLLAYK  157 (173)
T ss_dssp             EEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred             EEEecc-cchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            999997 54434455678889999999999776654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=96.83  E-value=0.0023  Score=62.66  Aligned_cols=86  Identities=22%  Similarity=0.380  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCCCCHhHHHHHh-cC-CCcEEEEecCCC----------------CCcEEeccCCC-CC-C----CCCceeE
Q 010086          116 QSAKSLCVETQYGQDVFALKE-IG-VEDSIGIFKKSS----------------KPLVISGEGHR-IP-F----DGNTFDF  171 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~-~g-~~~v~gID~s~~----------------~~l~~~~da~~-LP-f----~D~SFD~  171 (518)
                      ...+||+|||++|..+..+++ .+ -++++.+|+++.                ...++.+++.+ || +    +.+.||+
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~  124 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF  124 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence            456999999999999988886 22 369999998741                12245666643 22 1    2468999


Q ss_pred             EEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ||.-.. =   .+-...+..+.+.|||||++++-
T Consensus       125 VFiDa~-K---~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  125 VFIDAD-K---RNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             EEEEST-G---GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEccc-c---cchhhHHHHHhhhccCCeEEEEc
Confidence            998653 1   12346788899999999999996

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=96.82  E-value=0.0063  Score=61.83  Aligned_cols=92  Identities=16%  Similarity=0.188  Sum_probs=61.9

Q ss_pred             CCCeEEEEcCCCCHhHHHHH-hcCCCcEEEEecCCCC----------------CcEE----eccC-CCCCCCCCceeEEE
Q 010086          116 QSAKSLCVETQYGQDVFALK-EIGVEDSIGIFKKSSK----------------PLVI----SGEG-HRIPFDGNTFDFVF  173 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~-~~g~~~v~gID~s~~~----------------~l~~----~~da-~~LPf~D~SFD~V~  173 (518)
                      .+..+||+|||+|..+..+. .++...+++||.|+..                ..++    ..+. .+.|..++..|+++
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv  227 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV  227 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence            34589999999999986654 4566799999998521                1111    2332 34467789999999


Q ss_pred             EcCceeecc------------CCh-------------HHHHHHHHhcccCCcEEEEEec
Q 010086          174 VGGARLEKA------------SKP-------------LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       174 s~~~~l~~~------------~dp-------------~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      |+--+..+=            +++             -.+..-+.|.|+|||.+.+.+.
T Consensus       228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence            975223221            111             1234667899999999999865

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=96.81  E-value=0.0043  Score=68.01  Aligned_cols=93  Identities=15%  Similarity=0.181  Sum_probs=64.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCCC---------------CcEEeccCCCCC-CCCCceeEEE--
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSSK---------------PLVISGEGHRIP-FDGNTFDFVF--  173 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~~---------------~l~~~~da~~LP-f~D~SFD~V~--  173 (518)
                      .++|.+|||++||+|.-+..+++.  +.+.+++.|+++..               ..+...|+..++ ...+.||.|+  
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD  190 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD  190 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence            478999999999999988777663  23589999998521               123456776653 3346799999  


Q ss_pred             --EcCc-eeeccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 010086          174 --VGGA-RLEKASK----------------PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       174 --s~~~-~l~~~~d----------------p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                        |++. .+..-++                ..+.+..+.+.|||||+++-.+
T Consensus       191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST  242 (470)
T PRK11933        191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST  242 (470)
T ss_pred             CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence              6542 2333111                1346788899999999987754

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.73  E-value=0.0059  Score=64.08  Aligned_cols=89  Identities=13%  Similarity=0.128  Sum_probs=64.7

Q ss_pred             CCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC------CcE--EeccCCCCCCCCCceeEEEEcCceeeccC
Q 010086          112 GYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK------PLV--ISGEGHRIPFDGNTFDFVFVGGARLEKAS  183 (518)
Q Consensus       112 gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~------~l~--~~~da~~LPf~D~SFD~V~s~~~~l~~~~  183 (518)
                      ..+.+|.++|||||++|..+..|.+.| ..|++||..+-.      +.+  .++++-...-+.+.+|.++|-.+     .
T Consensus       207 ~~~~~g~~vlDLGAsPGGWT~~L~~rG-~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-----e  280 (357)
T PRK11760        207 ERLAPGMRAVDLGAAPGGWTYQLVRRG-MFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV-----E  280 (357)
T ss_pred             cccCCCCEEEEeCCCCcHHHHHHHHcC-CEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc-----c
Confidence            456889999999999999999999988 599999976422      222  34444333112678999999653     4


Q ss_pred             ChHHHHHHHHhcccCCc--EEEEEe
Q 010086          184 KPLDFASEIVRTLKPEG--FAVVHV  206 (518)
Q Consensus       184 dp~~~l~Ei~RVLKPGG--~lvi~~  206 (518)
                      .|.+.++-|.+-|..|=  .+++.+
T Consensus       281 ~P~rva~lm~~Wl~~g~cr~aIfnL  305 (357)
T PRK11760        281 KPARVAELMAQWLVNGWCREAIFNL  305 (357)
T ss_pred             CHHHHHHHHHHHHhcCcccEEEEEE
Confidence            69999988999888772  345543

>PLN02823 spermine synthase

Probab=96.61  E-value=0.0074  Score=63.47  Aligned_cols=90  Identities=12%  Similarity=0.117  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC---------C--------C--cEEeccCCC-CCCCCCceeEEEE
Q 010086          116 QSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS---------K--------P--LVISGEGHR-IPFDGNTFDFVFV  174 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~---------~--------~--l~~~~da~~-LPf~D~SFD~V~s  174 (518)
                      ...+||.||+|.|..+..+.+ .+..+++.+|+++.         +        +  .++.+|+.+ |.-.+++||+|+.
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            446899999999998876655 34578999998741         0        1  134566544 2445689999998


Q ss_pred             cCceeeccC-C------hHHHHH-HHHhcccCCcEEEEEec
Q 010086          175 GGARLEKAS-K------PLDFAS-EIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       175 ~~~~l~~~~-d------p~~~l~-Ei~RVLKPGG~lvi~~~  207 (518)
                      -.  .+... .      -..+++ .+.|.|+|||+++++..
T Consensus       183 D~--~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~  221 (336)
T PLN02823        183 DL--ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG  221 (336)
T ss_pred             cC--CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence            63  23210 1      235777 89999999999988754

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=96.57  E-value=0.0026  Score=62.29  Aligned_cols=99  Identities=20%  Similarity=0.218  Sum_probs=52.1

Q ss_pred             HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHH-hcCCCcEEEEecCCCC------------------------CcEEec
Q 010086          103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALK-EIGVEDSIGIFKKSSK------------------------PLVISG  157 (518)
Q Consensus       103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~-~~g~~~v~gID~s~~~------------------------~l~~~~  157 (518)
                      ..+.+++++.-+.+++..+|||||.|..+...+ ..++..++||++.+..                        ..+.++
T Consensus        29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g  108 (205)
T PF08123_consen   29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG  108 (205)
T ss_dssp             HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred             HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence            344444444457889999999999999875443 4567789999986410                        011234


Q ss_pred             cCCCCCCCC---CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEE
Q 010086          158 EGHRIPFDG---NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAV  203 (518)
Q Consensus       158 da~~LPf~D---~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lv  203 (518)
                      |..+.++.+   ..-|+|++++..|+  ++....+.++..-||||-+++
T Consensus       109 dfl~~~~~~~~~s~AdvVf~Nn~~F~--~~l~~~L~~~~~~lk~G~~II  155 (205)
T PF08123_consen  109 DFLDPDFVKDIWSDADVVFVNNTCFD--PDLNLALAELLLELKPGARII  155 (205)
T ss_dssp             -TTTHHHHHHHGHC-SEEEE--TTT---HHHHHHHHHHHTTS-TT-EEE
T ss_pred             CccccHhHhhhhcCCCEEEEeccccC--HHHHHHHHHHHhcCCCCCEEE
Confidence            433322211   33589999874243  123456788889999987765

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=96.46  E-value=0.0039  Score=59.94  Aligned_cols=109  Identities=18%  Similarity=0.268  Sum_probs=66.6

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCC-CCC---CCCCceeEEEEc
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGH-RIP---FDGNTFDFVFVG  175 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~-~LP---f~D~SFD~V~s~  175 (518)
                      +|.++||+-||||.+.......|...|+.||.++.                ...++.+|+. .++   -.+..||+||.-
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD  121 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD  121 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence            68899999999999885555568789999998741                1123445532 222   257899999986


Q ss_pred             CceeeccCC-hHHHHHHHH--hcccCCcEEEEEecCCCccCchhHhhhccCccEEEEec
Q 010086          176 GARLEKASK-PLDFASEIV--RTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRD  231 (518)
Q Consensus       176 ~~~l~~~~d-p~~~l~Ei~--RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~  231 (518)
                      -= +.. .. -.+.+..+.  ..|+++|++++....+..     +...+.++++++.++
T Consensus       122 PP-Y~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~~-----~~~~~~~~~~~~~r~  173 (183)
T PF03602_consen  122 PP-YAK-GLYYEELLELLAENNLLNEDGLIIIEHSKKED-----LPESPGNWELIKERK  173 (183)
T ss_dssp             -S-TTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEETTSS-----S-SEETTEEEEEEEE
T ss_pred             CC-ccc-chHHHHHHHHHHHCCCCCCCEEEEEEecCCCC-----CccCCCCEEEEEEec
Confidence            41 111 11 145566665  799999999998765522     222346677777777

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.33  E-value=0.0025  Score=61.46  Aligned_cols=49  Identities=10%  Similarity=0.070  Sum_probs=36.2

Q ss_pred             hHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC
Q 010086          100 FYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS  149 (518)
Q Consensus       100 ~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~  149 (518)
                      ....++......|.+ .|..|+|+|||||.++...+-+|...|+|+|+.+
T Consensus        30 ~Aa~il~~a~~~g~l-~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~   78 (198)
T COG2263          30 LAAYILWVAYLRGDL-EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDP   78 (198)
T ss_pred             HHHHHHHHHHHcCCc-CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCH
Confidence            333444333334444 5678999999999999888878988999999974

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=96.27  E-value=0.051  Score=51.76  Aligned_cols=92  Identities=20%  Similarity=0.176  Sum_probs=67.6

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCC--CcEEEEecCCC---------C-CcEEeccCCCCC-----CCCCceeEEEEcC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGV--EDSIGIFKKSS---------K-PLVISGEGHRIP-----FDGNTFDFVFVGG  176 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~--~~v~gID~s~~---------~-~l~~~~da~~LP-----f~D~SFD~V~s~~  176 (518)
                      ...|.-||++|.|||-.+.++-+.|.  .++++|+.++.         + ..++.||+..|.     +++.-||.|+|..
T Consensus        46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~l  125 (194)
T COG3963          46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGL  125 (194)
T ss_pred             cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecc
Confidence            34566899999999999988877764  57899998741         2 225677777664     7899999999976


Q ss_pred             ceeeccCCh--HHHHHHHHhcccCCcEEEEEe
Q 010086          177 ARLEKASKP--LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       177 ~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      = +-+++-.  -+.+++..--|++||.++-..
T Consensus       126 P-ll~~P~~~~iaile~~~~rl~~gg~lvqft  156 (194)
T COG3963         126 P-LLNFPMHRRIAILESLLYRLPAGGPLVQFT  156 (194)
T ss_pred             c-cccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence            4 4444321  256788888999999876654

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=96.21  E-value=0.011  Score=57.80  Aligned_cols=84  Identities=17%  Similarity=0.180  Sum_probs=55.7

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      ++++..|||+-||-|.++..+++. ....|+++|+++.                .....++|+..++- ++.||-|++..
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l  177 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL  177 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence            678999999999999999877762 2468999999852                12246889888755 89999999865


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEE
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAV  203 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lv  203 (518)
                        .+.   -..++.++.+.+|+||++-
T Consensus       178 --p~~---~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  178 --PES---SLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             --TSS---GGGGHHHHHHHEEEEEEEE
T ss_pred             --hHH---HHHHHHHHHHHhcCCcEEE
Confidence              222   2367899999999999864

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=96.16  E-value=0.01  Score=58.39  Aligned_cols=90  Identities=21%  Similarity=0.217  Sum_probs=62.8

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------CCcE--EeccCC-CC-CCCCCceeEEEEcCce
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------KPLV--ISGEGH-RI-PFDGNTFDFVFVGGAR  178 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~~l~--~~~da~-~L-Pf~D~SFD~V~s~~~~  178 (518)
                      .+|++||.||-|-|.....+++....+-+-|+..+.            ...+  +.|.=+ .+ -++|++||.|+---. 
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy-  178 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY-  178 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech-
Confidence            688999999999999888887765445555665431            0111  222111 12 267999999997542 


Q ss_pred             eeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          179 LEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      -++.+|...+.+.+.|.|||||++-.-
T Consensus       179 ~e~yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  179 SELYEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             hhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence            277777888899999999999998664

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=96.15  E-value=0.016  Score=58.79  Aligned_cols=72  Identities=17%  Similarity=0.127  Sum_probs=56.9

Q ss_pred             HHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCCC-ce
Q 010086          104 VFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGN-TF  169 (518)
Q Consensus       104 l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~-SF  169 (518)
                      +++..++..-+.+++.||+||+|.|.++..|.+.+ ..|++|++.+.             .-.++.+|+...+|++. .+
T Consensus        18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~   96 (259)
T COG0030          18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA-ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQP   96 (259)
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCC
Confidence            35555555556779999999999999999999887 68999998741             12357899999999876 68


Q ss_pred             eEEEEcC
Q 010086          170 DFVFVGG  176 (518)
Q Consensus       170 D~V~s~~  176 (518)
                      +.|+++.
T Consensus        97 ~~vVaNl  103 (259)
T COG0030          97 YKVVANL  103 (259)
T ss_pred             CEEEEcC
Confidence            8999875

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.15  E-value=0.068  Score=55.90  Aligned_cols=110  Identities=10%  Similarity=0.096  Sum_probs=70.7

Q ss_pred             HHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHH----HHhcC-CCcEEEEecCC--------------CCCcE--
Q 010086           96 KAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFA----LKEIG-VEDSIGIFKKS--------------SKPLV--  154 (518)
Q Consensus        96 ~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~----L~~~g-~~~v~gID~s~--------------~~~l~--  154 (518)
                      ...+.+..-..++.+  .+.++..++|+|||+|.-+..    |.+.+ ....++||+|.              +|.+.  
T Consensus        58 ~E~~iL~~~~~~Ia~--~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~  135 (319)
T TIGR03439        58 DEIEILKKHSSDIAA--SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCA  135 (319)
T ss_pred             HHHHHHHHHHHHHHH--hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEE
Confidence            344445544444443  256778999999999986543    33222 35789999983              12222  


Q ss_pred             -EeccCCC----CC--CCCCceeEEEEcCceeeccCChH--HHHHHHHh-cccCCcEEEEEec
Q 010086          155 -ISGEGHR----IP--FDGNTFDFVFVGGARLEKASKPL--DFASEIVR-TLKPEGFAVVHVR  207 (518)
Q Consensus       155 -~~~da~~----LP--f~D~SFD~V~s~~~~l~~~~dp~--~~l~Ei~R-VLKPGG~lvi~~~  207 (518)
                       +.||-..    +|  -..+...+++..++++.+++.++  .+++++.+ .|+|||.+++.+.
T Consensus       136 ~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D  198 (319)
T TIGR03439       136 GLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD  198 (319)
T ss_pred             EEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence             2444322    22  12245678887775588887554  57899999 9999999999764

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=96.14  E-value=0.012  Score=59.21  Aligned_cols=86  Identities=15%  Similarity=0.215  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----------------CCcEEeccCCC-CC-C-----CCCcee
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----------------KPLVISGEGHR-IP-F-----DGNTFD  170 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----------------~~l~~~~da~~-LP-f-----~D~SFD  170 (518)
                      +..+||+||+++|..+..+++. + -++++.+|.++.                ...++.|++.+ || +     .+++||
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD  158 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD  158 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence            4569999999999988877752 2 358999998741                11234565543 22 1     136999


Q ss_pred             EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +||.-..   . .+-...+..+.+.|+|||++++-
T Consensus       159 ~iFiDad---K-~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        159 FIFVDAD---K-DNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             EEEecCC---H-HHhHHHHHHHHHhcCCCeEEEEc
Confidence            9998652   1 11235677888999999998874

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.13  E-value=0.0022  Score=62.74  Aligned_cols=87  Identities=15%  Similarity=0.174  Sum_probs=61.1

Q ss_pred             CCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------CCcEEeccCCCCCCCCCceeEEEEcCceeeccCChHHHH
Q 010086          117 SAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFA  189 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l  189 (518)
                      ..++||+|+|.|..+..++.. +.+|++.++|..       ..--+.+..+ ---.|-.||+|.|.+. |+...+|.+.+
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~ynVl~~~e-w~~t~~k~dli~clNl-LDRc~~p~kLL  189 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKNYNVLTEIE-WLQTDVKLDLILCLNL-LDRCFDPFKLL  189 (288)
T ss_pred             CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcCCceeeehh-hhhcCceeehHHHHHH-HHhhcChHHHH
Confidence            368999999999998777632 456777776531       0000111111 0112456999999997 89889999999


Q ss_pred             HHHHhcccC-CcEEEEEe
Q 010086          190 SEIVRTLKP-EGFAVVHV  206 (518)
Q Consensus       190 ~Ei~RVLKP-GG~lvi~~  206 (518)
                      +.|+-||.| .|.+++..
T Consensus       190 ~Di~~vl~psngrvivaL  207 (288)
T KOG3987|consen  190 EDIHLVLAPSNGRVIVAL  207 (288)
T ss_pred             HHHHHHhccCCCcEEEEE
Confidence            999999999 88877764

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=96.13  E-value=0.011  Score=61.41  Aligned_cols=89  Identities=18%  Similarity=0.110  Sum_probs=64.4

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGARLE  180 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~  180 (518)
                      .+.-|||||||+|.++...++.|..+|++|+-|+-               ...++.|..+++.+|. ..|+++|--  +-
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE-k~DviISEP--MG  253 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPE-KVDVIISEP--MG  253 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCch-hccEEEecc--ch
Confidence            35678999999999987777889889999998741               1235678888888874 599999865  22


Q ss_pred             ccCChHH---HHHHHHhcccCCcEEEEEec
Q 010086          181 KASKPLD---FASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       181 ~~~dp~~---~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      .+..-++   ..-...|-|||.|..+=+++
T Consensus       254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT~g  283 (517)
T KOG1500|consen  254 YMLVNERMLESYLHARKWLKPNGKMFPTVG  283 (517)
T ss_pred             hhhhhHHHHHHHHHHHhhcCCCCcccCccc
Confidence            3322233   33456799999998766553

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.12  E-value=0.059  Score=53.48  Aligned_cols=121  Identities=17%  Similarity=0.216  Sum_probs=73.6

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCCC-----------CcE--EeccCCCC----CCCCCceeEEE
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSSK-----------PLV--ISGEGHRI----PFDGNTFDFVF  173 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~~-----------~l~--~~~da~~L----Pf~D~SFD~V~  173 (518)
                      .+++|++||.+|+.+|..+..+.+. | .+.|++++.|+.+           +.+  +.+|+..-    ++ =+.+|+|+
T Consensus        70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~l-v~~VDvI~  148 (229)
T PF01269_consen   70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRML-VEMVDVIF  148 (229)
T ss_dssp             S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTT-S--EEEEE
T ss_pred             CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcc-cccccEEE
Confidence            4789999999999999998888773 4 4689999998521           222  45666531    23 34899999


Q ss_pred             EcCceeeccCChHH-HHHHHHhcccCCcEEEEEecCC--Ccc-C-----chhHhhhc-cCccEEEEeccCCCCCC
Q 010086          174 VGGARLEKASKPLD-FASEIVRTLKPEGFAVVHVRAK--DEY-S-----FNSFLDLF-NSCKLVKSRDIDGIDSS  238 (518)
Q Consensus       174 s~~~~l~~~~dp~~-~l~Ei~RVLKPGG~lvi~~~~~--~~~-s-----~~~~~~lf-~~~~~v~~~~v~~~~~~  238 (518)
                      +--+   + ++..+ ++.-+..-||+||.+++.+-+.  |.. +     .....+|= .+|+++..-..++|+-.
T Consensus       149 ~DVa---Q-p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~d  219 (229)
T PF01269_consen  149 QDVA---Q-PDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERD  219 (229)
T ss_dssp             EE-S---S-TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTT
T ss_pred             ecCC---C-hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCC
Confidence            8542   2 23333 5566778999999999887332  110 0     01233442 25788887777777754

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PRK00536 speE spermidine synthase; Provisional

Probab=96.07  E-value=0.03  Score=57.00  Aligned_cols=85  Identities=11%  Similarity=0.035  Sum_probs=59.1

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------C--------CcE-EeccCCCCCCCCCceeEEEEcC
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------K--------PLV-ISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------~--------~l~-~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      +...+||-||.|.|..++.+.+.. .+|+-+|+.+.         |        |-+ +.....  .-..++||+|+.-.
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~--~~~~~~fDVIIvDs  147 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL--DLDIKKYDLIICLQ  147 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhh--hccCCcCCEEEEcC
Confidence            345799999999999987776654 48999998631         1        111 111111  01237899999864


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      .      ++..+++.+.|.|+|||+++.+.+.
T Consensus       148 ~------~~~~fy~~~~~~L~~~Gi~v~Qs~s  173 (262)
T PRK00536        148 E------PDIHKIDGLKRMLKEDGVFISVAKH  173 (262)
T ss_pred             C------CChHHHHHHHHhcCCCcEEEECCCC
Confidence            2      3567889999999999999998653

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=96.04  E-value=0.028  Score=59.41  Aligned_cols=111  Identities=12%  Similarity=0.037  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCC-C-------C---C-----C
Q 010086          118 AKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRI-P-------F---D-----G  166 (518)
Q Consensus       118 ~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~L-P-------f---~-----D  166 (518)
                      .++||++||+|.++..|++.. ..|+|+|+++.               ...++.+|+.+. +       +   .     .
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  277 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS  277 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence            479999999999999888654 69999998741               112456665542 1       1   0     1


Q ss_pred             CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCC
Q 010086          167 NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDS  237 (518)
Q Consensus       167 ~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~  237 (518)
                      ..||+|+.---  . .--...++   ..+++|++++++.......  ...+..|...|++.++.-+|.|=.
T Consensus       278 ~~~d~v~lDPP--R-~G~~~~~l---~~l~~~~~ivYvsC~p~tl--aRDl~~L~~~Y~l~~v~~~DmFP~  340 (353)
T TIGR02143       278 YNCSTIFVDPP--R-AGLDPDTC---KLVQAYERILYISCNPETL--KANLEQLSETHRVERFALFDQFPY  340 (353)
T ss_pred             CCCCEEEECCC--C-CCCcHHHH---HHHHcCCcEEEEEcCHHHH--HHHHHHHhcCcEEEEEEEcccCCC
Confidence            13788776320  0 00001233   3445689999987643211  133444445599999999998544

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=96.03  E-value=0.023  Score=57.86  Aligned_cols=72  Identities=17%  Similarity=0.181  Sum_probs=54.0

Q ss_pred             HHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------C---C-cEEeccCCCCCCC
Q 010086          102 SSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------K---P-LVISGEGHRIPFD  165 (518)
Q Consensus       102 ~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~---~-l~~~~da~~LPf~  165 (518)
                      +.+.+.+++..-+++++.||+||.|||.++..|-+.| .+|+++++.+.            +   . .++.||....++|
T Consensus        44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~-kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P  122 (315)
T KOG0820|consen   44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG-KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP  122 (315)
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc-CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence            4566666777789999999999999999999998888 89999998742            1   1 1346676555433


Q ss_pred             CCceeEEEEcC
Q 010086          166 GNTFDFVFVGG  176 (518)
Q Consensus       166 D~SFD~V~s~~  176 (518)
                        .||.++++.
T Consensus       123 --~fd~cVsNl  131 (315)
T KOG0820|consen  123 --RFDGCVSNL  131 (315)
T ss_pred             --ccceeeccC
Confidence              578877754

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.86  E-value=0.056  Score=54.07  Aligned_cols=110  Identities=15%  Similarity=0.095  Sum_probs=77.5

Q ss_pred             hhhccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------CCcEE-
Q 010086           85 RRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------KPLVI-  155 (518)
Q Consensus        85 ~~~~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------~~l~~-  155 (518)
                      .+..|-|+...|-...+.       .-.+..++..+||||+.||.++.-+-+.|...|+|||....        .+-++ 
T Consensus        55 ~~~~yVSRG~~KL~~ale-------~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~  127 (245)
T COG1189          55 EEQPYVSRGGLKLEKALE-------EFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIV  127 (245)
T ss_pred             cCcCccccHHHHHHHHHH-------hcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEE
Confidence            457788876666322222       22355678899999999999999888899899999998642        12222 


Q ss_pred             --eccCCCCC---CCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          156 --SGEGHRIP---FDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       156 --~~da~~LP---f~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                        +-+++.+-   |.. -.|+++|--+ |-.   ....+..+..+|+|+|.++..+
T Consensus       128 ~E~tN~r~l~~~~~~~-~~d~~v~DvS-FIS---L~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         128 LERTNVRYLTPEDFTE-KPDLIVIDVS-FIS---LKLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             EecCChhhCCHHHccc-CCCeEEEEee-hhh---HHHHHHHHHHhcCCCceEEEEe
Confidence              34555441   333 6789998654 543   4577899999999999988877

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=95.85  E-value=0.04  Score=58.47  Aligned_cols=112  Identities=12%  Similarity=0.058  Sum_probs=68.3

Q ss_pred             CCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCC-C-CC--------------
Q 010086          117 SAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRI-P-FD--------------  165 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~L-P-f~--------------  165 (518)
                      +.++||++||+|.++..+++. ...|+|||.++.               ...++.+|+.+. + +.              
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~  285 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK  285 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence            357999999999999988865 468999998741               112455665442 1 10              


Q ss_pred             CCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCC
Q 010086          166 GNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDS  237 (518)
Q Consensus       166 D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~  237 (518)
                      ...||+|+.--=  . .--..+++   ..+.+|++++++.......  ...+..|...|++.++.-+|.|=.
T Consensus       286 ~~~~D~v~lDPP--R-~G~~~~~l---~~l~~~~~ivyvSC~p~tl--arDl~~L~~gY~l~~v~~~DmFPq  349 (362)
T PRK05031        286 SYNFSTIFVDPP--R-AGLDDETL---KLVQAYERILYISCNPETL--CENLETLSQTHKVERFALFDQFPY  349 (362)
T ss_pred             CCCCCEEEECCC--C-CCCcHHHH---HHHHccCCEEEEEeCHHHH--HHHHHHHcCCcEEEEEEEcccCCC
Confidence            225899887431  0 00011233   3344588888887653211  123333435799999999988544

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.82  E-value=0.017  Score=58.47  Aligned_cols=95  Identities=20%  Similarity=0.141  Sum_probs=58.4

Q ss_pred             HHcCCCCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC------------------------------CC-----
Q 010086          109 ISEGYLSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS------------------------------KP-----  152 (518)
Q Consensus       109 ~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~------------------------------~~-----  152 (518)
                      ...|.+ +|.++||||||+-.. ..|.- .-+.+++..|.++.                              ..     
T Consensus        50 f~~g~~-~g~~llDiGsGPtiy-~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~  127 (256)
T PF01234_consen   50 FSSGGV-KGETLLDIGSGPTIY-QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEK  127 (256)
T ss_dssp             HHTSSS--EEEEEEES-TT--G-GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHH
T ss_pred             hCccCc-CCCEEEEeCCCcHHH-hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhH
Confidence            344433 578999999998433 22221 23468888887520                              00     


Q ss_pred             ---------cEEeccCCCC-CCCC-----CceeEEEEcCceeeccC-ChH---HHHHHHHhcccCCcEEEEEe
Q 010086          153 ---------LVISGEGHRI-PFDG-----NTFDFVFVGGARLEKAS-KPL---DFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       153 ---------l~~~~da~~L-Pf~D-----~SFD~V~s~~~~l~~~~-dp~---~~l~Ei~RVLKPGG~lvi~~  206 (518)
                               .++..|.++. |++.     ..||.|+|... ++-+. +++   ++++-+.+.|||||.+++..
T Consensus       128 e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fc-LE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~  199 (256)
T PF01234_consen  128 EEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFC-LESACKDLDEYRRALRNISSLLKPGGHLILAG  199 (256)
T ss_dssp             HHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESS-HHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHH-HHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                     0245677665 4544     25999999886 76654 444   67899999999999998874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=95.68  E-value=0.098  Score=50.63  Aligned_cols=114  Identities=17%  Similarity=0.124  Sum_probs=71.8

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCC-CCCCC--ceeEEEEcC
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRI-PFDGN--TFDFVFVGG  176 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~L-Pf~D~--SFD~V~s~~  176 (518)
                      .|.++||+=+|+|.+.......|...++.||.+..                ...++.+|+... +-...  .||+||.--
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP  122 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP  122 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence            68899999999999874444467789999998731                112345555532 22223  499999865


Q ss_pred             ceee-ccCChHHHHHH--HHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCCC
Q 010086          177 ARLE-KASKPLDFASE--IVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSS  238 (518)
Q Consensus       177 ~~l~-~~~dp~~~l~E--i~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~  238 (518)
                      = ++ .+.++...+..  -...|+|||.+++......     .+..+..++++++.+.   |+.+
T Consensus       123 P-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~-----~~~~~~~~~~~~r~k~---yG~t  178 (187)
T COG0742         123 P-YAKGLLDKELALLLLEENGWLKPGALIVVEHDKDV-----ELPELPANFELHREKK---YGQT  178 (187)
T ss_pred             C-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCCc-----CccccCCCeEEEEEee---cCCE
Confidence            3 33 12223333333  5678999999999875432     2223356777777666   5543

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=95.39  E-value=0.015  Score=60.73  Aligned_cols=61  Identities=10%  Similarity=-0.017  Sum_probs=39.5

Q ss_pred             CCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCC------------CCCc-----E-EeccCCCCC----CCCCceeEE
Q 010086          116 QSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKS------------SKPL-----V-ISGEGHRIP----FDGNTFDFV  172 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~------------~~~l-----~-~~~da~~LP----f~D~SFD~V  172 (518)
                      ++.++||||||+|.....|.. ....+++|+|+++            .+.+     + .+.+...+.    .+++.||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            457999999999987766543 2225899999974            1111     1 123322221    357799999


Q ss_pred             EEcC
Q 010086          173 FVGG  176 (518)
Q Consensus       173 ~s~~  176 (518)
                      +|+-
T Consensus       194 vcNP  197 (321)
T PRK11727        194 LCNP  197 (321)
T ss_pred             EeCC
Confidence            9986

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.39  E-value=0.068  Score=54.56  Aligned_cols=81  Identities=14%  Similarity=0.127  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCCC------------CcE---Eec--cCCC
Q 010086          101 YSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSSK------------PLV---ISG--EGHR  161 (518)
Q Consensus       101 ~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~~------------~l~---~~~--da~~  161 (518)
                      +..+|.++.....--...+|||+|+|+|..+-+..+.  ...+++.+|.|+..            ...   ...  -...
T Consensus        18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~   97 (274)
T PF09243_consen   18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDF   97 (274)
T ss_pred             HHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccc
Confidence            3456666665432223468999999999987665542  35689999987421            000   000  1112


Q ss_pred             CCCCCCceeEEEEcCceeeccCC
Q 010086          162 IPFDGNTFDFVFVGGARLEKASK  184 (518)
Q Consensus       162 LPf~D~SFD~V~s~~~~l~~~~d  184 (518)
                      +++...  |+|+++++ |..+++
T Consensus        98 ~~~~~~--DLvi~s~~-L~EL~~  117 (274)
T PF09243_consen   98 LPFPPD--DLVIASYV-LNELPS  117 (274)
T ss_pred             ccCCCC--cEEEEehh-hhcCCc
Confidence            344333  99999998 888876

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=95.35  E-value=0.041  Score=55.31  Aligned_cols=91  Identities=19%  Similarity=0.240  Sum_probs=60.5

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC------------------C-CcEEeccCCCC-CCCCC-ceeEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS------------------K-PLVISGEGHRI-PFDGN-TFDFV  172 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~------------------~-~l~~~~da~~L-Pf~D~-SFD~V  172 (518)
                      +...+||-||.|.|..+..+.+.. ..+++.+|+++.                  + ..++.+|+... --..+ .||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            357899999999999998887654 578999998731                  1 12345555331 11223 89999


Q ss_pred             EEcCceeecc-C----ChHHHHHHHHhcccCCcEEEEEec
Q 010086          173 FVGGARLEKA-S----KPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       173 ~s~~~~l~~~-~----dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +.-.  .+-. +    .-..+++.+.|.|+|||++++...
T Consensus       155 i~D~--~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~  192 (246)
T PF01564_consen  155 IVDL--TDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG  192 (246)
T ss_dssp             EEES--SSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEeC--CCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence            9854  2311 1    124789999999999999999863

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=95.34  E-value=0.02  Score=54.07  Aligned_cols=113  Identities=19%  Similarity=0.209  Sum_probs=68.4

Q ss_pred             CCeEEEEcCCCCHh-HHHHHhcCCCcEEEEecCCCCC--cE--EeccCCCCCC------CCCceeEEEEcCceeecc---
Q 010086          117 SAKSLCVETQYGQD-VFALKEIGVEDSIGIFKKSSKP--LV--ISGEGHRIPF------DGNTFDFVFVGGARLEKA---  182 (518)
Q Consensus       117 ~~rvLDVGcGtG~~-~~~L~~~g~~~v~gID~s~~~~--l~--~~~da~~LPf------~D~SFD~V~s~~~~l~~~---  182 (518)
                      +.+.+-+|...-.. +.+|+ .|..++..|+.++-..  .+  .........|      -.++||++.|.++ ++|+   
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~-~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~s-iEh~GLG   79 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQ-HGAAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSS-IEHFGLG   79 (177)
T ss_pred             CceEEEEecCCchhhHHHHH-cCCceEEEEeecccccCcccccccccccHHHHHHHHHHhhccchhhheech-hcccccc
Confidence            45677787775332 23333 4666788888643110  00  0000000011      2568999999997 8887   


Q ss_pred             -----CCh---HHHHHHHHhcccCCcEEEEEecCC-Cc--------cCchhHhhhccCccEEEEec
Q 010086          183 -----SKP---LDFASEIVRTLKPEGFAVVHVRAK-DE--------YSFNSFLDLFNSCKLVKSRD  231 (518)
Q Consensus       183 -----~dp---~~~l~Ei~RVLKPGG~lvi~~~~~-~~--------~s~~~~~~lf~~~~~v~~~~  231 (518)
                           .||   .+++.++.|+|||||.+++.+.-+ |.        |+...+..+|..++.+....
T Consensus        80 RYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~i~tfs  145 (177)
T PF03269_consen   80 RYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEWIDTFS  145 (177)
T ss_pred             ccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEEEeeec
Confidence                 234   368899999999999998875322 22        44445566688888877654

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.30  E-value=0.14  Score=50.98  Aligned_cols=86  Identities=20%  Similarity=0.298  Sum_probs=58.1

Q ss_pred             CCCeEEEEcCCCCHhHHHHHh-c-CCCcEEEEecCCCC----------------CcEEeccCCC-C-----CCCCCceeE
Q 010086          116 QSAKSLCVETQYGQDVFALKE-I-GVEDSIGIFKKSSK----------------PLVISGEGHR-I-----PFDGNTFDF  171 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~-~-g~~~v~gID~s~~~----------------~l~~~~da~~-L-----Pf~D~SFD~  171 (518)
                      ...++||||.=||..+.+++. + .-++|+++|+.+..                ..++++.+.+ |     -.+.++|||
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf  152 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF  152 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence            567999999999987766554 1 13699999997421                1233443321 1     135789999


Q ss_pred             EEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ||.-.-    -.+-...+.+..|.||+||++++-
T Consensus       153 aFvDad----K~nY~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  153 AFVDAD----KDNYSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             EEEccc----hHHHHHHHHHHHhhcccccEEEEe
Confidence            997431    112236789999999999999884

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=95.09  E-value=0.056  Score=58.02  Aligned_cols=96  Identities=15%  Similarity=0.173  Sum_probs=66.4

Q ss_pred             CCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------------CCcEEeccCCCC-CC---CCCcee
Q 010086          112 GYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------------KPLVISGEGHRI-PF---DGNTFD  170 (518)
Q Consensus       112 gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------------~~l~~~~da~~L-Pf---~D~SFD  170 (518)
                      ++++ |.+|||+=|=||.++...+.-|..+||+||+|..                 +..++++|+-+. .-   ....||
T Consensus       214 ~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fD  292 (393)
T COG1092         214 ELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFD  292 (393)
T ss_pred             hhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCccc
Confidence            3445 9999999999999997777778669999999841                 123456665332 11   245999


Q ss_pred             EEEEcCceeeccC--------ChHHHHHHHHhcccCCcEEEEEecC
Q 010086          171 FVFVGGARLEKAS--------KPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       171 ~V~s~~~~l~~~~--------dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +|+.--=+|-.-+        +-.+.+.+..++|+|||++++.+.+
T Consensus       293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~  338 (393)
T COG1092         293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS  338 (393)
T ss_pred             EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            9996431132211        1235678999999999999987643

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.97  E-value=0.021  Score=53.11  Aligned_cols=61  Identities=13%  Similarity=0.107  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcC
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      .|.+++|+|||.|.+..+..-.+...|+|+|+.+.              ...+++++...+-+..+.||.++.+.
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNp  122 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP  122 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence            57899999999999887776666678999999741              12356888888888889999998865

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=94.95  E-value=0.083  Score=48.28  Aligned_cols=54  Identities=13%  Similarity=0.068  Sum_probs=40.8

Q ss_pred             HHHhhHHHHHHHHHHc-CCCCCCCeEEEEcCCCCHhHHHHHh-----cCCCcEEEEecCC
Q 010086           96 KAVNFYSSVFQDLISE-GYLSQSAKSLCVETQYGQDVFALKE-----IGVEDSIGIFKKS  149 (518)
Q Consensus        96 ~~v~~~~~l~~~L~~~-gll~~~~rvLDVGcGtG~~~~~L~~-----~g~~~v~gID~s~  149 (518)
                      ..++.+..+++.+.+. +...+...|+|+|||.|.++..|+.     ....+|+|||.++
T Consensus         4 ~Ei~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~   63 (141)
T PF13679_consen    4 HEIERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE   63 (141)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc
Confidence            3566666777776654 4446678999999999999988876     3346999999875

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.91  E-value=0.1  Score=54.92  Aligned_cols=85  Identities=14%  Similarity=0.134  Sum_probs=57.6

Q ss_pred             CCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEec-cCCCCCCCCCceeEEEEcCcee
Q 010086          112 GYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISG-EGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       112 gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~-da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      ..++||.+|+-+|+|. |..+..+++ .| .+|+++|.++..         ..++.+ +...++--.+.||+|+..-.  
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~--  238 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG--  238 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC--
Confidence            3478999999999993 444555555 78 899999998641         122332 22222211224999998652  


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEE
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                            ...+....+.||+||.+++.
T Consensus       239 ------~~~~~~~l~~l~~~G~~v~v  258 (339)
T COG1064         239 ------PATLEPSLKALRRGGTLVLV  258 (339)
T ss_pred             ------hhhHHHHHHHHhcCCEEEEE
Confidence                  34678899999999999886

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=94.79  E-value=0.087  Score=51.35  Aligned_cols=94  Identities=15%  Similarity=0.113  Sum_probs=58.5

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC------C----------C-----cEEeccCCCCCCCCCce
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS------K----------P-----LVISGEGHRIPFDGNTF  169 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~------~----------~-----l~~~~da~~LPf~D~SF  169 (518)
                      .++++++|+|+=.|.|..+..|... | -+.|++.-..+.      .          +     .++-...-.++ +-+..
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~  123 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKL  123 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcc
Confidence            4799999999999999999888752 3 235666543321      0          0     01112233344 45556


Q ss_pred             eEEEEcCc-e-----eeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          170 DFVFVGGA-R-----LEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       170 D~V~s~~~-~-----l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      |+++..+. +     +-|-....++.+++++.|||||++.+.--
T Consensus       124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH  167 (238)
T COG4798         124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH  167 (238)
T ss_pred             cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence            66665332 0     11222346889999999999999988753

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=94.76  E-value=0.12  Score=52.99  Aligned_cols=137  Identities=16%  Similarity=0.141  Sum_probs=72.2

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHh--------cCCCcEEEEecCCCC---------------C--cEEeccCCCCCC-C-C
Q 010086          114 LSQSAKSLCVETQYGQDVFALKE--------IGVEDSIGIFKKSSK---------------P--LVISGEGHRIPF-D-G  166 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~--------~g~~~v~gID~s~~~---------------~--l~~~~da~~LPf-~-D  166 (518)
                      ..++.+|||-+||+|.+..++.+        .....++|+|+++..               .  .+..+|.-..+. . .
T Consensus        44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~  123 (311)
T PF02384_consen   44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN  123 (311)
T ss_dssp             T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred             ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence            45677899999999998755443        234689999986421               1  134555443333 2 5


Q ss_pred             CceeEEEEcCc-eee-c----c-CC------------h-HHHHHHHHhcccCCcEEEEEecCCCccC---chhHhh-hcc
Q 010086          167 NTFDFVFVGGA-RLE-K----A-SK------------P-LDFASEIVRTLKPEGFAVVHVRAKDEYS---FNSFLD-LFN  222 (518)
Q Consensus       167 ~SFD~V~s~~~-~l~-~----~-~d------------p-~~~l~Ei~RVLKPGG~lvi~~~~~~~~s---~~~~~~-lf~  222 (518)
                      ..||+|+++-= ... +    . .+            . ..++..+.+.||+||++++.+...-.++   ...+++ |..
T Consensus       124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~  203 (311)
T PF02384_consen  124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLE  203 (311)
T ss_dssp             --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHH
T ss_pred             cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHHh
Confidence            89999998752 012 1    0 00            0 1477889999999999877764322111   123333 345


Q ss_pred             CccEEEEeccC--CC-CCCccceeEEEEeecc
Q 010086          223 SCKLVKSRDID--GI-DSSLPYIREIVLKKES  251 (518)
Q Consensus       223 ~~~~v~~~~v~--~~-~~~~p~~~~vv~kK~~  251 (518)
                      ++.+..+-...  .| +..+|+ ..++++|..
T Consensus       204 ~~~i~aVI~Lp~~~F~~t~v~t-~ilil~k~~  234 (311)
T PF02384_consen  204 NGYIEAVISLPSNLFKPTGVPT-SILILNKKK  234 (311)
T ss_dssp             HEEEEEEEE--TTSSSSSSS-E-EEEEEEESS
T ss_pred             hchhhEEeecccceecccCcCc-eEEEEeecc
Confidence            55544433321  12 223433 357777764

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.60  E-value=0.52  Score=46.36  Aligned_cols=122  Identities=14%  Similarity=0.167  Sum_probs=76.7

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCCCC-----------c--EEeccCCCC---CCCCCceeEEEEc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSSKP-----------L--VISGEGHRI---PFDGNTFDFVFVG  175 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~~~-----------l--~~~~da~~L---Pf~D~SFD~V~s~  175 (518)
                      .+++|++||=+|+.+|..+...++. |.+.++||+.|+.+.           .  -+.+||..-   -+-=+.+|+|+.-
T Consensus        73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D  152 (231)
T COG1889          73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD  152 (231)
T ss_pred             CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe
Confidence            3689999999999999998888773 546899999986421           1  124555421   1123458888874


Q ss_pred             CceeeccCChH-HHHHHHHhcccCCcEEEEEecCCC---ccCch-----hHhhh-ccCccEEEEeccCCCCCC
Q 010086          176 GARLEKASKPL-DFASEIVRTLKPEGFAVVHVRAKD---EYSFN-----SFLDL-FNSCKLVKSRDIDGIDSS  238 (518)
Q Consensus       176 ~~~l~~~~dp~-~~l~Ei~RVLKPGG~lvi~~~~~~---~~s~~-----~~~~l-f~~~~~v~~~~v~~~~~~  238 (518)
                      -+  +  ++.. -++.-+..-||+||.+++.+-+..   +-+..     .+.+| -..++++..-..++|+-.
T Consensus       153 VA--Q--p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePye~D  221 (231)
T COG1889         153 VA--Q--PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPYEKD  221 (231)
T ss_pred             cC--C--chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCcccc
Confidence            32  1  2222 356788999999998777653321   11111     22333 134578888888777754

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=94.52  E-value=0.4  Score=49.25  Aligned_cols=90  Identities=13%  Similarity=0.141  Sum_probs=50.0

Q ss_pred             CeEEEEcCCCCHhH-HHHHhc-C-CCcEEEEecCCC-----------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          118 AKSLCVETQYGQDV-FALKEI-G-VEDSIGIFKKSS-----------------KPLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       118 ~rvLDVGcGtG~~~-~~L~~~-g-~~~v~gID~s~~-----------------~~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      .||+.||+|+=-++ ..|++. + ...++++|+++.                 .+.++.+|+...+.+-..||+|+...-
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal  201 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL  201 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence            59999999985444 445542 3 246899998741                 123556788777766679999997652


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      .=..-.+..+.+..+.+.++||..+++-..
T Consensus       202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa  231 (276)
T PF03059_consen  202 VGMDAEPKEEILEHLAKHMAPGARLVVRSA  231 (276)
T ss_dssp             -S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred             cccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence            011112567899999999999999998753

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=94.39  E-value=0.13  Score=54.40  Aligned_cols=93  Identities=16%  Similarity=0.299  Sum_probs=61.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCC---CcEEEEecCCC--------------C-CcEEeccCCCCC--CCCC-ceeEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGV---EDSIGIFKKSS--------------K-PLVISGEGHRIP--FDGN-TFDFV  172 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~---~~v~gID~s~~--------------~-~l~~~~da~~LP--f~D~-SFD~V  172 (518)
                      .++|.+|||+.++.|.=+..+++...   ..|+++|.++.              . ..+...|+..+|  .+.+ .||.|
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i  233 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI  233 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence            57899999999999988877766431   34699999852              1 123456665553  2333 59999


Q ss_pred             EE----cC-ceeeccC------C----------hHHHHHHHHhcccCCcEEEEEe
Q 010086          173 FV----GG-ARLEKAS------K----------PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       173 ~s----~~-~~l~~~~------d----------p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +.    ++ +.++.=+      .          ..+.+..+.+.|||||+++-.+
T Consensus       234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST  288 (355)
T COG0144         234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST  288 (355)
T ss_pred             EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            83    32 2232111      1          1246788999999999988764

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=94.30  E-value=0.066  Score=57.18  Aligned_cols=85  Identities=11%  Similarity=0.153  Sum_probs=62.4

Q ss_pred             CCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCCC---------------CcEEeccCCCCC-CCCCceeEEEEcCce
Q 010086          117 SAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSSK---------------PLVISGEGHRIP-FDGNTFDFVFVGGAR  178 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~~---------------~l~~~~da~~LP-f~D~SFD~V~s~~~~  178 (518)
                      +-++||+-||+|..+..+...  |...|+++|+++..               ..+.++|+..+- -....||+|+.--  
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP--  122 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP--  122 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence            358999999999998666654  67799999998521               124456665442 1246799998744  


Q ss_pred             eeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          179 LEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +   -.|..++..+.+.+++||++.++.
T Consensus       123 f---Gs~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       123 F---GTPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence            3   246679999999999999999974

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=94.11  E-value=0.14  Score=51.62  Aligned_cols=70  Identities=17%  Similarity=0.082  Sum_probs=50.6

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCC---Cce
Q 010086          106 QDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDG---NTF  169 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D---~SF  169 (518)
                      +++++..-+.++..|||||+|+|.++..|.+.+ .+++++++++.             ...++.+|+..+..++   +.-
T Consensus        20 ~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~   98 (262)
T PF00398_consen   20 DKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQP   98 (262)
T ss_dssp             HHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSE
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCc
Confidence            333333345688999999999999999999887 89999998731             1235689999887776   455


Q ss_pred             eEEEEcC
Q 010086          170 DFVFVGG  176 (518)
Q Consensus       170 D~V~s~~  176 (518)
                      ..|+++.
T Consensus        99 ~~vv~Nl  105 (262)
T PF00398_consen   99 LLVVGNL  105 (262)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEe
Confidence            6666643

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=94.06  E-value=0.5  Score=48.79  Aligned_cols=94  Identities=14%  Similarity=0.121  Sum_probs=63.4

Q ss_pred             CCCeEEEEcCCCCHhH-HHHHhcC--CCcEEEEecCCC--------------C--CcEEeccCCCC-CCC--CCceeEEE
Q 010086          116 QSAKSLCVETQYGQDV-FALKEIG--VEDSIGIFKKSS--------------K--PLVISGEGHRI-PFD--GNTFDFVF  173 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~-~~L~~~g--~~~v~gID~s~~--------------~--~l~~~~da~~L-Pf~--D~SFD~V~  173 (518)
                      ..-+||||.||.|..+ .++.+.+  ...+.-.|.++.              .  ..+.++|+-+- .+.  +-..|+++
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i  214 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI  214 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence            3469999999999987 4555544  357788887741              0  12456665332 122  34568888


Q ss_pred             EcCceeeccCChH---HHHHHHHhcccCCcEEEEEe--cCCC
Q 010086          174 VGGARLEKASKPL---DFASEIVRTLKPEGFAVVHV--RAKD  210 (518)
Q Consensus       174 s~~~~l~~~~dp~---~~l~Ei~RVLKPGG~lvi~~--~~~~  210 (518)
                      .++. ++.++|-+   ..++-+.+.+.|||+++.+-  +|..
T Consensus       215 VsGL-~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ  255 (311)
T PF12147_consen  215 VSGL-YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ  255 (311)
T ss_pred             Eecc-hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence            8885 77777643   46888999999999999864  5543

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=93.94  E-value=0.4  Score=50.44  Aligned_cols=84  Identities=15%  Similarity=0.107  Sum_probs=57.9

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC---------C-CC-cEEeccC-CCCCCCCCceeEEEEcCceeeccC
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS---------S-KP-LVISGEG-HRIPFDGNTFDFVFVGGARLEKAS  183 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~---------~-~~-l~~~~da-~~LPf~D~SFD~V~s~~~~l~~~~  183 (518)
                      .-..++|+|.|.|..+..+.. .+.++-+|+...         . ++ ..+-+|. .+.|=.    |+|+..-. +||+.
T Consensus       177 ~v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~----daI~mkWi-Lhdwt  250 (342)
T KOG3178|consen  177 GVNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKG----DAIWMKWI-LHDWT  250 (342)
T ss_pred             cCceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCc----CeEEEEee-cccCC
Confidence            347899999999999977665 344566666431         1 11 1123332 223433    49999887 99998


Q ss_pred             ChH--HHHHHHHhcccCCcEEEEE
Q 010086          184 KPL--DFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       184 dp~--~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |-+  ++++-+..-|+|||.+++.
T Consensus       251 DedcvkiLknC~~sL~~~GkIiv~  274 (342)
T KOG3178|consen  251 DEDCVKILKNCKKSLPPGGKIIVV  274 (342)
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEE
Confidence            764  7899999999999998775

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=93.72  E-value=0.2  Score=52.85  Aligned_cols=87  Identities=14%  Similarity=0.111  Sum_probs=69.9

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC----------------CcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK----------------PLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~----------------~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      ..+|..|||+=||-|.++..++..|...|+++|+++..                ...++||+...+..-+.||-|++.. 
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~-  264 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL-  264 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC-
Confidence            46799999999999999998888885569999998621                2246899999887779999999976 


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                       ..   .-.+++..+.+.+|+||++-..
T Consensus       265 -p~---~a~~fl~~A~~~~k~~g~iHyy  288 (341)
T COG2520         265 -PK---SAHEFLPLALELLKDGGIIHYY  288 (341)
T ss_pred             -CC---cchhhHHHHHHHhhcCcEEEEE
Confidence             22   2346788889999999998765

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=93.66  E-value=0.39  Score=46.97  Aligned_cols=94  Identities=13%  Similarity=0.063  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCCCc-----------EEeccCCCCCCCCCceeEEEEcCceeeccCC
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPL-----------VISGEGHRIPFDGNTFDFVFVGGARLEKASK  184 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~~l-----------~~~~da~~LPf~D~SFD~V~s~~~~l~~~~d  184 (518)
                      .|.+|||+|+|+|..+.+-++.|...|+..|+.+....           -+.-...++-+.+..||+++.....+.| +.
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~-~~  157 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH-TE  157 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc-hH
Confidence            57899999999999988877788778888887542100           0111112223478899999998862333 33


Q ss_pred             hHHHHHHHHhcccCCcEEEEEecCCCc
Q 010086          185 PLDFASEIVRTLKPEGFAVVHVRAKDE  211 (518)
Q Consensus       185 p~~~l~Ei~RVLKPGG~lvi~~~~~~~  211 (518)
                      -.+.+. ..+.|+-.|..++.......
T Consensus       158 a~~l~~-~~~~l~~~g~~vlvgdp~R~  183 (218)
T COG3897         158 ADRLIP-WKDRLAEAGAAVLVGDPGRA  183 (218)
T ss_pred             HHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence            345666 77888888877665444433

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=93.56  E-value=0.61  Score=45.38  Aligned_cols=98  Identities=17%  Similarity=0.134  Sum_probs=62.8

Q ss_pred             CCCCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCCCC----cEEec-cCCC------C--CCCCCceeEEEEcC
Q 010086          112 GYLSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSSKP----LVISG-EGHR------I--PFDGNTFDFVFVGG  176 (518)
Q Consensus       112 gll~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~~~----l~~~~-da~~------L--Pf~D~SFD~V~s~~  176 (518)
                      ++++|+++|||+||.+|..++-..+.  +.+-|.|||+-+..|    ..+++ |...      +  -.|+-.+|+|+|-.
T Consensus        65 ~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDM  144 (232)
T KOG4589|consen   65 RFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDM  144 (232)
T ss_pred             cccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEecc
Confidence            57899999999999999988655542  346899999865322    12222 2111      0  13678999999965


Q ss_pred             ceeeccC-----ChHH-------HHHHHHhcccCCcEEEEEecCCCc
Q 010086          177 ARLEKAS-----KPLD-------FASEIVRTLKPEGFAVVHVRAKDE  211 (518)
Q Consensus       177 ~~l~~~~-----dp~~-------~l~Ei~RVLKPGG~lvi~~~~~~~  211 (518)
                      +  ++..     |..+       ++.-..--++|+|.++.-++.++.
T Consensus       145 a--pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e  189 (232)
T KOG4589|consen  145 A--PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE  189 (232)
T ss_pred             C--CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence            3  3321     2222       223334457899999998876653

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=93.42  E-value=0.27  Score=51.99  Aligned_cols=110  Identities=18%  Similarity=0.169  Sum_probs=61.2

Q ss_pred             CeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCC----------------CCCC
Q 010086          118 AKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRI----------------PFDG  166 (518)
Q Consensus       118 ~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~L----------------Pf~D  166 (518)
                      .++||+=||.|.++..|++.. ..|+||+.++.               ...++.++++++                ...+
T Consensus       198 ~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~  276 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKS  276 (352)
T ss_dssp             TEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGC
T ss_pred             CcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhh
Confidence            389999999999999998764 79999998631               112344444332                1223


Q ss_pred             CceeEEEEcC--ceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCCC
Q 010086          167 NTFDFVFVGG--ARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSS  238 (518)
Q Consensus       167 ~SFD~V~s~~--~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~  238 (518)
                      ..+|+|+.--  +.++     ..+++.+.   ++.=++++..... +. ...+..|-+.|++.++.-+|.|-.+
T Consensus       277 ~~~d~vilDPPR~G~~-----~~~~~~~~---~~~~ivYvSCnP~-tl-aRDl~~L~~~y~~~~v~~~DmFP~T  340 (352)
T PF05958_consen  277 FKFDAVILDPPRAGLD-----EKVIELIK---KLKRIVYVSCNPA-TL-ARDLKILKEGYKLEKVQPVDMFPQT  340 (352)
T ss_dssp             TTESEEEE---TT-SC-----HHHHHHHH---HSSEEEEEES-HH-HH-HHHHHHHHCCEEEEEEEEE-SSTTS
T ss_pred             cCCCEEEEcCCCCCch-----HHHHHHHh---cCCeEEEEECCHH-HH-HHHHHHHhhcCEEEEEEEeecCCCC
Confidence            4688886521  0011     12333332   4544566655321 11 2344445578999999999986554

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=93.31  E-value=0.38  Score=47.60  Aligned_cols=84  Identities=11%  Similarity=0.023  Sum_probs=54.6

Q ss_pred             CCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC--------------C-CcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086          117 SAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS--------------K-PLVISGEGHRIPFDGNTFDFVFVGGARLE  180 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~--------------~-~l~~~~da~~LPf~D~SFD~V~s~~~~l~  180 (518)
                      +.+++|||+|.|.-..-|+- ....+++-+|....              + ..++.+.+++..-...-||+|+|..  +-
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRA--va  145 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRA--VA  145 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeeh--cc
Confidence            68999999999986644442 12245888886531              1 2345677776542212299999987  33


Q ss_pred             ccCChHHHHHHHHhcccCCcEEEEE
Q 010086          181 KASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       181 ~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .   ......=+...||+||.+++.
T Consensus       146 ~---L~~l~e~~~pllk~~g~~~~~  167 (215)
T COG0357         146 S---LNVLLELCLPLLKVGGGFLAY  167 (215)
T ss_pred             c---hHHHHHHHHHhcccCCcchhh
Confidence            3   344566678899999987543

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=93.23  E-value=0.9  Score=44.02  Aligned_cols=119  Identities=21%  Similarity=0.236  Sum_probs=76.8

Q ss_pred             ccccccCCceEEEEeCCCCCCcchh-hhhhhhCCCCCcceEEEEEcCCccchH-------hhccCCceEEEeeceeecCC
Q 010086          311 MADISFKNRYVYVDVGARSYGSSIG-SWFKKQYPKQNKTFDVYAIEADKTFHE-------EYKVKKKVKLLPYAAWVRNE  382 (518)
Q Consensus       311 ~~d~s~~~r~V~iD~GAn~~g~sv~-~~F~~~YP~~~~~f~V~afE~np~~~~-------~~~~~~~V~~~~~Av~~~~~  382 (518)
                      +..+.++|+.+++|+||+. |+ ++ .|- ..-|+.    +|||||.|+...+       +|. .+|+.++.--+   .+
T Consensus        27 ls~L~~~~g~~l~DIGaGt-Gs-i~iE~a-~~~p~~----~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~A---p~   95 (187)
T COG2242          27 LSKLRPRPGDRLWDIGAGT-GS-ITIEWA-LAGPSG----RVIAIERDEEALELIERNAARFG-VDNLEVVEGDA---PE   95 (187)
T ss_pred             HHhhCCCCCCEEEEeCCCc-cH-HHHHHH-HhCCCc----eEEEEecCHHHHHHHHHHHHHhC-CCcEEEEeccc---hH
Confidence            4456788999999999995 74 54 454 556765    8999999998543       344 78888877311   11


Q ss_pred             ceEEEecCCCCcchhhcccCCccc-cccccCCCCCCCCCcceeecccHHHHHhhcCCCCCeEEEEeeccchhhhhHHHHH
Q 010086          383 TLSFQINHDPDKEVVVKGRGMGRI-QPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLF  461 (518)
Q Consensus       383 tl~f~~~~~~~~~~~~~~~g~~~i-~p~~~~~~~~~~g~~~~v~~vd~s~wl~~~v~~~D~VVlKMDIEGaE~~vL~~l~  461 (518)
                      .+.                   .+ .|..-     |-|-...++  .+.++..+.+++..-+|+-.=-...++..++.|-
T Consensus        96 ~L~-------------------~~~~~dai-----FIGGg~~i~--~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~  149 (187)
T COG2242          96 ALP-------------------DLPSPDAI-----FIGGGGNIE--EILEAAWERLKPGGRLVANAITLETLAKALEALE  149 (187)
T ss_pred             hhc-------------------CCCCCCEE-----EECCCCCHH--HHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHH
Confidence            110                   00 01000     111111122  4677777888888888888777788999999998


Q ss_pred             hcCCc
Q 010086          462 ETGAI  466 (518)
Q Consensus       462 ~~g~i  466 (518)
                      +.|.-
T Consensus       150 ~~g~~  154 (187)
T COG2242         150 QLGGR  154 (187)
T ss_pred             HcCCc
Confidence            87765

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=93.18  E-value=0.27  Score=50.23  Aligned_cols=90  Identities=16%  Similarity=0.097  Sum_probs=66.4

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHh-cC-CCcEEEEecCCC----------------CCcEEeccCCCCCCC--CCceeEE
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKE-IG-VEDSIGIFKKSS----------------KPLVISGEGHRIPFD--GNTFDFV  172 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~-~g-~~~v~gID~s~~----------------~~l~~~~da~~LPf~--D~SFD~V  172 (518)
                      -++||++||+-|+|+|.++.++++ .+ -++++..|....                ...+..-|....-|.  +..+|+|
T Consensus       102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaV  181 (314)
T KOG2915|consen  102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAV  181 (314)
T ss_pred             cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceE
Confidence            478999999999999999988876 22 368888887531                112344566655553  6788888


Q ss_pred             EEcCceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          173 FVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       173 ~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      |--      ++.|..++-.+..+||.+|.-++.++.
T Consensus       182 FLD------lPaPw~AiPha~~~lk~~g~r~csFSP  211 (314)
T KOG2915|consen  182 FLD------LPAPWEAIPHAAKILKDEGGRLCSFSP  211 (314)
T ss_pred             EEc------CCChhhhhhhhHHHhhhcCceEEeccH
Confidence            763      367999999999999999976666543

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=93.01  E-value=0.41  Score=55.27  Aligned_cols=110  Identities=7%  Similarity=-0.020  Sum_probs=67.4

Q ss_pred             hHHHHHHHHHHc-CCCCCCCeEEEEcCCCCHhHHHHHhc------C----------------------------------
Q 010086          100 FYSSVFQDLISE-GYLSQSAKSLCVETQYGQDVFALKEI------G----------------------------------  138 (518)
Q Consensus       100 ~~~~l~~~L~~~-gll~~~~rvLDVGcGtG~~~~~L~~~------g----------------------------------  138 (518)
                      +-+.+...++.. +..+++..++|-.||+|.++...+..      |                                  
T Consensus       173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~  252 (702)
T PRK11783        173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL  252 (702)
T ss_pred             CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            334444444443 33366889999999999987332210      0                                  


Q ss_pred             ---CCcEEEEecCCC----------------CCcEEeccCCCCCCC--CCceeEEEEcCceeeccCC---hHHH---HHH
Q 010086          139 ---VEDSIGIFKKSS----------------KPLVISGEGHRIPFD--GNTFDFVFVGGARLEKASK---PLDF---ASE  191 (518)
Q Consensus       139 ---~~~v~gID~s~~----------------~~l~~~~da~~LPf~--D~SFD~V~s~~~~l~~~~d---p~~~---l~E  191 (518)
                         ...++|+|+++.                ...+.++|..+++.+  .++||+|+++-=+...+.+   ...+   +.+
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~  332 (702)
T PRK11783        253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGR  332 (702)
T ss_pred             cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHH
Confidence               125899999741                123568898888665  3689999998521233322   2233   344


Q ss_pred             HHhcccCCcEEEEEecCC
Q 010086          192 IVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       192 i~RVLKPGG~lvi~~~~~  209 (518)
                      ..|...||+.+++.++..
T Consensus       333 ~lk~~~~g~~~~llt~~~  350 (702)
T PRK11783        333 RLKQQFGGWNAALFSSSP  350 (702)
T ss_pred             HHHHhCCCCeEEEEeCCH
Confidence            555555999998877644

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=92.75  E-value=0.66  Score=49.80  Aligned_cols=27  Identities=22%  Similarity=0.158  Sum_probs=22.1

Q ss_pred             ccCCCCCCCCCceeEEEEcCceeeccCC
Q 010086          157 GEGHRIPFDGNTFDFVFVGGARLEKASK  184 (518)
Q Consensus       157 ~da~~LPf~D~SFD~V~s~~~~l~~~~d  184 (518)
                      |....--||++|.++++|+.+ +||++.
T Consensus       151 GSFY~RLfP~~Slh~~~Ss~s-lHWLS~  177 (386)
T PLN02668        151 GSFYRRLFPARSIDVFHSAFS-LHWLSQ  177 (386)
T ss_pred             ccccccccCCCceEEEEeecc-ceeccc
Confidence            445555699999999999998 999874

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=92.16  E-value=1.7  Score=48.33  Aligned_cols=34  Identities=12%  Similarity=-0.194  Sum_probs=24.6

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-----C----CCcEEEEecCC
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-----G----VEDSIGIFKKS  149 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-----g----~~~v~gID~s~  149 (518)
                      ...+|||.|||+|.+..++.+.     +    ..+++|+|+++
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~   73 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDK   73 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhH
Confidence            4569999999999988655431     1    14688999863

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=91.55  E-value=0.051  Score=46.61  Aligned_cols=83  Identities=18%  Similarity=0.234  Sum_probs=35.6

Q ss_pred             EEEcCCCCHhHHHHHh----cCCCcEEEEecCC---CC------------CcEEeccCCCC--CCCCCceeEEEEcCcee
Q 010086          121 LCVETQYGQDVFALKE----IGVEDSIGIFKKS---SK------------PLVISGEGHRI--PFDGNTFDFVFVGGARL  179 (518)
Q Consensus       121 LDVGcGtG~~~~~L~~----~g~~~v~gID~s~---~~------------~l~~~~da~~L--Pf~D~SFD~V~s~~~~l  179 (518)
                      |+||+..|..+..+.+    .+..+++++|..+   ..            ..+++++..+.  .+++++||+++.-..  
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~--   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD--   78 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence            5789888887655543    2224789999875   10            11234544322  234789999998652  


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEE
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |..+.....+..+.+.|+|||++++.
T Consensus        79 H~~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   79 HSYEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             --HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            33333446788899999999999874

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=91.16  E-value=0.25  Score=51.23  Aligned_cols=47  Identities=11%  Similarity=-0.017  Sum_probs=35.4

Q ss_pred             HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcC--CCcEEEEecCC
Q 010086          103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIG--VEDSIGIFKKS  149 (518)
Q Consensus       103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g--~~~v~gID~s~  149 (518)
                      -+++++++.-.+.++..+||.+||.|..+..+.+..  ...|+|+|.++
T Consensus         6 Vll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~   54 (296)
T PRK00050          6 VLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDP   54 (296)
T ss_pred             ccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCH
Confidence            344455544445788899999999999998877653  36899999874

>PRK13699 putative methylase; Provisional

Probab=91.16  E-value=0.13  Score=51.03  Aligned_cols=42  Identities=21%  Similarity=0.120  Sum_probs=28.1

Q ss_pred             cccccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccch
Q 010086          312 ADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFH  361 (518)
Q Consensus       312 ~d~s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~  361 (518)
                      +..+..++++++|.=+|+ |++.  .-....-   +  +.+++|-||...
T Consensus       157 i~~~s~~g~~vlDpf~Gs-gtt~--~aa~~~~---r--~~~g~e~~~~y~  198 (227)
T PRK13699        157 IESFTHPNAIVLDPFAGS-GSTC--VAALQSG---R--RYIGIELLEQYH  198 (227)
T ss_pred             HHHhCCCCCEEEeCCCCC-CHHH--HHHHHcC---C--CEEEEecCHHHH
Confidence            345667899999988775 7644  1122222   2  688999999754

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=90.60  E-value=0.96  Score=47.20  Aligned_cols=37  Identities=24%  Similarity=0.417  Sum_probs=29.4

Q ss_pred             CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEE
Q 010086          167 NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVV  204 (518)
Q Consensus       167 ~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi  204 (518)
                      ++||+|+...- ++-..|--..+.-|..+|||||+.+-
T Consensus       258 ~~~d~VvTcfF-IDTa~NileYi~tI~~iLk~GGvWiN  294 (369)
T KOG2798|consen  258 GSYDVVVTCFF-IDTAHNILEYIDTIYKILKPGGVWIN  294 (369)
T ss_pred             CccceEEEEEE-eechHHHHHHHHHHHHhccCCcEEEe
Confidence            46999997763 56556677889999999999998654

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.55  E-value=0.64  Score=46.54  Aligned_cols=94  Identities=18%  Similarity=0.195  Sum_probs=64.0

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc------CC----CcEEEEecCCCCCc----EEeccCCCC--------CCCCCceeEEE
Q 010086          116 QSAKSLCVETQYGQDVFALKEI------GV----EDSIGIFKKSSKPL----VISGEGHRI--------PFDGNTFDFVF  173 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~------g~----~~v~gID~s~~~~l----~~~~da~~L--------Pf~D~SFD~V~  173 (518)
                      .-.|++|+.+.+|..++.|.+.      +.    ..+++||+-+-.|.    -+++|..+.        -|..+--|+|+
T Consensus        41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVv  120 (294)
T KOG1099|consen   41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVV  120 (294)
T ss_pred             hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEE
Confidence            3468999999999988777541      11    13999999764332    246766553        27788999999


Q ss_pred             EcCc----eeeccCCh------HHHHHHHHhcccCCcEEEEEecCC
Q 010086          174 VGGA----RLEKASKP------LDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       174 s~~~----~l~~~~dp------~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      |-++    .+|.+..-      ..+++=..+||||||.++--+-++
T Consensus       121 cDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg  166 (294)
T KOG1099|consen  121 CDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG  166 (294)
T ss_pred             eCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence            9874    35554321      135677789999999998864333

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=89.97  E-value=0.55  Score=49.39  Aligned_cols=67  Identities=15%  Similarity=-0.016  Sum_probs=35.9

Q ss_pred             CCCeEEEEcCCCCHhHHHHH--------hc----C-----CCcEEEEecCC-------------------CCCcE---Ee
Q 010086          116 QSAKSLCVETQYGQDVFALK--------EI----G-----VEDSIGIFKKS-------------------SKPLV---IS  156 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~--------~~----g-----~~~v~gID~s~-------------------~~~l~---~~  156 (518)
                      ..-+|+|+||.+|..+..+-        +.    +     .-.|+--|+-.                   .+..+   +-
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp   95 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP   95 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred             CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence            34589999999998774322        11    1     01455555421                   02222   34


Q ss_pred             ccCCCCCCCCCceeEEEEcCceeeccC
Q 010086          157 GEGHRIPFDGNTFDFVFVGGARLEKAS  183 (518)
Q Consensus       157 ~da~~LPf~D~SFD~V~s~~~~l~~~~  183 (518)
                      +....--||++|.|+++|+.+ |||++
T Consensus        96 gSFy~rLfP~~Svh~~~Ss~a-lHWLS  121 (334)
T PF03492_consen   96 GSFYGRLFPSNSVHFGHSSYA-LHWLS  121 (334)
T ss_dssp             S-TTS--S-TT-EEEEEEES--TTB-S
T ss_pred             chhhhccCCCCceEEEEEech-hhhcc
Confidence            677777799999999999998 99975

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PRK11524 putative methyltransferase; Provisional

Probab=88.95  E-value=0.29  Score=50.09  Aligned_cols=54  Identities=17%  Similarity=0.239  Sum_probs=36.1

Q ss_pred             EEeccCCCC--CCCCCceeEEEEcCceee--c---c----------CChHHHHHHHHhcccCCcEEEEEec
Q 010086          154 VISGEGHRI--PFDGNTFDFVFVGGARLE--K---A----------SKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       154 ~~~~da~~L--Pf~D~SFD~V~s~~~~l~--~---~----------~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++.+|+.+.  .+++++||+|++.-=+..  .   .          .-....+.|+.|+|||||.+++...
T Consensus        11 i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~   81 (284)
T PRK11524         11 IIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS   81 (284)
T ss_pred             EEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            456666653  477899999998531010  0   0          0013688999999999999988654

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=88.52  E-value=1.4  Score=46.52  Aligned_cols=90  Identities=18%  Similarity=0.223  Sum_probs=57.6

Q ss_pred             CCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCCC-cE--------EeccCCC------CCCCC-CceeEEEE
Q 010086          113 YLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSKP-LV--------ISGEGHR------IPFDG-NTFDFVFV  174 (518)
Q Consensus       113 ll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~~-l~--------~~~da~~------LPf~D-~SFD~V~s  174 (518)
                      ..+++++|+-+|||+ |.++.++++ .|..+|+.+|.++..- +.        .....++      +.... .-||+|+-
T Consensus       165 ~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie  244 (350)
T COG1063         165 AVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIE  244 (350)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEE
Confidence            345556999999999 888755554 6778999999875311 11        1111110      01111 26999997


Q ss_pred             cCceeeccCChHHHHHHHHhcccCCcEEEEE-ecCC
Q 010086          175 GGARLEKASKPLDFASEIVRTLKPEGFAVVH-VRAK  209 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~-~~~~  209 (518)
                      ...       -..++..+.+.+||||.+++. +...
T Consensus       245 ~~G-------~~~~~~~ai~~~r~gG~v~~vGv~~~  273 (350)
T COG1063         245 AVG-------SPPALDQALEALRPGGTVVVVGVYGG  273 (350)
T ss_pred             CCC-------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence            653       124788999999999998776 4433

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=88.48  E-value=4.8  Score=41.63  Aligned_cols=85  Identities=11%  Similarity=0.081  Sum_probs=52.1

Q ss_pred             CCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEec---cCCCCCCCCCceeEEEEcCcee
Q 010086          114 LSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISG---EGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       114 l~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~---da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      ..++.+||-.|+|. |..+..+++ .|...|+++|.++..         ..++..   +..++.-..+.||+|+....  
T Consensus       167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--  244 (343)
T PRK09880        167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--  244 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC--
Confidence            34789999999876 666555544 575578899876421         011111   11111111234898887643  


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEE
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                          . ...+.+..+.|||||.+++.
T Consensus       245 ----~-~~~~~~~~~~l~~~G~iv~~  265 (343)
T PRK09880        245 ----H-PSSINTCLEVTRAKGVMVQV  265 (343)
T ss_pred             ----C-HHHHHHHHHHhhcCCEEEEE
Confidence                1 24678889999999998775

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=88.29  E-value=0.58  Score=48.28  Aligned_cols=93  Identities=15%  Similarity=0.276  Sum_probs=57.3

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------------CCcEEeccCCC-CC-C-CCCceeEEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------------KPLVISGEGHR-IP-F-DGNTFDFVFV  174 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------------~~l~~~~da~~-LP-f-~D~SFD~V~s  174 (518)
                      ..+.+|||+=|=||.++.+....|..+|++||.|..                 ...++++|+-+ +. . ..+.||+|++
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            357899999999999987766667668999999831                 11234555432 11 1 2468999997


Q ss_pred             cCceeeccC-----ChHHHHHHHHhcccCCcEEEEEec
Q 010086          175 GGARLEKAS-----KPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       175 ~~~~l~~~~-----dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      --=+|-.-.     +-.+.+..+.++|+|||.+++.+.
T Consensus       202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc  239 (286)
T PF10672_consen  202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC  239 (286)
T ss_dssp             --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            531132211     123467788999999999877653

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=88.03  E-value=4.7  Score=39.33  Aligned_cols=52  Identities=17%  Similarity=0.167  Sum_probs=33.7

Q ss_pred             cHHHHHhhcCCCCCeEEEEee-ccchhhhhHHHHHhcCCcccccEEEEEeecc
Q 010086          428 DFADWLKNTVTDKDFVVMKMD-VEGTEFDLIPRLFETGAICLIDEIFLECHYN  479 (518)
Q Consensus       428 d~s~wl~~~v~~~D~VVlKMD-IEGaE~~vL~~l~~~g~i~~IDeLfvE~H~~  479 (518)
                      |+.+++...-..-|.|++=== -+|...++++.|.+.|.+..-.-++||++..
T Consensus       110 D~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        110 NALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE  162 (199)
T ss_pred             hHHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence            445555332123465554322 4677888888888888888877889998764

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=87.96  E-value=0.94  Score=38.53  Aligned_cols=54  Identities=13%  Similarity=0.214  Sum_probs=38.4

Q ss_pred             CceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh----h---ccCCceEEEeece
Q 010086          318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE----Y---KVKKKVKLLPYAA  377 (518)
Q Consensus       318 ~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~----~---~~~~~V~~~~~Av  377 (518)
                      |+.-++|+|++ .|. ++-++.+++|.    .+|+++|.+|...+.    .   ...++|+++...+
T Consensus         1 p~~~vLDlGcG-~G~-~~~~l~~~~~~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~   61 (112)
T PF12847_consen    1 PGGRVLDLGCG-TGR-LSIALARLFPG----ARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA   61 (112)
T ss_dssp             TTCEEEEETTT-TSH-HHHHHHHHHTT----SEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred             CCCEEEEEcCc-CCH-HHHHHHhcCCC----CEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence            34556999999 485 44677777774    489999999986442    2   2457888887533

...

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=87.81  E-value=2.4  Score=43.01  Aligned_cols=90  Identities=19%  Similarity=0.233  Sum_probs=56.2

Q ss_pred             HHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC--------C-cEEeccCCC-----CCCCCCceeE
Q 010086          108 LISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK--------P-LVISGEGHR-----IPFDGNTFDF  171 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~--------~-l~~~~da~~-----LPf~D~SFD~  171 (518)
                      +...+.++++.++|..|+|. |..+..+++ .| .+|++++.++..        . .++......     ...+...+|.
T Consensus       157 l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~  235 (338)
T cd08254         157 VVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDV  235 (338)
T ss_pred             HHhccCCCCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceE
Confidence            44455678899999988764 666655554 56 568888765310        0 011111000     0124567999


Q ss_pred             EEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |+....       ....+.++.|.|+|||.++..
T Consensus       236 vid~~g-------~~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         236 IFDFVG-------TQPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             EEECCC-------CHHHHHHHHHHhhcCCEEEEE
Confidence            987542       134688999999999998875

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=87.20  E-value=3.1  Score=44.02  Aligned_cols=96  Identities=14%  Similarity=0.081  Sum_probs=59.1

Q ss_pred             HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC--------C-cEEeccCC-----CC-CC-CCCceeE
Q 010086          110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK--------P-LVISGEGH-----RI-PF-DGNTFDF  171 (518)
Q Consensus       110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~--------~-l~~~~da~-----~L-Pf-~D~SFD~  171 (518)
                      ..+.+.++.+||.+|||+ |..+..+++ .|...++++|.++..        . .++.....     .+ .+ ++..+|+
T Consensus       178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~  257 (386)
T cd08283         178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDV  257 (386)
T ss_pred             hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCE
Confidence            344577899999999988 777765554 564469999865310        1 11111111     01 12 2336899


Q ss_pred             EEEcCce--------------eeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          172 VFVGGAR--------------LEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       172 V~s~~~~--------------l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |+.....              |+-..++...+.++.|.|+|||.+++.
T Consensus       258 vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  305 (386)
T cd08283         258 CIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII  305 (386)
T ss_pred             EEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence            9875320              011134556889999999999998776

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=86.83  E-value=1.2  Score=39.49  Aligned_cols=32  Identities=19%  Similarity=0.132  Sum_probs=27.1

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecC
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKK  148 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s  148 (518)
                      +...-+|||||+|.++..|...| ..-.|+|.-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EG-y~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEG-YPGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCC-CCccccccc
Confidence            45679999999999999999888 467889974

; GO: 0008168 methyltransferase activity

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=86.66  E-value=4.3  Score=41.44  Aligned_cols=131  Identities=20%  Similarity=0.409  Sum_probs=77.7

Q ss_pred             EEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhccCCceEEEeeceeecCCceEEEecCCCCcchhhcc
Q 010086          321 VYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKVKKKVKLLPYAAWVRNETLSFQINHDPDKEVVVKG  400 (518)
Q Consensus       321 V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~~~~~V~~~~~Av~~~~~tl~f~~~~~~~~~~~~~~  400 (518)
                      -++|+|||. |. ++.-+.+.|.      +|||=|.++....+++. +|.++++..-|...+ ..|              
T Consensus        97 ~lLDlGAGd-G~-VT~~l~~~f~------~v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~-~~f--------------  152 (265)
T PF05219_consen   97 SLLDLGAGD-GE-VTERLAPLFK------EVYATEASPPMRWRLSK-KGFTVLDIDDWQQTD-FKF--------------  152 (265)
T ss_pred             ceEEecCCC-cH-HHHHHHhhcc------eEEeecCCHHHHHHHHh-CCCeEEehhhhhccC-Cce--------------
Confidence            478999994 85 7667776666      79999999987666654 667777765554211 011              


Q ss_pred             cCCccccccccCCCCCCCCCcceeecccH----------HHHHhhcCCCCCeEEEEeeccchhhhhHHHHHhcCCccccc
Q 010086          401 RGMGRIQPVQSLSDGGFDGEVDRIQGFDF----------ADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLID  470 (518)
Q Consensus       401 ~g~~~i~p~~~~~~~~~~g~~~~v~~vd~----------s~wl~~~v~~~D~VVlKMDIEGaE~~vL~~l~~~g~i~~ID  470 (518)
                                           .-|..+|+          .+=|+..+++.=.+|+=+        |||-           
T Consensus       153 ---------------------DvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAv--------VlP~-----------  192 (265)
T PF05219_consen  153 ---------------------DVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAV--------VLPF-----------  192 (265)
T ss_pred             ---------------------EEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEE--------Eecc-----------
Confidence                                 11223333          222222222222222222        1111           


Q ss_pred             EEEEEeecccccccCCCCCCCcccccHHHHHH-HHHHHhhCCeeeeec
Q 010086          471 EIFLECHYNRWQRCCPGQRSPKYKKTYEQCLE-LFTSLRQNGVLVHQW  517 (518)
Q Consensus       471 eLfvE~H~~~~~~~~~g~~~~~~~~~~~~cl~-L~~~LR~~Gv~vHqW  517 (518)
                      .-|||.+..+|.+  |-+.-+-.+.|++|..+ |...|.-.||.|-.|
T Consensus       193 ~pyVE~~~g~~~~--P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~  238 (265)
T PF05219_consen  193 RPYVEFGGGKSNR--PSELLPVKGATFEEQVSSLVNVFEPAGFEVERW  238 (265)
T ss_pred             cccEEcCCCCCCC--chhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            3488998744333  33334455688988877 889999999998777

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=86.25  E-value=3.9  Score=44.71  Aligned_cols=117  Identities=15%  Similarity=0.175  Sum_probs=73.2

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCC---CCceeEEEEc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFD---GNTFDFVFVG  175 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~---D~SFD~V~s~  175 (518)
                      ..++.++||+=||.|.++..|++. +.+|+|+++++.               ...+..+++++..-.   ...||.|+..
T Consensus       291 ~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD  369 (432)
T COG2265         291 LAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD  369 (432)
T ss_pred             hcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC
Confidence            356789999999999999999855 489999999842               123456777766432   3578988864


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhc-cCccEEEEeccCCCCC
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLF-NSCKLVKSRDIDGIDS  237 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf-~~~~~v~~~~v~~~~~  237 (518)
                      -=  .-=. ...+++++.+ ++|-.++++.....  +-...+..|- ..|++.++.-+|.|=+
T Consensus       370 PP--R~G~-~~~~lk~l~~-~~p~~IvYVSCNP~--TlaRDl~~L~~~gy~i~~v~~~DmFP~  426 (432)
T COG2265         370 PP--RAGA-DREVLKQLAK-LKPKRIVYVSCNPA--TLARDLAILASTGYEIERVQPFDMFPH  426 (432)
T ss_pred             CC--CCCC-CHHHHHHHHh-cCCCcEEEEeCCHH--HHHHHHHHHHhCCeEEEEEEEeccCCC
Confidence            20  0000 1245555554 67888888876422  1112333332 3466888887776543

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=86.24  E-value=1  Score=50.16  Aligned_cols=90  Identities=14%  Similarity=0.169  Sum_probs=56.1

Q ss_pred             CCCCCeEEEEcCCC-CHhHHH-HHhcCCCcEEEEecCCCC--------CcEEeccC-C----------CC----------
Q 010086          114 LSQSAKSLCVETQY-GQDVFA-LKEIGVEDSIGIFKKSSK--------PLVISGEG-H----------RI----------  162 (518)
Q Consensus       114 l~~~~rvLDVGcGt-G~~~~~-L~~~g~~~v~gID~s~~~--------~l~~~~da-~----------~L----------  162 (518)
                      ..++++|+-+|||. |..+.. ++..| ..|+++|.++..        ..++.-+. +          ++          
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~  240 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA  240 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence            35789999999998 766644 44578 489999987421        11111111 0          00          


Q ss_pred             CCCC--CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          163 PFDG--NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       163 Pf~D--~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .|.+  ..+|+|+.... ...-..|....+|+.+.+||||+++..
T Consensus       241 ~~~~~~~gaDVVIetag-~pg~~aP~lit~~~v~~mkpGgvIVdv  284 (509)
T PRK09424        241 LFAEQAKEVDIIITTAL-IPGKPAPKLITAEMVASMKPGSVIVDL  284 (509)
T ss_pred             HHHhccCCCCEEEECCC-CCcccCcchHHHHHHHhcCCCCEEEEE
Confidence            0111  36999998764 322223534459999999999997765

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=86.21  E-value=4.6  Score=39.30  Aligned_cols=90  Identities=9%  Similarity=0.026  Sum_probs=54.5

Q ss_pred             CCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086          117 SAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARLE  180 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~  180 (518)
                      ..-+|+||||+|-.+..|++.  +.....++|+++.              ....++.|... -+..+++|+++.+--+.-
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNPPYVp  122 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNPPYVP  122 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-hhccCCccEEEECCCcCc
Confidence            467999999999999888763  3457888999852              11234443221 122378887776542010


Q ss_pred             c----c------------CC----hHHHHHHHHhcccCCcEEEEEec
Q 010086          181 K----A------------SK----PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       181 ~----~------------~d----p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      -    +            .+    -.+++..+--+|-|.|++++...
T Consensus       123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~  169 (209)
T KOG3191|consen  123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL  169 (209)
T ss_pred             CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence            0    0            01    12345556667789999888753

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=85.82  E-value=3.1  Score=42.15  Aligned_cols=91  Identities=19%  Similarity=0.205  Sum_probs=60.6

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCCC-----------CcE--EeccCCCCCC----CCCceeEEE
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSSK-----------PLV--ISGEGHRIPF----DGNTFDFVF  173 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~~-----------~l~--~~~da~~LPf----~D~SFD~V~  173 (518)
                      .++||.|||=+|+++|..+....+. | ..-|++++.|+..           +.+  +..|+.. |.    -=..+|+||
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArh-P~KYRmlVgmVDvIF  231 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARH-PAKYRMLVGMVDVIF  231 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCC-chheeeeeeeEEEEe
Confidence            5799999999999999988777663 3 3478999988531           111  2334432 21    234789999


Q ss_pred             EcCceeeccCChHH-HHHHHHhcccCCcEEEEEecC
Q 010086          174 VGGARLEKASKPLD-FASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       174 s~~~~l~~~~dp~~-~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +--+   + +|..+ ++--+.--||+||.+++.+-+
T Consensus       232 aDva---q-pdq~RivaLNA~~FLk~gGhfvisika  263 (317)
T KOG1596|consen  232 ADVA---Q-PDQARIVALNAQYFLKNGGHFVISIKA  263 (317)
T ss_pred             ccCC---C-chhhhhhhhhhhhhhccCCeEEEEEec
Confidence            8542   2 22222 345677789999999998743

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=85.55  E-value=0.78  Score=47.11  Aligned_cols=93  Identities=18%  Similarity=0.283  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC---------------CCcEEeccCCCC-C-CCCCceeEEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS---------------KPLVISGEGHRI-P-FDGNTFDFVFV  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~---------------~~l~~~~da~~L-P-f~D~SFD~V~s  174 (518)
                      ..++.+|||++++.|.-+..+++.  +-+.+++.|++..               ...+...|+..+ | .....||.|+.
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv  162 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV  162 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence            568899999999999988777763  2469999998742               111233565554 2 23446999995


Q ss_pred             ----cC-ceeeccCC----------------hHHHHHHHHhcc----cCCcEEEEEe
Q 010086          175 ----GG-ARLEKASK----------------PLDFASEIVRTL----KPEGFAVVHV  206 (518)
Q Consensus       175 ----~~-~~l~~~~d----------------p~~~l~Ei~RVL----KPGG~lvi~~  206 (518)
                          ++ ..+..-++                ..+.+..+.+.|    ||||+++-.+
T Consensus       163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT  219 (283)
T PF01189_consen  163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST  219 (283)
T ss_dssp             ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred             CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence                22 11222111                124678889999    9999987764

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.55  E-value=2  Score=45.11  Aligned_cols=90  Identities=11%  Similarity=0.056  Sum_probs=57.8

Q ss_pred             HcCCCCCCCeEEEEcCCC-CHhHHHHH-hcCCCcEEEEecCCCCC--------c-EEe-ccC---C------CCCCCCCc
Q 010086          110 SEGYLSQSAKSLCVETQY-GQDVFALK-EIGVEDSIGIFKKSSKP--------L-VIS-GEG---H------RIPFDGNT  168 (518)
Q Consensus       110 ~~gll~~~~rvLDVGcGt-G~~~~~L~-~~g~~~v~gID~s~~~~--------l-~~~-~da---~------~LPf~D~S  168 (518)
                      ..+-+++|++||-+|+|+ |..+...+ ..|..+|+.+|+++..-        . +.+ ...   .      +--+.+..
T Consensus       163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~  242 (354)
T KOG0024|consen  163 RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQ  242 (354)
T ss_pred             hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccC
Confidence            345689999999999999 76664444 36888999999875210        0 000 000   0      00133455


Q ss_pred             eeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          169 FDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ||++|.... ++      ..++-..-.||+||.+++.-
T Consensus       243 ~d~~~dCsG-~~------~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  243 PDVTFDCSG-AE------VTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             CCeEEEccC-ch------HHHHHHHHHhccCCEEEEec
Confidence            999997664 33      34566678999999966653

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=85.21  E-value=2.8  Score=44.68  Aligned_cols=91  Identities=21%  Similarity=0.274  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC--------------------CC--cEEeccCCCC-CCCCCce
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS--------------------KP--LVISGEGHRI-PFDGNTF  169 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~--------------------~~--l~~~~da~~L-Pf~D~SF  169 (518)
                      ++...++|-+|.|.|..+..|.+.+ +.+++-+|+.+.                    .+  .++..|+.+. -=..+.|
T Consensus       287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f  366 (508)
T COG4262         287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF  366 (508)
T ss_pred             ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence            3455789999999999998887764 789999998741                    01  1234444332 1234589


Q ss_pred             eEEEEcCceeeccCCh-------HHHHHHHHhcccCCcEEEEEec
Q 010086          170 DFVFVGGARLEKASKP-------LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       170 D~V~s~~~~l~~~~dp-------~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      |+|+...   ..-.+|       ..+..-..|-|+++|.++++.+
T Consensus       367 D~vIVDl---~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag  408 (508)
T COG4262         367 DVVIVDL---PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG  408 (508)
T ss_pred             cEEEEeC---CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence            9988743   222223       2467778899999999999864

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=85.05  E-value=3.5  Score=42.80  Aligned_cols=88  Identities=13%  Similarity=0.018  Sum_probs=52.8

Q ss_pred             CCCCCeEEEEcCCC-CHhHHHH-Hh-cCCCcEEEEecCCCCCcE-EeccC-CCC-CCCCC-ceeEEEEcCceeeccCChH
Q 010086          114 LSQSAKSLCVETQY-GQDVFAL-KE-IGVEDSIGIFKKSSKPLV-ISGEG-HRI-PFDGN-TFDFVFVGGARLEKASKPL  186 (518)
Q Consensus       114 l~~~~rvLDVGcGt-G~~~~~L-~~-~g~~~v~gID~s~~~~l~-~~~da-~~L-Pf~D~-SFD~V~s~~~~l~~~~dp~  186 (518)
                      ++++++||-+|||+ |..+..+ +. .|..+|+++|.++..... ...+. ..+ ++.++ .+|+|+.... -.  . -.
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G-~~--~-~~  236 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVG-GR--G-SQ  236 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCC-CC--c-cH
Confidence            57899999999987 6655443 43 354689999976532111 11111 001 12222 4898886542 10  0 12


Q ss_pred             HHHHHHHhcccCCcEEEEE
Q 010086          187 DFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       187 ~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ..+.+..+.|||||++++.
T Consensus       237 ~~~~~~~~~l~~~G~iv~~  255 (341)
T cd08237         237 SAINQIIDYIRPQGTIGLM  255 (341)
T ss_pred             HHHHHHHHhCcCCcEEEEE
Confidence            4688899999999998764

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=84.20  E-value=0.92  Score=45.50  Aligned_cols=66  Identities=21%  Similarity=0.380  Sum_probs=38.5

Q ss_pred             CCCC--CeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------C---------CcEEeccCCC-CCCCC
Q 010086          114 LSQS--AKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------K---------PLVISGEGHR-IPFDG  166 (518)
Q Consensus       114 l~~~--~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~---------~l~~~~da~~-LPf~D  166 (518)
                      ++++  .+|||.=+|-|..+..++..| .+|++++.|+.               +         +.++.+|..+ |+.++
T Consensus        71 lk~~~~~~VLDaTaGLG~Da~vlA~~G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~  149 (234)
T PF04445_consen   71 LKPGMRPSVLDATAGLGRDAFVLASLG-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPD  149 (234)
T ss_dssp             -BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHS
T ss_pred             CCCCCCCEEEECCCcchHHHHHHHccC-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcC
Confidence            4555  389999999999998888888 58999998741               1         1245667655 57779


Q ss_pred             CceeEEEEcCceeec
Q 010086          167 NTFDFVFVGGARLEK  181 (518)
Q Consensus       167 ~SFD~V~s~~~~l~~  181 (518)
                      ++||+|+.--. |.+
T Consensus       150 ~s~DVVY~DPM-Fp~  163 (234)
T PF04445_consen  150 NSFDVVYFDPM-FPE  163 (234)
T ss_dssp             S--SEEEE--S----
T ss_pred             CCCCEEEECCC-CCC
Confidence            99999998765 655

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=83.95  E-value=1.1  Score=40.07  Aligned_cols=30  Identities=13%  Similarity=0.134  Sum_probs=24.3

Q ss_pred             EEEEcCCCCHhHHHHHhcCC-CcEEEEecCC
Q 010086          120 SLCVETQYGQDVFALKEIGV-EDSIGIFKKS  149 (518)
Q Consensus       120 vLDVGcGtG~~~~~L~~~g~-~~v~gID~s~  149 (518)
                      +||||||.|..+..+.+.+. .+++++|.++
T Consensus         2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~   32 (143)
T TIGR01444         2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLP   32 (143)
T ss_pred             EEEccCCccHHHHHHHHhCCCCEEEEEecCH
Confidence            79999999999988877653 3789998754

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=83.76  E-value=1.7  Score=42.35  Aligned_cols=56  Identities=18%  Similarity=0.105  Sum_probs=41.6

Q ss_pred             CeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------C----CcEEeccCCCCCCCCCceeEEEEcC
Q 010086          118 AKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------K----PLVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       118 ~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------~----~l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      +...|+|+|+|.++...++. ..+|++|+..+.           +    ..++.+|+..-.|  +.-|.|+|-.
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEm  104 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEM  104 (252)
T ss_pred             hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHH
Confidence            57899999999988555544 468999998752           1    1246788888777  6678888865

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=83.70  E-value=0.52  Score=41.83  Aligned_cols=39  Identities=18%  Similarity=0.346  Sum_probs=27.5

Q ss_pred             ceeEEEEcCc----eeeccCC-hHHHHHHHHhcccCCcEEEEEe
Q 010086          168 TFDFVFVGGA----RLEKASK-PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       168 SFD~V~s~~~----~l~~~~d-p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .||+|+|..+    +|.|-++ ...+++-+++.|+|||++++..
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp   44 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP   44 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence            3899999885    2333221 2368899999999999999975

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=83.31  E-value=14  Score=37.88  Aligned_cols=103  Identities=13%  Similarity=0.167  Sum_probs=54.2

Q ss_pred             hhHHHHHHHHHHc-CCCCCCCeEEEEcCCCCH--hHHHHHh--cCCCcEEEEecCC------------CCC---cEEecc
Q 010086           99 NFYSSVFQDLISE-GYLSQSAKSLCVETQYGQ--DVFALKE--IGVEDSIGIFKKS------------SKP---LVISGE  158 (518)
Q Consensus        99 ~~~~~l~~~L~~~-gll~~~~rvLDVGcGtG~--~~~~L~~--~g~~~v~gID~s~------------~~~---l~~~~d  158 (518)
                      .|+....+.|.++ |.    .+.||||||--.  .+...++  ..-.+|+-+|..+            .+.   .++++|
T Consensus        54 ~Fl~RaVr~la~~~GI----rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD  129 (267)
T PF04672_consen   54 AFLRRAVRYLAEEAGI----RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQAD  129 (267)
T ss_dssp             HHHHHHHHHHHCTT-------EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--
T ss_pred             HHHHHHHHHHHHhcCc----ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCC
Confidence            4666666667665 43    589999999631  2333332  2347899999763            122   245555


Q ss_pred             CCCC------CCCCCcee-----EEEEcCceeeccC---ChHHHHHHHHhcccCCcEEEEEe
Q 010086          159 GHRI------PFDGNTFD-----FVFVGGARLEKAS---KPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       159 a~~L------Pf~D~SFD-----~V~s~~~~l~~~~---dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ..+.      |--.+-+|     .|+...+ |||++   +|...++.+...|-||.+++++-
T Consensus       130 ~r~p~~iL~~p~~~~~lD~~rPVavll~~v-Lh~v~D~~dp~~iv~~l~d~lapGS~L~ish  190 (267)
T PF04672_consen  130 LRDPEAILAHPEVRGLLDFDRPVAVLLVAV-LHFVPDDDDPAGIVARLRDALAPGSYLAISH  190 (267)
T ss_dssp             TT-HHHHHCSHHHHCC--TTS--EEEECT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred             CCCHHHHhcCHHHHhcCCCCCCeeeeeeee-eccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence            4331      00112233     3444455 89986   47789999999999999999973

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=83.22  E-value=5.8  Score=41.29  Aligned_cols=91  Identities=15%  Similarity=0.172  Sum_probs=55.0

Q ss_pred             HHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCC----C-C-CCCCcee
Q 010086          108 LISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHR----I-P-FDGNTFD  170 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~----L-P-f~D~SFD  170 (518)
                      +...+.++++.+||-.|+|. |..+..+++ .|...|+++|.++..         ..++.....+    + . .....+|
T Consensus       168 ~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d  247 (358)
T TIGR03451       168 AVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGAD  247 (358)
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence            34445578899999999876 666555554 564469999865421         0111111000    0 0 1223589


Q ss_pred             EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +|+....      .+ ..+.+..+.||+||++++.
T Consensus       248 ~vid~~g------~~-~~~~~~~~~~~~~G~iv~~  275 (358)
T TIGR03451       248 VVIDAVG------RP-ETYKQAFYARDLAGTVVLV  275 (358)
T ss_pred             EEEECCC------CH-HHHHHHHHHhccCCEEEEE
Confidence            8887543      12 4577889999999998764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=83.03  E-value=3.3  Score=42.33  Aligned_cols=83  Identities=13%  Similarity=0.105  Sum_probs=49.7

Q ss_pred             CCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCCCcEEeccCCCCCC---CCCceeEEEEcCceeeccCChHHHH
Q 010086          115 SQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSKPLVISGEGHRIPF---DGNTFDFVFVGGARLEKASKPLDFA  189 (518)
Q Consensus       115 ~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~~l~~~~da~~LPf---~D~SFD~V~s~~~~l~~~~dp~~~l  189 (518)
                      .++.++|-+|||. |..+..+++ .|...++++|.++..-.....+ .-+..   ....||+|+....      . ...+
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~-~~i~~~~~~~~g~Dvvid~~G------~-~~~~  214 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY-EVLDPEKDPRRDYRAIYDASG------D-PSLI  214 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc-cccChhhccCCCCCEEEECCC------C-HHHH
Confidence            3578899999987 766655544 5755577777643110000000 00000   1246899887653      1 2357


Q ss_pred             HHHHhcccCCcEEEEE
Q 010086          190 SEIVRTLKPEGFAVVH  205 (518)
Q Consensus       190 ~Ei~RVLKPGG~lvi~  205 (518)
                      .++.+.|+|||++++.
T Consensus       215 ~~~~~~l~~~G~iv~~  230 (308)
T TIGR01202       215 DTLVRRLAKGGEIVLA  230 (308)
T ss_pred             HHHHHhhhcCcEEEEE
Confidence            8889999999998764

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=82.85  E-value=1.7  Score=46.11  Aligned_cols=86  Identities=15%  Similarity=0.228  Sum_probs=51.5

Q ss_pred             CeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC-------------------CCcEEeccCCCCCCC-CCceeEEEEc
Q 010086          118 AKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS-------------------KPLVISGEGHRIPFD-GNTFDFVFVG  175 (518)
Q Consensus       118 ~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~-------------------~~l~~~~da~~LPf~-D~SFD~V~s~  175 (518)
                      .++||||.|+|..+-++... . ...++-++.|+.                   +.--+..|  .+|++ ..++++|+..
T Consensus       115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~d--Rl~lp~ad~ytl~i~~  192 (484)
T COG5459         115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTED--RLSLPAADLYTLAIVL  192 (484)
T ss_pred             chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchh--ccCCCccceeehhhhh
Confidence            46999999999987666542 1 124444444421                   00012223  44553 4568888876


Q ss_pred             CceeeccCChH---HHHHHHHhcccCCcEEEEEe
Q 010086          176 GARLEKASKPL---DFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       176 ~~~l~~~~dp~---~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +- |-+..++.   ..++-....+.|||.++|.-
T Consensus       193 ~e-Ll~d~~ek~i~~~ie~lw~l~~~gg~lVivE  225 (484)
T COG5459         193 DE-LLPDGNEKPIQVNIERLWNLLAPGGHLVIVE  225 (484)
T ss_pred             hh-hccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence            65 44444332   35677888999999988863

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=81.49  E-value=9.3  Score=36.88  Aligned_cols=91  Identities=22%  Similarity=0.174  Sum_probs=56.3

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCC-------CCCCC
Q 010086          106 QDLISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRI-------PFDGN  167 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~L-------Pf~D~  167 (518)
                      .-+.....+.++.+||..|+|+ |..+..+.+ .| .++++++.++..         ..++  +....       ....+
T Consensus       124 ~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~  200 (271)
T cd05188         124 HALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADHVI--DYKEEDLEEELRLTGGG  200 (271)
T ss_pred             HHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCceec--cCCcCCHHHHHHHhcCC
Confidence            3344555568899999999996 555544444 56 688888875311         0011  11111       11245


Q ss_pred             ceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          168 TFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       168 SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .+|+|+....       ....+..+.+.|+++|.++...
T Consensus       201 ~~d~vi~~~~-------~~~~~~~~~~~l~~~G~~v~~~  232 (271)
T cd05188         201 GADVVIDAVG-------GPETLAQALRLLRPGGRIVVVG  232 (271)
T ss_pred             CCCEEEECCC-------CHHHHHHHHHhcccCCEEEEEc
Confidence            7999987542       1145777889999999988754

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=81.37  E-value=1.9  Score=47.64  Aligned_cols=49  Identities=22%  Similarity=0.173  Sum_probs=36.9

Q ss_pred             HhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC
Q 010086           98 VNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS  150 (518)
Q Consensus        98 v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~  150 (518)
                      ++.+...+++..   .++.+..+||+-||||....++++ |+..|+||++++.
T Consensus       368 aevLys~i~e~~---~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~  416 (534)
T KOG2187|consen  368 AEVLYSTIGEWA---GLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPD  416 (534)
T ss_pred             HHHHHHHHHHHh---CCCCCcEEEEEeecCCceehhhhc-cccceeeeecChh
Confidence            444555555443   356778899999999999988875 5689999999863

>PRK07402 precorrin-6B methylase; Provisional

Probab=81.24  E-value=3.5  Score=39.38  Aligned_cols=40  Identities=33%  Similarity=0.308  Sum_probs=30.9

Q ss_pred             CCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086          317 KNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE  362 (518)
Q Consensus       317 ~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~  362 (518)
                      +++..++|+|++ .|. ++.++.+.+|..    +|+++|.||...+
T Consensus        39 ~~~~~VLDiG~G-~G~-~~~~la~~~~~~----~V~~vD~s~~~~~   78 (196)
T PRK07402         39 EPDSVLWDIGAG-TGT-IPVEAGLLCPKG----RVIAIERDEEVVN   78 (196)
T ss_pred             CCCCEEEEeCCC-CCH-HHHHHHHHCCCC----EEEEEeCCHHHHH
Confidence            466789999999 485 556777777743    8999999998754

>PRK04457 spermidine synthase; Provisional

Probab=80.87  E-value=14  Score=37.36  Aligned_cols=36  Identities=17%  Similarity=0.268  Sum_probs=28.5

Q ss_pred             EEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086          321 VYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE  362 (518)
Q Consensus       321 V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~  362 (518)
                      -++|+|++ -|+ ++.++.+.+|..    +|+++|.||...+
T Consensus        69 ~vL~IG~G-~G~-l~~~l~~~~p~~----~v~~VEidp~vi~  104 (262)
T PRK04457         69 HILQIGLG-GGS-LAKFIYTYLPDT----RQTAVEINPQVIA  104 (262)
T ss_pred             EEEEECCC-HhH-HHHHHHHhCCCC----eEEEEECCHHHHH
Confidence            36999998 374 657888888854    8999999998754

>PRK10742 putative methyltransferase; Provisional

Probab=80.34  E-value=3.4  Score=41.86  Aligned_cols=36  Identities=14%  Similarity=0.215  Sum_probs=30.7

Q ss_pred             CCCCCC--eEEEEcCCCCHhHHHHHhcCCCcEEEEecCC
Q 010086          113 YLSQSA--KSLCVETQYGQDVFALKEIGVEDSIGIFKKS  149 (518)
Q Consensus       113 ll~~~~--rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~  149 (518)
                      .+++|.  +|||+=+|+|..+..++..|. .|++++.++
T Consensus        83 glk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p  120 (250)
T PRK10742         83 GIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNP  120 (250)
T ss_pred             CCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCH
Confidence            357777  899999999999998988884 599999873

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=80.17  E-value=3.6  Score=39.32  Aligned_cols=62  Identities=16%  Similarity=0.173  Sum_probs=38.7

Q ss_pred             cCCCChhhhhhhhhcccccCCcccccccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccch
Q 010086          289 EEPLKPWITMKRNIKNIKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFH  361 (518)
Q Consensus       289 E~~~~~~~~~~~~~~~~~ylp~~~d~s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~  361 (518)
                      ..|..+|...+++....-.+  ..++   ++..++|+|++. |. ++-.+...+|..    +|+++|.++...
T Consensus        18 ~~~~~~~~~~~~~~~d~i~~--~~~~---~~~~vLDiGcGt-G~-~s~~la~~~~~~----~V~~iD~s~~~~   79 (181)
T TIGR00138        18 TSLKTPEEIWERHILDSLKL--LEYL---DGKKVIDIGSGA-GF-PGIPLAIARPEL----KLTLLESNHKKV   79 (181)
T ss_pred             cccCCHHHHHHHHHHHHHHH--HHhc---CCCeEEEecCCC-Cc-cHHHHHHHCCCC----eEEEEeCcHHHH
Confidence            45566666666665543211  0111   256899999994 74 434666677743    799999999743

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=80.11  E-value=3.1  Score=45.15  Aligned_cols=88  Identities=10%  Similarity=-0.009  Sum_probs=52.8

Q ss_pred             CCCCCCCeEEEEcCCC-CHhH-HHHHhcCCCcEEEEecCCCCCcEEecc-CCCCCCC--CCceeEEEEcCceeeccCChH
Q 010086          112 GYLSQSAKSLCVETQY-GQDV-FALKEIGVEDSIGIFKKSSKPLVISGE-GHRIPFD--GNTFDFVFVGGARLEKASKPL  186 (518)
Q Consensus       112 gll~~~~rvLDVGcGt-G~~~-~~L~~~g~~~v~gID~s~~~~l~~~~d-a~~LPf~--D~SFD~V~s~~~~l~~~~dp~  186 (518)
                      +.+-+|.+|+-+|+|. |..+ ..++..| .+|+.+|.++........+ +...+..  -..+|+|+....      .+.
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~ak~~G-a~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG------~~~  269 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQG-ARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTG------NKD  269 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCC------CHH
Confidence            5556899999999998 7655 4455577 4899999875321100000 0000110  024699987543      233


Q ss_pred             HHHHHHHhcccCCcEEEEEe
Q 010086          187 DFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       187 ~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .+-.+..+.+||||+++..-
T Consensus       270 ~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         270 IITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             HHHHHHHhcCCCCcEEEEeC
Confidence            33345689999999887753

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	518
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	5e-04
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	8e-04

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 Length = 409

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 43/180 (23%)

Query: 314 ISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK-------- 365
           + F +    VD GA S G S+         K  +   V+ IE D+   +  +        
Sbjct: 222 LRFSDSEKMVDCGA-SIGESLAGLIGVTKGKFER---VWMIEPDRINLQTLQNVLRRYTD 277

Query: 366 --VKKKVKLLPYAAWVRNETLSFQINHDPDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDR 423
                ++ +    A      + F                 G ++P  +  +     +V  
Sbjct: 278 TNFASRITVHGCGAGENTIRVPFNHEGG----------HGGFVKPADADHEPADLIDVRP 327

Query: 424 IQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDE----IFLECHYN 479
           I   D  D + +  T      +KMD+EG+E   +      GA   I E    + +  ++ 
Sbjct: 328 I---D--DIIDDAPT-----FIKMDIEGSELSALK-----GARRAISEHKPKLAISAYHR 372

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 50/328 (15%), Positives = 95/328 (28%), Gaps = 83/328 (25%)

Query: 218 LDLFN-SCK-LVKSRDIDGIDSSLPYIREIVLKKESDLILGHRENLPDGNVANKC----- 270
            + FN SCK L+ +R     D         +      + L   E     ++  K      
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK---SLLLKYLDCRP 315

Query: 271 -SVPGYKQAFVRKAEPLIME---EPLKPWITMKRNIKNIKY--LPSMADISFKN------ 318
             +P  ++       P  +    E ++  +    N K++    L ++ + S         
Sbjct: 316 QDLP--REV--LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 319 RYVYVDVGARSYGSSIGSWFKKQYPKQNK-TFDVYAI--EADKTFHEEYKVKKKVKLLPY 375
           R ++  +       S+   F    P        + ++             V K  K    
Sbjct: 372 RKMFDRL-------SV---F----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 376 AAWVRNETLSFQINHDPDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKN 435
               +  T+S         E+ VK      +   +S+ D       +  + FD  D +  
Sbjct: 418 EKQPKESTISI---PSIYLELKVKLENEYALH--RSIVD-----HYNIPKTFDSDDLIPP 467

Query: 436 TVTDK---DFVV--MKMDVEGTEFDLIPRLFETGAICLIDEIFLE---CHYNRWQRCCPG 487
            + D+     +   +K         L   +F       +D  FLE    H +       G
Sbjct: 468 YL-DQYFYSHIGHHLKNIEHPERMTLFRMVF-------LDFRFLEQKIRH-DSTAWNASG 518

Query: 488 ------QRSPKYKK-------TYEQCLE 502
                 Q+   YK         YE+ + 
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVN 546

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 8e-05
 Identities = 28/195 (14%), Positives = 64/195 (32%), Gaps = 34/195 (17%)

Query: 272 VPGYKQAFVRKAEPLIMEEPLKPWITMKRNIKNIKYLPSMADISFKNRYVYVDVGARSYG 331
           +  ++ AFV   +   +++  K  ++ K  I +I         + +  +  +        
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILS-KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80

Query: 332 SSIGS-------WFKKQYPKQNK----TFDVYAIEADKTFHE-----EYKVKKKVKLLPY 375
             +         +       + +       +Y  + D+ +++     +Y V +    L  
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK- 139

Query: 376 AAWVRNETLSFQINHDPDKEVVVKG-RGMGRIQPVQSL-SDGGFDGEVDRIQGFD-FADW 432
              +R   L  +    P K V++ G  G G+      +  D     +V     F  F  W
Sbjct: 140 ---LRQALLELR----PAKNVLIDGVLGSGK----TWVALDVCLSYKVQCKMDFKIF--W 186

Query: 433 LKNTVTDKDFVVMKM 447
           L     +    V++M
Sbjct: 187 LNLKNCNSPETVLEM 201

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 154 VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEY 212
           V+ G    +P    +FDF  +    +     P     E  R LK  G+ +V +  ++ +
Sbjct: 88  VLKGTAENLPLKDESFDFALMVTT-ICFVDDPERALKEAYRILKKGGYLIVGIVDRESF 145

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 157 GEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVV 204
           G+   +PF+   F+ +    + LE   +PL   +EI R LK +G+A +
Sbjct: 105 GDLSSLPFENEQFEAIMAINS-LEWTEEPLRALNEIKRVLKSDGYACI 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	518
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.64
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.58
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.58
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.56
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.54
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.54
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.53
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.53
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.53
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.52
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.52
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.52
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.52
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.52
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.51
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.51
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.51
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.5
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.5
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.5
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.5
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.5
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.5
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.5
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.49
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.49
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.49
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.48
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.48
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.48
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.47
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.47
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.47
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.46
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.46
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.45
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.45
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.45
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.44
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.44
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.43
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.43
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.42
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.42
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.41
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.4
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.4
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.4
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.39
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.39
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.39
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.39
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.38
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.38
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.38
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.37
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.37
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.37
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.36
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.36
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.36
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.35
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.35
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.35
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.35
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	99.34
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.34
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.33
3ocj_A	305	Putative exported protein; structural genomics, PS	99.33
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.33
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.32
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.32
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.31
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.31
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.31
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.3
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.3
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.29
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.29
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.28
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.27
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.27
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.25
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.25
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.25
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.25
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.24
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.23
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.23
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.23
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.22
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.22
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.22
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.21
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.2
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.2
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.2
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.2
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.19
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.19
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.18
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.18
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.18
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.18
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.18
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.17
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.14
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.14
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.13
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.13
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.12
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.12
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.12
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.12
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.11
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.11
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.1
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.1
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.1
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.1
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.09
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.09
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.08
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.08
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.08
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.07
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.07
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.07
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.07
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.06
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.05
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.05
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.03
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.03
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.03
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.03
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.03
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.03
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.02
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.02
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.01
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.01
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.01
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.0
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.0
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.0
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.0
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.99
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.99
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.99
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.99
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.99
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.98
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.97
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.97
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.96
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.96
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.96
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.95
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.95
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.95
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.94
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.94
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.94
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.94
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.93
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.93
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.92
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.92
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.92
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.91
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.91
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.9
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.9
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.89
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.88
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.88
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.88
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.88
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.87
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.85
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.84
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.83
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.82
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.81
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.81
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.8
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.79
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.78
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.76
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.75
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.73
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.73
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.72
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.72
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.71
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.71
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.71
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.69
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.69
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.68
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.68
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.66
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.66
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.65
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.64
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.63
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.62
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.61
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.6
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.58
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.58
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.58
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.58
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.57
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.57
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.57
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.57
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.56
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.56
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.55
2o07_A	304	Spermidine synthase; structural genomics, structur	98.54
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.54
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.52
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.52
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.49
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.48
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.48
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.46
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.46
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.45
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.44
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.42
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.42
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.42
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.41
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.4
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.39
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.39
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.39
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.36
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.36
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.35
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.34
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.33
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.29
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.29
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.29
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.29
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.28
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.28
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.23
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.22
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.17
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.16
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.14
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.08
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.02
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	97.96
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.96
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	97.86
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	97.83
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	97.83
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.82
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	97.78
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	97.75
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.74
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	97.73
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	97.68
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.67
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.65
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.64
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.51
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.5
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.47
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.46
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.39
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.37
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.37
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.31
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.29
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.22
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.2
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	97.17
3khk_A	544	Type I restriction-modification system methylation	97.04
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	96.97
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	96.96
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	96.94
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	96.92
3lkd_A	542	Type I restriction-modification system methyltrans	96.73
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	96.68
3ll7_A	410	Putative methyltransferase; methytransferase, stru	96.64
3cvo_A	202	Methyltransferase-like protein of unknown functio;	96.07
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	95.73
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	95.61
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	95.13
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.49
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	94.23
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	93.11
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	91.36
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	91.05
3ufb_A	530	Type I restriction-modification system methyltran	91.02
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	90.84
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	90.76
2zig_A	297	TTHA0409, putative modification methylase; methylt	90.41
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	90.2
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	90.19
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	90.16
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	90.05
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	90.03
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	89.76
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	89.73
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	89.47
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	89.18
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	89.14
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	88.79
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	88.68
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	88.46
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	88.31
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	88.3
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	87.77
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	87.35
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	86.76
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	86.16
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	85.05
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	84.52
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	84.48
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	84.03
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	83.3
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	83.13
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	82.3
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	82.1
3gms_A	340	Putative NADPH:quinone reductase; structural genom	81.84
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	81.61
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	81.42
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	81.19
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	81.16
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	80.54

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.64  E-value=5.9e-16  Score=153.77  Aligned_cols=90  Identities=13%  Similarity=0.087  Sum_probs=78.2

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------CCcEEeccCCCCCCCCCceeEEEEcCceeeccCCh
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKP  185 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp  185 (518)
                      ..+.+|||||||+|..+..|++.+ .+|+|+|+|+.         ...+++++++++||+|++||+|+|..+ +||+ ++
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~~~~-~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~-~h~~-~~  114 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLAEFF-ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQA-MHWF-DL  114 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHHTTC-SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSC-CTTC-CH
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHhC-CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeee-hhHh-hH
Confidence            456799999999999999999887 79999999841         123568999999999999999999997 8776 68


Q ss_pred             HHHHHHHHhcccCCcEEEEEec
Q 010086          186 LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       186 ~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      .++++|+.|+|||||++++...
T Consensus       115 ~~~~~e~~rvLkpgG~l~~~~~  136 (257)
T 4hg2_A          115 DRFWAELRRVARPGAVFAAVTY  136 (257)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEEEC
Confidence            8999999999999999988754

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.58  E-value=3.7e-15  Score=145.58  Aligned_cols=91  Identities=22%  Similarity=0.266  Sum_probs=79.9

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      ++++.+|||||||+|..+..+.+.+ .+++|+|+++.               ...++.+|++++||++++||+|++..+ 
T Consensus        35 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~-  112 (260)
T 1vl5_A           35 LKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIA-  112 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESC-
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhh-
Confidence            5688999999999999999998876 59999999741               123568999999999999999999997 


Q ss_pred             eeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          179 LEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ++|++++..+++|+.|+|||||++++..
T Consensus       113 l~~~~d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          113 AHHFPNPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             GGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hHhcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            9999999999999999999999998864

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.58  E-value=6.6e-15  Score=139.97  Aligned_cols=119  Identities=9%  Similarity=0.051  Sum_probs=89.2

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------------------CCcEEeccCCCCCCC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------------------KPLVISGEGHRIPFD  165 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------------------~~l~~~~da~~LPf~  165 (518)
                      .++++.+|||+|||+|..+..|++.| .+|+|||+|+.                           ...++++|+.++|++
T Consensus        19 ~~~~~~~vLD~GCG~G~~~~~la~~g-~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~   97 (203)
T 1pjz_A           19 NVVPGARVLVPLCGKSQDMSWLSGQG-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   97 (203)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             ccCCCCEEEEeCCCCcHhHHHHHHCC-CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence            35688999999999999999999888 59999999831                           123568999999998


Q ss_pred             C-CceeEEEEcCceeeccCCh--HHHHHHHHhcccCCcEEEE-EecCCC------c--cCchhHhhhcc-CccEEEEecc
Q 010086          166 G-NTFDFVFVGGARLEKASKP--LDFASEIVRTLKPEGFAVV-HVRAKD------E--YSFNSFLDLFN-SCKLVKSRDI  232 (518)
Q Consensus       166 D-~SFD~V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi-~~~~~~------~--~s~~~~~~lf~-~~~~v~~~~v  232 (518)
                      + ++||+|++..+ |+|++.+  .++++|+.|+|||||++++ ......      .  ++...+..+|. .|+++.+...
T Consensus        98 ~~~~fD~v~~~~~-l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~gf~i~~~~~~  176 (203)
T 1pjz_A           98 DIGHCAAFYDRAA-MIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGGQ  176 (203)
T ss_dssp             HHHSEEEEEEESC-GGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCSSEEEEEEEES
T ss_pred             cCCCEEEEEECcc-hhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcCCcEEEEeccc
Confidence            7 89999999887 8888643  3589999999999998443 332211      1  24455666666 4666666554


Q ss_pred             C
Q 010086          233 D  233 (518)
Q Consensus       233 ~  233 (518)
                      +
T Consensus       177 ~  177 (203)
T 1pjz_A          177 D  177 (203)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.56  E-value=1.2e-14  Score=132.47  Aligned_cols=129  Identities=16%  Similarity=0.165  Sum_probs=101.8

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------CCcEEeccCCCCCCCCCceeEEEEcCceeeccC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKAS  183 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~  183 (518)
                      ++++.+|||+|||+|..+..+.+.+ .+++|+|+++.          ...+..+|   +|+++++||+|++..+ ++|++
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~-l~~~~   89 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANS-FHDMD   89 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTE-EEEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESC-STTCS
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccc-hhccc
Confidence            5678899999999999999998876 49999999742          12344566   8899999999999998 99999


Q ss_pred             ChHHHHHHHHhcccCCcEEEEEecCCC----------ccCchhHhhhccCccEEEEeccCCCCCCccceeEEEEeecccc
Q 010086          184 KPLDFASEIVRTLKPEGFAVVHVRAKD----------EYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKESDL  253 (518)
Q Consensus       184 dp~~~l~Ei~RVLKPGG~lvi~~~~~~----------~~s~~~~~~lf~~~~~v~~~~v~~~~~~~p~~~~vv~kK~~~~  253 (518)
                      ++..+++++.|+|||||++++......          .++...+..++..|+++.....+.+.+      .++++++...
T Consensus        90 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gf~~~~~~~~~~~~~------~l~~~~~~~~  163 (170)
T 3i9f_A           90 DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFSNFVVEKRFNPTPYHF------GLVLKRKTSE  163 (170)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTTTEEEEEEECSSTTEE------EEEEEECCCC
T ss_pred             CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHhCcEEEEccCCCCceE------EEEEecCCCC
Confidence            999999999999999999988743222          134456777767889999888765442      5777776444

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.54  E-value=4.8e-15  Score=146.62  Aligned_cols=119  Identities=15%  Similarity=0.145  Sum_probs=84.5

Q ss_pred             hccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------CCcEEe
Q 010086           87 DMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------KPLVIS  156 (518)
Q Consensus        87 ~~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------~~l~~~  156 (518)
                      +.|+...+.+.......+.+.+.+.-.+.++.+|||||||+|..+..+.+.+ .+++|+|+++.          ...++.
T Consensus        28 ~~w~a~~y~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~  106 (279)
T 3ccf_A           28 NFWDATLYQDKHSFVWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNYPHLHFDV  106 (279)
T ss_dssp             -------------CCSSSCCHHHHHHCCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCTTSCEEE
T ss_pred             hhcCHHHHhhcchHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHhhCCCCEEEE
Confidence            3466555554332222222223332235678899999999999998888855 69999999842          234678


Q ss_pred             ccCCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          157 GEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       157 ~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +|++++|+ +++||+|++..+ ++|+.++..+++|+.|+|||||++++.+..
T Consensus       107 ~d~~~~~~-~~~fD~v~~~~~-l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~  156 (279)
T 3ccf_A          107 ADARNFRV-DKPLDAVFSNAM-LHWVKEPEAAIASIHQALKSGGRFVAEFGG  156 (279)
T ss_dssp             CCTTTCCC-SSCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CChhhCCc-CCCcCEEEEcch-hhhCcCHHHHHHHHHHhcCCCcEEEEEecC
Confidence            99999998 689999999998 999999999999999999999999987643

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.54  E-value=4.6e-14  Score=132.31  Aligned_cols=127  Identities=9%  Similarity=0.012  Sum_probs=99.8

Q ss_pred             CCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------CCcEEeccCCCCCCCCCceeEEEEcCceeeccC--C
Q 010086          117 SAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKAS--K  184 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~--d  184 (518)
                      +.+|||||||+|..+..|++.| .+++|+|+++.          ...++.+|..++|+++++||+|++..+ ++|++  +
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~~~~~  119 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLG-HQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYS-LIHMGPGE  119 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTT-CCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESS-STTCCTTT
T ss_pred             CCeEEEecCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhh-HhcCCHHH
Confidence            7899999999999999998887 59999999742          234678999999999999999999997 99997  8


Q ss_pred             hHHHHHHHHhcccCCcEEEEEecCCCc-------------cCchhHhhhcc--CccEEEEeccCCCCCCccceeEEEEee
Q 010086          185 PLDFASEIVRTLKPEGFAVVHVRAKDE-------------YSFNSFLDLFN--SCKLVKSRDIDGIDSSLPYIREIVLKK  249 (518)
Q Consensus       185 p~~~l~Ei~RVLKPGG~lvi~~~~~~~-------------~s~~~~~~lf~--~~~~v~~~~v~~~~~~~p~~~~vv~kK  249 (518)
                      +..+++++.|+|||||.+++.+...+.             ++...+..++.  .++++.+....+    -|.......++
T Consensus       120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~----~p~~~l~~~~~  195 (203)
T 3h2b_A          120 LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR----FPHAYLTAEAS  195 (203)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT----SSEEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC----Ccchhhhhhhh
Confidence            899999999999999999988643321             34455666654  478888887654    35554444444

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.53  E-value=2.7e-14  Score=138.51  Aligned_cols=105  Identities=17%  Similarity=0.138  Sum_probs=86.5

Q ss_pred             HHHHHHHHHH-cCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCC
Q 010086          101 YSSVFQDLIS-EGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFD  165 (518)
Q Consensus       101 ~~~l~~~L~~-~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~  165 (518)
                      +..+++.+.+ ...+.++.+|||||||+|..+..+.+.+ .+++|+|+++.              ...++.+|++++|++
T Consensus        23 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~  101 (263)
T 2yqz_A           23 AGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLP  101 (263)
T ss_dssp             HHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSC
T ss_pred             HHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCC
Confidence            3344444433 3346788999999999999998888776 69999999741              123568999999999


Q ss_pred             CCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          166 GNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       166 D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +++||+|++..+ ++|++++..+++|+.|+|||||++++...
T Consensus       102 ~~~fD~v~~~~~-l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (263)
T 2yqz_A          102 DESVHGVIVVHL-WHLVPDWPKVLAEAIRVLKPGGALLEGWD  142 (263)
T ss_dssp             TTCEEEEEEESC-GGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCeeEEEECCc-hhhcCCHHHHHHHHHHHCCCCcEEEEEec
Confidence            999999999997 99999999999999999999999988743

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.53  E-value=3.7e-14  Score=134.34  Aligned_cols=130  Identities=21%  Similarity=0.232  Sum_probs=100.8

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcC--CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIG--VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g--~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      ++++.+|||+|||+|..+..+.+.+  ..+++|+|+++.               ...+..+|..++|+++++||+|++..
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  114 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAF  114 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEES
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeeh
Confidence            5788999999999999998887753  359999999741               12356899999999999999999999


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEEecCCC----------ccCchhHhhhcc--CccEEEEeccCCCCCCccceeE
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKD----------EYSFNSFLDLFN--SCKLVKSRDIDGIDSSLPYIRE  244 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~----------~~s~~~~~~lf~--~~~~v~~~~v~~~~~~~p~~~~  244 (518)
                      + ++|+.++..+++++.|+|||||.+++......          .++...+..++.  .|+++......+..      ..
T Consensus       115 ~-l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~------~~  187 (219)
T 3dh0_A          115 T-FHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYC------FG  187 (219)
T ss_dssp             C-GGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTTE------EE
T ss_pred             h-hhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCce------EE
Confidence            8 99999999999999999999999988743221          134455655554  57888877765432      24


Q ss_pred             EEEeec
Q 010086          245 IVLKKE  250 (518)
Q Consensus       245 vv~kK~  250 (518)
                      ++.+|.
T Consensus       188 ~~~~k~  193 (219)
T 3dh0_A          188 VYAMIV  193 (219)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            666665

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.53  E-value=1.4e-14  Score=140.54  Aligned_cols=117  Identities=14%  Similarity=0.189  Sum_probs=90.3

Q ss_pred             cCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------CCcEEec
Q 010086           89 YTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------KPLVISG  157 (518)
Q Consensus        89 w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------~~l~~~~  157 (518)
                      |+...|.+...........+++...+.++.+|||||||+|..+..+.+. +..+++|+|+++.          ...++.+
T Consensus         6 W~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~   85 (259)
T 2p35_A            6 WSAQQYLKFEDERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKA   85 (259)
T ss_dssp             --CGGGBCCCCGGGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEEC
Confidence            5544444433333334445555544677889999999999999888775 2369999999741          2346789


Q ss_pred             cCCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          158 EGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       158 da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      |++++| ++++||+|++..+ ++|++++..+++++.|+|||||++++.+.
T Consensus        86 d~~~~~-~~~~fD~v~~~~~-l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A           86 DLATWK-PAQKADLLYANAV-FQWVPDHLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             CTTTCC-CSSCEEEEEEESC-GGGSTTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             ChhhcC-ccCCcCEEEEeCc-hhhCCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence            999999 8999999999998 99999999999999999999999999864

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.52  E-value=3.1e-14  Score=138.09  Aligned_cols=98  Identities=15%  Similarity=0.061  Sum_probs=81.6

Q ss_pred             HHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCcee
Q 010086          107 DLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFD  170 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD  170 (518)
                      .+.+...++++.+|||||||+|..+..+++....+++|+|+++.                ...++.+|++++|+ +++||
T Consensus        27 ~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD  105 (256)
T 1nkv_A           27 TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCD  105 (256)
T ss_dssp             HHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEE
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCC
Confidence            33443346789999999999999998887652268999999741                12356899999998 99999


Q ss_pred             EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +|++..+ ++|+.++..+++|+.|+|||||++++..
T Consensus       106 ~V~~~~~-~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          106 VAACVGA-TWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             EEEEESC-GGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             EEEECCC-hHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence            9999987 9999999999999999999999998864

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.52  E-value=3.1e-14  Score=138.21  Aligned_cols=92  Identities=16%  Similarity=0.159  Sum_probs=81.7

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------CCcEEeccCCCCCCCCCceeEEEEcCceeecc
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKA  182 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~  182 (518)
                      .++.+|||||||+|..+..+++.|..+++|+|+++.            ...++.+|+..+|+++++||+|++..+ ++|+
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~  121 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLA-LHYI  121 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESC-GGGC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchh-hhhh
Confidence            478899999999999999998887569999999741            123578999999999999999999997 9999


Q ss_pred             CChHHHHHHHHhcccCCcEEEEEec
Q 010086          183 SKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       183 ~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      .++..+++++.|+|||||++++.+.
T Consensus       122 ~~~~~~l~~~~~~LkpgG~l~~~~~  146 (253)
T 3g5l_A          122 ASFDDICKKVYINLKSSGSFIFSVE  146 (253)
T ss_dssp             SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhHHHHHHHHHHHcCCCcEEEEEeC
Confidence            9999999999999999999999764

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.52  E-value=2.4e-13  Score=128.79  Aligned_cols=127  Identities=17%  Similarity=0.104  Sum_probs=98.3

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCCCcEEeccCCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHh
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVR  194 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~R  194 (518)
                      .++.+|||||||+|..+..+   + .+++|+|+++....+..+|+.++|+++++||+|++..+ +|+ .++..+++++.|
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l---~-~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~-~~~~~~l~~~~~  139 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSI---R-NPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLS-LMG-TNIRDFLEEANR  139 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHC---C-SCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESC-CCS-SCHHHHHHHHHH
T ss_pred             CCCCeEEEECCcCCHHHHHh---h-ccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehh-ccc-cCHHHHHHHHHH
Confidence            57789999999999988776   2 68999999987667789999999999999999999987 865 889999999999


Q ss_pred             cccCCcEEEEEecCCCccCchhHhhhcc--CccEEEEeccCCCCCCccceeEEEEeecccc
Q 010086          195 TLKPEGFAVVHVRAKDEYSFNSFLDLFN--SCKLVKSRDIDGIDSSLPYIREIVLKKESDL  253 (518)
Q Consensus       195 VLKPGG~lvi~~~~~~~~s~~~~~~lf~--~~~~v~~~~v~~~~~~~p~~~~vv~kK~~~~  253 (518)
                      +|||||.+++........+...+..++.  .++++......+      +...++++|....
T Consensus       140 ~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~------~~~~~~~~k~~~~  194 (215)
T 2zfu_A          140 VLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTNS------HFFLFDFQKTGPP  194 (215)
T ss_dssp             HEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCST------TCEEEEEEECSSC
T ss_pred             hCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCCC------eEEEEEEEecCcc
Confidence            9999999998754333334455555554  467777554322      2335778886444

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.52  E-value=5.3e-14  Score=137.90  Aligned_cols=102  Identities=18%  Similarity=0.231  Sum_probs=84.9

Q ss_pred             HHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCC
Q 010086          104 VFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGN  167 (518)
Q Consensus       104 l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~  167 (518)
                      +.+.+++...++++.+|||||||+|..+..+++....+++|+|+++.                ...++.+|..++||+++
T Consensus        49 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  128 (273)
T 3bus_A           49 LTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA  128 (273)
T ss_dssp             HHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence            33444444456788999999999999998887643379999999741                12356899999999999


Q ss_pred             ceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          168 TFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       168 SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +||+|++..+ ++|++++..+++|+.|+|||||++++..
T Consensus       129 ~fD~v~~~~~-l~~~~~~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          129 SFDAVWALES-LHHMPDRGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             CEEEEEEESC-TTTSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CccEEEEech-hhhCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            9999999998 9999999999999999999999998874

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.52  E-value=2.5e-14  Score=138.83  Aligned_cols=100  Identities=20%  Similarity=0.269  Sum_probs=84.4

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-------------CCcEEeccCCCCCCCCCcee
Q 010086          105 FQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGNTFD  170 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~SFD  170 (518)
                      .+.+++...++++.+|||||||+|..+..+++. + .+++|+|+++.             ...++.+|..++|+++++||
T Consensus        44 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD  122 (266)
T 3ujc_A           44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYG-AHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFD  122 (266)
T ss_dssp             HHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEE
T ss_pred             HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEE
Confidence            344455445678899999999999999888875 5 69999999841             12356899999999999999


Q ss_pred             EEEEcCceeecc--CChHHHHHHHHhcccCCcEEEEEe
Q 010086          171 FVFVGGARLEKA--SKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       171 ~V~s~~~~l~~~--~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +|++..+ ++|+  .++..+++++.|+|||||++++..
T Consensus       123 ~v~~~~~-l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          123 LIYSRDA-ILALSLENKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             EEEEESC-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeHHHH-HHhcChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            9999997 9999  788899999999999999998874

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.51  E-value=1.9e-14  Score=137.67  Aligned_cols=92  Identities=14%  Similarity=0.047  Sum_probs=79.4

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------CCcEEeccCCCCCCCCCceeEEEEcCceeeccC
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKAS  183 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~  183 (518)
                      .++.+|||||||+|..+..+++.+ .+++|+|+++.           ...++.+|++++ +++++||+|++..+ ++|++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~-l~~~~  117 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHV-LEHID  117 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTC-SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESC-GGGCS
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhC-CcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhH-HHhhc
Confidence            367899999999999999998876 58999999842           234567888887 68899999999998 99999


Q ss_pred             ChHHHHHHHH-hcccCCcEEEEEecCC
Q 010086          184 KPLDFASEIV-RTLKPEGFAVVHVRAK  209 (518)
Q Consensus       184 dp~~~l~Ei~-RVLKPGG~lvi~~~~~  209 (518)
                      +|..+++|+. |+|||||++++.+...
T Consensus       118 ~~~~~l~~~~~~~LkpgG~l~i~~~~~  144 (250)
T 2p7i_A          118 DPVALLKRINDDWLAEGGRLFLVCPNA  144 (250)
T ss_dssp             SHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             CHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence            9999999999 9999999999987543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.51  E-value=4.8e-14  Score=136.53  Aligned_cols=92  Identities=18%  Similarity=0.255  Sum_probs=81.4

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      -++++.+|||||||+|..+..+.+.+ .+++|+|+++.               ...++.+|++++||++++||+|++..+
T Consensus        18 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~   96 (239)
T 1xxl_A           18 ECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYA   96 (239)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CcCCCCEEEEEccCcCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCc
Confidence            46789999999999999999888876 69999999741               123568999999999999999999987


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                       ++|+.++..+++|+.|+|||||++++..
T Consensus        97 -l~~~~~~~~~l~~~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           97 -AHHFSDVRKAVREVARVLKQDGRFLLVD  124 (239)
T ss_dssp             -GGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -hhhccCHHHHHHHHHHHcCCCcEEEEEE
Confidence             9999999999999999999999998864

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.51  E-value=6.4e-14  Score=138.74  Aligned_cols=100  Identities=16%  Similarity=0.184  Sum_probs=83.1

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCC-CCCC
Q 010086          105 FQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIP-FDGN  167 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LP-f~D~  167 (518)
                      +..++... ..++.+|||||||+|..+..+++.| .+++|+|+++.                ...++.+|..++| ++++
T Consensus        58 l~~~l~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  135 (285)
T 4htf_A           58 LDRVLAEM-GPQKLRVLDAGGGEGQTAIKMAERG-HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET  135 (285)
T ss_dssp             HHHHHHHT-CSSCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred             HHHHHHhc-CCCCCEEEEeCCcchHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence            33444332 2346899999999999999998886 69999999841                1225689999998 8999


Q ss_pred             ceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          168 TFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       168 SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +||+|++..+ ++|++++..+++|+.|+|||||++++.+.
T Consensus       136 ~fD~v~~~~~-l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          136 PVDLILFHAV-LEWVADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             CEEEEEEESC-GGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CceEEEECch-hhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            9999999998 99999999999999999999999999864

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.50  E-value=7.5e-14  Score=138.87  Aligned_cols=92  Identities=25%  Similarity=0.314  Sum_probs=80.9

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      .+.++.+|||||||+|..+..+.+. | .+++|+|+++.                ...++.+|..++||++++||+|++.
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  157 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ  157 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEec
Confidence            4678899999999999999888775 6 59999999741                1235689999999999999999999


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .+ ++|++++..+++|+.|+|||||++++..
T Consensus       158 ~~-l~~~~~~~~~l~~~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          158 DA-FLHSPDKLKVFQECARVLKPRGVMAITD  187 (297)
T ss_dssp             SC-GGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ch-hhhcCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            98 9999999999999999999999998874

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.50  E-value=8e-14  Score=134.75  Aligned_cols=99  Identities=12%  Similarity=0.069  Sum_probs=81.8

Q ss_pred             HHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCCCceeEEE
Q 010086          107 DLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGNTFDFVF  173 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~SFD~V~  173 (518)
                      .+++.....++.+|||||||+|..+..+.+.+...++|+|+++.             ...++.+|..++|+++++||+|+
T Consensus        84 ~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~  163 (254)
T 1xtp_A           84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIV  163 (254)
T ss_dssp             HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEE
T ss_pred             HHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEE
Confidence            34444345678999999999999998888766568999999741             12346889999999999999999


Q ss_pred             EcCceeeccC--ChHHHHHHHHhcccCCcEEEEEe
Q 010086          174 VGGARLEKAS--KPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       174 s~~~~l~~~~--dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +..+ ++|++  ++..+++++.|+|||||++++..
T Consensus       164 ~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  197 (254)
T 1xtp_A          164 IQWT-AIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             EESC-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Ecch-hhhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            9997 99995  47789999999999999999876

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.50  E-value=8.9e-15  Score=153.29  Aligned_cols=131  Identities=11%  Similarity=0.138  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------CC----cEEeccCCCCCCCCC
Q 010086          101 YSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------KP----LVISGEGHRIPFDGN  167 (518)
Q Consensus       101 ~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------~~----l~~~~da~~LPf~D~  167 (518)
                      ...+.+.+++...++++.+|||||||+|..+..|++.| .+++|+|+|+.         ..    .+..++++.+||+++
T Consensus        92 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  170 (416)
T 4e2x_A           92 FAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAG-VRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEG  170 (416)
T ss_dssp             HHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTT-CEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcC-CcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCC
Confidence            34444555555556788999999999999999998887 59999999841         01    122456777889999


Q ss_pred             ceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecCC-----------------CccCchhHhhhcc--CccEEE
Q 010086          168 TFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAK-----------------DEYSFNSFLDLFN--SCKLVK  228 (518)
Q Consensus       168 SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~-----------------~~~s~~~~~~lf~--~~~~v~  228 (518)
                      +||+|++.++ |+|++++..+++|+.|+|||||++++.+...                 ..++...+..++.  .++++.
T Consensus       171 ~fD~I~~~~v-l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~  249 (416)
T 4e2x_A          171 PANVIYAANT-LCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVD  249 (416)
T ss_dssp             CEEEEEEESC-GGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEE
T ss_pred             CEEEEEECCh-HHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEE
Confidence            9999999998 9999999999999999999999999976321                 0134345555543  467777


Q ss_pred             EeccC
Q 010086          229 SRDID  233 (518)
Q Consensus       229 ~~~v~  233 (518)
                      +....
T Consensus       250 ~~~~~  254 (416)
T 4e2x_A          250 VQRLP  254 (416)
T ss_dssp             EEEEC
T ss_pred             EEEcc
Confidence            66643

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.50  E-value=7.7e-14  Score=131.59  Aligned_cols=92  Identities=25%  Similarity=0.293  Sum_probs=79.5

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------CCcEEeccCCCCCCCCCceeEEEEcCceeeccC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKAS  183 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~  183 (518)
                      +.++.+|||||||+|..+..+   +..+++|+|+++.          ...++.+|..++|+++++||+|++..+ ++|++
T Consensus        34 ~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~~  109 (211)
T 2gs9_A           34 LPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTT-LEFVE  109 (211)
T ss_dssp             CCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESC-TTTCS
T ss_pred             cCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcCh-hhhcC
Confidence            348899999999999988777   5448999999741          234678899999999999999999997 99999


Q ss_pred             ChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          184 KPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       184 dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      ++.++++|+.|+|||||.+++.+...
T Consensus       110 ~~~~~l~~~~~~L~pgG~l~i~~~~~  135 (211)
T 2gs9_A          110 DVERVLLEARRVLRPGGALVVGVLEA  135 (211)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             CHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            99999999999999999999986543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.50  E-value=5e-14  Score=135.25  Aligned_cols=93  Identities=25%  Similarity=0.427  Sum_probs=82.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------CCcEEeccCCCCCCCCCceeEEEEcCceeec
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------KPLVISGEGHRIPFDGNTFDFVFVGGARLEK  181 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~  181 (518)
                      ++++.+|||||||+|..+..+++.| .+++|+|+++.            ...++.+|..++|+++++||+|++..+ ++|
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~  128 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRTG-YKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINS-LEW  128 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESC-TTS
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcCh-Hhh
Confidence            5688999999999999999998887 59999999741            123568999999999999999999998 999


Q ss_pred             cCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          182 ASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       182 ~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      ++++..+++++.|+|||||++++.+..
T Consensus       129 ~~~~~~~l~~~~~~L~pgG~l~i~~~~  155 (242)
T 3l8d_A          129 TEEPLRALNEIKRVLKSDGYACIAILG  155 (242)
T ss_dssp             SSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ccCHHHHHHHHHHHhCCCeEEEEEEcC
Confidence            999999999999999999999998643

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.50  E-value=6.9e-14  Score=132.09  Aligned_cols=118  Identities=19%  Similarity=0.142  Sum_probs=94.7

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------CCcEEeccCCCCCCCCCceeEEEEcCceeeccC-
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKAS-  183 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~-  183 (518)
                      ++++.+|||||||+|..+..+++.| .+++|+|+++.         ...+..++...+| ++++||+|++..+ ++|+. 
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~-l~~~~~  117 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAAG-FDVDATDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVWAHAC-LLHVPR  117 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEEECSC-GGGSCH
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHcC-CeEEEECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEEecCc-hhhcCH
Confidence            5678999999999999999998876 59999999752         2345678999999 8999999999998 99998 


Q ss_pred             -ChHHHHHHHHhcccCCcEEEEEecCCCc------------cCchhHhhhcc--C-ccEEEEeccCC
Q 010086          184 -KPLDFASEIVRTLKPEGFAVVHVRAKDE------------YSFNSFLDLFN--S-CKLVKSRDIDG  234 (518)
Q Consensus       184 -dp~~~l~Ei~RVLKPGG~lvi~~~~~~~------------~s~~~~~~lf~--~-~~~v~~~~v~~  234 (518)
                       ++..+++++.|+|||||++++.+.....            ++...+..++.  . |+++.+....+
T Consensus       118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~  184 (211)
T 3e23_A          118 DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEG  184 (211)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccC
Confidence             6778999999999999999998643321            34455666665  4 88887765543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.50  E-value=5.2e-14  Score=132.13  Aligned_cols=103  Identities=17%  Similarity=0.162  Sum_probs=83.7

Q ss_pred             HHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCC
Q 010086          102 SSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFD  165 (518)
Q Consensus       102 ~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~  165 (518)
                      ..+.+.+.+...++++ +|||||||+|..+..+.+....+++|+|+++.                ...++.+|..++|++
T Consensus        30 ~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (219)
T 3dlc_A           30 PIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE  108 (219)
T ss_dssp             HHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred             HHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence            3344444443334555 99999999999998888763369999999741                123578999999999


Q ss_pred             CCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          166 GNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       166 D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +++||+|++..+ ++|+.++..+++++.|+|||||++++..
T Consensus       109 ~~~~D~v~~~~~-l~~~~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          109 DNYADLIVSRGS-VFFWEDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             TTCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccEEEECch-HhhccCHHHHHHHHHHhCCCCCEEEEEe
Confidence            999999999997 9999999999999999999999998874

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.49  E-value=1.4e-13  Score=134.80  Aligned_cols=117  Identities=21%  Similarity=0.313  Sum_probs=90.1

Q ss_pred             chhhccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------CCcE
Q 010086           84 SRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------KPLV  154 (518)
Q Consensus        84 ~~~~~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------~~l~  154 (518)
                      .|........|+...+.+..++..+     ++++.+|||||||+|..+..+++.| .+++|+|+++.         ...+
T Consensus        27 ~Yd~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~  100 (260)
T 2avn_A           27 AYDSMYETPKWKLYHRLIGSFLEEY-----LKNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGVKNV  100 (260)
T ss_dssp             HHGGGGCSHHHHHHHHHHHHHHHHH-----CCSCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHHTCSCE
T ss_pred             HHHHhccccchhHHHHHHHHHHHHh-----cCCCCeEEEeCCCcCHHHHHHHHcC-CeEEEEeCCHHHHHHHHhhcCCCE
Confidence            4556665666644333333333322     3478899999999999999998876 58999999741         1237


Q ss_pred             EeccCCCCCCCCCceeEEEEcCceeecc-CChHHHHHHHHhcccCCcEEEEEec
Q 010086          155 ISGEGHRIPFDGNTFDFVFVGGARLEKA-SKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       155 ~~~da~~LPf~D~SFD~V~s~~~~l~~~-~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +.+|+.++|+++++||+|++... +.|+ .++..+++|+.|+|||||++++.+.
T Consensus       101 ~~~d~~~~~~~~~~fD~v~~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  153 (260)
T 2avn_A          101 VEAKAEDLPFPSGAFEAVLALGD-VLSYVENKDKAFSEIRRVLVPDGLLIATVD  153 (260)
T ss_dssp             EECCTTSCCSCTTCEEEEEECSS-HHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECcHHHCCCCCCCEEEEEEcch-hhhccccHHHHHHHHHHHcCCCeEEEEEeC
Confidence            78999999999999999999875 5554 7899999999999999999998764

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.49  E-value=4.7e-14  Score=133.67  Aligned_cols=106  Identities=13%  Similarity=0.124  Sum_probs=86.4

Q ss_pred             HHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------CCcEEeccCCCC
Q 010086           94 WIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------KPLVISGEGHRI  162 (518)
Q Consensus        94 wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------~~l~~~~da~~L  162 (518)
                      |+.....+..+++.+.    ..++.+|||||||+|..+..+.+.+ .+++|+|+++.           ...++.+|+.++
T Consensus        27 ~~~~~~~~~~~l~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~  101 (220)
T 3hnr_A           27 YKEVFAHYEDILEDVV----NKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSF  101 (220)
T ss_dssp             TTTTTTTHHHHHHHHH----HTCCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSC
T ss_pred             HHHHHHHHHHHHHHhh----ccCCCeEEEeCCCCCHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhc
Confidence            3333334455555443    2478899999999999999998876 69999999741           245678999999


Q ss_pred             CCCCCceeEEEEcCceeeccCChHH--HHHHHHhcccCCcEEEEEe
Q 010086          163 PFDGNTFDFVFVGGARLEKASKPLD--FASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       163 Pf~D~SFD~V~s~~~~l~~~~dp~~--~l~Ei~RVLKPGG~lvi~~  206 (518)
                      |++ ++||+|++..+ ++|++++..  +++++.|+|||||.+++..
T Consensus       102 ~~~-~~fD~v~~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          102 EVP-TSIDTIVSTYA-FHHLTDDEKNVAIAKYSQLLNKGGKIVFAD  145 (220)
T ss_dssp             CCC-SCCSEEEEESC-GGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCC-CCeEEEEECcc-hhcCChHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            999 99999999998 999999877  9999999999999999874

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.49  E-value=6.3e-14  Score=139.28  Aligned_cols=91  Identities=15%  Similarity=0.196  Sum_probs=74.6

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-C--CCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEE
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-G--VEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVF  173 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g--~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~  173 (518)
                      .++++.+|||||||+|..+..|++. +  ..+|+|||+|+.                ...++++|+.++|++  .||+|+
T Consensus        67 ~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~  144 (261)
T 4gek_A           67 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVV  144 (261)
T ss_dssp             HCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEE
T ss_pred             hCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccce
Confidence            4789999999999999999888764 1  248999999841                123568999999885  499999


Q ss_pred             EcCceeeccCChH--HHHHHHHhcccCCcEEEEEe
Q 010086          174 VGGARLEKASKPL--DFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       174 s~~~~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +..+ ++|++++.  .+++|++|+|||||++++..
T Consensus       145 ~~~~-l~~~~~~~~~~~l~~i~~~LkpGG~lii~e  178 (261)
T 4gek_A          145 LNFT-LQFLEPSERQALLDKIYQGLNPGGALVLSE  178 (261)
T ss_dssp             EESC-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeee-eeecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence            9987 99987554  68999999999999998863

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.48  E-value=1.5e-13  Score=133.17  Aligned_cols=92  Identities=22%  Similarity=0.224  Sum_probs=80.3

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C--CcEEeccCCCCCCCCCceeEEEEcC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K--PLVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~--~l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      .++++.+|||||||+|..+..+++.+..+++|+|+++.              .  ..++.+|+.++|+++++||+|++..
T Consensus        43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  122 (257)
T 3f4k_A           43 ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG  122 (257)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence            35778899999999999998888875459999999841              1  3357899999999999999999999


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      + ++|+ ++..+++++.|+|||||++++..
T Consensus       123 ~-l~~~-~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          123 A-IYNI-GFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             C-SCCC-CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             h-Hhhc-CHHHHHHHHHHHcCCCcEEEEEE
Confidence            8 9998 79999999999999999998874

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.48  E-value=2.1e-13  Score=126.49  Aligned_cols=115  Identities=16%  Similarity=0.207  Sum_probs=92.1

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      .++.+|||+|||+|..+..+++.| .+++|+|+++.               ...++.+|..++|+ +++||+|++..+ +
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~-l  107 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVV-L  107 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESC-G
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcch-h
Confidence            467899999999999998888876 59999999741               22356889999999 899999999997 9


Q ss_pred             eccC--ChHHHHHHHHhcccCCcEEEEEec-C-CC---------ccCchhHhhhccCccEEEEecc
Q 010086          180 EKAS--KPLDFASEIVRTLKPEGFAVVHVR-A-KD---------EYSFNSFLDLFNSCKLVKSRDI  232 (518)
Q Consensus       180 ~~~~--dp~~~l~Ei~RVLKPGG~lvi~~~-~-~~---------~~s~~~~~~lf~~~~~v~~~~v  232 (518)
                      +|++  ++..+++++.|+|||||.+++... . .+         .++...+.++|..++++.....
T Consensus       108 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~~~  173 (199)
T 2xvm_A          108 MFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVKYNED  173 (199)
T ss_dssp             GGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTTSEEEEEECC
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcCCeEEEeccc
Confidence            9987  678899999999999999776532 1 11         2355667788888888887653

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.48  E-value=1.9e-13  Score=134.06  Aligned_cols=91  Identities=19%  Similarity=0.191  Sum_probs=80.5

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------C-CcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------K-PLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~-~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      ++++.+|||||||+|..+..+++.+..+++|+|+++.               + ..++.+|..++|+++++||+|++..+
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~  123 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA  123 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCC
Confidence            5788999999999999999988876569999999842               1 33578999999999999999999998


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                       ++|+ ++..+++++.|+|||||++++..
T Consensus       124 -~~~~-~~~~~l~~~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          124 -IYNI-GFERGLNEWRKYLKKGGYLAVSE  150 (267)
T ss_dssp             -GGGT-CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             -ceec-CHHHHHHHHHHHcCCCCEEEEEE
Confidence             9998 89999999999999999998874

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.47  E-value=1.5e-13  Score=134.93  Aligned_cols=91  Identities=15%  Similarity=0.079  Sum_probs=79.5

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------CCcEEeccCCCCCCCCCceeEEEEcCceeeccCC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASK  184 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~d  184 (518)
                      +.++.+|||||||+|..+..+++.+ .+|+|+|+|+.         ...++.+|++++||++++||+|++..+ ++|+.+
T Consensus        32 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~~~  109 (261)
T 3ege_A           32 LPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILA-IHHFSH  109 (261)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESC-GGGCSS
T ss_pred             CCCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcch-HhhccC
Confidence            5688999999999999999998866 69999999841         123568999999999999999999998 999999


Q ss_pred             hHHHHHHHHhcccCCcEEEEEec
Q 010086          185 PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       185 p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +..+++|+.|+|| ||.+++...
T Consensus       110 ~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A          110 LEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             HHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             HHHHHHHHHHHhC-CcEEEEEEc
Confidence            9999999999999 997776643

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.47  E-value=9.1e-14  Score=136.64  Aligned_cols=96  Identities=21%  Similarity=0.272  Sum_probs=82.7

Q ss_pred             HcCCCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEE
Q 010086          110 SEGYLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVF  173 (518)
Q Consensus       110 ~~gll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~  173 (518)
                      ....++++.+|||||||+|..+..+.+.+ ..+++|+|+++.               ...++.+|..++|+++++||+|+
T Consensus        31 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~  110 (276)
T 3mgg_A           31 HDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIF  110 (276)
T ss_dssp             TTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEE
T ss_pred             hcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEE
Confidence            34456789999999999999998888763 369999999741               12356889999999999999999


Q ss_pred             EcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +..+ ++|++++..+++++.|+|||||++++..
T Consensus       111 ~~~~-l~~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          111 VCFV-LEHLQSPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             EESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Eech-hhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            9998 9999999999999999999999998875

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.47  E-value=1.7e-13  Score=135.41  Aligned_cols=118  Identities=14%  Similarity=0.148  Sum_probs=89.4

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC---------CC-----------------------CcEEeccCCC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS---------SK-----------------------PLVISGEGHR  161 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~---------~~-----------------------~l~~~~da~~  161 (518)
                      ++++.+|||+|||+|..+..|++.| .+|+|||+|+         ..                       ..++++|+.+
T Consensus        66 ~~~~~~vLD~GCG~G~~~~~La~~G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           66 GQSGLRVFFPLCGKAIEMKWFADRG-HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTT-CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCCeEEEeCCCCcHHHHHHHHCC-CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            3578899999999999999999988 4999999983         11                       1246899999


Q ss_pred             CCCCC-CceeEEEEcCceeeccCCh--HHHHHHHHhcccCCcEEEEE-ecCC------C--ccCchhHhhhcc-CccEEE
Q 010086          162 IPFDG-NTFDFVFVGGARLEKASKP--LDFASEIVRTLKPEGFAVVH-VRAK------D--EYSFNSFLDLFN-SCKLVK  228 (518)
Q Consensus       162 LPf~D-~SFD~V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~-~~~~------~--~~s~~~~~~lf~-~~~~v~  228 (518)
                      +|+++ ++||+|++..+ |+|++.+  ..+++++.|+|||||++++. +...      .  .++...+..+|. .|+++.
T Consensus       145 l~~~~~~~FD~V~~~~~-l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~~f~v~~  223 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGA-LVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGTKCSMQC  223 (252)
T ss_dssp             GGGGCCCCEEEEEESSS-TTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTTTEEEEE
T ss_pred             CCcccCCCEEEEEEhhh-hhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhCCeEEEE
Confidence            99875 89999999887 8888643  46899999999999998643 3211      1  134455666765 477776


Q ss_pred             EeccC
Q 010086          229 SRDID  233 (518)
Q Consensus       229 ~~~v~  233 (518)
                      ....+
T Consensus       224 ~~~~~  228 (252)
T 2gb4_A          224 LEEVD  228 (252)
T ss_dssp             EEEEE
T ss_pred             Eeccc
Confidence            66544

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.46  E-value=5.2e-14  Score=135.96  Aligned_cols=94  Identities=18%  Similarity=0.217  Sum_probs=80.1

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------CCcEEeccCCCC--CCCCCceeEEEEcCceeeccC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------KPLVISGEGHRI--PFDGNTFDFVFVGGARLEKAS  183 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------~~l~~~~da~~L--Pf~D~SFD~V~s~~~~l~~~~  183 (518)
                      .++++.+|||||||+|..+..+++.| .+++|+|+++.       ...++.+|..++  ||++++||+|+|..+ ++|+.
T Consensus        38 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~~~~-l~~~~  115 (240)
T 3dli_A           38 YFKGCRRVLDIGCGRGEFLELCKEEG-IESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISHF-VEHLD  115 (240)
T ss_dssp             GTTTCSCEEEETCTTTHHHHHHHHHT-CCEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEEESC-GGGSC
T ss_pred             hhcCCCeEEEEeCCCCHHHHHHHhCC-CcEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEECCc-hhhCC
Confidence            35678999999999999999888877 58999999842       134567777775  899999999999998 99999


Q ss_pred             Ch--HHHHHHHHhcccCCcEEEEEecC
Q 010086          184 KP--LDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       184 dp--~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      ++  ..+++++.|+|||||++++.+..
T Consensus       116 ~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A          116 PERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             GGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             cHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            66  89999999999999999998654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.46  E-value=3.3e-13  Score=128.22  Aligned_cols=91  Identities=21%  Similarity=0.310  Sum_probs=79.9

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------C---------CcEEeccCCCCCCCCCceeEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------K---------PLVISGEGHRIPFDGNTFDFVF  173 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------~---------~l~~~~da~~LPf~D~SFD~V~  173 (518)
                      ++++.+|||||||+|..+..+++.| .+++|+|+++.           .         ..+..+|...+|+++++||+|+
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  106 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASKG-YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV  106 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence            5688999999999999999888886 59999999741           1         1356889999999999999999


Q ss_pred             EcCceeeccCChH---HHHHHHHhcccCCcEEEEEe
Q 010086          174 VGGARLEKASKPL---DFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       174 s~~~~l~~~~dp~---~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +..+ ++|++++.   .+++++.|+|||||++++..
T Consensus       107 ~~~~-l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A          107 MQAF-LTSVPDPKERSRIIKEVFRVLKPGAYLYLVE  141 (235)
T ss_dssp             EESC-GGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Ecch-hhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            9997 99999998   89999999999999998874

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.45  E-value=1.2e-13  Score=138.02  Aligned_cols=91  Identities=12%  Similarity=0.075  Sum_probs=78.4

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHh--cCCCcEEEEecCCC-----------------CCcEEeccCCCCCCCC------Cc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKE--IGVEDSIGIFKKSS-----------------KPLVISGEGHRIPFDG------NT  168 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~--~g~~~v~gID~s~~-----------------~~l~~~~da~~LPf~D------~S  168 (518)
                      ..++.+|||||||+|..+..|++  .+..+|+|+|+++.                 ...++++|++++|+++      ++
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  113 (299)
T 3g5t_A           34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK  113 (299)
T ss_dssp             CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence            46789999999999999988885  24579999999741                 1235689999999988      99


Q ss_pred             eeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          169 FDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ||+|++..+ +||+ ++..+++++.|+|||||++++..
T Consensus       114 fD~V~~~~~-l~~~-~~~~~l~~~~~~LkpgG~l~i~~  149 (299)
T 3g5t_A          114 IDMITAVEC-AHWF-DFEKFQRSAYANLRKDGTIAIWG  149 (299)
T ss_dssp             EEEEEEESC-GGGS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEeHhhH-HHHh-CHHHHHHHHHHhcCCCcEEEEEe
Confidence            999999997 9999 99999999999999999998843

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.45  E-value=3e-13  Score=129.62  Aligned_cols=93  Identities=13%  Similarity=0.135  Sum_probs=81.2

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------CCcEEeccCCCCCCCCCceeEEEEcCceeec
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------KPLVISGEGHRIPFDGNTFDFVFVGGARLEK  181 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~  181 (518)
                      ..++.+|||||||+|..+..+.+.|..+++|+|+++.            ...++.+|..++|+++++||+|++..+ ++|
T Consensus        41 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~  119 (243)
T 3bkw_A           41 EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLA-LHY  119 (243)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESC-GGG
T ss_pred             ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEecc-ccc
Confidence            3478899999999999999888887559999999741            123568899999999999999999997 999


Q ss_pred             cCChHHHHHHHHhcccCCcEEEEEec
Q 010086          182 ASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       182 ~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++++..+++++.|+|||||++++.+.
T Consensus       120 ~~~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A          120 VEDVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cchHHHHHHHHHHhcCcCcEEEEEeC
Confidence            99999999999999999999999764

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.45  E-value=3.9e-13  Score=126.50  Aligned_cols=92  Identities=11%  Similarity=0.041  Sum_probs=79.4

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------CCcEEeccCCCCCCCCCceeEEEEcCceeecc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKA  182 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~  182 (518)
                      ++++.+|||||||+|..+..+++.| .+++|+|+++.           ...++.+|..++ +++++||+|++..+ ++|+
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~-l~~~  120 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHW-LAHV  120 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESC-GGGS
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEech-hhcC
Confidence            5678899999999999999888876 69999999741           123568899888 89999999999997 9999


Q ss_pred             CCh--HHHHHHHHhcccCCcEEEEEecC
Q 010086          183 SKP--LDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       183 ~dp--~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +++  ..+++++.|+|||||.+++....
T Consensus       121 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          121 PDDRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            987  78999999999999999987643

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.44  E-value=3.7e-13  Score=130.05  Aligned_cols=121  Identities=8%  Similarity=0.088  Sum_probs=91.6

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------C------CcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------K------PLVISGEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------~------~l~~~~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      +++.+|||||||+|..+..+.+.+..+++|+|+++.         .      ..++.+|..++|+++++||+|++..+ +
T Consensus        78 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l  156 (241)
T 2ex4_A           78 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV-I  156 (241)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC-G
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcch-h
Confidence            358899999999999998887766569999999741         1      22568899999999999999999997 9


Q ss_pred             eccCChH--HHHHHHHhcccCCcEEEEEecCCC------------ccCchhHhhhcc--CccEEEEeccCCCC
Q 010086          180 EKASKPL--DFASEIVRTLKPEGFAVVHVRAKD------------EYSFNSFLDLFN--SCKLVKSRDIDGID  236 (518)
Q Consensus       180 ~~~~dp~--~~l~Ei~RVLKPGG~lvi~~~~~~------------~~s~~~~~~lf~--~~~~v~~~~v~~~~  236 (518)
                      +|++++.  .+++++.|+|||||++++......            ..+...+..++.  .|+++......+|.
T Consensus       157 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~  229 (241)
T 2ex4_A          157 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLP  229 (241)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSCC
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeecCCCc
Confidence            9998865  899999999999999988642111            013344555543  46777766655443

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.44  E-value=4.3e-13  Score=135.19  Aligned_cols=97  Identities=15%  Similarity=0.043  Sum_probs=81.9

Q ss_pred             HHHHcCC-CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCc
Q 010086          107 DLISEGY-LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNT  168 (518)
Q Consensus       107 ~L~~~gl-l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~S  168 (518)
                      .+++... ++++.+|||||||+|..+..+++. | .+|+|+|+++.                ...++.+|+.++||++++
T Consensus       107 ~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  185 (312)
T 3vc1_A          107 FLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG-SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGA  185 (312)
T ss_dssp             HHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred             HHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCC
Confidence            3444333 678899999999999999888876 6 68999999741                133578999999999999


Q ss_pred             eeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          169 FDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ||+|++..+ ++|+ ++..+++++.|+|||||++++..
T Consensus       186 fD~V~~~~~-l~~~-~~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          186 VTASWNNES-TMYV-DLHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             EEEEEEESC-GGGS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeEEEECCc-hhhC-CHHHHHHHHHHHcCCCcEEEEEE
Confidence            999999997 9998 69999999999999999998875

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.43  E-value=4.8e-13  Score=125.53  Aligned_cols=92  Identities=22%  Similarity=0.285  Sum_probs=77.1

Q ss_pred             CCCCCeEEEEcCCCCHh-HHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          114 LSQSAKSLCVETQYGQD-VFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~-~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      +.++.+|||+|||+|.. ...+++.| .+++|+|+++.              ...++.+|+.++|+++++||+|++..+ 
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-   98 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDG-YKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGT-   98 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTT-CEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSC-
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcCh-
Confidence            45788999999999997 45556666 59999999741              234678999999999999999999987 


Q ss_pred             eecc--CChHHHHHHHHhcccCCcEEEEEec
Q 010086          179 LEKA--SKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       179 l~~~--~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++|+  .++.++++++.|+|||||++++...
T Consensus        99 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  129 (209)
T 2p8j_A           99 IFHMRKNDVKEAIDEIKRVLKPGGLACINFL  129 (209)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9998  5678899999999999999998753

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.43  E-value=4.3e-13  Score=128.41  Aligned_cols=104  Identities=13%  Similarity=0.071  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHcC-CCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC-------------CCcEEeccCCCCCCC
Q 010086          101 YSSVFQDLISEG-YLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS-------------KPLVISGEGHRIPFD  165 (518)
Q Consensus       101 ~~~l~~~L~~~g-ll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~-------------~~l~~~~da~~LPf~  165 (518)
                      +....+.+...- ...++.+|||||||+|..+..+.+.. ..+++|+|+++.             ...++.+|..++|++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~  107 (234)
T 3dtn_A           28 FDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE  107 (234)
T ss_dssp             HHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC
T ss_pred             HHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC
Confidence            344444444332 24578899999999999998888763 369999999741             123578999999998


Q ss_pred             CCceeEEEEcCceeeccCChH--HHHHHHHhcccCCcEEEEEe
Q 010086          166 GNTFDFVFVGGARLEKASKPL--DFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       166 D~SFD~V~s~~~~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~~  206 (518)
                       ++||+|++..+ ++|++++.  .+++++.|+|||||++++..
T Consensus       108 -~~fD~v~~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          108 -EKYDMVVSALS-IHHLEDEDKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             -SCEEEEEEESC-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CCceEEEEeCc-cccCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence             99999999997 99998776  48999999999999999875

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.42  E-value=4.3e-13  Score=131.06  Aligned_cols=107  Identities=14%  Similarity=0.153  Sum_probs=84.0

Q ss_pred             hhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------CCcEEeccCCC
Q 010086           92 KEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------KPLVISGEGHR  161 (518)
Q Consensus        92 ~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------~~l~~~~da~~  161 (518)
                      ..|+...+.+..++...     ++++.+|||||||+|..+..+.+.+ .+++|+|+++.          ...++.+|+.+
T Consensus        31 ~~~~~~~~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~  104 (263)
T 3pfg_A           31 KDYHREAADLAALVRRH-----SPKAASLLDVACGTGMHLRHLADSF-GTVEGLELSADMLAIARRRNPDAVLHHGDMRD  104 (263)
T ss_dssp             CCHHHHHHHHHHHHHHH-----CTTCCEEEEETCTTSHHHHHHTTTS-SEEEEEESCHHHHHHHHHHCTTSEEEECCTTT
T ss_pred             CCHHHHHHHHHHHHHhh-----CCCCCcEEEeCCcCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCCCEEEECChHH
Confidence            44555444433333222     4567899999999999999998876 68999999741          23467899999


Q ss_pred             CCCCCCceeEEEEcC-ceeeccC---ChHHHHHHHHhcccCCcEEEEEe
Q 010086          162 IPFDGNTFDFVFVGG-ARLEKAS---KPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       162 LPf~D~SFD~V~s~~-~~l~~~~---dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +|+ +++||+|++.. + ++|+.   ++..+++++.|+|||||++++..
T Consensus       105 ~~~-~~~fD~v~~~~~~-l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          105 FSL-GRRFSAVTCMFSS-IGHLAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             CCC-SCCEEEEEECTTG-GGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CCc-cCCcCEEEEcCch-hhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            998 89999999997 7 99996   44578999999999999999974

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.42  E-value=2.6e-13  Score=128.89  Aligned_cols=91  Identities=13%  Similarity=0.033  Sum_probs=77.0

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCC-CcEEEEecCCC--------------------CCcEEeccCCCCCCCCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGV-EDSIGIFKKSS--------------------KPLVISGEGHRIPFDGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~-~~v~gID~s~~--------------------~~l~~~~da~~LPf~D~SFD~V~  173 (518)
                      .++.+|||||||+|..+..+++.+. .+++|+|+++.                    ...++.+|...+|+++++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  107 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT  107 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence            4678999999999999999987653 69999999841                    22356889989999999999999


Q ss_pred             EcCceeeccCCh--HHHHHHHHhcccCCcEEEEEe
Q 010086          174 VGGARLEKASKP--LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       174 s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +..+ ++|++++  .++++++.|+|||||+++...
T Consensus       108 ~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A          108 VIEV-IEHLDENRLQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             EESC-GGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             EHHH-HHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence            9998 9999877  689999999999999766654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.41  E-value=2.6e-13  Score=128.90  Aligned_cols=91  Identities=14%  Similarity=0.058  Sum_probs=76.9

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC--------------------CCcEEeccCCCCCCCCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS--------------------KPLVISGEGHRIPFDGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~--------------------~~l~~~~da~~LPf~D~SFD~V~  173 (518)
                      .++.+|||||||+|..+..+++.+ ..+++|+|+++.                    ...++.+|...+++++++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  107 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT  107 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence            467899999999999999998864 369999999741                    12356788888888899999999


Q ss_pred             EcCceeeccCCh--HHHHHHHHhcccCCcEEEEEe
Q 010086          174 VGGARLEKASKP--LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       174 s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +..+ ++|++++  ..+++++.|+|||||++++..
T Consensus       108 ~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A          108 VIEV-IEHLDLSRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             EESC-GGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             eHHH-HHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            9998 9999877  789999999999999776654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.40  E-value=5.1e-13  Score=126.26  Aligned_cols=92  Identities=22%  Similarity=0.306  Sum_probs=80.2

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------CCcEEeccCCC--CCCCCCceeEEEEcCceeeccCC
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------KPLVISGEGHR--IPFDGNTFDFVFVGGARLEKASK  184 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------~~l~~~~da~~--LPf~D~SFD~V~s~~~~l~~~~d  184 (518)
                      .++.+|||||||+|..+..+.+.| .+++|+|+++.        ...+..+|..+  +|+++++||+|++..+ ++|+++
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~-l~~~~~  108 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDV-LEHLFD  108 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESC-GGGSSC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECCh-hhhcCC
Confidence            578899999999999998888776 79999999741        23456788776  7899999999999997 999999


Q ss_pred             hHHHHHHHHhcccCCcEEEEEecC
Q 010086          185 PLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       185 p~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +..+++++.|+|||||.+++.+..
T Consensus       109 ~~~~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A          109 PWAVIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             HHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCEEEEEeCC
Confidence            999999999999999999998654

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.40  E-value=7.7e-13  Score=125.13  Aligned_cols=90  Identities=14%  Similarity=0.068  Sum_probs=77.5

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGNTFDFVFVGGARLE  180 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~  180 (518)
                      ..++.+|||||||+|..+..+.+.+ .+++|+|+++.             ...++.+|+.+++ ++++||+|++..+ ++
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~-l~  125 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEV-LY  125 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESC-GG
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccH-HH
Confidence            4567899999999999999998876 69999999741             1235689999998 7899999999998 99


Q ss_pred             ccCChH---HHHHHHHhcccCCcEEEEEe
Q 010086          181 KASKPL---DFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       181 ~~~dp~---~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      |+.++.   ++++++.|+|||||++++.+
T Consensus       126 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          126 YLEDMTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             GSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            999884   67999999999999999875

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.40  E-value=6.7e-13  Score=124.40  Aligned_cols=94  Identities=19%  Similarity=0.186  Sum_probs=79.4

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGNTFDFVFVGGARLE  180 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~  180 (518)
                      ++++.+|||+|||+|..+..+.+.|..+++|+|+++.             ...++.+|+.++|+++++||+|++... ++
T Consensus        40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~-~~  118 (215)
T 2pxx_A           40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGT-LD  118 (215)
T ss_dssp             CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESH-HH
T ss_pred             cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcc-hh
Confidence            4788999999999999998888877569999999741             234578999999999999999999886 76


Q ss_pred             ccC---------------ChHHHHHHHHhcccCCcEEEEEecC
Q 010086          181 KAS---------------KPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       181 ~~~---------------dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      ++.               ++.++++++.|+|||||++++....
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  161 (215)
T 2pxx_A          119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA  161 (215)
T ss_dssp             HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence            654               5578999999999999999987643

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.39  E-value=4e-12  Score=119.88  Aligned_cols=90  Identities=18%  Similarity=0.186  Sum_probs=74.2

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------CCcEEeccCCCC---CCCCC-ceeEEEEcCceeec
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------KPLVISGEGHRI---PFDGN-TFDFVFVGGARLEK  181 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------~~l~~~~da~~L---Pf~D~-SFD~V~s~~~~l~~  181 (518)
                      .++.+|||||||+|..+..+++.| .+++|+|+++.         ...+..++..++   |+.++ +||+|++..+ ++ 
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~-l~-  127 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRG-IEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFA-LL-  127 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESC-CC-
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCC-CEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECch-hh-
Confidence            456899999999999999998886 58999999842         233556666665   66555 5999999987 87 


Q ss_pred             cCChHHHHHHHHhcccCCcEEEEEec
Q 010086          182 ASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       182 ~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ..++..+++++.|+|||||++++...
T Consensus       128 ~~~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          128 HQDIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence            78899999999999999999999864

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.39  E-value=3.6e-12  Score=117.13  Aligned_cols=116  Identities=19%  Similarity=0.210  Sum_probs=91.9

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------CCcEEeccCCCCCCCCCceeEEEEc-Cceeecc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------KPLVISGEGHRIPFDGNTFDFVFVG-GARLEKA  182 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------~~l~~~~da~~LPf~D~SFD~V~s~-~~~l~~~  182 (518)
                      ++++.+|||||||+|..+..+.+.+ .+++|+|+++.          ...++.+|..++|+++++||+|++. .. ++|+
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~-~~~~  121 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNV-MGFL  121 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCC-GGGS
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHCC-CcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcH-Hhhc
Confidence            5788999999999999998888876 69999999741          2346788999999999999999998 55 7877


Q ss_pred             CC--hHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhcc--CccEEEEec
Q 010086          183 SK--PLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFN--SCKLVKSRD  231 (518)
Q Consensus       183 ~d--p~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~--~~~~v~~~~  231 (518)
                      ..  +..+++++.|+|||||++++.......++...+..++.  .++++....
T Consensus       122 ~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  174 (195)
T 3cgg_A          122 AEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFE  174 (195)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEES
T ss_pred             ChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeec
Confidence            43  36899999999999999999876555555566665543  466666544

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.39  E-value=6.2e-13  Score=138.53  Aligned_cols=92  Identities=17%  Similarity=0.182  Sum_probs=78.7

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC-----------------------CCcEEeccCCCC------
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS-----------------------KPLVISGEGHRI------  162 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~-----------------------~~l~~~~da~~L------  162 (518)
                      +.++.+|||||||+|..+..+++.  ...+|+|+|+++.                       ...++.+|++++      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            457889999999999999887764  2359999999741                       123568898887      


Q ss_pred             CCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          163 PFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       163 Pf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ||++++||+|++..+ ++|++++..+++|+.|+|||||++++..
T Consensus       161 ~~~~~~fD~V~~~~~-l~~~~d~~~~l~~~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          161 GVPDSSVDIVISNCV-CNLSTNKLALFKEIHRVLRDGGELYFSD  203 (383)
T ss_dssp             CCCTTCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEccc-hhcCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            999999999999998 9999999999999999999999998863

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.39  E-value=3.7e-13  Score=133.40  Aligned_cols=92  Identities=18%  Similarity=0.183  Sum_probs=79.1

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------------CCcEEeccCCCCC---CCCCceeEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------------KPLVISGEGHRIP---FDGNTFDFV  172 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------------~~l~~~~da~~LP---f~D~SFD~V  172 (518)
                      .++.+|||||||+|..+..|++.| .+|+|+|+|+.                   ...+..++..++|   |++++||+|
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V  134 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEG-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV  134 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEE
Confidence            467899999999999999998887 49999999841                   0124578888888   999999999


Q ss_pred             EEc-CceeeccCC-------hHHHHHHHHhcccCCcEEEEEecC
Q 010086          173 FVG-GARLEKASK-------PLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       173 ~s~-~~~l~~~~d-------p~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +|. .+ ++|+.+       +.++++++.|+|||||++++.+..
T Consensus       135 ~~~g~~-l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          135 ICLGNS-FAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             EECTTC-GGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EEcChH-HhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            998 66 999999       889999999999999999998643

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.38  E-value=7.7e-13  Score=130.60  Aligned_cols=95  Identities=16%  Similarity=0.226  Sum_probs=79.8

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------C-----CcEEeccCCCCCC-CCCceeEEEEc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------K-----PLVISGEGHRIPF-DGNTFDFVFVG  175 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------~-----~l~~~~da~~LPf-~D~SFD~V~s~  175 (518)
                      +++++.+|||||||+|..+..+++.|..+++|+|+++.           .     ..++.+|+.++|+ ++++||+|++.
T Consensus        61 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  140 (298)
T 1ri5_A           61 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  140 (298)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             hCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence            36788999999999999998888777669999999741           1     2356889999999 69999999999


Q ss_pred             Cceeec----cCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          176 GARLEK----ASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       176 ~~~l~~----~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      .+ +||    ..++..+++++.|+|||||++++.+..
T Consensus       141 ~~-l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          141 FS-FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             SC-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ch-hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            87 876    456778999999999999999998743

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.38  E-value=2.8e-13  Score=135.23  Aligned_cols=93  Identities=9%  Similarity=-0.065  Sum_probs=69.4

Q ss_pred             CCCCCeEEEEcCCCCHhHH----HHHhc-CCCc--EEEEecCCC------------C--Cc----EEeccCCCCC-----
Q 010086          114 LSQSAKSLCVETQYGQDVF----ALKEI-GVED--SIGIFKKSS------------K--PL----VISGEGHRIP-----  163 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~----~L~~~-g~~~--v~gID~s~~------------~--~l----~~~~da~~LP-----  163 (518)
                      ..++.+|||||||+|..+.    .+... +...  ++|+|+|+.            .  ..    +..+++++++     
T Consensus        50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (292)
T 2aot_A           50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE  129 (292)
T ss_dssp             TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence            3567899999999997653    23222 2233  499998731            1  11    1244555543     


Q ss_pred             -CCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          164 -FDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       164 -f~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                       |++++||+|++..+ +||++||.++++|++|+|||||++++...
T Consensus       130 ~~~~~~fD~V~~~~~-l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  173 (292)
T 2aot_A          130 KKELQKWDFIHMIQM-LYYVKDIPATLKFFHSLLGTNAKMLIIVV  173 (292)
T ss_dssp             TTCCCCEEEEEEESC-GGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccCCCceeEEEEeee-eeecCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence             78999999999998 99999999999999999999999998754

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.38  E-value=1.5e-12  Score=125.03  Aligned_cols=126  Identities=16%  Similarity=0.177  Sum_probs=92.8

Q ss_pred             HHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------C-------CcEEeccCCCCCCCCC
Q 010086          104 VFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------K-------PLVISGEGHRIPFDGN  167 (518)
Q Consensus       104 l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------~-------~l~~~~da~~LPf~D~  167 (518)
                      .+..++....+++ .+|||||||+|..+..|++.| .+++|+|+++.         .       ..++.+|..+++ +++
T Consensus        55 ~l~~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~  131 (235)
T 3lcc_A           55 LIVHLVDTSSLPL-GRALVPGCGGGHDVVAMASPE-RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTE  131 (235)
T ss_dssp             HHHHHHHTTCSCC-EEEEEETCTTCHHHHHHCBTT-EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSS
T ss_pred             HHHHHHHhcCCCC-CCEEEeCCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCC
Confidence            3344444444444 599999999999999888766 68999999841         1       235688998877 566


Q ss_pred             ceeEEEEcCceeeccC--ChHHHHHHHHhcccCCcEEEEEecCCC--------ccCchhHhhhcc--CccEEEEeccC
Q 010086          168 TFDFVFVGGARLEKAS--KPLDFASEIVRTLKPEGFAVVHVRAKD--------EYSFNSFLDLFN--SCKLVKSRDID  233 (518)
Q Consensus       168 SFD~V~s~~~~l~~~~--dp~~~l~Ei~RVLKPGG~lvi~~~~~~--------~~s~~~~~~lf~--~~~~v~~~~v~  233 (518)
                      +||+|++..+ ++|++  ++..+++++.|+|||||++++......        .++...+..++.  .|+++.+..+.
T Consensus       132 ~fD~v~~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  208 (235)
T 3lcc_A          132 LFDLIFDYVF-FCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENP  208 (235)
T ss_dssp             CEEEEEEESS-TTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECT
T ss_pred             CeeEEEEChh-hhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecC
Confidence            9999999987 99998  778999999999999999988643211        134455666665  36777776543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.37  E-value=1.5e-12  Score=128.96  Aligned_cols=113  Identities=10%  Similarity=0.173  Sum_probs=90.4

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCceeec
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARLEK  181 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~  181 (518)
                      ++.+|||+|||+|..+..|++.| .+|+|+|+++.              ...+..+|..++++ +++||+|++..+ ++|
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~-~~~  196 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLG-YDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVV-FMF  196 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSS-GGG
T ss_pred             CCCcEEEECCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccc-hhh
Confidence            78899999999999999998887 59999999841              22356889999888 899999999997 999


Q ss_pred             cCChH--HHHHHHHhcccCCcEEEEEec--CCC---------ccCchhHhhhccCccEEEEec
Q 010086          182 ASKPL--DFASEIVRTLKPEGFAVVHVR--AKD---------EYSFNSFLDLFNSCKLVKSRD  231 (518)
Q Consensus       182 ~~dp~--~~l~Ei~RVLKPGG~lvi~~~--~~~---------~~s~~~~~~lf~~~~~v~~~~  231 (518)
                      +.++.  .+++++.|+|||||++++...  ..+         .++...+..+|..++++....
T Consensus       197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  259 (286)
T 3m70_A          197 LNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKDWEFLEYNE  259 (286)
T ss_dssp             SCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTTSEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcCCEEEEEEc
Confidence            86654  899999999999999777532  111         134456777888888888754

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.37  E-value=2e-12  Score=129.32  Aligned_cols=97  Identities=13%  Similarity=0.104  Sum_probs=79.8

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCc
Q 010086          106 QDLISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNT  168 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~S  168 (518)
                      +.+++...++++.+|||||||+|..+..+++. | .+|+|+|+|+.                ...++.+|..++   +++
T Consensus        62 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~  137 (302)
T 3hem_A           62 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEP  137 (302)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCC
T ss_pred             HHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCC
Confidence            34445545788999999999999999888876 7 79999999841                122567888765   899


Q ss_pred             eeEEEEcCceeeccCCh---------HHHHHHHHhcccCCcEEEEEec
Q 010086          169 FDFVFVGGARLEKASKP---------LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp---------~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ||+|++..+ ++|+++|         ..+++++.|+|||||++++...
T Consensus       138 fD~v~~~~~-~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  184 (302)
T 3hem_A          138 VDRIVSLGA-FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  184 (302)
T ss_dssp             CSEEEEESC-GGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred             ccEEEEcch-HHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence            999999998 9999887         6899999999999999998753

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.37  E-value=1.7e-13  Score=135.05  Aligned_cols=104  Identities=16%  Similarity=0.018  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------C-C---------------
Q 010086          101 YSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------K-P---------------  152 (518)
Q Consensus       101 ~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~-~---------------  152 (518)
                      ....++.+...+ ..++.+|||||||+|..+..++..|..+|+|+|+|+.            + .               
T Consensus        41 ~~~~~~~~~~~~-~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~  119 (263)
T 2a14_A           41 NLECLHKTFGPG-GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEG  119 (263)
T ss_dssp             HHHHHHHHHSTT-SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCC-CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCC
Confidence            333444444333 3577899999999998776666677668999999841            0 0               


Q ss_pred             -----------------cEEeccCCC-CCCC---CCceeEEEEcCceeecc----CChHHHHHHHHhcccCCcEEEEEe
Q 010086          153 -----------------LVISGEGHR-IPFD---GNTFDFVFVGGARLEKA----SKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       153 -----------------l~~~~da~~-LPf~---D~SFD~V~s~~~~l~~~----~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                                       .++++|..+ .|++   +++||+|++..+ |||+    +++.++++++.|+|||||.+++..
T Consensus       120 ~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~-l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~  197 (263)
T 2a14_A          120 NSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLA-MECACCSLDAYRAALCNLASLLKPGGHLVTTV  197 (263)
T ss_dssp             CGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHH-HHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                             155777776 4654   789999999997 9986    344689999999999999999874

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.36  E-value=1.2e-11  Score=111.30  Aligned_cols=97  Identities=13%  Similarity=-0.020  Sum_probs=78.7

Q ss_pred             CCCCCCCeEEEEcCCCCHhHHHHHhc-CC-CcEEEEecCCC----CCcEEeccCCCCC--------CCCCceeEEEEcCc
Q 010086          112 GYLSQSAKSLCVETQYGQDVFALKEI-GV-EDSIGIFKKSS----KPLVISGEGHRIP--------FDGNTFDFVFVGGA  177 (518)
Q Consensus       112 gll~~~~rvLDVGcGtG~~~~~L~~~-g~-~~v~gID~s~~----~~l~~~~da~~LP--------f~D~SFD~V~s~~~  177 (518)
                      ..++++.+|||+|||+|..+..+.+. |. .+++|+|+++.    ...+..+|..++|        +++++||+|++...
T Consensus        18 ~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~   97 (180)
T 1ej0_A           18 KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMA   97 (180)
T ss_dssp             CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccccCcEEEEEcccccchhhhhhhccCCCCceeEEEECCC
Confidence            34678899999999999999888765 43 69999999861    1124578888887        88999999999876


Q ss_pred             eeeccCCh-----------HHHHHHHHhcccCCcEEEEEecCC
Q 010086          178 RLEKASKP-----------LDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       178 ~l~~~~dp-----------~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                       +++..++           ..+++++.|+|||||.+++.....
T Consensus        98 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A           98 -PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             -CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             -ccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence             7777666           688999999999999999875433

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.36  E-value=1.6e-12  Score=129.25  Aligned_cols=92  Identities=13%  Similarity=0.236  Sum_probs=78.4

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC------------C--CcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS------------K--PLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~------------~--~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      +.++.+|||||||+|..+..+++. + ..+++|+|+++.            +  ..++.+|+.++|++ ++||+|++..+
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~   98 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAF   98 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESC
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECCh
Confidence            567899999999999999888775 2 268999999842            1  23568999999995 69999999997


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                       ++|++++..+++++.|+|||||++++...
T Consensus        99 -l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  127 (284)
T 3gu3_A           99 -LLHMTTPETMLQKMIHSVKKGGKIICFEP  127 (284)
T ss_dssp             -GGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             -hhcCCCHHHHHHHHHHHcCCCCEEEEEec
Confidence             99999999999999999999999998753

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.36  E-value=4.9e-13  Score=132.99  Aligned_cols=89  Identities=13%  Similarity=0.010  Sum_probs=68.4

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCCC-------------------------------------------
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKP-------------------------------------------  152 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~~-------------------------------------------  152 (518)
                      ++.+|||||||+|.....++..+..+|+|+|+|+...                                           
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            6789999999999955444443346999999984100                                           


Q ss_pred             --cEEeccCCC-CCCC-----CCceeEEEEcCceeec----cCChHHHHHHHHhcccCCcEEEEE
Q 010086          153 --LVISGEGHR-IPFD-----GNTFDFVFVGGARLEK----ASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       153 --l~~~~da~~-LPf~-----D~SFD~V~s~~~~l~~----~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                        .++.+|+.+ +||+     +++||+|+|..+ |+|    ++++.++++|+.|+|||||++++.
T Consensus       151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~-l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~  214 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFC-LEAVSPDLASFQRALDHITTLLRPGGHLLLI  214 (289)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hceEEecccCCCCCccccccCCCCCCEEEehhh-hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence              012337777 7754     567999999997 999    667889999999999999999886

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.35  E-value=2e-13  Score=132.94  Aligned_cols=91  Identities=14%  Similarity=0.109  Sum_probs=72.3

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------C--CcEEeccCCCC--CCCCCceeEEEE---
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------K--PLVISGEGHRI--PFDGNTFDFVFV---  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~--~l~~~~da~~L--Pf~D~SFD~V~s---  174 (518)
                      ..+|.+|||||||+|..+..+++.+..+++|||+++.            .  ..++.++++.+  ++++++||.|+.   
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~  137 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence            4678999999999999998888765578999999841            1  12346666544  689999999985   


Q ss_pred             --cCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          175 --GGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       175 --~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                        ... ++|..++..+++|+.|+|||||++++.
T Consensus       138 ~~~~~-~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          138 PLSEE-TWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             CCBGG-GTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ecccc-hhhhcchhhhhhhhhheeCCCCEEEEE
Confidence              223 677778889999999999999998874

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.35  E-value=1.3e-12  Score=124.91  Aligned_cols=91  Identities=11%  Similarity=0.087  Sum_probs=77.7

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcC-cee
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGG-ARL  179 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~-~~l  179 (518)
                      .++.+|||||||+|..+..+.+.| .+++|+|+++.              ...++.+|..++|++ ++||+|++.. + +
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~-l  112 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDS-T  112 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTG-G
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCcc-c
Confidence            477899999999999999888876 68999999741              234568899999988 8999999997 8 9


Q ss_pred             ecc---CChHHHHHHHHhcccCCcEEEEEecC
Q 010086          180 EKA---SKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       180 ~~~---~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +|+   .++..+++++.|+|||||++++.+..
T Consensus       113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (246)
T 1y8c_A          113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence            999   45678999999999999999987643

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.35  E-value=2.9e-12  Score=119.93  Aligned_cols=114  Identities=14%  Similarity=0.180  Sum_probs=87.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      ++++ +|||||||+|..+..+++.| .+++|+|+++.              ...++.+|..++|+++++||+|++..   
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~---  102 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF---  102 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC---
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh---
Confidence            4567 99999999999999888877 59999999741              12356789999999999999999954   


Q ss_pred             ecc--CChHHHHHHHHhcccCCcEEEEEecCCC--------------ccCchhHhhhccCccEEEEecc
Q 010086          180 EKA--SKPLDFASEIVRTLKPEGFAVVHVRAKD--------------EYSFNSFLDLFNSCKLVKSRDI  232 (518)
Q Consensus       180 ~~~--~dp~~~l~Ei~RVLKPGG~lvi~~~~~~--------------~~s~~~~~~lf~~~~~v~~~~v  232 (518)
                      .|.  .++..+++++.|+|||||.+++.....+              .++...+..++..++++.+...
T Consensus       103 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~Gf~v~~~~~~  171 (202)
T 2kw5_A          103 CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELPSLNWLIANNL  171 (202)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCSSSCEEEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhcCceEEEEEEE
Confidence            343  3567899999999999999998753221              1344556667777777776543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.35  E-value=3.4e-12  Score=126.23  Aligned_cols=96  Identities=17%  Similarity=0.173  Sum_probs=78.0

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCCCHhHHHHH-hcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCc
Q 010086          106 QDLISEGYLSQSAKSLCVETQYGQDVFALK-EIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNT  168 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGtG~~~~~L~-~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~S  168 (518)
                      +.+.+...++++.+|||||||+|..+..++ +.| .+|+|+|+++.                ...++.+|..++|   ++
T Consensus        54 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~  129 (287)
T 1kpg_A           54 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EP  129 (287)
T ss_dssp             HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CC
T ss_pred             HHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CC
Confidence            334444446788999999999999998877 456 59999999741                1234578887776   89


Q ss_pred             eeEEEEcCceeecc--CChHHHHHHHHhcccCCcEEEEEe
Q 010086          169 FDFVFVGGARLEKA--SKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       169 FD~V~s~~~~l~~~--~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ||+|++..+ ++|+  .++..+++++.|+|||||++++..
T Consensus       130 fD~v~~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          130 VDRIVSIGA-FEHFGHERYDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             CSEEEEESC-GGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             eeEEEEeCc-hhhcChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999999997 9999  678899999999999999999875

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=99.34  E-value=1.9e-12  Score=136.76  Aligned_cols=161  Identities=18%  Similarity=0.163  Sum_probs=99.2

Q ss_pred             cccCCcccccccCCceEEEEeCCCCCCcchhhhhh-hhCCCCCcceEEEEEcCCccchHhhc----c-----C-CceEEE
Q 010086          305 IKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFK-KQYPKQNKTFDVYAIEADKTFHEEYK----V-----K-KKVKLL  373 (518)
Q Consensus       305 ~~ylp~~~d~s~~~r~V~iD~GAn~~g~sv~~~F~-~~YP~~~~~f~V~afE~np~~~~~~~----~-----~-~~V~~~  373 (518)
                      ..|+..-+ +.++++.++|||||| +|. .+.+|. +..|..   -+||||||+|...+.+.    .     . ++|+++
T Consensus       214 ~~Y~~~~i-~~l~~~~~viDvGAn-~G~-~s~~~a~~~~~~~---~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~  287 (409)
T 2py6_A          214 TLYFRSGL-LRFSDSEKMVDCGAS-IGE-SLAGLIGVTKGKF---ERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVH  287 (409)
T ss_dssp             GTTTSSSS-CCCCSSCEEEEETCT-TSH-HHHHHHHHHTSCC---SEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEE
T ss_pred             hhhccccc-cccCCCCEEEECCCC-cCH-HHHHHHHHhcCCC---CEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEE
Confidence            45654321 135789999999999 696 445776 566631   27999999998755432    2     4 899999


Q ss_pred             eeceeecCCceEEEecCCCCcchhhcccCCccccccccCCCCCCCCCcceeecccHHHHHhhcCCCCCeEEEEeeccchh
Q 010086          374 PYAAWVRNETLSFQINHDPDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTE  453 (518)
Q Consensus       374 ~~Av~~~~~tl~f~~~~~~~~~~~~~~~g~~~i~p~~~~~~~~~~g~~~~v~~vd~s~wl~~~v~~~D~VVlKMDIEGaE  453 (518)
                      +.|+|.++|++.|......          ++++.+...     ......+|+.+.+.++   .....|  +|||||||+|
T Consensus       288 ~~al~~~~g~~~f~~~~~~----------~s~l~~~~~-----~~~~~~~V~~~tLD~~---~~~~id--~lKiDvEG~E  347 (409)
T 2py6_A          288 GCGAGENTIRVPFNHEGGH----------GGFVKPADA-----DHEPADLIDVRPIDDI---IDDAPT--FIKMDIEGSE  347 (409)
T ss_dssp             CSEECSSCEEEEC-----------------------------------CEEEEECHHHH---CSSCCS--EEEECCSSCH
T ss_pred             EeEEECCCCEEEEEeCCCC----------CccccCCcc-----cCCCceEEEEEEhhhc---CCCCCC--EEEEcCCCCh
Confidence            9999999999988543221          233433211     0123467888999888   223445  6999999999


Q ss_pred             hhhHHHHHhcCCcccc-cEEEEEeecccccccCCCCCCCcccccHHHHHHHHHHH
Q 010086          454 FDLIPRLFETGAICLI-DEIFLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTSL  507 (518)
Q Consensus       454 ~~vL~~l~~~g~i~~I-DeLfvE~H~~~~~~~~~g~~~~~~~~~~~~cl~L~~~L  507 (518)
                      +++|+.+.+  ++... -.+.+|++..        .      ...++..+++.+|
T Consensus       348 ~~VL~G~~~--~l~~~~P~l~ie~~h~--------~------~~~~~i~~~L~~~  386 (409)
T 2py6_A          348 LSALKGARR--AISEHKPKLAISAYHR--------S------TDLLDLTNYILSI  386 (409)
T ss_dssp             HHHHHTTHH--HHHHHCCEEEEECCSS--------T------THHHHHHHHHHHH
T ss_pred             HHHHHHHHH--HHHHcCCEEEEEEecC--------c------hhHHHHHHHHHHh
Confidence            999998632  33221 2366776321        1      2346777777776

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.34  E-value=6.3e-13  Score=128.35  Aligned_cols=90  Identities=16%  Similarity=0.127  Sum_probs=71.6

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------C--CcEEeccCCCC--CCCCCceeEEEE-cC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------K--PLVISGEGHRI--PFDGNTFDFVFV-GG  176 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~--~l~~~~da~~L--Pf~D~SFD~V~s-~~  176 (518)
                      .+++.+|||||||+|..+..+++.+..+++|+|+|+.            .  ..++.+|++++  ||++++||+|++ ..
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence            4678899999999999999998766569999999841            1  23467888888  999999999999 44


Q ss_pred             ceeeccC-----ChHHHHHHHHhcccCCcEEEEE
Q 010086          177 ARLEKAS-----KPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       177 ~~l~~~~-----dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      . + +..     ++..+++|+.|+|||||++++.
T Consensus       138 ~-~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~  169 (236)
T 1zx0_A          138 P-L-SEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             C-C-BGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             c-c-chhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence            3 3 222     2346799999999999998875

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.33  E-value=4.4e-12  Score=120.23  Aligned_cols=93  Identities=23%  Similarity=0.338  Sum_probs=76.7

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC--------------CCCcEEeccCCCCCCCCCceeEEEEcCc-e
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS--------------SKPLVISGEGHRIPFDGNTFDFVFVGGA-R  178 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~--------------~~~l~~~~da~~LPf~D~SFD~V~s~~~-~  178 (518)
                      ++++.+|||||||+|..+..+.+.+ .+++|+|+++              ....++.+|..++|+++++||+|++..+ .
T Consensus        36 ~~~~~~vLDlG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~  114 (227)
T 1ve3_A           36 MKKRGKVLDLACGVGGFSFLLEDYG-FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV  114 (227)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             cCCCCeEEEEeccCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence            4568899999999999998888877 4999999974              1234678999999999999999999875 1


Q ss_pred             eeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          179 LEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++|..++..+++++.|+|||||++++...
T Consensus       115 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A          115 HFEPLELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             GCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hCCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            33444677899999999999999988753

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.33  E-value=3.6e-12  Score=128.03  Aligned_cols=91  Identities=14%  Similarity=0.156  Sum_probs=77.3

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHH--hcCCCcEEEEecCCC--------------C--CcEEeccCCCCCCCCCceeEEEEc
Q 010086          114 LSQSAKSLCVETQYGQDVFALK--EIGVEDSIGIFKKSS--------------K--PLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~--~~g~~~v~gID~s~~--------------~--~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      ++++.+|||||||+|..+..++  ..+..+++|+|+++.              .  ..++.+|+.++|++ ++||+|++.
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~  194 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSN  194 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEEC
Confidence            5788999999999999998873  333469999999741              1  23578999999998 999999998


Q ss_pred             CceeeccCChHH---HHHHHHhcccCCcEEEEEe
Q 010086          176 GARLEKASKPLD---FASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       176 ~~~l~~~~dp~~---~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .+ ++|++++..   +++++.|+|||||++++..
T Consensus       195 ~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          195 GL-NIYEPDDARVTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             SS-GGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             Ch-hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            87 999998876   6999999999999999875

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.33  E-value=3.7e-12  Score=121.67  Aligned_cols=107  Identities=14%  Similarity=0.159  Sum_probs=82.3

Q ss_pred             hhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------CCcEEeccCCC
Q 010086           92 KEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------KPLVISGEGHR  161 (518)
Q Consensus        92 ~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------~~l~~~~da~~  161 (518)
                      ..|+...+.+..++..+     +.++.+|||||||+|..+..+.+.+ .+++|+|+++.          ...++.+|..+
T Consensus        21 ~~~~~~~~~~~~~l~~~-----~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~   94 (239)
T 3bxo_A           21 KDYAAEASDIADLVRSR-----TPEASSLLDVACGTGTHLEHFTKEF-GDTAGLELSEDMLTHARKRLPDATLHQGDMRD   94 (239)
T ss_dssp             CCHHHHHHHHHHHHHHH-----CTTCCEEEEETCTTSHHHHHHHHHH-SEEEEEESCHHHHHHHHHHCTTCEEEECCTTT
T ss_pred             hhHHHHHHHHHHHHHHh-----cCCCCeEEEecccCCHHHHHHHHhC-CcEEEEeCCHHHHHHHHHhCCCCEEEECCHHH
Confidence            34555544444443322     2678899999999999998888776 48999999741          23467889999


Q ss_pred             CCCCCCceeEEEEcC-ceeeccCCh---HHHHHHHHhcccCCcEEEEEe
Q 010086          162 IPFDGNTFDFVFVGG-ARLEKASKP---LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       162 LPf~D~SFD~V~s~~-~~l~~~~dp---~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +|+ +++||+|+|.. + ++|+.++   ..+++++.|+|||||.+++..
T Consensus        95 ~~~-~~~~D~v~~~~~~-~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A           95 FRL-GRKFSAVVSMFSS-VGYLKTTEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             CCC-SSCEEEEEECTTG-GGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             ccc-CCCCcEEEEcCch-HhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            988 78999999655 5 8998554   578999999999999999874

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.32  E-value=4.8e-12  Score=120.58  Aligned_cols=87  Identities=21%  Similarity=0.352  Sum_probs=75.6

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------CCcEEeccCCCCCCCCCceeEEEEcCceeeccCChHH
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLD  187 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~  187 (518)
                      ++.+|||||||+|..+..+.+.     +|+|+++.        ...++.+|..++|+++++||+|++..+ ++|++++..
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~~~~~~  120 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTT-ICFVDDPER  120 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESC-GGGSSCHHH
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcch-HhhccCHHH
Confidence            3889999999999999877543     99998742        234678899999999999999999997 999999999


Q ss_pred             HHHHHHhcccCCcEEEEEecC
Q 010086          188 FASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       188 ~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +++++.|+|||||.+++....
T Consensus       121 ~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A          121 ALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHcCCCcEEEEEEeC
Confidence            999999999999999997643

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.32  E-value=1.9e-12  Score=131.22  Aligned_cols=93  Identities=11%  Similarity=0.026  Sum_probs=70.5

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------CC---------cEEeccC------CCC--CCC
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------KP---------LVISGEG------HRI--PFD  165 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~~---------l~~~~da------~~L--Pf~  165 (518)
                      +++.+|||||||+|..+..+...+..+|+|||+|+.            ..         .+..++.      ++|  +++
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            357899999999998776555555579999999841            10         1223443      333  578


Q ss_pred             CCceeEEEEcCceeecc---CChHHHHHHHHhcccCCcEEEEEecC
Q 010086          166 GNTFDFVFVGGARLEKA---SKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       166 D~SFD~V~s~~~~l~~~---~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +++||+|+|..+ +|++   .+...++++++|+|||||++++.+..
T Consensus       127 ~~~FD~V~~~~~-lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~  171 (302)
T 2vdw_A          127 FGKFNIIDWQFA-IHYSFHPRHYATVMNNLSELTASGGKVLITTMD  171 (302)
T ss_dssp             SSCEEEEEEESC-GGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCeeEEEECch-HHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            899999999987 8875   34578999999999999999987753

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.31  E-value=5.9e-12  Score=117.68  Aligned_cols=96  Identities=18%  Similarity=0.150  Sum_probs=75.5

Q ss_pred             CCCCCCCeEEEEcCCCCHhHHHHHhc-C--CCcEEEEecCCCC----CcEEeccCCCCC---------------------
Q 010086          112 GYLSQSAKSLCVETQYGQDVFALKEI-G--VEDSIGIFKKSSK----PLVISGEGHRIP---------------------  163 (518)
Q Consensus       112 gll~~~~rvLDVGcGtG~~~~~L~~~-g--~~~v~gID~s~~~----~l~~~~da~~LP---------------------  163 (518)
                      ++++++.+|||||||+|..+..+++. +  ..+|+|+|+++..    ..++++|..+++                     
T Consensus        18 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~   97 (201)
T 2plw_A           18 LFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYK   97 (201)
T ss_dssp             CCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCCTTCEEEECCTTTTSSCCC-----------CHHHHH
T ss_pred             CCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCCCCceEEEccccchhhhhhccccccccccchhhHHH
Confidence            55788999999999999999888764 3  3689999998742    235688888887                     


Q ss_pred             ----CCCCceeEEEEcCceeecc----CChH-------HHHHHHHhcccCCcEEEEEecC
Q 010086          164 ----FDGNTFDFVFVGGARLEKA----SKPL-------DFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       164 ----f~D~SFD~V~s~~~~l~~~----~dp~-------~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                          +++++||+|++..+ +++.    .+..       .+++++.|+|||||.+++.+..
T Consensus        98 ~~~~~~~~~fD~v~~~~~-~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (201)
T 2plw_A           98 LKEILQDKKIDIILSDAA-VPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL  156 (201)
T ss_dssp             HHHHHTTCCEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHhhcCCCcccEEEeCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence                78899999999875 5553    2222       3789999999999999987644

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.31  E-value=5.7e-12  Score=123.48  Aligned_cols=94  Identities=17%  Similarity=0.047  Sum_probs=76.0

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-CC-CcEEEEecCCC----------------------CCcEEecc---CCCCCCC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-GV-EDSIGIFKKSS----------------------KPLVISGE---GHRIPFD  165 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g~-~~v~gID~s~~----------------------~~l~~~~d---a~~LPf~  165 (518)
                      .++++.+|||||||+|..+..+++. |. .+++|+|+++.                      ...++.+|   ...+||+
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  119 (275)
T 3bkx_A           40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIA  119 (275)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGT
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCC
Confidence            4678899999999999999888775 43 69999999863                      01234666   6678899


Q ss_pred             CCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          166 GNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       166 D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +++||+|++..+ ++|+.++..+++.+.++++|||++++...
T Consensus       120 ~~~fD~v~~~~~-l~~~~~~~~~~~~~~~l~~~gG~l~~~~~  160 (275)
T 3bkx_A          120 DQHFDRVVLAHS-LWYFASANALALLFKNMAAVCDHVDVAEW  160 (275)
T ss_dssp             TCCCSEEEEESC-GGGSSCHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred             CCCEEEEEEccc-hhhCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence            999999999998 99999998877777777777999988743

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.31  E-value=3.8e-12  Score=123.53  Aligned_cols=102  Identities=12%  Similarity=0.025  Sum_probs=79.6

Q ss_pred             HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------C--------------------
Q 010086          103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------K--------------------  151 (518)
Q Consensus       103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------~--------------------  151 (518)
                      ..+..+... ...++.+|||||||+|..+..+++.+..+|+|+|+++.           .                    
T Consensus        44 ~~l~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (265)
T 2i62_A           44 KNLFKIFCL-GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNR  122 (265)
T ss_dssp             HHHHHHHHS-SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTC
T ss_pred             HHHHHHhcc-cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccc
Confidence            344455544 33567899999999999988887776459999999741           1                    


Q ss_pred             -------------C-cEEeccCCCC-CCCC---CceeEEEEcCceee----ccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          152 -------------P-LVISGEGHRI-PFDG---NTFDFVFVGGARLE----KASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       152 -------------~-l~~~~da~~L-Pf~D---~SFD~V~s~~~~l~----~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                                   . .+..+|..++ |+++   ++||+|++..+ ++    +..++..+++++.|+|||||++++..
T Consensus       123 ~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~-l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  198 (265)
T 2i62_A          123 MKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLC-LDAACPDLPAYRTALRNLGSLLKPGGFLVMVD  198 (265)
T ss_dssp             SCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhh-hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence                         2 4567888776 4467   99999999997 88    55577899999999999999998875

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.30  E-value=1.2e-12  Score=126.39  Aligned_cols=113  Identities=9%  Similarity=-0.067  Sum_probs=83.9

Q ss_pred             hhccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------CCc
Q 010086           86 RDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------KPL  153 (518)
Q Consensus        86 ~~~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~~l  153 (518)
                      ..+|+...|+.....+..+    .  ..++++.+|||||||+|..+..|++.+. +|+|+|+++.            ...
T Consensus        32 ~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~  104 (245)
T 3ggd_A           32 PVLWDANVERAVVVDLPRF----E--LLFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAANIS  104 (245)
T ss_dssp             CCTTCCCGGGTHHHHHHHH----T--TTSCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCCTTEE
T ss_pred             cceecchhHHHHHHHHHHH----h--hccCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcccCce
Confidence            3455555555443333222    2  1257889999999999999999988774 9999999841            123


Q ss_pred             EEeccCCCCCCCC-----CceeEEEEcCceeeccC--ChHHHHHHHHhcccCCcEEEEEe
Q 010086          154 VISGEGHRIPFDG-----NTFDFVFVGGARLEKAS--KPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       154 ~~~~da~~LPf~D-----~SFD~V~s~~~~l~~~~--dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ++++|..++++++     .+||+|++..+ ++|++  ++..+++++.|+|||||++++..
T Consensus       105 ~~~~d~~~~~~~~~~~~~~~~d~v~~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A          105 YRLLDGLVPEQAAQIHSEIGDANIYMRTG-FHHIPVEKRELLGQSLRILLGKQGAMYLIE  163 (245)
T ss_dssp             EEECCTTCHHHHHHHHHHHCSCEEEEESS-STTSCGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             EEECcccccccccccccccCccEEEEcch-hhcCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            5678888866543     34999999987 99998  67899999999999999977763

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.30  E-value=5.4e-12  Score=127.01  Aligned_cols=93  Identities=12%  Similarity=0.101  Sum_probs=75.0

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------------CCcEEeccCCCCC----CC--C
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------------KPLVISGEGHRIP----FD--G  166 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------------~~l~~~~da~~LP----f~--D  166 (518)
                      +++.+|||||||+|..+..+.+.+..+++|+|+++.                      ...++.+|++++|    |+  +
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            577899999999999998888765579999999741                      1235688998886    75  4


Q ss_pred             CceeEEEEcCceeecc-CC---hHHHHHHHHhcccCCcEEEEEecC
Q 010086          167 NTFDFVFVGGARLEKA-SK---PLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       167 ~SFD~V~s~~~~l~~~-~d---p~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      ++||+|+|..+ +||+ .+   +..+++++.|+|||||.+++.+..
T Consensus       113 ~~fD~V~~~~~-l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (313)
T 3bgv_A          113 MCFDICSCQFV-CHYSFESYEQADMMLRNACERLSPGGYFIGTTPN  157 (313)
T ss_dssp             CCEEEEEEETC-GGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CCEEEEEEecc-hhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            59999999997 9887 33   468999999999999999998653

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.29  E-value=9.2e-12  Score=125.27  Aligned_cols=99  Identities=14%  Similarity=0.090  Sum_probs=79.9

Q ss_pred             HHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------------CCcEEeccCCCCCCCC
Q 010086          104 VFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------------KPLVISGEGHRIPFDG  166 (518)
Q Consensus       104 l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D  166 (518)
                      .++.+++...++++.+|||||||+|..+..+++. | .+|+|+|+++.                ...++.+|..++|   
T Consensus        78 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---  153 (318)
T 2fk8_A           78 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---  153 (318)
T ss_dssp             HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---
T ss_pred             HHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---
Confidence            3344455445678899999999999999888765 6 59999999741                1234578888775   


Q ss_pred             CceeEEEEcCceeecc--CChHHHHHHHHhcccCCcEEEEEec
Q 010086          167 NTFDFVFVGGARLEKA--SKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       167 ~SFD~V~s~~~~l~~~--~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++||+|++..+ ++|+  .++..+++++.|+|||||++++...
T Consensus       154 ~~fD~v~~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  195 (318)
T 2fk8_A          154 EPVDRIVSIEA-FEHFGHENYDDFFKRCFNIMPADGRMTVQSS  195 (318)
T ss_dssp             CCCSEEEEESC-GGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCcCEEEEeCh-HHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            89999999998 9999  5788999999999999999998753

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.29  E-value=8.1e-12  Score=119.62  Aligned_cols=90  Identities=10%  Similarity=0.064  Sum_probs=75.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcC-ce
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGG-AR  178 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~-~~  178 (518)
                      ++++.+|||||||+|..+..+.+.  .+++|+|+++.              ...++.+|..++|++ ++||+|++.. + 
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~-  106 (243)
T 3d2l_A           31 VEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDS-  106 (243)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTG-
T ss_pred             cCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCc-
Confidence            467789999999999999888766  69999999741              234568899999887 8999999976 6 


Q ss_pred             eeccC---ChHHHHHHHHhcccCCcEEEEEec
Q 010086          179 LEKAS---KPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       179 l~~~~---dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++|+.   ++..+++++.|+|||||++++.+.
T Consensus       107 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  138 (243)
T 3d2l_A          107 LNYLQTEADVKQTFDSAARLLTDGGKLLFDVH  138 (243)
T ss_dssp             GGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence            88884   456789999999999999998764

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.28  E-value=3.6e-12  Score=121.04  Aligned_cols=94  Identities=13%  Similarity=0.080  Sum_probs=75.4

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC-------------------CCcEEeccCCCCCCCCCceeEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS-------------------KPLVISGEGHRIPFDGNTFDFVF  173 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~-------------------~~l~~~~da~~LPf~D~SFD~V~  173 (518)
                      ++++.+|||||||+|..+..|++.+ ..+|+|+|+++.                   ...++++|++++|+++++ |.|+
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~  103 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH  103 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence            5678999999999999998888763 379999999863                   112468999999999888 8777


Q ss_pred             EcCc--ee--eccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          174 VGGA--RL--EKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       174 s~~~--~l--~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      ....  .+  +|++++..+++|+.|+|||||++++.+..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (218)
T 3mq2_A          104 VLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNL  142 (218)
T ss_dssp             EESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             EEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecc
Confidence            4321  12  37888899999999999999999997643

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.27  E-value=7.6e-12  Score=115.59  Aligned_cols=94  Identities=11%  Similarity=0.108  Sum_probs=70.3

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCC-CCCCceeEEEEcC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIP-FDGNTFDFVFVGG  176 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LP-f~D~SFD~V~s~~  176 (518)
                      .++++.+|||+|||+|..+..|++.+ .+|+|+|+++.               ...++.++.+.++ +++++||+|++..
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~la~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~   97 (185)
T 3mti_A           19 VLDDESIVVDATMGNGNDTAFLAGLS-KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL   97 (185)
T ss_dssp             TCCTTCEEEESCCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred             hCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence            46789999999999999999998874 79999999841               1224466676654 6689999999873


Q ss_pred             ceeec--------cCChHHHHHHHHhcccCCcEEEEEec
Q 010086          177 ARLEK--------ASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       177 ~~l~~--------~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      .++++        ..++..+++++.|+|||||++++.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            22332        12335788999999999999988764

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.27  E-value=6.7e-12  Score=125.38  Aligned_cols=92  Identities=13%  Similarity=0.255  Sum_probs=74.6

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------------KPLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------------~~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      ++.+|||||||+|..+..|++.| .+|+|+|+++.                  ...++++|..++|+ +++||+|++...
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~  159 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSG  159 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHH
T ss_pred             CCCcEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCc
Confidence            44599999999999999998887 68999999841                  12367899999998 789999997644


Q ss_pred             eeeccCC--hHHHHHHHHhcccCCcEEEEEecCC
Q 010086          178 RLEKASK--PLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       178 ~l~~~~d--p~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      .++|+..  ...+++++.|+|||||++++.+...
T Consensus       160 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  193 (299)
T 3g2m_A          160 SINELDEADRRGLYASVREHLEPGGKFLLSLAMS  193 (299)
T ss_dssp             HHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             ccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence            3666542  3689999999999999999987544

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.25  E-value=4.9e-11  Score=112.79  Aligned_cols=134  Identities=13%  Similarity=0.063  Sum_probs=89.1

Q ss_pred             ccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC----CcEEeccCCCCC
Q 010086           88 MYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK----PLVISGEGHRIP  163 (518)
Q Consensus        88 ~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~----~l~~~~da~~LP  163 (518)
                      -|+++.+.|-.+    +.+   ...+++++.+|||+|||+|..+..+++.+ ..|+|||+++..    ..++++|..+.+
T Consensus         4 ~yr~Ra~~KL~e----i~~---~~~~~~~g~~VLDlG~G~G~~s~~la~~~-~~V~gvD~~~~~~~~~v~~~~~D~~~~~   75 (191)
T 3dou_A            4 QLRSRAAFKLEF----LLD---RYRVVRKGDAVIEIGSSPGGWTQVLNSLA-RKIISIDLQEMEEIAGVRFIRCDIFKET   75 (191)
T ss_dssp             CTTSHHHHHHHH----HHH---HHCCSCTTCEEEEESCTTCHHHHHHTTTC-SEEEEEESSCCCCCTTCEEEECCTTSSS
T ss_pred             CCCCcHHHHHHH----HHH---HcCCCCCCCEEEEEeecCCHHHHHHHHcC-CcEEEEeccccccCCCeEEEEccccCHH
Confidence            356665555332    222   22567899999999999999999888774 799999998742    235789988865


Q ss_pred             CC-----------CCceeEEEEcCceee----ccCC-------hHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhc
Q 010086          164 FD-----------GNTFDFVFVGGARLE----KASK-------PLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLF  221 (518)
Q Consensus       164 f~-----------D~SFD~V~s~~~~l~----~~~d-------p~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf  221 (518)
                      ..           .++||+|+|... ..    +..+       ...+++++.|+|||||.+++.+......  ..+...+
T Consensus        76 ~~~~~~~~~~~~~~~~~D~Vlsd~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~--~~~~~~l  152 (191)
T 3dou_A           76 IFDDIDRALREEGIEKVDDVVSDAM-AKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMT--NDFIAIW  152 (191)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHH--HHHHHHH
T ss_pred             HHHHHHHHhhcccCCcceEEecCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCH--HHHHHHH
Confidence            32           149999999642 11    1111       2467899999999999999876544321  2343333


Q ss_pred             c-CccEEEEecc
Q 010086          222 N-SCKLVKSRDI  232 (518)
Q Consensus       222 ~-~~~~v~~~~v  232 (518)
                      + .|+-|.+.++
T Consensus       153 ~~~F~~v~~~kP  164 (191)
T 3dou_A          153 RKNFSSYKISKP  164 (191)
T ss_dssp             GGGEEEEEEECC
T ss_pred             HHhcCEEEEECC
Confidence            3 3556665543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.25  E-value=7.5e-11  Score=113.60  Aligned_cols=127  Identities=16%  Similarity=0.206  Sum_probs=88.6

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-------------CCcEEeccCCC----CCCCCCceeEEEE
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-------------KPLVISGEGHR----IPFDGNTFDFVFV  174 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-------------~~l~~~~da~~----LPf~D~SFD~V~s  174 (518)
                      .++++.+|||+|||+|..+..+++. |...|+|+|+++.             ...++.+|+..    +|++ ++||+|+.
T Consensus        71 ~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~  149 (230)
T 1fbn_A           71 PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYE  149 (230)
T ss_dssp             CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEE
T ss_pred             CCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEE
Confidence            3578899999999999999888775 5469999999841             11245788888    8887 89999983


Q ss_pred             cCceeeccCCh---HHHHHHHHhcccCCcEEEEEecCC--Ccc------CchhHhhhcc--CccEEEEeccCCCCCCccc
Q 010086          175 GGARLEKASKP---LDFASEIVRTLKPEGFAVVHVRAK--DEY------SFNSFLDLFN--SCKLVKSRDIDGIDSSLPY  241 (518)
Q Consensus       175 ~~~~l~~~~dp---~~~l~Ei~RVLKPGG~lvi~~~~~--~~~------s~~~~~~lf~--~~~~v~~~~v~~~~~~~p~  241 (518)
                            ++++|   ..+++++.|+|||||++++.+...  +..      ....+. ++.  .|+++....+++|.+.  +
T Consensus       150 ------~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~--~  220 (230)
T 1fbn_A          150 ------DVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKD--H  220 (230)
T ss_dssp             ------CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTT--E
T ss_pred             ------ecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCccc--e
Confidence                  33456   678999999999999998864221  110      002233 222  5788888887777543  3


Q ss_pred             eeEEEEeec
Q 010086          242 IREIVLKKE  250 (518)
Q Consensus       242 ~~~vv~kK~  250 (518)
                      + .++.+|+
T Consensus       221 ~-~v~~~k~  228 (230)
T 1fbn_A          221 V-MFVGIWE  228 (230)
T ss_dssp             E-EEEEEEC
T ss_pred             E-EEEEEeC
Confidence            3 3555553

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.25  E-value=4.2e-11  Score=115.83  Aligned_cols=99  Identities=20%  Similarity=0.256  Sum_probs=76.4

Q ss_pred             HHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEE
Q 010086          107 DLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFV  172 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V  172 (518)
                      .+......+++.+|||+|||+|..+..|++.| .+++|+|+++.              ...++++|..++|++ ++||+|
T Consensus        32 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v  109 (252)
T 1wzn_A           32 EIFKEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAV  109 (252)
T ss_dssp             HHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEE
T ss_pred             HHHHHhcccCCCEEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEE
Confidence            33333344677899999999999999888877 59999999741              234578899998876 689999


Q ss_pred             EEcCceeeccC--ChHHHHHHHHhcccCCcEEEEEec
Q 010086          173 FVGGARLEKAS--KPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       173 ~s~~~~l~~~~--dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++....+++..  ++.++++++.|+|||||++++.+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A          110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence            98643244443  456889999999999999988753

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.25  E-value=3.9e-12  Score=134.21  Aligned_cols=104  Identities=13%  Similarity=0.091  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC------------------------CCcE
Q 010086          100 FYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS------------------------KPLV  154 (518)
Q Consensus       100 ~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~------------------------~~l~  154 (518)
                      .....+..+++...++++++|||||||+|..+..++. .|...++|||+++.                        ...+
T Consensus       157 t~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVef  236 (438)
T 3uwp_A          157 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  236 (438)
T ss_dssp             THHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEE
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEE
Confidence            3445555566655678999999999999999987764 56556999999841                        1235


Q ss_pred             EeccCCCCCCCC--CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          155 ISGEGHRIPFDG--NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       155 ~~~da~~LPf~D--~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +++|+.++||++  ++||+|+++.. + +.+++...+.|+.|+|||||++++.
T Consensus       237 i~GD~~~lp~~d~~~~aDVVf~Nn~-~-F~pdl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          237 ERGDFLSEEWRERIANTSVIFVNNF-A-FGPEVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             EECCTTSHHHHHHHHTCSEEEECCT-T-CCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred             EECcccCCccccccCCccEEEEccc-c-cCchHHHHHHHHHHcCCCCcEEEEe
Confidence            689999999976  58999999875 3 3466778999999999999999875

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.24  E-value=4.4e-11  Score=109.68  Aligned_cols=94  Identities=13%  Similarity=0.072  Sum_probs=74.9

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C---CcEEeccCCCCCCCCCceeEEEEc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K---PLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~---~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      ..+++.+|||+|||+|..+..+.+.+ .+++|+|+++.              .   ..++.+|..+ ++++++||+|++.
T Consensus        49 ~~~~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~  126 (194)
T 1dus_A           49 VVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITN  126 (194)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEEC
T ss_pred             ccCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEEC
Confidence            35678899999999999998887774 79999998741              1   3345777766 5668899999998


Q ss_pred             Cceeec-cCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          176 GARLEK-ASKPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       176 ~~~l~~-~~dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      .. +++ ..+...+++++.|+|||||.+++.....
T Consensus       127 ~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  160 (194)
T 1dus_A          127 PP-IRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             CC-STTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             CC-cccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            76 666 3456789999999999999999987544

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.23  E-value=2.6e-11  Score=112.69  Aligned_cols=99  Identities=13%  Similarity=0.032  Sum_probs=73.6

Q ss_pred             cCCCCCCCeEEEEcCCCCHhHHHHHhc-CC---------CcEEEEecCCCC----CcEE-eccCCCCC--------CCCC
Q 010086          111 EGYLSQSAKSLCVETQYGQDVFALKEI-GV---------EDSIGIFKKSSK----PLVI-SGEGHRIP--------FDGN  167 (518)
Q Consensus       111 ~gll~~~~rvLDVGcGtG~~~~~L~~~-g~---------~~v~gID~s~~~----~l~~-~~da~~LP--------f~D~  167 (518)
                      ..+++++.+|||+|||+|..+..+++. |.         .+|+|+|+++..    ..++ .+|..+.+        ++++
T Consensus        17 ~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (196)
T 2nyu_A           17 HQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGR   96 (196)
T ss_dssp             HCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHHSGGG
T ss_pred             cCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHhcCCC
Confidence            356788999999999999999888775 43         689999998742    2245 66766543        4577


Q ss_pred             ceeEEEEcCc---eeeccCCh-------HHHHHHHHhcccCCcEEEEEecCC
Q 010086          168 TFDFVFVGGA---RLEKASKP-------LDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       168 SFD~V~s~~~---~l~~~~dp-------~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      +||+|+|..+   ..+|..++       ..+++++.|+|||||.+++.+...
T Consensus        97 ~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A           97 RADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             CCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            9999999653   12233333       478999999999999999986543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.23  E-value=1.1e-11  Score=115.34  Aligned_cols=94  Identities=10%  Similarity=-0.010  Sum_probs=75.6

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCC--CCCCceeEEEEcCc
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIP--FDGNTFDFVFVGGA  177 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LP--f~D~SFD~V~s~~~  177 (518)
                      .++.+|||+|||+|..+..+.+.|..+|+|+|+++.               ...++++|+.+++  +++++||+|++...
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p  122 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP  122 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence            478899999999999998777677678999999841               1235678887764  56899999999875


Q ss_pred             eeecc-CChHHHHHHHHh--cccCCcEEEEEecCC
Q 010086          178 RLEKA-SKPLDFASEIVR--TLKPEGFAVVHVRAK  209 (518)
Q Consensus       178 ~l~~~-~dp~~~l~Ei~R--VLKPGG~lvi~~~~~  209 (518)
                       +++. .+..++++++.|  +|||||++++.....
T Consensus       123 -~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          123 -YNVDSADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             -TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             -CCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence             6664 567789999999  999999999987543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.23  E-value=1e-10  Score=111.76  Aligned_cols=136  Identities=13%  Similarity=0.106  Sum_probs=91.7

Q ss_pred             CCCCCCCeEEEEcCC-CCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCC-CCCCCceeEEEEc
Q 010086          112 GYLSQSAKSLCVETQ-YGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRI-PFDGNTFDFVFVG  175 (518)
Q Consensus       112 gll~~~~rvLDVGcG-tG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~L-Pf~D~SFD~V~s~  175 (518)
                      ..++++.+|||+||| +|..+..+++.+..+++|+|+++.              ...++.+|+..+ ++++++||+|++.
T Consensus        51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~n  130 (230)
T 3evz_A           51 TFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSA  130 (230)
T ss_dssp             TTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEEC
T ss_pred             hhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEEC
Confidence            346789999999999 999998888762379999999741              234567887544 6788999999997


Q ss_pred             CceeeccCC-------------------hHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhcc--CccEEEEeccCC
Q 010086          176 GARLEKASK-------------------PLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFN--SCKLVKSRDIDG  234 (518)
Q Consensus       176 ~~~l~~~~d-------------------p~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~--~~~~v~~~~v~~  234 (518)
                      .. +++..+                   ...+++++.|+|||||++++.+..... ....+.+++.  .+++..+....+
T Consensus       131 pp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~l~~~g~~~~~~~~~~g  208 (230)
T 3evz_A          131 PP-YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEK-LLNVIKERGIKLGYSVKDIKFKVG  208 (230)
T ss_dssp             CC-CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHH-HHHHHHHHHHHTTCEEEEEEECCC
T ss_pred             CC-CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHh-HHHHHHHHHHHcCCceEEEEecCC
Confidence            54 433222                   367899999999999999987654321 1123333332  456666655444


Q ss_pred             CCCCccceeEEEEeecccc
Q 010086          235 IDSSLPYIREIVLKKESDL  253 (518)
Q Consensus       235 ~~~~~p~~~~vv~kK~~~~  253 (518)
                      +.    ..+.+++.|....
T Consensus       209 ~~----~~~~l~f~~~~~~  223 (230)
T 3evz_A          209 TR----WRHSLIFFKGISE  223 (230)
T ss_dssp             C-----CEEEEEEECCC--
T ss_pred             Ce----EEEEEEEeccccc
Confidence            44    4567888886444

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.22  E-value=2.9e-11  Score=124.30  Aligned_cols=91  Identities=13%  Similarity=0.031  Sum_probs=75.2

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      .+.++.+|||||||+|..+..+++.|..+|+|+|+++.               ...++.+|++++++++++||+|++...
T Consensus        61 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~  140 (340)
T 2fyt_A           61 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM  140 (340)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             hhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence            35678899999999999998888887669999999841               123568899999999999999998651


Q ss_pred             --eeeccCChHHHHHHHHhcccCCcEEE
Q 010086          178 --RLEKASKPLDFASEIVRTLKPEGFAV  203 (518)
Q Consensus       178 --~l~~~~dp~~~l~Ei~RVLKPGG~lv  203 (518)
                        .+.|..++..++.++.|+|||||+++
T Consensus       141 ~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          141 GYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             BTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence              15565667789999999999999987

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.22  E-value=1e-11  Score=121.93  Aligned_cols=123  Identities=11%  Similarity=0.162  Sum_probs=87.1

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC-----------CCc--EEecc---CCCCCCCCCceeEEEE
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS-----------KPL--VISGE---GHRIPFDGNTFDFVFV  174 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~-----------~~l--~~~~d---a~~LPf~D~SFD~V~s  174 (518)
                      .++||++|||+|||+|..+..+++. | .+.|+|+|+++.           ...  .+.++   .+..|+.+++||+|++
T Consensus        74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~  153 (233)
T 4df3_A           74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYA  153 (233)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEE
Confidence            4799999999999999999988873 4 368999999841           122  23444   4556888999999998


Q ss_pred             cCceeeccCChHHHHHHHHhcccCCcEEEEEecCCCc-------cCc-hhHhhh-ccCccEEEEeccCCCCCC
Q 010086          175 GGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDE-------YSF-NSFLDL-FNSCKLVKSRDIDGIDSS  238 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~-------~s~-~~~~~l-f~~~~~v~~~~v~~~~~~  238 (518)
                      .   +.|..++..++.|+.|+|||||.+++.+.....       ..+ .....| -..|+++......+|...
T Consensus       154 d---~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L~pf~~~  223 (233)
T 4df3_A          154 D---VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDPFDRD  223 (233)
T ss_dssp             C---CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEECTTTSTT
T ss_pred             e---ccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEccCCCCCc
Confidence            5   445567788999999999999999887532211       000 112222 136788888777777654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.22  E-value=1.8e-11  Score=122.06  Aligned_cols=100  Identities=10%  Similarity=0.013  Sum_probs=77.1

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------CCcEEeccCCCCCC-----CCCceeE
Q 010086          106 QDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------KPLVISGEGHRIPF-----DGNTFDF  171 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------~~l~~~~da~~LPf-----~D~SFD~  171 (518)
                      +.+++...++++.+|||||||+|..+..|++.| .+|+|+|+|+.         ....++++...+++     .+++||+
T Consensus        35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g-~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~  113 (261)
T 3iv6_A           35 ENDIFLENIVPGSTVAVIGASTRFLIEKALERG-ASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDF  113 (261)
T ss_dssp             HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSE
T ss_pred             HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccE
Confidence            334444456789999999999999999998887 69999999841         11134555555554     2679999


Q ss_pred             EEEcCceeeccCC--hHHHHHHHHhcccCCcEEEEEecC
Q 010086          172 VFVGGARLEKASK--PLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       172 V~s~~~~l~~~~d--p~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      |++..+ ++|+..  ...+++++.|+| |||++++....
T Consensus       114 Vv~~~~-l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          114 VLNDRL-INRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             EEEESC-GGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             EEEhhh-hHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence            999987 998753  346899999999 99999998643

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.21  E-value=2.3e-11  Score=116.65  Aligned_cols=119  Identities=14%  Similarity=0.128  Sum_probs=80.5

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-------------CCcEEeccCCC----CCCCCCceeEEEEc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-------------KPLVISGEGHR----IPFDGNTFDFVFVG  175 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-------------~~l~~~~da~~----LPf~D~SFD~V~s~  175 (518)
                      ++++.+|||||||+|..+..+++. |..+|+|+|+|+.             ....+.+|+..    .|++ ++||+|++.
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~  133 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQD  133 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence            578899999999999998888764 3358999999852             11234567766    3665 899999997


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEEecCCC--c-cCchhH-----hhhccCccEEEEeccCCCC
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKD--E-YSFNSF-----LDLFNSCKLVKSRDIDGID  236 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~--~-~s~~~~-----~~lf~~~~~v~~~~v~~~~  236 (518)
                      .  .++ .+...+++|+.|+|||||++++.+....  . .+...+     ..+-+.|+++......+|+
T Consensus       134 ~--~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~p~~  199 (210)
T 1nt2_A          134 I--AQK-NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKHGSLMPYH  199 (210)
T ss_dssp             C--CST-THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEEECTTTC
T ss_pred             c--cCh-hHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhhcEEeeeecCCCCC
Confidence            4  232 2233458999999999999998853211  1 111121     1121228888887776665

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.20  E-value=1.5e-11  Score=123.31  Aligned_cols=90  Identities=16%  Similarity=0.171  Sum_probs=71.3

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC--------------------------------------------
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS--------------------------------------------  150 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~--------------------------------------------  150 (518)
                      ++.+|||||||+|..+..+++. +..+|+|||+++.                                            
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            5789999999999999888774 4579999999731                                            


Q ss_pred             -----------------------------CCcEEeccCCCC-----CCCCCceeEEEEcCceeeccC------ChHHHHH
Q 010086          151 -----------------------------KPLVISGEGHRI-----PFDGNTFDFVFVGGARLEKAS------KPLDFAS  190 (518)
Q Consensus       151 -----------------------------~~l~~~~da~~L-----Pf~D~SFD~V~s~~~~l~~~~------dp~~~l~  190 (518)
                                                   ...++++|....     ++.+++||+|+|..+ ++|+.      ++.++++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~v-l~~ihl~~~~~~~~~~l~  204 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSL-TKWVHLNWGDEGLKRMFR  204 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESC-HHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChH-HHHhhhcCCHHHHHHHHH
Confidence                                         012345565543     378999999999997 76663      5678999


Q ss_pred             HHHhcccCCcEEEEEe
Q 010086          191 EIVRTLKPEGFAVVHV  206 (518)
Q Consensus       191 Ei~RVLKPGG~lvi~~  206 (518)
                      +++|+|||||++++..
T Consensus       205 ~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          205 RIYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHHEEEEEEEEEEC
T ss_pred             HHHHHhCCCcEEEEec
Confidence            9999999999999964

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.20  E-value=1.7e-11  Score=117.67  Aligned_cols=82  Identities=13%  Similarity=0.157  Sum_probs=70.4

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------CCcEEeccC-CCCCCC-CCceeEEEEcCceeec
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------KPLVISGEG-HRIPFD-GNTFDFVFVGGARLEK  181 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------~~l~~~~da-~~LPf~-D~SFD~V~s~~~~l~~  181 (518)
                      ++++.+|||||||+|..+..+++.+ .+|+|+|+++.          ...++.+|. +.+|++ +++||+|++..     
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~-----  119 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR-----  119 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence            4688999999999999999998886 69999999842          234678888 689999 99999999863     


Q ss_pred             cCChHHHHHHHHhcccCCcEEE
Q 010086          182 ASKPLDFASEIVRTLKPEGFAV  203 (518)
Q Consensus       182 ~~dp~~~l~Ei~RVLKPGG~lv  203 (518)
                        ++..+++++.|+|||||+++
T Consensus       120 --~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          120 --GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             --CCSGGGGGHHHHEEEEEEEE
T ss_pred             --CHHHHHHHHHHHcCCCcEEE
Confidence              46788999999999999998

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.20  E-value=6.5e-11  Score=123.95  Aligned_cols=110  Identities=14%  Similarity=0.250  Sum_probs=87.8

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARLE  180 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~  180 (518)
                      .++.+|||+|||+|..+..+.+.+ .+|+|+|+++.              ...++.+|+.+.++++++||+|++... +|
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g-~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp-~~  309 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPP-FH  309 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTT-CEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCC-CC
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCc-hh
Confidence            367899999999999999888877 69999999741              234678999999888899999999876 77


Q ss_pred             c-----cCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEE
Q 010086          181 K-----ASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLV  227 (518)
Q Consensus       181 ~-----~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v  227 (518)
                      +     ..++..+++++.|+|||||++++.......|. ..+.+.|.+++.+
T Consensus       310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~-~~l~~~f~~v~~l  360 (381)
T 3dmg_A          310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYE-PLLEEKFGAFQTL  360 (381)
T ss_dssp             TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHH-HHHHHHHSCCEEE
T ss_pred             hcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChH-HHHHHhhccEEEE
Confidence            7     34566899999999999999999875443332 3355568887777

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.20  E-value=3.9e-11  Score=119.63  Aligned_cols=93  Identities=13%  Similarity=0.102  Sum_probs=71.8

Q ss_pred             HcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------CC----------cEE--eccCCCCCCCCCceeE
Q 010086          110 SEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------KP----------LVI--SGEGHRIPFDGNTFDF  171 (518)
Q Consensus       110 ~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------~~----------l~~--~~da~~LPf~D~SFD~  171 (518)
                      +..+++++.+|||||||+|..+..+++.  ..|+|||+++.      .+          .++  ++|+.++|  +++||+
T Consensus        68 ~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~  143 (265)
T 2oxt_A           68 ERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDV  143 (265)
T ss_dssp             HHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSE
T ss_pred             HcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcE
Confidence            3467889999999999999999888876  68999999863      11          235  67888766  889999


Q ss_pred             EEEcCceeeccCCh----H---HHHHHHHhcccCCc--EEEEEecC
Q 010086          172 VFVGGARLEKASKP----L---DFASEIVRTLKPEG--FAVVHVRA  208 (518)
Q Consensus       172 V~s~~~~l~~~~dp----~---~~l~Ei~RVLKPGG--~lvi~~~~  208 (518)
                      |+|..+  ++..++    .   .++.++.|+|||||  .+++.+..
T Consensus       144 V~sd~~--~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          144 IMCDVG--ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             EEECCC--CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             EEEeCc--ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            999753  333232    1   37899999999999  88886644

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.19  E-value=3.7e-11  Score=120.55  Aligned_cols=96  Identities=13%  Similarity=0.015  Sum_probs=73.4

Q ss_pred             HHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------CC----------cEE--eccCCCCCCCCCc
Q 010086          107 DLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------KP----------LVI--SGEGHRIPFDGNT  168 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------~~----------l~~--~~da~~LPf~D~S  168 (518)
                      .+.+.+.++++.+|||||||+|..+..+++.  ..|+|||+++.      .+          .++  ++|+.++|  +++
T Consensus        73 ~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~  148 (276)
T 2wa2_A           73 WIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQ  148 (276)
T ss_dssp             HHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCC
T ss_pred             HHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCC
Confidence            3445567889999999999999999888877  58999999863      11          235  77888866  889


Q ss_pred             eeEEEEcCceeeccCCh----H---HHHHHHHhcccCCc--EEEEEecC
Q 010086          169 FDFVFVGGARLEKASKP----L---DFASEIVRTLKPEG--FAVVHVRA  208 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp----~---~~l~Ei~RVLKPGG--~lvi~~~~  208 (518)
                      ||+|+|..+  ++..++    .   .+++++.|+|||||  .+++.+..
T Consensus       149 fD~Vvsd~~--~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          149 ADTVLCDIG--ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             CSEEEECCC--CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             cCEEEECCC--cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            999999763  222232    1   47899999999999  88886544

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.19  E-value=3.6e-11  Score=112.17  Aligned_cols=137  Identities=12%  Similarity=0.159  Sum_probs=91.0

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC----------------CCcEEeccCCCCC-CCCCceeEEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS----------------KPLVISGEGHRIP-FDGNTFDFVFV  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~----------------~~l~~~~da~~LP-f~D~SFD~V~s  174 (518)
                      ++++.+|||+|||+|..+..+++.  +..+++|+|+++.                ...++.+|+.+++ +.+++||+|++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence            578899999999999999887764  3359999999741                1235678888886 78899999998


Q ss_pred             cCceee--------ccCChHHHHHHHHhcccCCcEEEEEecCCCc--c----CchhHhh-h-ccCccEEEEeccCCCCCC
Q 010086          175 GGARLE--------KASKPLDFASEIVRTLKPEGFAVVHVRAKDE--Y----SFNSFLD-L-FNSCKLVKSRDIDGIDSS  238 (518)
Q Consensus       175 ~~~~l~--------~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~--~----s~~~~~~-l-f~~~~~v~~~~v~~~~~~  238 (518)
                      ....+.        +..++.++++++.|+|||||++++.......  .    ....+.. + .+.|++.+...++..+. 
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~-  178 (197)
T 3eey_A          100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANC-  178 (197)
T ss_dssp             EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSC-
T ss_pred             cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccC-
Confidence            764111        1113457999999999999999887533211  0    0111221 1 13578887777654332 


Q ss_pred             ccceeEEEEeecccc
Q 010086          239 LPYIREIVLKKESDL  253 (518)
Q Consensus       239 ~p~~~~vv~kK~~~~  253 (518)
                      -|+  .++.+|..+.
T Consensus       179 pp~--~~~~~~~~~~  191 (197)
T 3eey_A          179 PPI--LVCIEKISEG  191 (197)
T ss_dssp             CCE--EEEEEECCSS
T ss_pred             CCe--EEEEEEcccc
Confidence            234  3556666544

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.18  E-value=5.6e-11  Score=111.94  Aligned_cols=88  Identities=17%  Similarity=0.191  Sum_probs=74.0

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      .++++.+|||||||+|..+..+++.+ .+++|+|+++.               ...++.+|+.+.+.++++||+|++..+
T Consensus        74 ~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~  152 (210)
T 3lbf_A           74 ELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAA  152 (210)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccc
Confidence            46788999999999999998888875 79999999741               123567888888778899999999987


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                       ++|+.+      ++.|+|||||++++.+..
T Consensus       153 -~~~~~~------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          153 -PPEIPT------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             -CSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred             -hhhhhH------HHHHhcccCcEEEEEEcC
Confidence             888764      689999999999998864

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.18  E-value=6.8e-11  Score=115.77  Aligned_cols=87  Identities=18%  Similarity=0.248  Sum_probs=71.4

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------CCcEEeccCCCCCCCCCceeEEEEcCceeeccC
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKAS  183 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~  183 (518)
                      .++.+|||||||+|..+..+.+. +..+++|+|+++.          ...+..+|++++|+++++||+|++..+ .    
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-~----  158 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA-P----  158 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC-C----
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC-h----
Confidence            57889999999999999888775 2369999999742          234678899999999999999998764 2    


Q ss_pred             ChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          184 KPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       184 dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                         .+++|+.|+|||||.+++.+...
T Consensus       159 ---~~l~~~~~~L~pgG~l~~~~~~~  181 (269)
T 1p91_A          159 ---CKAEELARVVKPGGWVITATPGP  181 (269)
T ss_dssp             ---CCHHHHHHHEEEEEEEEEEEECT
T ss_pred             ---hhHHHHHHhcCCCcEEEEEEcCH
Confidence               24899999999999999876543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.18  E-value=6.3e-11  Score=120.21  Aligned_cols=92  Identities=16%  Similarity=0.122  Sum_probs=72.3

Q ss_pred             cCCCCCCCeEEEEcCCCCHhH-HHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEE
Q 010086          111 EGYLSQSAKSLCVETQYGQDV-FALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFV  174 (518)
Q Consensus       111 ~gll~~~~rvLDVGcGtG~~~-~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s  174 (518)
                      ..-++++.+|||||||+|..+ ..+++....+|+|||+++.               ...++++|+.++|  +++||+|++
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~  194 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMV  194 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEE
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEE
Confidence            345789999999999998655 4455532379999999841               1235688998876  899999998


Q ss_pred             cCceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          175 GGARLEKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      ..  +  ++++.++++|+.|+|||||++++...+
T Consensus       195 ~a--~--~~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          195 AA--L--AEPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             CT--T--CSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CC--C--ccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            65  3  478899999999999999999997643

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.18  E-value=5e-11  Score=122.88  Aligned_cols=91  Identities=19%  Similarity=0.129  Sum_probs=75.7

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------C--CcEEeccCCCCCCCCCceeEEEEcCc-
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------K--PLVISGEGHRIPFDGNTFDFVFVGGA-  177 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~--~l~~~~da~~LPf~D~SFD~V~s~~~-  177 (518)
                      +.++.+|||||||+|..+..+++.|..+|+|+|+++.             .  ..++.+|.+++|+++++||+|++... 
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~  143 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  143 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence            3578899999999999999998888679999999840             1  24578999999999999999999642 


Q ss_pred             -eeeccCChHHHHHHHHhcccCCcEEEE
Q 010086          178 -RLEKASKPLDFASEIVRTLKPEGFAVV  204 (518)
Q Consensus       178 -~l~~~~dp~~~l~Ei~RVLKPGG~lvi  204 (518)
                       .+++..++..++.++.|+|||||+++.
T Consensus       144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          144 YCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence             144556788999999999999999874

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.18  E-value=6.2e-11  Score=119.98  Aligned_cols=91  Identities=10%  Similarity=-0.006  Sum_probs=69.2

Q ss_pred             CCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC--------CcEE---eccCCCCC---CCCCceeEEEEcCc
Q 010086          112 GYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK--------PLVI---SGEGHRIP---FDGNTFDFVFVGGA  177 (518)
Q Consensus       112 gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~--------~l~~---~~da~~LP---f~D~SFD~V~s~~~  177 (518)
                      ++-.++.+|||||||||.++..|.+.|..+|+|||+++..        +.+.   ..++..++   +++.+||+|++..+
T Consensus        81 ~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~s  160 (291)
T 3hp7_A           81 NLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVS  160 (291)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCS
T ss_pred             CCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEee
Confidence            3334678999999999999988888887799999998631        1111   23444444   45667999999776


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                       |++   ...++.|+.|+|||||.+++.+
T Consensus       161 -f~s---l~~vL~e~~rvLkpGG~lv~lv  185 (291)
T 3hp7_A          161 -FIS---LNLILPALAKILVDGGQVVALV  185 (291)
T ss_dssp             -SSC---GGGTHHHHHHHSCTTCEEEEEE
T ss_pred             -Hhh---HHHHHHHHHHHcCcCCEEEEEE
Confidence             775   4678999999999999998874

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.17  E-value=2.9e-10  Score=106.62  Aligned_cols=106  Identities=12%  Similarity=-0.024  Sum_probs=80.8

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      ++.+|||+|||+|..+..+++. +..+++|+|+++.               ...+..+|..+++ ++++||+|++..  +
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~--~  141 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA--F  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC--S
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec--c
Confidence            4789999999999999888764 3469999999741               1234678888776 678999999864  3


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEe
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSR  230 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~  230 (518)
                         .++..+++++.|+|||||++++..+...   ...+..+++.|+++.+.
T Consensus       142 ---~~~~~~l~~~~~~L~~gG~l~~~~~~~~---~~~~~~~~~g~~~~~~~  186 (207)
T 1jsx_A          142 ---ASLNDMVSWCHHLPGEQGRFYALKGQMP---EDEIALLPEEYQVESVV  186 (207)
T ss_dssp             ---SSHHHHHHHHTTSEEEEEEEEEEESSCC---HHHHHTSCTTEEEEEEE
T ss_pred             ---CCHHHHHHHHHHhcCCCcEEEEEeCCCc---hHHHHHHhcCCceeeee
Confidence               3477899999999999999999865432   24556666678777755

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.14  E-value=1e-10  Score=111.79  Aligned_cols=89  Identities=18%  Similarity=0.167  Sum_probs=72.0

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      .+.++.+|||||||+|..+..+.+.+ .+++|+|+++.             ...++.+|+.+.+.++++||+|++..+ +
T Consensus        67 ~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~-~  144 (231)
T 1vbf_A           67 DLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWAT-A  144 (231)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSB-B
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCc-H
Confidence            46788999999999999999888877 79999999741             123567887764335789999999987 8


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      +|+.      .++.|+|||||++++.+...
T Consensus       145 ~~~~------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          145 PTLL------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             SSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred             HHHH------HHHHHHcCCCcEEEEEEcCC
Confidence            8874      47999999999999987543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.14  E-value=1e-10  Score=113.29  Aligned_cols=88  Identities=10%  Similarity=0.023  Sum_probs=71.2

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCCCCC---CCceeEEEEc
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRIPFD---GNTFDFVFVG  175 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~LPf~---D~SFD~V~s~  175 (518)
                      +++.+|||||||+|..+..++.. +..+|+|+|+++.               ...++.+|+++++++   +++||+|+|.
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence            56789999999999998888752 3368999999841               123568888888875   7899999996


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      .  +   .++..+++++.|+|||||++++..+
T Consensus       149 ~--~---~~~~~~l~~~~~~LkpgG~l~~~~g  175 (240)
T 1xdz_A          149 A--V---ARLSVLSELCLPLVKKNGLFVALKA  175 (240)
T ss_dssp             C--C---SCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             c--c---CCHHHHHHHHHHhcCCCCEEEEEeC
Confidence            5  2   5688999999999999999988754

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.13  E-value=3e-11  Score=127.15  Aligned_cols=90  Identities=17%  Similarity=0.241  Sum_probs=71.8

Q ss_pred             CCCCeEEEEcCC------CCHhHHHH-Hhc-CCCcEEEEecCCC------CCcEEeccCCCCCCC------CCceeEEEE
Q 010086          115 SQSAKSLCVETQ------YGQDVFAL-KEI-GVEDSIGIFKKSS------KPLVISGEGHRIPFD------GNTFDFVFV  174 (518)
Q Consensus       115 ~~~~rvLDVGcG------tG~~~~~L-~~~-g~~~v~gID~s~~------~~l~~~~da~~LPf~------D~SFD~V~s  174 (518)
                      .++.+|||||||      +|..+..+ ++. +..+|+|||+++.      ...++++|+.++||.      +++||+|+|
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVis  294 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVDELRIRTIQGDQNDAEFLDRIARRYGPFDIVID  294 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGGCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEE
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhhcCCCcEEEEecccccchhhhhhcccCCccEEEE
Confidence            467899999999      55545444 332 3469999999863      123578999999998      899999999


Q ss_pred             cCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          175 GGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ..  .|+..++.++++|+.|+|||||++++..
T Consensus       295 dg--sH~~~d~~~aL~el~rvLKPGGvlVi~D  324 (419)
T 3sso_A          295 DG--SHINAHVRTSFAALFPHVRPGGLYVIED  324 (419)
T ss_dssp             CS--CCCHHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CC--cccchhHHHHHHHHHHhcCCCeEEEEEe
Confidence            75  5777778899999999999999999964

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.13  E-value=1e-10  Score=121.75  Aligned_cols=98  Identities=18%  Similarity=0.080  Sum_probs=76.3

Q ss_pred             HHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeE
Q 010086          107 DLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDF  171 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~  171 (518)
                      .+.....+.++.+|||||||+|..+..+++.|..+|+|+|+++.               ...++.+|+++++++ ++||+
T Consensus        54 ~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~  132 (376)
T 3r0q_C           54 AVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDV  132 (376)
T ss_dssp             HHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEE
T ss_pred             HHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceE
Confidence            33344445788999999999999999998888669999999831               123568999999988 89999


Q ss_pred             EEEcCc--eeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          172 VFVGGA--RLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       172 V~s~~~--~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |++...  .+.+-.++..+++++.|+|||||++++.
T Consensus       133 Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          133 IISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             EEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             EEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence            999552  1222245778999999999999998764

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.12  E-value=1.2e-10  Score=106.18  Aligned_cols=90  Identities=10%  Similarity=0.045  Sum_probs=69.1

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC--------------C-CcEEeccCC-CCCCCCCceeEEEEc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS--------------K-PLVISGEGH-RIPFDGNTFDFVFVG  175 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~--------------~-~l~~~~da~-~LPf~D~SFD~V~s~  175 (518)
                      .++++.+|||+|||+|..+..+++. +..+++|+|+++.              + ...+.+|+. .+|..+++||+|++.
T Consensus        22 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~  101 (178)
T 3hm2_A           22 APKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIG  101 (178)
T ss_dssp             CCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEEC
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEEC
Confidence            3578889999999999999888765 3479999999741              1 124566663 344444899999998


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      .. ++|    ..+++++.|+|||||++++...
T Consensus       102 ~~-~~~----~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A          102 GG-LTA----PGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             C--TTC----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred             Cc-ccH----HHHHHHHHHhcCCCCEEEEEee
Confidence            86 766    5789999999999999998753

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.12  E-value=3.2e-10  Score=106.58  Aligned_cols=91  Identities=14%  Similarity=0.085  Sum_probs=72.9

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      .++++.+|||+|||+|..+..+++.+ ..+++|+|+++.               ...++.+|+.+.....++||+|++..
T Consensus        37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~  116 (204)
T 3e05_A           37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGG  116 (204)
T ss_dssp             TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESC
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECC
Confidence            46788999999999999998888764 469999999741               12346788766554557899999987


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      . ++   ++..+++++.|+|||||++++...
T Consensus       117 ~-~~---~~~~~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A          117 S-GG---MLEEIIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             C-TT---CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             C-Cc---CHHHHHHHHHHhcCCCeEEEEEec
Confidence            5 44   688999999999999999998753

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.12  E-value=1.7e-10  Score=111.04  Aligned_cols=122  Identities=15%  Similarity=0.122  Sum_probs=83.8

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC-------------CCcEEeccCCC---CCCCCCceeEEEE
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS-------------KPLVISGEGHR---IPFDGNTFDFVFV  174 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~-------------~~l~~~~da~~---LPf~D~SFD~V~s  174 (518)
                      .++++.+|||+|||+|..+..|++. | ..+|+|+|+++.             ...++.+|+.+   +|+.+++||+|++
T Consensus        74 ~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~  153 (233)
T 2ipx_A           74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFA  153 (233)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred             cCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEE
Confidence            4678899999999999999888764 2 368999999831             12345788876   6777899999999


Q ss_pred             cCceeeccCCh-HHHHHHHHhcccCCcEEEEEecCCC--c-cCch----hHhhhcc--CccEEEEeccCCCCCC
Q 010086          175 GGARLEKASKP-LDFASEIVRTLKPEGFAVVHVRAKD--E-YSFN----SFLDLFN--SCKLVKSRDIDGIDSS  238 (518)
Q Consensus       175 ~~~~l~~~~dp-~~~l~Ei~RVLKPGG~lvi~~~~~~--~-~s~~----~~~~lf~--~~~~v~~~~v~~~~~~  238 (518)
                      ...   . ++. ..++.++.|+|||||++++.+....  . ....    .-.+++.  .|+++....++.|..+
T Consensus       154 ~~~---~-~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~  223 (233)
T 2ipx_A          154 DVA---Q-PDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERD  223 (233)
T ss_dssp             CCC---C-TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTSSS
T ss_pred             cCC---C-ccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCccCC
Confidence            542   2 222 3458899999999999999754311  0 0000    0023333  4788887777766543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.12  E-value=1.9e-10  Score=117.46  Aligned_cols=90  Identities=16%  Similarity=0.015  Sum_probs=74.0

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCc--
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGA--  177 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~--  177 (518)
                      .++.+|||||||+|..+..+++.|..+|+|+|+++.               ...++.+|++++++++++||+|++...  
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~  116 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY  116 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence            467899999999999998888888679999999831               123568999999999999999999742  


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEE
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVV  204 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi  204 (518)
                      .+.+...+..++.++.|+|||||+++.
T Consensus       117 ~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          117 FLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             hcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            145556678899999999999999873

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.11  E-value=3e-10  Score=111.46  Aligned_cols=133  Identities=13%  Similarity=0.043  Sum_probs=86.8

Q ss_pred             CC-CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCC--CCCCceeEEEE
Q 010086          114 LS-QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIP--FDGNTFDFVFV  174 (518)
Q Consensus       114 l~-~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LP--f~D~SFD~V~s  174 (518)
                      ++ ++.+|||+|||+|..+..+++.+..+++|+|+++.                ...++.+|+.+++  +++++||+|++
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~  125 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTC  125 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEE
Confidence            56 78999999999999999888876559999999741                1235678888875  67899999999


Q ss_pred             cCceeec-----cC---------------ChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhcc--CccEEEEecc
Q 010086          175 GGARLEK-----AS---------------KPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFN--SCKLVKSRDI  232 (518)
Q Consensus       175 ~~~~l~~-----~~---------------dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~--~~~~v~~~~v  232 (518)
                      +-. +.+     ..               +...+++++.|+|||||++++......   ...+..+++  .+....+..+
T Consensus       126 npP-y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~l~~~~~~~~~~~~v  201 (259)
T 3lpm_A          126 NPP-YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPER---LLDIIDIMRKYRLEPKRIQFV  201 (259)
T ss_dssp             CCC-C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTT---HHHHHHHHHHTTEEEEEEEEE
T ss_pred             CCC-CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHH---HHHHHHHHHHCCCceEEEEEe
Confidence            643 211     11               124689999999999999998764322   233433333  3455554444


Q ss_pred             CCCCCCccceeEEEEeec
Q 010086          233 DGIDSSLPYIREIVLKKE  250 (518)
Q Consensus       233 ~~~~~~~p~~~~vv~kK~  250 (518)
                      -....+-+..-.+..+|.
T Consensus       202 ~~~~~~~~~~~l~~~~k~  219 (259)
T 3lpm_A          202 HPRSDREANTVLVEGIKD  219 (259)
T ss_dssp             ESSTTSCCSEEEEEEEET
T ss_pred             ecCCCCCcEEEEEEEEeC
Confidence            332222223334455553

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.11  E-value=1.8e-10  Score=112.95  Aligned_cols=130  Identities=14%  Similarity=0.123  Sum_probs=84.6

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC-------------CCcEEeccCCCCC---CCCCceeEEEE
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS-------------KPLVISGEGHRIP---FDGNTFDFVFV  174 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~-------------~~l~~~~da~~LP---f~D~SFD~V~s  174 (518)
                      .+++|.+|||+|||+|..+..+++. | .+.|+|+|+++.             ....+.+|+...+   ..+++||+|++
T Consensus        73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~  152 (232)
T 3id6_C           73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYV  152 (232)
T ss_dssp             SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEe
Confidence            3689999999999999999888763 3 469999999852             1124578877542   22579999999


Q ss_pred             cCceeeccCChHHHH-HHHHhcccCCcEEEEEecCCC---c-----cCchhHhhhc-cCccEEEEeccCCCCCCccceeE
Q 010086          175 GGARLEKASKPLDFA-SEIVRTLKPEGFAVVHVRAKD---E-----YSFNSFLDLF-NSCKLVKSRDIDGIDSSLPYIRE  244 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l-~Ei~RVLKPGG~lvi~~~~~~---~-----~s~~~~~~lf-~~~~~v~~~~v~~~~~~~p~~~~  244 (518)
                      ..+ +   ++..+.+ ..+.|+|||||.+++.+....   +     ........|- ..|+++....+.+|+..  ++ .
T Consensus       153 d~a-~---~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~--h~-~  225 (232)
T 3id6_C          153 DIA-Q---PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKD--HA-I  225 (232)
T ss_dssp             CCC-C---TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCSS--CE-E
T ss_pred             cCC-C---hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcCc--eE-E
Confidence            764 3   3444444 556669999999998753221   1     1111122221 35889998888887543  33 3


Q ss_pred             EEEee
Q 010086          245 IVLKK  249 (518)
Q Consensus       245 vv~kK  249 (518)
                      ++.+|
T Consensus       226 v~~~~  230 (232)
T 3id6_C          226 VLSKY  230 (232)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            45554

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.10  E-value=5.6e-11  Score=108.94  Aligned_cols=111  Identities=14%  Similarity=0.116  Sum_probs=78.7

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCC-CCCCCCceeEEEEcC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHR-IPFDGNTFDFVFVGG  176 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~-LPf~D~SFD~V~s~~  176 (518)
                      ..++.+|||+|||+|..+..+.+.+..+++|+|+++.                ...++.+|+.+ +|..+++||+|++..
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~  108 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP  108 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence            4577899999999999998888777679999999741                12245677766 465567899999976


Q ss_pred             ceeeccCChHHHHHHHH--hcccCCcEEEEEecCCCccCchhHhhhccCccEEEEec
Q 010086          177 ARLEKASKPLDFASEIV--RTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRD  231 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~--RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~  231 (518)
                      . ++. ......++.+.  |+|||||++++.......     +.....++.+...++
T Consensus       109 ~-~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~-----~~~~~~~~~~~~~~~  158 (177)
T 2esr_A          109 P-YAK-ETIVATIEALAAKNLLSEQVMVVCETDKTVL-----LPKEIATLGIWKEKI  158 (177)
T ss_dssp             S-SHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETTCC-----CCSEETTEEEEEEEE
T ss_pred             C-CCc-chHHHHHHHHHhCCCcCCCcEEEEEECCccc-----cccccCceEEEEeee
Confidence            4 432 23456677776  999999999998754432     112335566666555

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.10  E-value=1.2e-10  Score=131.36  Aligned_cols=91  Identities=12%  Similarity=0.137  Sum_probs=76.9

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCC--CcEEEEecCCC---------------------CCcEEeccCCCCCCCCCceeE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGV--EDSIGIFKKSS---------------------KPLVISGEGHRIPFDGNTFDF  171 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~--~~v~gID~s~~---------------------~~l~~~~da~~LPf~D~SFD~  171 (518)
                      .++.+|||||||+|..+..|++.+.  .+|+|||+++.                     ...++++|+.++|+++++||+
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl  799 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI  799 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence            3778999999999999999988752  69999999841                     022568999999999999999


Q ss_pred             EEEcCceeeccCChH--HHHHHHHhcccCCcEEEEEec
Q 010086          172 VFVGGARLEKASKPL--DFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       172 V~s~~~~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      |++..+ ++|++++.  .+++++.|+|||| .+++.+.
T Consensus       800 VV~~eV-LeHL~dp~l~~~L~eI~RvLKPG-~LIISTP  835 (950)
T 3htx_A          800 GTCLEV-IEHMEEDQACEFGEKVLSLFHPK-LLIVSTP  835 (950)
T ss_dssp             EEEESC-GGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred             EEEeCc-hhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence            999998 99999876  4899999999999 7666654

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.10  E-value=1.8e-10  Score=108.17  Aligned_cols=112  Identities=13%  Similarity=0.061  Sum_probs=82.8

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      ++++.+|||+|||+|..+..+++.+..+++|+|+++.               ...+..+|..+  +.+++||+|++... 
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~fD~i~~~~~-  134 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA--DVDGKFDLIVANIL-  134 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTT--TCCSCEEEEEEESC-
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccc--cCCCCceEEEECCc-
Confidence            4678999999999999998888887679999999741               13355677654  55799999999886 


Q ss_pred             eeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhc--cCccEEEEeccC
Q 010086          179 LEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLF--NSCKLVKSRDID  233 (518)
Q Consensus       179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf--~~~~~v~~~~v~  233 (518)
                      +++   ...+++++.|+|||||++++......  +...+..++  ..|+++.....+
T Consensus       135 ~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~~~~~Gf~~~~~~~~~  186 (205)
T 3grz_A          135 AEI---LLDLIPQLDSHLNEDGQVIFSGIDYL--QLPKIEQALAENSFQIDLKMRAG  186 (205)
T ss_dssp             HHH---HHHHGGGSGGGEEEEEEEEEEEEEGG--GHHHHHHHHHHTTEEEEEEEEET
T ss_pred             HHH---HHHHHHHHHHhcCCCCEEEEEecCcc--cHHHHHHHHHHcCCceEEeeccC
Confidence            665   46789999999999999988632221  123444443  357777777654

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.10  E-value=1.2e-10  Score=119.83  Aligned_cols=91  Identities=15%  Similarity=0.111  Sum_probs=73.7

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      +.++.+|||||||+|..+..+++.|..+|+|+|+++.               ...++.+|.++++++ ++||+|++... 
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~-  125 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPM-  125 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCC-
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCc-
Confidence            4578899999999999998888877679999999841               123568899998877 68999999875 


Q ss_pred             eeccCC--hHHHHHHHHhcccCCcEEEEEe
Q 010086          179 LEKASK--PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       179 l~~~~d--p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ++|+.+  ....+.++.|+|||||++++..
T Consensus       126 ~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          126 GYMLFNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             BTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             hhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence            666653  3578889999999999998653

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.09  E-value=2.4e-10  Score=105.39  Aligned_cols=110  Identities=9%  Similarity=0.022  Sum_probs=82.5

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------CCcEEeccCCCCCCCCCceeEEEEcCceeeccCCh---
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKP---  185 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp---  185 (518)
                      .++.+|||+|||+|..+..+++.+  +++|+|+++.      ...++++|+.+ |+++++||+|+++.. +++..++   
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~~~~~~~~~~d~~~-~~~~~~fD~i~~n~~-~~~~~~~~~~   97 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALESHRGGNLVRADLLC-SINQESVDVVVFNPP-YVPDTDDPII   97 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHTCSSSCEEECSTTT-TBCGGGCSEEEECCC-CBTTCCCTTT
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhcccCCeEEECChhh-hcccCCCCEEEECCC-CccCCccccc
Confidence            456799999999999999998877  9999999852      23467889887 888899999999876 7765554   


Q ss_pred             ------HHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhcc--CccEEEEec
Q 010086          186 ------LDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFN--SCKLVKSRD  231 (518)
Q Consensus       186 ------~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~--~~~~v~~~~  231 (518)
                            ..++.++.+.| |||.+++.......  ...+.++++  .|+.+.+..
T Consensus        98 ~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~--~~~l~~~l~~~gf~~~~~~~  148 (170)
T 3q87_B           98 GGGYLGREVIDRFVDAV-TVGMLYLLVIEANR--PKEVLARLEERGYGTRILKV  148 (170)
T ss_dssp             BCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGC--HHHHHHHHHHTTCEEEEEEE
T ss_pred             cCCcchHHHHHHHHhhC-CCCEEEEEEecCCC--HHHHHHHHHHCCCcEEEEEe
Confidence                  57889999999 99999887533221  233444433  456555544

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.09  E-value=1.2e-10  Score=111.44  Aligned_cols=91  Identities=14%  Similarity=0.089  Sum_probs=70.6

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCCC--CCCCceeEEEEcCc
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRIP--FDGNTFDFVFVGGA  177 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~LP--f~D~SFD~V~s~~~  177 (518)
                      ++.+|||||||+|..+..|++. +..+++|||+++.               ...++++|+.+++  |++++||.|++...
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            5789999999999999888775 3368999999841               1235688988887  89999999988653


Q ss_pred             eeeccCC--------hHHHHHHHHhcccCCcEEEEEec
Q 010086          178 RLEKASK--------PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       178 ~l~~~~d--------p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                       ..+...        ...+++++.|+|||||.+++.+.
T Consensus       118 -~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td  154 (213)
T 2fca_A          118 -DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD  154 (213)
T ss_dssp             -CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred             -CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence             222111        24789999999999999999874

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.08  E-value=2.6e-10  Score=108.26  Aligned_cols=92  Identities=15%  Similarity=0.134  Sum_probs=72.0

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC---------------CCcEEeccCCCCC--CCCCceeEEEEcC
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS---------------KPLVISGEGHRIP--FDGNTFDFVFVGG  176 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~---------------~~l~~~~da~~LP--f~D~SFD~V~s~~  176 (518)
                      +++.+|||||||+|..+..+++.. ..+++|+|+++.               ...++++|+.++|  |++++||+|++..
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~  119 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF  119 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence            467899999999999998887653 368999999741               1235689999888  8999999999976


Q ss_pred             ceeeccC--------ChHHHHHHHHhcccCCcEEEEEec
Q 010086          177 ARLEKAS--------KPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       177 ~~l~~~~--------dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      . ..+..        ....+++++.|+|||||++++.+.
T Consensus       120 ~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  157 (214)
T 1yzh_A          120 S-DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  157 (214)
T ss_dssp             C-CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             C-CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence            4 32221        124789999999999999999764

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.08  E-value=7.9e-11  Score=113.61  Aligned_cols=92  Identities=15%  Similarity=0.132  Sum_probs=69.8

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC---------------CCcEEeccCCCC-C--CCCCceeEEEEc
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS---------------KPLVISGEGHRI-P--FDGNTFDFVFVG  175 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~---------------~~l~~~~da~~L-P--f~D~SFD~V~s~  175 (518)
                      +++.+|||||||+|..+..+++.. ...++|||+++.               ...++++|+.++ |  |++++||.|++.
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            367899999999999998888753 358999999841               123467888874 4  899999999997


Q ss_pred             CceeeccCCh--------HHHHHHHHhcccCCcEEEEEec
Q 010086          176 GARLEKASKP--------LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       176 ~~~l~~~~dp--------~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      .. ..+....        ..+++++.|+|||||++++.+.
T Consensus       113 ~~-~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td  151 (218)
T 3dxy_A          113 FP-DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD  151 (218)
T ss_dssp             SC-CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CC-CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence            43 2221111        1489999999999999999874

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.08  E-value=2e-10  Score=105.53  Aligned_cols=94  Identities=17%  Similarity=0.124  Sum_probs=71.5

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCC----CCCCCCceeEEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHR----IPFDGNTFDFVFV  174 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~----LPf~D~SFD~V~s  174 (518)
                      .++.+|||+|||+|..+..+.+.+..+|+|+|+++.                ...++.+|+.+    +|+++++||+|++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  122 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  122 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence            467899999999999998777766679999999741                12345677655    2345889999999


Q ss_pred             cCceeeccCChHHHHHHH--HhcccCCcEEEEEecCCC
Q 010086          175 GGARLEKASKPLDFASEI--VRTLKPEGFAVVHVRAKD  210 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei--~RVLKPGG~lvi~~~~~~  210 (518)
                      ... ++ ..+....++++  .|+|||||++++......
T Consensus       123 ~~~-~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          123 DPP-YA-KQEIVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             CCC-GG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             CCC-CC-chhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            875 43 34566777777  999999999999875443

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.07  E-value=5.9e-10  Score=105.95  Aligned_cols=88  Identities=15%  Similarity=0.069  Sum_probs=70.3

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C--CcEEeccCCCCCCCCCceeEEEEcC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K--PLVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~--~l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      .+.++.+|||+|||+|..+..+++.+ .+|+|+|+++.              +  ..++.+|+.+.....++||+|++..
T Consensus        52 ~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~  130 (204)
T 3njr_A           52 APRRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGG  130 (204)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECS
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECC
Confidence            35788999999999999998888775 79999999741              1  2356788887433446899999876


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      + +    ++. +++++.|+|||||++++...
T Consensus       131 ~-~----~~~-~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          131 G-G----SQA-LYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             C-C----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred             c-c----cHH-HHHHHHHhcCCCcEEEEEec
Confidence            4 4    466 99999999999999998764

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.07  E-value=1.5e-10  Score=109.64  Aligned_cols=112  Identities=15%  Similarity=0.081  Sum_probs=79.9

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------------CCcEEeccCCCCC--CCCCc-eeEEEEc
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------------KPLVISGEGHRIP--FDGNT-FDFVFVG  175 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------------~~l~~~~da~~LP--f~D~S-FD~V~s~  175 (518)
                      ++.+|||+|||+|..+..+...+...|+|+|+++.                 ...++.+|+.+++  +++++ ||+|++.
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            57899999999999988766666679999999831                 1234677876653  24789 9999998


Q ss_pred             CceeeccCChHHHHHHH--HhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCCC
Q 010086          176 GARLEKASKPLDFASEI--VRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSS  238 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei--~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~  238 (518)
                      .. ++ ..+...+++++  .|+|||||++++......      +..+...+.++..+.   |+.+
T Consensus       133 ~~-~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~------~~~~~~~~~~~~~~~---yG~~  186 (201)
T 2ift_A          133 PP-FH-FNLAEQAISLLCENNWLKPNALIYVETEKDK------PLITPENWTLLKEKT---TGIV  186 (201)
T ss_dssp             CC-SS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS------CCCCCTTEEEEEEEE---ETTE
T ss_pred             CC-CC-CccHHHHHHHHHhcCccCCCcEEEEEECCCC------CccccchhHHHHHHh---cCCE
Confidence            75 54 45567888999  789999999998765432      112234566666555   5543

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.07  E-value=2.7e-10  Score=115.72  Aligned_cols=96  Identities=10%  Similarity=0.039  Sum_probs=70.1

Q ss_pred             HHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEec----CCC-------C----C--cEEec-cCCCCCCCCCcee
Q 010086          109 ISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFK----KSS-------K----P--LVISG-EGHRIPFDGNTFD  170 (518)
Q Consensus       109 ~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~----s~~-------~----~--l~~~~-da~~LPf~D~SFD  170 (518)
                      .+..+++++.+|||||||+|..+..+++.  ..|+|||+    ++.       .    +  .++++ |+..+|  +++||
T Consensus        75 ~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD  150 (305)
T 2p41_A           75 VERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCD  150 (305)
T ss_dssp             HHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCS
T ss_pred             HHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCC
Confidence            44467788999999999999999988877  48999998    321       0    1  12356 666654  67999


Q ss_pred             EEEEcCceee---ccCChH---HHHHHHHhcccCCcEEEEEecCC
Q 010086          171 FVFVGGARLE---KASKPL---DFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       171 ~V~s~~~~l~---~~~dp~---~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      +|+|..+ ++   +..+..   .++.++.|+|||||.+++.+...
T Consensus       151 ~V~sd~~-~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          151 TLLCDIG-ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             EEEECCC-CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             EEEECCc-cccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            9999764 42   222222   47899999999999998876443

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.07  E-value=6.1e-10  Score=111.09  Aligned_cols=92  Identities=9%  Similarity=0.004  Sum_probs=71.3

Q ss_pred             CCCeEEEEcCCC---CHhHHHHHhc-CCCcEEEEecCCC-------------CCcEEeccCCCCC-----------CCCC
Q 010086          116 QSAKSLCVETQY---GQDVFALKEI-GVEDSIGIFKKSS-------------KPLVISGEGHRIP-----------FDGN  167 (518)
Q Consensus       116 ~~~rvLDVGcGt---G~~~~~L~~~-g~~~v~gID~s~~-------------~~l~~~~da~~LP-----------f~D~  167 (518)
                      ...+|||||||+   |..+..+.+. ...+|+|+|+|+.             ...++.+|..+.+           ++.+
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~  156 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS  156 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence            347999999999   9887666553 2369999999741             1235677775421           3445


Q ss_pred             ceeEEEEcCceeeccCC--hHHHHHHHHhcccCCcEEEEEecC
Q 010086          168 TFDFVFVGGARLEKASK--PLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       168 SFD~V~s~~~~l~~~~d--p~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +||+|++..+ |||+++  +..+++|+.|+|||||++++....
T Consensus       157 ~~d~v~~~~v-lh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          157 RPAAIMLVGM-LHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             SCCEEEETTT-GGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             CCEEEEEech-hhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence            8999999998 999987  789999999999999999987543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.06  E-value=4.3e-10  Score=108.88  Aligned_cols=96  Identities=16%  Similarity=0.136  Sum_probs=77.1

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----------------CCcEEeccCCCCCCCCC
Q 010086          106 QDLISEGYLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----------------KPLVISGEGHRIPFDGN  167 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~  167 (518)
                      ..++....++++.+|||+|||+|..+..+++. + ..+++++|+++.                ...+..+|+.+.|++++
T Consensus        86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~  165 (258)
T 2pwy_A           86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEA  165 (258)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTT
T ss_pred             HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCC
Confidence            34444445788999999999999999888775 4 479999998731                12346789888899999


Q ss_pred             ceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          168 TFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       168 SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +||+|++.      .+++..+++++.|+|||||.+++...
T Consensus       166 ~~D~v~~~------~~~~~~~l~~~~~~L~~gG~l~~~~~  199 (258)
T 2pwy_A          166 AYDGVALD------LMEPWKVLEKAALALKPDRFLVAYLP  199 (258)
T ss_dssp             CEEEEEEE------SSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CcCEEEEC------CcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            99999983      35678899999999999999998764

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.05  E-value=1.7e-10  Score=111.84  Aligned_cols=92  Identities=15%  Similarity=0.092  Sum_probs=66.7

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCCCC-------------------cEEeccCCCCCCC-CCceeEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSSKP-------------------LVISGEGHRIPFD-GNTFDFV  172 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~~~-------------------l~~~~da~~LPf~-D~SFD~V  172 (518)
                      .+++.+|||||||+|..+..|++. ....|+|||+|+..+                   .++++|++++|.. ++.||.|
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i  101 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSI  101 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEE
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEE
Confidence            467889999999999999888753 336899999993211                   2357888888742 3667777


Q ss_pred             EEcCceee-----ccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          173 FVGGARLE-----KASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       173 ~s~~~~l~-----~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .+... ..     ...++..+++|+.|+|||||.+++.+
T Consensus       102 ~~~~~-~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A          102 SILFP-WGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             EEESC-CHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEeCC-CcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence            76542 11     12344578999999999999998844

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.05  E-value=2.7e-10  Score=111.16  Aligned_cols=94  Identities=11%  Similarity=0.085  Sum_probs=69.2

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC-------------------C--CcEEeccCCC-CC--CCCCc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS-------------------K--PLVISGEGHR-IP--FDGNT  168 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~-------------------~--~l~~~~da~~-LP--f~D~S  168 (518)
                      ..++.+|||||||+|..+..|++.. ...++|||+++.                   .  ..++++|+.. +|  |++++
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~  123 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ  123 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence            4567799999999999998888753 468999999731                   1  1256889887 78  89999


Q ss_pred             eeEEEEcCceeeccCC--------hHHHHHHHHhcccCCcEEEEEecC
Q 010086          169 FDFVFVGGARLEKASK--------PLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       169 FD~V~s~~~~l~~~~d--------p~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      ||.|++... -.|...        ...+++++.|+|||||.+++.+..
T Consensus       124 ~D~v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~  170 (235)
T 3ckk_A          124 LTKMFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV  170 (235)
T ss_dssp             EEEEEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             eeEEEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence            999987542 222110        136899999999999999998743

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.03  E-value=7.4e-11  Score=108.39  Aligned_cols=82  Identities=15%  Similarity=0.163  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEcCCCCHh--HHH-HH--hcCCCcEEEEecCCCCCcEEeccCCCCCC---CCCceeEEEEcCceeecc-CC
Q 010086          114 LSQSAKSLCVETQYGQD--VFA-LK--EIGVEDSIGIFKKSSKPLVISGEGHRIPF---DGNTFDFVFVGGARLEKA-SK  184 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~--~~~-L~--~~g~~~v~gID~s~~~~l~~~~da~~LPf---~D~SFD~V~s~~~~l~~~-~d  184 (518)
                      +++|.+|||||||+...  +.. +.  +....         ....+..+|++++|+   ++++||+|++..+ +||+ ++
T Consensus        10 ~~~g~~vL~~~~g~v~vD~s~~ml~~a~~~~~---------~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~-l~~~~~~   79 (176)
T 2ld4_A           10 ISAGQFVAVVWDKSSPVEALKGLVDKLQALTG---------NEGRVSVENIKQLLQSAHKESSFDIILSGLV-PGSTTLH   79 (176)
T ss_dssp             CCTTSEEEEEECTTSCHHHHHHHHHHHHHHTT---------TTSEEEEEEGGGGGGGCCCSSCEEEEEECCS-TTCCCCC
T ss_pred             CCCCCEEEEecCCceeeeCCHHHHHHHHHhcc---------cCcEEEEechhcCccccCCCCCEeEEEECCh-hhhcccC
Confidence            68899999999997431  111 11  11000         013456788888887   8999999999887 9999 89


Q ss_pred             hHHHHHHHHhcccCCcEEEEE
Q 010086          185 PLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       185 p~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +.++++|++|+|||||++++.
T Consensus        80 ~~~~l~~~~r~LkpgG~l~~~  100 (176)
T 2ld4_A           80 SAEILAEIARILRPGGCLFLK  100 (176)
T ss_dssp             CHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEEE
Confidence            999999999999999999885

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.03  E-value=7.8e-10  Score=113.31  Aligned_cols=96  Identities=11%  Similarity=0.036  Sum_probs=74.2

Q ss_pred             HHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-------------CCcEEeccCCCCCCCCCceeEE
Q 010086          107 DLISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGNTFDFV  172 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~SFD~V  172 (518)
                      .+.+..-++++.+|||||||+|..+..+.+. +..+++++|++..             ...++.+|.. .|+|  +||+|
T Consensus       175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v  251 (348)
T 3lst_A          175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVH  251 (348)
T ss_dssp             HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEE
T ss_pred             HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEE
Confidence            3444444677889999999999999888764 3357899997410             1124577775 4555  89999


Q ss_pred             EEcCceeeccCCh--HHHHHHHHhcccCCcEEEEEe
Q 010086          173 FVGGARLEKASKP--LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       173 ~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ++..+ +||++++  .++++++.|+|||||++++..
T Consensus       252 ~~~~v-lh~~~d~~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          252 VLKRI-LHNWGDEDSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             EEESC-GGGSCHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             EEehh-ccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99998 9999988  589999999999999998863

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.03  E-value=1.9e-10  Score=107.42  Aligned_cols=92  Identities=8%  Similarity=-0.060  Sum_probs=65.1

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCCC--------------CcEEeccCCCCCCCC-----CceeEEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSSK--------------PLVISGEGHRIPFDG-----NTFDFVFV  174 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~~--------------~l~~~~da~~LPf~D-----~SFD~V~s  174 (518)
                      .++.+|||+|||+|..+..+++.+ ..+++|+|+++..              ..++++|+.+ ++++     ++||+|++
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~  107 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVS  107 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEE
Confidence            678899999999999998888764 3599999998531              1133566665 6776     99999999


Q ss_pred             cCceee------ccCCh--------------------HHHHHHHHhcccCCcE-EEEEecC
Q 010086          175 GGARLE------KASKP--------------------LDFASEIVRTLKPEGF-AVVHVRA  208 (518)
Q Consensus       175 ~~~~l~------~~~dp--------------------~~~l~Ei~RVLKPGG~-lvi~~~~  208 (518)
                      ... ++      ++...                    ..+++++.|+|||||+ +++.+..
T Consensus       108 npp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  167 (215)
T 4dzr_A          108 NPP-YIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH  167 (215)
T ss_dssp             CCC-CCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT
T ss_pred             CCC-CCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            643 22      21111                    5778999999999999 6666643

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.03  E-value=6.6e-10  Score=104.95  Aligned_cols=89  Identities=22%  Similarity=0.256  Sum_probs=69.2

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcC-C-CcEEEEecCCC---------------CCcEEeccCCCCCCC-CCceeEEEE
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIG-V-EDSIGIFKKSS---------------KPLVISGEGHRIPFD-GNTFDFVFV  174 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g-~-~~v~gID~s~~---------------~~l~~~~da~~LPf~-D~SFD~V~s  174 (518)
                      .+.++.+|||||||+|..+..+.+.+ . .+++|+|+++.               ...+..+|... +++ +++||+|++
T Consensus        74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~v~~  152 (215)
T 2yxe_A           74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTL-GYEPLAPYDRIYT  152 (215)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGG-CCGGGCCEEEEEE
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc-CCCCCCCeeEEEE
Confidence            46788999999999999998887753 2 68999998741               12245667643 444 789999999


Q ss_pred             cCceeeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          175 GGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      ..+ ++|+.      .++.|+|||||++++.+...
T Consensus       153 ~~~-~~~~~------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          153 TAA-GPKIP------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             SSB-BSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred             CCc-hHHHH------HHHHHHcCCCcEEEEEECCC
Confidence            987 88875      48999999999999987543

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.03  E-value=1.1e-09  Score=111.12  Aligned_cols=90  Identities=11%  Similarity=0.011  Sum_probs=71.3

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCC---------------CCCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKS---------------SKPLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~---------------~~~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      +++..+|||||||+|..+..+.+. +..+++++|+..               ....++.+|.. .|+|. +||+|++.++
T Consensus       167 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v  244 (332)
T 3i53_A          167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV  244 (332)
T ss_dssp             CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence            345689999999999999888763 335899999721               01234577776 46776 8999999998


Q ss_pred             eeeccCCh--HHHHHHHHhcccCCcEEEEEe
Q 010086          178 RLEKASKP--LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       178 ~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                       +||++++  .++++++.|+|||||++++..
T Consensus       245 -lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  274 (332)
T 3i53_A          245 -LHDWDDLSAVAILRRCAEAAGSGGVVLVIE  274 (332)
T ss_dssp             -GGGSCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             -hccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence             9999886  689999999999999998863

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.03  E-value=3.9e-10  Score=103.16  Aligned_cols=88  Identities=17%  Similarity=0.188  Sum_probs=70.2

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCC-CceeEEEEcC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDG-NTFDFVFVGG  176 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D-~SFD~V~s~~  176 (518)
                      +.++.+|||+|||+|..+..+.+.+ .+++|+|+++.                ...+..+|..+ ++++ ++||+|++..
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~  108 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGG  108 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECC
Confidence            5788999999999999998888877 89999999741                11245666655 4444 6899999987


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      . +++   ...+++++.|+|||||.+++...
T Consensus       109 ~-~~~---~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A          109 S-GGE---LQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             C-TTC---HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             c-hHH---HHHHHHHHHHhcCCCcEEEEEec
Confidence            5 554   67899999999999999988754

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.02  E-value=4.6e-10  Score=113.81  Aligned_cols=88  Identities=14%  Similarity=0.191  Sum_probs=71.5

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCC--CcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGV--EDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~--~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      .++++.+|||||||+|..+..+++.+.  .+|+|+|+++.               ...++.+|..+.+.++++||+|++.
T Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~  151 (317)
T 1dl5_A           72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVT  151 (317)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred             CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEc
Confidence            467899999999999999988877542  35999999741               1234678888876678899999999


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      .. ++|+.      +++.|+|||||++++.+.
T Consensus       152 ~~-~~~~~------~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          152 VG-VDEVP------ETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             SB-BSCCC------HHHHHHEEEEEEEEEEBC
T ss_pred             CC-HHHHH------HHHHHhcCCCcEEEEEEC
Confidence            87 88875      578999999999999864

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.02  E-value=1.8e-10  Score=126.26  Aligned_cols=89  Identities=13%  Similarity=0.119  Sum_probs=73.4

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------C---CcEEeccCCCC--CCCCCceeEEEEcCc
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------K---PLVISGEGHRI--PFDGNTFDFVFVGGA  177 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~---~l~~~~da~~L--Pf~D~SFD~V~s~~~  177 (518)
                      ..+.||||||||+|.++..|++.| .+|+|||+++.            .   ..+.+++++++  ++++++||+|+|..+
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~g-a~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~  143 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKG-ATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV  143 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCC-CEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence            356799999999999999999999 79999999841            1   12457888888  688999999999998


Q ss_pred             eeeccCChHH--HHHHHHhcccCCcEEEEE
Q 010086          178 RLEKASKPLD--FASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       178 ~l~~~~dp~~--~l~Ei~RVLKPGG~lvi~  205 (518)
                       |+|+++|..  .+..+.++|+++|..++.
T Consensus       144 -~ehv~~~~~~~~~~~~~~tl~~~~~~~~~  172 (569)
T 4azs_A          144 -FHHIVHLHGIDEVKRLLSRLADVTQAVIL  172 (569)
T ss_dssp             -HHHHHHHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred             -hhcCCCHHHHHHHHHHHHHhccccceeeE
Confidence             999998864  356788899999875554

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.01  E-value=4.4e-09  Score=108.76  Aligned_cols=96  Identities=11%  Similarity=0.063  Sum_probs=75.8

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC----------------CCcEEeccCCCCCCCCCc
Q 010086          106 QDLISEGYLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNT  168 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~S  168 (518)
                      ..+.+.--++++.+|||||||+|..+..+.+.. ..+++++|+ +.                ...++.+|.. .|+|+ .
T Consensus       192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~  268 (369)
T 3gwz_A          192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-G  268 (369)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-S
T ss_pred             HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-C
Confidence            344444345677899999999999998887652 358999997 31                1234577877 67877 8


Q ss_pred             eeEEEEcCceeeccCChH--HHHHHHHhcccCCcEEEEE
Q 010086          169 FDFVFVGGARLEKASKPL--DFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ||+|++..+ +|+++++.  ++++++.|+|||||++++.
T Consensus       269 ~D~v~~~~v-lh~~~d~~~~~~L~~~~~~L~pgG~l~i~  306 (369)
T 3gwz_A          269 ADVYLIKHV-LHDWDDDDVVRILRRIATAMKPDSRLLVI  306 (369)
T ss_dssp             CSEEEEESC-GGGSCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             ceEEEhhhh-hccCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            999999998 99998876  7999999999999998885

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.01  E-value=8.3e-10  Score=108.64  Aligned_cols=100  Identities=15%  Similarity=0.181  Sum_probs=78.3

Q ss_pred             HHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC------------------CCcEEeccCCC
Q 010086          102 SSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS------------------KPLVISGEGHR  161 (518)
Q Consensus       102 ~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~------------------~~l~~~~da~~  161 (518)
                      +.....++....++++.+|||+|||+|..+..+++. + ..+++++|+++.                  ...++.+|+.+
T Consensus        85 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~  164 (280)
T 1i9g_A           85 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD  164 (280)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh
Confidence            333444444445788999999999999999888773 3 469999998731                  11346789988


Q ss_pred             CCCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          162 IPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       162 LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +++++++||+|++.      .++|..+++++.|+|||||++++.+.
T Consensus       165 ~~~~~~~~D~v~~~------~~~~~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          165 SELPDGSVDRAVLD------MLAPWEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             CCCCTTCEEEEEEE------SSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             cCCCCCceeEEEEC------CcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            89999999999983      34688999999999999999998764

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.01  E-value=5.7e-10  Score=110.53  Aligned_cols=93  Identities=13%  Similarity=0.074  Sum_probs=72.3

Q ss_pred             HHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC-----------C-----CcEEeccCCCCCCCCCce
Q 010086          108 LISEGYLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS-----------K-----PLVISGEGHRIPFDGNTF  169 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~-----------~-----~l~~~~da~~LPf~D~SF  169 (518)
                      +.+...++++.+|||+|||+|..+..+++. + ..+++|+|+++.           .     ..++.+|+.+ ++++++|
T Consensus       102 ~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~f  180 (275)
T 1yb2_A          102 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMY  180 (275)
T ss_dssp             ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCE
T ss_pred             HHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCc
Confidence            344445678899999999999999888775 2 379999999731           1     2245778877 7888999


Q ss_pred             eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          170 DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      |+|++      |++++..+++++.|+|||||++++...
T Consensus       181 D~Vi~------~~~~~~~~l~~~~~~LkpgG~l~i~~~  212 (275)
T 1yb2_A          181 DAVIA------DIPDPWNHVQKIASMMKPGSVATFYLP  212 (275)
T ss_dssp             EEEEE------CCSCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             cEEEE------cCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            99998      345788999999999999999998764

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.00  E-value=4.2e-10  Score=106.58  Aligned_cols=91  Identities=13%  Similarity=0.062  Sum_probs=71.7

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCC-CCCCCCceeEEEEcCcee
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHR-IPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~-LPf~D~SFD~V~s~~~~l  179 (518)
                      ++.+|||+|||+|..+..+...|..+|+|+|+++.               ...++++|+.+ +|+++++||+|++... +
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p-~  132 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP-F  132 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS-S
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCC-C
Confidence            57899999999999998766667679999999841               12356788776 6788899999999764 4


Q ss_pred             eccCChHHHHHHHHh--cccCCcEEEEEecC
Q 010086          180 EKASKPLDFASEIVR--TLKPEGFAVVHVRA  208 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~R--VLKPGG~lvi~~~~  208 (518)
                      + ..+...+++++.+  +|||||++++....
T Consensus       133 ~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          133 R-RGLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             S-TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             C-CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            4 4567788888865  69999999987654

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.00  E-value=9.7e-10  Score=108.12  Aligned_cols=89  Identities=11%  Similarity=0.056  Sum_probs=71.0

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCCCCC---CCceeEEEEc
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRIPFD---GNTFDFVFVG  175 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~LPf~---D~SFD~V~s~  175 (518)
                      .++.+|||||||+|..+..++.. +..+|+|+|+++.               ...++.++++++++.   +++||+|+|.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            56789999999999998887764 3469999999741               123568898888764   5899999997


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      ..     .+...+++++.|+|||||++++..+.
T Consensus       159 a~-----~~~~~ll~~~~~~LkpgG~l~~~~g~  186 (249)
T 3g89_A          159 AV-----APLCVLSELLLPFLEVGGAAVAMKGP  186 (249)
T ss_dssp             SS-----CCHHHHHHHHGGGEEEEEEEEEEECS
T ss_pred             Cc-----CCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            53     34678899999999999999887653

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.00  E-value=4.2e-09  Score=100.49  Aligned_cols=119  Identities=13%  Similarity=0.156  Sum_probs=79.7

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC-------------CCcEEeccCCCCC---CCCCceeEEEEc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS-------------KPLVISGEGHRIP---FDGNTFDFVFVG  175 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~-------------~~l~~~~da~~LP---f~D~SFD~V~s~  175 (518)
                      ++++.+|||+|||+|..+..+++. | ..+|+|+|+++.             ...++.+|+.+.+   ..+++||+|++.
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence            578899999999999999888764 4 369999999851             1234677877631   224689999986


Q ss_pred             CceeeccCCh-HHHHHHHHhcccCCcEEEEEecCCCcc--------CchhHhhhccCccEEEEeccCCCC
Q 010086          176 GARLEKASKP-LDFASEIVRTLKPEGFAVVHVRAKDEY--------SFNSFLDLFNSCKLVKSRDIDGID  236 (518)
Q Consensus       176 ~~~l~~~~dp-~~~l~Ei~RVLKPGG~lvi~~~~~~~~--------s~~~~~~lf~~~~~v~~~~v~~~~  236 (518)
                      ..   + ++. ..++.++.|+|||||++++.+......        +...+..+-..|+++.......|.
T Consensus       151 ~~---~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~f~~~~~~~~~~~~  216 (227)
T 1g8a_A          151 VA---Q-PTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIERLNLEPYE  216 (227)
T ss_dssp             CC---S-TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEEEECTTTS
T ss_pred             CC---C-HhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHHHhhceeeeEeccCccc
Confidence            42   2 233 345999999999999998875332210        112233332237788777766553

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.00  E-value=5.7e-10  Score=114.41  Aligned_cols=111  Identities=14%  Similarity=0.058  Sum_probs=80.3

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCC-CcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGV-EDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~-~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      ..++.+|||+|||+|..+..+.+.+. .+++|+|+++.              ...++.+|..+  +.+++||+|++... 
T Consensus       194 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~--~~~~~fD~Iv~~~~-  270 (343)
T 2pjd_A          194 PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFS--EVKGRFDMIISNPP-  270 (343)
T ss_dssp             TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT--TCCSCEEEEEECCC-
T ss_pred             cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccc--cccCCeeEEEECCC-
Confidence            34577999999999999988887653 48999999741              12245666654  45889999999886 


Q ss_pred             eec-----cCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEE
Q 010086          179 LEK-----ASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVK  228 (518)
Q Consensus       179 l~~-----~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~  228 (518)
                      ||+     ..++.++++++.|+|||||.+++.......+. ..+..+|.+++.+.
T Consensus       271 ~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~l~~~f~~~~~~~  324 (343)
T 2pjd_A          271 FHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP-DVLDETFGFHEVIA  324 (343)
T ss_dssp             CCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHH-HHHHHHHSCCEEEE
T ss_pred             cccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcH-HHHHHhcCceEEEe
Confidence            764     33467899999999999999998765433321 23444577665543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.99  E-value=2.5e-11  Score=116.91  Aligned_cols=87  Identities=16%  Similarity=0.145  Sum_probs=73.7

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      ++.+|||+|||+|..+..+++.| .+|+|+|+++.                ...++.+|+.+++ ++++||+|++... +
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~-~  154 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPP-W  154 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCC-C
T ss_pred             CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCC-c
Confidence            78899999999999999998887 89999999841                1235678888877 7889999999887 8


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEE
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ++..++...+.++.|+|||||++++.
T Consensus       155 ~~~~~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          155 GGPDYATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             SSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred             CCcchhhhHHHHHHhhcCCcceeHHH
Confidence            88877777888999999999996654

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.99  E-value=1.2e-09  Score=112.98  Aligned_cols=96  Identities=11%  Similarity=0.066  Sum_probs=75.3

Q ss_pred             HHHHHcC-CCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCC-------C-CCcEEeccCCCCCCCCCceeEEEEc
Q 010086          106 QDLISEG-YLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKS-------S-KPLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       106 ~~L~~~g-ll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~-------~-~~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      ..+.+.- .++++.+|||||||+|..+..+.+.+ ...++++|+..       . ...++.+|..+ |+++  ||+|++.
T Consensus       198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~v~~~  274 (372)
T 1fp1_D          198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAMILK  274 (372)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCC--EEEEEEE
T ss_pred             HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCccc-CCCC--CCEEEEe
Confidence            3444432 25677899999999999998887754 35788889721       0 12346788877 8876  9999999


Q ss_pred             CceeeccCChH--HHHHHHHhcccCCcEEEEE
Q 010086          176 GARLEKASKPL--DFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       176 ~~~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .+ |||++++.  ++++++.|+|||||++++.
T Consensus       275 ~~-lh~~~d~~~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          275 AV-CHNWSDEKCIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             SS-GGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cc-cccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            98 99999887  8999999999999998886

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.99  E-value=1.6e-09  Score=113.03  Aligned_cols=113  Identities=10%  Similarity=0.115  Sum_probs=81.5

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC------------C------CcEEeccCCCCCCCCCceeEEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS------------K------PLVISGEGHRIPFDGNTFDFVFV  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~------------~------~l~~~~da~~LPf~D~SFD~V~s  174 (518)
                      ..++.+|||+|||+|..+..+++.+ ..+|+|+|+++.            .      ..+..+|..+ ++++++||+|++
T Consensus       220 ~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~  298 (375)
T 4dcm_A          220 ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLC  298 (375)
T ss_dssp             CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEE
T ss_pred             ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEE
Confidence            3456899999999999998888764 479999999741            0      1235777776 788999999999


Q ss_pred             cCceeeccC---C--hHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEE
Q 010086          175 GGARLEKAS---K--PLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKS  229 (518)
Q Consensus       175 ~~~~l~~~~---d--p~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~  229 (518)
                      ... ||+..   +  ..++++++.|+|||||++++.......|. ..+.++|.+++++..
T Consensus       299 npp-fh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~-~~l~~~fg~~~~~a~  356 (375)
T 4dcm_A          299 NPP-FHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYF-HKLKKIFGNCTTIAT  356 (375)
T ss_dssp             CCC-C-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHH-HHHHHHHSCCEEEEE
T ss_pred             CCC-cccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHH-HHHHHhcCCEEEEee
Confidence            876 76532   2  13679999999999999999765444332 345566777766554

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.99  E-value=7.2e-10  Score=111.14  Aligned_cols=90  Identities=16%  Similarity=0.183  Sum_probs=68.5

Q ss_pred             CCCeEEEEcCCCCHh----HHHHHhc-C----CCcEEEEecCCC----------C-------------------------
Q 010086          116 QSAKSLCVETQYGQD----VFALKEI-G----VEDSIGIFKKSS----------K-------------------------  151 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~----~~~L~~~-g----~~~v~gID~s~~----------~-------------------------  151 (518)
                      ++.+|||+|||||..    +..|++. +    ..+|+|+|+|+.          +                         
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            457999999999984    4445543 3    148999999731          0                         


Q ss_pred             -----------CcEEeccCCCCCCC-CCceeEEEEcCceeeccCCh--HHHHHHHHhcccCCcEEEEEe
Q 010086          152 -----------PLVISGEGHRIPFD-GNTFDFVFVGGARLEKASKP--LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       152 -----------~l~~~~da~~LPf~-D~SFD~V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                                 ..+.++|..+.||+ ++.||+|+|.++ ++|++++  .+++++++++|||||++++..
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnv-liyf~~~~~~~vl~~~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNV-MIYFDKTTQEDILRRFVPLLKPDGLLFAGH  252 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSS-GGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCc-hHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence                       11235677777786 789999999998 9998766  589999999999999998843

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.99  E-value=8.8e-10  Score=111.27  Aligned_cols=90  Identities=18%  Similarity=0.220  Sum_probs=73.3

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      +++.+|||||||+|..+..+.+. +..+++++|++..               ...++.+|..+.|++++ ||+|++.++ 
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~-  241 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNF-  241 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESC-
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcch-
Confidence            67789999999999999888764 2358999998610               12346788888888876 999999997 


Q ss_pred             eeccCCh--HHHHHHHHhcccCCcEEEEEe
Q 010086          179 LEKASKP--LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       179 l~~~~dp--~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +||++++  .++++++.|+|||||.+++..
T Consensus       242 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  271 (335)
T 2r3s_A          242 LHHFDVATCEQLLRKIKTALAVEGKVIVFD  271 (335)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence            9998665  589999999999999887763

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.98  E-value=9.5e-10  Score=108.14  Aligned_cols=112  Identities=18%  Similarity=0.184  Sum_probs=80.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      ++++.+|||+|||+|..+..+++.|. +|+|+|+++.              ...+..+|..+ ++++++||+|+++.. .
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~-~  194 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLY-A  194 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECC-H
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh-cCcCCCCCEEEECCc-H
Confidence            57889999999999999988888885 9999999752              12344566554 356789999999763 4


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhcc--CccEEEEeccC
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFN--SCKLVKSRDID  233 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~--~~~~v~~~~v~  233 (518)
                      ++   ...++.++.|+|||||++++......  ....+..++.  .|+++.....+
T Consensus       195 ~~---~~~~l~~~~~~LkpgG~lils~~~~~--~~~~v~~~l~~~Gf~~~~~~~~~  245 (254)
T 2nxc_A          195 EL---HAALAPRYREALVPGGRALLTGILKD--RAPLVREAMAGAGFRPLEEAAEG  245 (254)
T ss_dssp             HH---HHHHHHHHHHHEEEEEEEEEEEEEGG--GHHHHHHHHHHTTCEEEEEEEET
T ss_pred             HH---HHHHHHHHHHHcCCCCEEEEEeeccC--CHHHHHHHHHHCCCEEEEEeccC
Confidence            43   45789999999999999988632111  1234444433  47777776654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.97  E-value=3.1e-09  Score=107.56  Aligned_cols=95  Identities=8%  Similarity=0.054  Sum_probs=74.1

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCCC----------------CcEEeccCCCCCCCCCc
Q 010086          106 QDLISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSSK----------------PLVISGEGHRIPFDGNT  168 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~~----------------~l~~~~da~~LPf~D~S  168 (518)
                      ..+.+..-+++ .+|||||||+|..+..+.+. +..+++++|+ +..                ..++.+|..+ |++ ++
T Consensus       158 ~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~  233 (334)
T 2ip2_A          158 HEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SN  233 (334)
T ss_dssp             HHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SS
T ss_pred             HHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CC
Confidence            34444333455 89999999999999888764 2358999998 521                1245677766 676 68


Q ss_pred             eeEEEEcCceeeccCChH--HHHHHHHhcccCCcEEEEE
Q 010086          169 FDFVFVGGARLEKASKPL--DFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ||+|++..+ +||++++.  ++++++.|+|||||++++.
T Consensus       234 ~D~v~~~~v-l~~~~~~~~~~~l~~~~~~L~pgG~l~i~  271 (334)
T 2ip2_A          234 GDIYLLSRI-IGDLDEAASLRLLGNCREAMAGDGRVVVI  271 (334)
T ss_dssp             CSEEEEESC-GGGCCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             CCEEEEchh-ccCCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            999999998 99988776  8999999999999998886

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.97  E-value=1.6e-09  Score=105.16  Aligned_cols=97  Identities=14%  Similarity=0.137  Sum_probs=75.6

Q ss_pred             HHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC--------------C--CcEEeccCCCCCCC
Q 010086          104 VFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS--------------K--PLVISGEGHRIPFD  165 (518)
Q Consensus       104 l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~--------------~--~l~~~~da~~LPf~  165 (518)
                      ....+.....++++.+|||+|||+|..+..+++. + ..+++|+|+++.              +  ..+..+|+.+ +++
T Consensus        81 ~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~  159 (255)
T 3mb5_A           81 DAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE-GIE  159 (255)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG-CCC
T ss_pred             HHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh-ccC
Confidence            3334444455788999999999999999888775 4 479999999741              1  2345778775 488


Q ss_pred             CCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          166 GNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       166 D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +++||+|++.      .+++..+++++.|+|||||++++...
T Consensus       160 ~~~~D~v~~~------~~~~~~~l~~~~~~L~~gG~l~~~~~  195 (255)
T 3mb5_A          160 EENVDHVILD------LPQPERVVEHAAKALKPGGFFVAYTP  195 (255)
T ss_dssp             CCSEEEEEEC------SSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CCCcCEEEEC------CCCHHHHHHHHHHHcCCCCEEEEEEC
Confidence            9999999984      35678899999999999999988753

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.96  E-value=2.4e-09  Score=109.89  Aligned_cols=98  Identities=16%  Similarity=0.049  Sum_probs=77.8

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC--------------C--CcEEeccCCCCCCCCC
Q 010086          105 FQDLISEGYLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS--------------K--PLVISGEGHRIPFDGN  167 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~--------------~--~l~~~~da~~LPf~D~  167 (518)
                      .+.+++.-.++++.+|||||||+|..+..+.+.. ..+++++|+ +.              .  ..++.+|..+.|+++.
T Consensus       179 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  257 (359)
T 1x19_A          179 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA  257 (359)
T ss_dssp             HHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC
T ss_pred             HHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC
Confidence            3445544446778899999999999998887653 358999998 41              1  2346789888888876


Q ss_pred             ceeEEEEcCceeeccCC--hHHHHHHHHhcccCCcEEEEEe
Q 010086          168 TFDFVFVGGARLEKASK--PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       168 SFD~V~s~~~~l~~~~d--p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                        |+|++..+ +||+++  +.++++++.|+|||||++++..
T Consensus       258 --D~v~~~~v-lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          258 --DAVLFCRI-LYSANEQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             --SEEEEESC-GGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             --CEEEEech-hccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence              99999998 999987  6789999999999999987753

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.96  E-value=7.9e-10  Score=107.59  Aligned_cols=89  Identities=16%  Similarity=0.219  Sum_probs=70.3

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC-----------------------CCcEEeccCCC-CC--CC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS-----------------------KPLVISGEGHR-IP--FD  165 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~-----------------------~~l~~~~da~~-LP--f~  165 (518)
                      .++++.+|||||||+|..+..+++.+ ..+++|||+++.                       ...++.+|+.+ +|  |+
T Consensus        46 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~  125 (246)
T 2vdv_E           46 QMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE  125 (246)
T ss_dssp             CBSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSC
T ss_pred             cCCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcc
Confidence            35678899999999999998888765 348999998731                       11256788886 77  88


Q ss_pred             CCceeEEEEcCceeeccCCh-------------HHHHHHHHhcccCCcEEEEEec
Q 010086          166 GNTFDFVFVGGARLEKASKP-------------LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       166 D~SFD~V~s~~~~l~~~~dp-------------~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +++||.|+...      ++|             ..+++++.|+|||||++++.+.
T Consensus       126 ~~~~d~v~~~~------p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td  174 (246)
T 2vdv_E          126 KGQLSKMFFCF------PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD  174 (246)
T ss_dssp             TTCEEEEEEES------CCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ccccCEEEEEC------CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence            99999998643      334             3789999999999999999764

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.96  E-value=1.2e-09  Score=111.36  Aligned_cols=89  Identities=18%  Similarity=0.097  Sum_probs=66.7

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-CC-CcEEEEecCCC--------------------------CCcEEeccCCCC--
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-GV-EDSIGIFKKSS--------------------------KPLVISGEGHRI--  162 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g~-~~v~gID~s~~--------------------------~~l~~~~da~~L--  162 (518)
                      .+.++.+|||+|||+|..+..+++. |. .+|+|+|+++.                          ...+..+|+.++  
T Consensus       102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~  181 (336)
T 2b25_A          102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  181 (336)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence            4678999999999999999888775 54 68999999741                          123457888877  


Q ss_pred             CCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          163 PFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       163 Pf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++++++||+|++..      .+|..++.++.|+|||||++++...
T Consensus       182 ~~~~~~fD~V~~~~------~~~~~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          182 DIKSLTFDAVALDM------LNPHVTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             ------EEEEEECS------SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred             ccCCCCeeEEEECC------CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            67888999999854      3456689999999999999998764

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.95  E-value=1.1e-09  Score=105.71  Aligned_cols=89  Identities=24%  Similarity=0.275  Sum_probs=69.4

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCc-eeEEEEcC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNT-FDFVFVGG  176 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~S-FD~V~s~~  176 (518)
                      .++++.+|||||||+|..+..+++.+..+++|+|+++.               ...+..+|. ..++++++ ||+|++..
T Consensus        88 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~  166 (235)
T 1jg1_A           88 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTA  166 (235)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECS
T ss_pred             CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECC
Confidence            36788999999999999998887653279999998741               122456776 56777665 99999988


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      + ++++.      .++.|+|||||++++.+...
T Consensus       167 ~-~~~~~------~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          167 G-APKIP------EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             B-BSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred             c-HHHHH------HHHHHhcCCCcEEEEEEecC
Confidence            7 88764      47899999999999988643

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.95  E-value=1.7e-09  Score=111.08  Aligned_cols=95  Identities=19%  Similarity=0.068  Sum_probs=73.2

Q ss_pred             HHHcCCCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC----------------CCcEEeccCCCCCCCCCcee
Q 010086          108 LISEGYLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFD  170 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD  170 (518)
                      +.+..-++++.+|||||||+|..+..+.+.. ..+++++|+ +.                ...++.+|..+ +++++ ||
T Consensus       174 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D  250 (374)
T 1qzz_A          174 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPVT-AD  250 (374)
T ss_dssp             HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCC-EE
T ss_pred             HHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCC-CC
Confidence            3333335678899999999999998887753 358999997 31                12346777765 55554 99


Q ss_pred             EEEEcCceeeccCChH--HHHHHHHhcccCCcEEEEEe
Q 010086          171 FVFVGGARLEKASKPL--DFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +|++..+ +||++++.  ++++++.|+|||||++++..
T Consensus       251 ~v~~~~v-l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (374)
T 1qzz_A          251 VVLLSFV-LLNWSDEDALTILRGCVRALEPGGRLLVLD  287 (374)
T ss_dssp             EEEEESC-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEecc-ccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            9999998 99998875  89999999999999988753

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.95  E-value=1.7e-09  Score=105.43  Aligned_cols=86  Identities=13%  Similarity=0.227  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc----C-CCcEEEEecCCCC----------CcEEeccCCCC---CCCC-CceeEEEEcC
Q 010086          116 QSAKSLCVETQYGQDVFALKEI----G-VEDSIGIFKKSSK----------PLVISGEGHRI---PFDG-NTFDFVFVGG  176 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~----g-~~~v~gID~s~~~----------~l~~~~da~~L---Pf~D-~SFD~V~s~~  176 (518)
                      ++.+|||||||+|..+..|++.    + ..+|+|||+++..          ..++++|+.++   |+.+ ++||+|++..
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~  160 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  160 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence            4679999999999999888765    2 3699999998631          22467888884   6644 4899999866


Q ss_pred             ceeeccCChHHHHHHHHh-cccCCcEEEEE
Q 010086          177 ARLEKASKPLDFASEIVR-TLKPEGFAVVH  205 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~R-VLKPGG~lvi~  205 (518)
                      +   | .++..++.|+.| +|||||++++.
T Consensus       161 ~---~-~~~~~~l~~~~r~~LkpGG~lv~~  186 (236)
T 2bm8_A          161 A---H-ANTFNIMKWAVDHLLEEGDYFIIE  186 (236)
T ss_dssp             S---C-SSHHHHHHHHHHHTCCTTCEEEEC
T ss_pred             c---h-HhHHHHHHHHHHhhCCCCCEEEEE
Confidence            3   3 367789999998 99999999995

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.94  E-value=1.9e-09  Score=98.04  Aligned_cols=85  Identities=14%  Similarity=0.140  Sum_probs=70.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      +.++.+|||+|||+|..+..+.+ +..+++|+|+++.               ...++.+|..+ ++++++||+|++... 
T Consensus        33 ~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~-  109 (183)
T 2yxd_A           33 LNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT-  109 (183)
T ss_dssp             CCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC-
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc-
Confidence            56788999999999999988887 4479999998741               12345778777 888899999999873 


Q ss_pred             eeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          179 LEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                          .++..+++++.|+  |||.+++...
T Consensus       110 ----~~~~~~l~~~~~~--~gG~l~~~~~  132 (183)
T 2yxd_A          110 ----KNIEKIIEILDKK--KINHIVANTI  132 (183)
T ss_dssp             ----SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred             ----ccHHHHHHHHhhC--CCCEEEEEec
Confidence                5688999999999  9999999764

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.94  E-value=6.7e-09  Score=102.38  Aligned_cols=95  Identities=8%  Similarity=-0.010  Sum_probs=71.2

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC--------------C-----CcEEeccCCCC-------CCCC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS--------------K-----PLVISGEGHRI-------PFDG  166 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~--------------~-----~l~~~~da~~L-------Pf~D  166 (518)
                      ++++.+|||+|||+|..+..+++.. ..+++|+|+++.              .     ..++.+|..++       ++++
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence            4577899999999999998887753 368999999731              1     22567888877       4789


Q ss_pred             CceeEEEEcCceee----------------c-cCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          167 NTFDFVFVGGARLE----------------K-ASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       167 ~SFD~V~s~~~~l~----------------~-~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      ++||+|+++--++.                . ......+++++.|+|||||++++....
T Consensus       114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  172 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP  172 (260)
T ss_dssp             TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence            99999999732111                1 123567899999999999999887643

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.94  E-value=1.4e-09  Score=103.62  Aligned_cols=88  Identities=24%  Similarity=0.346  Sum_probs=70.4

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-CC-CcEEEEecCCC--------------------CCcEEeccCCCCCCCCCceeE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-GV-EDSIGIFKKSS--------------------KPLVISGEGHRIPFDGNTFDF  171 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g~-~~v~gID~s~~--------------------~~l~~~~da~~LPf~D~SFD~  171 (518)
                      ++++.+|||||||+|..+..+++. |. .+++|+|+++.                    ...++.+|+...+.++++||+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            678899999999999999888764 42 58999998741                    123457888777777889999


Q ss_pred             EEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      |++... ++++      ++++.|+|||||++++.+..
T Consensus       155 i~~~~~-~~~~------~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          155 IHVGAA-APVV------PQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EEECSB-BSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred             EEECCc-hHHH------HHHHHHhcCCCcEEEEEEec
Confidence            999886 7665      46899999999999998753

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.94  E-value=2.7e-10  Score=102.87  Aligned_cols=92  Identities=13%  Similarity=0.136  Sum_probs=69.4

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCC-CCC-C--CCceeEEEEcC
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHR-IPF-D--GNTFDFVFVGG  176 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~-LPf-~--D~SFD~V~s~~  176 (518)
                      +++.+|||+|||+|..+..+++.+. .++|+|+++.              ...++.+|+.+ ++. +  +++||+|++..
T Consensus        40 ~~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cCCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            4678999999999999988888774 5999999741              23455677665 332 2  35899999987


Q ss_pred             ceeeccCChHHHHHHHH--hcccCCcEEEEEecCCC
Q 010086          177 ARLEKASKPLDFASEIV--RTLKPEGFAVVHVRAKD  210 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~--RVLKPGG~lvi~~~~~~  210 (518)
                      . ++  .+...+++++.  |+|||||++++......
T Consensus       119 ~-~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A          119 P-YA--MDLAALFGELLASGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             C-TT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred             C-Cc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence            5 54  45667777777  99999999999875443

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.93  E-value=1.4e-09  Score=115.75  Aligned_cols=102  Identities=13%  Similarity=0.001  Sum_probs=73.6

Q ss_pred             HHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------------------CC--cEEe
Q 010086          102 SSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------------------KP--LVIS  156 (518)
Q Consensus       102 ~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------------------~~--l~~~  156 (518)
                      +.++..+++...++++.+|||||||+|..+..+++. |...|+|||+++.                      ..  .++.
T Consensus       228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~  307 (433)
T 1u2z_A          228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  307 (433)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE
Confidence            344444555445678999999999999999888874 6568999998742                      01  1234


Q ss_pred             ccCCCC--CC--CCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          157 GEGHRI--PF--DGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       157 ~da~~L--Pf--~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ++....  +|  .+++||+|+++.. + +.+++..+++|+.|+|||||++++.
T Consensus       308 gD~~~~~~~~~~~~~~FDvIvvn~~-l-~~~d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          308 KKSFVDNNRVAELIPQCDVILVNNF-L-FDEDLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             SSCSTTCHHHHHHGGGCSEEEECCT-T-CCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cCccccccccccccCCCCEEEEeCc-c-ccccHHHHHHHHHHhCCCCeEEEEe
Confidence            544332  23  3689999999765 4 3356678899999999999999885

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.93  E-value=2.9e-09  Score=108.55  Aligned_cols=98  Identities=12%  Similarity=0.066  Sum_probs=75.0

Q ss_pred             HHHHcCCCCC-CCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCCC-CCCCc
Q 010086          107 DLISEGYLSQ-SAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRIP-FDGNT  168 (518)
Q Consensus       107 ~L~~~gll~~-~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~LP-f~D~S  168 (518)
                      .+++.--+.+ +.+|||||||+|..+..+.+. +..+++++|+...               ...++.+|..+.+ +.++.
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  248 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGA  248 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCC
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCC
Confidence            4444433455 789999999999999888764 3368999998320               0224577877765 24566


Q ss_pred             eeEEEEcCceeeccCCh--HHHHHHHHhcccCCcEEEEE
Q 010086          169 FDFVFVGGARLEKASKP--LDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ||+|++..+ +||++++  .++++++.|+|||||++++.
T Consensus       249 ~D~v~~~~v-lh~~~~~~~~~~l~~~~~~L~pgG~l~i~  286 (352)
T 3mcz_A          249 ADVVMLNDC-LHYFDAREAREVIGHAAGLVKPGGALLIL  286 (352)
T ss_dssp             EEEEEEESC-GGGSCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccEEEEecc-cccCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            999999998 9999876  68999999999999998886

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.92  E-value=6.3e-09  Score=105.21  Aligned_cols=118  Identities=10%  Similarity=0.025  Sum_probs=77.4

Q ss_pred             HHHHHHHHH-HcCCCCCCCeEEEEcCCC------CHhHHHHHhcC-CCcEEEEecCCC--CCcE-EeccCCCCCCCCCce
Q 010086          101 YSSVFQDLI-SEGYLSQSAKSLCVETQY------GQDVFALKEIG-VEDSIGIFKKSS--KPLV-ISGEGHRIPFDGNTF  169 (518)
Q Consensus       101 ~~~l~~~L~-~~gll~~~~rvLDVGcGt------G~~~~~L~~~g-~~~v~gID~s~~--~~l~-~~~da~~LPf~D~SF  169 (518)
                      ++.+.+.+. ....++++.+|||+|||+      |. ....+..+ ...|+|+|+++.  ...+ +++|+.++|++ ++|
T Consensus        47 y~~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~v~~v~~~i~gD~~~~~~~-~~f  124 (290)
T 2xyq_A           47 YTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHTA-NKW  124 (290)
T ss_dssp             HHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGCCCS-SCE
T ss_pred             HHHHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCCCCCCEEEEECccccCCcc-Ccc
Confidence            444444432 234578899999999955      55 22223344 368999999974  2346 88999998876 789


Q ss_pred             eEEEEcCceeec--------c---CChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccC
Q 010086          170 DFVFVGGARLEK--------A---SKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNS  223 (518)
Q Consensus       170 D~V~s~~~~l~~--------~---~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~  223 (518)
                      |+|+|..+ .++        .   .....+++++.|+|||||.+++.+......  ..+..+++.
T Consensus       125 D~Vvsn~~-~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~--~~l~~~l~~  186 (290)
T 2xyq_A          125 DLIISDMY-DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN--ADLYKLMGH  186 (290)
T ss_dssp             EEEEECCC-CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC--HHHHHHHTT
T ss_pred             cEEEEcCC-ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCH--HHHHHHHHH
Confidence            99999642 111        0   112368999999999999999965433222  345555444

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.92  E-value=6.7e-09  Score=107.53  Aligned_cols=88  Identities=11%  Similarity=0.031  Sum_probs=70.8

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCC------C--CCcEEeccCCCCCCCCCceeEEEEcCceeeccCC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKS------S--KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASK  184 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~------~--~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~d  184 (518)
                      +++..+|||||||+|..+..+.+. +..+++++|+..      .  ...++.+|..+ |+|++  |+|++..+ +||+++
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~v~~~~v-lh~~~~  276 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFD-GVPKG--DAIFIKWI-CHDWSD  276 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESC-GGGBCH
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCC-CCCCC--CEEEEech-hhcCCH
Confidence            566789999999999999888764 335899999731      0  12356788877 88876  99999998 999987


Q ss_pred             hH--HHHHHHHhcccCCcEEEEE
Q 010086          185 PL--DFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       185 p~--~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +.  ++++++.|+|||||++++.
T Consensus       277 ~~~~~~l~~~~~~L~pgG~l~i~  299 (368)
T 3reo_A          277 EHCLKLLKNCYAALPDHGKVIVA  299 (368)
T ss_dssp             HHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEE
Confidence            64  6899999999999998886

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.92  E-value=2.9e-09  Score=103.84  Aligned_cols=84  Identities=10%  Similarity=0.019  Sum_probs=58.6

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC--------CcEE----------e-ccCCCCCCCCCceeEEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK--------PLVI----------S-GEGHRIPFDGNTFDFVFV  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~--------~l~~----------~-~da~~LPf~D~SFD~V~s  174 (518)
                      ..++.+|||||||||..+..|.+.|..+|+|||+++..        +.+.          . ++....+|++.+||++++
T Consensus        35 ~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~  114 (232)
T 3opn_A           35 EINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFI  114 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSS
T ss_pred             CCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhh
Confidence            34567999999999999988888886699999998631        1110          0 122111234455665544


Q ss_pred             cCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          175 GGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .         ...+++|+.|+|||||.+++.+
T Consensus       115 ~---------l~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          115 S---------LDLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             C---------GGGTHHHHHHHSCTTCEEEEEE
T ss_pred             h---------HHHHHHHHHHhccCCCEEEEEE
Confidence            2         2578999999999999998864

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.91  E-value=1.9e-09  Score=111.34  Aligned_cols=89  Identities=10%  Similarity=0.048  Sum_probs=71.0

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCC-----------C----CCcEEeccCCCC--CCCCCceeEEEEcC
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKS-----------S----KPLVISGEGHRI--PFDGNTFDFVFVGG  176 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~-----------~----~~l~~~~da~~L--Pf~D~SFD~V~s~~  176 (518)
                      ....+|||||||+|..+..+.+. +..+++++|+..           .    ...++.+|..+.  |+| ++||+|++..
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~  256 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ  256 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence            35679999999999999888763 235899999731           0    123467888775  677 8899999999


Q ss_pred             ceeeccCChH--HHHHHHHhcccCCcEEEEE
Q 010086          177 ARLEKASKPL--DFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       177 ~~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~  205 (518)
                      + +|+++++.  ++++++.|+|||||.+++.
T Consensus       257 v-lh~~~~~~~~~~l~~~~~~L~pgG~l~i~  286 (363)
T 3dp7_A          257 F-LDCFSEEEVISILTRVAQSIGKDSKVYIM  286 (363)
T ss_dssp             C-STTSCHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             h-hhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            8 99988764  6799999999999998885

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.91  E-value=2.1e-09  Score=107.10  Aligned_cols=88  Identities=14%  Similarity=0.120  Sum_probs=71.5

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C--CcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K--PLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~--~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      ++++.+|||+|||+|..+..+++.|...|+|+|+++.              .  ..++.+|+.+++. +++||+|++...
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p  201 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV  201 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc
Confidence            5778999999999999999888877447999999841              1  2256899999877 889999998542


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                           .....++.++.|+|||||++++...
T Consensus       202 -----~~~~~~l~~~~~~LkpgG~l~~~~~  226 (278)
T 2frn_A          202 -----VRTHEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             -----SSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             -----hhHHHHHHHHHHHCCCCeEEEEEEe
Confidence                 2346789999999999999988643

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.90  E-value=3.1e-09  Score=101.69  Aligned_cols=87  Identities=22%  Similarity=0.378  Sum_probs=69.2

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHh-cCC------CcEEEEecCCC--------------------CCcEEeccCCCCCCCC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKE-IGV------EDSIGIFKKSS--------------------KPLVISGEGHRIPFDG  166 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~-~g~------~~v~gID~s~~--------------------~~l~~~~da~~LPf~D  166 (518)
                      ++++.+|||||||+|..+..+++ .+.      .+|+|+|+++.                    ...++.+|+.. ++++
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~  160 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPP  160 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCc
Confidence            67889999999999999988776 332      48999998741                    12245677776 6766


Q ss_pred             -CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          167 -NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       167 -~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                       ++||+|++..+ ++|+.      +++.++|||||++++.+..
T Consensus       161 ~~~fD~I~~~~~-~~~~~------~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          161 NAPYNAIHVGAA-APDTP------TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             GCSEEEEEECSC-BSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred             CCCccEEEECCc-hHHHH------HHHHHHhcCCCEEEEEEec
Confidence             89999999887 77753      7899999999999998864

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.90  E-value=4.2e-09  Score=107.90  Aligned_cols=87  Identities=10%  Similarity=0.028  Sum_probs=71.2

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------CCcEEeccCCCCCCCCCceeEEEEcCceeeccC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKAS  183 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~  183 (518)
                      ++++.+|||||||+|..+..+.+. +..+++++|+ +.         ...++.+|..+ |+|+  ||+|++..+ |||++
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~--~D~v~~~~~-lh~~~  260 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFT-SIPN--ADAVLLKYI-LHNWT  260 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTT-CCCC--CSEEEEESC-GGGSC
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccccC-CCCC--ccEEEeehh-hccCC
Confidence            456789999999999999888764 3358999998 31         12345778766 7764  999999998 99999


Q ss_pred             ChH--HHHHHHHhcccC---CcEEEEE
Q 010086          184 KPL--DFASEIVRTLKP---EGFAVVH  205 (518)
Q Consensus       184 dp~--~~l~Ei~RVLKP---GG~lvi~  205 (518)
                      ++.  ++++++.|+|||   ||++++.
T Consensus       261 d~~~~~~l~~~~~~L~p~~~gG~l~i~  287 (352)
T 1fp2_A          261 DKDCLRILKKCKEAVTNDGKRGKVTII  287 (352)
T ss_dssp             HHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            887  899999999999   9998886

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.89  E-value=2.1e-09  Score=115.68  Aligned_cols=91  Identities=15%  Similarity=0.124  Sum_probs=72.2

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC---------------CCCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS---------------SKPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~---------------~~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      ..++.+|||||||+|..+..+++.|..+|+|+|+++               ....++.+|.++++++ ++||+|+|... 
T Consensus       156 ~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~-  233 (480)
T 3b3j_A          156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPM-  233 (480)
T ss_dssp             GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCC-
T ss_pred             hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCc-
Confidence            456789999999999999888887767999999974               0123568899888876 58999999764 


Q ss_pred             eeccCCh--HHHHHHHHhcccCCcEEEEEe
Q 010086          179 LEKASKP--LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       179 l~~~~dp--~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ++|..+.  ...+.++.|+|||||++++..
T Consensus       234 ~~~~~~e~~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          234 GYMLFNERMLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             HHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred             hHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            5666544  467789999999999998643

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.88  E-value=5.3e-09  Score=107.00  Aligned_cols=89  Identities=15%  Similarity=0.114  Sum_probs=70.4

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      -++++.+|||||||+|..+..+.+.+ ...++++|+ +.                ...++.+|..+ +++++ ||+|++.
T Consensus       180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D~v~~~  256 (360)
T 1tw3_A          180 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPRK-ADAIILS  256 (360)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSSC-EEEEEEE
T ss_pred             CCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCCC-ccEEEEc
Confidence            35678899999999999998887653 358999996 31                12345777755 55554 9999999


Q ss_pred             CceeeccCChH--HHHHHHHhcccCCcEEEEE
Q 010086          176 GARLEKASKPL--DFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       176 ~~~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .+ +||++++.  ++++++.|+|||||++++.
T Consensus       257 ~v-l~~~~~~~~~~~l~~~~~~L~pgG~l~i~  287 (360)
T 1tw3_A          257 FV-LLNWPDHDAVRILTRCAEALEPGGRILIH  287 (360)
T ss_dssp             SC-GGGSCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cc-ccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            98 99998774  7899999999999998876

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.88  E-value=5.9e-09  Score=100.23  Aligned_cols=93  Identities=12%  Similarity=0.094  Sum_probs=72.8

Q ss_pred             HHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeE
Q 010086          108 LISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDF  171 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~  171 (518)
                      +.....+.++.+|||+|||+|..+..+++.+ .+++++|+++.                ...+..+|..+..+++++||+
T Consensus        83 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~  161 (248)
T 2yvl_A           83 IALKLNLNKEKRVLEFGTGSGALLAVLSEVA-GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHA  161 (248)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSE
T ss_pred             HHHhcCCCCCCEEEEeCCCccHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccE
Confidence            3344446788999999999999998887764 79999998741                122456777775447889999


Q ss_pred             EEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      |++..      ++|..+++++.|+|||||.+++...
T Consensus       162 v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          162 AFVDV------REPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             EEECS------SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             EEECC------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            99842      4678899999999999999999875

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.88  E-value=1.1e-08  Score=105.77  Aligned_cols=88  Identities=13%  Similarity=0.081  Sum_probs=71.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCC------C--CCcEEeccCCCCCCCCCceeEEEEcCceeeccCC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKS------S--KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASK  184 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~------~--~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~d  184 (518)
                      +++..+|||||||+|..+..+.+. +..+++++|+..      .  ...++.+|..+ |+|++  |+|++..+ +||+++
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~v~~~~v-lh~~~d  274 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFK-EVPSG--DTILMKWI-LHDWSD  274 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESC-GGGSCH
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCC-CCCCC--CEEEehHH-hccCCH
Confidence            567789999999999999888763 335899999831      0  12356788887 88876  99999998 999876


Q ss_pred             hH--HHHHHHHhcccCCcEEEEE
Q 010086          185 PL--DFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       185 p~--~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +.  +++++++|+|||||++++.
T Consensus       275 ~~~~~~L~~~~~~L~pgG~l~i~  297 (364)
T 3p9c_A          275 QHCATLLKNCYDALPAHGKVVLV  297 (364)
T ss_dssp             HHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEE
Confidence            53  7899999999999998886

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.88  E-value=3.6e-09  Score=100.81  Aligned_cols=89  Identities=15%  Similarity=0.161  Sum_probs=71.1

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCC------CcEEEEecCCC--------------------CCcEEeccCCCCC---
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGV------EDSIGIFKKSS--------------------KPLVISGEGHRIP---  163 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~------~~v~gID~s~~--------------------~~l~~~~da~~LP---  163 (518)
                      .++++.+|||||||+|..+..+++...      .+++|+|+++.                    ...++.+|+.+.+   
T Consensus        77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  156 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE  156 (227)
T ss_dssp             TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred             hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence            367889999999999999988877532      48999998731                    1234678887766   


Q ss_pred             -CCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          164 -FDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       164 -f~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                       +++++||+|++... ++++      ++++.++|||||++++.+..
T Consensus       157 ~~~~~~fD~I~~~~~-~~~~------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          157 KKELGLFDAIHVGAS-ASEL------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HHHHCCEEEEEECSB-BSSC------CHHHHHHEEEEEEEEEEEEE
T ss_pred             CccCCCcCEEEECCc-hHHH------HHHHHHhcCCCcEEEEEEcc
Confidence             67889999999886 7765      47889999999999998754

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.87  E-value=3.9e-09  Score=102.67  Aligned_cols=89  Identities=10%  Similarity=0.041  Sum_probs=65.6

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc---CCCcEEEEecCCC-----------C-----------------------------
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI---GVEDSIGIFKKSS-----------K-----------------------------  151 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~---g~~~v~gID~s~~-----------~-----------------------------  151 (518)
                      .++.+|||+|||+|..+..+++.   +..+++|+|+++.           .                             
T Consensus        50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (250)
T 1o9g_A           50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  129 (250)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence            35679999999999998877764   2358999999741           1                             


Q ss_pred             ----Cc-------------EEeccCCCCCC------CCCceeEEEEcCceeeccCC---------hHHHHHHHHhcccCC
Q 010086          152 ----PL-------------VISGEGHRIPF------DGNTFDFVFVGGARLEKASK---------PLDFASEIVRTLKPE  199 (518)
Q Consensus       152 ----~l-------------~~~~da~~LPf------~D~SFD~V~s~~~~l~~~~d---------p~~~l~Ei~RVLKPG  199 (518)
                          ..             +.++|..+ ++      ++++||+|+|... +.+..+         ...+++++.|+||||
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~fD~Iv~npp-~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  207 (250)
T 1o9g_A          130 AARRLRERLTAEGGALPCAIRTADVFD-PRALSAVLAGSAPDVVLTDLP-YGERTHWEGQVPGQPVAGLLRSLASALPAH  207 (250)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTC-GGGHHHHHTTCCCSEEEEECC-GGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred             hhhhhhhhccccccccccceeeccccc-ccccccccCCCCceEEEeCCC-eeccccccccccccHHHHHHHHHHHhcCCC
Confidence                11             66677765 33      4558999999764 333322         347899999999999


Q ss_pred             cEEEEE
Q 010086          200 GFAVVH  205 (518)
Q Consensus       200 G~lvi~  205 (518)
                      |++++.
T Consensus       208 G~l~~~  213 (250)
T 1o9g_A          208 AVIAVT  213 (250)
T ss_dssp             CEEEEE
T ss_pred             cEEEEe
Confidence            999983

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.85  E-value=4.6e-09  Score=103.84  Aligned_cols=95  Identities=13%  Similarity=0.119  Sum_probs=74.2

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----------------CCcEEeccCCCCCCCCC
Q 010086          106 QDLISEGYLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----------------KPLVISGEGHRIPFDGN  167 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~  167 (518)
                      ..++....+.++.+|||+|||+|..+..+++. + ..+++++|+++.                ...+..+|..+. ++++
T Consensus       102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~  180 (277)
T 1o54_A          102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEK  180 (277)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCC
T ss_pred             HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCC
Confidence            34444445788999999999999999888765 4 469999998741                112456777765 7888


Q ss_pred             ceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          168 TFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       168 SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +||+|++.      .++|..+++++.|+|||||++++...
T Consensus       181 ~~D~V~~~------~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          181 DVDALFLD------VPDPWNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             SEEEEEEC------CSCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             ccCEEEEC------CcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            99999983      25688899999999999999998764

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.84  E-value=1.2e-08  Score=100.79  Aligned_cols=93  Identities=13%  Similarity=0.155  Sum_probs=68.6

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          115 SQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      .++.+|||+|||+|..+..+++ .+..+++|+|+++.               ...++.+|..+ ++++++||+|++..-+
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~-~~~~~~fD~Iv~npPy  186 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPY  186 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCC
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhh-hcccCCccEEEECCCC
Confidence            5678999999999999988875 34479999999841               12345677765 4567899999997320


Q ss_pred             ------------eecc------------CChHHHHHHHHhcccCCcEEEEEecC
Q 010086          179 ------------LEKA------------SKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       179 ------------l~~~------------~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                                  ++|-            .+...+++++.|+|||||++++..+.
T Consensus       187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~  240 (276)
T 2b3t_A          187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW  240 (276)
T ss_dssp             BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS
T ss_pred             CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence                        2221            12357889999999999999998653

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.83  E-value=2.2e-09  Score=107.01  Aligned_cols=118  Identities=14%  Similarity=0.095  Sum_probs=74.3

Q ss_pred             hhccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEec-CCC--------------
Q 010086           86 RDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFK-KSS--------------  150 (518)
Q Consensus        86 ~~~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~-s~~--------------  150 (518)
                      ..+|...-|.....+    .+.+.......++.+|||||||+|..+..+++.|..+|+|+|+ ++.              
T Consensus        53 ~~~~g~~~~~~~~~l----~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~  128 (281)
T 3bzb_A           53 HPLWTSHVWSGARAL----ADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTA  128 (281)
T ss_dssp             ---------CHHHHH----HHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC
T ss_pred             CCCCCceeecHHHHH----HHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhh
Confidence            456666666443222    2222232223577899999999999998888887569999999 531              


Q ss_pred             C-----------CcEEeccCCC-C-CC----CCCceeEEEEcCceeeccCChHHHHHHHHhccc---C--CcEEEEEecC
Q 010086          151 K-----------PLVISGEGHR-I-PF----DGNTFDFVFVGGARLEKASKPLDFASEIVRTLK---P--EGFAVVHVRA  208 (518)
Q Consensus       151 ~-----------~l~~~~da~~-L-Pf----~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLK---P--GG~lvi~~~~  208 (518)
                      .           ..+...+..+ . .+    ++++||+|++..+ ++|..++..+++++.|+||   |  ||++++....
T Consensus       129 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dv-l~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~  207 (281)
T 3bzb_A          129 NSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADL-LSFHQAHDALLRSVKMLLALPANDPTAVALVTFTH  207 (281)
T ss_dssp             ----------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESC-CSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC
T ss_pred             hhcccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCc-ccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEe
Confidence            0           0111111111 0 11    4689999999887 8888888899999999999   9  9998776543

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.82  E-value=3.6e-09  Score=102.19  Aligned_cols=97  Identities=10%  Similarity=0.077  Sum_probs=69.3

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cC-CCcEEEEecCCC--------------C---CcEEeccCCCC-C-
Q 010086          105 FQDLISEGYLSQSAKSLCVETQYGQDVFALKE-IG-VEDSIGIFKKSS--------------K---PLVISGEGHRI-P-  163 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g-~~~v~gID~s~~--------------~---~l~~~~da~~L-P-  163 (518)
                      +..|....-.+++.+|||||||+|..+..+++ .+ ..+++++|+++.              .   ..++.+|+.+. | 
T Consensus        45 l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~  124 (221)
T 3dr5_A           45 LTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSR  124 (221)
T ss_dssp             HHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGG
T ss_pred             HHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHH
Confidence            33333332234456999999999999988876 32 369999999741              1   22456776554 3 


Q ss_pred             CCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          164 FDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       164 f~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +++++||+|++... .   .+...+++++.|+|||||++++.
T Consensus       125 ~~~~~fD~V~~d~~-~---~~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          125 LANDSYQLVFGQVS-P---MDLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             SCTTCEEEEEECCC-T---TTHHHHHHHHHHHEEEEEEEEET
T ss_pred             hcCCCcCeEEEcCc-H---HHHHHHHHHHHHHcCCCcEEEEe
Confidence            45899999998653 2   34567899999999999999984

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.81  E-value=2.6e-09  Score=101.96  Aligned_cols=89  Identities=12%  Similarity=0.131  Sum_probs=66.9

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----------------CCcEEeccCCC-CCCC-----CCcee
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----------------KPLVISGEGHR-IPFD-----GNTFD  170 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----------------~~l~~~~da~~-LPf~-----D~SFD  170 (518)
                      .++.+|||||||+|..+..+++. + ..+|+++|+++.                ...++.+|+.+ +|..     .++||
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD  136 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  136 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence            36789999999999999888873 2 369999999741                12345777644 3432     27999


Q ss_pred             EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +|++... .++..+..+++.++ |+|||||++++.
T Consensus       137 ~V~~d~~-~~~~~~~~~~~~~~-~~LkpgG~lv~~  169 (221)
T 3u81_A          137 MVFLDHW-KDRYLPDTLLLEKC-GLLRKGTVLLAD  169 (221)
T ss_dssp             EEEECSC-GGGHHHHHHHHHHT-TCCCTTCEEEES
T ss_pred             EEEEcCC-cccchHHHHHHHhc-cccCCCeEEEEe
Confidence            9999875 66665555677777 999999999885

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.81  E-value=3.4e-08  Score=101.42  Aligned_cols=104  Identities=12%  Similarity=-0.016  Sum_probs=77.5

Q ss_pred             HHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcC--CCcEEEEecCCC---------------CCcEEeccCCCCCCCC
Q 010086          104 VFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIG--VEDSIGIFKKSS---------------KPLVISGEGHRIPFDG  166 (518)
Q Consensus       104 l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g--~~~v~gID~s~~---------------~~l~~~~da~~LPf~D  166 (518)
                      +...++.....+++.++||+|||+|..+..++..+  ...++|+|+++.               ...+.++|+.++|+++
T Consensus       191 la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~  270 (354)
T 3tma_A          191 LAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF  270 (354)
T ss_dssp             HHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred             HHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence            33334444456788999999999999997777642  368999999741               2346789999999988


Q ss_pred             CceeEEEEcCceeec-cC-------ChHHHHHHHHhcccCCcEEEEEecC
Q 010086          167 NTFDFVFVGGARLEK-AS-------KPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       167 ~SFD~V~s~~~~l~~-~~-------dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      ++||+|++.-- +.. ..       ....+++++.|+|||||.+++.+..
T Consensus       271 ~~~D~Ii~npP-yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~  319 (354)
T 3tma_A          271 PEVDRILANPP-HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR  319 (354)
T ss_dssp             CCCSEEEECCC-SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             CCCCEEEECCC-CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            89999999642 211 11       1256889999999999999998764

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.80  E-value=4.9e-09  Score=101.19  Aligned_cols=87  Identities=16%  Similarity=0.283  Sum_probs=68.2

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC----------------CCcEEeccCCCC-C-CCCCceeEEEEc
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS----------------KPLVISGEGHRI-P-FDGNTFDFVFVG  175 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~----------------~~l~~~~da~~L-P-f~D~SFD~V~s~  175 (518)
                      .++.+|||||||+|..+..+++.. ..+++|+|+++.                ...++.+|+.+. | ..+++||+|++.
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~  149 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID  149 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence            367899999999999998888732 479999999741                123567888663 5 558999999986


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ..    ..+...+++++.|+|||||++++.
T Consensus       150 ~~----~~~~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          150 AA----KAQSKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             TT----SSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred             Cc----HHHHHHHHHHHHHhcCCCeEEEEe
Confidence            53    334667899999999999999884

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.79  E-value=9.4e-09  Score=103.97  Aligned_cols=93  Identities=18%  Similarity=0.225  Sum_probs=68.6

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-------------------CCcEEeccCCCCCC--CCCceeE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-------------------KPLVISGEGHRIPF--DGNTFDF  171 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-------------------~~l~~~~da~~LPf--~D~SFD~  171 (518)
                      .+++.+|||||||+|..+..+.+. +..+++++|+++.                   ...++.+|+.+.+.  ++++||+
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv  172 (304)
T 3bwc_A           93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV  172 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence            356789999999999999888765 3579999999731                   11245778777654  5899999


Q ss_pred             EEEcCceeeccCCh----HHHHHHHHhcccCCcEEEEEec
Q 010086          172 VFVGGARLEKASKP----LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       172 V~s~~~~l~~~~dp----~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      |++... .++.+..    ..+++++.|+|||||++++...
T Consensus       173 Ii~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  211 (304)
T 3bwc_A          173 VIIDTT-DPAGPASKLFGEAFYKDVLRILKPDGICCNQGE  211 (304)
T ss_dssp             EEEECC----------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEECCC-CccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            999663 3332222    5789999999999999999864

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.78  E-value=1.3e-08  Score=106.33  Aligned_cols=88  Identities=14%  Similarity=0.080  Sum_probs=68.9

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcC--ce
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGG--AR  178 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~--~~  178 (518)
                      +|..|||||||+|.++...++.|..+|+|||.++.               ...++.++.+++.+| +.||+|+|-.  ..
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~  161 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYG  161 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTT
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccccc
Confidence            67899999999999998888888789999998741               123568999999887 6799999843  11


Q ss_pred             eeccCChHHHHHHHHhcccCCcEEEE
Q 010086          179 LEKASKPLDFASEIVRTLKPEGFAVV  204 (518)
Q Consensus       179 l~~~~dp~~~l~Ei~RVLKPGG~lvi  204 (518)
                      +.+-.....++....|.|||||+++-
T Consensus       162 l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          162 LLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccchhhhHHHHHHhhCCCCceECC
Confidence            44434566788888999999998653

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.76  E-value=1e-08  Score=100.14  Aligned_cols=87  Identities=11%  Similarity=0.150  Sum_probs=66.4

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----------------CCcEEeccCCC-CCCC--CCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----------------KPLVISGEGHR-IPFD--GNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----------------~~l~~~~da~~-LPf~--D~SFD~V~  173 (518)
                      .++.+|||||||+|..+..+++. + ..+++|+|+++.                ...++.+|+.+ +|..  +++||+|+
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~  141 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF  141 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence            46789999999999999888874 2 379999999741                12346777765 4543  35999999


Q ss_pred             EcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +...    ..+...+++++.|+|||||++++.
T Consensus       142 ~d~~----~~~~~~~l~~~~~~LkpGG~lv~~  169 (248)
T 3tfw_A          142 IDAD----KPNNPHYLRWALRYSRPGTLIIGD  169 (248)
T ss_dssp             ECSC----GGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             ECCc----hHHHHHHHHHHHHhcCCCeEEEEe
Confidence            8653    234567899999999999999886

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.75  E-value=1.8e-08  Score=103.37  Aligned_cols=88  Identities=10%  Similarity=0.049  Sum_probs=71.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCC-------CC-CcEEeccCCCCCCCCCceeEEEEcCceeeccCC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKS-------SK-PLVISGEGHRIPFDGNTFDFVFVGGARLEKASK  184 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~-------~~-~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~d  184 (518)
                      ++++.+|||||||+|..+..+.+.. ..+++++|++.       .+ ..++.+|..+ |++  +||+|++..+ |||+++
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~v-lh~~~d  266 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFK-SIP--SADAVLLKWV-LHDWND  266 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTT-CCC--CCSEEEEESC-GGGSCH
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCC-CCC--CceEEEEccc-ccCCCH
Confidence            3466899999999999998887753 35899999741       01 2245778877 777  3999999998 999998


Q ss_pred             hH--HHHHHHHhcccC---CcEEEEE
Q 010086          185 PL--DFASEIVRTLKP---EGFAVVH  205 (518)
Q Consensus       185 p~--~~l~Ei~RVLKP---GG~lvi~  205 (518)
                      +.  ++++++.|+|||   ||++++.
T Consensus       267 ~~~~~~l~~~~~~L~p~~~gG~l~i~  292 (358)
T 1zg3_A          267 EQSLKILKNSKEAISHKGKDGKVIII  292 (358)
T ss_dssp             HHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            87  899999999999   9998875

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.73  E-value=3.7e-08  Score=92.08  Aligned_cols=85  Identities=11%  Similarity=0.021  Sum_probs=63.6

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------CCcEEeccCCCCCCCCCceeEEEEcCceeeccC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKAS  183 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~  183 (518)
                      ..++.+|||+|||+|..+..+++.|...++|+|+++.          ...++++|+.++|   ++||+|++... ++|..
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p-~~~~~  124 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPP-FGSVV  124 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCC-C----
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCC-chhcc
Confidence            3577899999999999998888777567999999741          2446788988876   79999999886 77775


Q ss_pred             C--hHHHHHHHHhcccCCcEEEE
Q 010086          184 K--PLDFASEIVRTLKPEGFAVV  204 (518)
Q Consensus       184 d--p~~~l~Ei~RVLKPGG~lvi  204 (518)
                      +  ..++++++.|+|  |+++++
T Consensus       125 ~~~~~~~l~~~~~~~--g~~~~~  145 (200)
T 1ne2_A          125 KHSDRAFIDKAFETS--MWIYSI  145 (200)
T ss_dssp             ---CHHHHHHHHHHE--EEEEEE
T ss_pred             CchhHHHHHHHHHhc--CcEEEE
Confidence            4  246899999999  554443

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.72  E-value=5.1e-09  Score=99.96  Aligned_cols=91  Identities=8%  Similarity=-0.050  Sum_probs=69.9

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-------------CC-cEEeccCCCCCCCCCceeEEEEcCce
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-------------KP-LVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-------------~~-l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      +.+.++|||+|||+|..+..+... +..+++|+|+++.             .. .+..+|... ..+.++||+|++... 
T Consensus        47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~-~~~~~~~DvVLa~k~-  124 (200)
T 3fzg_A           47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKES-DVYKGTYDVVFLLKM-  124 (200)
T ss_dssp             SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHH-HHTTSEEEEEEEETC-
T ss_pred             cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccc-cCCCCCcChhhHhhH-
Confidence            467889999999999999888654 2359999999841             11 233344433 256789999999998 


Q ss_pred             eeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          179 LEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +|++.+...++..+.+.|||||+++-.-
T Consensus       125 LHlL~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          125 LPVLKQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             HHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             HHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence            9999666677889999999999987653

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.72  E-value=1.1e-08  Score=98.23  Aligned_cols=87  Identities=15%  Similarity=0.227  Sum_probs=68.0

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------------CCcEEeccCCCC-CCC--CCceeEEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------------KPLVISGEGHRI-PFD--GNTFDFVFV  174 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------------~~l~~~~da~~L-Pf~--D~SFD~V~s  174 (518)
                      .++.+|||||||+|..+..+++. +..+++++|+++.                ...++.+|+.+. |..  +++||+|++
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  132 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI  132 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence            46789999999999999888775 2369999999741                123456777663 544  689999999


Q ss_pred             cCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          175 GGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ... .   .+...+++++.|+|||||++++.
T Consensus       133 ~~~-~---~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          133 DAA-K---GQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             EGG-G---SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCC-H---HHHHHHHHHHHHHcCCCeEEEEE
Confidence            764 3   35778999999999999999886

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.71  E-value=1.4e-08  Score=103.11  Aligned_cols=93  Identities=12%  Similarity=0.117  Sum_probs=68.9

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      ++++.+|||+|||+|..+..+++.  +...|+|+|+++.               ...++.+|+..++..+++||.|++..
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~  195 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA  195 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence            578899999999999999888764  2368999999841               12356788888876678999999831


Q ss_pred             -----ceeeccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 010086          177 -----ARLEKASK----------------PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       177 -----~~l~~~~d----------------p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                           ..+++.++                ..++++++.|+|||||++++.+
T Consensus       196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st  246 (315)
T 1ixk_A          196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  246 (315)
T ss_dssp             CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence                 11433221                1478899999999999998864

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.71  E-value=1.2e-08  Score=96.29  Aligned_cols=85  Identities=12%  Similarity=0.112  Sum_probs=65.9

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----------------CCcEEeccCCCC-CCCCCceeEEEEcC
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----------------KPLVISGEGHRI-PFDGNTFDFVFVGG  176 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----------------~~l~~~~da~~L-Pf~D~SFD~V~s~~  176 (518)
                      ++.+|||||||+|..+..+++. + ..+++++|+++.                ...++.+|+.+. |..++ ||+|++..
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~  134 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC  134 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence            5679999999999999888764 2 369999999741                122457777653 66667 99999864


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .    ..+...+++++.|+|||||++++.
T Consensus       135 ~----~~~~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          135 D----VFNGADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             T----TSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             C----hhhhHHHHHHHHHhcCCCeEEEEE
Confidence            2    245678999999999999999885

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.71  E-value=9.2e-09  Score=103.11  Aligned_cols=96  Identities=17%  Similarity=0.079  Sum_probs=67.3

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCc
Q 010086          105 FQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNT  168 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~S  168 (518)
                      .+.+++...+.++.+|||||||+|..+..|.+.+ .+|+|+|+++.                ...++.+|+.+++++  +
T Consensus        17 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~   93 (285)
T 1zq9_A           17 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--F   93 (285)
T ss_dssp             HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--C
T ss_pred             HHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--h
Confidence            3344444446788999999999999999998876 69999999741                123568999888876  7


Q ss_pred             eeEEEEcCc----------eeeccCChHHHH----HHHH--hcccCCcEEE
Q 010086          169 FDFVFVGGA----------RLEKASKPLDFA----SEIV--RTLKPEGFAV  203 (518)
Q Consensus       169 FD~V~s~~~----------~l~~~~dp~~~l----~Ei~--RVLKPGG~lv  203 (518)
                      ||.|+++..          .++|.+++..++    +|+.  |+|||||.++
T Consensus        94 fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           94 FDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             CSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             hcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            999999642          023333332111    5554  7999999863

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.69  E-value=3.1e-08  Score=98.41  Aligned_cols=89  Identities=16%  Similarity=0.144  Sum_probs=71.5

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      .++++.+|||+|||+|..+..+++.+ ..+|+|+|+++.               ...++.+|+.++|. +++||+|++..
T Consensus       116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~  194 (272)
T 3a27_A          116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGY  194 (272)
T ss_dssp             SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECC
T ss_pred             hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECC
Confidence            36788999999999999998888763 459999999741               12356889888755 78999999976


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      . .    +...++.++.|+|||||++++...
T Consensus       195 p-~----~~~~~l~~~~~~LkpgG~l~~s~~  220 (272)
T 3a27_A          195 V-H----KTHKFLDKTFEFLKDRGVIHYHET  220 (272)
T ss_dssp             C-S----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             c-c----cHHHHHHHHHHHcCCCCEEEEEEc
Confidence            4 2    567789999999999999988754

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.69  E-value=6e-08  Score=97.20  Aligned_cols=104  Identities=13%  Similarity=0.142  Sum_probs=73.0

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCce---eEEEEcC
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTF---DFVFVGG  176 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SF---D~V~s~~  176 (518)
                      ++.+|||+|||+|..+..+++.+..+|+|+|+|+.                ...++++|..+ +++ ++|   |+|+|+-
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~IvsnP  200 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMILSNP  200 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEEEECC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchh-hcc-cccCCCCEEEEcC
Confidence            56799999999999998887664469999999841                12356778765 333 589   9999962


Q ss_pred             cee----------ecc--------CChHHHHHHHH-hcccCCcEEEEEecCCCccCchhHhhhccCc
Q 010086          177 ARL----------EKA--------SKPLDFASEIV-RTLKPEGFAVVHVRAKDEYSFNSFLDLFNSC  224 (518)
Q Consensus       177 ~~l----------~~~--------~dp~~~l~Ei~-RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~  224 (518)
                      -+.          .|-        .++..+++++. +.|||||++++.++....   ..+..+|...
T Consensus       201 Pyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~---~~v~~~~~~~  264 (284)
T 1nv8_A          201 PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQV---EELKKIVSDT  264 (284)
T ss_dssp             CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCH---HHHTTTSTTC
T ss_pred             CCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHH---HHHHHHHHhC
Confidence            100          021        12337899999 999999999998764332   4566666655

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.68  E-value=1.2e-08  Score=99.77  Aligned_cols=86  Identities=16%  Similarity=0.204  Sum_probs=65.5

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCCC----------------CcEEeccCCCC-CCC-----CCceeE
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSSK----------------PLVISGEGHRI-PFD-----GNTFDF  171 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~~----------------~l~~~~da~~L-Pf~-----D~SFD~  171 (518)
                      ++.+|||||||+|..+..+++. + ..+|+++|+++..                ..++.+|+.+. |..     +++||+
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~  139 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF  139 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence            5679999999999999888873 2 3699999998631                12456777554 322     689999


Q ss_pred             EEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |++...    ..+...+++++.|+|||||++++.
T Consensus       140 V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          140 IFIDAD----KTNYLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             EEEESC----GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEcCC----hHHhHHHHHHHHHhcCCCeEEEEE
Confidence            998653    234567899999999999999985

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.68  E-value=7.5e-08  Score=96.29  Aligned_cols=125  Identities=12%  Similarity=0.045  Sum_probs=85.7

Q ss_pred             hhhhhhhccCCCcchhhccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCC
Q 010086           71 TANKAVRSNIVSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKS  149 (518)
Q Consensus        71 ~a~r~~~~~~~~~~~~~~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~  149 (518)
                      .|.++++.   +...-..|+|+.+.|-.        ++.+..+++++.+|||+|||+|..++..++ .+...++|+|+..
T Consensus        40 ~ar~~l~~---~~~~~~~YrSRaA~KL~--------ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv  108 (277)
T 3evf_A           40 TARRHLAE---GKVDTGVAVSRGTAKLR--------WFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR  108 (277)
T ss_dssp             HHHHHHHT---TCCSSCBCSSTHHHHHH--------HHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             HHHHHHhc---CCccCCCccccHHHHHH--------HHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEec
Confidence            35666663   33344568888777732        233446789999999999999999986654 3556778888762


Q ss_pred             C----CC---------cEEeccCCCCCCCCCceeEEEEcCceeeccCCh----H---HHHHHHHhcccCC-cEEEEEecC
Q 010086          150 S----KP---------LVISGEGHRIPFDGNTFDFVFVGGARLEKASKP----L---DFASEIVRTLKPE-GFAVVHVRA  208 (518)
Q Consensus       150 ~----~~---------l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp----~---~~l~Ei~RVLKPG-G~lvi~~~~  208 (518)
                      .    +.         ...+++.+..+++++.||+|+|..+ .+ .-.+    .   ..++.+.++|||| |.+++-+-+
T Consensus       109 Dl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~a-pn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          109 DGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIG-ES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             TTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC-CC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             cCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCc-cC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            1    11         1134555667888999999999774 44 2222    1   2468889999999 999997654

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.66  E-value=1.2e-08  Score=96.79  Aligned_cols=87  Identities=14%  Similarity=0.092  Sum_probs=65.2

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----------------CCcEEeccCCCC-CC-CC----Ccee
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----------------KPLVISGEGHRI-PF-DG----NTFD  170 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----------------~~l~~~~da~~L-Pf-~D----~SFD  170 (518)
                      .++.+|||||||+|..+..+++. + ..+++++|+++.                ...++.+|+.+. |. ++    ++||
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD  142 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence            36789999999999999888874 2 479999999741                123456776432 32 22    8999


Q ss_pred             EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +|++...    ..+...+++++.|+|||||++++.
T Consensus       143 ~v~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          143 LIYIDAD----KANTDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             EEEECSC----GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEECCC----HHHHHHHHHHHHHhcCCCcEEEEe
Confidence            9997553    234678899999999999999985

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.66  E-value=4.7e-08  Score=98.15  Aligned_cols=105  Identities=8%  Similarity=0.082  Sum_probs=71.5

Q ss_pred             hhHHHHHHHHHHcCCCCCCCeEEEEcCCC--CHhHHHH-Hh-cCCCcEEEEecCCC------------C---CcEEeccC
Q 010086           99 NFYSSVFQDLISEGYLSQSAKSLCVETQY--GQDVFAL-KE-IGVEDSIGIFKKSS------------K---PLVISGEG  159 (518)
Q Consensus        99 ~~~~~l~~~L~~~gll~~~~rvLDVGcGt--G~~~~~L-~~-~g~~~v~gID~s~~------------~---~l~~~~da  159 (518)
                      .|+....+.|..+.   ...++||||||+  +..+..+ .+ ....+|+++|.|+.            +   ..++++|.
T Consensus        64 ~fl~rav~~l~~~~---g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~  140 (277)
T 3giw_A           64 DWMNRAVAHLAKEA---GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADM  140 (277)
T ss_dssp             HHHHHHHHHHHHTS---CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCT
T ss_pred             HHHHHHHHHhcccc---CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecc
Confidence            45555555555321   126899999997  3333333 32 23469999999741            1   23568888


Q ss_pred             CCCC------CCCCcee-----EEEEcCceeeccCC---hHHHHHHHHhcccCCcEEEEEec
Q 010086          160 HRIP------FDGNTFD-----FVFVGGARLEKASK---PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       160 ~~LP------f~D~SFD-----~V~s~~~~l~~~~d---p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      .+++      ..+++||     .|+++.+ |||+++   |..+++++.++|+|||++++...
T Consensus       141 ~~~~~~l~~~~~~~~~D~~~p~av~~~av-LH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~  201 (277)
T 3giw_A          141 LDPASILDAPELRDTLDLTRPVALTVIAI-VHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIG  201 (277)
T ss_dssp             TCHHHHHTCHHHHTTCCTTSCCEEEEESC-GGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred             cChhhhhcccccccccCcCCcchHHhhhh-HhcCCchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence            7752      1246677     5777776 999987   56799999999999999999753

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.65  E-value=1.9e-08  Score=95.56  Aligned_cols=87  Identities=13%  Similarity=0.129  Sum_probs=64.6

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----------------CCcEEeccCCCC-C-CC---CCceeE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----------------KPLVISGEGHRI-P-FD---GNTFDF  171 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----------------~~l~~~~da~~L-P-f~---D~SFD~  171 (518)
                      .++.+|||||||+|..+..+++. + ..+++|+|+++.                ...++.+|+.+. | ++   +++||+
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~  136 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF  136 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence            46789999999999999888875 2 369999999741                123456776542 2 22   267999


Q ss_pred             EEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |++... .   .....+++++.|+|||||++++.
T Consensus       137 v~~d~~-~---~~~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A          137 IFIDAD-K---QNNPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             EEECSC-G---GGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             EEEcCC-c---HHHHHHHHHHHHhcCCCcEEEEe
Confidence            998763 2   23467899999999999988885

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.64  E-value=2.2e-08  Score=99.39  Aligned_cols=93  Identities=11%  Similarity=0.105  Sum_probs=69.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC---------------CCcEEeccCCCCCC----CCCceeEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS---------------KPLVISGEGHRIPF----DGNTFDFV  172 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~---------------~~l~~~~da~~LPf----~D~SFD~V  172 (518)
                      ++++.+|||+|||+|..+..+++.  +...|+|+|+++.               ...++.+|+.+++.    ++++||.|
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI  160 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence            568899999999999999888763  3469999999741               12345778877765    37899999


Q ss_pred             EEcCc-----eee------------ccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          173 FVGGA-----RLE------------KASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       173 ~s~~~-----~l~------------~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ++..-     .++            ......++++++.|+|||||++++.+
T Consensus       161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st  211 (274)
T 3ajd_A          161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST  211 (274)
T ss_dssp             EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            98621     022            11345788999999999999998875

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.63  E-value=1.7e-08  Score=103.67  Aligned_cols=94  Identities=12%  Similarity=0.100  Sum_probs=69.2

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C---CcEEeccCCCCCC----CCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K---PLVISGEGHRIPF----DGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~---~l~~~~da~~LPf----~D~SFD~V~  173 (518)
                      .++.+|||+|||+|..+..+++.|. +|+|+|+++.              .   ..++++|+.++..    .+++||+|+
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            4678999999999999988888775 9999999841              1   2356777765421    167999999


Q ss_pred             EcCc---------eeeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          174 VGGA---------RLEKASKPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       174 s~~~---------~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      +.--         .+++..+...+++++.|+|||||++++.....
T Consensus       231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence            8421         12333445688999999999999987775443

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.62  E-value=2.3e-09  Score=104.65  Aligned_cols=92  Identities=13%  Similarity=0.039  Sum_probs=67.9

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC-------------CcEEeccCCCCCCCC-CceeEEEEcCc-
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK-------------PLVISGEGHRIPFDG-NTFDFVFVGGA-  177 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~-------------~l~~~~da~~LPf~D-~SFD~V~s~~~-  177 (518)
                      .+.++.+|||||||+|..+..+++.+ .+++|+|+++..             ..++.+|+.++|+++ ++| .|+++.- 
T Consensus        26 ~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py  103 (245)
T 1yub_A           26 NLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGNIPY  103 (245)
T ss_dssp             CCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEECCS
T ss_pred             CCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEeCCc
Confidence            35678899999999999999888877 799999998521             124578999999984 789 5666421 


Q ss_pred             ---------eeeccCChHHHH----HHHHhcccCCcEEEEEe
Q 010086          178 ---------RLEKASKPLDFA----SEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       178 ---------~l~~~~dp~~~l----~Ei~RVLKPGG~lvi~~  206 (518)
                               .++|..++...+    +++.|+|||||.+++.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A          104 HLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             SSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             cccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence                     022333444455    77999999999877654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.61  E-value=5.9e-07  Score=92.43  Aligned_cols=96  Identities=14%  Similarity=-0.002  Sum_probs=71.8

Q ss_pred             HHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCC--------------CCCcEEeccCCCCCCCCCceeE
Q 010086          107 DLISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKS--------------SKPLVISGEGHRIPFDGNTFDF  171 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~--------------~~~l~~~~da~~LPf~D~SFD~  171 (518)
                      .+.+.--++...+|||||||+|..+..+.+. +..+++..|+..              ....++.+|..+.|+++  +|+
T Consensus       170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~--~D~  247 (353)
T 4a6d_A          170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPE--ADL  247 (353)
T ss_dssp             HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCC--CSE
T ss_pred             HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCC--ceE
Confidence            3444334566789999999999999888764 334677788521              01234578877667664  699


Q ss_pred             EEEcCceeeccCChH--HHHHHHHhcccCCcEEEEE
Q 010086          172 VFVGGARLEKASKPL--DFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       172 V~s~~~~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |++..+ ||+++|+.  +.++++.|+|||||.++|.
T Consensus       248 ~~~~~v-lh~~~d~~~~~iL~~~~~al~pgg~lli~  282 (353)
T 4a6d_A          248 YILARV-LHDWADGKCSHLLERIYHTCKPGGGILVI  282 (353)
T ss_dssp             EEEESS-GGGSCHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             EEeeee-cccCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            999998 99998874  6799999999999998876

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.60  E-value=4.7e-08  Score=99.33  Aligned_cols=91  Identities=13%  Similarity=0.252  Sum_probs=68.8

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC------------------CC--cEEeccCCC-CCCCCCceeEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS------------------KP--LVISGEGHR-IPFDGNTFDFV  172 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~------------------~~--l~~~~da~~-LPf~D~SFD~V  172 (518)
                      +.+.+|||||||+|..+..+.+. +..+++++|+++.                  .+  .++.+|+.+ ++..+++||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            45689999999999999888765 4579999999731                  11  245677765 45568899999


Q ss_pred             EEcCceeecc--CC------hHHHHHHHHhcccCCcEEEEEec
Q 010086          173 FVGGARLEKA--SK------PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       173 ~s~~~~l~~~--~d------p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++...  .+.  ..      ...+++++.|+|||||++++...
T Consensus       156 i~d~~--~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  196 (314)
T 1uir_A          156 IIDLT--DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (314)
T ss_dssp             EEECC--CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EECCC--CcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence            99763  333  12      25789999999999999998753

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.58  E-value=7.6e-08  Score=98.44  Aligned_cols=88  Identities=10%  Similarity=0.079  Sum_probs=66.7

Q ss_pred             CeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC--------------C-CcEEeccCCCC--CCCCCceeEEEEcCcee
Q 010086          118 AKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS--------------K-PLVISGEGHRI--PFDGNTFDFVFVGGARL  179 (518)
Q Consensus       118 ~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~--------------~-~l~~~~da~~L--Pf~D~SFD~V~s~~~~l  179 (518)
                      .+|||||||+|..+..+.+ .+..++++||+++.              + ..++.+|+.+.  .+++++||+|++..  +
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~--~  168 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDV--F  168 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECC--S
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECC--C
Confidence            3999999999999988877 43358999999741              1 12467887654  46789999999964  3


Q ss_pred             eccCC-----hHHHHHHHHhcccCCcEEEEEec
Q 010086          180 EKASK-----PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       180 ~~~~d-----p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      .+...     ...+++++.|+|||||++++...
T Consensus       169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            33221     25789999999999999999865

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.58  E-value=6.5e-08  Score=96.47  Aligned_cols=91  Identities=20%  Similarity=0.261  Sum_probs=68.7

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-----------------CC--cEEeccCCC-CCCCCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-----------------KP--LVISGEGHR-IPFDGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-----------------~~--l~~~~da~~-LPf~D~SFD~V~  173 (518)
                      ..+.+|||||||+|..+..+.+. +..+++++|+++.                 .+  .++.+|+.+ ++..+++||+|+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            35689999999999999888765 5679999998731                 11  245777765 455678999999


Q ss_pred             EcCceeeccCC-----hHHHHHHHHhcccCCcEEEEEec
Q 010086          174 VGGARLEKASK-----PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       174 s~~~~l~~~~d-----p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +..  ..+...     ...+++++.|+|||||++++...
T Consensus       154 ~d~--~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~  190 (275)
T 1iy9_A          154 VDS--TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD  190 (275)
T ss_dssp             ESC--SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             ECC--CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            965  333211     25789999999999999999864

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.58  E-value=4.5e-08  Score=95.10  Aligned_cols=88  Identities=9%  Similarity=-0.021  Sum_probs=58.2

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC--------------C--CcEEeccCCCC---CCC---CCceeEE
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS--------------K--PLVISGEGHRI---PFD---GNTFDFV  172 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~--------------~--~l~~~~da~~L---Pf~---D~SFD~V  172 (518)
                      ++.+|||+|||+|..+..+++. +..+++|+|+++.              .  ..++++|+.+.   +++   +++||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            5779999999999988777653 2369999999741              1  23567887662   566   4799999


Q ss_pred             EEcCceeeccC--------------Ch-HHHHHHHHhcccCCcEEEE
Q 010086          173 FVGGARLEKAS--------------KP-LDFASEIVRTLKPEGFAVV  204 (518)
Q Consensus       173 ~s~~~~l~~~~--------------dp-~~~l~Ei~RVLKPGG~lvi  204 (518)
                      ++..- +++..              .| ..++.+++|+|||||.+.+
T Consensus       145 ~~npp-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~  190 (254)
T 2h00_A          145 MCNPP-FFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF  190 (254)
T ss_dssp             EECCC-CC-------------------------CTTTTHHHHTHHHH
T ss_pred             EECCC-CccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence            99853 32221              11 2356889999999997654

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.58  E-value=3.9e-08  Score=94.88  Aligned_cols=88  Identities=15%  Similarity=0.200  Sum_probs=65.7

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC------------C----CcEEeccCCC-C-------------
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS------------K----PLVISGEGHR-I-------------  162 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~------------~----~l~~~~da~~-L-------------  162 (518)
                      .++.+|||||||+|..+..+++. + ..+++++|+++.            .    ..++.+|+.+ +             
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  138 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA  138 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence            46789999999999999888775 2 369999998741            0    1234555433 2             


Q ss_pred             -CCCC--CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          163 -PFDG--NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       163 -Pf~D--~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                       .|++  ++||+|++... .+   +...+++++.++|||||++++..
T Consensus       139 ~~f~~~~~~fD~I~~~~~-~~---~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          139 SDFAFGPSSIDLFFLDAD-KE---NYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             TTTCCSTTCEEEEEECSC-GG---GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccccCCCCCcCEEEEeCC-HH---HHHHHHHHHHHHcCCCeEEEEEc
Confidence             2555  89999999764 33   34578999999999999999863

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.57  E-value=3.5e-08  Score=96.70  Aligned_cols=87  Identities=11%  Similarity=0.172  Sum_probs=66.0

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC-----------C-----CcEEeccCCCC-CC------CCCce
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS-----------K-----PLVISGEGHRI-PF------DGNTF  169 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~-----------~-----~l~~~~da~~L-Pf------~D~SF  169 (518)
                      .++.+|||||||+|..+..+++. + ..+++++|+++.           .     ..++.+|+.+. |.      ++++|
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            35679999999999999888764 2 369999999852           0     12456777543 42      26899


Q ss_pred             eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          170 DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |+|++...    ..+...+++++.|+|||||++++.
T Consensus       158 D~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          158 DFIFVDAD----KDNYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             SEEEECSC----STTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             EEEEEcCc----hHHHHHHHHHHHHhCCCCeEEEEe
Confidence            99998653    235678899999999999999885

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.57  E-value=9.9e-08  Score=101.59  Aligned_cols=93  Identities=12%  Similarity=0.125  Sum_probs=70.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC---------------CCcEEeccCCCCC--CCCCceeEEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS---------------KPLVISGEGHRIP--FDGNTFDFVFV  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~---------------~~l~~~~da~~LP--f~D~SFD~V~s  174 (518)
                      ++++.+|||+|||+|..+..+++. + ...++|+|+++.               ...++.+|+..++  |++++||.|++
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~  336 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL  336 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence            578899999999999999888763 3 268999999841               1234578888887  77789999996


Q ss_pred             c-----CceeeccCCh----------------HHHHHHHHhcccCCcEEEEEe
Q 010086          175 G-----GARLEKASKP----------------LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       175 ~-----~~~l~~~~dp----------------~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .     ...+++.++.                ...++++.++|||||++++.+
T Consensus       337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~t  389 (450)
T 2yxl_A          337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTT  389 (450)
T ss_dssp             ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            2     1124443332                467999999999999998764

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.57  E-value=1.3e-07  Score=99.88  Aligned_cols=93  Identities=15%  Similarity=0.182  Sum_probs=71.0

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC--------------CCcEEeccCCCCC--CCCCceeEEEEc-
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS--------------KPLVISGEGHRIP--FDGNTFDFVFVG-  175 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~--------------~~l~~~~da~~LP--f~D~SFD~V~s~-  175 (518)
                      .+++.+|||+|||+|..+..+++.+ ...++|+|+++.              ...++.+|+..++  +++++||.|++. 
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~  323 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA  323 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence            5788999999999999998887754 269999999863              1235678888886  778899999962 


Q ss_pred             ---C-ceeeccCCh----------------HHHHHHHHhcccCCcEEEEEe
Q 010086          176 ---G-ARLEKASKP----------------LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       176 ---~-~~l~~~~dp----------------~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                         . ..+++.++.                ...++++.+.|||||++++.+
T Consensus       324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst  374 (429)
T 1sqg_A          324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  374 (429)
T ss_dssp             CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence               2 124443332                367899999999999998865

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.57  E-value=1.3e-07  Score=97.24  Aligned_cols=91  Identities=16%  Similarity=0.232  Sum_probs=67.5

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-------------------CCcEEeccCCCC--CCCCCceeE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-------------------KPLVISGEGHRI--PFDGNTFDF  171 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-------------------~~l~~~~da~~L--Pf~D~SFD~  171 (518)
                      .+.+.+|||||||+|..+..+.+. +..+|+++|+++.                   ...++.+|+.+.  .+++++||+
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence            355689999999999999888765 3579999999731                   112457776653  346789999


Q ss_pred             EEEcCceeeccC--C---hHHHHHHHHhcccCCcEEEEEe
Q 010086          172 VFVGGARLEKAS--K---PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       172 V~s~~~~l~~~~--d---p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      |++..  .+...  +   ...+++++.|+|||||++++..
T Consensus       198 Ii~d~--~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          198 VIVDS--SDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EEECC--CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEECC--CCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            99964  22111  1   2578999999999999999974

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.56  E-value=7.6e-08  Score=97.00  Aligned_cols=91  Identities=16%  Similarity=0.188  Sum_probs=66.7

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-----------------C--CcEEeccCCC-CCCCCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-----------------K--PLVISGEGHR-IPFDGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-----------------~--~l~~~~da~~-LPf~D~SFD~V~  173 (518)
                      ..+.+|||||||+|..+..+.+. +..+++++|+++.                 .  ..++.+|+.+ ++..+++||+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            35689999999999999888775 5579999999731                 1  1245677655 455678999999


Q ss_pred             EcCceeec-cC-----ChHHHHHHHHhcccCCcEEEEEec
Q 010086          174 VGGARLEK-AS-----KPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       174 s~~~~l~~-~~-----dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +..  .++ ..     ....+++++.|+|||||++++...
T Consensus       169 ~d~--~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  206 (296)
T 1inl_A          169 IDS--TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  206 (296)
T ss_dssp             EEC------------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EcC--CCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence            854  332 21     125789999999999999999854

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.56  E-value=9.6e-08  Score=97.52  Aligned_cols=91  Identities=21%  Similarity=0.254  Sum_probs=67.4

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------C----------CcEEeccCCC-CCCCCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------K----------PLVISGEGHR-IPFDGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------~----------~l~~~~da~~-LPf~D~SFD~V~  173 (518)
                      .++.+|||||||+|..+..+.+. +..+++++|+++.         +          ..++.+|+.+ ++..+++||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            45689999999999999888765 4579999999731         1          1245677654 344578999999


Q ss_pred             EcCceeeccC---C--hHHHHHHHHhcccCCcEEEEEec
Q 010086          174 VGGARLEKAS---K--PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       174 s~~~~l~~~~---d--p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +..  .++..   .  ...+++++.|+|||||++++...
T Consensus       195 ~d~--~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  231 (321)
T 2pt6_A          195 VDS--SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  231 (321)
T ss_dssp             EEC--CCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ECC--cCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            865  23221   1  15789999999999999999864

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.55  E-value=2.4e-07  Score=92.00  Aligned_cols=84  Identities=11%  Similarity=-0.016  Sum_probs=65.7

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC--------C-C----------CcEEeccCCCCCCCCCceeEEEEc
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS--------S-K----------PLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~--------~-~----------~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      ..+.+|||||||+|..+..+.+.+ .+++++|+++        . +          ..++.+|+.+.+   ++||+|++.
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d  146 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL  146 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence            355799999999999998776667 8999999873        1 1          123467776654   889999986


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      .      .+|..+++++.|+|||||++++....
T Consensus       147 ~------~dp~~~~~~~~~~L~pgG~lv~~~~~  173 (262)
T 2cmg_A          147 Q------EPDIHRIDGLKRMLKEDGVFISVAKH  173 (262)
T ss_dssp             S------CCCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             C------CChHHHHHHHHHhcCCCcEEEEEcCC
Confidence            3      36777999999999999999997543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.54  E-value=1.3e-07  Score=95.89  Aligned_cols=90  Identities=13%  Similarity=0.183  Sum_probs=66.4

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-----------------C--CcEEeccCCC-CCCCCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-----------------K--PLVISGEGHR-IPFDGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-----------------~--~l~~~~da~~-LPf~D~SFD~V~  173 (518)
                      ..+.+|||||||+|..+..+.+. +..+++++|+++.                 .  ..++.+|+.+ ++..+++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            45689999999999999888775 3579999998731                 1  1245677765 456688999999


Q ss_pred             EcCceeeccC-----ChHHHHHHHHhcccCCcEEEEEe
Q 010086          174 VGGARLEKAS-----KPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       174 s~~~~l~~~~-----dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +...  .+..     ....+++++.|+|||||++++..
T Consensus       174 ~d~~--~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          174 TDSS--DPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EECC-------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCC--CCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            9653  3221     12468999999999999999875

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.54  E-value=1.5e-07  Score=97.71  Aligned_cols=91  Identities=11%  Similarity=0.032  Sum_probs=69.6

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCC-CcEEEEecCCC---------------CCcEEeccCCC-CCC-CCCceeEEEEcC
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGV-EDSIGIFKKSS---------------KPLVISGEGHR-IPF-DGNTFDFVFVGG  176 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~-~~v~gID~s~~---------------~~l~~~~da~~-LPf-~D~SFD~V~s~~  176 (518)
                      .++.+|||+| |+|..+..++..+. .+|+|+|+++.               ...++.+|+.+ +|. .+++||+|++..
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~  249 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP  249 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence            3678999999 99999988887764 69999999741               12356889988 775 578999999976


Q ss_pred             ceeeccCChHHHHHHHHhcccCCc-EEEEEecC
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEG-FAVVHVRA  208 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG-~lvi~~~~  208 (518)
                      . ++.. ....+++++.|+||||| ++++.+..
T Consensus       250 p-~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          250 P-ETLE-AIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             C-SSHH-HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             C-CchH-HHHHHHHHHHHHcccCCeEEEEEEec
Confidence            4 4332 24678999999999999 44665543

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.52  E-value=8.6e-08  Score=92.53  Aligned_cols=86  Identities=14%  Similarity=0.155  Sum_probs=64.9

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----------------CCcEEeccCC----CCCCCC--CceeE
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----------------KPLVISGEGH----RIPFDG--NTFDF  171 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----------------~~l~~~~da~----~LPf~D--~SFD~  171 (518)
                      ++.+|||||||+|..+..+++. + ..+++++|+++.                ...++.+++.    .+|+++  ++||+
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~  151 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL  151 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence            5679999999999999888764 2 358999999741                1123466653    345555  89999


Q ss_pred             EEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |++... .   .+...+++++.|+|||||++++.
T Consensus       152 V~~d~~-~---~~~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          152 IFIDAD-K---RNYPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             EEECSC-G---GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEECCC-H---HHHHHHHHHHHHHcCCCeEEEEe
Confidence            998653 2   34567899999999999999986

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.52  E-value=8.5e-08  Score=95.77  Aligned_cols=90  Identities=16%  Similarity=0.240  Sum_probs=65.8

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------------------CC--cEEeccCCC-CCCCCCc
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------------------KP--LVISGEGHR-IPFDGNT  168 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------------------~~--l~~~~da~~-LPf~D~S  168 (518)
                      ..+.+|||||||+|..+..+.+.+..+++++|+++.                       .+  .++.+|+.+ ++. +++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence            456899999999999998887666679999998731                       11  234566544 233 689


Q ss_pred             eeEEEEcCceeeccCC-----hHHHHHHHHhcccCCcEEEEEec
Q 010086          169 FDFVFVGGARLEKASK-----PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       169 FD~V~s~~~~l~~~~d-----p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ||+|++..  .++...     ...+++++.|+|||||++++...
T Consensus       153 fD~Ii~d~--~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  194 (281)
T 1mjf_A          153 FDVIIADS--TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  194 (281)
T ss_dssp             EEEEEEEC--CCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeEEEECC--CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            99999865  332211     25689999999999999999754

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.49  E-value=8.8e-08  Score=97.63  Aligned_cols=91  Identities=14%  Similarity=0.187  Sum_probs=64.8

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------C--------C--cEEeccCCC-CCCCCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------K--------P--LVISGEGHR-IPFDGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------~--------~--l~~~~da~~-LPf~D~SFD~V~  173 (518)
                      ..+.+|||||||+|..+..+.+. +..+++++|+++.         +        +  .++.+|+.+ ++..+++||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            45679999999999999888765 3579999999731         1        1  235667654 445678999999


Q ss_pred             EcCceeeccCCh-----HHHHHHHHhcccCCcEEEEEec
Q 010086          174 VGGARLEKASKP-----LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       174 s~~~~l~~~~dp-----~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +..  .++...+     ..+++++.|+|||||++++..+
T Consensus       187 ~d~--~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~  223 (314)
T 2b2c_A          187 TDS--SDPVGPAESLFGQSYYELLRDALKEDGILSSQGE  223 (314)
T ss_dssp             ECC--C-------------HHHHHHHHEEEEEEEEEECC
T ss_pred             EcC--CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence            965  3433211     5789999999999999999763

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.48  E-value=2.3e-07  Score=92.84  Aligned_cols=91  Identities=21%  Similarity=0.261  Sum_probs=67.1

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------C--------C--cEEeccCCC-CCCCCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------K--------P--LVISGEGHR-IPFDGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------~--------~--l~~~~da~~-LPf~D~SFD~V~  173 (518)
                      +++.+|||||||+|..+..+.+. +..+++++|+++.         +        +  .++.+|+.+ ++..+++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            45689999999999999888765 3579999999731         1        1  245677655 333478999999


Q ss_pred             EcCceeeccCCh-----HHHHHHHHhcccCCcEEEEEec
Q 010086          174 VGGARLEKASKP-----LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       174 s~~~~l~~~~dp-----~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +..  .++...+     ..+++++.|+|||||++++...
T Consensus       157 ~d~--~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          157 VDS--SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             EEC--CCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EcC--CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            954  2322111     4789999999999999999854

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.48  E-value=2.1e-06  Score=89.20  Aligned_cols=133  Identities=17%  Similarity=0.131  Sum_probs=81.9

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCCC------CcEEeccCCCCCCCCCceeEEEEcCce--eec---
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSSK------PLVISGEGHRIPFDGNTFDFVFVGGAR--LEK---  181 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~~------~l~~~~da~~LPf~D~SFD~V~s~~~~--l~~---  181 (518)
                      .++.+|||+|||+|.++..+.+.  +..+++|+|+++..      ..++++|....+ +++.||+|+++--+  ..+   
T Consensus        38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~~~  116 (421)
T 2ih2_A           38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWE-PGEAFDLILGNPPYGIVGEASK  116 (421)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCC-CSSCEEEEEECCCCCCBSCTTT
T ss_pred             CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcC-ccCCCCEEEECcCccCcccccc
Confidence            45679999999999999877763  34699999998642      224577877654 35789999995210  111   


Q ss_pred             ----cCCh-------------------HHHHHHHHhcccCCcEEEEEecCCCc--cCchhHhhhcc-C--ccEEEEeccC
Q 010086          182 ----ASKP-------------------LDFASEIVRTLKPEGFAVVHVRAKDE--YSFNSFLDLFN-S--CKLVKSRDID  233 (518)
Q Consensus       182 ----~~dp-------------------~~~l~Ei~RVLKPGG~lvi~~~~~~~--~s~~~~~~lf~-~--~~~v~~~~v~  233 (518)
                          +.+.                   ..+++.+.+.|||||.+++.+...-.  -+...+.+++. .  ..++.+.  .
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~~~i~~l~--~  194 (421)
T 2ih2_A          117 YPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYLG--E  194 (421)
T ss_dssp             CSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEEEEEEE--S
T ss_pred             cccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCCeEEEECC--C
Confidence                1111                   14688999999999999887754211  11233443322 1  2445544  3


Q ss_pred             CCCCCccceeEEEEeec
Q 010086          234 GIDSSLPYIREIVLKKE  250 (518)
Q Consensus       234 ~~~~~~p~~~~vv~kK~  250 (518)
                      .|...-.....++++|.
T Consensus       195 ~F~~~~~~~~il~~~k~  211 (421)
T 2ih2_A          195 VFPQKKVSAVVIRFQKS  211 (421)
T ss_dssp             CSTTCCCCEEEEEEESS
T ss_pred             CCCCCCccEEEEEEEeC
Confidence            35433223344666764

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.46  E-value=5.1e-07  Score=88.35  Aligned_cols=131  Identities=16%  Similarity=0.143  Sum_probs=86.9

Q ss_pred             CCCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEE
Q 010086          112 GYLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFV  174 (518)
Q Consensus       112 gll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s  174 (518)
                      .+++++.+|||||||+|..+..+++.| ...|+|+|+++.                ...+..+|..+.+.+++.||+|+.
T Consensus        17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivi   96 (230)
T 3lec_A           17 NYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITI   96 (230)
T ss_dssp             TTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             HhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEE
Confidence            357889999999999999999988876 458999999841                123567888877766668999887


Q ss_pred             cCceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCCCccceeEEEEeec
Q 010086          175 GGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKE  250 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~~p~~~~vv~kK~  250 (518)
                      .+. --.  --...+.+..+.|+++|.++++.... ..++..++. -.+|.++...-+.. +.+  +|..++.++.
T Consensus        97 aGm-Gg~--lI~~IL~~~~~~l~~~~~lIlqp~~~-~~~lr~~L~-~~Gf~i~~E~lv~e-~~~--~Yeii~~~~~  164 (230)
T 3lec_A           97 CGM-GGR--LIADILNNDIDKLQHVKTLVLQPNNR-EDDLRKWLA-ANDFEIVAEDILTE-NDK--RYEILVVKHG  164 (230)
T ss_dssp             EEE-CHH--HHHHHHHHTGGGGTTCCEEEEEESSC-HHHHHHHHH-HTTEEEEEEEEEEC---C--EEEEEEEEEC
T ss_pred             eCC-chH--HHHHHHHHHHHHhCcCCEEEEECCCC-hHHHHHHHH-HCCCEEEEEEEEEE-CCE--EEEEEEEEeC
Confidence            653 111  13456888899999999999986432 222222222 14677777553221 112  4555666553

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.46  E-value=1.2e-07  Score=90.17  Aligned_cols=87  Identities=18%  Similarity=0.134  Sum_probs=64.3

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----------------CCcEEeccCCCC--CCCC----Ccee
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----------------KPLVISGEGHRI--PFDG----NTFD  170 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----------------~~l~~~~da~~L--Pf~D----~SFD  170 (518)
                      .++.+|||||||+|..+..+++. + ..+++++|+++.                ...++.+|+.+.  .+++    ++||
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D  147 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  147 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence            46789999999999999888864 2 369999999751                112456665432  1222    7899


Q ss_pred             EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +|++...    ..+...+++++.|.|||||++++.
T Consensus       148 ~v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          148 VAVVDAD----KENCSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             EEEECSC----STTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEECCC----HHHHHHHHHHHHHHcCCCeEEEEE
Confidence            9999653    234567899999999999999885

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.45  E-value=1.6e-07  Score=101.03  Aligned_cols=91  Identities=13%  Similarity=0.160  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC---------------CCcEEeccCCCCCC-CCCceeEEEEc--
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS---------------KPLVISGEGHRIPF-DGNTFDFVFVG--  175 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~---------------~~l~~~~da~~LPf-~D~SFD~V~s~--  175 (518)
                      ++.+|||+|||+|..+..+++. + ...|+|+|+++.               ...++.+|+..++. .+++||.|++.  
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P  196 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP  196 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence            8899999999999999888764 2 368999999841               12345788888765 67899999972  


Q ss_pred             --C-ceeeccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 010086          176 --G-ARLEKASK----------------PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       176 --~-~~l~~~~d----------------p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                        + ..+.+-++                ..+.+.++.|+|||||++++.+
T Consensus       197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT  246 (479)
T 2frx_A          197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST  246 (479)
T ss_dssp             CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence              1 11333222                1357899999999999998864

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.44  E-value=4e-07  Score=94.54  Aligned_cols=97  Identities=19%  Similarity=0.159  Sum_probs=70.3

Q ss_pred             HHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCC-CcEEEEecCCC----------------CCcEEeccCCCCCCCCCce
Q 010086          107 DLISEGYLSQSAKSLCVETQYGQDVFALKEIGV-EDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTF  169 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~-~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SF  169 (518)
                      .++... .+++.+|||+|||+|..+..++..+. .+++|+|+++.                ...+.++|+.++|+++++|
T Consensus       209 ~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~f  287 (373)
T 3tm4_A          209 AMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSV  287 (373)
T ss_dssp             HHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCE
T ss_pred             HHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCc
Confidence            333333 67889999999999999988887763 48999999841                2346789999999999999


Q ss_pred             eEEEEcCceeec-------cCCh-HHHHHHHHhcccCCcEEEEEec
Q 010086          170 DFVFVGGARLEK-------ASKP-LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       170 D~V~s~~~~l~~-------~~dp-~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      |+|+++-- +..       +.+. ..+++++.|+|  ||.+++.+.
T Consensus       288 D~Ii~npP-yg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~  330 (373)
T 3tm4_A          288 DFAISNLP-YGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT  330 (373)
T ss_dssp             EEEEEECC-CC------CCHHHHHHHHHHHHHHHE--EEEEEEEES
T ss_pred             CEEEECCC-CCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence            99999643 221       1111 46789999999  555555443

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.42  E-value=1.7e-07  Score=91.64  Aligned_cols=98  Identities=9%  Similarity=0.055  Sum_probs=64.4

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCC-Ccee
Q 010086          105 FQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDG-NTFD  170 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D-~SFD  170 (518)
                      .+.+++...+.++.+|||||||+|..+..|.+.+ .+|+|+|+++.             ...++.+|+.++|+++ ..|+
T Consensus        19 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~~   97 (244)
T 1qam_A           19 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYK   97 (244)
T ss_dssp             HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCE
T ss_pred             HHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCeE
Confidence            3344444445678999999999999999998877 79999999741             1235789999999985 5665


Q ss_pred             EEEEcCc----------eeeccCChHHHH---HH-HHhcccCCcEEEE
Q 010086          171 FVFVGGA----------RLEKASKPLDFA---SE-IVRTLKPEGFAVV  204 (518)
Q Consensus       171 ~V~s~~~----------~l~~~~dp~~~l---~E-i~RVLKPGG~lvi  204 (518)
                       |+++.-          .++|...+..++   .| +.|+|+|||.+.+
T Consensus        98 -vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~v  144 (244)
T 1qam_A           98 -IFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLAL  144 (244)
T ss_dssp             -EEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHHH
T ss_pred             -EEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchhH
Confidence             444321          012222232333   34 7788888765433

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.42  E-value=1.8e-06  Score=80.72  Aligned_cols=87  Identities=13%  Similarity=0.106  Sum_probs=66.3

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      ..++.+|||+|||+|..+..+++.|...++|+|+++.              ...++.+|+.++|   ++||+|++... +
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p-~  122 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPP-F  122 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCC-C
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCC-C
Confidence            4567899999999999999888877668999999741              1235678888865   48999999875 5


Q ss_pred             eccCC--hHHHHHHHHhcccCCcEEEEEe
Q 010086          180 EKASK--PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       180 ~~~~d--p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ++...  ...+++++.|+|  ||++++.+
T Consensus       123 ~~~~~~~~~~~l~~~~~~l--~~~~~~~~  149 (207)
T 1wy7_A          123 GSQRKHADRPFLLKAFEIS--DVVYSIHL  149 (207)
T ss_dssp             SSSSTTTTHHHHHHHHHHC--SEEEEEEE
T ss_pred             ccccCCchHHHHHHHHHhc--CcEEEEEe
Confidence            55432  246889999999  66665553

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.42  E-value=1.2e-07  Score=101.78  Aligned_cols=93  Identities=16%  Similarity=0.147  Sum_probs=68.5

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC--------------CCcEEeccCCCCC-CCCCceeEEEE--
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS--------------KPLVISGEGHRIP-FDGNTFDFVFV--  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~--------------~~l~~~~da~~LP-f~D~SFD~V~s--  174 (518)
                      ++++.+|||+|||+|..+..+++. + ...|+|+|+++.              ...++.+|+.+++ +.+++||.|++  
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~  178 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA  178 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECC
Confidence            568999999999999999888763 2 358999999841              1335678887776 45789999995  


Q ss_pred             --cC-ceeeccCCh----------------HHHHHHHHhcccCCcEEEEEe
Q 010086          175 --GG-ARLEKASKP----------------LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       175 --~~-~~l~~~~dp----------------~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                        +. ..+++-++.                .+.++++.|+|||||+++..+
T Consensus       179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT  229 (464)
T 3m6w_A          179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST  229 (464)
T ss_dssp             CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence              21 113322221                568899999999999998864

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.41  E-value=2.2e-07  Score=96.96  Aligned_cols=94  Identities=9%  Similarity=0.085  Sum_probs=67.7

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------------CCcEEeccCCC-CCC---CCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------------KPLVISGEGHR-IPF---DGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------------~~l~~~~da~~-LPf---~D~SFD~V~  173 (518)
                      .++.+|||+|||+|..+..+++.|...|+|+|+++.                 ...++++|+.+ ++.   .+++||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            578899999999999998888777669999999852                 12356777755 332   256899999


Q ss_pred             EcCcee----eccCCh----HHHHHHHHhcccCCcEEEEEecC
Q 010086          174 VGGARL----EKASKP----LDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       174 s~~~~l----~~~~dp----~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +.--.+    .+..+.    .+++.++.++|||||++++....
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~  333 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  333 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            853212    233333    34567889999999999987643

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.40  E-value=8.8e-07  Score=92.50  Aligned_cols=90  Identities=16%  Similarity=0.123  Sum_probs=63.3

Q ss_pred             CCeEEEEcCCCCHhHHHH--------Hh----cC----CCcEEEEecCCC---------------------------CCc
Q 010086          117 SAKSLCVETQYGQDVFAL--------KE----IG----VEDSIGIFKKSS---------------------------KPL  153 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L--------~~----~g----~~~v~gID~s~~---------------------------~~l  153 (518)
                      ..+|+|+|||+|..+..+        ++    .|    ...|..-|+-..                           ++.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            478999999999887554        11    11    235666665311                           112


Q ss_pred             EE---eccCCCCCCCCCceeEEEEcCceeeccCChH--------------------------------------HHHHHH
Q 010086          154 VI---SGEGHRIPFDGNTFDFVFVGGARLEKASKPL--------------------------------------DFASEI  192 (518)
Q Consensus       154 ~~---~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~--------------------------------------~~l~Ei  192 (518)
                      ++   -+......||++|||+|+|+.+ |||+++..                                      .+++..
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~a-LHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r  211 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFS-LHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR  211 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESC-TTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecce-eeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            22   2344556899999999999998 99987422                                      257788


Q ss_pred             HhcccCCcEEEEEec
Q 010086          193 VRTLKPEGFAVVHVR  207 (518)
Q Consensus       193 ~RVLKPGG~lvi~~~  207 (518)
                      +|.|||||++++.+.
T Consensus       212 a~eL~pGG~mvl~~~  226 (374)
T 3b5i_A          212 AAEVKRGGAMFLVCL  226 (374)
T ss_dssp             HHHEEEEEEEEEEEE
T ss_pred             HHHhCCCCEEEEEEe
Confidence            999999999999864

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.39  E-value=3e-07  Score=89.15  Aligned_cols=87  Identities=14%  Similarity=0.165  Sum_probs=64.9

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----------------CCcEEeccCCCC-C-C-----CCCce
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----------------KPLVISGEGHRI-P-F-----DGNTF  169 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----------------~~l~~~~da~~L-P-f-----~D~SF  169 (518)
                      .++.+|||||||+|..+..+++. + ..+++++|+++.                ...++.+|+.+. | +     ++++|
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            35679999999999999888764 2 379999999741                112456776543 3 2     36899


Q ss_pred             eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          170 DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |+|++... -   .+...+++++.|.|||||++++.
T Consensus       149 D~I~~d~~-~---~~~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          149 DFGFVDAD-K---PNYIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             EEEEECSC-G---GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CEEEECCc-h---HHHHHHHHHHHHhcCCCeEEEEe
Confidence            99998653 1   24567899999999999999886

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.39  E-value=3.8e-07  Score=95.76  Aligned_cols=93  Identities=19%  Similarity=0.200  Sum_probs=66.4

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCC-CCCCCceeEEEEcCc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRI-PFDGNTFDFVFVGGA  177 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~L-Pf~D~SFD~V~s~~~  177 (518)
                      ++++|.+|||+|||||..+..+++.|. .|+|+|+|+.              ...+.++|+.+. +..++.||+|++.--
T Consensus       211 ~~~~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP  289 (393)
T 4dmg_A          211 MVRPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPP  289 (393)
T ss_dssp             TCCTTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred             HhcCCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCC
Confidence            356799999999999999988888774 4999999841              123456777653 222344999998642


Q ss_pred             eeec--------cCChHHHHHHHHhcccCCcEEEEEe
Q 010086          178 RLEK--------ASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       178 ~l~~--------~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +|..        ..+..+++.++.|+|||||++++.+
T Consensus       290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s  326 (393)
T 4dmg_A          290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSS  326 (393)
T ss_dssp             CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            1221        1123467899999999999998654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.39  E-value=3.7e-07  Score=90.06  Aligned_cols=114  Identities=9%  Similarity=0.030  Sum_probs=78.9

Q ss_pred             CCCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEE
Q 010086          112 GYLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFV  174 (518)
Q Consensus       112 gll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s  174 (518)
                      .+++++.+|||||||+|..+..|++.+ ...|+|+|+++.                ...+..+|..+.+.+++.||+|++
T Consensus        17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Ivi   96 (244)
T 3gnl_A           17 SYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVI   96 (244)
T ss_dssp             TTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             HhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEE
Confidence            357889999999999999999998876 358999999841                123567888776665557999987


Q ss_pred             cCceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEe
Q 010086          175 GGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSR  230 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~  230 (518)
                      .+. --.  --...+.+..+.|+++|.++++-.. ...+...++.- .+|.++...
T Consensus        97 agm-Gg~--lI~~IL~~~~~~L~~~~~lIlq~~~-~~~~lr~~L~~-~Gf~i~~E~  147 (244)
T 3gnl_A           97 AGM-GGT--LIRTILEEGAAKLAGVTKLILQPNI-AAWQLREWSEQ-NNWLITSEA  147 (244)
T ss_dssp             EEE-CHH--HHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHHH-HTEEEEEEE
T ss_pred             eCC-chH--HHHHHHHHHHHHhCCCCEEEEEcCC-ChHHHHHHHHH-CCCEEEEEE
Confidence            653 111  1245688899999999999998643 22222222221 457765544

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.36  E-value=8.4e-08  Score=100.14  Aligned_cols=94  Identities=19%  Similarity=0.180  Sum_probs=69.3

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCC----CCCceeEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPF----DGNTFDFVF  173 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf----~D~SFD~V~  173 (518)
                      .+++.+|||+|||+|..+..+++.|..+|+|+|+++.                ...++.+|+.+++.    ++++||+|+
T Consensus       215 ~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi  294 (396)
T 2as0_A          215 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  294 (396)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence            3578999999999999998888877679999999741                12346777765422    367999999


Q ss_pred             EcCcee--------eccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          174 VGGARL--------EKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       174 s~~~~l--------~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +.--.+        ++..+...++.++.++|||||++++...
T Consensus       295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            953211        1113345788999999999999888754

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.36  E-value=1.1e-06  Score=85.65  Aligned_cols=113  Identities=17%  Similarity=0.140  Sum_probs=75.8

Q ss_pred             CCCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC----------------CCcEEeccCCCCCCCCC-ceeEEE
Q 010086          112 GYLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS----------------KPLVISGEGHRIPFDGN-TFDFVF  173 (518)
Q Consensus       112 gll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~-SFD~V~  173 (518)
                      .+++++.+|||||||+|..+..+++.+ ...|+|+|+++.                ...+..+|..+ +++.+ .||+|+
T Consensus        11 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~-~l~~~~~~D~Iv   89 (225)
T 3kr9_A           11 SFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA-AFEETDQVSVIT   89 (225)
T ss_dssp             TTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-GCCGGGCCCEEE
T ss_pred             HhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhh-hcccCcCCCEEE
Confidence            357889999999999999999888876 358999999841                12345677632 33433 699998


Q ss_pred             EcCceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEe
Q 010086          174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSR  230 (518)
Q Consensus       174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~  230 (518)
                      ..+. --.  --...+.+..+.|+|+|+++++-.. ...+...++. -..|.++...
T Consensus        90 iaG~-Gg~--~i~~Il~~~~~~L~~~~~lVlq~~~-~~~~vr~~L~-~~Gf~i~~e~  141 (225)
T 3kr9_A           90 IAGM-GGR--LIARILEEGLGKLANVERLILQPNN-REDDLRIWLQ-DHGFQIVAES  141 (225)
T ss_dssp             EEEE-CHH--HHHHHHHHTGGGCTTCCEEEEEESS-CHHHHHHHHH-HTTEEEEEEE
T ss_pred             EcCC-ChH--HHHHHHHHHHHHhCCCCEEEEECCC-CHHHHHHHHH-HCCCEEEEEE
Confidence            7653 111  1346788999999999999997543 2222222221 1457776654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.35  E-value=2.9e-07  Score=103.48  Aligned_cols=93  Identities=12%  Similarity=0.175  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------------CCcEEeccCCC-CCCCCCceeEEEEcCc
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------------KPLVISGEGHR-IPFDGNTFDFVFVGGA  177 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------------~~l~~~~da~~-LPf~D~SFD~V~s~~~  177 (518)
                      ++.+|||+|||||..+..++..|..+|+++|+|+.                 ...++++|+.+ ++..+++||+|++.--
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP  618 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP  618 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence            68899999999999998887777667999999841                 12356788766 4666789999998541


Q ss_pred             e----------eeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          178 R----------LEKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       178 ~----------l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +          ++...+..+.+.++.|+|||||++++....
T Consensus       619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            1          222334456789999999999999987654

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.34  E-value=1.2e-06  Score=89.45  Aligned_cols=91  Identities=13%  Similarity=0.070  Sum_probs=67.0

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcC-C-----CcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIG-V-----EDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFV  174 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g-~-----~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s  174 (518)
                      .++.+|||+|||+|.++..+.+.. .     ..++|+|+++.              ...+..+|... +.+++.||+|++
T Consensus       129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD~Ii~  207 (344)
T 2f8l_A          129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVIS  207 (344)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEE
T ss_pred             CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCC-ccccCCccEEEE
Confidence            356799999999999987665432 1     57999999742              23356777655 446789999999


Q ss_pred             cCceeeccCChH------------------HHHHHHHhcccCCcEEEEEec
Q 010086          175 GGARLEKASKPL------------------DFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       175 ~~~~l~~~~dp~------------------~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +-- |.+.+...                  .+++++.+.|||||++++.+.
T Consensus       208 NPP-fg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p  257 (344)
T 2f8l_A          208 DLP-VGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  257 (344)
T ss_dssp             ECC-CSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCC-CCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            865 54443221                  478999999999999988774

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.33  E-value=3e-06  Score=89.80  Aligned_cols=114  Identities=13%  Similarity=0.110  Sum_probs=78.8

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      +.++.+|||+|||+|.++..|++.+ .+|+|+|+++.              ...++.+|+.+++..  +||+|++.-- .
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~--~fD~Vv~dPP-r  363 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVK--GFDTVIVDPP-R  363 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCT--TCSEEEECCC-T
T ss_pred             cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCcc--CCCEEEEcCC-c
Confidence            4678899999999999999888775 69999999841              123568888887532  8999998542 1


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCCC
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSS  238 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~  238 (518)
                      ..  -...+++.+ +.|||||++++..... +. ...+.. +. |++..+.-+|.|-.+
T Consensus       364 ~g--~~~~~~~~l-~~l~p~givyvsc~p~-tl-arDl~~-l~-y~l~~~~~~DmFP~T  415 (425)
T 2jjq_A          364 AG--LHPRLVKRL-NREKPGVIVYVSCNPE-TF-ARDVKM-LD-YRIDEIVALDMFPHT  415 (425)
T ss_dssp             TC--SCHHHHHHH-HHHCCSEEEEEESCHH-HH-HHHHHH-SS-CCEEEEEEECCSTTS
T ss_pred             cc--hHHHHHHHH-HhcCCCcEEEEECChH-HH-HhHHhh-Ce-EEEEEEEEECcCCCC
Confidence            11  112355555 4599999999875321 11 122333 34 999999998886554

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.29  E-value=1.7e-06  Score=91.60  Aligned_cols=117  Identities=14%  Similarity=0.153  Sum_probs=79.6

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCC----CCCCCCceeEEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHR----IPFDGNTFDFVFV  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~----LPf~D~SFD~V~s  174 (518)
                      +.++.+|||+|||+|..+..|++.+ .+|+|+|+++.               ...++.+|+.+    +|+++++||+|++
T Consensus       284 ~~~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~  362 (433)
T 1uwv_A          284 VQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL  362 (433)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEE
Confidence            4677899999999999999998774 79999999841               12356788876    5678899999998


Q ss_pred             cCceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhc-cCccEEEEeccCCCCCC
Q 010086          175 GGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLF-NSCKLVKSRDIDGIDSS  238 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf-~~~~~v~~~~v~~~~~~  238 (518)
                      .-- ...   ...+++.+. -++|++++++.......  ......+. ..|++..+.-++.|-.+
T Consensus       363 dPP-r~g---~~~~~~~l~-~~~p~~ivyvsc~p~tl--ard~~~l~~~Gy~~~~~~~~d~Fp~t  420 (433)
T 1uwv_A          363 DPA-RAG---AAGVMQQII-KLEPIRIVYVSCNPATL--ARDSEALLKAGYTIARLAMLDMFPHT  420 (433)
T ss_dssp             CCC-TTC---CHHHHHHHH-HHCCSEEEEEESCHHHH--HHHHHHHHHTTCEEEEEEEECCSTTS
T ss_pred             CCC-Ccc---HHHHHHHHH-hcCCCeEEEEECChHHH--HhhHHHHHHCCcEEEEEEEeccCCCC
Confidence            542 111   123444444 37999998886532111  12222233 46999998888876543

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.29  E-value=9e-07  Score=89.23  Aligned_cols=62  Identities=19%  Similarity=0.162  Sum_probs=46.4

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      .+.++.+|||||||+|..+..|++.+ .+|+|+|+++.               ...++.+|+.++|++  +||.|++...
T Consensus        39 ~~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~D~Vv~n~p  115 (299)
T 2h1r_A           39 KIKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KFDVCTANIP  115 (299)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC--CCSEEEEECC
T ss_pred             CCCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc--cCCEEEEcCC
Confidence            35788999999999999999998775 69999999741               122457888888775  8999999753

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.29  E-value=1.2e-06  Score=88.03  Aligned_cols=86  Identities=14%  Similarity=0.164  Sum_probs=67.9

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      +++|.+|||+|||+|.++..++..|..+|+++|+++.                ...+.++|+.+++ +.+.||.|++.. 
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~-  200 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGY-  200 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECC-
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEECC-
Confidence            6789999999999999998777777679999999841                1234678988875 367899999864 


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                       .   .....++.++.+.|||||++.+.
T Consensus       201 -p---~~~~~~l~~a~~~lk~gG~ih~~  224 (278)
T 3k6r_A          201 -V---VRTHEFIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             -C---SSGGGGHHHHHHHEEEEEEEEEE
T ss_pred             -C---CcHHHHHHHHHHHcCCCCEEEEE
Confidence             2   23456788999999999998664

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.29  E-value=1.3e-06  Score=89.35  Aligned_cols=83  Identities=11%  Similarity=0.019  Sum_probs=65.2

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      +.++.+|||+|||+|..+.. ++ +...|+|+|+++.                ...++.+|+.+.+   ++||+|++..-
T Consensus       193 ~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP  267 (336)
T 2yx1_A          193 VSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP  267 (336)
T ss_dssp             CCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT
T ss_pred             cCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc
Confidence            46789999999999999987 66 5579999999741                1235678888766   89999999631


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                        .   ....++.++.++|||||++++..
T Consensus       268 --~---~~~~~l~~~~~~L~~gG~l~~~~  291 (336)
T 2yx1_A          268 --K---FAHKFIDKALDIVEEGGVIHYYT  291 (336)
T ss_dssp             --T---TGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             --H---hHHHHHHHHHHHcCCCCEEEEEE
Confidence              1   13478999999999999988863

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.28  E-value=1.8e-06  Score=90.37  Aligned_cols=91  Identities=11%  Similarity=-0.081  Sum_probs=62.0

Q ss_pred             CCeEEEEcCCCCHhHHHHHhc------------------CCCcEEEEecCC------------------------CCCcE
Q 010086          117 SAKSLCVETQYGQDVFALKEI------------------GVEDSIGIFKKS------------------------SKPLV  154 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~~------------------g~~~v~gID~s~------------------------~~~l~  154 (518)
                      .-+|+|+||++|..+..+...                  ....|+.-|+-.                        .++.+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            478999999999887544321                  112455556431                        01234


Q ss_pred             Eec---cCCCCCCCCCceeEEEEcCceeeccCChHHH---------------------------------------HHHH
Q 010086          155 ISG---EGHRIPFDGNTFDFVFVGGARLEKASKPLDF---------------------------------------ASEI  192 (518)
Q Consensus       155 ~~~---da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~---------------------------------------l~Ei  192 (518)
                      +.|   ......||++|||+|+|+.+ |||+.+....                                       ++-.
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R  211 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYC-LHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH  211 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESC-TTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCCCCceEEEEecce-eeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            443   44557899999999999998 9998754322                                       3333


Q ss_pred             HhcccCCcEEEEEecC
Q 010086          193 VRTLKPEGFAVVHVRA  208 (518)
Q Consensus       193 ~RVLKPGG~lvi~~~~  208 (518)
                      +|.|||||++++.+..
T Consensus       212 a~eL~pGG~mvl~~~g  227 (384)
T 2efj_A          212 SEELISRGRMLLTFIC  227 (384)
T ss_dssp             HHHEEEEEEEEEEEEC
T ss_pred             HHHhccCCeEEEEEec
Confidence            8999999999998643

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.28  E-value=5.9e-07  Score=93.79  Aligned_cols=93  Identities=11%  Similarity=0.136  Sum_probs=68.9

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------------CCcEEeccCCCCCC----CCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------------KPLVISGEGHRIPF----DGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------------~~l~~~~da~~LPf----~D~SFD~V~  173 (518)
                      .++.+|||+|||+|..+..+++.|...|+|+|+++.                 ...++.+|+.+..-    .+++||+|+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            478899999999999999888877679999999841                 11245777765421    257899999


Q ss_pred             EcCce--------eeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          174 VGGAR--------LEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       174 s~~~~--------l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +.--.        .+........+.++.+.|||||++++...
T Consensus       299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            96310        12223445788999999999999998764

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.23  E-value=3.9e-07  Score=97.54  Aligned_cols=93  Identities=15%  Similarity=0.113  Sum_probs=66.2

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC---------------CCcEEeccCCCCC-CCCCceeEEEEc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS---------------KPLVISGEGHRIP-FDGNTFDFVFVG  175 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~---------------~~l~~~~da~~LP-f~D~SFD~V~s~  175 (518)
                      ++++.+|||+|||+|..+..+++.  +...|+++|+++.               ...++.+|+..++ +.+++||.|++.
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D  182 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD  182 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence            578999999999999988777763  2368999999841               1224567877765 457899999973


Q ss_pred             C-----ceeeccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 010086          176 G-----ARLEKASK----------------PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       176 ~-----~~l~~~~d----------------p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .     ..+.+-++                ..+.+.++.+.|||||+++..+
T Consensus       183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT  234 (456)
T 3m4x_A          183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST  234 (456)
T ss_dssp             CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            2     11222110                1267899999999999998864

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.22  E-value=2.6e-07  Score=96.10  Aligned_cols=91  Identities=13%  Similarity=0.164  Sum_probs=66.6

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCC----CCCceeEEEEcC
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPF----DGNTFDFVFVGG  176 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf----~D~SFD~V~s~~  176 (518)
                      ++.+|||+|||+|..+..+++. ..+|+|+|+++.               ...++.+|+.+...    .+++||+|++.-
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp  287 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP  287 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence            7789999999999999888776 479999999741               12356777766422    267999999853


Q ss_pred             cee--------eccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          177 ARL--------EKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       177 ~~l--------~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      -.+        +.......++.++.++|||||++++...
T Consensus       288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            101        1112335688999999999999988764

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.17  E-value=2.8e-06  Score=85.97  Aligned_cols=73  Identities=14%  Similarity=0.099  Sum_probs=58.5

Q ss_pred             HHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCCCcee
Q 010086          104 VFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGNTFD  170 (518)
Q Consensus       104 l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~SFD  170 (518)
                      +.+.+++...+.++.+|||||||+|..+..|.+.+ .+|+|||+++.             ...++.+|+.++++++.+||
T Consensus        38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD  116 (295)
T 3gru_A           38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFN  116 (295)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCS
T ss_pred             HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCcc
Confidence            34444444456788999999999999999998875 79999999852             12357899999999999999


Q ss_pred             EEEEcCc
Q 010086          171 FVFVGGA  177 (518)
Q Consensus       171 ~V~s~~~  177 (518)
                      .|+++..
T Consensus       117 ~Iv~NlP  123 (295)
T 3gru_A          117 KVVANLP  123 (295)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCc
Confidence            9998763

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.16  E-value=3.6e-06  Score=83.00  Aligned_cols=102  Identities=11%  Similarity=0.071  Sum_probs=73.1

Q ss_pred             HHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCC
Q 010086           97 AVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRI  162 (518)
Q Consensus        97 ~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~L  162 (518)
                      ....+..+.+.+.+.   .+..+|||||||+|.++..+.  +...++|+|+++.              +..+..+|...-
T Consensus        89 rLp~ld~fY~~i~~~---~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~  163 (253)
T 3frh_A           89 RLAELDTLYDFIFSA---ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCA  163 (253)
T ss_dssp             HGGGHHHHHHHHTSS---CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTS
T ss_pred             HhhhHHHHHHHHhcC---CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccC
Confidence            345555555444433   567899999999999997766  5579999999841              112456787777


Q ss_pred             CCCCCceeEEEEcCceeeccCChH-HHHHHHHhcccCCcEEEEE
Q 010086          163 PFDGNTFDFVFVGGARLEKASKPL-DFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       163 Pf~D~SFD~V~s~~~~l~~~~dp~-~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |+++ +||+|++.-+ +||+++.. ...-.+..-|+|+|+++-.
T Consensus       164 ~~~~-~~DvvLllk~-lh~LE~q~~~~~~~ll~aL~~~~vvVsf  205 (253)
T 3frh_A          164 PPAE-AGDLALIFKL-LPLLEREQAGSAMALLQSLNTPRMAVSF  205 (253)
T ss_dssp             CCCC-BCSEEEEESC-HHHHHHHSTTHHHHHHHHCBCSEEEEEE
T ss_pred             CCCC-CcchHHHHHH-HHHhhhhchhhHHHHHHHhcCCCEEEEc
Confidence            8766 8999999876 78875432 2344888899999887664

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.14  E-value=5e-06  Score=83.27  Aligned_cols=112  Identities=8%  Similarity=-0.019  Sum_probs=76.2

Q ss_pred             hccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHH-hcCCCcEEEEecCCC----CCc--------
Q 010086           87 DMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALK-EIGVEDSIGIFKKSS----KPL--------  153 (518)
Q Consensus        87 ~~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~-~~g~~~v~gID~s~~----~~l--------  153 (518)
                      ..|+|+.+-|-.        ++.+..+++++.+|||||||+|..++... +.+...|+|+|+...    +..        
T Consensus        69 g~YrSRAAfKL~--------ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~i  140 (282)
T 3gcz_A           69 GIAVSRGSAKLR--------WMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNL  140 (282)
T ss_dssp             SBCSSTHHHHHH--------HHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGG
T ss_pred             CCEecHHHHHHH--------HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCce
Confidence            667777666632        23344578999999999999999998655 456678999998632    111        


Q ss_pred             E-EeccCCCCCCCCCceeEEEEcCceeeccCChH-------HHHHHHHhcccCC--cEEEEEecC
Q 010086          154 V-ISGEGHRIPFDGNTFDFVFVGGARLEKASKPL-------DFASEIVRTLKPE--GFAVVHVRA  208 (518)
Q Consensus       154 ~-~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~-------~~l~Ei~RVLKPG--G~lvi~~~~  208 (518)
                      + ...+..-..++++.+|+|+|..+ .+ .-.+.       ..+.-+.++||||  |.+++-+-+
T Consensus       141 i~~~~~~dv~~l~~~~~DvVLSDmA-pn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          141 IRFKDKTDVFNMEVIPGDTLLCDIG-ES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             EEEECSCCGGGSCCCCCSEEEECCC-CC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             EEeeCCcchhhcCCCCcCEEEecCc-cC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            1 12222333567899999999876 44 32221       2466678999999  999997654

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.08  E-value=6.3e-06  Score=87.41  Aligned_cols=92  Identities=11%  Similarity=0.095  Sum_probs=66.4

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc--------------CCCcEEEEecCCC-----------------CCcEEeccCCCC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI--------------GVEDSIGIFKKSS-----------------KPLVISGEGHRI  162 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~--------------g~~~v~gID~s~~-----------------~~l~~~~da~~L  162 (518)
                      ..++.+|||.|||+|.++..+.+.              ....++|+|+++.                 ...+.++|....
T Consensus       169 ~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~  248 (445)
T 2okc_A          169 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK  248 (445)
T ss_dssp             CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS
T ss_pred             CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCC
Confidence            356789999999999988655432              1257999998731                 234678888776


Q ss_pred             CCCCCceeEEEEcCceeeccCC-----------------hHHHHHHHHhcccCCcEEEEEec
Q 010086          163 PFDGNTFDFVFVGGARLEKASK-----------------PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       163 Pf~D~SFD~V~s~~~~l~~~~d-----------------p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +... .||+|+++-- +.+...                 ...+++++.+.|||||++++.+.
T Consensus       249 ~~~~-~fD~Iv~NPP-f~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          249 EPST-LVDVILANPP-FGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             CCSS-CEEEEEECCC-SSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccC-CcCEEEECCC-CCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence            6543 8999999753 333211                 13689999999999999888764

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.02  E-value=2.3e-05  Score=79.08  Aligned_cols=124  Identities=15%  Similarity=0.093  Sum_probs=81.8

Q ss_pred             hhhhhhccCCCcchhhccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC
Q 010086           72 ANKAVRSNIVSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS  150 (518)
Q Consensus        72 a~r~~~~~~~~~~~~~~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~  150 (518)
                      |.++++.   +...-..|+|+.+.|-.    ++.    +.++++++.+|||+||++|..++.+.+ .|...|+|+|+...
T Consensus        48 ar~~l~~---~~~~~g~yrSRaa~KL~----ei~----ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~  116 (300)
T 3eld_A           48 ARRYLKE---GRTDVGISVSRGAAKIR----WLH----ERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIE  116 (300)
T ss_dssp             HHHHHHH---TCSSSCCCSSTTHHHHH----HHH----HHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             HHHHHHc---CCccCCCccchHHHHHH----HHH----HhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccc
Confidence            5566653   22233578888777733    222    226789999999999999999988876 46668899998631


Q ss_pred             ----CCc--------E-EeccCCCCCCCCCceeEEEEcCceeeccCCh-------HHHHHHHHhcccCC-cEEEEEecC
Q 010086          151 ----KPL--------V-ISGEGHRIPFDGNTFDFVFVGGARLEKASKP-------LDFASEIVRTLKPE-GFAVVHVRA  208 (518)
Q Consensus       151 ----~~l--------~-~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp-------~~~l~Ei~RVLKPG-G~lvi~~~~  208 (518)
                          |..        + ......-.-++.+.+|+|+|..+ .+ .-.+       ...+.-+.++|||| |.+++-+-.
T Consensus       117 ~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~A-Pn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          117 GHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIG-ES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             TSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC-CC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             cccccccccccCCceEEeecCceeeecCCCCcCEEeecCc-CC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence                111        1 12222223456789999999765 43 3222       13466678999999 999997654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=97.96  E-value=1.3e-05  Score=83.01  Aligned_cols=112  Identities=13%  Similarity=0.105  Sum_probs=74.3

Q ss_pred             CCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCC--CCC-------------
Q 010086          117 SAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIP--FDG-------------  166 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LP--f~D-------------  166 (518)
                      +.+|||+|||+|.++..+++. ..+|+|+|+++.               ...++.+|+.++.  +.+             
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~  292 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK  292 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGG
T ss_pred             CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccc
Confidence            578999999999999988874 479999999841               1234567766541  222             


Q ss_pred             -CceeEEEEcCceeeccCChH-HHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCCC
Q 010086          167 -NTFDFVFVGGARLEKASKPL-DFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSS  238 (518)
Q Consensus       167 -~SFD~V~s~~~~l~~~~dp~-~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~  238 (518)
                       ++||+|+..-        |. .+..++.+.|+|+|.++...-...+ ....+..|-..|++..+.-++.|-.+
T Consensus       293 ~~~fD~Vv~dP--------Pr~g~~~~~~~~l~~~g~ivyvsc~p~t-~ard~~~l~~~y~~~~~~~~D~FP~T  357 (369)
T 3bt7_A          293 SYQCETIFVDP--------PRSGLDSETEKMVQAYPRILYISCNPET-LCKNLETLSQTHKVERLALFDQFPYT  357 (369)
T ss_dssp             GCCEEEEEECC--------CTTCCCHHHHHHHTTSSEEEEEESCHHH-HHHHHHHHHHHEEEEEEEEECCSTTS
T ss_pred             cCCCCEEEECc--------CccccHHHHHHHHhCCCEEEEEECCHHH-HHHHHHHHhhCcEEEEEEeeccCCCC
Confidence             4899998743        11 2356788899999987765422211 11233333346999999988875443

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.96  E-value=7.5e-06  Score=85.04  Aligned_cols=90  Identities=17%  Similarity=0.062  Sum_probs=63.3

Q ss_pred             CCeEEEEcCCCCHhHHHHH--------h----cC-----CCcEEEEecCCC----------------CCcEEe---ccCC
Q 010086          117 SAKSLCVETQYGQDVFALK--------E----IG-----VEDSIGIFKKSS----------------KPLVIS---GEGH  160 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~--------~----~g-----~~~v~gID~s~~----------------~~l~~~---~da~  160 (518)
                      .-+|+|+||++|..+..+.        +    .+     ...|+.-|+-..                ++.++.   +...
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            4689999999997663322        1    12     135777776321                123444   4555


Q ss_pred             CCCCCCCceeEEEEcCceeeccCChH---------------------------------HHHHHHHhcccCCcEEEEEec
Q 010086          161 RIPFDGNTFDFVFVGGARLEKASKPL---------------------------------DFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       161 ~LPf~D~SFD~V~s~~~~l~~~~dp~---------------------------------~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ...||++|||+|+|+.+ |||+.+..                                 .+++-.+|.|||||++++.+.
T Consensus       132 ~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~  210 (359)
T 1m6e_X          132 GRLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             SCCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred             hccCCCCceEEEEehhh-hhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence            68999999999999998 99987522                                 137777999999999999853

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=97.86  E-value=3.2e-05  Score=81.05  Aligned_cols=108  Identities=10%  Similarity=-0.089  Sum_probs=74.0

Q ss_pred             HHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCC---------------------------------------CcE
Q 010086          102 SSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGV---------------------------------------EDS  142 (518)
Q Consensus       102 ~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~---------------------------------------~~v  142 (518)
                      ..+...++.....+++..+||.+||+|.++..++..+.                                       ..+
T Consensus       187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  266 (393)
T 3k0b_A          187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI  266 (393)
T ss_dssp             HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence            34555555555567889999999999998755544221                                       359


Q ss_pred             EEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCceeecc---CChHHHHHHHHhcccC--CcE
Q 010086          143 IGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKA---SKPLDFASEIVRTLKP--EGF  201 (518)
Q Consensus       143 ~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~---~dp~~~l~Ei~RVLKP--GG~  201 (518)
                      +|+|+++.                ...+.++|+.+++.++ +||+|+++--+-..+   .+...+++++.++||+  ||.
T Consensus       267 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~-~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~  345 (393)
T 3k0b_A          267 IGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTED-EYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWS  345 (393)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCC-CSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCE
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCC-CCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCE
Confidence            99999841                1346789999998765 899999984201112   1223567777788877  999


Q ss_pred             EEEEecCCC
Q 010086          202 AVVHVRAKD  210 (518)
Q Consensus       202 lvi~~~~~~  210 (518)
                      +++.++..+
T Consensus       346 ~~iit~~~~  354 (393)
T 3k0b_A          346 VYVLTSYEL  354 (393)
T ss_dssp             EEEEECCTT
T ss_pred             EEEEECCHH
Confidence            988876543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.83  E-value=2.7e-05  Score=76.95  Aligned_cols=69  Identities=9%  Similarity=0.001  Sum_probs=52.2

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCC----Cc
Q 010086          106 QDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDG----NT  168 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D----~S  168 (518)
                      +.+++...+.++.+|||||||+|..+..|.+.+ .+|+|+|+++.             ...++++|+.+++|++    +.
T Consensus        19 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~   97 (255)
T 3tqs_A           19 QKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKP   97 (255)
T ss_dssp             HHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSSC
T ss_pred             HHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCCC
Confidence            334444346788999999999999999998877 79999999741             1235789999998864    57


Q ss_pred             eeEEEEcC
Q 010086          169 FDFVFVGG  176 (518)
Q Consensus       169 FD~V~s~~  176 (518)
                      || |+++.
T Consensus        98 ~~-vv~Nl  104 (255)
T 3tqs_A           98 LR-VVGNL  104 (255)
T ss_dssp             EE-EEEEC
T ss_pred             eE-EEecC
Confidence            99 55543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=97.83  E-value=2e-05  Score=78.68  Aligned_cols=105  Identities=7%  Similarity=-0.022  Sum_probs=72.0

Q ss_pred             HHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC--------------CCcEEeccCCC
Q 010086           97 AVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS--------------KPLVISGEGHR  161 (518)
Q Consensus        97 ~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~--------------~~l~~~~da~~  161 (518)
                      ....+..+...+.+.  +.+..+|||||||+|-++..+... +...++++|+++.              ...+...|...
T Consensus       115 RLp~lD~fY~~i~~~--i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~  192 (281)
T 3lcv_B          115 RLPHLDEFYRELFRH--LPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLE  192 (281)
T ss_dssp             HGGGHHHHHHHHGGG--SCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred             HhHhHHHHHHHHHhc--cCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecc
Confidence            344455544433332  355779999999999998777654 5579999999841              11123444333


Q ss_pred             CCCCCCceeEEEEcCceeeccCChHH-HHHHHHhcccCCcEEEEE
Q 010086          162 IPFDGNTFDFVFVGGARLEKASKPLD-FASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       162 LPf~D~SFD~V~s~~~~l~~~~dp~~-~l~Ei~RVLKPGG~lvi~  205 (518)
                       +-+.+.+|+|++.-+ ++|+++..+ ..-++...|+|||+++-.
T Consensus       193 -~~p~~~~DvaL~lkt-i~~Le~q~kg~g~~ll~aL~~~~vvVSf  235 (281)
T 3lcv_B          193 -DRLDEPADVTLLLKT-LPCLETQQRGSGWEVIDIVNSPNIVVTF  235 (281)
T ss_dssp             -SCCCSCCSEEEETTC-HHHHHHHSTTHHHHHHHHSSCSEEEEEE
T ss_pred             -cCCCCCcchHHHHHH-HHHhhhhhhHHHHHHHHHhCCCCEEEec
Confidence             336788999999987 899865432 333999999999998775

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.82  E-value=2.4e-05  Score=78.05  Aligned_cols=67  Identities=13%  Similarity=0.083  Sum_probs=53.0

Q ss_pred             HHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------CCcEEeccCCCCCCCCC-ceeEEEE
Q 010086          108 LISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------KPLVISGEGHRIPFDGN-TFDFVFV  174 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~~l~~~~da~~LPf~D~-SFD~V~s  174 (518)
                      +++...+.++ +|||||||+|..+..|.+.+ .+|+|+|+++.            ...++.+|+.++++++. .||.|++
T Consensus        39 Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~iv~  116 (271)
T 3fut_A           39 IVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVA  116 (271)
T ss_dssp             HHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEEEEE
T ss_pred             HHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccEEEe
Confidence            3333346778 99999999999999998887 79999999852            12357899999998764 7899998


Q ss_pred             cC
Q 010086          175 GG  176 (518)
Q Consensus       175 ~~  176 (518)
                      +.
T Consensus       117 Nl  118 (271)
T 3fut_A          117 NL  118 (271)
T ss_dssp             EE
T ss_pred             cC
Confidence            75

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=97.75  E-value=5.2e-05  Score=79.19  Aligned_cols=107  Identities=10%  Similarity=0.027  Sum_probs=74.8

Q ss_pred             HHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCC---------------------------------------CcE
Q 010086          102 SSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGV---------------------------------------EDS  142 (518)
Q Consensus       102 ~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~---------------------------------------~~v  142 (518)
                      ..+...++.....+++.++||.+||+|.++..++..+.                                       ..|
T Consensus       181 e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  260 (385)
T 3ldu_A          181 ETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI  260 (385)
T ss_dssp             HHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred             HHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence            44555556655567889999999999998865544321                                       369


Q ss_pred             EEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCceeecc---CChHHHHHHHHhcccC--CcE
Q 010086          143 IGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKA---SKPLDFASEIVRTLKP--EGF  201 (518)
Q Consensus       143 ~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~---~dp~~~l~Ei~RVLKP--GG~  201 (518)
                      +|+|+++.                ...+.++|+.+++.+ ++||+|+++--+....   .+...+++++.++||+  ||.
T Consensus       261 ~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~  339 (385)
T 3ldu_A          261 YGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWS  339 (385)
T ss_dssp             EEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCE
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCE
Confidence            99999841                123568899988875 4899999975312222   1234577888889988  888


Q ss_pred             EEEEecCC
Q 010086          202 AVVHVRAK  209 (518)
Q Consensus       202 lvi~~~~~  209 (518)
                      +++.++..
T Consensus       340 ~~iit~~~  347 (385)
T 3ldu_A          340 YYLITSYE  347 (385)
T ss_dssp             EEEEESCT
T ss_pred             EEEEECCH
Confidence            88887654

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.74  E-value=0.00016  Score=71.54  Aligned_cols=111  Identities=10%  Similarity=0.032  Sum_probs=71.9

Q ss_pred             hccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CC----CcEEEEe--cCCCCC-----cE
Q 010086           87 DMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-GV----EDSIGIF--KKSSKP-----LV  154 (518)
Q Consensus        87 ~~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~----~~v~gID--~s~~~~-----l~  154 (518)
                      ..|+|+.+-|        +.++.+..+++++.+|||+||++|..++..++. ++    +.++|+|  +.+-.+     .+
T Consensus        52 g~yRSRAayK--------L~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~  123 (269)
T 2px2_A           52 GHPVSRGTAK--------LRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNI  123 (269)
T ss_dssp             SCCSSTHHHH--------HHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGG
T ss_pred             CCcccHHHHH--------HHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceE
Confidence            4577775555        234455568999999999999999999877664 22    2445566  222211     12


Q ss_pred             Ee---c-cCCCCCCCCCceeEEEEcCceeeccCChH-------HHHHHHHhcccCCc-EEEEEecCC
Q 010086          155 IS---G-EGHRIPFDGNTFDFVFVGGARLEKASKPL-------DFASEIVRTLKPEG-FAVVHVRAK  209 (518)
Q Consensus       155 ~~---~-da~~LPf~D~SFD~V~s~~~~l~~~~dp~-------~~l~Ei~RVLKPGG-~lvi~~~~~  209 (518)
                      ++   + |..++  +...+|+|+|-.+  .+..++.       .++.-+.++||||| .+++=+-+.
T Consensus       124 i~~~~G~Df~~~--~~~~~DvVLSDMA--PnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg  186 (269)
T 2px2_A          124 VTMKSGVDVFYK--PSEISDTLLCDIG--ESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP  186 (269)
T ss_dssp             EEEECSCCGGGS--CCCCCSEEEECCC--CCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             EEeeccCCccCC--CCCCCCEEEeCCC--CCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence            23   6 87764  3568999999764  2332321       24555669999999 888866554

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=97.73  E-value=6.7e-05  Score=78.48  Aligned_cols=108  Identities=10%  Similarity=-0.049  Sum_probs=74.5

Q ss_pred             HHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCC---------------------------------------CcE
Q 010086          102 SSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGV---------------------------------------EDS  142 (518)
Q Consensus       102 ~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~---------------------------------------~~v  142 (518)
                      ..+...++.....+++..+||.+||+|.++...+..+.                                       ..+
T Consensus       180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v  259 (384)
T 3ldg_A          180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI  259 (384)
T ss_dssp             HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence            34555555555567889999999999998755543221                                       359


Q ss_pred             EEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCceeeccC---ChHHHHHHHHhcccC--CcE
Q 010086          143 IGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKAS---KPLDFASEIVRTLKP--EGF  201 (518)
Q Consensus       143 ~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~---dp~~~l~Ei~RVLKP--GG~  201 (518)
                      +|+|+++.                ...+.++|+.+++.++ +||+|+++-=+-..+.   +...+++++.++||+  ||.
T Consensus       260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~-~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~  338 (384)
T 3ldg_A          260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNK-INGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWS  338 (384)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCC-CSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSE
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccC-CcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcE
Confidence            99999741                1235789999998765 8999999742011222   234577888888887  999


Q ss_pred             EEEEecCCC
Q 010086          202 AVVHVRAKD  210 (518)
Q Consensus       202 lvi~~~~~~  210 (518)
                      +++.++..+
T Consensus       339 ~~iit~~~~  347 (384)
T 3ldg_A          339 QFILTNDTD  347 (384)
T ss_dssp             EEEEESCTT
T ss_pred             EEEEECCHH
Confidence            988887543

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=97.68  E-value=0.00012  Score=74.31  Aligned_cols=92  Identities=4%  Similarity=-0.040  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC---------------CCcEEeccCCCCCCCC---CceeEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS---------------KPLVISGEGHRIPFDG---NTFDFVF  173 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D---~SFD~V~  173 (518)
                      ++++.+|||+|||+|..+..+++.  +...|+++|+++.               ...++.+|+.+++..+   ++||.|+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl  179 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  179 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence            578999999999999999877763  3468999999741               1234678888876543   5899999


Q ss_pred             Ec----C-ceeeccC-----------Ch-------HHHHHHHHhcccCCcEEEEEe
Q 010086          174 VG----G-ARLEKAS-----------KP-------LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       174 s~----~-~~l~~~~-----------dp-------~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +.    . ..+..-+           +.       .+.+..+.+.|| ||+++..+
T Consensus       180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsT  234 (309)
T 2b9e_A          180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYST  234 (309)
T ss_dssp             ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEE
T ss_pred             EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEEC
Confidence            62    1 1132211           11       135677778887 99887754

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.67  E-value=0.00028  Score=64.38  Aligned_cols=89  Identities=6%  Similarity=-0.056  Sum_probs=62.5

Q ss_pred             CCCCeEEEEcCCCC-HhHHHHHh-cCCCcEEEEecCCCCCcEEeccCCCCCCCC--CceeEEEEcCceeeccCChHHHHH
Q 010086          115 SQSAKSLCVETQYG-QDVFALKE-IGVEDSIGIFKKSSKPLVISGEGHRIPFDG--NTFDFVFVGGARLEKASKPLDFAS  190 (518)
Q Consensus       115 ~~~~rvLDVGcGtG-~~~~~L~~-~g~~~v~gID~s~~~~l~~~~da~~LPf~D--~SFD~V~s~~~~l~~~~dp~~~l~  190 (518)
                      +++.+||+||||.| ..+..|++ .| .+|+++|+++....++++|.-+ |..+  ..||+|++..-    -++....+.
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~g-~~V~atDInp~Av~~v~dDiF~-P~~~~Y~~~DLIYsirP----P~El~~~i~  107 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHSK-VDLVLTDIKPSHGGIVRDDITS-PRMEIYRGAALIYSIRP----PAEIHSSLM  107 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHSC-CEEEEECSSCSSTTEECCCSSS-CCHHHHTTEEEEEEESC----CTTTHHHHH
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhCC-CeEEEEECCccccceEEccCCC-CcccccCCcCEEEEcCC----CHHHHHHHH
Confidence            46689999999999 68999987 77 5899999998766688888876 5544  48999998652    122334455


Q ss_pred             HHHhcccCCcEEEEEecCCCc
Q 010086          191 EIVRTLKPEGFAVVHVRAKDE  211 (518)
Q Consensus       191 Ei~RVLKPGG~lvi~~~~~~~  211 (518)
                      ++.+-  -|.-++|..-.++.
T Consensus       108 ~lA~~--v~adliI~pL~~E~  126 (153)
T 2k4m_A          108 RVADA--VGARLIIKPLTGED  126 (153)
T ss_dssp             HHHHH--HTCEEEEECBTTBC
T ss_pred             HHHHH--cCCCEEEEcCCCCc
Confidence            55553  25557776433443

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.65  E-value=9.2e-05  Score=77.06  Aligned_cols=81  Identities=10%  Similarity=0.051  Sum_probs=67.5

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC------C--cEEeccCCCCCCCCCceeEEEEcCceeeccCC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK------P--LVISGEGHRIPFDGNTFDFVFVGGARLEKASK  184 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~------~--l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~d  184 (518)
                      .+++|.++||+||.+|..+..|.+.| ..|+|||+.+-.      +  ..+++|+.....+++.||.|+|-.+     .+
T Consensus       208 ~l~~G~~vlDLGAaPGGWT~~l~~rg-~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~-----~~  281 (375)
T 4auk_A          208 RLANGMWAVDLGACPGGWTYQLVKRN-MWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMV-----EK  281 (375)
T ss_dssp             HSCTTCEEEEETCTTCHHHHHHHHTT-CEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCS-----SC
T ss_pred             cCCCCCEEEEeCcCCCHHHHHHHHCC-CEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCC-----CC
Confidence            47899999999999999999998887 799999986521      2  2468899888888889999999654     46


Q ss_pred             hHHHHHHHHhcccCC
Q 010086          185 PLDFASEIVRTLKPE  199 (518)
Q Consensus       185 p~~~l~Ei~RVLKPG  199 (518)
                      |.+.+.-+.+.|..|
T Consensus       282 p~~~~~l~~~wl~~~  296 (375)
T 4auk_A          282 PAKVAALMAQWLVNG  296 (375)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             hHHhHHHHHHHHhcc
Confidence            888888888888887

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.64  E-value=6.1e-06  Score=81.66  Aligned_cols=65  Identities=14%  Similarity=0.212  Sum_probs=49.8

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC-------C----------------CCcEEeccCCCC-C-CCC--C
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS-------S----------------KPLVISGEGHRI-P-FDG--N  167 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~-------~----------------~~l~~~~da~~L-P-f~D--~  167 (518)
                      .++.+|||+|||+|..+..|++.| .+|+|+|+++       .                ...++++|+.++ + +++  +
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~  160 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG  160 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHTT-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred             CCcCeEEEeeCccCHHHHHHHHhC-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence            467899999999999999888876 6999999987       2                123567887764 4 666  8


Q ss_pred             ceeEEEEcCceeec
Q 010086          168 TFDFVFVGGARLEK  181 (518)
Q Consensus       168 SFD~V~s~~~~l~~  181 (518)
                      +||+|++.-. +++
T Consensus       161 ~fD~V~~dP~-~~~  173 (258)
T 2r6z_A          161 KPDIVYLDPM-YPE  173 (258)
T ss_dssp             CCSEEEECCC-C--
T ss_pred             CccEEEECCC-CCC
Confidence            9999999764 444

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.51  E-value=9e-05  Score=80.80  Aligned_cols=94  Identities=16%  Similarity=0.054  Sum_probs=64.8

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHh----cC---------------CCcEEEEecCCC--------------C------CcE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKE----IG---------------VEDSIGIFKKSS--------------K------PLV  154 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~----~g---------------~~~v~gID~s~~--------------~------~l~  154 (518)
                      ..++.+|||.+||+|.++..+.+    .+               ...++|+|+++.              .      ..+
T Consensus       167 p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I  246 (541)
T 2ar0_A          167 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI  246 (541)
T ss_dssp             CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred             cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCe
Confidence            35678999999999998754432    11               137999998731              1      345


Q ss_pred             EeccCCCCC-CCCCceeEEEEcCceeeccCC--------------hHHHHHHHHhcccCCcEEEEEecC
Q 010086          155 ISGEGHRIP-FDGNTFDFVFVGGARLEKASK--------------PLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       155 ~~~da~~LP-f~D~SFD~V~s~~~~l~~~~d--------------p~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      .++|....+ ++++.||+|+++-- +.....              ...++..+.+.|||||++++.+..
T Consensus       247 ~~gDtL~~~~~~~~~fD~Vv~NPP-f~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~  314 (541)
T 2ar0_A          247 RLGNTLGSDGENLPKAHIVATNPP-FGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD  314 (541)
T ss_dssp             EESCTTSHHHHTSCCEEEEEECCC-CTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             EeCCCcccccccccCCeEEEECCC-cccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence            677765543 56789999999752 222111              126889999999999998887643

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.50  E-value=0.00099  Score=67.19  Aligned_cols=129  Identities=12%  Similarity=0.061  Sum_probs=82.3

Q ss_pred             HHhhHHHHHHHHHH-cCCCCCCCeEEEEcC------CCCHhHHHHHhcCC--CcEEEEecCCCC---CcEEeccCCCCCC
Q 010086           97 AVNFYSSVFQDLIS-EGYLSQSAKSLCVET------QYGQDVFALKEIGV--EDSIGIFKKSSK---PLVISGEGHRIPF  164 (518)
Q Consensus        97 ~v~~~~~l~~~L~~-~gll~~~~rvLDVGc------GtG~~~~~L~~~g~--~~v~gID~s~~~---~l~~~~da~~LPf  164 (518)
                      .+.-|+++.+.|-. .--++.|.+|||+|+      -+|.  ..+++.+.  ..++++|+.+..   ...++||...+..
T Consensus        89 nv~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~sda~~~IqGD~~~~~~  166 (344)
T 3r24_A           89 NVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHT  166 (344)
T ss_dssp             HHHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGEEE
T ss_pred             eHHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCcccccCCCeEEEcccccccc
Confidence            45678899988843 234677999999997      4455  34555432  389999998742   3457899765433


Q ss_pred             CCCceeEEEEcCc--eeecc--CC-----h-HHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEe
Q 010086          165 DGNTFDFVFVGGA--RLEKA--SK-----P-LDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSR  230 (518)
Q Consensus       165 ~D~SFD~V~s~~~--~l~~~--~d-----p-~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~  230 (518)
                       .+.||+|+|-.+  .--+.  +.     . +.++.-+.++|||||.+++=+-++...  ..+.++.+.|+.|+.+
T Consensus       167 -~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~--~~L~~lrk~F~~VK~f  239 (344)
T 3r24_A          167 -ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN--ADLYKLMGHFSWWTAF  239 (344)
T ss_dssp             -SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC--HHHHHHHTTEEEEEEE
T ss_pred             -CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCH--HHHHHHHhhCCeEEEE
Confidence             478999999654  00111  11     1 245566778999999999976555442  3354555556555544

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.47  E-value=3.9e-05  Score=76.12  Aligned_cols=84  Identities=10%  Similarity=0.127  Sum_probs=58.5

Q ss_pred             CCCC--CeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------------------CCcEEeccCCC-CCCCC
Q 010086          114 LSQS--AKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------------------KPLVISGEGHR-IPFDG  166 (518)
Q Consensus       114 l~~~--~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------------------~~l~~~~da~~-LPf~D  166 (518)
                      ++++  .+|||++||+|..+..++..| .+|+++|+++.                        ...++.+|+.+ |+...
T Consensus        84 l~~g~~~~VLDl~~G~G~dal~lA~~g-~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~  162 (258)
T 2oyr_A           84 IKGDYLPDVVDATAGLGRDAFVLASVG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT  162 (258)
T ss_dssp             CBTTBCCCEEETTCTTCHHHHHHHHHT-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCS
T ss_pred             ccCCCCCEEEEcCCcCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCc
Confidence            4566  899999999999998888877 58999999851                        01245677765 45323


Q ss_pred             CceeEEEEcCceeeccCChHHHHHHHHhcccCCc
Q 010086          167 NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEG  200 (518)
Q Consensus       167 ~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG  200 (518)
                      ++||+|++.-. +++- ....++++..|+||+.+
T Consensus       163 ~~fDvV~lDP~-y~~~-~~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          163 PRPQVVYLDPM-FPHK-QKSALVKKEMRVFQSLV  194 (258)
T ss_dssp             SCCSEEEECCC-CCCC-CC-----HHHHHHHHHS
T ss_pred             ccCCEEEEcCC-CCCc-ccchHHHHHHHHHHHhh
Confidence            47999999876 6552 23356778889998866

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.46  E-value=0.00012  Score=71.78  Aligned_cols=61  Identities=15%  Similarity=0.091  Sum_probs=47.2

Q ss_pred             HHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC--------C---CCcEEeccCCCCCCCCC
Q 010086          107 DLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS--------S---KPLVISGEGHRIPFDGN  167 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~--------~---~~l~~~~da~~LPf~D~  167 (518)
                      .+++...+.++.+|||||||+|..+..|.+.|..+++|+|+++        .   ...++.+|+.++||++.
T Consensus        22 ~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~   93 (249)
T 3ftd_A           22 KIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSL   93 (249)
T ss_dssp             HHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGS
T ss_pred             HHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHc
Confidence            3344444668899999999999999999887657999999973        1   11357899999998864

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.39  E-value=0.00094  Score=65.44  Aligned_cols=119  Identities=14%  Similarity=0.128  Sum_probs=79.8

Q ss_pred             hhhhhhhccCCCcchhhccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHH-hcCCCcEEEEecCC
Q 010086           71 TANKAVRSNIVSPSRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALK-EIGVEDSIGIFKKS  149 (518)
Q Consensus        71 ~a~r~~~~~~~~~~~~~~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~-~~g~~~v~gID~s~  149 (518)
                      .|+++++.   +... ..|.|+.+-|-        .++.+..+++++.+|||+||++|..++..+ +.|...|+|+|+-.
T Consensus        45 ~ar~~l~~---g~~~-g~yrSRa~~KL--------~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~  112 (267)
T 3p8z_A           45 EAKEGLKR---GETT-HHAVSRGSAKL--------QWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGG  112 (267)
T ss_dssp             HHHHHHHT---TCCS-SCCSSTHHHHH--------HHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCS
T ss_pred             HHHHHHhc---CCcC-CCccchHHHHH--------HHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCC
Confidence            36666764   3333 67788766662        234455578999999999999999998554 45777999999863


Q ss_pred             C----CCc----------EEec-cCCCCCCCCCceeEEEEcCceeeccCChH-------HHHHHHHhcccCCcEEEEEe
Q 010086          150 S----KPL----------VISG-EGHRIPFDGNTFDFVFVGGARLEKASKPL-------DFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       150 ~----~~l----------~~~~-da~~LPf~D~SFD~V~s~~~~l~~~~dp~-------~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .    |.+          +.++ |...+|=  ..+|.|+|--+  +..++|.       +++.-+.+.|++ |-+++-+
T Consensus       113 ~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~--~~~DtllcDIg--eSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KV  186 (267)
T 3p8z_A          113 PGHEEPVPMSTYGWNIVKLMSGKDVFYLPP--EKCDTLLCDIG--ESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKV  186 (267)
T ss_dssp             TTSCCCCCCCCTTTTSEEEECSCCGGGCCC--CCCSEEEECCC--CCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEE
T ss_pred             CCccCcchhhhcCcCceEEEeccceeecCC--ccccEEEEecC--CCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEE
Confidence            2    111          3456 7655532  56999999765  4444553       255556788899 6776654

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.37  E-value=0.00012  Score=72.53  Aligned_cols=88  Identities=16%  Similarity=0.109  Sum_probs=59.6

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-------CC------CcEEEEecCCC--------------------------C----
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-------GV------EDSIGIFKKSS--------------------------K----  151 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-------g~------~~v~gID~s~~--------------------------~----  151 (518)
                      ++..+||+||+|+|..+..+.+.       +.      .++++++..+-                          +    
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            34579999999999987554321       21      47999997540                          0    


Q ss_pred             ---------C----cEEeccCCC-CCCCCC----ceeEEEEcCceeeccCCh----HHHHHHHHhcccCCcEEEE
Q 010086          152 ---------P----LVISGEGHR-IPFDGN----TFDFVFVGGARLEKASKP----LDFASEIVRTLKPEGFAVV  204 (518)
Q Consensus       152 ---------~----l~~~~da~~-LPf~D~----SFD~V~s~~~~l~~~~dp----~~~l~Ei~RVLKPGG~lvi  204 (518)
                               .    .++.+|+.+ ||--++    .||+||.-.  |.-..+|    ..+++++.|.|||||+++.
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~--fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG--FAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS--SCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC--CCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                     0    024677766 554333    799999854  4433344    3689999999999999884

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.37  E-value=0.00068  Score=68.33  Aligned_cols=98  Identities=17%  Similarity=0.136  Sum_probs=68.9

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCCCHhHHHHH-hcCCCcEEEEecCCC----CCc----------EEec-cCCCCCCCCCce
Q 010086          106 QDLISEGYLSQSAKSLCVETQYGQDVFALK-EIGVEDSIGIFKKSS----KPL----------VISG-EGHRIPFDGNTF  169 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGtG~~~~~L~-~~g~~~v~gID~s~~----~~l----------~~~~-da~~LPf~D~SF  169 (518)
                      .++.+..+++++.+||||||++|..++..+ +.|...|+|+|+-..    |.+          +..+ |...++-  ..+
T Consensus        84 ~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~  161 (321)
T 3lkz_A           84 RWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECC  161 (321)
T ss_dssp             HHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCC
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCC
Confidence            344556788999999999999999998544 457778999998642    211          1234 6666643  569


Q ss_pred             eEEEEcCceeeccCChH-------HHHHHHHhcccCC-cEEEEEec
Q 010086          170 DFVFVGGARLEKASKPL-------DFASEIVRTLKPE-GFAVVHVR  207 (518)
Q Consensus       170 D~V~s~~~~l~~~~dp~-------~~l~Ei~RVLKPG-G~lvi~~~  207 (518)
                      |+|+|--+  +..++|.       +++.-+.+.|++| |-+++-+-
T Consensus       162 D~ivcDig--eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl  205 (321)
T 3lkz_A          162 DTLLCDIG--ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVL  205 (321)
T ss_dssp             SEEEECCC--CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred             CEEEEECc--cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEc
Confidence            99999654  5555653       2555667888999 88777553

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.31  E-value=0.00018  Score=72.00  Aligned_cols=53  Identities=6%  Similarity=-0.041  Sum_probs=42.4

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCc----EEEEecCCC-----------CCcEEeccCCCCCCCC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVED----SIGIFKKSS-----------KPLVISGEGHRIPFDG  166 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~----v~gID~s~~-----------~~l~~~~da~~LPf~D  166 (518)
                      .+.++.+|||||||+|..+..|.+.+ ..    |+|+|+++.           ...++.+|+.++||++
T Consensus        39 ~~~~~~~VLEIG~G~G~lt~~La~~~-~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~  106 (279)
T 3uzu_A           39 RPERGERMVEIGPGLGALTGPVIARL-ATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS  106 (279)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHHHHH-CBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred             CCCCcCEEEEEccccHHHHHHHHHhC-CCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence            46788999999999999999888765 34    999999841           1235789999999865

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.29  E-value=0.00017  Score=75.14  Aligned_cols=86  Identities=14%  Similarity=0.129  Sum_probs=62.1

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------------------C---CcEEeccCCCCCC
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------------------K---PLVISGEGHRIPF  164 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------------------~---~l~~~~da~~LPf  164 (518)
                      ++.+|||+|||+|..+..++.. +...|+++|+++.                           .   ..++++|+..+..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            5789999999999998777664 5468999999741                           1   1234667655421


Q ss_pred             -CCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          165 -DGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       165 -~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                       ..+.||+|+..-  +.   .+..++..+.|.|||||+++++.
T Consensus       127 ~~~~~fD~I~lDP--~~---~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          127 ERHRYFHFIDLDP--FG---SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HSTTCEEEEEECC--SS---CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccCCCCEEEeCC--CC---CHHHHHHHHHHhcCCCCEEEEEe
Confidence             146899999643  21   24678999999999999887764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.22  E-value=0.0005  Score=77.24  Aligned_cols=106  Identities=7%  Similarity=-0.008  Sum_probs=68.3

Q ss_pred             HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcC-------------------------------------------C
Q 010086          103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIG-------------------------------------------V  139 (518)
Q Consensus       103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g-------------------------------------------~  139 (518)
                      .+...++.....+++..+||.+||+|.++...+..+                                           .
T Consensus       177 ~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~  256 (703)
T 3v97_A          177 TLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS  256 (703)
T ss_dssp             HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence            444445555456778899999999999875443321                                           1


Q ss_pred             CcEEEEecCCC----------------CCcEEeccCCCC--CCCCCceeEEEEcCc-eeeccCC--hH---HHHHHHHhc
Q 010086          140 EDSIGIFKKSS----------------KPLVISGEGHRI--PFDGNTFDFVFVGGA-RLEKASK--PL---DFASEIVRT  195 (518)
Q Consensus       140 ~~v~gID~s~~----------------~~l~~~~da~~L--Pf~D~SFD~V~s~~~-~l~~~~d--p~---~~l~Ei~RV  195 (518)
                      ..++|+|+++.                ...+.++|+.++  |+++++||+|+++-= ....-..  ..   +.+.++.|.
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~  336 (703)
T 3v97_A          257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN  336 (703)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred             ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence            37999999741                123568888887  555669999999731 0111111  12   335566666


Q ss_pred             ccCCcEEEEEecC
Q 010086          196 LKPEGFAVVHVRA  208 (518)
Q Consensus       196 LKPGG~lvi~~~~  208 (518)
                      ++|||.+++.++.
T Consensus       337 ~~~g~~~~ilt~~  349 (703)
T 3v97_A          337 QFGGWNLSLFSAS  349 (703)
T ss_dssp             HCTTCEEEEEESC
T ss_pred             hCCCCeEEEEeCC
Confidence            7789999888754

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.20  E-value=0.00017  Score=71.01  Aligned_cols=66  Identities=8%  Similarity=-0.158  Sum_probs=47.5

Q ss_pred             HHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCc--EEEEecCCC---------C----CcEEeccCCCCCCCCC-----
Q 010086          108 LISEGYLSQSAKSLCVETQYGQDVFALKEIGVED--SIGIFKKSS---------K----PLVISGEGHRIPFDGN-----  167 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~--v~gID~s~~---------~----~l~~~~da~~LPf~D~-----  167 (518)
                      +++...+.++.+|||||||+|..+. +++ + .+  |+|+|+++.         .    ..++++|+..++|++.     
T Consensus        13 iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~   89 (252)
T 1qyr_A           13 IVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMG   89 (252)
T ss_dssp             HHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHT
T ss_pred             HHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcccC
Confidence            3333346788999999999999999 765 4 46  999999731         1    2356899999887643     


Q ss_pred             ceeEEEEcC
Q 010086          168 TFDFVFVGG  176 (518)
Q Consensus       168 SFD~V~s~~  176 (518)
                      ..|.|+++.
T Consensus        90 ~~~~vvsNl   98 (252)
T 1qyr_A           90 QPLRVFGNL   98 (252)
T ss_dssp             SCEEEEEEC
T ss_pred             CceEEEECC
Confidence            356777765

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=97.17  E-value=0.00023  Score=74.61  Aligned_cols=87  Identities=16%  Similarity=0.110  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC--------------C---CcEEeccCCCC-C-CCCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS--------------K---PLVISGEGHRI-P-FDGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~--------------~---~l~~~~da~~L-P-f~D~SFD~V~  173 (518)
                      +++.+|||++||+|..+..++..  |...|+++|+++.              .   ..++.+|+.++ . -..+.||+|+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~  130 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD  130 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence            46789999999999998766653  4468999999741              1   23456676443 1 1246799999


Q ss_pred             EcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ..-  +   -.+..++..+.+.|||||+++++.
T Consensus       131 lDP--~---g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          131 LDP--F---GTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             ECC--S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECC--C---cCHHHHHHHHHHHhCCCCEEEEEe
Confidence            854  2   124568899999999999888765

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.04  E-value=0.0022  Score=69.89  Aligned_cols=131  Identities=11%  Similarity=0.069  Sum_probs=75.9

Q ss_pred             CeEEEEcCCCCHhHHHHHh----c----C--------CCcEEEEecCCC--------------CCcE--EeccCCCCC-C
Q 010086          118 AKSLCVETQYGQDVFALKE----I----G--------VEDSIGIFKKSS--------------KPLV--ISGEGHRIP-F  164 (518)
Q Consensus       118 ~rvLDVGcGtG~~~~~L~~----~----g--------~~~v~gID~s~~--------------~~l~--~~~da~~LP-f  164 (518)
                      .+|||.+||+|.++..+.+    .    +        ...++|+|+++.              ...+  .++|.-..| +
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~  325 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH  325 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence            4999999999988744321    1    0        247999998741              1112  456655444 6


Q ss_pred             CCCceeEEEEcCceeec-------------------------cC---Ch-HHHHHHHHhcccCCcEEEEEecCCCccC--
Q 010086          165 DGNTFDFVFVGGARLEK-------------------------AS---KP-LDFASEIVRTLKPEGFAVVHVRAKDEYS--  213 (518)
Q Consensus       165 ~D~SFD~V~s~~~~l~~-------------------------~~---dp-~~~l~Ei~RVLKPGG~lvi~~~~~~~~s--  213 (518)
                      ++..||+|+++-= +..                         .+   +. ..+++.+.+.|||||++++.+.+.-..+  
T Consensus       326 ~~~~fD~Iv~NPP-f~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~  404 (544)
T 3khk_A          326 PDLRADFVMTNPP-FNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNT  404 (544)
T ss_dssp             TTCCEEEEEECCC-SSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCG
T ss_pred             ccccccEEEECCC-cCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCc
Confidence            7889999999642 211                         11   00 1578999999999999888775432211  


Q ss_pred             --chhHhh-hccCccEEEEeccCC--C-CCCccceeEEEEeec
Q 010086          214 --FNSFLD-LFNSCKLVKSRDIDG--I-DSSLPYIREIVLKKE  250 (518)
Q Consensus       214 --~~~~~~-lf~~~~~v~~~~v~~--~-~~~~p~~~~vv~kK~  250 (518)
                        ...+++ |..++.+..+-....  | +-.+|+. .++++|.
T Consensus       405 ~~~~~iRk~Lle~~~l~aII~LP~~lF~~t~i~t~-Ilvl~K~  446 (544)
T 3khk_A          405 NNEGEIRKTLVEQDLVECMVALPGQLFTNTQIPAC-IWFLTKD  446 (544)
T ss_dssp             GGHHHHHHHHHHTTCEEEEEECCTTBCCSCSSCEE-EEEEESC
T ss_pred             chHHHHHHHHHhCCcHhEEEECCCCCCCCCCCCeE-EEEEecC
Confidence              123333 345555544433221  2 2234332 4666665

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=96.97  E-value=0.0011  Score=73.41  Aligned_cols=81  Identities=16%  Similarity=0.120  Sum_probs=56.0

Q ss_pred             CeEEEEcCCCCHhHHHH----HhcCC-CcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          118 AKSLCVETQYGQDVFAL----KEIGV-EDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       118 ~rvLDVGcGtG~~~~~L----~~~g~-~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      ..|||||||+|-++..-    ++.+. .+|++|+.++.               ...+++++.+++..| +.+|+|+|-- 
T Consensus       359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSEw-  436 (637)
T 4gqb_A          359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSEL-  436 (637)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECCC-
T ss_pred             cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEEc-
Confidence            46999999999885322    22221 26899998741               233678999998776 5799999854 


Q ss_pred             eeeccC----ChHHHHHHHHhcccCCcEE
Q 010086          178 RLEKAS----KPLDFASEIVRTLKPEGFA  202 (518)
Q Consensus       178 ~l~~~~----dp~~~l~Ei~RVLKPGG~l  202 (518)
                       +..+-    -| .++.-..|.|||||++
T Consensus       437 -MG~fLl~E~ml-evL~Ardr~LKPgGim  463 (637)
T 4gqb_A          437 -LGSFADNELSP-ECLDGAQHFLKDDGVS  463 (637)
T ss_dssp             -CBTTBGGGCHH-HHHHHHGGGEEEEEEE
T ss_pred             -CcccccccCCH-HHHHHHHHhcCCCcEE
Confidence             22211    13 4667778999999974

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=96.96  E-value=0.0008  Score=75.13  Aligned_cols=84  Identities=13%  Similarity=0.051  Sum_probs=58.6

Q ss_pred             CCeEEEEcCCCCHhHHH-H---HhcC----------CCcEEEEecCC---------------CCCcEEeccCCCCCCC--
Q 010086          117 SAKSLCVETQYGQDVFA-L---KEIG----------VEDSIGIFKKS---------------SKPLVISGEGHRIPFD--  165 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~-L---~~~g----------~~~v~gID~s~---------------~~~l~~~~da~~LPf~--  165 (518)
                      +..|||||||+|-++.. +   +..|          ..+|++||.++               ....+++++.+++.+|  
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence            34799999999998632 2   1122          13899999874               1244678999988774  


Q ss_pred             ---CCceeEEEEcCceeeccCC---hHHHHHHHHhcccCCcEE
Q 010086          166 ---GNTFDFVFVGGARLEKASK---PLDFASEIVRTLKPEGFA  202 (518)
Q Consensus       166 ---D~SFD~V~s~~~~l~~~~d---p~~~l~Ei~RVLKPGG~l  202 (518)
                         .+.+|+|+|-.  +-.+-+   -..++.-+.|.|||||++
T Consensus       490 ~~~~ekVDIIVSEl--mGsfl~nEL~pe~Ld~v~r~Lkp~Gi~  530 (745)
T 3ua3_A          490 DRGFEQPDIIVSEL--LGSFGDNELSPECLDGVTGFLKPTTIS  530 (745)
T ss_dssp             HTTCCCCSEEEECC--CBTTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred             cCCCCcccEEEEec--cccccchhccHHHHHHHHHhCCCCcEE
Confidence               67899999975  333321   124677778999999974

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=96.94  E-value=0.0034  Score=63.33  Aligned_cols=92  Identities=15%  Similarity=0.157  Sum_probs=66.4

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-------------------C-CcEEeccCCCC-CCCCCceeEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-------------------K-PLVISGEGHRI-PFDGNTFDFV  172 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-------------------~-~l~~~~da~~L-Pf~D~SFD~V  172 (518)
                      +...+||-||.|.|..+..+.+. +..+++.+|+.+.                   + ..++.+|+... --.+++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            44579999999999999777664 5678999998631                   1 12456776553 4467899999


Q ss_pred             EEcCceeeccC-----ChHHHHHHHHhcccCCcEEEEEecC
Q 010086          173 FVGGARLEKAS-----KPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       173 ~s~~~~l~~~~-----dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +.-.  .+-..     .-..+++.+.|.|||||+++.+.+.
T Consensus       162 i~D~--~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s  200 (294)
T 3o4f_A          162 ISDC--TDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV  200 (294)
T ss_dssp             EESC--CCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EEeC--CCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence            9854  22211     1236899999999999999998653

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=96.92  E-value=0.00048  Score=69.67  Aligned_cols=64  Identities=14%  Similarity=-0.037  Sum_probs=44.0

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC--------------CCcEEeccCCCCC--CC---CCceeEE
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS--------------KPLVISGEGHRIP--FD---GNTFDFV  172 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~--------------~~l~~~~da~~LP--f~---D~SFD~V  172 (518)
                      -++++.++||+|||+|..+..+.+. +...|+|+|+++.              ...++++|..++|  ++   .++||.|
T Consensus        23 ~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~V  102 (301)
T 1m6y_A           23 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGI  102 (301)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred             CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCEE
Confidence            3578899999999999999887765 2369999999741              1124566666654  12   1467777


Q ss_pred             EEcC
Q 010086          173 FVGG  176 (518)
Q Consensus       173 ~s~~  176 (518)
                      ++..
T Consensus       103 l~D~  106 (301)
T 1m6y_A          103 LMDL  106 (301)
T ss_dssp             EEEC
T ss_pred             EEcC
Confidence            7643

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=96.73  E-value=0.0041  Score=67.81  Aligned_cols=95  Identities=15%  Similarity=0.117  Sum_probs=64.5

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc----CCCcEEEEecCCC-----------------CCcEEeccCCCC--C-CCCCcee
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI----GVEDSIGIFKKSS-----------------KPLVISGEGHRI--P-FDGNTFD  170 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~----g~~~v~gID~s~~-----------------~~l~~~~da~~L--P-f~D~SFD  170 (518)
                      .++.+|||.+||+|.+...+.+.    +...++|+|+++.                 ...+.++|.-..  | +++..||
T Consensus       220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD  299 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD  299 (542)
T ss_dssp             CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred             CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence            46789999999999987544332    3468999998741                 112557777665  4 5678999


Q ss_pred             EEEEcCc-eeec------cCCh---------------HHHHHHHHhccc-CCcEEEEEecCC
Q 010086          171 FVFVGGA-RLEK------ASKP---------------LDFASEIVRTLK-PEGFAVVHVRAK  209 (518)
Q Consensus       171 ~V~s~~~-~l~~------~~dp---------------~~~l~Ei~RVLK-PGG~lvi~~~~~  209 (518)
                      +|+++-= .-.+      ..++               ..+++.+.+.|| |||++++.+.+.
T Consensus       300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence            9998731 0111      0010               137899999999 999998877543

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=96.68  E-value=0.015  Score=65.96  Aligned_cols=136  Identities=8%  Similarity=-0.054  Sum_probs=80.0

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc-C---CCcEEEEecCCCCC---------------------cEEeccCCCC-CCCCC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI-G---VEDSIGIFKKSSKP---------------------LVISGEGHRI-PFDGN  167 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~-g---~~~v~gID~s~~~~---------------------l~~~~da~~L-Pf~D~  167 (518)
                      .+++.+|||.|||+|.++.++++. +   ...++|+|+++...                     .+..++.... +.+..
T Consensus       319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~  398 (878)
T 3s1s_A          319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFA  398 (878)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGT
T ss_pred             CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccC
Confidence            346789999999999998776653 2   24799999875210                     1112233222 33567


Q ss_pred             ceeEEEEcCceeeccCC----------------------------hHHHHHHHHhcccCCcEEEEEecCCCcc--C--ch
Q 010086          168 TFDFVFVGGARLEKASK----------------------------PLDFASEIVRTLKPEGFAVVHVRAKDEY--S--FN  215 (518)
Q Consensus       168 SFD~V~s~~~~l~~~~d----------------------------p~~~l~Ei~RVLKPGG~lvi~~~~~~~~--s--~~  215 (518)
                      .||+|+++-=+......                            -..+++.+.+.|||||++++.+.+.-..  +  ..
T Consensus       399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~k  478 (878)
T 3s1s_A          399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESK  478 (878)
T ss_dssp             TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHH
T ss_pred             CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHH
Confidence            89999997521111111                            1236788999999999998887543221  1  13


Q ss_pred             hHhh-hccCccEEEEeccC---CCCC-CccceeEEEEeec
Q 010086          216 SFLD-LFNSCKLVKSRDID---GIDS-SLPYIREIVLKKE  250 (518)
Q Consensus       216 ~~~~-lf~~~~~v~~~~v~---~~~~-~~p~~~~vv~kK~  250 (518)
                      .+++ |..++.+..+-...   .|.. ..|+ ..++++|.
T Consensus       479 kLRk~LLe~~~I~aIIdLP~~~~F~~asv~T-~ILIlrK~  517 (878)
T 3s1s_A          479 AFREFLVGNFGLEHIFLYPREGLFEEVIKDT-VVFVGRKG  517 (878)
T ss_dssp             HHHHHHTTTTCEEEEEECCBCCSSCSCBCCE-EEEEEETT
T ss_pred             HHHHHHHhCCCeEEEEECCCccccCCCCCcE-EEEEEEcC
Confidence            3444 35666665554433   2532 2332 35667775

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=96.64  E-value=0.00034  Score=73.77  Aligned_cols=92  Identities=15%  Similarity=0.204  Sum_probs=60.3

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C---CcEEeccCCCC-CC-CCCceeEEE
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K---PLVISGEGHRI-PF-DGNTFDFVF  173 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~---~l~~~~da~~L-Pf-~D~SFD~V~  173 (518)
                      .+++|.+|||+|||+|..+..|++.+ .+|+|+|+++.              .   ..++++|+.+. +. ++++||+|+
T Consensus        90 ~l~~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~  168 (410)
T 3ll7_A           90 FIREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIY  168 (410)
T ss_dssp             GSCTTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred             hcCCCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEE
Confidence            35568999999999999999998876 79999999741              1   23567888763 43 457899999


Q ss_pred             EcCceeec-----cCChH---HHHHHHHhcccCC-cEEEEEe
Q 010086          174 VGGARLEK-----ASKPL---DFASEIVRTLKPE-GFAVVHV  206 (518)
Q Consensus       174 s~~~~l~~-----~~dp~---~~l~Ei~RVLKPG-G~lvi~~  206 (518)
                      +.-. ...     +-+++   --+.++.++|+.. ..+++-.
T Consensus       169 lDPP-rr~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~  209 (410)
T 3ll7_A          169 VDPA-RRSGADKRVYAIADCEPDLIPLATELLPFCSSILAKL  209 (410)
T ss_dssp             ECCE-EC-----CCCCGGGEESCHHHHHHHHGGGSSEEEEEE
T ss_pred             ECCC-CcCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEEc
Confidence            8532 111     00111   1356677766544 3455544

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=96.07  E-value=0.013  Score=55.96  Aligned_cols=82  Identities=10%  Similarity=0.021  Sum_probs=55.5

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC------------CC------CcEEeccCCC---------------C
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS------------SK------PLVISGEGHR---------------I  162 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~------------~~------~l~~~~da~~---------------L  162 (518)
                      +..+||++|||  ..+..+++...++|+.||.++            ..      ..++.+++.+               +
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            55799999986  555666664137999999863            11      1234566543               2


Q ss_pred             C--------C-CCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          163 P--------F-DGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       163 P--------f-~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |        . .+++||+||.-.. .     ....+.++.+.|||||++++-
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~-k-----~~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGR-F-----RVGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSS-S-----HHHHHHHHHHHCSSCEEEEET
T ss_pred             HHHhhhhhccccCCCCCEEEEeCC-C-----chhHHHHHHHhcCCCeEEEEe
Confidence            2        2 2478999999763 2     235677788999999999763

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=95.73  E-value=0.028  Score=56.26  Aligned_cols=105  Identities=11%  Similarity=0.111  Sum_probs=69.4

Q ss_pred             HHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHh----cC--CCcEEEEecCCC------------------
Q 010086           95 IKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKE----IG--VEDSIGIFKKSS------------------  150 (518)
Q Consensus        95 r~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~----~g--~~~v~gID~s~~------------------  150 (518)
                      .+....+..+++.+...+   ...+||++|+..|..+..+++    .|  ..+++++|..+.                  
T Consensus        88 ~~r~~~L~~l~~~v~~~~---~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~  164 (282)
T 2wk1_A           88 IKRLENIRQCVEDVIGNN---VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALH  164 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT---CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGG
T ss_pred             HHHHHHHHHHHHHHHhcC---CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccc
Confidence            334555566666655433   346899999999998766654    22  368999995310                  


Q ss_pred             -------------------------CCcEEeccCCC-CC-CCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEE
Q 010086          151 -------------------------KPLVISGEGHR-IP-FDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAV  203 (518)
Q Consensus       151 -------------------------~~l~~~~da~~-LP-f~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lv  203 (518)
                                               ...++.|++.+ || +++++||+|+.-..   +...-...+..+.+.|+|||+++
T Consensus       165 ~~~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~y~~~~~~Le~~~p~L~pGGiIv  241 (282)
T 2wk1_A          165 RRNSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---LYESTWDTLTNLYPKVSVGGYVI  241 (282)
T ss_dssp             GGHHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---SHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---ccccHHHHHHHHHhhcCCCEEEE
Confidence                                     01235666543 44 56789999998653   21222467899999999999998


Q ss_pred             EE
Q 010086          204 VH  205 (518)
Q Consensus       204 i~  205 (518)
                      +-
T Consensus       242 ~D  243 (282)
T 2wk1_A          242 VD  243 (282)
T ss_dssp             ES
T ss_pred             Ec
Confidence            85

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=95.61  E-value=0.01  Score=61.44  Aligned_cols=93  Identities=22%  Similarity=0.256  Sum_probs=62.9

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC---------------------CCcEEeccCCCCC-CCCCcee
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS---------------------KPLVISGEGHRIP-FDGNTFD  170 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~---------------------~~l~~~~da~~LP-f~D~SFD  170 (518)
                      .++|.+|||+++|+|.-+..+++.+ ...++++|+++.                     ...+...|+..++ +..+.||
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD  225 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD  225 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence            6789999999999999887887764 247999998731                     0113356666653 4568999


Q ss_pred             EEEE----cC---ceeeccC------Ch----------HHHHHHHHhcccCCcEEEEEe
Q 010086          171 FVFV----GG---ARLEKAS------KP----------LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       171 ~V~s----~~---~~l~~~~------dp----------~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .|+.    ++   ..++.-+      .+          .+.+..+.+.|||||+++-.+
T Consensus       226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT  284 (359)
T 4fzv_A          226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST  284 (359)
T ss_dssp             EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence            9994    32   1011101      11          245677889999999987764

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=95.13  E-value=0.02  Score=59.67  Aligned_cols=91  Identities=12%  Similarity=0.102  Sum_probs=60.2

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------CC--------------cEEeccCCCC----CCCCC
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------KP--------------LVISGEGHRI----PFDGN  167 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------~~--------------l~~~~da~~L----Pf~D~  167 (518)
                      .+..+||-||.|.|..+..+.+.+...++.+|+.+.         +.              .++.+|+...    +=.++
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            345799999999999998777666678999998631         10              1223443211    01245


Q ss_pred             ceeEEEEcCceeec--cCCh---------HHHHHHHHhcccCCcEEEEEec
Q 010086          168 TFDFVFVGGARLEK--ASKP---------LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       168 SFD~V~s~~~~l~~--~~dp---------~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      .||+|+.-.  ++.  ..+|         ..+++.+.|+|||||+++.+.+
T Consensus       284 ~yDvIIvDl--~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~  332 (381)
T 3c6k_A          284 EFDYVINDL--TAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN  332 (381)
T ss_dssp             CEEEEEEEC--CSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ceeEEEECC--CCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence            799999753  222  1122         2567889999999999998753

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.49  E-value=0.037  Score=55.14  Aligned_cols=46  Identities=13%  Similarity=0.035  Sum_probs=37.2

Q ss_pred             HHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC
Q 010086          102 SSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS  149 (518)
Q Consensus       102 ~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~  149 (518)
                      ..+++.++...- .+++.|||++||+|..+.++.+.| .+++|+|+++
T Consensus       222 ~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g-~~~~g~e~~~  267 (297)
T 2zig_A          222 LELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWG-RRALGVELVP  267 (297)
T ss_dssp             HHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTT-CEEEEEESCH
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCH
Confidence            356666665433 688999999999999998888888 6999999874

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=94.23  E-value=0.038  Score=70.11  Aligned_cols=90  Identities=21%  Similarity=0.164  Sum_probs=40.8

Q ss_pred             CCCCeEEEEcCCCCHhHHH-HHhcC-----CCcEEEEecCCCCC-----c-----EEec--cCCC-CCCCCCceeEEEEc
Q 010086          115 SQSAKSLCVETQYGQDVFA-LKEIG-----VEDSIGIFKKSSKP-----L-----VISG--EGHR-IPFDGNTFDFVFVG  175 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~-L~~~g-----~~~v~gID~s~~~~-----l-----~~~~--da~~-LPf~D~SFD~V~s~  175 (518)
                      .+..+||+||.|+|..+.. +..++     +.+.+-.|+|....     .     +..+  |... .+|..++||+|++.
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEE
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEc
Confidence            4567999999999976533 22222     23677788874211     0     1111  2222 25677889999999


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ++ +|-..+....++.+.+.|||||.+++.
T Consensus      1319 ~v-l~~t~~~~~~l~~~~~lL~p~G~l~~~ 1347 (2512)
T 2vz8_A         1319 CA-LATLGDPAVAVGNMAATLKEGGFLLLH 1347 (2512)
T ss_dssp             CC---------------------CCEEEEE
T ss_pred             cc-ccccccHHHHHHHHHHhcCCCcEEEEE
Confidence            97 877778888999999999999998775

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=93.11  E-value=0.21  Score=50.79  Aligned_cols=93  Identities=14%  Similarity=0.104  Sum_probs=59.4

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCC----C-CCCCCce
Q 010086          106 QDLISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHR----I-PFDGNTF  169 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~----L-Pf~D~SF  169 (518)
                      +.+.+..-++++.+||.+|+|. |..+..+++ .|...|+++|.++..         ..++.....+    + ...++.|
T Consensus       180 ~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~  259 (371)
T 1f8f_A          180 GACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGV  259 (371)
T ss_dssp             HHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred             HHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCC
Confidence            3344555678999999999987 776655554 675579999976421         1112111111    0 1112369


Q ss_pred             eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          170 DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |+|+....       ....+++..+.|||||.+++.
T Consensus       260 D~vid~~g-------~~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          260 NFALESTG-------SPEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             EEEEECSC-------CHHHHHHHHHTEEEEEEEEEC
T ss_pred             cEEEECCC-------CHHHHHHHHHHHhcCCEEEEe
Confidence            99997653       124678999999999998774

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=91.36  E-value=0.57  Score=47.76  Aligned_cols=89  Identities=12%  Similarity=0.094  Sum_probs=57.7

Q ss_pred             HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCC--------CCCCCCcee
Q 010086          110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHR--------IPFDGNTFD  170 (518)
Q Consensus       110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~--------LPf~D~SFD  170 (518)
                      ...-+++|.+||-+|+|. |..+..+++ .|...|+++|.++..         ..++.....+        ....++.||
T Consensus       176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~D  255 (370)
T 4ej6_A          176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVD  255 (370)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEE
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCC
Confidence            444578999999999976 666655554 675589999876311         1111110000        012234799


Q ss_pred             EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +|+....       -...++++.+.|+|||.+++.
T Consensus       256 vvid~~G-------~~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          256 VVIECAG-------VAETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             EEEECSC-------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCC-------CHHHHHHHHHHhccCCEEEEE
Confidence            9997653       134688999999999998775

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=91.05  E-value=0.24  Score=50.15  Aligned_cols=89  Identities=11%  Similarity=0.080  Sum_probs=56.2

Q ss_pred             HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEecc---CC----CC-CCCCCcee
Q 010086          110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGE---GH----RI-PFDGNTFD  170 (518)
Q Consensus       110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~d---a~----~L-Pf~D~SFD  170 (518)
                      ...-+++|.+||-+|+|. |..+..+++ .|..+|+++|.++..         ..++..+   ..    .+ ...+..||
T Consensus       165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D  244 (356)
T 1pl8_A          165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPE  244 (356)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCS
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCC
Confidence            344578999999999986 776655554 675589999976421         1111111   00    00 00014689


Q ss_pred             EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +|+....       -...+++..+.|+|||+++..
T Consensus       245 ~vid~~g-------~~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          245 VTIECTG-------AEASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             EEEECSC-------CHHHHHHHHHHSCTTCEEEEC
T ss_pred             EEEECCC-------ChHHHHHHHHHhcCCCEEEEE
Confidence            9997653       124578899999999998774

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=91.02  E-value=0.74  Score=49.77  Aligned_cols=135  Identities=16%  Similarity=0.140  Sum_probs=75.5

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHH----hcC----------CCcEEEEecCCC---------------CCcEEeccCCCCCC
Q 010086          114 LSQSAKSLCVETQYGQDVFALK----EIG----------VEDSIGIFKKSS---------------KPLVISGEGHRIPF  164 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~----~~g----------~~~v~gID~s~~---------------~~l~~~~da~~LPf  164 (518)
                      ..++.+|+|-+||+|.+.....    +.+          ...++|+|+.+.               .+.+..+|.-..|+
T Consensus       215 p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~  294 (530)
T 3ufb_A          215 PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPL  294 (530)
T ss_dssp             CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCG
T ss_pred             cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCch
Confidence            3567899999999999874332    111          135899998641               23344566554443


Q ss_pred             C----CCceeEEEEcCcee--ec-------c------CCh-HHHHHHHHhccc-------CCcEEEEEecCCCccCc---
Q 010086          165 D----GNTFDFVFVGGARL--EK-------A------SKP-LDFASEIVRTLK-------PEGFAVVHVRAKDEYSF---  214 (518)
Q Consensus       165 ~----D~SFD~V~s~~~~l--~~-------~------~dp-~~~l~Ei~RVLK-------PGG~lvi~~~~~~~~s~---  214 (518)
                      .    +..||+|+++-= |  .+       .      .+. ..+++.+.+.||       |||++++.+.++-.++.   
T Consensus       295 ~~~~~~~~fD~Il~NPP-f~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~  373 (530)
T 3ufb_A          295 REMGDKDRVDVILTNPP-FGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGIS  373 (530)
T ss_dssp             GGCCGGGCBSEEEECCC-SSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHH
T ss_pred             hhhcccccceEEEecCC-CCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchH
Confidence            2    457999999752 2  11       0      011 135678888887       79999888754322111   


Q ss_pred             hhHhh-hccCccEEEEecc--CCC-C-CCccceeEEEEeec
Q 010086          215 NSFLD-LFNSCKLVKSRDI--DGI-D-SSLPYIREIVLKKE  250 (518)
Q Consensus       215 ~~~~~-lf~~~~~v~~~~v--~~~-~-~~~p~~~~vv~kK~  250 (518)
                      ..+++ |..++.+..+-..  +.| . -.+|+. .++++|+
T Consensus       374 ~~iRk~Lle~~~l~aII~LP~~~F~~~tgi~t~-Il~~~K~  413 (530)
T 3ufb_A          374 ARIKEELLKNFNLHTIVRLPEGVFAPYTDIAGN-LLFFDRS  413 (530)
T ss_dssp             HHHHHHHHHHSEEEEEEECCTTTTTTTCCCCEE-EEEEESS
T ss_pred             HHHHHHHhhcCEEEEEEECCcccCcCCCCCcEE-EEEEECC
Confidence            12322 3455655554332  113 2 124443 4667765

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=90.84  E-value=0.35  Score=49.26  Aligned_cols=94  Identities=11%  Similarity=0.070  Sum_probs=59.0

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCCC---------cEEeccC--CCC-----CCCC
Q 010086          105 FQDLISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSKP---------LVISGEG--HRI-----PFDG  166 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~~---------l~~~~da--~~L-----Pf~D  166 (518)
                      ++.+....-+++|++||-+|+|. |..+..+++ .|..+|+++|.++...         .++....  .++     ...+
T Consensus       184 ~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~  263 (376)
T 1e3i_A          184 YGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTA  263 (376)
T ss_dssp             HHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHT
T ss_pred             HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhC
Confidence            33444556688999999999876 666655554 6755899999764211         1111110  000     0112


Q ss_pred             CceeEEEEcCceeeccCChHHHHHHHHhcccCC-cEEEEE
Q 010086          167 NTFDFVFVGGARLEKASKPLDFASEIVRTLKPE-GFAVVH  205 (518)
Q Consensus       167 ~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPG-G~lvi~  205 (518)
                      +.+|+|+....       -...+++..+.|+|| |.+++.
T Consensus       264 ~g~Dvvid~~G-------~~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          264 GGVDYSLDCAG-------TAQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             SCBSEEEESSC-------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCccEEEECCC-------CHHHHHHHHHHhhcCCCEEEEE
Confidence            36999997653       124678999999999 998764

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=90.76  E-value=0.27  Score=50.21  Aligned_cols=93  Identities=14%  Similarity=0.130  Sum_probs=59.9

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEecc--CCCC-----CCCCC
Q 010086          106 QDLISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGE--GHRI-----PFDGN  167 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~d--a~~L-----Pf~D~  167 (518)
                      +.+.....++++.+||-+|+|. |..+..+++ .|..+|+++|.++..         ..++...  ..++     ...++
T Consensus       183 ~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~g  262 (378)
T 3uko_A          183 GAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDG  262 (378)
T ss_dssp             HHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTS
T ss_pred             HHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCC
Confidence            3355566788999999999976 666655554 675589999977531         1111111  0100     01233


Q ss_pred             ceeEEEEcCceeeccCChHHHHHHHHhcccCC-cEEEEE
Q 010086          168 TFDFVFVGGARLEKASKPLDFASEIVRTLKPE-GFAVVH  205 (518)
Q Consensus       168 SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPG-G~lvi~  205 (518)
                      .||+|+....       -...+.+..+.|+|| |++++.
T Consensus       263 g~D~vid~~g-------~~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          263 GVDYSFECIG-------NVSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             CBSEEEECSC-------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCEEEECCC-------CHHHHHHHHHHhhccCCEEEEE
Confidence            6999997653       124678999999997 998775

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=90.41  E-value=0.098  Score=52.04  Aligned_cols=54  Identities=19%  Similarity=0.238  Sum_probs=36.2

Q ss_pred             EEeccCCC-CC-CCCCceeEEEEcCceeec-------------------cCChHHHHHHHHhcccCCcEEEEEec
Q 010086          154 VISGEGHR-IP-FDGNTFDFVFVGGARLEK-------------------ASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       154 ~~~~da~~-LP-f~D~SFD~V~s~~~~l~~-------------------~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++++|..+ ++ +++++||+|++.-=+...                   +......++|+.|+|||||.+++.++
T Consensus        24 i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           24 LHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             EEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            45677655 33 578899999987521111                   00123467899999999999988765

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=90.20  E-value=0.31  Score=49.54  Aligned_cols=93  Identities=11%  Similarity=0.112  Sum_probs=58.9

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccC--CCC-----CCCCC
Q 010086          106 QDLISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEG--HRI-----PFDGN  167 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da--~~L-----Pf~D~  167 (518)
                      +.+....-+++|++||-+|+|. |..+..+++ .|..+|+++|.++..         ..++....  .++     ...++
T Consensus       181 ~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~g  260 (373)
T 1p0f_A          181 GAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNG  260 (373)
T ss_dssp             HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             HHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCC
Confidence            3344556688999999999876 666655554 675589999976421         11111110  000     01123


Q ss_pred             ceeEEEEcCceeeccCChHHHHHHHHhcccCC-cEEEEE
Q 010086          168 TFDFVFVGGARLEKASKPLDFASEIVRTLKPE-GFAVVH  205 (518)
Q Consensus       168 SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPG-G~lvi~  205 (518)
                      .||+|+....       -...+++..+.|+|| |.+++.
T Consensus       261 g~Dvvid~~g-------~~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          261 GVDYAVECAG-------RIETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             CBSEEEECSC-------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCEEEECCC-------CHHHHHHHHHHHhcCCCEEEEE
Confidence            6999997653       124678999999999 998764

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=90.19  E-value=0.64  Score=47.77  Aligned_cols=99  Identities=10%  Similarity=0.017  Sum_probs=60.6

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC--------CcEEeccCCCC------CC-CCC
Q 010086          105 FQDLISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK--------PLVISGEGHRI------PF-DGN  167 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~--------~l~~~~da~~L------Pf-~D~  167 (518)
                      ++-+ ...-+++|++||.+|+|. |..+..+++ .|..+|+++|.++..        ..++.....+.      .. +..
T Consensus       175 ~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~  253 (398)
T 2dph_A          175 FHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKP  253 (398)
T ss_dssp             HHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSS
T ss_pred             HHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCC
Confidence            3344 445678999999999987 777655554 675589999976321        11121111110      00 122


Q ss_pred             ceeEEEEcCceeecc--------CChHHHHHHHHhcccCCcEEEEE
Q 010086          168 TFDFVFVGGARLEKA--------SKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       168 SFD~V~s~~~~l~~~--------~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .||+|+.... -...        ..+...++++.+.|||||++++.
T Consensus       254 g~Dvvid~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          254 EVDCGVDAVG-FEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             CEEEEEECSC-TTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             CCCEEEECCC-CccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence            6999997653 2110        01335789999999999998764

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=90.16  E-value=0.33  Score=49.36  Aligned_cols=92  Identities=10%  Similarity=0.083  Sum_probs=58.0

Q ss_pred             HHHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCCC---------cEEeccC--CCC-----CCCCCc
Q 010086          107 DLISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSKP---------LVISGEG--HRI-----PFDGNT  168 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~~---------l~~~~da--~~L-----Pf~D~S  168 (518)
                      .+....-+++|++||-+|+|. |..+..+++ .|..+|+++|.++...         .++....  .++     ...++.
T Consensus       183 ~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g  262 (374)
T 1cdo_A          183 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGG  262 (374)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             HHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCC
Confidence            344556678999999999876 666655554 6755899999764211         1111110  000     011236


Q ss_pred             eeEEEEcCceeeccCChHHHHHHHHhcccCC-cEEEEE
Q 010086          169 FDFVFVGGARLEKASKPLDFASEIVRTLKPE-GFAVVH  205 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPG-G~lvi~  205 (518)
                      +|+|+....       ....+++..+.|||| |.+++.
T Consensus       263 ~D~vid~~g-------~~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          263 VDFSLECVG-------NVGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             BSEEEECSC-------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCEEEECCC-------CHHHHHHHHHHhhcCCcEEEEE
Confidence            999997653       124678999999999 998764

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=90.05  E-value=0.22  Score=49.92  Aligned_cols=43  Identities=12%  Similarity=0.034  Sum_probs=33.8

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC
Q 010086          106 QDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS  149 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~  149 (518)
                      +++++.-.+++++.+||.+||.|..+..+.+.+ ..|+|+|.++
T Consensus        12 ~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp   54 (285)
T 1wg8_A           12 QEALDLLAVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDP   54 (285)
T ss_dssp             HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCH
T ss_pred             HHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCH
Confidence            333433346789999999999999998887764 6999999864

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=90.03  E-value=0.22  Score=51.15  Aligned_cols=94  Identities=10%  Similarity=0.026  Sum_probs=60.1

Q ss_pred             cCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC--------CcEEeccCCC-----C-CC-CCCceeEEE
Q 010086          111 EGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK--------PLVISGEGHR-----I-PF-DGNTFDFVF  173 (518)
Q Consensus       111 ~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~--------~l~~~~da~~-----L-Pf-~D~SFD~V~  173 (518)
                      ..-+++|.+||-+|+|. |..+..+++ .|...|+++|.++..        ...+.....+     + .. ....+|+|+
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvi  259 (398)
T 1kol_A          180 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAV  259 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred             HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEE
Confidence            44578999999999887 777766655 675579999976421        1111111100     0 00 123699999


Q ss_pred             EcCcee---------eccCChHHHHHHHHhcccCCcEEEEE
Q 010086          174 VGGARL---------EKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       174 s~~~~l---------~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .... -         .|.+++...+++..+.|||||.+++.
T Consensus       260 d~~G-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          260 DAVG-FEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             ECCC-TTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             ECCC-CcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence            7653 1         13345556889999999999998764

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=89.76  E-value=0.31  Score=47.36  Aligned_cols=45  Identities=16%  Similarity=0.201  Sum_probs=36.8

Q ss_pred             HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC
Q 010086          103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS  149 (518)
Q Consensus       103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~  149 (518)
                      .+++.++... ..+++.|||..||+|..+.+..+.| .+++|+|+++
T Consensus       200 ~l~~~~i~~~-~~~~~~vlD~f~GsGtt~~~a~~~g-r~~ig~e~~~  244 (260)
T 1g60_A          200 DLIERIIRAS-SNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNA  244 (260)
T ss_dssp             HHHHHHHHHH-CCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCH
T ss_pred             HHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCH
Confidence            5666666553 4789999999999999998888888 7999999864

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=89.73  E-value=0.64  Score=46.75  Aligned_cols=81  Identities=10%  Similarity=0.060  Sum_probs=55.5

Q ss_pred             CCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCCC---------cEEeccCCCCCCCCCceeEEEEcCceeec
Q 010086          113 YLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSKP---------LVISGEGHRIPFDGNTFDFVFVGGARLEK  181 (518)
Q Consensus       113 ll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~~---------l~~~~da~~LPf~D~SFD~V~s~~~~l~~  181 (518)
                      -+++|++||-+|+|. |..+..+++ .| .+|++++.++...         .++ .+...  +.. .+|+|+.... -. 
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~lGa~~v~-~~~~~--~~~-~~D~vid~~g-~~-  245 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMG-AEVSVFARNEHKKQDALSMGVKHFY-TDPKQ--CKE-ELDFIISTIP-TH-  245 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTT-CEEEEECSSSTTHHHHHHTTCSEEE-SSGGG--CCS-CEEEEEECCC-SC-
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHhcCCCeec-CCHHH--Hhc-CCCEEEECCC-cH-
Confidence            578999999999986 776655554 57 5899999875321         122 22222  222 7999997653 11 


Q ss_pred             cCChHHHHHHHHhcccCCcEEEEE
Q 010086          182 ASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       182 ~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                           ..+++..+.|+|||.+++.
T Consensus       246 -----~~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          246 -----YDLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             -----CCHHHHHTTEEEEEEEEEC
T ss_pred             -----HHHHHHHHHHhcCCEEEEE
Confidence                 2477889999999998875

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=89.47  E-value=0.36  Score=49.06  Aligned_cols=93  Identities=15%  Similarity=0.135  Sum_probs=58.7

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCCC---------cEEeccC--CCC-----CCCCC
Q 010086          106 QDLISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSKP---------LVISGEG--HRI-----PFDGN  167 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~~---------l~~~~da--~~L-----Pf~D~  167 (518)
                      +.+....-+++|++||-+|+|. |..+..+++ .|..+|+++|.++...         .++....  .++     ...++
T Consensus       180 ~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~  259 (373)
T 2fzw_A          180 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDG  259 (373)
T ss_dssp             HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             HHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCC
Confidence            3344556678999999999876 666655544 6755899999764211         1111110  000     01123


Q ss_pred             ceeEEEEcCceeeccCChHHHHHHHHhcccCC-cEEEEE
Q 010086          168 TFDFVFVGGARLEKASKPLDFASEIVRTLKPE-GFAVVH  205 (518)
Q Consensus       168 SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPG-G~lvi~  205 (518)
                      .+|+|+....       ....+++..+.|+|| |.+++.
T Consensus       260 g~D~vid~~g-------~~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          260 GVDYSFECIG-------NVKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             CBSEEEECSC-------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCEEEECCC-------cHHHHHHHHHhhccCCcEEEEE
Confidence            6999997653       124678999999999 998764

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=89.18  E-value=0.42  Score=48.62  Aligned_cols=93  Identities=16%  Similarity=0.171  Sum_probs=58.5

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccC--CCC-----CCCCC
Q 010086          106 QDLISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEG--HRI-----PFDGN  167 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da--~~L-----Pf~D~  167 (518)
                      +.+....-++++++||-+|+|. |..+..+++ .|..+|+++|.++..         ..++....  .++     ...++
T Consensus       181 ~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~  260 (374)
T 2jhf_A          181 GSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNG  260 (374)
T ss_dssp             HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             HHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCC
Confidence            3344556678999999999876 666655554 674489999976421         11111110  000     01123


Q ss_pred             ceeEEEEcCceeeccCChHHHHHHHHhcccCC-cEEEEE
Q 010086          168 TFDFVFVGGARLEKASKPLDFASEIVRTLKPE-GFAVVH  205 (518)
Q Consensus       168 SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPG-G~lvi~  205 (518)
                      .+|+|+....       ....+++..+.|||| |.+++.
T Consensus       261 g~D~vid~~g-------~~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          261 GVDFSFEVIG-------RLDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             CBSEEEECSC-------CHHHHHHHHHHBCTTTCEEEEC
T ss_pred             CCcEEEECCC-------CHHHHHHHHHHhhcCCcEEEEe
Confidence            6999997653       124678899999999 998764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=89.14  E-value=0.33  Score=49.08  Aligned_cols=89  Identities=12%  Similarity=0.010  Sum_probs=56.2

Q ss_pred             HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCCC--------cEE--ecc---CCC----C--CCCCCc
Q 010086          110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSKP--------LVI--SGE---GHR----I--PFDGNT  168 (518)
Q Consensus       110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~~--------l~~--~~d---a~~----L--Pf~D~S  168 (518)
                      ....+++|.+||-+|+|. |..+..+++ .|...|+++|.++...        .++  ..+   ..+    +  -.....
T Consensus       173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g  252 (363)
T 3m6i_A          173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIE  252 (363)
T ss_dssp             HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCC
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCC
Confidence            445578999999999976 676655554 6755699999764210        000  000   000    0  012346


Q ss_pred             eeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          169 FDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +|+|+....       -...+++..+.|+|||.+++.
T Consensus       253 ~Dvvid~~g-------~~~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          253 PAVALECTG-------VESSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             CSEEEECSC-------CHHHHHHHHHHSCTTCEEEEC
T ss_pred             CCEEEECCC-------ChHHHHHHHHHhcCCCEEEEE
Confidence            899987653       124678899999999998875

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=88.79  E-value=0.81  Score=46.29  Aligned_cols=86  Identities=24%  Similarity=0.287  Sum_probs=55.8

Q ss_pred             CCeEEEEcCCCCHhHH-HH---HhcC-C--CcEEEEecCCC------CC-----------------------cEEeccCC
Q 010086          117 SAKSLCVETQYGQDVF-AL---KEIG-V--EDSIGIFKKSS------KP-----------------------LVISGEGH  160 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~-~L---~~~g-~--~~v~gID~s~~------~~-----------------------l~~~~da~  160 (518)
                      .-+|||+|-|||..+. .+   .+.+ .  -+.+.++..+-      +.                       .+..||+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            3479999999998652 22   2222 1  24567775320      00                       01246664


Q ss_pred             C-CC-CCCCceeEEEEcCceeeccCChH----HHHHHHHhcccCCcEEEE
Q 010086          161 R-IP-FDGNTFDFVFVGGARLEKASKPL----DFASEIVRTLKPEGFAVV  204 (518)
Q Consensus       161 ~-LP-f~D~SFD~V~s~~~~l~~~~dp~----~~l~Ei~RVLKPGG~lvi  204 (518)
                      + +| +++..||+|+--.  |.=-.+|+    .+++.|+|.++|||+++-
T Consensus       177 ~~l~~l~~~~~Da~flDg--FsP~kNPeLWs~e~f~~l~~~~~pgg~laT  224 (308)
T 3vyw_A          177 KRIKEVENFKADAVFHDA--FSPYKNPELWTLDFLSLIKERIDEKGYWVS  224 (308)
T ss_dssp             HHGGGCCSCCEEEEEECC--SCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHhhhcccceeEEEeCC--CCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            3 33 4566899999854  65555774    789999999999998874

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=88.68  E-value=0.81  Score=46.49  Aligned_cols=89  Identities=17%  Similarity=0.113  Sum_probs=58.0

Q ss_pred             HHHcCCCC-----CCCeEEEEc-CCC-CHhHHHHHhc-CCCcEEEEecCCCC---------CcEEec------cCCCCCC
Q 010086          108 LISEGYLS-----QSAKSLCVE-TQY-GQDVFALKEI-GVEDSIGIFKKSSK---------PLVISG------EGHRIPF  164 (518)
Q Consensus       108 L~~~gll~-----~~~rvLDVG-cGt-G~~~~~L~~~-g~~~v~gID~s~~~---------~l~~~~------da~~LPf  164 (518)
                      |.+..-++     +|.+||-+| +|. |..+..+++. +..+|++++.++..         ..++..      ...+  .
T Consensus       158 l~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~--~  235 (363)
T 4dvj_A          158 FFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAA--L  235 (363)
T ss_dssp             HHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHT--T
T ss_pred             HHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH--h
Confidence            44445566     788999999 665 7777777664 44799999976310         111110      1111  1


Q ss_pred             CCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          165 DGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       165 ~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ..+.+|+|+....       -...++++.+.|+|||.+++.
T Consensus       236 ~~~g~Dvvid~~g-------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          236 GLGAPAFVFSTTH-------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             CSCCEEEEEECSC-------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             cCCCceEEEECCC-------chhhHHHHHHHhcCCCEEEEE
Confidence            3457999997653       234678999999999998875

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=88.46  E-value=0.62  Score=46.10  Aligned_cols=88  Identities=15%  Similarity=0.116  Sum_probs=56.8

Q ss_pred             HHHHHHHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCCCc---------EEeccCCCCCCCCCceeE
Q 010086          103 SVFQDLISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSKPL---------VISGEGHRIPFDGNTFDF  171 (518)
Q Consensus       103 ~l~~~L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~~l---------~~~~da~~LPf~D~SFD~  171 (518)
                      ..++-| ...-+++|.+||-.|+|. |..+..+++ .|. +|++++ ++....         ++. |.+++   ...+|+
T Consensus       130 ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~-d~~~v---~~g~Dv  202 (315)
T 3goh_A          130 TAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLYR-EPSQV---TQKYFA  202 (315)
T ss_dssp             HHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEES-SGGGC---CSCEEE
T ss_pred             HHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEEc-CHHHh---CCCccE
Confidence            334445 566788999999999975 776655554 674 999999 653211         121 23344   567999


Q ss_pred             EEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |+.... -       ..+.+..+.|+|||+++..
T Consensus       203 v~d~~g-~-------~~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          203 IFDAVN-S-------QNAAALVPSLKANGHIICI  228 (315)
T ss_dssp             EECC---------------TTGGGEEEEEEEEEE
T ss_pred             EEECCC-c-------hhHHHHHHHhcCCCEEEEE
Confidence            997543 1       1235678999999998876

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=88.31  E-value=0.94  Score=45.56  Aligned_cols=89  Identities=15%  Similarity=0.107  Sum_probs=57.4

Q ss_pred             HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCC-----C-CCCCceeEE
Q 010086          110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRI-----P-FDGNTFDFV  172 (518)
Q Consensus       110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~L-----P-f~D~SFD~V  172 (518)
                      +..-+++|++||-+|+|. |..+..+++ .|..+|+++|.++..         ..++.....++     . .....||+|
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v  239 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKV  239 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEE
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEE
Confidence            455678999999999987 776655555 575589999976421         11111111100     0 122369999


Q ss_pred             EEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          173 FVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       173 ~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +.... -      ...+++..+.|+|||.++..
T Consensus       240 ~d~~g-~------~~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          240 VIAGG-D------VHTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             EECSS-C------TTHHHHHHHHEEEEEEEEEC
T ss_pred             EECCC-C------hHHHHHHHHHHhcCCEEEEe
Confidence            97653 1      14588899999999998775

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=88.30  E-value=0.45  Score=47.63  Aligned_cols=88  Identities=8%  Similarity=0.023  Sum_probs=56.0

Q ss_pred             HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCCC--C--CCCceeEEEE
Q 010086          110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRIP--F--DGNTFDFVFV  174 (518)
Q Consensus       110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~LP--f--~D~SFD~V~s  174 (518)
                      ....+++|++||-.|+|. |..+..+++ .| .+|+++|.++..         ..++.....++.  .  ..+.+|.|+.
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid  238 (340)
T 3s2e_A          160 KVTDTRPGQWVVISGIGGLGHVAVQYARAMG-LRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLV  238 (340)
T ss_dssp             HTTTCCTTSEEEEECCSTTHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEE
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEE
Confidence            445678999999999986 777755554 67 499999976421         111111110000  0  0125898887


Q ss_pred             cCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          175 GGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ...       -...+++..+.|+|||.+++.
T Consensus       239 ~~g-------~~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          239 TAV-------SPKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             SSC-------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             eCC-------CHHHHHHHHHHhccCCEEEEe
Confidence            542       135688899999999998775

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=87.77  E-value=0.26  Score=49.68  Aligned_cols=54  Identities=22%  Similarity=0.334  Sum_probs=37.5

Q ss_pred             EEeccCCC-CC-CCCCceeEEEEcCceeec-------------cCChHHHHHHHHhcccCCcEEEEEec
Q 010086          154 VISGEGHR-IP-FDGNTFDFVFVGGARLEK-------------ASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       154 ~~~~da~~-LP-f~D~SFD~V~s~~~~l~~-------------~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++.+|+.+ |+ +++++||+|++.-=+...             .......+.|+.|+|||||.+++...
T Consensus        17 ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~   85 (323)
T 1boo_A           17 MYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG   85 (323)
T ss_dssp             EEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence            45677653 43 678999999987420110             11245788999999999999999865

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=87.35  E-value=2  Score=43.22  Aligned_cols=85  Identities=19%  Similarity=0.303  Sum_probs=55.1

Q ss_pred             CCCCC------CeEEEEcCCC-CHhH-HHHH-h-cCCCcEEEEecCCC---CCc-E------EeccCCCCCCC-----CC
Q 010086          113 YLSQS------AKSLCVETQY-GQDV-FALK-E-IGVEDSIGIFKKSS---KPL-V------ISGEGHRIPFD-----GN  167 (518)
Q Consensus       113 ll~~~------~rvLDVGcGt-G~~~-~~L~-~-~g~~~v~gID~s~~---~~l-~------~~~da~~LPf~-----D~  167 (518)
                      -+++|      .+||-+|+|. |..+ ..++ + .|..+|+++|.++.   ... .      .. +..+-.+.     ++
T Consensus       163 ~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v-~~~~~~~~~i~~~~g  241 (357)
T 2b5w_A          163 YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV-DSRQTPVEDVPDVYE  241 (357)
T ss_dssp             HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE-ETTTSCGGGHHHHSC
T ss_pred             CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc-CCCccCHHHHHHhCC
Confidence            35678      9999999976 7766 6666 5 56444999998754   111 0      11 22211111     13


Q ss_pred             ceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          168 TFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       168 SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .||+|+....       -...++++.+.|+|||+++..
T Consensus       242 g~Dvvid~~g-------~~~~~~~~~~~l~~~G~iv~~  272 (357)
T 2b5w_A          242 QMDFIYEATG-------FPKHAIQSVQALAPNGVGALL  272 (357)
T ss_dssp             CEEEEEECSC-------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCEEEECCC-------ChHHHHHHHHHHhcCCEEEEE
Confidence            6999997653       124578999999999998775

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=86.76  E-value=1.6  Score=39.77  Aligned_cols=88  Identities=23%  Similarity=0.194  Sum_probs=54.0

Q ss_pred             HHHcCCCCCCCeEEEEcCCC--CHhH-HHHHhcCCCcEEEEecCCCC--------CcEEeccCCCCC--------CCCCc
Q 010086          108 LISEGYLSQSAKSLCVETQY--GQDV-FALKEIGVEDSIGIFKKSSK--------PLVISGEGHRIP--------FDGNT  168 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGt--G~~~-~~L~~~g~~~v~gID~s~~~--------~l~~~~da~~LP--------f~D~S  168 (518)
                      +.+.+-++++.+||..|++.  |..+ ..++..| .+|+++|.++..        ...+ .|..+-.        .....
T Consensus        30 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~  107 (198)
T 1pqw_A           30 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRLGVEYV-GDSRSVDFADEILELTDGYG  107 (198)
T ss_dssp             HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTTCCSEE-EETTCSTHHHHHHHHTTTCC
T ss_pred             HHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHcCCCEE-eeCCcHHHHHHHHHHhCCCC
Confidence            43445678999999999533  5544 4444567 589999976310        0011 1111100        11236


Q ss_pred             eeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          169 FDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +|+|+....        ...+++..+.|||||++++.
T Consensus       108 ~D~vi~~~g--------~~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A          108 VDVVLNSLA--------GEAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             EEEEEECCC--------THHHHHHHHTEEEEEEEEEC
T ss_pred             CeEEEECCc--------hHHHHHHHHHhccCCEEEEE
Confidence            999997542        14578899999999988774

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=86.16  E-value=0.96  Score=45.49  Aligned_cols=88  Identities=6%  Similarity=0.017  Sum_probs=55.1

Q ss_pred             HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccC-CCCC------CC---CCc
Q 010086          110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEG-HRIP------FD---GNT  168 (518)
Q Consensus       110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da-~~LP------f~---D~S  168 (518)
                      ...-+++|.+||-+|+|. |..+..+++ .| .+|+++|.++..         ..++..+. .+..      .+   ...
T Consensus       162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g  240 (352)
T 1e3j_A          162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDL  240 (352)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCC
Confidence            344578999999999876 666655544 67 459999976321         11111110 1110      01   246


Q ss_pred             eeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          169 FDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ||+|+....       ....+++..+.|+|||.++..
T Consensus       241 ~D~vid~~g-------~~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          241 PNVTIDCSG-------NEKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             CSEEEECSC-------CHHHHHHHHHHSCTTCEEEEC
T ss_pred             CCEEEECCC-------CHHHHHHHHHHHhcCCEEEEE
Confidence            999997653       124578899999999998774

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=85.05  E-value=0.44  Score=47.78  Aligned_cols=93  Identities=9%  Similarity=0.095  Sum_probs=58.8

Q ss_pred             HHHHHH-cCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCC-----CC-CC
Q 010086          105 FQDLIS-EGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRI-----PF-DG  166 (518)
Q Consensus       105 ~~~L~~-~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~L-----Pf-~D  166 (518)
                      ++-+.. .+.++++++||-+|+|. |..+..+++ .|..+|+++|.++..         ..++..+. ++     .. ..
T Consensus       159 ~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~-~~~~~v~~~t~g  237 (345)
T 3jv7_A          159 YHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGA-GAADAIRELTGG  237 (345)
T ss_dssp             HHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECST-THHHHHHHHHGG
T ss_pred             HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCC-cHHHHHHHHhCC
Confidence            334444 33578999999999976 776666654 555799999976421         11111110 00     00 11


Q ss_pred             CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          167 NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       167 ~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ..+|+|+....       -...+++..+.|+|||.+++.
T Consensus       238 ~g~d~v~d~~G-------~~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          238 QGATAVFDFVG-------AQSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             GCEEEEEESSC-------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCeEEEECCC-------CHHHHHHHHHHHhcCCEEEEE
Confidence            26999987653       124688999999999998775

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=84.52  E-value=1.1  Score=44.96  Aligned_cols=92  Identities=10%  Similarity=-0.007  Sum_probs=55.0

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC-----CcE-EeccCCCCCCC-------CCcee
Q 010086          106 QDLISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK-----PLV-ISGEGHRIPFD-------GNTFD  170 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~-----~l~-~~~da~~LPf~-------D~SFD  170 (518)
                      +-+....-+ +|.+||-+|+|. |..+..+++ .|..+|++++.++..     .+. ..-+..+-.+.       ...+|
T Consensus       155 ~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~~~g~D  233 (343)
T 2dq4_A          155 HTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVE  233 (343)
T ss_dssp             HHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHHSSCEE
T ss_pred             HHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhcCCCCC
Confidence            334324445 899999999965 666655544 674489999976311     010 00011110000       23589


Q ss_pred             EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +|+....       ....+++..+.|+|||.++..
T Consensus       234 ~vid~~g-------~~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          234 VLLEFSG-------NEAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             EEEECSC-------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCC-------CHHHHHHHHHHHhcCCEEEEE
Confidence            9987653       124578899999999987764

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=84.48  E-value=1.2  Score=45.78  Aligned_cols=87  Identities=10%  Similarity=0.049  Sum_probs=52.5

Q ss_pred             CCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCC-----C-CCCCceeEEEEc
Q 010086          113 YLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRI-----P-FDGNTFDFVFVG  175 (518)
Q Consensus       113 ll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~L-----P-f~D~SFD~V~s~  175 (518)
                      .+++|++||-+|+|. |..+..+++ .|...|+++|.++..         ..++.....++     . .....+|+|+..
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~  289 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEA  289 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEEC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEEC
Confidence            578999999999976 666655554 675589999976421         11111111100     0 112369999976


Q ss_pred             CceeeccCChHHHHHHHHhcc----cCCcEEEEE
Q 010086          176 GARLEKASKPLDFASEIVRTL----KPEGFAVVH  205 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVL----KPGG~lvi~  205 (518)
                      ..      .+...+..+.+.|    +|||.+++.
T Consensus       290 ~g------~~~~~~~~~~~~l~~~~~~~G~iv~~  317 (404)
T 3ip1_A          290 TG------VPQLVWPQIEEVIWRARGINATVAIV  317 (404)
T ss_dssp             SS------CHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred             CC------CcHHHHHHHHHHHHhccCCCcEEEEe
Confidence            53      2333445555555    999998875

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=84.03  E-value=0.52  Score=48.16  Aligned_cols=88  Identities=18%  Similarity=0.132  Sum_probs=54.9

Q ss_pred             cCC-CCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEecc---CC----CC-CC-CCCce
Q 010086          111 EGY-LSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGE---GH----RI-PF-DGNTF  169 (518)
Q Consensus       111 ~gl-l~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~d---a~----~L-Pf-~D~SF  169 (518)
                      ..- +++|.+||-+|+|. |..+..+++ .|..+|++++.++..         ..++...   ..    .+ .. +...+
T Consensus       189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~  268 (380)
T 1vj0_A          189 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGA  268 (380)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCE
T ss_pred             hcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCC
Confidence            345 78899999999776 666655554 564589999976321         1111111   00    00 01 12369


Q ss_pred             eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          170 DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |+|+.... -      ...+++..+.|+|||.++..
T Consensus       269 Dvvid~~g-~------~~~~~~~~~~l~~~G~iv~~  297 (380)
T 1vj0_A          269 DFILEATG-D------SRALLEGSELLRRGGFYSVA  297 (380)
T ss_dssp             EEEEECSS-C------TTHHHHHHHHEEEEEEEEEC
T ss_pred             cEEEECCC-C------HHHHHHHHHHHhcCCEEEEE
Confidence            99997653 1      13578899999999998764

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=83.30  E-value=1.1  Score=44.95  Aligned_cols=88  Identities=16%  Similarity=0.095  Sum_probs=54.4

Q ss_pred             HcCCCCCCCeEEEEcCCC-CHhHHHHH-hcCCCcEEEEecCCCC---------CcEEeccCCCC-----C-CCCCceeEE
Q 010086          110 SEGYLSQSAKSLCVETQY-GQDVFALK-EIGVEDSIGIFKKSSK---------PLVISGEGHRI-----P-FDGNTFDFV  172 (518)
Q Consensus       110 ~~gll~~~~rvLDVGcGt-G~~~~~L~-~~g~~~v~gID~s~~~---------~l~~~~da~~L-----P-f~D~SFD~V  172 (518)
                      ...-+ +|.+||-+|+|. |..+..++ ..|..+|+++|.++..         ..++..+..++     . .....+|+|
T Consensus       162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~v  240 (348)
T 2d8a_A          162 LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVF  240 (348)
T ss_dssp             TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEE
T ss_pred             HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEE
Confidence            34446 899999999965 66654444 4674489999976321         01111110100     0 012369999


Q ss_pred             EEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          173 FVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       173 ~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +....       ....++++.+.|+|||.++..
T Consensus       241 id~~g-------~~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          241 LEFSG-------APKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             EECSC-------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             EECCC-------CHHHHHHHHHHHhcCCEEEEE
Confidence            98653       124678899999999998775

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=83.13  E-value=0.7  Score=45.99  Aligned_cols=92  Identities=14%  Similarity=0.094  Sum_probs=56.1

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCC--CHhH-HHHHhcCCCcEEEEecCCCC-------CcEEeccCCC-CC-------CCC
Q 010086          105 FQDLISEGYLSQSAKSLCVETQY--GQDV-FALKEIGVEDSIGIFKKSSK-------PLVISGEGHR-IP-------FDG  166 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGt--G~~~-~~L~~~g~~~v~gID~s~~~-------~l~~~~da~~-LP-------f~D  166 (518)
                      ++-+.+.+.++++.+||..|++.  |..+ ..++..| .+|+++|.++..       ......|..+ -.       ...
T Consensus       134 ~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~  212 (333)
T 1v3u_A          134 YFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASP  212 (333)
T ss_dssp             HHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCT
T ss_pred             HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhC
Confidence            33444555678999999999843  5544 3444567 489999975310       0000111111 00       011


Q ss_pred             CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          167 NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       167 ~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +.+|+|+.+..        ...+.+..+.|||||.+++.
T Consensus       213 ~~~d~vi~~~g--------~~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          213 DGYDCYFDNVG--------GEFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             TCEEEEEESSC--------HHHHHHHHTTEEEEEEEEEC
T ss_pred             CCCeEEEECCC--------hHHHHHHHHHHhcCCEEEEE
Confidence            46999998764        13478889999999998764

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=82.30  E-value=0.6  Score=47.37  Aligned_cols=92  Identities=13%  Similarity=0.082  Sum_probs=57.9

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCC-----C-CCCC
Q 010086          105 FQDLISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRI-----P-FDGN  167 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~L-----P-f~D~  167 (518)
                      ++-+.+.+-+++|.+||-+|+|. |..+..+++ .| .+|+++|.++..         ..++..+..++     . ..+.
T Consensus       178 ~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~  256 (363)
T 3uog_A          178 WFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATG-AEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDR  256 (363)
T ss_dssp             HHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCC
Confidence            34444556688999999999886 666655544 67 589999976311         11111110110     0 1233


Q ss_pred             ceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          168 TFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       168 SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .+|+|+....        ...+.+..+.|+|||.+++.
T Consensus       257 g~D~vid~~g--------~~~~~~~~~~l~~~G~iv~~  286 (363)
T 3uog_A          257 GADHILEIAG--------GAGLGQSLKAVAPDGRISVI  286 (363)
T ss_dssp             CEEEEEEETT--------SSCHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEECCC--------hHHHHHHHHHhhcCCEEEEE
Confidence            6999997643        12477888999999998876

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=82.10  E-value=3.8  Score=40.75  Aligned_cols=88  Identities=15%  Similarity=0.003  Sum_probs=53.0

Q ss_pred             cCCCCCCCeEEEEcCCCC-HhH-HHHHhcCCCcEEEEecCCCC---------CcEEeccCCC----C-C-CCCCceeEEE
Q 010086          111 EGYLSQSAKSLCVETQYG-QDV-FALKEIGVEDSIGIFKKSSK---------PLVISGEGHR----I-P-FDGNTFDFVF  173 (518)
Q Consensus       111 ~gll~~~~rvLDVGcGtG-~~~-~~L~~~g~~~v~gID~s~~~---------~l~~~~da~~----L-P-f~D~SFD~V~  173 (518)
                      ...+++|++||-+|+|++ ..+ ..++..+..+|+++|.++..         ..++.....+    + . ....-+|.++
T Consensus       158 ~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~  237 (348)
T 4eez_A          158 VSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAI  237 (348)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEE
T ss_pred             ccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEE
Confidence            334689999999999873 333 44445555799999976421         1111110000    0 0 1223467776


Q ss_pred             EcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ....       -...+....+.|+|||.+++.
T Consensus       238 ~~~~-------~~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          238 VCAV-------ARIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             ECCS-------CHHHHHHHHHTEEEEEEEEEC
T ss_pred             Eecc-------CcchhheeheeecCCceEEEE
Confidence            5432       235678889999999998775

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=81.84  E-value=1.3  Score=44.32  Aligned_cols=91  Identities=14%  Similarity=0.064  Sum_probs=56.3

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCC--CHhHHHHH-hcCCCcEEEEecCCCCCc---------EEeccCCCC------CCCCC
Q 010086          106 QDLISEGYLSQSAKSLCVETQY--GQDVFALK-EIGVEDSIGIFKKSSKPL---------VISGEGHRI------PFDGN  167 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGt--G~~~~~L~-~~g~~~v~gID~s~~~~l---------~~~~da~~L------Pf~D~  167 (518)
                      ..+.+..-+++|.+||-+|+|+  |..+..++ ..| .+|+++|.++....         ++.....++      -....
T Consensus       134 ~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~  212 (340)
T 3gms_A          134 VTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILN-FRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGI  212 (340)
T ss_dssp             HHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTS
T ss_pred             HHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCC
Confidence            3455666789999999999985  55554444 467 58999998753211         111111100      01224


Q ss_pred             ceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          168 TFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       168 SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .+|+|+.... -       ....+..+.|||||.++..
T Consensus       213 g~Dvvid~~g-~-------~~~~~~~~~l~~~G~iv~~  242 (340)
T 3gms_A          213 GADAAIDSIG-G-------PDGNELAFSLRPNGHFLTI  242 (340)
T ss_dssp             CEEEEEESSC-H-------HHHHHHHHTEEEEEEEEEC
T ss_pred             CCcEEEECCC-C-------hhHHHHHHHhcCCCEEEEE
Confidence            7999998653 1       2244566899999998775

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=81.61  E-value=3.8  Score=41.63  Aligned_cols=82  Identities=17%  Similarity=0.167  Sum_probs=53.7

Q ss_pred             CCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEecc----CCCCCCCCCceeEEEEcCc
Q 010086          113 YLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGE----GHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       113 ll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~d----a~~LPf~D~SFD~V~s~~~  177 (518)
                      .+++|++||-+|+|. |..+..+++ .| .+|++++.++..         ..++...    .+++.   +.||+|+....
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~---~g~Dvvid~~g  266 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMG-AHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHL---KSFDFILNTVA  266 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTT---TCEEEEEECCS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhh---cCCCEEEECCC
Confidence            478999999999986 666655554 57 479999976421         1111110    11221   46999997653


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                       -.      ..+++..+.|+|||.++..
T Consensus       267 -~~------~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          267 -AP------HNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             -SC------CCHHHHHTTEEEEEEEEEC
T ss_pred             -CH------HHHHHHHHHhccCCEEEEe
Confidence             11      2367889999999998764

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=81.42  E-value=1.6  Score=43.60  Aligned_cols=84  Identities=7%  Similarity=-0.028  Sum_probs=52.8

Q ss_pred             CCCCCCeEEEEcCCC-CHhHHHHH-hcCCCcEEEEecCCCC--------CcEEeccCCCCCCCC------CceeEEEEcC
Q 010086          113 YLSQSAKSLCVETQY-GQDVFALK-EIGVEDSIGIFKKSSK--------PLVISGEGHRIPFDG------NTFDFVFVGG  176 (518)
Q Consensus       113 ll~~~~rvLDVGcGt-G~~~~~L~-~~g~~~v~gID~s~~~--------~l~~~~da~~LPf~D------~SFD~V~s~~  176 (518)
                      -++++.+||-+|+|. |..+..++ ..| .+|++++.++..        ...+ -|..+-.+.+      +.+|+|+...
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~lGa~~~-~d~~~~~~~~~~~~~~~~~d~vid~~  238 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELAKELGADLV-VNPLKEDAAKFMKEKVGGVHAAVVTA  238 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTTCSEE-ECTTTSCHHHHHHHHHSSEEEEEESS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHCCCCEE-ecCCCccHHHHHHHHhCCCCEEEECC
Confidence            478899999999975 66554444 467 599999976321        0000 1111101100      3589998765


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .       ....+++..+.|+|||.++..
T Consensus       239 g-------~~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          239 V-------SKPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             C-------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             C-------CHHHHHHHHHHhhcCCEEEEe
Confidence            3       124678899999999988764

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=81.19  E-value=0.75  Score=46.14  Aligned_cols=83  Identities=10%  Similarity=0.065  Sum_probs=52.9

Q ss_pred             CCCCCCeEEEEcCCC-CHhHHHHHh-c--CCCcEEEEecCCCC---------CcEEec-c----CCCCCCCCCceeEEEE
Q 010086          113 YLSQSAKSLCVETQY-GQDVFALKE-I--GVEDSIGIFKKSSK---------PLVISG-E----GHRIPFDGNTFDFVFV  174 (518)
Q Consensus       113 ll~~~~rvLDVGcGt-G~~~~~L~~-~--g~~~v~gID~s~~~---------~l~~~~-d----a~~LPf~D~SFD~V~s  174 (518)
                      -+ +|++||-+|+|. |..+..+++ .  | .+|+++|.++..         ..++.. +    ..++. ....||+|+.
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~G-a~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~-~g~g~D~vid  244 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKN-ITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLT-DGLGASIAID  244 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHH-TTCCEEEEEE
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhh-cCCCccEEEE
Confidence            35 899999999975 666655544 5  7 579999976321         111110 0    00110 1236999998


Q ss_pred             cCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          175 GGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ...       -...++++.+.|+|||.++..
T Consensus       245 ~~g-------~~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          245 LVG-------TEETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             SSC-------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             CCC-------ChHHHHHHHHHhhcCCEEEEe
Confidence            653       124678899999999998764

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=81.16  E-value=1.8  Score=41.86  Aligned_cols=57  Identities=14%  Similarity=0.296  Sum_probs=41.0

Q ss_pred             cccccCCceEEEEeCCCCCCcchhhhhhhhC-CCCCcceEEEEEcCCccchHhh----ccCCceEEEe
Q 010086          312 ADISFKNRYVYVDVGARSYGSSIGSWFKKQY-PKQNKTFDVYAIEADKTFHEEY----KVKKKVKLLP  374 (518)
Q Consensus       312 ~d~s~~~r~V~iD~GAn~~g~sv~~~F~~~Y-P~~~~~f~V~afE~np~~~~~~----~~~~~V~~~~  374 (518)
                      -.+.++|+..++|+|++. |... ..+.+.- |.+    .||++|.+|...+..    .+.+||+.+-
T Consensus        71 ~~l~ikpG~~VldlG~G~-G~~~-~~la~~VG~~G----~V~avD~s~~~~~~l~~~a~~~~ni~~V~  132 (233)
T 4df3_A           71 IELPVKEGDRILYLGIAS-GTTA-SHMSDIIGPRG----RIYGVEFAPRVMRDLLTVVRDRRNIFPIL  132 (233)
T ss_dssp             SCCCCCTTCEEEEETCTT-SHHH-HHHHHHHCTTC----EEEEEECCHHHHHHHHHHSTTCTTEEEEE
T ss_pred             hhcCCCCCCEEEEecCcC-CHHH-HHHHHHhCCCc----eEEEEeCCHHHHHHHHHhhHhhcCeeEEE
Confidence            356789999999999994 8644 6666654 654    799999999875543    2456776544

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=80.54  E-value=3.3  Score=38.92  Aligned_cols=65  Identities=17%  Similarity=0.185  Sum_probs=43.7

Q ss_pred             ccCCcccccc---cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh----h--ccCCceEEEeec
Q 010086          306 KYLPSMADIS---FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE----Y--KVKKKVKLLPYA  376 (518)
Q Consensus       306 ~ylp~~~d~s---~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~----~--~~~~~V~~~~~A  376 (518)
                      .|-+...|..   .+++.+++|+|+| .|. ++..+.+.+|..    .|+++|.++...+.    .  ...+||+++..-
T Consensus        19 ~~~~~~~d~~~~f~~~~~~vLDiGcG-~G~-~~~~lA~~~p~~----~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~D   92 (218)
T 3dxy_A           19 EFSEDMLDFPALFGREAPVTLEIGFG-MGA-SLVAMAKDRPEQ----DFLGIEVHSPGVGACLASAHEEGLSNLRVMCHD   92 (218)
T ss_dssp             CCCSSCCCHHHHHSSCCCEEEEESCT-TCH-HHHHHHHHCTTS----EEEEECSCHHHHHHHHHHHHHTTCSSEEEECSC
T ss_pred             CCCCCCCCHHHHcCCCCCeEEEEeee-ChH-HHHHHHHHCCCC----eEEEEEecHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            3444444443   2368899999999 486 436777788843    89999999985432    2  134688887763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	518
d2py6a1	395	c.66.1.56 (A:14-408) Methyltransferase FkbM {Methy	1e-07

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} Length = 395

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 31/199 (15%), Positives = 55/199 (27%), Gaps = 44/199 (22%)

Query: 295 WITMKRNIKNIKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAI 354
           +        +  Y  S   + F +    VD GA S G S+          + K   V+ I
Sbjct: 190 YYHEVERPYSTLYFRSGL-LRFSDSEKMVDCGA-SIGESLAGLIGV---TKGKFERVWMI 244

Query: 355 EADKTFHEEYK----------VKKKVKLLPYAAWVRNETLSFQINHDPDKEVVVKGRGMG 404
           E D+   +  +             ++ +    A      + F                  
Sbjct: 245 EPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGENTIRVPFNHEGGHGG---------- 294

Query: 405 RIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETG 464
                            D I      D + +  T      +KMD+EG+E   +      G
Sbjct: 295 -----FVKPADADHEPADLIDVRPIDDIIDDAPT-----FIKMDIEGSELSAL-----KG 339

Query: 465 AICLIDE----IFLECHYN 479
           A   I E    + +  ++ 
Sbjct: 340 ARRAISEHKPKLAISAYHR 358

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	518
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.76
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.75
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.74
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.71
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.7
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.63
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.62
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.58
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.56
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.55
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.53
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.51
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.5
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.49
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	99.47
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.46
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.46
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.45
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.45
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.41
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.41
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.34
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.32
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.28
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.26
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.26
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.25
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.24
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.23
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.22
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.22
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.21
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.2
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.19
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.17
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.15
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.13
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.13
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.13
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.12
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.06
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.05
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.03
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.02
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.96
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.96
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.95
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.93
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.83
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.78
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.69
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.65
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.31
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.3
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.25
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.24
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.18
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.15
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.09
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.09
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.08
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	97.97
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.91
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	97.91
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.84
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	97.84
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	97.81
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	97.76
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.75
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.71
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.66
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.61
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.54
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	97.49
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.46
d2h00a1	250	Methyltransferase 10 domain containing protein MET	97.41
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.35
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.3
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.25
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.18
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.08
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	96.92
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	96.8
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	96.71
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	96.68
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	96.65
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	96.54
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	96.4
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	96.34
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.34
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	96.11
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	96.09
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	95.98
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.57
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.51
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	95.23
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.2
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.94
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.88
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	94.77
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	94.7
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.61
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.4
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.38
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	93.79
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.72
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	93.53
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.08
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	92.89
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	92.42
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.27
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	91.89
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	91.3
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.0
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	90.79
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.41
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	90.22
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.83
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	89.72
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	89.41
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	89.02
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	88.84
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	88.04
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	86.95
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	86.59
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	86.4
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	85.44
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	85.13
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	83.66
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	83.11
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	82.18
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	81.91
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	81.83
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	81.35
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	80.29

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=1.7e-18  Score=164.35  Aligned_cols=118  Identities=23%  Similarity=0.345  Sum_probs=92.4

Q ss_pred             chhhccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC---------CCCcE
Q 010086           84 SRRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS---------SKPLV  154 (518)
Q Consensus        84 ~~~~~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~---------~~~l~  154 (518)
                      .|+..+....|+...+....++.    . .++++.+|||+|||+|..+..|++.| .+|+|||+|+         .....
T Consensus        15 ~Yd~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~l~~a~~~~~~~~   88 (246)
T d2avna1          15 AYDSMYETPKWKLYHRLIGSFLE----E-YLKNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGVKNV   88 (246)
T ss_dssp             HHGGGGCSHHHHHHHHHHHHHHH----H-HCCSCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHHTCSCE
T ss_pred             HHHHHhccccchHHHHHHHHHHH----H-hcCCCCEEEEECCCCchhcccccccc-eEEEEeeccccccccccccccccc
Confidence            34455555544433333333332    2 25678899999999999999999887 5899999984         23456


Q ss_pred             EeccCCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          155 ISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       155 ~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +.+++++|||++++||+|+|....+||++||.++++|+.|+|||||++++.+.
T Consensus        89 ~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1          89 VEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             EECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccccccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence            78999999999999999998653389999999999999999999999999874

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.75  E-value=1.2e-18  Score=165.05  Aligned_cols=99  Identities=21%  Similarity=0.254  Sum_probs=85.7

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C-CcEEeccCCCCCCCCCcee
Q 010086          106 QDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K-PLVISGEGHRIPFDGNTFD  170 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~-~l~~~~da~~LPf~D~SFD  170 (518)
                      .+|++...++++.+|||||||+|..+..+++.| .+|+|+|+|+.              + ..++++|++++||++++||
T Consensus         5 ~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD   83 (231)
T d1vl5a_           5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFH   83 (231)
T ss_dssp             HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEE
T ss_pred             HHHHHhcCCCCcCEEEEecccCcHHHHHHHHhC-CEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccc
Confidence            345555668999999999999999999998887 69999999841              1 2367899999999999999


Q ss_pred             EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +|+|..+ ++|++||.++++|+.|+|||||++++..
T Consensus        84 ~v~~~~~-l~~~~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          84 IVTCRIA-AHHFPNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             EEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccc-ccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            9999998 9999999999999999999999998864

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.74  E-value=2.1e-18  Score=164.84  Aligned_cols=97  Identities=19%  Similarity=0.267  Sum_probs=85.3

Q ss_pred             HHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEE
Q 010086          108 LISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFV  172 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V  172 (518)
                      |++..-+++|.||||||||+|..+..|++.+ .+|+|||+|+.               ...++++|++++||+|++||+|
T Consensus         8 l~~~~~~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v   86 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDII   86 (234)
T ss_dssp             HHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEE
T ss_pred             HHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhccccccccccccccccccccccccccee
Confidence            3344458999999999999999999998876 79999999841               1235789999999999999999


Q ss_pred             EEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          173 FVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       173 ~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +|..+ ++|++||..+++|+.|+|||||++++..
T Consensus        87 ~~~~~-l~~~~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          87 TCRYA-AHHFSDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             EEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeece-eecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence            99998 9999999999999999999999988864

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.71  E-value=1.5e-17  Score=163.59  Aligned_cols=105  Identities=24%  Similarity=0.283  Sum_probs=90.3

Q ss_pred             hHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------------CCcEEeccCCCC
Q 010086          100 FYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------------KPLVISGEGHRI  162 (518)
Q Consensus       100 ~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------------~~l~~~~da~~L  162 (518)
                      ....+.+.|.....++++.+|||||||+|..+..|++. | .+|+|||+|+.                ...++.+|++++
T Consensus        51 ~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l  129 (282)
T d2o57a1          51 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI  129 (282)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCC-cEEEEEeccchhhhhhhcccccccccccccccccccccc
Confidence            34455566777778899999999999999999888775 5 68999999841                123578999999


Q ss_pred             CCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          163 PFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       163 Pf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ||++++||+|+|..+ |+|++++.++++|+.|+|||||++++..
T Consensus       130 ~~~~~sfD~V~~~~~-l~h~~d~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         130 PCEDNSYDFIWSQDA-FLHSPDKLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             SSCTTCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccchhhccch-hhhccCHHHHHHHHHHhcCCCcEEEEEE
Confidence            999999999999998 9999999999999999999999998874

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.70  E-value=3.9e-17  Score=152.89  Aligned_cols=93  Identities=23%  Similarity=0.388  Sum_probs=81.2

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      .++++++|||||||+|..+..|++.| .+++|+|+|+.              ....+.+|+.++|+++++||+|+|..+ 
T Consensus        34 ~l~~~~~ILDiGcG~G~~~~~la~~~-~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~-  111 (226)
T d1ve3a1          34 YMKKRGKVLDLACGVGGFSFLLEDYG-FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDS-  111 (226)
T ss_dssp             SCCSCCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESC-
T ss_pred             hcCCCCEEEEECCCcchhhhhHhhhh-cccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecc-
Confidence            46788999999999999999999887 68999999831              233568899999999999999999998 


Q ss_pred             eeccC--ChHHHHHHHHhcccCCcEEEEEec
Q 010086          179 LEKAS--KPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       179 l~~~~--dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++|++  ++.++++|+.|+|||||.+++.+.
T Consensus       112 l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         112 IVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             GGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            99987  566899999999999999988764

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=5e-16  Score=149.27  Aligned_cols=100  Identities=15%  Similarity=0.081  Sum_probs=83.2

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C--CcEEeccCCCCCCCCCc
Q 010086          105 FQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K--PLVISGEGHRIPFDGNT  168 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~--~l~~~~da~~LPf~D~S  168 (518)
                      ++.|.+..-+++|.+|||||||+|..+..+++....+|+|||+|+.              .  ..++.+|++++ +++++
T Consensus        22 ~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~  100 (245)
T d1nkva_          22 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEK  100 (245)
T ss_dssp             HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSC
T ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCc
Confidence            3344455568999999999999999998887642269999999841              1  23578999998 57999


Q ss_pred             eeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          169 FDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ||+|+|..+ ++|+.|+.++++|+.|+|||||++++..
T Consensus       101 fD~v~~~~~-~~~~~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_         101 CDVAACVGA-TWIAGGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             EEEEEEESC-GGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             eeEEEEEeh-hhccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence            999999998 9999999999999999999999999874

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=3.6e-16  Score=145.93  Aligned_cols=89  Identities=20%  Similarity=0.350  Sum_probs=77.7

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------CCcEEeccCCCCCCCCCceeEEEEcCceeeccCChH
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPL  186 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~  186 (518)
                      .++++|||||||+|..+..++     .++|||+|+.        ...+.++|++++|+++++||+|+|..+ |+|+++|.
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~-l~h~~d~~  108 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTT-ICFVDDPE  108 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESC-GGGSSCHH
T ss_pred             CCCCeEEEECCCCcccccccc-----eEEEEeCChhhcccccccccccccccccccccccccccccccccc-cccccccc
Confidence            467799999999999987773     5689999842        345679999999999999999999998 99999999


Q ss_pred             HHHHHHHhcccCCcEEEEEecCC
Q 010086          187 DFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       187 ~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      ++++|+.|+|||||.+++.+...
T Consensus       109 ~~l~~~~~~L~pgG~l~i~~~~~  131 (208)
T d1vlma_         109 RALKEAYRILKKGGYLIVGIVDR  131 (208)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEECS
T ss_pred             cchhhhhhcCCCCceEEEEecCC
Confidence            99999999999999999986533

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.9e-15  Score=141.97  Aligned_cols=121  Identities=8%  Similarity=0.099  Sum_probs=92.2

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      ..++.+|||||||+|..+..|.+.+..+|+|||+|+.               ...+.++|++++++++++||+|++..+ 
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~-  136 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV-  136 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC-
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc-
Confidence            3567899999999999998876555578999999841               013568999999999999999999998 


Q ss_pred             eeccCChH--HHHHHHHhcccCCcEEEEEecC-CCc-----------cCchhHhhhcc--CccEEEEeccCCC
Q 010086          179 LEKASKPL--DFASEIVRTLKPEGFAVVHVRA-KDE-----------YSFNSFLDLFN--SCKLVKSRDIDGI  235 (518)
Q Consensus       179 l~~~~dp~--~~l~Ei~RVLKPGG~lvi~~~~-~~~-----------~s~~~~~~lf~--~~~~v~~~~v~~~  235 (518)
                      ++|++++.  ++++++.|+|||||.+++.... .+.           ++...+.++|.  +++++......+|
T Consensus       137 l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q~~f  209 (222)
T d2ex4a1         137 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENL  209 (222)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred             cccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEeCCC
Confidence            99998874  7899999999999999887321 110           23344566664  4677776665444

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.56  E-value=5.7e-15  Score=137.47  Aligned_cols=116  Identities=12%  Similarity=0.220  Sum_probs=86.4

Q ss_pred             CCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C-CcEEeccCCCCCCCCCceeEEEEcC
Q 010086          112 GYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K-PLVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       112 gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~-~l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      ..+++ ++|||||||+|..+..|++.| .+|+|+|+|+.              . ..+..+|...+++ +++||+|+|..
T Consensus        27 ~~~~~-grvLDiGcG~G~~~~~la~~g-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~  103 (198)
T d2i6ga1          27 KVVAP-GRTLDLGCGNGRNSLYLAANG-YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTV  103 (198)
T ss_dssp             TTSCS-CEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEES
T ss_pred             ccCCC-CcEEEECCCCCHHHHHHHHHh-hhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEee
Confidence            44555 499999999999999999988 58999999842              1 1235678888876 78999999999


Q ss_pred             ceeeccCChH--HHHHHHHhcccCCcEEEEEecCCC-----------ccCchhHhhhccCccEEEEec
Q 010086          177 ARLEKASKPL--DFASEIVRTLKPEGFAVVHVRAKD-----------EYSFNSFLDLFNSCKLVKSRD  231 (518)
Q Consensus       177 ~~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~~~~~~-----------~~s~~~~~~lf~~~~~v~~~~  231 (518)
                      + ++|++++.  ++++++.|+|||||++++......           .++...+..+|..++++...+
T Consensus       104 ~-~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~i~~~~e  170 (198)
T d2i6ga1         104 V-MMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELRRYYEGWDMLKYNE  170 (198)
T ss_dssp             C-GGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC---------CCCCBCTTHHHHHTTTSEEEEEEE
T ss_pred             e-eecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCCCCCCCCCccCHHHHHHHhCCCeEEEeee
Confidence            7 99997654  689999999999999888642211           022233555667677765443

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=6.1e-15  Score=140.73  Aligned_cols=101  Identities=19%  Similarity=0.246  Sum_probs=81.3

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCcee
Q 010086          105 FQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFD  170 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD  170 (518)
                      ++.+......+++.+|||||||||..+..|++.| .+|+|||+|+.              ...+.++|++++|+++ +||
T Consensus        30 ~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~-~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~-~fD  107 (251)
T d1wzna1          30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKN-EFD  107 (251)
T ss_dssp             HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCS-CEE
T ss_pred             HHHHHHHhcCCCCCEEEEeCCCCCccchhhcccc-eEEEEEeeccccccccccccccccccchheehhhhhccccc-ccc
Confidence            3444444456677899999999999999999988 58999999841              2446799999999985 899


Q ss_pred             EEEEcCceeeccC--ChHHHHHHHHhcccCCcEEEEEec
Q 010086          171 FVFVGGARLEKAS--KPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       171 ~V~s~~~~l~~~~--dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +|+|...+++|+.  ++.+++++++|+|||||++++.+.
T Consensus       108 ~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1         108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            9999753377764  455899999999999999998753

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.53  E-value=6.7e-15  Score=139.80  Aligned_cols=91  Identities=14%  Similarity=0.088  Sum_probs=78.4

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------CCcEEeccCCCCCCCCCceeEEEEcCceeeccCC
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASK  184 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~d  184 (518)
                      ++.+|||||||+|..+..|++.| .+|+|||+|+.           ...++.++.+.+++ +++||+|++..+ |+|++|
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~v-leh~~d   96 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHV-LEHIDD   96 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTC-SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESC-GGGCSS
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcC-CeEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccce-eEecCC
Confidence            46689999999999999998887 68999999841           12356788888876 689999999998 999999


Q ss_pred             hHHHHHHHH-hcccCCcEEEEEecCC
Q 010086          185 PLDFASEIV-RTLKPEGFAVVHVRAK  209 (518)
Q Consensus       185 p~~~l~Ei~-RVLKPGG~lvi~~~~~  209 (518)
                      |..+++|+. |+|||||++++.+...
T Consensus        97 ~~~~l~~i~~~~Lk~gG~l~i~~pn~  122 (225)
T d2p7ia1          97 PVALLKRINDDWLAEGGRLFLVCPNA  122 (225)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             HHHHHHHHHHHhcCCCceEEEEeCCc
Confidence            999999998 8999999999987543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.51  E-value=4.2e-14  Score=137.55  Aligned_cols=124  Identities=15%  Similarity=0.113  Sum_probs=91.4

Q ss_pred             HcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------CC--cEEeccCCCCCCCCCceeEEEEcC
Q 010086          110 SEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------KP--LVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       110 ~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------~~--l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      +.-...++.+|||+|||+|..+..|...++..|++||+++.           .+  .+.+++.+++++++++||+|+|..
T Consensus        87 ~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~  166 (254)
T d1xtpa_          87 ASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQW  166 (254)
T ss_dssp             HTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEES
T ss_pred             hhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeec
Confidence            33334567899999999999998776655578999999841           11  246799999999999999999999


Q ss_pred             ceeeccCChH--HHHHHHHhcccCCcEEEEEec--CCCc-----------cCchhHhhhcc--CccEEEEeccCC
Q 010086          177 ARLEKASKPL--DFASEIVRTLKPEGFAVVHVR--AKDE-----------YSFNSFLDLFN--SCKLVKSRDIDG  234 (518)
Q Consensus       177 ~~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~~~--~~~~-----------~s~~~~~~lf~--~~~~v~~~~v~~  234 (518)
                      + ++|+++++  ++++++.|+|||||++++...  ..+.           .+...+.++|+  .++++....-.+
T Consensus       167 v-l~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~q~~  240 (254)
T d1xtpa_         167 T-AIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEE  240 (254)
T ss_dssp             C-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECTT
T ss_pred             c-ccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEeeCC
Confidence            8 99998875  789999999999999988532  1110           13334566665  456666555433

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=2.9e-14  Score=139.59  Aligned_cols=90  Identities=19%  Similarity=0.239  Sum_probs=75.1

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC----------CCcEEeccCCCCCCCCCceeEEEEcCceeec
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS----------KPLVISGEGHRIPFDGNTFDFVFVGGARLEK  181 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~----------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~  181 (518)
                      +..++.+|||||||+|..+..|++.+ ...++|||+|+.          ...+.++|++++||+|++||+|++..+ ++|
T Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~-~~~  159 (268)
T d1p91a_          81 LDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA-PCK  159 (268)
T ss_dssp             SCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC-CCC
T ss_pred             cCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCC-HHH
Confidence            45677899999999999999998764 358999999842          234578999999999999999999886 665


Q ss_pred             cCChHHHHHHHHhcccCCcEEEEEecCCC
Q 010086          182 ASKPLDFASEIVRTLKPEGFAVVHVRAKD  210 (518)
Q Consensus       182 ~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~  210 (518)
                             ++|+.|||||||++++.+...+
T Consensus       160 -------~~e~~rvLkpgG~l~~~~p~~~  181 (268)
T d1p91a_         160 -------AEELARVVKPGGWVITATPGPR  181 (268)
T ss_dssp             -------HHHHHHHEEEEEEEEEEEECTT
T ss_pred             -------HHHHHHHhCCCcEEEEEeeCCc
Confidence                   6899999999999999875443

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.49  E-value=3.1e-14  Score=137.42  Aligned_cols=95  Identities=18%  Similarity=0.245  Sum_probs=79.0

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCC-CCCceeEEEEc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPF-DGNTFDFVFVG  175 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf-~D~SFD~V~s~  175 (518)
                      +++++.+|||||||+|..+..+++.|...|+|||+|+.                ...+.++|+...++ .+++||+|+|.
T Consensus        21 ~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~  100 (252)
T d1ri5a_          21 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  100 (252)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             hCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence            47889999999999999998888888778999999841                11245789888887 58899999999


Q ss_pred             CceeeccCCh----HHHHHHHHhcccCCcEEEEEecC
Q 010086          176 GARLEKASKP----LDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       176 ~~~l~~~~dp----~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      .+ +||+.++    ..+++++.|+|||||++++.+..
T Consensus       101 ~~-l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_         101 FS-FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             SC-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ce-eeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence            97 9998544    36899999999999999987643

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=99.47  E-value=3.9e-14  Score=146.65  Aligned_cols=155  Identities=17%  Similarity=0.225  Sum_probs=100.4

Q ss_pred             cccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhc----------cCCceEEEeeceeecCCc
Q 010086          314 ISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK----------VKKKVKLLPYAAWVRNET  383 (518)
Q Consensus       314 ~s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~----------~~~~V~~~~~Av~~~~~t  383 (518)
                      ++++++.|||||||| +|.+. .+|.+.++....  +||+|||||...+.++          ...+|++++.|+|.++++
T Consensus       208 ~~l~kn~vfIDVGAn-iG~~s-~~f~~~~~~~~~--kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~~alsd~~~~  283 (395)
T d2py6a1         208 LRFSDSEKMVDCGAS-IGESL-AGLIGVTKGKFE--RVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGENTIR  283 (395)
T ss_dssp             CCCCSSCEEEEETCT-TSHHH-HHHHHHHTSCCS--EEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECSSCEE
T ss_pred             cCcCCCCEEEECCcC-CCHHH-HHHHHhcCCCCC--EEEEEeCCHHHHHHHHHHHHhcccccccceEEEEEEEeeccceE
Confidence            457899999999999 69744 678887775433  8999999999765543          124689999999999999


Q ss_pred             eEEEecCCCCcchhhcccCCccccccccCCCCCCCCCcceeecccHHHHHhhcCCCCCeEEEEeeccchhhhhHHHHHhc
Q 010086          384 LSFQINHDPDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFET  463 (518)
Q Consensus       384 l~f~~~~~~~~~~~~~~~g~~~i~p~~~~~~~~~~g~~~~v~~vd~s~wl~~~v~~~D~VVlKMDIEGaE~~vL~~l~~~  463 (518)
                      +.|..+...+.          .+.....     ......+|+.+.+.+++.+.   .|  ++||||||+|++||+.+.+ 
T Consensus       284 ~~f~~~~~~~s----------~~~~~~~-----~~~~~~~V~~~tLD~l~~~~---id--~IKIDVEG~E~~VLkGa~~-  342 (395)
T d2py6a1         284 VPFNHEGGHGG----------FVKPADA-----DHEPADLIDVRPIDDIIDDA---PT--FIKMDIEGSELSALKGARR-  342 (395)
T ss_dssp             EEC-----------------------------------CEEEEECHHHHCSSC---CS--EEEECCSSCHHHHHHTTHH-
T ss_pred             EEEecCCCccc----------ccccccc-----CCCceEEEEEEEHHHhcCCC---CC--EEEEcCCCCHHHHHHHHHH-
Confidence            88854433221          1111111     11234568888888888653   35  6999999999999987633 


Q ss_pred             CCccccc-EEEEEeecccccccCCCCCCCcccccHHHHHHHHHHHh
Q 010086          464 GAICLID-EIFLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTSLR  508 (518)
Q Consensus       464 g~i~~ID-eLfvE~H~~~~~~~~~g~~~~~~~~~~~~cl~L~~~LR  508 (518)
                       +|+.-. .+++|++.+.              ...++..+++.+|-
T Consensus       343 -~Lk~~kPiI~IEiyh~~--------------~d~~~i~~~L~~l~  373 (395)
T d2py6a1         343 -AISEHKPKLAISAYHRS--------------TDLLDLTNYILSIR  373 (395)
T ss_dssp             -HHHHHCCEEEEECCSST--------------THHHHHHHHHHHHC
T ss_pred             -HHHhCCCEEEEEEeccH--------------hhHHHHHHHHHHhc
Confidence             343221 4889986431              12467777777773

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.46  E-value=1e-13  Score=131.17  Aligned_cols=92  Identities=13%  Similarity=0.131  Sum_probs=71.5

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc---CCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI---GVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~---g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      .++++.+|||||||||..+..|++.   +..+++|||+|+.              ...+....+..++++.+.+|+|+|.
T Consensus        36 ~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~  115 (225)
T d1im8a_          36 FVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILN  115 (225)
T ss_dssp             HCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEE
T ss_pred             hcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEe
Confidence            3688999999999999999888753   2369999999841              1122223334456667789999998


Q ss_pred             CceeeccC--ChHHHHHHHHhcccCCcEEEEE
Q 010086          176 GARLEKAS--KPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       176 ~~~l~~~~--dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .+ +||+.  ++.+++++|+|+|||||.+++.
T Consensus       116 ~~-l~~~~~~d~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         116 FT-LQFLPPEDRIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             SC-GGGSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ee-ccccChhhHHHHHHHHHHhCCCCceeecc
Confidence            87 88884  6778999999999999999886

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.46  E-value=8e-14  Score=133.36  Aligned_cols=116  Identities=11%  Similarity=0.078  Sum_probs=84.9

Q ss_pred             hhhccCC-hhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------
Q 010086           85 RRDMYTS-KEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------  150 (518)
Q Consensus        85 ~~~~w~s-~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------  150 (518)
                      |..+... .++++.++++...+    ... -.++.+|||||||+|..+..|++.| .+++|||+|+.             
T Consensus        10 YD~l~~~~~~y~~~~~~~~~~~----~~~-~~~~~~vLDiGCG~G~~~~~l~~~g-~~v~GvD~S~~ml~~A~~~~~~~~   83 (246)
T d1y8ca_          10 YDKLIRADVDYKKWSDFIIEKC----VEN-NLVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQG   83 (246)
T ss_dssp             HHHHTTCSCCHHHHHHHHHHHH----HTT-TCCTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCCCHHHHHHHHHHHH----HHh-CCCCCeEEEEeCcCCHHHHHHHHhC-CccEeeccchhhhhhccccccccC
Confidence            4334332 34555554444333    332 2346799999999999999999988 58999999841             


Q ss_pred             -CCcEEeccCCCCCCCCCceeEEEEcCceeeccCCh---HHHHHHHHhcccCCcEEEEEec
Q 010086          151 -KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKP---LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       151 -~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp---~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                       ...++++|+.++++ +++||+|+|...+++|+.++   .+++++++|.|||||.+++.+.
T Consensus        84 ~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_          84 LKPRLACQDISNLNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             CCCEEECCCGGGCCC-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ccceeeccchhhhcc-cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence             23467899999887 46899999874337777644   4689999999999999998764

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.45  E-value=1.2e-13  Score=135.97  Aligned_cols=103  Identities=13%  Similarity=0.197  Sum_probs=81.6

Q ss_pred             HHHHHHHHcC-CCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC------------C--CcEEeccCCCCCCC
Q 010086          103 SVFQDLISEG-YLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS------------K--PLVISGEGHRIPFD  165 (518)
Q Consensus       103 ~l~~~L~~~g-ll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~------------~--~l~~~~da~~LPf~  165 (518)
                      ..++.+++.. .+.++.+|||||||+|..+..|++. + ..+|+|+|+|+.            +  ..++.+|++++|++
T Consensus        13 d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~   92 (281)
T d2gh1a1          13 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN   92 (281)
T ss_dssp             HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS
T ss_pred             HHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc
Confidence            3344444332 3566789999999999999888763 2 258999999841            1  23468899999986


Q ss_pred             CCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          166 GNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       166 D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      + +||+|+|..+ ++|+++|..+++++.|+|||||.+++...
T Consensus        93 ~-~fD~v~~~~~-l~~~~d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1          93 D-KYDIAICHAF-LLHMTTPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             S-CEEEEEEESC-GGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             C-CceEEEEehh-hhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            5 7999999998 99999999999999999999999888653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.45  E-value=1.2e-13  Score=125.51  Aligned_cols=92  Identities=11%  Similarity=0.035  Sum_probs=75.7

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------------------CCcEEeccCCCCC-C
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------------------KPLVISGEGHRIP-F  164 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------------------~~l~~~~da~~LP-f  164 (518)
                      .++++.||||+|||+|..+..|++.| .+|+|+|+|+.                           ...+.++|...++ +
T Consensus        17 ~~~~~~rvLd~GCG~G~~a~~la~~G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~   95 (201)
T d1pjza_          17 NVVPGARVLVPLCGKSQDMSWLSGQG-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   95 (201)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHcC-CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence            37899999999999999999999998 59999999831                           1124577888886 4


Q ss_pred             CCCceeEEEEcCceeeccCC--hHHHHHHHHhcccCCcEEEEEe
Q 010086          165 DGNTFDFVFVGGARLEKASK--PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       165 ~D~SFD~V~s~~~~l~~~~d--p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +..+||+|++..+ ++|+.+  ...+++++.|+|||||.+++..
T Consensus        96 ~~~~~D~i~~~~~-l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          96 DIGHCAAFYDRAA-MIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             HHHSEEEEEEESC-GGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             cccceeEEEEEee-eEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence            5789999999987 888864  3578999999999999987754

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.9e-13  Score=128.74  Aligned_cols=115  Identities=12%  Similarity=0.089  Sum_probs=85.3

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC--------------------------------CcEEeccCC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK--------------------------------PLVISGEGH  160 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~--------------------------------~l~~~~da~  160 (518)
                      .++++.||||+|||+|..+..|++.| .+|+|||+|+..                                ..+.++|..
T Consensus        42 ~~~~~~rvLd~GCG~G~~a~~LA~~G-~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          42 KGKSGLRVFFPLCGKAVEMKWFADRG-HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             TTCCSCEEEETTCTTCTHHHHHHHTT-CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            35788999999999999999999999 599999998410                                113467777


Q ss_pred             CC-CCCCCceeEEEEcCceeeccCC--hHHHHHHHHhcccCCcEEEEEecCCC-------c--cCchhHhhhccC-ccEE
Q 010086          161 RI-PFDGNTFDFVFVGGARLEKASK--PLDFASEIVRTLKPEGFAVVHVRAKD-------E--YSFNSFLDLFNS-CKLV  227 (518)
Q Consensus       161 ~L-Pf~D~SFD~V~s~~~~l~~~~d--p~~~l~Ei~RVLKPGG~lvi~~~~~~-------~--~s~~~~~~lf~~-~~~v  227 (518)
                      ++ |..+++||+|++..+ |+|+..  ....++++.|+|||||.+++.+-..+       .  .+...+..+|.. +++.
T Consensus       121 ~l~~~~~~~fd~i~~~~~-l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~~~~i~  199 (229)
T d2bzga1         121 DLPRTNIGKFDMIWDRGA-LVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGKICNIR  199 (229)
T ss_dssp             GGGGSCCCCEEEEEESSS-TTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTTTEEEE
T ss_pred             hccccccCceeEEEEEEE-EEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcCCCEEE
Confidence            77 578899999999987 898853  34788999999999998776642211       1  244456777754 3444


Q ss_pred             EE
Q 010086          228 KS  229 (518)
Q Consensus       228 ~~  229 (518)
                      .+
T Consensus       200 ~l  201 (229)
T d2bzga1         200 CL  201 (229)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.41  E-value=2.9e-13  Score=134.62  Aligned_cols=98  Identities=13%  Similarity=0.081  Sum_probs=76.9

Q ss_pred             HHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCCC-------------CcEEeccCCCCCCCCCceeEE
Q 010086          107 DLISEGYLSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSSK-------------PLVISGEGHRIPFDGNTFDFV  172 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~~-------------~l~~~~da~~LPf~D~SFD~V  172 (518)
                      .+++..-+++|.+|||||||.|..+..+++ .| .+|+||++|+..             ...+.......++++++||.|
T Consensus        52 ~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i  130 (291)
T d1kpia_          52 LALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRI  130 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEE
T ss_pred             HHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccceE
Confidence            345556689999999999999999987765 56 699999998520             111222233446789999999


Q ss_pred             EEcCceeeccCCh---------HHHHHHHHhcccCCcEEEEEe
Q 010086          173 FVGGARLEKASKP---------LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       173 ~s~~~~l~~~~dp---------~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +|..+ |+|+.++         ..+++++.|+|||||++++++
T Consensus       131 ~sie~-~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         131 VSLGA-FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             EEESC-GGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             eechh-HHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            99998 9999874         578999999999999999973

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.34  E-value=1.4e-12  Score=128.75  Aligned_cols=96  Identities=15%  Similarity=0.109  Sum_probs=74.9

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC--------------CCc--EEeccCCCCCCCCCc
Q 010086          106 QDLISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS--------------KPL--VISGEGHRIPFDGNT  168 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~--------------~~l--~~~~da~~LPf~D~S  168 (518)
                      +.+++.--+++|.+|||||||+|..+..+++. | .+|+|||+|+.              ...  +...|...+   +++
T Consensus        42 ~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~  117 (280)
T d2fk8a1          42 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEP  117 (280)
T ss_dssp             HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCC
T ss_pred             HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccc
Confidence            34455556899999999999999999777764 6 69999999842              111  223444433   579


Q ss_pred             eeEEEEcCceeeccCCh--HHHHHHHHhcccCCcEEEEEe
Q 010086          169 FDFVFVGGARLEKASKP--LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ||.|+|..+ ++|+.++  ..+++++.|+|||||+++++.
T Consensus       118 fD~i~si~~-~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         118 VDRIVSIEA-FEHFGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             CSEEEEESC-GGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hhhhhHhhH-HHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence            999999998 9999765  689999999999999999974

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3e-13  Score=129.07  Aligned_cols=91  Identities=14%  Similarity=0.090  Sum_probs=71.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------CC--cEEeccCC--CCCCCCCceeEEEE---
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------KP--LVISGEGH--RIPFDGNTFDFVFV---  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~~--l~~~~da~--~LPf~D~SFD~V~s---  174 (518)
                      ..+|.+|||||||+|..+..+++.+..+++|||+|+.            ..  ..+.+++.  ..++++++||.|+.   
T Consensus        51 ~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~  130 (229)
T d1zx0a1          51 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  130 (229)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             ccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence            3678899999999999999888766578999999841            11  12334443  34788999999983   


Q ss_pred             --cCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          175 --GGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       175 --~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                        ... ++|..++..+++|+.|+|||||++++.
T Consensus       131 ~~~~~-~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         131 PLSEE-TWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CCBGG-GTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccccc-cccccCHHHHHHHHHHHcCCCcEEEEE
Confidence              333 778888899999999999999998874

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.28  E-value=5.2e-12  Score=125.08  Aligned_cols=95  Identities=18%  Similarity=0.183  Sum_probs=75.6

Q ss_pred             HHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCce
Q 010086          107 DLISEGYLSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTF  169 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SF  169 (518)
                      .+++..-+++|.+|||||||.|..+..+++ .| .+|+||++|+.                ...+..+|...+|   ++|
T Consensus        53 ~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~f  128 (285)
T d1kpga_          53 LALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPV  128 (285)
T ss_dssp             HHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCC
T ss_pred             HHHHHcCCCCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccc
Confidence            344555689999999999999999977655 56 69999999841                1123466776664   689


Q ss_pred             eEEEEcCceeeccCCh--HHHHHHHHhcccCCcEEEEEe
Q 010086          170 DFVFVGGARLEKASKP--LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       170 D~V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      |.|+|..+ ++|+..+  ..+++++.|+|||||.+++++
T Consensus       129 D~i~si~~-~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         129 DRIVSIGA-FEHFGHERYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             SEEEEESC-GGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cceeeehh-hhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence            99999998 9999644  789999999999999998863

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2e-12  Score=123.33  Aligned_cols=93  Identities=15%  Similarity=-0.075  Sum_probs=71.7

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------CCcE---------------------------
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------KPLV---------------------------  154 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~~l~---------------------------  154 (518)
                      ..++.+|||||||+|..+..++..+..+|+|+|+|+.            ...+                           
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            3567899999999998876676666568999999841            0000                           


Q ss_pred             ----------EeccCCCCCCCCCceeEEEEcCceeeccC----ChHHHHHHHHhcccCCcEEEEEec
Q 010086          155 ----------ISGEGHRIPFDGNTFDFVFVGGARLEKAS----KPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       155 ----------~~~da~~LPf~D~SFD~V~s~~~~l~~~~----dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                                +..+....|+++++||+|++..+ +||+.    ++..+++++.|+|||||.+++...
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~-l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~  194 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLA-MECACCSLDAYRAALCNLASLLKPGGHLVTTVT  194 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhh-HHHhcccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence                      01233345899999999999997 99985    455789999999999999998753

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.26  E-value=1.2e-11  Score=114.58  Aligned_cols=93  Identities=12%  Similarity=0.076  Sum_probs=73.9

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------------KPLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------------~~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      .+.++.+|||+|||+|..+..+++.+ .+|+++|+++.                 ...+..+|..+ ++++++||+|++.
T Consensus        49 ~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~  126 (194)
T d1dusa_          49 VVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITN  126 (194)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEEC
T ss_pred             CcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEc
Confidence            46788999999999999998888765 79999999841                 11234677766 7889999999998


Q ss_pred             CceeeccCCh-HHHHHHHHhcccCCcEEEEEecC
Q 010086          176 GARLEKASKP-LDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       176 ~~~l~~~~dp-~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      .. +|+..+. .++++++.|.|||||++++....
T Consensus       127 ~p-~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  159 (194)
T d1dusa_         127 PP-IRAGKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             CC-STTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             cc-EEecchhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence            76 6665443 56899999999999998876543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.9e-12  Score=122.04  Aligned_cols=95  Identities=9%  Similarity=-0.036  Sum_probs=70.2

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHh----c--C-CCcEEEEecCCC------------C--Cc----EEeccC------CCC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKE----I--G-VEDSIGIFKKSS------------K--PL----VISGEG------HRI  162 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~----~--g-~~~v~gID~s~~------------~--~l----~~~~da------~~L  162 (518)
                      .++..+|||||||+|..+..+.+    .  + ...++|||+|+.            +  ..    +...++      ...
T Consensus        38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (280)
T d1jqea_          38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE  117 (280)
T ss_dssp             TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc
Confidence            34556899999999998755432    1  1 136899998731            0  11    112222      234


Q ss_pred             CCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          163 PFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       163 Pf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      ++++++||+|+|.++ |+|++||..+++++.|+|||||.+++.+...
T Consensus       118 ~~~~~~fD~I~~~~~-l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~  163 (280)
T d1jqea_         118 KKELQKWDFIHMIQM-LYYVKDIPATLKFFHSLLGTNAKMLIIVVSG  163 (280)
T ss_dssp             SSSCCCEEEEEEESC-GGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             cCCCCceeEEEEccc-eecCCCHHHHHHHHHhhCCCCCEEEEEEecC
Confidence            788999999999998 9999999999999999999999998876543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=1.6e-12  Score=127.72  Aligned_cols=91  Identities=20%  Similarity=0.239  Sum_probs=67.9

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C-----CcEEeccCC----CCCCCCCceeE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K-----PLVISGEGH----RIPFDGNTFDF  171 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~-----~l~~~~da~----~LPf~D~SFD~  171 (518)
                      +++.+|||||||+|..+..|++.| .+|+|+|+|+.              .     ..+..++..    .+|+ +++||.
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~g-~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fd~  132 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEEG-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA-GDGFDA  132 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC-TTCEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHcC-CeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCC-CCCceE
Confidence            356799999999999999999988 58999999841              0     001122221    2233 568999


Q ss_pred             EEEcCceeeccCCh-------HHHHHHHHhcccCCcEEEEEec
Q 010086          172 VFVGGARLEKASKP-------LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       172 V~s~~~~l~~~~dp-------~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      |+|...+|+|++++       ..+++++.|+|||||++++.+.
T Consensus       133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence            99876348998754       3689999999999999999764

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.23  E-value=1.7e-11  Score=117.69  Aligned_cols=125  Identities=13%  Similarity=0.188  Sum_probs=88.7

Q ss_pred             CCCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC-----------CC--cEEeccCCCC-CCCCCceeEEEEcC
Q 010086          112 GYLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS-----------KP--LVISGEGHRI-PFDGNTFDFVFVGG  176 (518)
Q Consensus       112 gll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~-----------~~--l~~~~da~~L-Pf~D~SFD~V~s~~  176 (518)
                      ..++||++|||||||+|..+..+++.+ .+.|+|||+|+.           .+  ..+.+++... ++.+..+|++++..
T Consensus        70 l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~  149 (230)
T d1g8sa_          70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYE  149 (230)
T ss_dssp             CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeec
Confidence            357899999999999999998888853 368999999841           12  2345555544 57788888887776


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEEecCCC--cc-----CchhHhhhc--cCccEEEEeccCCCCC
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKD--EY-----SFNSFLDLF--NSCKLVKSRDIDGIDS  237 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~--~~-----s~~~~~~lf--~~~~~v~~~~v~~~~~  237 (518)
                      . ++|..++..++.++.|+|||||.+++......  ..     ......+.+  ..|+++......+|+-
T Consensus       150 ~-~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL~py~~  218 (230)
T d1g8sa_         150 D-VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEPFEK  218 (230)
T ss_dssp             C-CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECTTTST
T ss_pred             c-ccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCCCcC
Confidence            5 78888888999999999999999888753221  10     111122222  3578888777777754

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.22  E-value=1.2e-11  Score=117.00  Aligned_cols=122  Identities=16%  Similarity=0.157  Sum_probs=83.3

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-------------CCcEEeccCCCCCCCCC---ceeEEEEc
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGN---TFDFVFVG  175 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~---SFD~V~s~  175 (518)
                      .++||++|||||||+|..+..+++. +...|+|||+|+.             ....+.+++...+..+.   .+|+|++.
T Consensus        53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~  132 (209)
T d1nt2a_          53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD  132 (209)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEec
Confidence            4799999999999999999888874 4468999999852             11235677776655444   45555542


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEEecCC--CccC-----chhH-hhhccCccEEEEeccCCCCC
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVHVRAK--DEYS-----FNSF-LDLFNSCKLVKSRDIDGIDS  237 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~--~~~s-----~~~~-~~lf~~~~~v~~~~v~~~~~  237 (518)
                         +.|..++..+++|+.|+|||||.+++.+...  +...     .... ..+-..|+++......+|+-
T Consensus       133 ---~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~E~i~L~P~~~  199 (209)
T d1nt2a_         133 ---IAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKHGSLMPYHR  199 (209)
T ss_dssp             ---CCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEEECTTTCT
T ss_pred             ---ccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEEccCCCcc
Confidence               5666778889999999999999998875221  1110     0111 11225688888777777764

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.22  E-value=1.3e-11  Score=116.86  Aligned_cols=98  Identities=13%  Similarity=0.194  Sum_probs=76.6

Q ss_pred             HHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC---------------CCcEEeccCCCCCCCC
Q 010086          104 VFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS---------------KPLVISGEGHRIPFDG  166 (518)
Q Consensus       104 l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~D  166 (518)
                      ++..+++..-+++|++|||||||+|..+..+++. | ...|+++|+++.               ....+.+|+.+.++.+
T Consensus        63 ~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~  142 (213)
T d1dl5a1          63 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF  142 (213)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred             hhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccc
Confidence            3344444445899999999999999999888763 3 358999998741               1224578998888899


Q ss_pred             CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          167 NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       167 ~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      ++||.|++..+ ++|++      .++.|+|||||++++.++.
T Consensus       143 ~~fD~I~~~~~-~~~~p------~~l~~~LkpGG~lv~pv~~  177 (213)
T d1dl5a1         143 SPYDVIFVTVG-VDEVP------ETWFTQLKEGGRVIVPINL  177 (213)
T ss_dssp             CCEEEEEECSB-BSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred             cchhhhhhhcc-HHHhH------HHHHHhcCCCcEEEEEECc
Confidence            99999999987 88874      3578999999999987753

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.21  E-value=8.2e-12  Score=121.69  Aligned_cols=111  Identities=16%  Similarity=0.200  Sum_probs=79.7

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      .++|.+|||+|||+|..+.++++.| .+|+|+|+++.              ...+.+++... ++++++||+|+++.. .
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~g-~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~-~  194 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLY-A  194 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECC-H
T ss_pred             cCccCEEEEcccchhHHHHHHHhcC-CEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhccc-c
Confidence            5789999999999999999898888 68999999852              22345666554 467899999999753 3


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEE-ecCCCccCchhHhhhc--cCccEEEEeccC
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVH-VRAKDEYSFNSFLDLF--NSCKLVKSRDID  233 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~-~~~~~~~s~~~~~~lf--~~~~~v~~~~v~  233 (518)
                      +.   ....+.++.|+|||||++++. +...+.   ..+.+.+  ..++++....-+
T Consensus       195 ~~---l~~l~~~~~~~LkpGG~lilSgil~~~~---~~v~~~~~~~Gf~~~~~~~~~  245 (254)
T d2nxca1         195 EL---HAALAPRYREALVPGGRALLTGILKDRA---PLVREAMAGAGFRPLEEAAEG  245 (254)
T ss_dssp             HH---HHHHHHHHHHHEEEEEEEEEEEEEGGGH---HHHHHHHHHTTCEEEEEEEET
T ss_pred             cc---HHHHHHHHHHhcCCCcEEEEEecchhhH---HHHHHHHHHCCCEEEEEEEEC
Confidence            32   457789999999999999885 322221   2333333  346777666543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=2e-11  Score=119.63  Aligned_cols=102  Identities=16%  Similarity=0.208  Sum_probs=80.9

Q ss_pred             hHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC------------------CCcEEeccC
Q 010086          100 FYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS------------------KPLVISGEG  159 (518)
Q Consensus       100 ~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~------------------~~l~~~~da  159 (518)
                      .|+.-...++...-++||++|||+|||+|..+..|++. | .++|+++|+++.                  ...++.+|.
T Consensus        80 iypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~  159 (264)
T d1i9ga_          80 IYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL  159 (264)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred             cchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccc
Confidence            33333334455556899999999999999999888763 4 369999998731                  112467899


Q ss_pred             CCCCCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          160 HRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       160 ~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      .+.+|++++||.|+.      |+++|+.++.++.|+|||||.+++.+.
T Consensus       160 ~~~~~~~~~fDaV~l------dlp~P~~~l~~~~~~LkpGG~lv~~~P  201 (264)
T d1i9ga_         160 ADSELPDGSVDRAVL------DMLAPWEVLDAVSRLLVAGGVLMVYVA  201 (264)
T ss_dssp             GGCCCCTTCEEEEEE------ESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             ccccccCCCcceEEE------ecCCHHHHHHHHHhccCCCCEEEEEeC
Confidence            999999999999975      468999999999999999999988653

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.19  E-value=4.9e-11  Score=114.25  Aligned_cols=132  Identities=13%  Similarity=0.182  Sum_probs=91.6

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC-----------CCc--EEeccC---CCCCCCCCceeEEEE
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS-----------KPL--VISGEG---HRIPFDGNTFDFVFV  174 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~-----------~~l--~~~~da---~~LPf~D~SFD~V~s  174 (518)
                      .++||++|||+|||+|..+..|++. | .+.|+|+|+++.           ...  .+..|+   +..++..+++|+|++
T Consensus        70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~  149 (227)
T d1g8aa_          70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE
Confidence            4789999999999999999998873 4 469999999841           111  234444   444566789999998


Q ss_pred             cCceeeccCChHHHHHHHHhcccCCcEEEEEecCCC--cc-----CchhHhhh-ccCccEEEEeccCCCCCCccceeEEE
Q 010086          175 GGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKD--EY-----SFNSFLDL-FNSCKLVKSRDIDGIDSSLPYIREIV  246 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~--~~-----s~~~~~~l-f~~~~~v~~~~v~~~~~~~p~~~~vv  246 (518)
                      .   +.|..++..+++++.|+|||||++++.+....  ..     ......++ -..|+++....+.+|+-.  + ..++
T Consensus       150 d---~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~i~L~p~~~~--H-~~vv  223 (227)
T d1g8aa_         150 D---VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIERLNLEPYEKD--H-ALFV  223 (227)
T ss_dssp             C---CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEEEECTTTSSS--E-EEEE
T ss_pred             E---ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEEEEcCCCCCCc--e-EEEE
Confidence            4   45666778899999999999999988753221  10     01112222 346888888788777542  2 3566


Q ss_pred             Eeec
Q 010086          247 LKKE  250 (518)
Q Consensus       247 ~kK~  250 (518)
                      .||+
T Consensus       224 ~rK~  227 (227)
T d1g8aa_         224 VRKT  227 (227)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            7764

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.3e-12  Score=126.49  Aligned_cols=101  Identities=14%  Similarity=0.132  Sum_probs=79.7

Q ss_pred             HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC------------------------CCcEEec
Q 010086          103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS------------------------KPLVISG  157 (518)
Q Consensus       103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~------------------------~~l~~~~  157 (518)
                      ..+.++++..-+++++++||||||+|..+..+++ .|...++|||+++.                        ...++++
T Consensus       138 ~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g  217 (328)
T d1nw3a_         138 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  217 (328)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred             HHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence            3445555666689999999999999999976654 56678999999841                        1235789


Q ss_pred             cCCCCCCCCCce--eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          158 EGHRIPFDGNTF--DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       158 da~~LPf~D~SF--D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |+.++||.+..|  |+|++..  +.|.+++..++.|+.|+|||||.+++.
T Consensus       218 d~~~~~~~~~~~~advi~~~~--~~f~~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         218 DFLSEEWRERIANTSVIFVNN--FAFGPEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             CTTSHHHHHHHHHCSEEEECC--TTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cccccccccccCcceEEEEcc--eecchHHHHHHHHHHHhCCCCcEEEEe
Confidence            999999998877  5677654  567677789999999999999998874

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.15  E-value=3.2e-11  Score=111.12  Aligned_cols=89  Identities=17%  Similarity=0.162  Sum_probs=74.4

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      .++++++|||+|||+|..+..+++.+ .+|+|+|+++.                ...++++|+.++++++.+||.|++..
T Consensus        30 ~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~  108 (186)
T d1l3ia_          30 EPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG  108 (186)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred             CCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeC
Confidence            47899999999999999998888765 79999999841                12356899999999999999999976


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      . .+   +....++++.+.|||||++++..
T Consensus       109 ~-~~---~~~~~~~~~~~~LkpgG~lvi~~  134 (186)
T d1l3ia_         109 S-GG---ELQEILRIIKDKLKPGGRIIVTA  134 (186)
T ss_dssp             C-TT---CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             c-cc---cchHHHHHHHHHhCcCCEEEEEe
Confidence            4 43   35688999999999999988864

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=5.7e-11  Score=118.91  Aligned_cols=89  Identities=16%  Similarity=0.022  Sum_probs=72.8

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCc--
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGA--  177 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~--  177 (518)
                      .++.+|||||||+|.++..+++.|...|+|+|.++.               ...++.++.+++++++++||+|++...  
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~  116 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY  116 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence            367899999999999999888898779999998851               122468999999999999999999653  


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEE
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAV  203 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lv  203 (518)
                      .+.+......++.++.|+|||||+++
T Consensus       117 ~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         117 FLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeccchhHHHHHHHHHhccCCCeEEE
Confidence            13444456788999999999999864

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.13  E-value=8.3e-11  Score=113.29  Aligned_cols=95  Identities=14%  Similarity=0.089  Sum_probs=71.5

Q ss_pred             HHHcCCCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeE
Q 010086          108 LISEGYLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDF  171 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~  171 (518)
                      +.+..-+....+|||||||+|..+..+.+.. ...++++|+.+.               ...++.+|..+ +.+ ++||+
T Consensus        72 ~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~~-~~~D~  149 (253)
T d1tw3a2          72 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP-RKADA  149 (253)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-SCEEE
T ss_pred             HHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchh-hcc-cchhh
Confidence            3333345677899999999999998887753 468999997420               11245677644 333 57999


Q ss_pred             EEEcCceeeccCChH--HHHHHHHhcccCCcEEEEE
Q 010086          172 VFVGGARLEKASKPL--DFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       172 V~s~~~~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |++..+ |||++++.  +++++++|+|||||.++|.
T Consensus       150 v~~~~v-lh~~~d~~~~~~L~~~~~~LkPGG~l~i~  184 (253)
T d1tw3a2         150 IILSFV-LLNWPDHDAVRILTRCAEALEPGGRILIH  184 (253)
T ss_dssp             EEEESC-GGGSCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eeeccc-cccCCchhhHHHHHHHHHhcCCCcEEEEE
Confidence            999998 99998764  6799999999999998886

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=7.3e-11  Score=112.59  Aligned_cols=90  Identities=23%  Similarity=0.331  Sum_probs=72.7

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC--------------------CCcEEeccCCCCCCCCCcee
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS--------------------KPLVISGEGHRIPFDGNTFD  170 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~--------------------~~l~~~~da~~LPf~D~SFD  170 (518)
                      .+++|++|||||||+|..+..|++. | ...|+++|+++.                    ...+..+|+...++++++||
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD  152 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD  152 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence            3689999999999999988777763 3 468999998731                    11245789999999999999


Q ss_pred             EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      .|++..+ +++++      .++.+.|||||++++.+...
T Consensus       153 ~I~~~~~-~~~ip------~~l~~~LkpGG~LV~pv~~~  184 (224)
T d1i1na_         153 AIHVGAA-APVVP------QALIDQLKPGGRLILPVGPA  184 (224)
T ss_dssp             EEEECSB-BSSCC------HHHHHTEEEEEEEEEEESCT
T ss_pred             hhhhhcc-hhhcC------HHHHhhcCCCcEEEEEEccC
Confidence            9999987 88764      35789999999999987543

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.12  E-value=3.7e-11  Score=113.28  Aligned_cols=91  Identities=14%  Similarity=0.097  Sum_probs=71.5

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCCC--CCCCceeEEEEcCc
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRIP--FDGNTFDFVFVGGA  177 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~LP--f~D~SFD~V~s~~~  177 (518)
                      ++..|||||||+|..+..|++. ....++|||++..               ...++.+|+..++  |+++++|.|++.+.
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp  108 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  108 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence            4558999999999999888775 3468999998731               1235689998886  89999999998774


Q ss_pred             eeeccCCh--------HHHHHHHHhcccCCcEEEEEec
Q 010086          178 RLEKASKP--------LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       178 ~l~~~~dp--------~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                       ..|...+        ..++++++|+|||||.+.+.+.
T Consensus       109 -~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD  145 (204)
T d2fcaa1         109 -DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD  145 (204)
T ss_dssp             -CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred             -cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence             4443322        3689999999999999999874

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.2e-11  Score=117.10  Aligned_cols=100  Identities=13%  Similarity=-0.028  Sum_probs=70.6

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------CC-c-------------------
Q 010086          105 FQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------KP-L-------------------  153 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------~~-l-------------------  153 (518)
                      +.++...|. ..|.++||||||+|.........++.+|+|+|.|+.           .+ .                   
T Consensus        44 ~~~~f~~g~-~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  122 (263)
T d2g72a1          44 LAQTFATGE-VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGEC  122 (263)
T ss_dssp             HHHHHHTSC-SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCC
T ss_pred             HHHHcCCCC-CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccch
Confidence            334444443 457899999999997764444344578999999841           00 0                   


Q ss_pred             --------------EEecc------CCCCCCCCCceeEEEEcCceeeccC----ChHHHHHHHHhcccCCcEEEEEe
Q 010086          154 --------------VISGE------GHRIPFDGNTFDFVFVGGARLEKAS----KPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       154 --------------~~~~d------a~~LPf~D~SFD~V~s~~~~l~~~~----dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                                    ....|      ....++++++||+|++.++ +||+.    ++.++++++.|+|||||++++..
T Consensus       123 ~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~-l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~  198 (263)
T d2g72a1         123 WQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFC-LEAVSPDLASFQRALDHITTLLRPGGHLLLIG  198 (263)
T ss_dssp             HHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHH-HHHHccCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence                          01112      2334577889999999997 99985    45688999999999999998864

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=1.9e-10  Score=114.48  Aligned_cols=89  Identities=17%  Similarity=0.083  Sum_probs=72.5

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      .+|.+|||||||+|..+..+++.|..+|+|+|.++.               ...+++++.+++++++++||+|++... .
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~-~  110 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM-G  110 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC-B
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeee-e
Confidence            367899999999999998888888778999998752               122468999999999999999998653 3


Q ss_pred             ecc---CChHHHHHHHHhcccCCcEEEE
Q 010086          180 EKA---SKPLDFASEIVRTLKPEGFAVV  204 (518)
Q Consensus       180 ~~~---~dp~~~l~Ei~RVLKPGG~lvi  204 (518)
                      +++   .....++.++.|.|||||.++-
T Consensus       111 ~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         111 YCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            333   3457889999999999998753

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.6e-10  Score=111.94  Aligned_cols=90  Identities=11%  Similarity=-0.006  Sum_probs=72.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      +.++.+|||||||+|.++..+++.|...|+|+|.++.               ...++.++.+++++++++||+|+|... 
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~-  111 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM-  111 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC-
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee-
Confidence            3478899999999999999898888779999999852               123568999999999999999999653 


Q ss_pred             eeccC---ChHHHHHHHHhcccCCcEEEE
Q 010086          179 LEKAS---KPLDFASEIVRTLKPEGFAVV  204 (518)
Q Consensus       179 l~~~~---dp~~~l~Ei~RVLKPGG~lvi  204 (518)
                      .++..   .+..++....|.|||||+++-
T Consensus       112 ~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         112 GYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             BTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             eeecccccccHHHHHHHHhcCCCCcEEec
Confidence            33333   244677778999999998763

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.02  E-value=1.6e-10  Score=112.10  Aligned_cols=92  Identities=13%  Similarity=0.110  Sum_probs=70.8

Q ss_pred             HHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----------------CCcEEeccCCCCCCCCCce
Q 010086          108 LISEGYLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTF  169 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SF  169 (518)
                      ++...-++||++|||+|||+|..+..|++. | .+.|+++|.++.                ...+..+|..+. +++++|
T Consensus        77 Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~f  155 (250)
T d1yb2a1          77 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMY  155 (250)
T ss_dssp             ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCE
T ss_pred             HHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-ccccee
Confidence            344456899999999999999999888763 3 469999998731                112356777665 678999


Q ss_pred             eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          170 DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      |.|+.      ++++|..++.++.|+|||||++++.+
T Consensus       156 D~V~l------d~p~p~~~l~~~~~~LKpGG~lv~~~  186 (250)
T d1yb2a1         156 DAVIA------DIPDPWNHVQKIASMMKPGSVATFYL  186 (250)
T ss_dssp             EEEEE------CCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             eeeee------cCCchHHHHHHHHHhcCCCceEEEEe
Confidence            99986      34689999999999999999998864

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.96  E-value=8.6e-10  Score=105.24  Aligned_cols=90  Identities=18%  Similarity=0.149  Sum_probs=71.5

Q ss_pred             CCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          112 GYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       112 gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      .-++++++|||||||+|..+..|++.+ .+|+++|+++.             ...++.+|...-..+++.||.|++..+ 
T Consensus        66 L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a-  143 (224)
T d1vbfa_          66 LDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWAT-  143 (224)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSB-
T ss_pred             hhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcc-
Confidence            347999999999999999998888886 79999998631             123467787665556788999999887 


Q ss_pred             eeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          179 LEKASKPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      +++++      .++.+.|||||++++.++..
T Consensus       144 ~~~ip------~~l~~qLk~GGrLV~pvg~~  168 (224)
T d1vbfa_         144 APTLL------CKPYEQLKEGGIMILPIGVG  168 (224)
T ss_dssp             BSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred             hhhhh------HHHHHhcCCCCEEEEEEcCC
Confidence            88764      34668899999999987643

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.96  E-value=7.7e-10  Score=104.04  Aligned_cols=91  Identities=16%  Similarity=0.136  Sum_probs=69.4

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCCC--CCCCceeEEEEcCc
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRIP--FDGNTFDFVFVGGA  177 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~LP--f~D~SFD~V~s~~~  177 (518)
                      ....+||||||+|..+..+++. +-..++|||++..               ...++.+|+..++  |+++++|.|++.+-
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP  110 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  110 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence            3457999999999999888875 3468999998731               1234688998886  89999999988652


Q ss_pred             eeeccCC--------hHHHHHHHHhcccCCcEEEEEec
Q 010086          178 RLEKASK--------PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       178 ~l~~~~d--------p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                       -.|...        ...++++++|+|||||.+.+.+.
T Consensus       111 -dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD  147 (204)
T d1yzha1         111 -DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  147 (204)
T ss_dssp             -CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             -ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence             222111        14689999999999999999774

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.95  E-value=1.1e-09  Score=105.89  Aligned_cols=90  Identities=21%  Similarity=0.098  Sum_probs=68.0

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC-------------C--CcEEeccCCCCCCCCCceeEEEEcC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS-------------K--PLVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~-------------~--~l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      -++...+|||||||+|..+..+++.. ..+++++|+.+.             .  ..++.+|... |.|. .||+|++..
T Consensus        78 d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p~-~~D~v~~~~  155 (256)
T d1qzza2          78 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSF  155 (256)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEES
T ss_pred             CCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccc-cccc-cchhhhccc
Confidence            35667899999999999998888753 358999997420             1  1133455443 5554 599999999


Q ss_pred             ceeeccCChH--HHHHHHHhcccCCcEEEEE
Q 010086          177 ARLEKASKPL--DFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       177 ~~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~  205 (518)
                      + |||++++.  +++++++|+|||||+++|.
T Consensus       156 v-Lh~~~d~~~~~lL~~i~~~LkpgG~llI~  185 (256)
T d1qzza2         156 V-LLNWSDEDALTILRGCVRALEPGGRLLVL  185 (256)
T ss_dssp             C-GGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             c-ccccCcHHHHHHHHHHHhhcCCcceeEEE
Confidence            8 99998764  6799999999999998876

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=3e-10  Score=117.30  Aligned_cols=105  Identities=11%  Similarity=0.036  Sum_probs=75.5

Q ss_pred             hhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCCC----------------------C---
Q 010086           99 NFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSSK----------------------P---  152 (518)
Q Consensus        99 ~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~~----------------------~---  152 (518)
                      |....++.+++++..+++++++||||||+|..+..++. .|..+++|||+++..                      .   
T Consensus       199 El~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~  278 (406)
T d1u2za_         199 ELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE  278 (406)
T ss_dssp             CBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred             cCCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccce
Confidence            44556666667777789999999999999999977765 576789999998421                      0   


Q ss_pred             cEEeccCCCCCCCC---CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          153 LVISGEGHRIPFDG---NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       153 l~~~~da~~LPf~D---~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ....++....++.+   ..+|+|++.+  +.|.++....+.|+.|+|||||.++..
T Consensus       279 ~~~~~~f~~~~~~d~~~~~adVV~inn--~~f~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         279 FSLKKSFVDNNRVAELIPQCDVILVNN--FLFDEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             EEESSCSTTCHHHHHHGGGCSEEEECC--TTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             eeeeechhhccccccccccceEEEEec--ccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence            01233333333322   2467888865  566667788999999999999998763

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.83  E-value=3e-09  Score=103.83  Aligned_cols=93  Identities=13%  Similarity=0.109  Sum_probs=71.0

Q ss_pred             HHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC--------------CCc--EEeccCCCCCCCCCc
Q 010086          107 DLISEGYLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS--------------KPL--VISGEGHRIPFDGNT  168 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~--------------~~l--~~~~da~~LPf~D~S  168 (518)
                      -++...-+++|.+|||+|||+|..+..|++. | .++|+++|+++.              ...  +..+|. ..+|++..
T Consensus        94 ~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~-~~~~~~~~  172 (266)
T d1o54a_          94 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI-SEGFDEKD  172 (266)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG-GGCCSCCS
T ss_pred             HHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc-cccccccc
Confidence            3445556899999999999999999888763 3 368999999841              011  223443 23578888


Q ss_pred             eeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          169 FDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ||.|+.      ++++|..++.++.|+|||||.+++..
T Consensus       173 ~D~V~~------d~p~p~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         173 VDALFL------DVPDPWNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             EEEEEE------CCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             eeeeEe------cCCCHHHHHHHHHhhcCCCCEEEEEe
Confidence            998754      56899999999999999999998865

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=6.6e-09  Score=104.15  Aligned_cols=91  Identities=19%  Similarity=0.098  Sum_probs=66.9

Q ss_pred             HcCCCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC------------------------C--CcEEeccCCC
Q 010086          110 SEGYLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS------------------------K--PLVISGEGHR  161 (518)
Q Consensus       110 ~~gll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~------------------------~--~l~~~~da~~  161 (518)
                      ...-++||++|||+|||+|.++..|++. | .+.|+++|+++.                        .  ..+..+|...
T Consensus        92 ~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~  171 (324)
T d2b25a1          92 SMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISG  171 (324)
T ss_dssp             HHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTC
T ss_pred             HHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhh
Confidence            3335899999999999999999888863 4 368999998631                        1  1234667666


Q ss_pred             CC--CCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          162 IP--FDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       162 LP--f~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ..  +++++||.|+.      ++++|+.++.++.|+|||||++++-+
T Consensus       172 ~~~~~~~~~fD~V~L------D~p~P~~~l~~~~~~LKpGG~lv~~~  212 (324)
T d2b25a1         172 ATEDIKSLTFDAVAL------DMLNPHVTLPVFYPHLKHGGVCAVYV  212 (324)
T ss_dssp             CC-------EEEEEE------CSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             cccccCCCCcceEee------cCcCHHHHHHHHHHhccCCCEEEEEe
Confidence            54  46889999875      34779999999999999999988855

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.69  E-value=2e-08  Score=95.36  Aligned_cols=90  Identities=22%  Similarity=0.330  Sum_probs=70.4

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc----CC---CcEEEEecCCC--------------------CCcEEeccCCCCCCC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI----GV---EDSIGIFKKSS--------------------KPLVISGEGHRIPFD  165 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~----g~---~~v~gID~s~~--------------------~~l~~~~da~~LPf~  165 (518)
                      -++++.+|||||||+|..+..|++.    |.   .+|++||..+.                    ...++.+|+.+...+
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~  156 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP  156 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence            3789999999999999998777653    21   37999997631                    123567898888788


Q ss_pred             CCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          166 GNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       166 D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      ++.||.|++..+ ++++++      .+.+.|||||++++.++..
T Consensus       157 ~~~fD~Iiv~~a-~~~~p~------~l~~~Lk~gG~lV~pvg~~  193 (223)
T d1r18a_         157 NAPYNAIHVGAA-APDTPT------ELINQLASGGRLIVPVGPD  193 (223)
T ss_dssp             GCSEEEEEECSC-BSSCCH------HHHHTEEEEEEEEEEESCS
T ss_pred             ccceeeEEEEee-chhchH------HHHHhcCCCcEEEEEEecC
Confidence            899999999987 777642      4678999999999987643

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.65  E-value=2.2e-08  Score=94.69  Aligned_cols=89  Identities=22%  Similarity=0.241  Sum_probs=71.3

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCC---------------CCCcEEeccCCCCCCCCCceeEEEEcC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKS---------------SKPLVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~---------------~~~l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      -++++++|||||||+|..+..|++. | ..|++||..+               ....++.+|+.+...+++.||.|++..
T Consensus        75 ~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~  153 (215)
T d1jg1a_          75 NLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTA  153 (215)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred             ccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeec
Confidence            4899999999999999999888875 5 6799999863               123456899888777889999999988


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      + .+++++  .    +..-|||||++++.++..
T Consensus       154 a-~~~ip~--~----l~~qL~~gGrLv~pv~~~  179 (215)
T d1jg1a_         154 G-APKIPE--P----LIEQLKIGGKLIIPVGSY  179 (215)
T ss_dssp             B-BSSCCH--H----HHHTEEEEEEEEEEECSS
T ss_pred             c-cccCCH--H----HHHhcCCCCEEEEEEccC
Confidence            7 777643  3    456799999999987543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.31  E-value=1.7e-07  Score=83.19  Aligned_cols=91  Identities=15%  Similarity=0.167  Sum_probs=63.5

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCC-CCCCCCceeEEEEcCce
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHR-IPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~-LPf~D~SFD~V~s~~~~  178 (518)
                      .|.+|||+|||+|.+.......|..+|+++|.++.                ...++++|+.+ ++...+.||+|++.-- 
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP-   92 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP-   92 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS-
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh-
Confidence            58899999999999986666678789999998731                12346777766 4567899999998531 


Q ss_pred             eeccCChHHHHHHH--HhcccCCcEEEEEecC
Q 010086          179 LEKASKPLDFASEI--VRTLKPEGFAVVHVRA  208 (518)
Q Consensus       179 l~~~~dp~~~l~Ei--~RVLKPGG~lvi~~~~  208 (518)
                      +.. ..-...+..+  .+.|+|||++++....
T Consensus        93 y~~-~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          93 YAK-ETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             SHH-HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             hcc-chHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            110 0012334333  4789999999997643

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.30  E-value=5.4e-07  Score=87.15  Aligned_cols=86  Identities=14%  Similarity=0.140  Sum_probs=68.0

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGA  177 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~  177 (518)
                      +++|.+|||+|||+|.++..+++.|..+|+++|+++.                ...+.++|+..++- .+.||.|++.. 
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~-  182 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY-  182 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC-
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECC-
Confidence            5789999999999999998777777679999999841                12346889888754 57899999864 


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                       ..   ....++.++.++|||||++.+.
T Consensus       183 -p~---~~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         183 -VV---RTHEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             -CS---SGGGGHHHHHHHEEEEEEEEEE
T ss_pred             -CC---chHHHHHHHHhhcCCCCEEEEE
Confidence             22   2456789999999999998664

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=1.9e-06  Score=83.95  Aligned_cols=94  Identities=13%  Similarity=0.168  Sum_probs=67.9

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086          115 SQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~  178 (518)
                      ..+.+|||+|||+|..+..++. ..-..|+|+|+|+.               ...++++|..+ +++++.||+|+|+--+
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPY  185 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPY  185 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCC
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchh
Confidence            4567999999999999987765 44579999999841               12345676544 5778899999997421


Q ss_pred             ee------------ccC------------ChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          179 LE------------KAS------------KPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       179 l~------------~~~------------dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      +.            |-+            ...+.+.++.+.|+|||.+++.++..
T Consensus       186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~  240 (274)
T d2b3ta1         186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ  240 (274)
T ss_dssp             BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS
T ss_pred             hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECch
Confidence            21            100            11247799999999999999988654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.24  E-value=2.9e-07  Score=91.69  Aligned_cols=96  Identities=19%  Similarity=0.220  Sum_probs=68.5

Q ss_pred             CCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCC----CCCCCCceeE
Q 010086          112 GYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHR----IPFDGNTFDF  171 (518)
Q Consensus       112 gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~----LPf~D~SFD~  171 (518)
                      .++++|.+|||++||+|..+..++..|..+|+++|+++.                ...++++|+.+    ++..+..||+
T Consensus       141 ~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~  220 (324)
T d2as0a2         141 KWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDI  220 (324)
T ss_dssp             GGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCc
Confidence            346789999999999999998887777679999999841                11245666543    4456789999


Q ss_pred             EEEcCceee-ccC-------ChHHHHHHHHhcccCCcEEEEEec
Q 010086          172 VFVGGARLE-KAS-------KPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       172 V~s~~~~l~-~~~-------dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      |++.--.+- +-.       +-.+.+..+.++|||||+++..+.
T Consensus       221 Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~  264 (324)
T d2as0a2         221 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  264 (324)
T ss_dssp             EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             hhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            998541111 100       112467888999999999888753

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.18  E-value=1.3e-06  Score=80.56  Aligned_cols=42  Identities=24%  Similarity=0.288  Sum_probs=35.4

Q ss_pred             CCCCCceeEEEEcCceeeccCCh--HHHHHHHHhcccCCcEEEEE
Q 010086          163 PFDGNTFDFVFVGGARLEKASKP--LDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       163 Pf~D~SFD~V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +.+.+.||+|+|.++ |.++..+  .++++.+++.|||||++++.
T Consensus       127 ~~~~~~fDvI~CRNV-LiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         127 YNVPGPFDAIFCRNV-MIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             CCCCCCEEEEEECSS-GGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             cCCCCCccEEEeehh-HHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            345688999999998 8888765  47899999999999988864

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.15  E-value=4.3e-06  Score=79.90  Aligned_cols=96  Identities=13%  Similarity=0.100  Sum_probs=69.0

Q ss_pred             HHHHHcCC-CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCC--------CCCcEEeccCCCCCCCCCceeEEEEc
Q 010086          106 QDLISEGY-LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKS--------SKPLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       106 ~~L~~~gl-l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~--------~~~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      ..+.+.-. .+...+|||||||+|..+.++.+. +-.+++..|+-.        ....++.+|..+ |.|  ..|+++..
T Consensus        70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~-~~p--~~D~~~l~  146 (244)
T d1fp1d2          70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFA-SVP--QGDAMILK  146 (244)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCC--CEEEEEEE
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCccc-ccc--cceEEEEe
Confidence            34444333 456689999999999999887764 345888899631        012234566543 455  34999999


Q ss_pred             CceeeccCChH--HHHHHHHhcccCCcEEEEE
Q 010086          176 GARLEKASKPL--DFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       176 ~~~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .+ ||++++..  +.++.+++.|+|||.++|.
T Consensus       147 ~v-Lh~~~de~~~~iL~~~~~aL~pgg~llI~  177 (244)
T d1fp1d2         147 AV-CHNWSDEKCIEFLSNCHKALSPNGKVIIV  177 (244)
T ss_dssp             SS-GGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hh-hhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            98 99987654  6789999999999998775

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.09  E-value=4e-07  Score=90.47  Aligned_cols=91  Identities=14%  Similarity=0.192  Sum_probs=64.3

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCC----CCCCCCceeEEEEcC
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHR----IPFDGNTFDFVFVGG  176 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~----LPf~D~SFD~V~s~~  176 (518)
                      +|.+|||++||+|..+.+++.. ..+|+++|+|+.               ...++++|+.+    ++...++||+|++.-
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp  223 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP  223 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence            6889999999999999888754 479999999841               12245666543    455678999999753


Q ss_pred             ceeecc--------CChHHHHHHHHhcccCCcEEEEEec
Q 010086          177 ARLEKA--------SKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       177 ~~l~~~--------~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      -.+..-        .+-.+.+..+.++|||||+++..+-
T Consensus       224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            111111        1112467889999999999888753

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.09  E-value=1.9e-06  Score=79.66  Aligned_cols=103  Identities=16%  Similarity=0.048  Sum_probs=71.6

Q ss_pred             HHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC------------C--CcEEeccCCCC-----C
Q 010086          104 VFQDLISEGYLSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS------------K--PLVISGEGHRI-----P  163 (518)
Q Consensus       104 l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~------------~--~l~~~~da~~L-----P  163 (518)
                      +++++++.--++++..+||++||+|..+.++.+ .+...++|+|.++.            .  ..+++++..++     .
T Consensus        11 ll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~   90 (192)
T d1m6ya2          11 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT   90 (192)
T ss_dssp             THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred             HHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence            334444443568899999999999998877665 44479999998731            1  12345555443     4


Q ss_pred             CCCCceeEEEEcCcee---------eccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          164 FDGNTFDFVFVGGARL---------EKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       164 f~D~SFD~V~s~~~~l---------~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +..++||.|+.-.+ +         +.+.+..+.+.++.++|||||.+++...
T Consensus        91 ~~~~~vdgIl~DlG-vSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f  142 (192)
T d1m6ya2          91 LGIEKVDGILMDLG-VSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF  142 (192)
T ss_dssp             TTCSCEEEEEEECS-CCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred             cCCCCcceeeeccc-hhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence            56789999986543 3         2233445788999999999999887653

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.08  E-value=4.4e-06  Score=77.54  Aligned_cols=70  Identities=10%  Similarity=0.100  Sum_probs=52.3

Q ss_pred             HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------CCcEEeccCCCCCCCCCceeEE
Q 010086          103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------KPLVISGEGHRIPFDGNTFDFV  172 (518)
Q Consensus       103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------~~l~~~~da~~LPf~D~SFD~V  172 (518)
                      .++..+...+-+ .|.+|||+|||+|.++..+...|...|+|+|+++.          ...++.+|..++|   +.||.|
T Consensus        36 ~~~~~~~~~~dl-~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~V  111 (197)
T d1ne2a_          36 YFLIEIYNDGNI-GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTW  111 (197)
T ss_dssp             HHHHHHHHHTSS-BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEE
T ss_pred             HHHHHHHHcCCC-CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEE
Confidence            333333344444 58899999999999988887788778999999741          2346788888764   789999


Q ss_pred             EEcC
Q 010086          173 FVGG  176 (518)
Q Consensus       173 ~s~~  176 (518)
                      +++-
T Consensus       112 i~NP  115 (197)
T d1ne2a_         112 IMNP  115 (197)
T ss_dssp             EECC
T ss_pred             EeCc
Confidence            9974

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=1e-05  Score=73.64  Aligned_cols=113  Identities=12%  Similarity=0.068  Sum_probs=74.0

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCC-CCCCCCceeEEEEcCcee
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHR-IPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~-LPf~D~SFD~V~s~~~~l  179 (518)
                      .+.++||++||+|.........|...|+.||.++.               ...++++|+.+ +.-.+..||+||+.-= +
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPP-Y  121 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP-F  121 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS-S
T ss_pred             chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCc-c
Confidence            56799999999999997666678789999998731               11244566543 3446789999999642 1


Q ss_pred             eccCChHHHHHHHH--hcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCCC
Q 010086          180 EKASKPLDFASEIV--RTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSS  238 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~--RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~  238 (518)
                      .. ....+.+.-+.  ..|+|+|++++.......     +..+..++++++.+.   |+.+
T Consensus       122 ~~-~~~~~~l~~l~~~~~L~~~~iIiiE~~~~~~-----~~~~~~~~~i~k~k~---yG~t  173 (183)
T d2fpoa1         122 RR-GLLEETINLLEDNGWLADEALIYVESEVENG-----LPTVPANWSLHREKV---AGQV  173 (183)
T ss_dssp             ST-TTHHHHHHHHHHTTCEEEEEEEEEEEEGGGC-----SCCCCTTEEEEEEEE---ETTE
T ss_pred             cc-chHHHHHHHHHHCCCCCCCeEEEEEecCcCC-----cccCCCCcEEEEEEE---eCcE
Confidence            21 22334454444  479999999997643321     112235677777666   5544

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=6.1e-05  Score=68.51  Aligned_cols=134  Identities=19%  Similarity=0.156  Sum_probs=84.4

Q ss_pred             cCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cC-CCcEEEEecCCCCC----cEEeccCCCC
Q 010086           89 YTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKE-IG-VEDSIGIFKKSSKP----LVISGEGHRI  162 (518)
Q Consensus        89 w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g-~~~v~gID~s~~~~----l~~~~da~~L  162 (518)
                      |+|+.|-|-.|.    -+   ...+++++.+||||||++|..++.+.+ .+ ...++|+|+.+-.+    .++++|....
T Consensus         2 yrsRaafKL~EI----~~---k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~~~~~~d~~~~   74 (180)
T d1ej0a_           2 LRSRAWFKLDEI----QQ---SDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDE   74 (180)
T ss_dssp             CSCHHHHHHHHH----HH---HHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSH
T ss_pred             chhHHHHHHHHH----HH---HhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCceEeecccccc
Confidence            567766664332    21   235789999999999999999987765 23 46899999976432    1345544331


Q ss_pred             --------CCCCCceeEEEEcCceeeccCCh-----------HHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhc-c
Q 010086          163 --------PFDGNTFDFVFVGGARLEKASKP-----------LDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLF-N  222 (518)
Q Consensus       163 --------Pf~D~SFD~V~s~~~~l~~~~dp-----------~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf-~  222 (518)
                              -+..+.||+|+|-.+ ..-.-+.           ..++.-+.++|||||.+++=+-....  ...+..+. +
T Consensus        75 ~~~~~~~~~~~~~~~DlVlSD~a-p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~--~~~l~~~l~~  151 (180)
T d1ej0a_          75 LVMKALLERVGDSKVQVVMSDMA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG--FDEYLREIRS  151 (180)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT--HHHHHHHHHH
T ss_pred             hhhhhhhhhccCcceeEEEeccc-chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc--HHHHHHHHHh
Confidence                    124567999999875 3221111           13456678999999999996433322  23343332 4


Q ss_pred             CccEEEEecc
Q 010086          223 SCKLVKSRDI  232 (518)
Q Consensus       223 ~~~~v~~~~v  232 (518)
                      .|+-|++.++
T Consensus       152 ~F~~V~~~KP  161 (180)
T d1ej0a_         152 LFTKVKVRKP  161 (180)
T ss_dssp             HEEEEEEECC
T ss_pred             hcCEEEEECC
Confidence            4666776664

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=97.91  E-value=3.8e-06  Score=83.30  Aligned_cols=94  Identities=7%  Similarity=0.035  Sum_probs=65.5

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------------CCcEEeccCCC----CCCCCCceeEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------------KPLVISGEGHR----IPFDGNTFDFV  172 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------------~~l~~~~da~~----LPf~D~SFD~V  172 (518)
                      +.+|.+|||+.||+|.++..++..|...|+++|+++.                 ...++++|+..    +.-..+.||+|
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            5688999999999999998777777678999999852                 01245666532    12245789999


Q ss_pred             EEcCceee----cc----CChHHHHHHHHhcccCCcEEEEEec
Q 010086          173 FVGGARLE----KA----SKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       173 ~s~~~~l~----~~----~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++.-=.|.    ..    .+-.+.++.+.++|||||++++.+.
T Consensus       222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            97421011    11    1123577888999999999998764

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.84  E-value=5.4e-05  Score=71.65  Aligned_cols=96  Identities=14%  Similarity=0.067  Sum_probs=65.2

Q ss_pred             HHHHHcC-CCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC--------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086          106 QDLISEG-YLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS--------KPLVISGEGHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       106 ~~L~~~g-ll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~--------~~l~~~~da~~LPf~D~SFD~V~s~  175 (518)
                      ..+...- ..+...+|||||||+|..+..+.+. .-.++++.|+.+-        ....+.+|..+ |.|.+  |+++..
T Consensus        70 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~-~~P~a--d~~~l~  146 (243)
T d1kyza2          70 KKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFV-SIPKA--DAVFMK  146 (243)
T ss_dssp             HHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTT-CCCCC--SCEECS
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccc-cCCCc--ceEEEE
Confidence            3444432 2344578999999999999888764 3468999998431        01134556532 44543  556666


Q ss_pred             CceeeccCCh--HHHHHHHHhcccCCcEEEEE
Q 010086          176 GARLEKASKP--LDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       176 ~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .. +|+.++.  .+.++++.+.|||||.++|.
T Consensus       147 ~v-lh~~~d~~~~~iL~~~~~al~pgg~~li~  177 (243)
T d1kyza2         147 WI-CHDWSDEHCLKFLKNCYEALPDNGKVIVA  177 (243)
T ss_dssp             SS-STTSCHHHHHHHHHHHHHHCCSSSCEEEE
T ss_pred             EE-eecCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence            76 8877654  36899999999999987775

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=97.84  E-value=2.1e-05  Score=70.82  Aligned_cols=90  Identities=12%  Similarity=0.112  Sum_probs=58.8

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCC----CCCCCCCceeEEEEc
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGH----RIPFDGNTFDFVFVG  175 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~----~LPf~D~SFD~V~s~  175 (518)
                      +..+.+|||+|||+|..+......| .+++++|.++.              ...+...++.    .....+.+||+|++.
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~g-a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D  117 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASEG-WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA  117 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTT-CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ccCCCeEEEeccccchhhhhhhhcc-chhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence            5678899999999999887776777 58999998741              1122323322    223466789999985


Q ss_pred             CceeeccCChHHHHHHH--HhcccCCcEEEEEec
Q 010086          176 GARLEKASKPLDFASEI--VRTLKPEGFAVVHVR  207 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei--~RVLKPGG~lvi~~~  207 (518)
                      -= ++ . +..+.+.++  ...|+|||++++...
T Consensus       118 PP-Y~-~-~~~~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         118 PP-YA-M-DLAALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             CC-TT-S-CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             cc-cc-c-CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence            31 11 1 112233333  358999999988754

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.81  E-value=6.3e-06  Score=77.16  Aligned_cols=87  Identities=14%  Similarity=0.197  Sum_probs=61.1

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----------------CCcEEeccCCCC------CCCCCceeE
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----------------KPLVISGEGHRI------PFDGNTFDF  171 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----------------~~l~~~~da~~L------Pf~D~SFD~  171 (518)
                      +..+||++|||+|..+..|++. + .++++++|+++.                ...++.|++.+.      .+..++||+
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~  135 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  135 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence            4469999999999999888763 2 268999998741                122456665442      256789999


Q ss_pred             EEEcCceeeccCChHHHHHHHHhcccCCcEEEE
Q 010086          172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVV  204 (518)
Q Consensus       172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi  204 (518)
                      ||.-+.  +....+...+.|..|.|||||++++
T Consensus       136 ifiD~~--~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         136 VFLDHW--KDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             EEECSC--GGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             eeeccc--ccccccHHHHHHHhCccCCCcEEEE
Confidence            998652  2211223457888999999998876

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=97.76  E-value=6e-05  Score=72.95  Aligned_cols=123  Identities=12%  Similarity=0.127  Sum_probs=77.1

Q ss_pred             CCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C-C-cEEeccCCC-CCCCCCceeEEEEcCcee
Q 010086          117 SAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K-P-LVISGEGHR-IPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~-~-l~~~~da~~-LPf~D~SFD~V~s~~~~l  179 (518)
                      ..++||+|||+|..+..+++.+-..|+++|+|+.              . . .+..++..+ ++...+.||+|+|+-=++
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI  190 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV  190 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCB
T ss_pred             ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccccc
Confidence            3589999999999887777666578999999841              0 1 123444433 233457999999984112


Q ss_pred             ecc--------CChH----------HHHHH-HHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCCCcc
Q 010086          180 EKA--------SKPL----------DFASE-IVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLP  240 (518)
Q Consensus       180 ~~~--------~dp~----------~~l~E-i~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~~p  240 (518)
                      ..-        -+|.          .++++ +.+.|+|||++++.++....   ..+.++|.+....  +...|      
T Consensus       191 ~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~---~~v~~l~~~~g~~--kDl~g------  259 (271)
T d1nv8a_         191 KSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQV---EELKKIVSDTVFL--KDSAG------  259 (271)
T ss_dssp             CGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCH---HHHTTTSTTCEEE--ECTTS------
T ss_pred             CcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHH---HHHHHHHHhCCEE--eccCC------
Confidence            110        0222          22322 56889999999998875433   4566777765442  33222      


Q ss_pred             ceeEEEEeec
Q 010086          241 YIREIVLKKE  250 (518)
Q Consensus       241 ~~~~vv~kK~  250 (518)
                      .-|.++++|+
T Consensus       260 ~~R~~~~~k~  269 (271)
T d1nv8a_         260 KYRFLLLNRR  269 (271)
T ss_dssp             SEEEEEEECC
T ss_pred             CcEEEEEEEc
Confidence            3467777775

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.75  E-value=2.1e-05  Score=71.62  Aligned_cols=110  Identities=15%  Similarity=0.133  Sum_probs=72.1

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCC-C---CCCCceeEEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRI-P---FDGNTFDFVFV  174 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~L-P---f~D~SFD~V~s  174 (518)
                      ..|.+|||+.||+|.+.......|...|+.||.++.                ...+.++|+.+. .   -....||+||.
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl  119 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  119 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence            468999999999999997666778789999998731                122456666432 1   24568999998


Q ss_pred             cCceeeccCChHHHHHHHH--hcccCCcEEEEEecCCCccCchhHhhhccCccEEEEec
Q 010086          175 GGARLEKASKPLDFASEIV--RTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRD  231 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~--RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~  231 (518)
                      .-= + +..+-...+..+.  ..|+|+|++++.......     +...+..+++++.+.
T Consensus       120 DPP-Y-~~~~~~~~l~~i~~~~~L~~~giIi~E~~~~~~-----~~~~~~~~~~~~~k~  171 (182)
T d2fhpa1         120 DPP-Y-AKQEIVSQLEKMLERQLLTNEAVIVCETDKTVK-----LPETIGTLKKTRETV  171 (182)
T ss_dssp             CCC-G-GGCCHHHHHHHHHHTTCEEEEEEEEEEEETTCC-----CCSEETTEEEEEEEE
T ss_pred             chh-h-hhhHHHHHHHHHHHCCCCCCCEEEEEEcCCCCC-----CccCCCceEEEEEEe
Confidence            531 1 1122345566664  479999999987654322     222345566666655

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.71  E-value=2.3e-05  Score=72.38  Aligned_cols=58  Identities=14%  Similarity=0.142  Sum_probs=45.4

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcC
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGG  176 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~  176 (518)
                      .|.+|||+|||+|..+..+...|...|+|+|+++.              ...+..+|+..+   ++.||+|++.-
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nP  117 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNP  117 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECC
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcC
Confidence            57899999999999987777788779999999841              122456777664   56799999975

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.66  E-value=0.00015  Score=65.97  Aligned_cols=98  Identities=21%  Similarity=0.193  Sum_probs=66.0

Q ss_pred             HHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cC-CCcEEEEecCCCCC------cEEeccCCCCCCCCCceeEEEEcCcee
Q 010086          108 LISEGYLSQSAKSLCVETQYGQDVFALKE-IG-VEDSIGIFKKSSKP------LVISGEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g-~~~v~gID~s~~~~------l~~~~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      +++....+++.+|||.|||+|.++..+.+ .+ ...++|+|+++...      ....++....+ ....||+|++.-- +
T Consensus        11 m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~ii~npP-~   88 (223)
T d2ih2a1          11 MVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWE-PGEAFDLILGNPP-Y   88 (223)
T ss_dssp             HHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCC-CSSCEEEEEECCC-C
T ss_pred             HHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccceeeeeehhccc-cccccceecccCc-c
Confidence            33444467789999999999998876654 22 35799999986422      23455554433 4578999998763 2


Q ss_pred             ecc---C-------------------------C-hHHHHHHHHhcccCCcEEEEEec
Q 010086          180 EKA---S-------------------------K-PLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       180 ~~~---~-------------------------d-p~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ...   .                         + -..++..+.+.|||||++++.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p  145 (223)
T d2ih2a1          89 GIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP  145 (223)
T ss_dssp             CCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence            110   0                         0 12456788899999999888764

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.61  E-value=6.7e-05  Score=71.27  Aligned_cols=86  Identities=10%  Similarity=0.028  Sum_probs=63.9

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCC--------CCCcEEeccCCCCCCCCCceeEEEEcCceeeccCChH
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKS--------SKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPL  186 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~--------~~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~  186 (518)
                      ...+|||||||+|..+..+.+. ...+++..|+.+        ....++.+|..+ |.+  .+|+++.... ||++++..
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~-~~p--~aD~~~l~~v-LHdw~d~~  155 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFT-SIP--NADAVLLKYI-LHNWTDKD  155 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTT-CCC--CCSEEEEESC-GGGSCHHH
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCccc-CCC--CCcEEEEEee-cccCChHH
Confidence            3468999999999999877764 346899999742        112245677654 444  4799999998 99998764


Q ss_pred             --HHHHHHHhcccCC---cEEEEE
Q 010086          187 --DFASEIVRTLKPE---GFAVVH  205 (518)
Q Consensus       187 --~~l~Ei~RVLKPG---G~lvi~  205 (518)
                        +.++.+++.|+||   |+++|.
T Consensus       156 ~~~iL~~~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         156 CLRILKKCKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             HHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             HHHHHHHHHHHcCcccCCcEEEEE
Confidence              6789999999999   555554

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.54  E-value=3.3e-05  Score=76.20  Aligned_cols=102  Identities=14%  Similarity=0.131  Sum_probs=66.7

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------------CCcEEeccCCCC----CCCCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------------KPLVISGEGHRI----PFDGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------------~~l~~~~da~~L----Pf~D~SFD~V~  173 (518)
                      .++.+|||+.||||.++.+++..| ++|++||.|+.                 ...++++|+...    ....+.||+|+
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~G-A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii  209 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAG-AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  209 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTT-CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCC-CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence            567899999999999998888777 58999999831                 123456665331    12357899999


Q ss_pred             EcCceee--------ccC-ChHHHHHHHHhcccCCcEEEEEecCCCccCchhH
Q 010086          174 VGGARLE--------KAS-KPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSF  217 (518)
Q Consensus       174 s~~~~l~--------~~~-dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~  217 (518)
                      +.-=.|-        .+. +....+..+.++|+|||.+++.+.+...+|...+
T Consensus       210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~  262 (309)
T d2igta1         210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSM  262 (309)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHH
T ss_pred             ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHH
Confidence            7320011        111 1234567788999999987776655444443334

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00011  Score=68.73  Aligned_cols=87  Identities=20%  Similarity=0.158  Sum_probs=63.0

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----------------CCcEEeccCCC-CC-----CCCCcee
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----------------KPLVISGEGHR-IP-----FDGNTFD  170 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----------------~~l~~~~da~~-LP-----f~D~SFD  170 (518)
                      ....+||+||||+|..+..+++. + -++++.+|.++.                ...+..|++.+ +|     ..+++||
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD  137 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  137 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence            35579999999999999888762 2 269999998752                11234566533 22     3478999


Q ss_pred             EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +||....   + .+-...+.++.+.|||||++++-
T Consensus       138 ~ifiD~d---k-~~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         138 VAVVDAD---K-ENCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             EEEECSC---S-TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEeCC---H-HHHHHHHHHHHHHhcCCcEEEEe
Confidence            9998652   2 23346788999999999999995

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00068  Score=62.79  Aligned_cols=87  Identities=14%  Similarity=0.002  Sum_probs=64.6

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086          116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGARL  179 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l  179 (518)
                      ++.+++|||+|.|.-..-++-. +-.+++.+|.+..               ...++.+.++++. .+.+||+|+|..  |
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA--~  141 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA--F  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC--S
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhh--h
Confidence            4579999999999877666543 3368999997621               1224567777764 467899999976  3


Q ss_pred             eccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086          180 EKASKPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                         ..+...+.-+.+.+||||.+++.-+.
T Consensus       142 ---~~~~~ll~~~~~~l~~~g~~~~~KG~  167 (207)
T d1jsxa_         142 ---ASLNDMVSWCHHLPGEQGRFYALKGQ  167 (207)
T ss_dssp             ---SSHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred             ---cCHHHHHHHHHHhcCCCcEEEEECCC
Confidence               34677888899999999999887653

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00026  Score=67.33  Aligned_cols=104  Identities=7%  Similarity=-0.065  Sum_probs=64.2

Q ss_pred             CCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC--------------C--CcEEeccCCCC------CCCCCceeEEE
Q 010086          117 SAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS--------------K--PLVISGEGHRI------PFDGNTFDFVF  173 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~--------------~--~l~~~~da~~L------Pf~D~SFD~V~  173 (518)
                      ..++||+|||+|.....|+.. .-.+++|+|+++.              .  ..++..+....      ...+++||+|+
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~iv  141 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM  141 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEE
Confidence            459999999999988776652 2369999999841              0  11222222111      23567899999


Q ss_pred             EcCceeeccC----------------------------------ChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhh
Q 010086          174 VGGARLEKAS----------------------------------KPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLD  219 (518)
Q Consensus       174 s~~~~l~~~~----------------------------------dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~  219 (518)
                      |+-=++..-.                                  .-.+.++|..+.++..|.+...+++.+.  ...+..
T Consensus       142 sNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~--l~~i~~  219 (250)
T d2h00a1         142 CNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCS--LAPLKE  219 (250)
T ss_dssp             ECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTS--HHHHHH
T ss_pred             ecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhh--HHHHHH
Confidence            9863132100                                  0123467888889999999888876543  234444


Q ss_pred             hcc
Q 010086          220 LFN  222 (518)
Q Consensus       220 lf~  222 (518)
                      +++
T Consensus       220 ~L~  222 (250)
T d2h00a1         220 ELR  222 (250)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.35  E-value=0.00035  Score=66.52  Aligned_cols=98  Identities=11%  Similarity=0.092  Sum_probs=66.4

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecC----CCCCcE-------E----eccCCCCCCCCCc
Q 010086          105 FQDLISEGYLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKK----SSKPLV-------I----SGEGHRIPFDGNT  168 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s----~~~~l~-------~----~~da~~LPf~D~S  168 (518)
                      +..+.+.++++++.+|+|+|||+|..++.+++.. ...+.|+++-    +.|...       +    ..+...  .+++.
T Consensus        55 l~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~--l~~~~  132 (257)
T d2p41a1          55 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFF--IPPER  132 (257)
T ss_dssp             HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTT--SCCCC
T ss_pred             HHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHh--cCCCc
Confidence            3445667889999999999999999998887653 3466666662    222221       1    122222  35788


Q ss_pred             eeEEEEcCceeeccCChH-------HHHHHHHhcccCCcEEEEEe
Q 010086          169 FDFVFVGGARLEKASKPL-------DFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp~-------~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .|.|+|-.+  .+..++.       +++.-+.+.|||||.+++=+
T Consensus       133 ~D~vlcDm~--ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKV  175 (257)
T d2p41a1         133 CDTLLCDIG--ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV  175 (257)
T ss_dssp             CSEEEECCC--CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCEEEeeCC--CCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEE
Confidence            999999764  4444442       45666778999999988865

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.30  E-value=0.00011  Score=70.01  Aligned_cols=70  Identities=14%  Similarity=0.087  Sum_probs=55.9

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------CC--cEEeccCCCCCCCCCceeEE
Q 010086          106 QDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------KP--LVISGEGHRIPFDGNTFDFV  172 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------~~--l~~~~da~~LPf~D~SFD~V  172 (518)
                      +.+++..-+.++++||+||||+|.++..|.+.+ .++++||+++.           .+  .++.+|+.++++++..++.|
T Consensus        19 ~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~v   97 (245)
T d1yuba_          19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKI   97 (245)
T ss_dssp             HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEEE
T ss_pred             HHHHHhcCCCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceeeeE
Confidence            344555557889999999999999999998876 79999999752           11  14578999999999888888


Q ss_pred             EEcC
Q 010086          173 FVGG  176 (518)
Q Consensus       173 ~s~~  176 (518)
                      +++.
T Consensus        98 v~NL  101 (245)
T d1yuba_          98 VGNI  101 (245)
T ss_dssp             EEEC
T ss_pred             eeee
Confidence            8876

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.25  E-value=0.0021  Score=62.40  Aligned_cols=136  Identities=13%  Similarity=0.056  Sum_probs=79.5

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHh----cC--CCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKE----IG--VEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVF  173 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~----~g--~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~  173 (518)
                      .+++.+|||.+||+|.++..+.+    .+  ...++|+|+++.              ......++... ..+...||+|+
T Consensus       115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~vi  193 (328)
T d2f8la1         115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVI  193 (328)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEE
T ss_pred             CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccc-ccccccccccc
Confidence            35677999999999998865532    22  136899998741              11223444432 34567899999


Q ss_pred             EcCceeeccCCh------------------HHHHHHHHhcccCCcEEEEEecCCCcc--CchhHhh-hccCccEEEEecc
Q 010086          174 VGGARLEKASKP------------------LDFASEIVRTLKPEGFAVVHVRAKDEY--SFNSFLD-LFNSCKLVKSRDI  232 (518)
Q Consensus       174 s~~~~l~~~~dp------------------~~~l~Ei~RVLKPGG~lvi~~~~~~~~--s~~~~~~-lf~~~~~v~~~~v  232 (518)
                      ++-= +......                  ..++..+.+.|||||++++.+...-..  +...+++ |..++.+..+-..
T Consensus       194 ~NPP-y~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~l  272 (328)
T d2f8la1         194 SDLP-VGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKL  272 (328)
T ss_dssp             EECC-CSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEEC
T ss_pred             cCCC-CCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEEEC
Confidence            9853 2111111                  136888999999999988876533211  1123333 3566666655443


Q ss_pred             C--CCCC-CccceeEEEEeeccc
Q 010086          233 D--GIDS-SLPYIREIVLKKESD  252 (518)
Q Consensus       233 ~--~~~~-~~p~~~~vv~kK~~~  252 (518)
                      .  .|.. .++ -..++++|...
T Consensus       273 p~~~F~~~~~~-t~ilvl~K~~~  294 (328)
T d2f8la1         273 PETLFKSEQAR-KSILILEKADV  294 (328)
T ss_dssp             CGGGSCC-CCC-EEEEEEEECCT
T ss_pred             CccccCCCCCC-eEEEEEECCCC
Confidence            2  2332 222 23577887643

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.18  E-value=0.00016  Score=69.92  Aligned_cols=91  Identities=14%  Similarity=0.226  Sum_probs=63.4

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------------------CC--cEEeccCCCCCCCCCce
Q 010086          115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------------------KP--LVISGEGHRIPFDGNTF  169 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------------------~~--l~~~~da~~LPf~D~SF  169 (518)
                      +...+||.||+|.|..+..+.+.+..+++.+|+++.                       .+  .++.+|+...--.++.|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y  150 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  150 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence            456799999999999887766666678999998631                       01  23455553221136789


Q ss_pred             eEEEEcCceeeccCCh-----HHHHHHHHhcccCCcEEEEEec
Q 010086          170 DFVFVGGARLEKASKP-----LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       170 D~V~s~~~~l~~~~dp-----~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      |+|+.-.  ++....+     ..+++.+.|.|+|||++++..+
T Consensus       151 DvIi~D~--~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~  191 (276)
T d1mjfa_         151 DVIIADS--TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  191 (276)
T ss_dssp             EEEEEEC--CCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CEEEEeC--CCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence            9999854  3332222     4689999999999999999764

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.08  E-value=0.00056  Score=64.46  Aligned_cols=73  Identities=11%  Similarity=0.034  Sum_probs=54.2

Q ss_pred             HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------C-CcEEeccCCCCCCCCCce
Q 010086          103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------K-PLVISGEGHRIPFDGNTF  169 (518)
Q Consensus       103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~-~l~~~~da~~LPf~D~SF  169 (518)
                      .+.+.+++..-++++++||+||||+|.++..|.+.+ .++++||+++.            + ..++.+|+.+++++....
T Consensus         8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~   86 (235)
T d1qama_           8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS   86 (235)
T ss_dssp             HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcccccccc
Confidence            344555665567899999999999999999998876 79999998631            1 135688998888876555


Q ss_pred             eEEEEcC
Q 010086          170 DFVFVGG  176 (518)
Q Consensus       170 D~V~s~~  176 (518)
                      ..|+++.
T Consensus        87 ~~vv~NL   93 (235)
T d1qama_          87 YKIFGNI   93 (235)
T ss_dssp             CEEEEEC
T ss_pred             ceeeeee
Confidence            5555543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=96.92  E-value=0.0021  Score=57.74  Aligned_cols=108  Identities=16%  Similarity=0.123  Sum_probs=68.1

Q ss_pred             CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CC--cEEeccC---CCCCCCCCceeEEEEc
Q 010086          116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KP--LVISGEG---HRIPFDGNTFDFVFVG  175 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~--l~~~~da---~~LPf~D~SFD~V~s~  175 (518)
                      .+.++||+-||||.+.......|...|+.||.+..               ..  .+...|+   ...+.....||+||.-
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD  122 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  122 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence            56799999999999986666678889999998731               11  1222332   2234456679999985


Q ss_pred             CceeeccCChHHHHHHHH--hcccCCcEEEEEecCCCccCchhHhhhccCccEEEEec
Q 010086          176 GARLEKASKPLDFASEIV--RTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRD  231 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~--RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~  231 (518)
                      -= +.. ..-...+.-+.  ..|+|+|++++.........      +..++++++.++
T Consensus       123 PP-Y~~-~~~~~~l~~l~~~~~L~~~~liiiE~~~~~~~~------~~~~~~~~k~kk  172 (183)
T d2ifta1         123 PP-FHF-NLAEQAISLLCENNWLKPNALIYVETEKDKPLI------TPENWTLLKEKT  172 (183)
T ss_dssp             CC-SSS-CHHHHHHHHHHHTTCEEEEEEEEEEEESSSCCC------CCTTEEEEEEEE
T ss_pred             hh-Hhh-hhHHHHHHHHHHhCCcCCCcEEEEEecCCCCCC------CCCCcEEEEEEe
Confidence            41 111 11234444443  57999999999876543211      124567777666

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=96.80  E-value=0.00079  Score=66.05  Aligned_cols=91  Identities=13%  Similarity=0.229  Sum_probs=63.2

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-------------------C-CcEEeccCCCC-CCCCCceeEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-------------------K-PLVISGEGHRI-PFDGNTFDFV  172 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-------------------~-~l~~~~da~~L-Pf~D~SFD~V  172 (518)
                      +...+||.||.|.|..+..+.+. +..+++.+|+++.                   + ..++.+|+.+. .-.++.||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            44579999999999988777554 4578999998731                   1 12345665442 2246789999


Q ss_pred             EEcCceeecc--CCh------HHHHHHHHhcccCCcEEEEEec
Q 010086          173 FVGGARLEKA--SKP------LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       173 ~s~~~~l~~~--~dp------~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      ++-.  .+..  ..|      ..+++.+.|.|||||++++..+
T Consensus       156 i~D~--~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~  196 (312)
T d1uira_         156 IIDL--TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (312)
T ss_dssp             EEEC--CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEeC--CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence            9754  2211  112      3688999999999999998764

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=96.71  E-value=0.0037  Score=58.93  Aligned_cols=89  Identities=11%  Similarity=0.031  Sum_probs=63.1

Q ss_pred             CCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC---------------CCcEEeccCCCCCCC---CCceeEEEEcC
Q 010086          116 QSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS---------------KPLVISGEGHRIPFD---GNTFDFVFVGG  176 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~---D~SFD~V~s~~  176 (518)
                      .+.+++|||+|.|.-...|+- .+..+++-+|.+..               ...++.+.++++.-.   .++||+|+|..
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA  149 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence            567999999999987655553 33468999996521               112345556655332   46899999986


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      +     ..+...+.-+...+||||.+++.=+..
T Consensus       150 v-----a~l~~ll~~~~~~l~~~g~~i~~KG~~  177 (239)
T d1xdza_         150 V-----ARLSVLSELCLPLVKKNGLFVALKAAS  177 (239)
T ss_dssp             C-----SCHHHHHHHHGGGEEEEEEEEEEECC-
T ss_pred             h-----hCHHHHHHHHhhhcccCCEEEEECCCC
Confidence            3     346788899999999999998876543

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.68  E-value=0.0015  Score=63.30  Aligned_cols=92  Identities=16%  Similarity=0.246  Sum_probs=65.2

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-----------------CC--cEEeccCCC-C-CCCCCceeEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-----------------KP--LVISGEGHR-I-PFDGNTFDFV  172 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-----------------~~--l~~~~da~~-L-Pf~D~SFD~V  172 (518)
                      +...+||-||.|.|..+..+.+. +..+++.+|+++.                 .+  .++.+|+.+ + -.++++||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            44579999999999999877664 5568999998731                 11  234555432 2 2456799999


Q ss_pred             EEcCceeeccCCh-----HHHHHHHHhcccCCcEEEEEecC
Q 010086          173 FVGGARLEKASKP-----LDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       173 ~s~~~~l~~~~dp-----~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +.-.  ++-...+     ..+++.+.|.|+|||++++..+.
T Consensus       159 i~D~--~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         159 IVDS--SDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             EECC--CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEcC--CCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            9854  3322212     36899999999999999998754

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.65  E-value=0.0011  Score=62.14  Aligned_cols=86  Identities=15%  Similarity=0.241  Sum_probs=61.3

Q ss_pred             CCCeEEEEcCCCCHhHHHHHh-cC-CCcEEEEecCCC----------------CCcEEeccCCCC-C------CCCCcee
Q 010086          116 QSAKSLCVETQYGQDVFALKE-IG-VEDSIGIFKKSS----------------KPLVISGEGHRI-P------FDGNTFD  170 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~L~~-~g-~~~v~gID~s~~----------------~~l~~~~da~~L-P------f~D~SFD  170 (518)
                      ...+||+||+++|..+..+++ .+ -++++.+|.++.                ...++.+++.+. |      ..+++||
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD  138 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD  138 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence            457999999999999888875 22 369999998752                012345555321 2      1367899


Q ss_pred             EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +||.-.   ++ .+-...+..+.+.|+|||++++-
T Consensus       139 ~iFiDa---~k-~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         139 FIFVDA---DK-DNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             EEEECS---CS-TTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             EEEecc---ch-hhhHHHHHHHHhhcCCCcEEEEc
Confidence            999864   23 23446788899999999999995

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.54  E-value=0.0094  Score=55.72  Aligned_cols=87  Identities=11%  Similarity=0.170  Sum_probs=56.3

Q ss_pred             CCeEEEEcCCCCHhHHHHHh----cC-CCcEEEEecCCCC----------CcEEeccCCCCC----CCCCceeEEEEcCc
Q 010086          117 SAKSLCVETQYGQDVFALKE----IG-VEDSIGIFKKSSK----------PLVISGEGHRIP----FDGNTFDFVFVGGA  177 (518)
Q Consensus       117 ~~rvLDVGcGtG~~~~~L~~----~g-~~~v~gID~s~~~----------~l~~~~da~~LP----f~D~SFD~V~s~~~  177 (518)
                      ..+||+||++.|..+..+++    .+ -++++|+|+.+..          ..+.++|..+..    +.+..+|+|+.-+.
T Consensus        81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~  160 (232)
T d2bm8a1          81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA  160 (232)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred             CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcCC
Confidence            46899999999986654442    23 3689999986421          124567655432    35667899887553


Q ss_pred             eeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          178 RLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                        |+ .+....--+....|||||++++.-
T Consensus       161 --H~-~~~v~~~~~~~~lLk~GG~iIveD  186 (232)
T d2bm8a1         161 --HA-NTFNIMKWAVDHLLEEGDYFIIED  186 (232)
T ss_dssp             --CS-SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             --cc-hHHHHHHHHHhcccCcCCEEEEEc
Confidence              33 222222125668999999999963

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0022  Score=62.02  Aligned_cols=93  Identities=13%  Similarity=0.182  Sum_probs=63.6

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC------------------C-CcEEeccCCCC-CCCCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS------------------K-PLVISGEGHRI-PFDGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~------------------~-~l~~~~da~~L-Pf~D~SFD~V~  173 (518)
                      +...+||-||.|.|..+..+.+. +..+++.+|+.+.                  + ..++.+|+.+. --.+++||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            45579999999999999877764 4679999998731                  1 12345564432 12457899999


Q ss_pred             EcCceeeccCCh-----HHHHHHHHhcccCCcEEEEEecCC
Q 010086          174 VGGARLEKASKP-----LDFASEIVRTLKPEGFAVVHVRAK  209 (518)
Q Consensus       174 s~~~~l~~~~dp-----~~~l~Ei~RVLKPGG~lvi~~~~~  209 (518)
                      +-.  ++-...+     ..+++.+.|.|+|||++++..+..
T Consensus       157 ~D~--~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  195 (285)
T d2o07a1         157 TDS--SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ  195 (285)
T ss_dssp             EEC--C-----------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             EcC--CCCCCcccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence            864  3322112     257999999999999999987543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.34  E-value=0.0024  Score=62.03  Aligned_cols=92  Identities=15%  Similarity=0.177  Sum_probs=62.7

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC------------------C-CcEEeccCCC-CCCCCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS------------------K-PLVISGEGHR-IPFDGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~------------------~-~l~~~~da~~-LPf~D~SFD~V~  173 (518)
                      +...+||-||.|.|..+..+.+. +..+++.+|+++.                  + ..++.+|+.+ +.=.++.||+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            34579999999999988777664 4578999998731                  1 1233455433 122457899999


Q ss_pred             EcCceeeccC------ChHHHHHHHHhcccCCcEEEEEecC
Q 010086          174 VGGARLEKAS------KPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       174 s~~~~l~~~~------dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      +-.  ++...      .-..+++.+.|.|+|||++++....
T Consensus       168 ~D~--~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         168 IDS--TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             EEC------------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcC--CCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence            854  33211      1247899999999999999998754

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.34  E-value=0.0029  Score=60.78  Aligned_cols=92  Identities=20%  Similarity=0.247  Sum_probs=65.3

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-----------------CC--cEEeccCCC-CCCCCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-----------------KP--LVISGEGHR-IPFDGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-----------------~~--l~~~~da~~-LPf~D~SFD~V~  173 (518)
                      +...+||-||.|.|..+..+.+. +..+++.+|+.+.                 .+  .++.+|+.+ +--.++.||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            45579999999999999777664 5679999998731                 11  234566543 223467899999


Q ss_pred             EcCceeeccC-----ChHHHHHHHHhcccCCcEEEEEecC
Q 010086          174 VGGARLEKAS-----KPLDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       174 s~~~~l~~~~-----dp~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      .-.  .+...     .-..+++.+.|.|+|||+++...+.
T Consensus       154 ~D~--~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s  191 (274)
T d1iy9a_         154 VDS--TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (274)
T ss_dssp             ESC--SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcC--CCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence            864  22221     1247899999999999999998643

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.017  Score=56.34  Aligned_cols=117  Identities=14%  Similarity=0.168  Sum_probs=75.8

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCC----CCCCCCceeEEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHR----IPFDGNTFDFVFV  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~----LPf~D~SFD~V~s  174 (518)
                      ..++.+|||+-||+|.++..|++.+ .+|+|||.++.               ...++.++.++    ++.....||+|+.
T Consensus       210 ~~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vil  288 (358)
T d1uwva2         210 VQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL  288 (358)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred             cCCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEe
Confidence            5678899999999999999998764 79999998741               12245565543    2344678999886


Q ss_pred             cCceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhc-cCccEEEEeccCCCCCC
Q 010086          175 GGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLF-NSCKLVKSRDIDGIDSS  238 (518)
Q Consensus       175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf-~~~~~v~~~~v~~~~~~  238 (518)
                      .--  ..=  ..++++++.+ ++|.=+++|.....  .-...+..|. ..|++..+.-+|.|=.+
T Consensus       289 DPP--R~G--~~~~~~~l~~-~~~~~ivYVSCnp~--TlaRDl~~l~~~gy~l~~i~~~D~FP~T  346 (358)
T d1uwva2         289 DPA--RAG--AAGVMQQIIK-LEPIRIVYVSCNPA--TLARDSEALLKAGYTIARLAMLDMFPHT  346 (358)
T ss_dssp             CCC--TTC--CHHHHHHHHH-HCCSEEEEEESCHH--HHHHHHHHHHHTTCEEEEEEEECCSTTS
T ss_pred             CCC--Ccc--HHHHHHHHHH-cCCCEEEEEeCCHH--HHHHHHHHHHHCCCeEeEEEEEecCCCC
Confidence            431  000  0245666666 47777777765321  1112333332 46999999999986554

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.09  E-value=0.005  Score=55.53  Aligned_cols=94  Identities=16%  Similarity=0.165  Sum_probs=63.3

Q ss_pred             CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------CC--cEEeccCCCC-----CCCCCceeEEEEcC
Q 010086          113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------KP--LVISGEGHRI-----PFDGNTFDFVFVGG  176 (518)
Q Consensus       113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------~~--l~~~~da~~L-----Pf~D~SFD~V~s~~  176 (518)
                      .+++|+.++|..+|.|..+..+.+.+ .+|+|+|..+.         ..  .+++++..++     .+..+.+|.|+.-.
T Consensus        15 ~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DL   93 (182)
T d1wg8a2          15 AVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADL   93 (182)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEEC
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEEc
Confidence            36889999999999998887776654 69999998641         11  1233332222     24467899999755


Q ss_pred             c-eeeccCCh-------HHHHHHHHhcccCCcEEEEEec
Q 010086          177 A-RLEKASKP-------LDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       177 ~-~l~~~~dp-------~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      + .-.++.+|       ...+.....+|+|||.+++...
T Consensus        94 GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f  132 (182)
T d1wg8a2          94 GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF  132 (182)
T ss_dssp             SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence            3 12233333       2457778899999999888764

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.98  E-value=0.0033  Score=61.53  Aligned_cols=92  Identities=14%  Similarity=0.183  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------C--------C--cEEeccCCCC-CCCCCceeEEE
Q 010086          115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------K--------P--LVISGEGHRI-PFDGNTFDFVF  173 (518)
Q Consensus       115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------~--------~--l~~~~da~~L-Pf~D~SFD~V~  173 (518)
                      +...+||.||.|.|..+..+.+. +..+++.+|+.+.         +        +  .++.+|+.+. --.++.||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            34579999999999999777664 4578999998631         1        1  1234444321 12467899999


Q ss_pred             EcCceeeccCCh-----HHHHHHHHhcccCCcEEEEEecC
Q 010086          174 VGGARLEKASKP-----LDFASEIVRTLKPEGFAVVHVRA  208 (518)
Q Consensus       174 s~~~~l~~~~dp-----~~~l~Ei~RVLKPGG~lvi~~~~  208 (518)
                      .-.  .+-...+     ..+++.+.|.|+|||+++.+.+.
T Consensus       185 ~D~--~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s  222 (312)
T d2b2ca1         185 TDS--SDPVGPAESLFGQSYYELLRDALKEDGILSSQGES  222 (312)
T ss_dssp             ECC--C-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             EcC--CCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence            864  2322112     36789999999999999998643

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.57  E-value=0.027  Score=49.33  Aligned_cols=92  Identities=13%  Similarity=0.062  Sum_probs=59.1

Q ss_pred             HHHHcCCCCCCCeEEEEcCCC-CHhHHHHH-hcCCCcEEEEecCCC---------CCcEEeccCCCC-----CCCCCcee
Q 010086          107 DLISEGYLSQSAKSLCVETQY-GQDVFALK-EIGVEDSIGIFKKSS---------KPLVISGEGHRI-----PFDGNTFD  170 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGcGt-G~~~~~L~-~~g~~~v~gID~s~~---------~~l~~~~da~~L-----Pf~D~SFD  170 (518)
                      .+...+-+++|++||-+|||. |..+..+. ..|...++.+|.++.         ...++..+.++.     -+.++.||
T Consensus        19 a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          19 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEE
T ss_pred             HHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCc
Confidence            344555689999999999987 44454444 467677888887642         111221111110     12346799


Q ss_pred             EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +|+-.-.       -...++++.+.+||+|.+++.
T Consensus        99 ~vid~~G-------~~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          99 FALESTG-------SPEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             EEEECSC-------CHHHHHHHHHTEEEEEEEEEC
T ss_pred             EEEEcCC-------cHHHHHHHHhcccCceEEEEE
Confidence            9996543       235678999999999998875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.51  E-value=0.013  Score=51.59  Aligned_cols=94  Identities=16%  Similarity=0.124  Sum_probs=59.2

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCC-------C-C-C
Q 010086          105 FQDLISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHR-------I-P-F  164 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~-------L-P-f  164 (518)
                      .+.+.+.+-+++|++||-+|+|+ |..+..+++ .|..+|+++|.++..         ..++....++       + . .
T Consensus        17 ~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~   96 (182)
T d1vj0a2          17 YHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDIT   96 (182)
T ss_dssp             HHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhh
Confidence            34445556688999999999986 666655544 675689999986421         1111111010       0 0 1


Q ss_pred             CCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          165 DGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       165 ~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ....||+|+.... -      ...++...+.|+|||++++.
T Consensus        97 ~~~g~Dvvid~vG-~------~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2          97 HGRGADFILEATG-D------SRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             TTSCEEEEEECSS-C------TTHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCceEEeecCC-c------hhHHHHHHHHhcCCCEEEEE
Confidence            2335999997643 1      24578889999999998764

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.23  E-value=0.01  Score=57.77  Aligned_cols=93  Identities=13%  Similarity=0.123  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEE--
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFV--  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s--  174 (518)
                      .++|.+|||++||+|.=+..+++.  +-+.+++.|+++.               .......|+..++..++.||.|+.  
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa  193 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA  193 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence            578999999999999977666653  2357999998741               111235677777777899999995  


Q ss_pred             --cC-ceeeccC------Ch----------HHHHHHHHhcccCCcEEEEEe
Q 010086          175 --GG-ARLEKAS------KP----------LDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       175 --~~-~~l~~~~------dp----------~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                        ++ +.+..-+      .+          .+.+..+.+.|||||+++-.+
T Consensus       194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT  244 (313)
T d1ixka_         194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  244 (313)
T ss_dssp             CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee
Confidence              22 1132211      11          135688889999999877764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.20  E-value=0.041  Score=47.53  Aligned_cols=86  Identities=6%  Similarity=-0.007  Sum_probs=54.8

Q ss_pred             CCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCCC----------CCCCcee
Q 010086          112 GYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRIP----------FDGNTFD  170 (518)
Q Consensus       112 gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~LP----------f~D~SFD  170 (518)
                      .-++++++||-+|||+ |..+..+++ .| .+|+++|.++..         ......+...-.          ...+-+|
T Consensus        22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D  100 (170)
T d1e3ja2          22 AGVQLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN  100 (170)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred             hCCCCCCEEEEEcccccchhhHhhHhhhc-ccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCc
Confidence            3478999999999996 666655544 57 589999986421         111111110000          0124589


Q ss_pred             EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +|+-...       -...+..+.+.|||||++++.
T Consensus       101 ~vid~~g-------~~~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2         101 VTIDCSG-------NEKCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             EEEECSC-------CHHHHHHHHHHSCTTCEEEEC
T ss_pred             eeeecCC-------ChHHHHHHHHHHhcCCceEEE
Confidence            8886543       235688899999999998875

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.013  Score=51.08  Aligned_cols=88  Identities=11%  Similarity=0.049  Sum_probs=56.0

Q ss_pred             cCCCCCCCeEEEEcCCC-CHhHHHHH-hcCCCcEEEEecCCCC---------CcEEeccCCCCC--------CCCCceeE
Q 010086          111 EGYLSQSAKSLCVETQY-GQDVFALK-EIGVEDSIGIFKKSSK---------PLVISGEGHRIP--------FDGNTFDF  171 (518)
Q Consensus       111 ~gll~~~~rvLDVGcGt-G~~~~~L~-~~g~~~v~gID~s~~~---------~l~~~~da~~LP--------f~D~SFD~  171 (518)
                      ..-++++++||-+|+|+ |..+..+. ..|..+|+++|.++..         ..+...+.+...        -....+|+
T Consensus        21 ~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dv  100 (171)
T d1pl8a2          21 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEV  100 (171)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred             HhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceE
Confidence            34578999999999998 55554444 4676689999986421         111111111000        01235899


Q ss_pred             EEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |+....       -...++.....+||||++++.
T Consensus       101 vid~~G-------~~~~~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2         101 TIECTG-------AEASIQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             EEECSC-------CHHHHHHHHHHSCTTCEEEEC
T ss_pred             EEeccC-------CchhHHHHHHHhcCCCEEEEE
Confidence            887653       135688899999999998886

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.88  E-value=0.053  Score=47.72  Aligned_cols=95  Identities=12%  Similarity=0.075  Sum_probs=62.3

Q ss_pred             HHHHHHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCCC-------CC
Q 010086          104 VFQDLISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRIP-------FD  165 (518)
Q Consensus       104 l~~~L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~LP-------f~  165 (518)
                      -++.+...+.+++|++||-+|||. |..+..+.+ .|...|+.+|.++..         ..++.....+-.       ..
T Consensus        16 ~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~   95 (174)
T d1e3ia2          16 GYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELT   95 (174)
T ss_dssp             HHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHH
T ss_pred             HHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhh
Confidence            334445566789999999999998 777655554 676789999987531         111111111100       12


Q ss_pred             CCceeEEEEcCceeeccCChHHHHHHHHhcccCC-cEEEEE
Q 010086          166 GNTFDFVFVGGARLEKASKPLDFASEIVRTLKPE-GFAVVH  205 (518)
Q Consensus       166 D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPG-G~lvi~  205 (518)
                      .+-+|+|+-...       -...+.+..+.|+|| |.+++.
T Consensus        96 ~~G~d~vie~~G-------~~~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2          96 AGGVDYSLDCAG-------TAQTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             TSCBSEEEESSC-------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             cCCCcEEEEecc-------cchHHHHHHHHhhcCCeEEEec
Confidence            345899987653       235789999999997 998775

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.046  Score=52.08  Aligned_cols=93  Identities=13%  Similarity=0.140  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCCC--------------CcEEecc-CCCC-CCCCCceeEEEE--
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSSK--------------PLVISGE-GHRI-PFDGNTFDFVFV--  174 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~~--------------~l~~~~d-a~~L-Pf~D~SFD~V~s--  174 (518)
                      .+++.+|||+++|.|.=+..+++.+ .+.++++|+++..              ...+..+ .... +...+.||.|+.  
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da  179 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA  179 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence            5789999999999999887777654 3579999998642              1122222 2211 234678999994  


Q ss_pred             --cC-ceeeccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 010086          175 --GG-ARLEKASK----------------PLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       175 --~~-~~l~~~~d----------------p~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                        ++ +++..-++                ..+.+..+.+.|||||+++-.+
T Consensus       180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsT  230 (284)
T d1sqga2         180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  230 (284)
T ss_dssp             CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence              32 12322111                1235678888999999987764

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.015  Score=54.87  Aligned_cols=44  Identities=7%  Similarity=-0.083  Sum_probs=35.8

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC
Q 010086          105 FQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS  149 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~  149 (518)
                      .+.+++..-+.+++.||+||||+|.++..|.+.+ .++++||+++
T Consensus        10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~   53 (252)
T d1qyra_          10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDR   53 (252)
T ss_dssp             HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCH
T ss_pred             HHHHHHhcCCCCCCEEEEECCCchHHHHHHHccC-CceEEEEecc
Confidence            3444444456789999999999999999999876 7999999864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.61  E-value=0.011  Score=51.60  Aligned_cols=88  Identities=20%  Similarity=0.101  Sum_probs=55.0

Q ss_pred             CCCCCCCeEEEEcCCC-CHhHHHHH-hcCCCcEEEEecCCCC---------CcEEec--cCCCCCCCCCceeEEEEcCce
Q 010086          112 GYLSQSAKSLCVETQY-GQDVFALK-EIGVEDSIGIFKKSSK---------PLVISG--EGHRIPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       112 gll~~~~rvLDVGcGt-G~~~~~L~-~~g~~~v~gID~s~~~---------~l~~~~--da~~LPf~D~SFD~V~s~~~~  178 (518)
                      ..+++|++||.+|+|+ |..+..++ ..| .+|+++|.++..         ..++..  +.+...-..+.||+|+.....
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~  101 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAMG-AETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS  101 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHT-CEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhcc-ccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecC
Confidence            3478999999999996 66665554 467 589999987642         112211  111111124579999875431


Q ss_pred             eeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          179 LEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      -..     ..+....+.|||||++++.
T Consensus       102 ~~~-----~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2         102 LTD-----IDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             STT-----CCTTTGGGGEEEEEEEEEC
T ss_pred             Ccc-----chHHHHHHHhhccceEEEe
Confidence            111     1245678999999998775

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.40  E-value=0.0053  Score=54.48  Aligned_cols=89  Identities=17%  Similarity=0.168  Sum_probs=58.1

Q ss_pred             HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCC-----C-CCCCceeEE
Q 010086          110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRI-----P-FDGNTFDFV  172 (518)
Q Consensus       110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~L-----P-f~D~SFD~V  172 (518)
                      +..-+++|++||-+|||. |..+..+++ .|..+|+++|.++..         ..++....++.     . ....-||+|
T Consensus        21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~v  100 (174)
T d1jqba2          21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRV  100 (174)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEE
T ss_pred             HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceE
Confidence            445689999999999997 776655555 576689999987421         11121111110     0 122449999


Q ss_pred             EEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          173 FVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       173 ~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +..-. -      ...+++..+.|||||.+++.
T Consensus       101 id~~g-~------~~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2         101 IMAGG-G------SETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             EECSS-C------TTHHHHHHHHEEEEEEEEEC
T ss_pred             EEccC-C------HHHHHHHHHHHhcCCEEEEE
Confidence            97653 1      24578889999999998885

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.38  E-value=0.067  Score=47.93  Aligned_cols=94  Identities=10%  Similarity=0.049  Sum_probs=59.8

Q ss_pred             HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC--------CcEEeccCCCCCC--------CCCceeE
Q 010086          110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK--------PLVISGEGHRIPF--------DGNTFDF  171 (518)
Q Consensus       110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~--------~l~~~~da~~LPf--------~D~SFD~  171 (518)
                      +..-+++|++||.+|||. |..+..+++ .|...|+.+|.++..        ...+ -+..+-++        ...-+|.
T Consensus        19 ~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~-~~~~~~~~~~~i~~~t~g~g~D~   97 (195)
T d1kola2          19 VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIA-DLSLDTPLHEQIAALLGEPEVDC   97 (195)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE-ETTSSSCHHHHHHHHHSSSCEEE
T ss_pred             HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEE-EeCCCcCHHHHHHHHhCCCCcEE
Confidence            345689999999999998 655555544 676799999987421        0011 11111111        2346899


Q ss_pred             EEEcCceee------c---cCChHHHHHHHHhcccCCcEEEEE
Q 010086          172 VFVGGARLE------K---ASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       172 V~s~~~~l~------~---~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ++-... .+      +   .......++++.+++||||.+++.
T Consensus        98 vid~vG-~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          98 AVDAVG-FEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             EEECCC-TTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             EEECcc-ccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence            986532 11      1   112346899999999999998876

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.039  Score=52.70  Aligned_cols=46  Identities=15%  Similarity=0.139  Sum_probs=37.4

Q ss_pred             HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC
Q 010086          103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS  149 (518)
Q Consensus       103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~  149 (518)
                      .+.+.+++..-+.+++.||+||+|+|.++..|.+.+ .++++|++++
T Consensus         8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~   53 (278)
T d1zq9a1           8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDP   53 (278)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCH
T ss_pred             HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEcc
Confidence            344455555567789999999999999999998887 7999999863

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.72  E-value=0.062  Score=45.96  Aligned_cols=84  Identities=8%  Similarity=0.003  Sum_probs=51.2

Q ss_pred             CCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC--------CcEEeccCCC-----C-CCCCCceeEEEEcC
Q 010086          113 YLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK--------PLVISGEGHR-----I-PFDGNTFDFVFVGG  176 (518)
Q Consensus       113 ll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~--------~l~~~~da~~-----L-Pf~D~SFD~V~s~~  176 (518)
                      -++++++||-.|+|+ |..+..+.+ .| .+|+++|.++..        ...+.....+     + ...++-+|.|++..
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g-~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  102 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV  102 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCC-CeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC
Confidence            378999999999998 555544444 55 589999976421        1111111000     1 01234455555433


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .        ...+....+.|||||.+++.
T Consensus       103 ~--------~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2         103 S--------KPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             C--------HHHHHHHHHHEEEEEEEEEC
T ss_pred             C--------HHHHHHHHHHhccCCceEec
Confidence            2        35688999999999998886

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=93.53  E-value=0.11  Score=52.02  Aligned_cols=134  Identities=10%  Similarity=0.098  Sum_probs=76.1

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHh----cC----------CCcEEEEecCCC-----------------CCcEEeccCCCC
Q 010086          114 LSQSAKSLCVETQYGQDVFALKE----IG----------VEDSIGIFKKSS-----------------KPLVISGEGHRI  162 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~----~g----------~~~v~gID~s~~-----------------~~l~~~~da~~L  162 (518)
                      ..++.+|||-+||+|.+.....+    .+          ...+.|+|+++.                 ......+|... 
T Consensus       160 ~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~-  238 (425)
T d2okca1         160 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE-  238 (425)
T ss_dssp             CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTT-
T ss_pred             CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhh-
Confidence            35678999999999998754432    11          025899998631                 11233444332 


Q ss_pred             CCCCCceeEEEEcCcee--ecc--------------CCh-HHHHHHHHhcccCCcEEEEEecCCCccC---chhHhh-hc
Q 010086          163 PFDGNTFDFVFVGGARL--EKA--------------SKP-LDFASEIVRTLKPEGFAVVHVRAKDEYS---FNSFLD-LF  221 (518)
Q Consensus       163 Pf~D~SFD~V~s~~~~l--~~~--------------~dp-~~~l~Ei~RVLKPGG~lvi~~~~~~~~s---~~~~~~-lf  221 (518)
                      ..+...||+|+++-= +  ...              .+. ..++..+...|||||.+++.+...-.++   ...+++ |.
T Consensus       239 ~~~~~~fD~Ii~NPP-fg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll  317 (425)
T d2okca1         239 KEPSTLVDVILANPP-FGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLL  317 (425)
T ss_dssp             SCCSSCEEEEEECCC-SSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHH
T ss_pred             hhcccccceEEecCC-CCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHHH
Confidence            345778999999752 2  111              011 2488999999999999888764322211   122333 34


Q ss_pred             cCccEEEEecc--CCC-CCCccceeEEEEeec
Q 010086          222 NSCKLVKSRDI--DGI-DSSLPYIREIVLKKE  250 (518)
Q Consensus       222 ~~~~~v~~~~v--~~~-~~~~p~~~~vv~kK~  250 (518)
                      .++.+..+-..  +.| +-.+|+ ..++++|+
T Consensus       318 ~~~~i~aIi~LP~~~F~~t~v~t-~Ilil~K~  348 (425)
T d2okca1         318 QDFNLHTILRLPTGIFYAQGVKA-NVLFFSKG  348 (425)
T ss_dssp             HHEEEEEEEECCSSSSSSTTCCE-EEEEEEES
T ss_pred             HhcchhHhhcCCcccccCCCCCe-EEEEEECC
Confidence            55555544432  223 223433 35666664

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.08  E-value=0.16  Score=43.88  Aligned_cols=86  Identities=14%  Similarity=0.023  Sum_probs=55.4

Q ss_pred             CCCCCCeEEEEcCCC-CHhHHHH-HhcCCCcEEEEecCCC---------CCcEEeccCCCC----C-CCCCceeEEEEcC
Q 010086          113 YLSQSAKSLCVETQY-GQDVFAL-KEIGVEDSIGIFKKSS---------KPLVISGEGHRI----P-FDGNTFDFVFVGG  176 (518)
Q Consensus       113 ll~~~~rvLDVGcGt-G~~~~~L-~~~g~~~v~gID~s~~---------~~l~~~~da~~L----P-f~D~SFD~V~s~~  176 (518)
                      .+++++.||-+|+|+ |..+..+ +..|...++++|.++.         ...++..+.+..    . ....-+|+|+...
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~  108 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFV  108 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEec
Confidence            468999999999998 5554444 4467678999998641         111221111100    0 1234599999765


Q ss_pred             ceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          177 ARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .       -...++...+.|||||++++.
T Consensus       109 g-------~~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2         109 G-------SQATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             C-------CHHHHHHGGGGEEEEEEEEEC
T ss_pred             C-------cchHHHHHHHHHhCCCEEEEE
Confidence            3       124688899999999998874

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.2  Score=43.21  Aligned_cols=88  Identities=15%  Similarity=0.095  Sum_probs=57.3

Q ss_pred             HHHHcCCCCCCCeEEEEcC-CC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCCC--------CCC
Q 010086          107 DLISEGYLSQSAKSLCVET-QY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRIP--------FDG  166 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGc-Gt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~LP--------f~D  166 (518)
                      -|.+.+-+++|++||-.|+ |. |..+..+++ .| .+|++++.++..         ..++  |..+..        ...
T Consensus        19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~~~~~~~~~~~~~Ga~~vi--~~~~~~~~~~i~~~t~~   95 (174)
T d1yb5a2          19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQKIVLQNGAHEVF--NHREVNYIDKIKKYVGE   95 (174)
T ss_dssp             HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTCSEEE--ETTSTTHHHHHHHHHCT
T ss_pred             HHHHHhCCCCCCEEEEEeccccccccccccccccC-cccccccccccccccccccCccccc--ccccccHHHHhhhhhcc
Confidence            3455666899999999997 43 566655554 57 589998865311         1111  111111        235


Q ss_pred             CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          167 NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       167 ~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ..||+|+....        ...+.+..++|||||.++..
T Consensus        96 ~g~d~v~d~~g--------~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          96 KGIDIIIEMLA--------NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             TCEEEEEESCH--------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCceEEeeccc--------HHHHHHHHhccCCCCEEEEE
Confidence            66999998653        24578889999999998874

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.24  Score=47.11  Aligned_cols=61  Identities=3%  Similarity=-0.005  Sum_probs=43.0

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC---------------CCcEEeccCCCCCCCC---CceeEEE
Q 010086          114 LSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS---------------KPLVISGEGHRIPFDG---NTFDFVF  173 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D---~SFD~V~  173 (518)
                      .++|.+|||+++|+|.-+..+++.  +...++++|+++.               ...+...|...++-.+   +.||.|+
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL  171 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  171 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence            578999999999999977766652  3468999998742               1123456666654333   5799999


Q ss_pred             E
Q 010086          174 V  174 (518)
Q Consensus       174 s  174 (518)
                      .
T Consensus       172 ~  172 (293)
T d2b9ea1         172 L  172 (293)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.27  E-value=0.094  Score=44.96  Aligned_cols=85  Identities=8%  Similarity=0.005  Sum_probs=52.5

Q ss_pred             CCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCC-----CCCCCceeEEEEc
Q 010086          112 GYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRI-----PFDGNTFDFVFVG  175 (518)
Q Consensus       112 gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~L-----Pf~D~SFD~V~s~  175 (518)
                      .-++++++||-+|+|+ |..+..+.+ .| .+|+++|.++..         ..++....++.     ....+.+|.|.+.
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~  101 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTA  101 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECC
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccc
Confidence            3478999999999988 666655544 67 699999986421         11121111110     0112334555554


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ..       + ..+....+.|||||++++.
T Consensus       102 ~~-------~-~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2         102 VS-------N-SAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             SC-------H-HHHHHHHTTEEEEEEEEEC
T ss_pred             cc-------c-hHHHHHHHHhcCCcEEEEE
Confidence            32       2 4578899999999998774

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=91.89  E-value=0.46  Score=41.22  Aligned_cols=96  Identities=10%  Similarity=0.117  Sum_probs=55.9

Q ss_pred             HHHHHHHHcCCCCCCCeEEEEcCCC-CHhHHHH-HhcCCCcEEEEecCCCC---------CcEEeccCCCC-------CC
Q 010086          103 SVFQDLISEGYLSQSAKSLCVETQY-GQDVFAL-KEIGVEDSIGIFKKSSK---------PLVISGEGHRI-------PF  164 (518)
Q Consensus       103 ~l~~~L~~~gll~~~~rvLDVGcGt-G~~~~~L-~~~g~~~v~gID~s~~~---------~l~~~~da~~L-------Pf  164 (518)
                      .-++-+.+.+-+++|++||-+|||. |..+..+ +..|...|+++|.++..         ..++.....+-       -.
T Consensus        14 Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~   93 (174)
T d1p0fa2          14 TGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEK   93 (174)
T ss_dssp             HHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHH
T ss_pred             HHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHh
Confidence            3344455666789999999999997 4444433 44687799999987531         11121111110       01


Q ss_pred             CCCceeEEEEcCceeeccCChHHHHHHHHhccc-CCcEEEEE
Q 010086          165 DGNTFDFVFVGGARLEKASKPLDFASEIVRTLK-PEGFAVVH  205 (518)
Q Consensus       165 ~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLK-PGG~lvi~  205 (518)
                      .+.-+|.|+-.-.       ....+.+..+.++ ++|.+++.
T Consensus        94 ~~~G~d~vid~~g-------~~~~~~~~~~~~~~~~G~~v~v  128 (174)
T d1p0fa2          94 TNGGVDYAVECAG-------RIETMMNALQSTYCGSGVTVVL  128 (174)
T ss_dssp             TTSCBSEEEECSC-------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             cCCCCcEEEEcCC-------CchHHHHHHHHHHHhcCceEEE
Confidence            2345888886543       1234555666554 56887775

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=91.30  E-value=0.25  Score=48.60  Aligned_cols=28  Identities=25%  Similarity=0.207  Sum_probs=24.0

Q ss_pred             EeccCCCCCCCCCceeEEEEcCceeeccC
Q 010086          155 ISGEGHRIPFDGNTFDFVFVGGARLEKAS  183 (518)
Q Consensus       155 ~~~da~~LPf~D~SFD~V~s~~~~l~~~~  183 (518)
                      +-|....--||++|.|+++|+.+ +||++
T Consensus       126 vpGSFY~rLfP~~Slh~~~Ss~a-lHWLS  153 (359)
T d1m6ex_         126 VPGSFYGRLFPRNTLHFIHSSYS-LMWLS  153 (359)
T ss_dssp             EESCSSSCCSCTTCBSCEEEESC-TTBCS
T ss_pred             cCCchhhhcCCCCceEEeeehhh-hhhhh
Confidence            35677777899999999999998 99975

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.00  E-value=0.41  Score=40.88  Aligned_cols=96  Identities=15%  Similarity=0.120  Sum_probs=59.1

Q ss_pred             HHHHHHHcCCCCCCCeEEEEcCCC-CHhHH-HHHhcCCCcEEEEecCCCC---------CcEEeccCCCCC-------CC
Q 010086          104 VFQDLISEGYLSQSAKSLCVETQY-GQDVF-ALKEIGVEDSIGIFKKSSK---------PLVISGEGHRIP-------FD  165 (518)
Q Consensus       104 l~~~L~~~gll~~~~rvLDVGcGt-G~~~~-~L~~~g~~~v~gID~s~~~---------~l~~~~da~~LP-------f~  165 (518)
                      ..+-+.+.+-+++|++||-.|||. |..+. .++..|...|+++|.++..         ..++......-+       ..
T Consensus        16 ay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~   95 (176)
T d2fzwa2          16 GYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMT   95 (176)
T ss_dssp             HHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHT
T ss_pred             HHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHc
Confidence            344456667789999999999985 33333 3344687789999976531         111111111000       11


Q ss_pred             CCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          166 GNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       166 D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      .+-+|+|+....       ....++.+...+++||.+++..
T Consensus        96 ~~g~D~vid~~G-------~~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          96 DGGVDYSFECIG-------NVKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             TSCBSEEEECSC-------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCcEeeecCC-------CHHHHHHHHHhhcCCceeEEEE
Confidence            345899997653       2356788899999998766543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.79  E-value=0.36  Score=41.24  Aligned_cols=87  Identities=17%  Similarity=0.098  Sum_probs=55.0

Q ss_pred             CCCCCCCeEEEEcCC-C-CHhHH-HHHhcCCCcEEEEecCCCC---------CcEEeccCCCC-----C-CCCCceeEEE
Q 010086          112 GYLSQSAKSLCVETQ-Y-GQDVF-ALKEIGVEDSIGIFKKSSK---------PLVISGEGHRI-----P-FDGNTFDFVF  173 (518)
Q Consensus       112 gll~~~~rvLDVGcG-t-G~~~~-~L~~~g~~~v~gID~s~~~---------~l~~~~da~~L-----P-f~D~SFD~V~  173 (518)
                      .-++++++||-+|++ . |..+. .++..|...|+++|.++..         ...+..+.++.     . -....||+|+
T Consensus        23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vi  102 (170)
T d1jvba2          23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVI  102 (170)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred             hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhh
Confidence            457899999999974 3 44443 3445677799999976421         11221111110     0 1235699999


Q ss_pred             EcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ....       -...++.+.+.|||||++++.
T Consensus       103 d~~g-------~~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2         103 DLNN-------SEKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             ESCC-------CHHHHTTGGGGEEEEEEEEEC
T ss_pred             cccc-------cchHHHhhhhhcccCCEEEEe
Confidence            8653       235577889999999998775

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.41  E-value=0.13  Score=44.26  Aligned_cols=87  Identities=16%  Similarity=0.164  Sum_probs=54.6

Q ss_pred             cCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCC-CCCCCCceeEEEEcCce
Q 010086          111 EGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHR-IPFDGNTFDFVFVGGAR  178 (518)
Q Consensus       111 ~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~-LPf~D~SFD~V~s~~~~  178 (518)
                      ..-+++|++||-+|+|+ |..+..+++ .| .+++++|.++..         ..++...... ..-....+|.|+.... 
T Consensus        25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~G-a~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g-  102 (168)
T d1uufa2          25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAMG-AHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA-  102 (168)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS-
T ss_pred             HhCCCCCCEEEEeccchHHHHHHHHhhccc-ccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeee-
Confidence            34579999999999987 666655554 56 577788876421         1112111100 0112346999987543 


Q ss_pred             eeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          179 LEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      -.      ..+....+.|+|||++++.
T Consensus       103 ~~------~~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2         103 AP------HNLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             SC------CCHHHHHTTEEEEEEEEEC
T ss_pred             cc------hhHHHHHHHHhcCCEEEEe
Confidence            11      2367788999999998885

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.22  E-value=0.67  Score=39.17  Aligned_cols=52  Identities=12%  Similarity=0.026  Sum_probs=36.2

Q ss_pred             ccHHHHHhhcCCCCCeEEEEee---ccchhhhhHHHHHhcCCcccccEEEEEeeccc
Q 010086          427 FDFADWLKNTVTDKDFVVMKMD---VEGTEFDLIPRLFETGAICLIDEIFLECHYNR  480 (518)
Q Consensus       427 vd~s~wl~~~v~~~D~VVlKMD---IEGaE~~vL~~l~~~g~i~~IDeLfvE~H~~~  480 (518)
                      -|...|++.....-|+  +=+|   -++.-.++|+.+.+.+.+..=..+++|++...
T Consensus        71 ~D~~~~l~~~~~~fDi--If~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~~  125 (152)
T d2esra1          71 MEAERAIDCLTGRFDL--VFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTV  125 (152)
T ss_dssp             SCHHHHHHHBCSCEEE--EEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             ccccccccccccccce--eEechhhccchHHHHHHHHHHCCCcCCCeEEEEEeCCCC
Confidence            3677777765556675  4557   35556678888877887777667899987543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.83  E-value=0.69  Score=40.14  Aligned_cols=95  Identities=18%  Similarity=0.213  Sum_probs=54.3

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCC-CHhH-HHHHhcCCCcEEEEecCCCC---------CcEEec-cCCCC------CCCC
Q 010086          105 FQDLISEGYLSQSAKSLCVETQY-GQDV-FALKEIGVEDSIGIFKKSSK---------PLVISG-EGHRI------PFDG  166 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGt-G~~~-~~L~~~g~~~v~gID~s~~~---------~l~~~~-da~~L------Pf~D  166 (518)
                      ++-+...+-+++|+.||-+|||. |..+ ..++..|..+|+++|.++..         ..++.. +....      -...
T Consensus        18 ~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g   97 (176)
T d1d1ta2          18 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTG   97 (176)
T ss_dssp             HHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHT
T ss_pred             HHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhcc
Confidence            33445556689999999999997 4444 33445677899999987531         112211 11100      0123


Q ss_pred             CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          167 NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       167 ~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      .-+|.|+-...      .+.....-+..+++++|.+++.
T Consensus        98 ~G~d~vi~~~g------~~~~~~~a~~~~~~~~G~~v~v  130 (176)
T d1d1ta2          98 NNVGYTFEVIG------HLETMIDALASCHMNYGTSVVV  130 (176)
T ss_dssp             SCCCEEEECSC------CHHHHHHHHTTSCTTTCEEEEC
T ss_pred             ccceEEEEeCC------chHHHHHHHHHhhcCCeEEEEE
Confidence            45888887543      1323333344555666887775

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.72  E-value=0.21  Score=45.83  Aligned_cols=56  Identities=21%  Similarity=0.206  Sum_probs=42.2

Q ss_pred             ccccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhc----cCCceEEEe
Q 010086          313 DISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK----VKKKVKLLP  374 (518)
Q Consensus       313 d~s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~----~~~~V~~~~  374 (518)
                      .+.++|+.-++|+|++. |.++ ..+.+.+|..    .|||+|.+|...+...    ..+|+..+.
T Consensus        69 ~l~ikpG~~VLDlGcGs-G~~~-~~la~~~~~g----~V~aVDiS~~~i~~a~~~a~~~~ni~~i~  128 (230)
T d1g8sa_          69 VMPIKRDSKILYLGASA-GTTP-SHVADIADKG----IVYAIEYAPRIMRELLDACAERENIIPIL  128 (230)
T ss_dssp             CCCCCTTCEEEEESCCS-SHHH-HHHHHHTTTS----EEEEEESCHHHHHHHHHHTTTCTTEEEEE
T ss_pred             hCCCCCCCEEEEeCEEc-CHHH-HHHHHhCCCC----EEEEEeCcHHHHHHHHHHHhhhcccceEE
Confidence            45688999999999994 8766 7888888854    8999999998655433    346665443

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=89.41  E-value=0.25  Score=50.67  Aligned_cols=135  Identities=14%  Similarity=0.072  Sum_probs=73.4

Q ss_pred             CCCCCeEEEEcCCCCHhHHHHHh----cCC---------------CcEEEEecCCCC--------------Cc------E
Q 010086          114 LSQSAKSLCVETQYGQDVFALKE----IGV---------------EDSIGIFKKSSK--------------PL------V  154 (518)
Q Consensus       114 l~~~~rvLDVGcGtG~~~~~L~~----~g~---------------~~v~gID~s~~~--------------~l------~  154 (518)
                      ..++.+|+|-+||+|.+.....+    ...               ..++|+|+++..              ..      .
T Consensus       162 ~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~  241 (524)
T d2ar0a1         162 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI  241 (524)
T ss_dssp             CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred             CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchh
Confidence            45678999999999998744322    110               258999986310              00      1


Q ss_pred             EeccCCCC-CCCCCceeEEEEcCcee--ecc-----------CCh-HHHHHHHHhcccCCcEEEEEecCCCcc-C--chh
Q 010086          155 ISGEGHRI-PFDGNTFDFVFVGGARL--EKA-----------SKP-LDFASEIVRTLKPEGFAVVHVRAKDEY-S--FNS  216 (518)
Q Consensus       155 ~~~da~~L-Pf~D~SFD~V~s~~~~l--~~~-----------~dp-~~~l~Ei~RVLKPGG~lvi~~~~~~~~-s--~~~  216 (518)
                      ..++...- .+....||+|+++-= |  ...           .+. ..++.-+.+.|||||++++.+...-.+ +  ...
T Consensus       242 ~~~~~l~~d~~~~~kfD~Ii~NPP-fg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~  320 (524)
T d2ar0a1         242 RLGNTLGSDGENLPKAHIVATNPP-FGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTD  320 (524)
T ss_dssp             EESCTTSHHHHTSCCEEEEEECCC-CTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHH
T ss_pred             hhhhhhhhcccccccceeEEecCC-ccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhhhhhhHH
Confidence            11111111 124567999998752 2  110           111 247899999999999988876433211 1  112


Q ss_pred             Hhh-hccCccEEEEeccC--CC-CCCccceeEEEEeec
Q 010086          217 FLD-LFNSCKLVKSRDID--GI-DSSLPYIREIVLKKE  250 (518)
Q Consensus       217 ~~~-lf~~~~~v~~~~v~--~~-~~~~p~~~~vv~kK~  250 (518)
                      +++ |..++.+..+-...  .| +-.+|+ ..++++|.
T Consensus       321 iR~~Ll~~~~i~aII~LP~~~F~~t~i~t-~Il~l~K~  357 (524)
T d2ar0a1         321 IRRDLMDKCHLHTILRLPTGIFYAQGVKT-NVLFFTKG  357 (524)
T ss_dssp             HHHHHHHHEEEEEEEECCSSCSSSCSCCE-EEEEEEEB
T ss_pred             HHHHHHHcCCceEEEECCCCcCCCCCCCe-EEEEEECC
Confidence            332 34555554443322  23 334544 35677775

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.02  E-value=0.37  Score=42.35  Aligned_cols=92  Identities=13%  Similarity=0.105  Sum_probs=59.4

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCCC--HhHHHHHh-cCCCcEEEEecCCCC---------CcEEec---cCCC-CCCCCCce
Q 010086          106 QDLISEGYLSQSAKSLCVETQYG--QDVFALKE-IGVEDSIGIFKKSSK---------PLVISG---EGHR-IPFDGNTF  169 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGtG--~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~---da~~-LPf~D~SF  169 (518)
                      +.|.+.+.+++|.+||--|++.|  ..+..+++ .| .+|+++.-++..         ..++..   +.+. ....++.|
T Consensus        21 ~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~G-a~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gv   99 (176)
T d1xa0a2          21 HRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRG-YTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRW   99 (176)
T ss_dssp             HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCE
T ss_pred             HHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcC-CceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCc
Confidence            45777788889999999997765  44455554 56 688888765421         111211   1111 23356789


Q ss_pred             eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          170 DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      |+|+-.-.        ...+.+..++|||||+++..-
T Consensus       100 D~vid~vg--------g~~~~~~l~~l~~~Griv~~G  128 (176)
T d1xa0a2         100 AAAVDPVG--------GRTLATVLSRMRYGGAVAVSG  128 (176)
T ss_dssp             EEEEECST--------TTTHHHHHHTEEEEEEEEECS
T ss_pred             CEEEEcCC--------chhHHHHHHHhCCCceEEEee
Confidence            99987643        124788999999999998763

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.84  E-value=0.17  Score=50.11  Aligned_cols=87  Identities=15%  Similarity=0.148  Sum_probs=61.0

Q ss_pred             CCCeEEEEcCCCCHhHHH-HHhcCCCcEEEEecCCCC------------------------------CcEEeccCCCCCC
Q 010086          116 QSAKSLCVETQYGQDVFA-LKEIGVEDSIGIFKKSSK------------------------------PLVISGEGHRIPF  164 (518)
Q Consensus       116 ~~~rvLDVGcGtG~~~~~-L~~~g~~~v~gID~s~~~------------------------------~l~~~~da~~LPf  164 (518)
                      .+.+|||..||+|..+.. ..+.|...|+..|+++..                              ..+...|+..+..
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            467999999999998864 455677799999997410                              0012334333322


Q ss_pred             -CCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          165 -DGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       165 -~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                       ....||+|..--  |   -.|..++.-+.|.+|.||.+.++..
T Consensus       125 ~~~~~fDvIDiDP--f---Gs~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         125 ERHRYFHFIDLDP--F---GSPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HSTTCEEEEEECC--S---SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhcCcCCcccCCC--C---CCcHHHHHHHHHHhccCCEEEEEec
Confidence             235699887643  2   3477899999999999999999853

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=88.04  E-value=0.67  Score=40.14  Aligned_cols=91  Identities=13%  Similarity=0.110  Sum_probs=60.2

Q ss_pred             HHHHHcCCCCCCCeEEEEcCCC--CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEec----cCCCCCCCCCce
Q 010086          106 QDLISEGYLSQSAKSLCVETQY--GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISG----EGHRIPFDGNTF  169 (518)
Q Consensus       106 ~~L~~~gll~~~~rvLDVGcGt--G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~----da~~LPf~D~SF  169 (518)
                      +.|...+.++++..||--|++.  |..+..|++ .| .+|+++.-++..         ..++..    .........+.+
T Consensus        13 ~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~G-a~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gv   91 (167)
T d1tt7a2          13 HRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRG-YDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQW   91 (167)
T ss_dssp             HHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHT-CCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCE
T ss_pred             HHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcC-CceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCc
Confidence            4567778888888899888654  455555555 57 689999876532         112211    122223456779


Q ss_pred             eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          170 DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      |.|+..-.        ...+.+..+.|+|||++++.
T Consensus        92 d~vid~vg--------g~~~~~~~~~l~~~G~iv~~  119 (167)
T d1tt7a2          92 QGAVDPVG--------GKQLASLLSKIQYGGSVAVS  119 (167)
T ss_dssp             EEEEESCC--------THHHHHHHTTEEEEEEEEEC
T ss_pred             eEEEecCc--------HHHHHHHHHHhccCceEEEe
Confidence            99887643        24678999999999998875

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.95  E-value=0.19  Score=43.65  Aligned_cols=85  Identities=15%  Similarity=0.082  Sum_probs=52.3

Q ss_pred             HcCCCCCCCeEEEEcC-CC-CHhHHHHHh-cCCCcEEEEecCCCCC---------cEEec-c-CCCCCCCCCceeEEEEc
Q 010086          110 SEGYLSQSAKSLCVET-QY-GQDVFALKE-IGVEDSIGIFKKSSKP---------LVISG-E-GHRIPFDGNTFDFVFVG  175 (518)
Q Consensus       110 ~~gll~~~~rvLDVGc-Gt-G~~~~~L~~-~g~~~v~gID~s~~~~---------l~~~~-d-a~~LPf~D~SFD~V~s~  175 (518)
                      .++.+++|++||-.|+ |. |..+..+++ .| .+|++++.++...         .++.. + ...+ -....+|+|+..
T Consensus        21 ~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G-~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~-~~~~g~D~v~d~   98 (171)
T d1iz0a2          21 KRAQARPGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEKLALPLALGAEEAATYAEVPERA-KAWGGLDLVLEV   98 (171)
T ss_dssp             HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHH-HHTTSEEEEEEC
T ss_pred             HHhCCCCCCEEEEEeccccchhhhhhhhcccc-cccccccccccccccccccccceeeehhhhhhhh-hccccccccccc
Confidence            3456899999999995 44 566655555 56 5899999764311         11110 0 0000 012459999874


Q ss_pred             CceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          176 GARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ..         ..+....+.|+|||.++..
T Consensus        99 ~G---------~~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          99 RG---------KEVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             SC---------TTHHHHHTTEEEEEEEEEC
T ss_pred             cc---------hhHHHHHHHHhcCCcEEEE
Confidence            32         1256788999999998764

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.59  E-value=0.4  Score=43.14  Aligned_cols=56  Identities=18%  Similarity=0.277  Sum_probs=41.5

Q ss_pred             ccccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhh----ccCCceEEEe
Q 010086          313 DISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEY----KVKKKVKLLP  374 (518)
Q Consensus       313 d~s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~----~~~~~V~~~~  374 (518)
                      .+.++|+..++|+|++. |... ..+.+..|..    +||++|.+|...+..    ...+|+..+-
T Consensus        51 ~l~lkpg~~VLDlGcG~-G~~~-~~la~~v~~g----~V~gvDis~~~i~~a~~~a~~~~ni~~i~  110 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAAS-GTTV-SHLADIVDEG----IIYAVEYSAKPFEKLLELVRERNNIIPLL  110 (209)
T ss_dssp             CCCCCSSCEEEEETCTT-SHHH-HHHHHHTTTS----EEEEECCCHHHHHHHHHHHHHCSSEEEEC
T ss_pred             cCCCCCCCEEEEeCCcC-CHHH-HHHHHhccCC----eEEEEeCCHHHHHHHHHHhhccCCceEEE
Confidence            46789999999999994 8644 6777777853    799999999865432    3456666554

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=86.40  E-value=1.2  Score=38.04  Aligned_cols=94  Identities=14%  Similarity=0.127  Sum_probs=56.3

Q ss_pred             HHHHHHcCCCCCCCeEEEEcCCCCH-hH-HHHHhcCCCcEEEEecCCCC---------CcEEe-ccCCCC------CCCC
Q 010086          105 FQDLISEGYLSQSAKSLCVETQYGQ-DV-FALKEIGVEDSIGIFKKSSK---------PLVIS-GEGHRI------PFDG  166 (518)
Q Consensus       105 ~~~L~~~gll~~~~rvLDVGcGtG~-~~-~~L~~~g~~~v~gID~s~~~---------~l~~~-~da~~L------Pf~D  166 (518)
                      .+-+.+.+-+++|+.||-+|+|.+- .+ ..++..|...|+++|.++..         ...+. .+..+.      -..+
T Consensus        17 y~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~   96 (176)
T d2jhfa2          17 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSN   96 (176)
T ss_dssp             HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred             HHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhc
Confidence            3445566779999999999998633 22 44455677899999987531         11111 111110      0123


Q ss_pred             CceeEEEEcCceeeccCChHHHHHHHHhcccCCc-EEEEE
Q 010086          167 NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEG-FAVVH  205 (518)
Q Consensus       167 ~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG-~lvi~  205 (518)
                      +-+|+|+.... -      ...+....+.+++|| .+++.
T Consensus        97 ~G~D~vid~~G-~------~~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          97 GGVDFSFEVIG-R------LDTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             SCBSEEEECSC-C------HHHHHHHHHHBCTTTCEEEEC
T ss_pred             CCCCEEEecCC-c------hhHHHHHHHHHhcCCcceEEe
Confidence            46899887654 2      234666777888875 44443

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.44  E-value=0.96  Score=38.62  Aligned_cols=90  Identities=20%  Similarity=0.151  Sum_probs=55.2

Q ss_pred             HHHHcCCCCCCCeEEEEcC-CC-CHhHHHHHh-cCCCcEEEEecCCC---------CCcEEeccCCCC------CCCCCc
Q 010086          107 DLISEGYLSQSAKSLCVET-QY-GQDVFALKE-IGVEDSIGIFKKSS---------KPLVISGEGHRI------PFDGNT  168 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGc-Gt-G~~~~~L~~-~g~~~v~gID~s~~---------~~l~~~~da~~L------Pf~D~S  168 (518)
                      -|.+.+-+++|++||-.|. |. |..+..+++ .| .++++++-++.         ...++....+++      -....-
T Consensus        16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g-~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g   94 (183)
T d1pqwa_          16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYG   94 (183)
T ss_dssp             HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCC
T ss_pred             HHHHHhCCCCCCEEEEECCCCCcccccchhhcccc-ccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCC
Confidence            3455666899999999884 33 566655554 56 57777775421         111121111110      012456


Q ss_pred             eeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          169 FDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      ||+|+....        ...+++..++|||+|+++..
T Consensus        95 ~d~v~d~~g--------~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          95 VDVVLNSLA--------GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             EEEEEECCC--------THHHHHHHHTEEEEEEEEEC
T ss_pred             EEEEEeccc--------chHHHHHHHHhcCCCEEEEE
Confidence            999998653        23578889999999998774

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=85.13  E-value=0.2  Score=45.79  Aligned_cols=53  Identities=11%  Similarity=0.117  Sum_probs=35.1

Q ss_pred             EeccCCCC--CCCCCceeEEEEcCc---eee-------ccCChHHHHHHHHhcccCCcEEEEEec
Q 010086          155 ISGEGHRI--PFDGNTFDFVFVGGA---RLE-------KASKPLDFASEIVRTLKPEGFAVVHVR  207 (518)
Q Consensus       155 ~~~da~~L--Pf~D~SFD~V~s~~~---~l~-------~~~dp~~~l~Ei~RVLKPGG~lvi~~~  207 (518)
                      +.||..++  -+||+|+|+|++.-=   .+.       +.......+.|+.|+|||||.+++...
T Consensus         8 ~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~   72 (279)
T d1eg2a_           8 DVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG   72 (279)
T ss_dssp             EECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence            44554443  467999999998641   011       111234678999999999999988653

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=83.66  E-value=1.9  Score=36.53  Aligned_cols=96  Identities=9%  Similarity=0.030  Sum_probs=55.2

Q ss_pred             HHHHHHHcCCCCCCCeEEEEcCCCCHh-H-HHHHhcCCCcEEEEecCCCC---------CcEEeccCCCC-------CCC
Q 010086          104 VFQDLISEGYLSQSAKSLCVETQYGQD-V-FALKEIGVEDSIGIFKKSSK---------PLVISGEGHRI-------PFD  165 (518)
Q Consensus       104 l~~~L~~~gll~~~~rvLDVGcGtG~~-~-~~L~~~g~~~v~gID~s~~~---------~l~~~~da~~L-------Pf~  165 (518)
                      .++-+.+.+-++++++||-+|+|.+-. + ..++..|...|+++|.++..         ..++....++-       .-.
T Consensus        16 ay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~   95 (175)
T d1cdoa2          16 GFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMT   95 (175)
T ss_dssp             HHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHH
T ss_pred             HHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhc
Confidence            334455666789999999999998443 3 34455676789999987531         11221111110       011


Q ss_pred             CCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          166 GNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       166 D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      ..-+|+|+-...       ....+......+++||..++..
T Consensus        96 ~~G~d~vid~~G-------~~~~~~~a~~~~~~g~~~~~~~  129 (175)
T d1cdoa2          96 NGGVDFSLECVG-------NVGVMRNALESCLKGWGVSVLV  129 (175)
T ss_dssp             TSCBSEEEECSC-------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             cCCcceeeeecC-------CHHHHHHHHHHhhCCCcceeEE
Confidence            234888887653       2234566667766665444433

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.11  E-value=0.63  Score=41.40  Aligned_cols=55  Identities=15%  Similarity=0.213  Sum_probs=40.1

Q ss_pred             ccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH----hhcc-CCceEEEee
Q 010086          315 SFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE----EYKV-KKKVKLLPY  375 (518)
Q Consensus       315 s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~----~~~~-~~~V~~~~~  375 (518)
                      ..+++.+||||++| .|. .+..+.+.+|..    .|++||.||...+    .+.. ..++++++.
T Consensus        20 ~~~~~~~~lD~t~G-~Gg-hs~~il~~~~~~----~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~   79 (192)
T d1m6ya2          20 KPEDEKIILDCTVG-EGG-HSRAILEHCPGC----RIIGIDVDSEVLRIAEEKLKEFSDRVSLFKV   79 (192)
T ss_dssp             CCCTTCEEEETTCT-TSH-HHHHHHHHCTTC----EEEEEESCHHHHHHHHHHTGGGTTTEEEEEC
T ss_pred             CCCCCCEEEEecCC-CcH-HHHHHHhcCCCC----eEEEeechHHHHHHHHHhhccccccccchhH
Confidence            35688999999998 464 567888889854    7999999998643    2332 346776663

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=82.18  E-value=1.9  Score=36.91  Aligned_cols=90  Identities=12%  Similarity=0.089  Sum_probs=57.8

Q ss_pred             HHHHcCCCCCCCeEEEEcCCC--CHhHHHHHh-cCCCcEEEEecCCC---------CCcEEeccCCCC------CCCCCc
Q 010086          107 DLISEGYLSQSAKSLCVETQY--GQDVFALKE-IGVEDSIGIFKKSS---------KPLVISGEGHRI------PFDGNT  168 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGcGt--G~~~~~L~~-~g~~~v~gID~s~~---------~~l~~~~da~~L------Pf~D~S  168 (518)
                      -|.+.+-+++|++||-.|++.  |..+..+++ .| .+|++++-++.         ...++..+.++.      -....-
T Consensus        20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~G-a~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~G   98 (182)
T d1v3va2          20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDG   98 (182)
T ss_dssp             HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred             HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccC-CEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCC
Confidence            345566689999999999876  445556655 45 69999986632         111221111110      113346


Q ss_pred             eeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086          169 FDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH  205 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~  205 (518)
                      +|+|+..-.        .+.+++..+.|+|||.+++.
T Consensus        99 vd~v~D~vG--------~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          99 YDCYFDNVG--------GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             EEEEEESSC--------HHHHHHHGGGEEEEEEEEEC
T ss_pred             CceeEEecC--------chhhhhhhhhccCCCeEEee
Confidence            999987643        24688999999999998874

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.91  E-value=0.88  Score=39.46  Aligned_cols=54  Identities=22%  Similarity=0.228  Sum_probs=37.4

Q ss_pred             cccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh-------hccCCceEEEee
Q 010086          314 ISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE-------YKVKKKVKLLPY  375 (518)
Q Consensus       314 ~s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~-------~~~~~~V~~~~~  375 (518)
                      +..+++..++|+|++. |. ++-++.+..+      +|+++|.||...+.       +...++|+++..
T Consensus        29 l~~~~g~~VLDiGcGs-G~-~s~~lA~~~~------~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~g   89 (186)
T d1l3ia_          29 AEPGKNDVAVDVGCGT-GG-VTLELAGRVR------RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG   89 (186)
T ss_dssp             HCCCTTCEEEEESCTT-SH-HHHHHHTTSS------EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES
T ss_pred             cCCCCCCEEEEEECCe-Ec-ccccccccce------EEEEecCCHHHHHHHHHHHHHcCCCcceEEEEC
Confidence            4567899999999994 74 5456655433      79999999986432       222368887763

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=81.83  E-value=0.92  Score=41.53  Aligned_cols=55  Identities=15%  Similarity=0.146  Sum_probs=41.7

Q ss_pred             ccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh----hccCCceEEEeece
Q 010086          315 SFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE----YKVKKKVKLLPYAA  377 (518)
Q Consensus       315 s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~----~~~~~~V~~~~~Av  377 (518)
                      ..++.+.++++|+| .| +++..+.+. ++     .|+|+|.|+.+.+.    +.+.+|++++..-+
T Consensus        18 ~~~~~d~VlEIGpG-~G-~LT~~Ll~~-~~-----~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~   76 (235)
T d1qama_          18 RLNEHDNIFEIGSG-KG-HFTLELVQR-CN-----FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDI   76 (235)
T ss_dssp             CCCTTCEEEEECCT-TS-HHHHHHHHH-SS-----EEEEECSCHHHHHHHHHHTTTCCSEEEECCCG
T ss_pred             CCCCCCeEEEECCC-ch-HHHHHHHhC-cC-----ceEEEeeccchHHHHHHHhhcccchhhhhhhh
Confidence            35678899999999 58 487666654 32     79999999998654    44678999988643

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=81.35  E-value=1.6  Score=36.99  Aligned_cols=91  Identities=16%  Similarity=0.108  Sum_probs=57.7

Q ss_pred             HHHHcCCCCCCCeEEEEcCCC--CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCC-----C-CCCCc
Q 010086          107 DLISEGYLSQSAKSLCVETQY--GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRI-----P-FDGNT  168 (518)
Q Consensus       107 ~L~~~gll~~~~rvLDVGcGt--G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~L-----P-f~D~S  168 (518)
                      -|.+.+-+++|++||-.|+|.  |..+..+++ .| .+|++++.++..         ..++....+++     . -...-
T Consensus        19 al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~G-a~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g   97 (179)
T d1qora2          19 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKK   97 (179)
T ss_dssp             HHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCC
T ss_pred             HHHHHhCCCCCCEEEEEccccccchHHHHHHHHhC-CeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCC
Confidence            455556689999999998776  555555555 56 689999987421         11221111110     0 12457


Q ss_pred             eeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086          169 FDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV  206 (518)
Q Consensus       169 FD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~  206 (518)
                      +|+|+....        ...+....+.|+|+|.+++..
T Consensus        98 ~d~v~d~~g--------~~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          98 VRVVYDSVG--------RDTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             EEEEEECSC--------GGGHHHHHHTEEEEEEEEECC
T ss_pred             eEEEEeCcc--------HHHHHHHHHHHhcCCeeeecc
Confidence            899887653        124678899999999877653

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=80.29  E-value=1  Score=40.21  Aligned_cols=120  Identities=22%  Similarity=0.159  Sum_probs=69.0

Q ss_pred             CceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh----hc--cCCceEEEeecee-----ecCCceEE
Q 010086          318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE----YK--VKKKVKLLPYAAW-----VRNETLSF  386 (518)
Q Consensus       318 ~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~----~~--~~~~V~~~~~Av~-----~~~~tl~f  386 (518)
                      ++++++|+|.| .|..+ ..+.+.+|..    .++++|.++.....    ..  +.+||+++..-+.     ..++++..
T Consensus        29 ~~PlvLeIGcG-~G~~~-~~lA~~~p~~----~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~  102 (204)
T d2fcaa1          29 DNPIHIEVGTG-KGQFI-SGMAKQNPDI----NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKR  102 (204)
T ss_dssp             CCCEEEEECCT-TSHHH-HHHHHHCTTS----EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCE
T ss_pred             CCceEEEEEec-CcHHH-HHHHHhCCCC----cEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhc
Confidence            57899999999 58755 6778889954    89999999874332    21  4678988876331     11222221


Q ss_pred             --EecCCCCcchhhcccCCccccccccCCCCCCCCCcceeecccHHHHHhhcCCCCCeEEEEeeccchhhhhHHHHHhcC
Q 010086          387 --QINHDPDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETG  464 (518)
Q Consensus       387 --~~~~~~~~~~~~~~~g~~~i~p~~~~~~~~~~g~~~~v~~vd~s~wl~~~v~~~D~VVlKMDIEGaE~~vL~~l~~~g  464 (518)
                        ..-.+|....                .    ... ..+-.-.+.+-+...++++=...+.-|.+.-=-.+++.+.+.+
T Consensus       103 v~i~fp~P~~k~----------------~----h~k-~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~  161 (204)
T d2fcaa1         103 VYLNFSDPWPKK----------------R----HEK-RRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYG  161 (204)
T ss_dssp             EEEESCCCCCSG----------------G----GGG-GSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             cccccccccchh----------------h----hcc-hhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCC
Confidence              1111111100                0    000 0011124555566667778888899999874334566655544