Citrus Sinensis ID: 010141

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------
Protein Sequence
MADKVSLSVESNKDNPMANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSPSYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLANFHHTRPTSDAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERIMQQKKAKQHQLQRQVSDGKPSDVIIDDKDKDAASAKDRVQKSQEETLVKELALIETIGDVKKLEENGSAATVEDAVKGAKSAVSSGKKGTSNGVGSAC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHccEEEccccHHHHHHHHHHHHHHccccccEEEEEcccccccEEEEEEEcccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHcccccccccHHHHHccccHHHcccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccEEEcccHHcccccHccccccccEEEEEEEccccccccEEEEEEEEccccccHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEEccccccccccEEEEccccccccEEEEEEEEcccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHccccccccHccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccEEccc
Coil and Loop (DISEMBL)
MADKVSLSvesnkdnpmangpgvsgngrskpqrpnyqypyldpnsshgrgglstvvpspsyqdpgysfdgihspitwldtsifgggqskhnanagytspishsnnfpsgrnqnhrphlanfhhtrptsdafgymsqmyannpmyghygntfragpgygsfgydswisgrgwypvdskykprgrgygasgsgkenvdglnelnkgprakgfknqegfdpatvaakgqnlkssestpednlplipdkekysgedfpesysdAKFFIIKsyseddvhksvkynmwtstpngnkKLDAAYREAkekssdcpvfLLFSVNASGQFVgvaemvgpvdfdkTVEYWQqdkwvgcfplkwliikdvpnsslrhitlennenkpvtnsrdtqeVNFEIGIQILKIFKshsskrcilddfgFYEARERIMQQKKAKQHQlqrqvsdgkpsdviiddkdkdaaSAKDRVQKSQEETLVKELALIETIGDVkkleengsaatVEDAVKGAKSavssgkkgtsngvgsac
Flexible Loop (DISEMBL)
madkvslsvesnkdnpmangpgvsgngrskpQRPNYQYPYLDPNSSHGRGGLSTVVPSPSYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLANFHHTRPTSDAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRgygasgsgkenvdglNELNKGPRAKGFKNQEGFDPATVAAKgqnlkssestpednlplipdkekysgedFPESYSDAKFFIIKSYSEDDVHKSVKynmwtstpngnKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHitlennenkpvtnsrdtqevNFEIGIQILKifkshsskrcILDDFGFYEARERIMQQKKAkqhqlqrqvsdgkpsdviiddkdkdaasakdrvqksqeetlVKELALIETIGDVKKLEENGSAATVEDAVKGAksavssgkkgtsngvgsac
Low Complexity Region (SEG)
MADKVSLSVESNKDNPMANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSPSYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLANFHHTRPTSDAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERIMQQKKAKQHQLQRQVSDGKPSDVIIddkdkdaasakdRVQKSQEETLVKELALIETIGDVKKLEENGSAATVEDavkgaksavssgkkgTSNGVGSAC
Disordered region (IsUnstruct)
****************************************************************GYSFDGIHSPITWLDTSIFGG*******************************************DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSK*********************************************************************************DAKFFIIKSYSEDDVHKSVKYNMWT*********************DCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT****************EVNFEIGIQILKIFKSHSSKRCILDDFGFYEAR**************************************************VKELALIETIGD***************************************
Disordered Region (DISOPRED)
*************************************************************************************************************************************************************************************************************************************************************PESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGF*********************************************************************************************************
Disordered Region (DISEMBL)
************KDNPMANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSPSYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLANFHHTRPTSDAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVA***************NLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAA*********DCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERI*******************PSDVIIDDKDK*************EETLVKELALIETIGDVKKLEENGSAAT***************************
Disordered Region (DISPRO)
************************************QYPYLDPNSSHGRGGLSTVVPSPSYQDPGYSFDGIHSPITWLDTSIFG***************************************************Q*YANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPR*RGYG*******NVDGL**************************************DNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERIMQQKKAK*******************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADKVSLSVESNKDNPMANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSPSYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLANFHHTRPTSDAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERIMQQKKAKQHQLQRQVSDGKPSDVIxxxxxxxxxxxxxxxxxxxxxTLVKELALIETIGDVKKLEENGSAATVEDAVKGAKSAVSSGKKGTSNGVGSAC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	517	2.2.26 [Sep-21-2011]
Q4R5D9	579	YTH domain family protein	N/A	no	0.367	0.328	0.535	1e-53
Q0VCZ3	580	YTH domain family protein	yes	no	0.367	0.327	0.535	1e-53
Q9Y5A9	579	YTH domain family protein	yes	no	0.367	0.328	0.535	1e-53
P59326	559	YTH domain family protein	no	no	0.323	0.298	0.558	4e-51
Q9BYJ9	559	YTH domain family protein	no	no	0.323	0.298	0.552	1e-50
Q8BYK6	585	YTH domain family protein	no	no	0.317	0.280	0.556	4e-49
Q5RFL8	585	YTH domain family protein	no	no	0.317	0.280	0.556	5e-49
Q7Z739	585	YTH domain family protein	no	no	0.317	0.280	0.556	5e-49
Q06390	306	YTH domain-containing pro	yes	no	0.286	0.483	0.414	2e-27
Q96MU7	727	YTH domain-containing pro	no	no	0.257	0.182	0.324	6e-15

>sp|Q4R5D9|YTHD2_MACFA YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1

 Score =  211 bits (537), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/196 (53%), Positives = 129/196 (65%), Gaps = 6/196 (3%)

Query: 225 GQNLKSSESTPEDNLPLIPDKEK---YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNM 281
           GQ+   S STP +  P++        Y+ +DF  +    + FIIKSYSEDD+H+S+KYN+
Sbjct: 372 GQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNI 431

Query: 282 WTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQ 341
           W ST +GNK+LDAAYR    K    PV+LLFSVN SG F GVAEM   VD++     W Q
Sbjct: 432 WCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQ 488

Query: 342 DKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHS 401
           DKW G F ++W+ +KDVPNS LRHI LENNENKPVTNSRDTQEV  E   Q+LKI  S+ 
Sbjct: 489 DKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYK 548

Query: 402 SKRCILDDFGFYEARE 417
               I DDF  YE R+
Sbjct: 549 HTTSIFDDFSHYEKRQ 564

Macaca fascicularis (taxid: 9541)

>sp|Q0VCZ3|YTHD2_BOVIN YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1

 Score =  211 bits (537), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/196 (53%), Positives = 128/196 (65%), Gaps = 6/196 (3%)

Query: 225 GQNLKSSESTPEDNLPLIPDKEK---YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNM 281
           GQ    S STP +  P++        Y+ +DF  +    + FIIKSYSEDD+H+S+KYN+
Sbjct: 373 GQTQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNI 432

Query: 282 WTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQ 341
           W ST +GNK+LDAAYR    K    PV+LLFSVN SG F GVAEM   VD++     W Q
Sbjct: 433 WCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQ 489

Query: 342 DKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHS 401
           DKW G F ++W+ +KDVPNS LRHI LENNENKPVTNSRDTQEV  E   Q+LKI  S+ 
Sbjct: 490 DKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYK 549

Query: 402 SKRCILDDFGFYEARE 417
               I DDF  YE R+
Sbjct: 550 HTTSIFDDFSHYEKRQ 565

Bos taurus (taxid: 9913)

>sp|Q9Y5A9|YTHD2_HUMAN YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2

 Score =  211 bits (537), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/196 (53%), Positives = 129/196 (65%), Gaps = 6/196 (3%)

Query: 225 GQNLKSSESTPEDNLPLIPDKEK---YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNM 281
           GQ+   S STP +  P++        Y+ +DF  +    + FIIKSYSEDD+H+S+KYN+
Sbjct: 372 GQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNI 431

Query: 282 WTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQ 341
           W ST +GNK+LDAAYR    K    PV+LLFSVN SG F GVAEM   VD++     W Q
Sbjct: 432 WCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQ 488

Query: 342 DKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHS 401
           DKW G F ++W+ +KDVPNS LRHI LENNENKPVTNSRDTQEV  E   Q+LKI  S+ 
Sbjct: 489 DKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYK 548

Query: 402 SKRCILDDFGFYEARE 417
               I DDF  YE R+
Sbjct: 549 HTTSIFDDFSHYEKRQ 564

Homo sapiens (taxid: 9606)

>sp|P59326|YTHD1_MOUSE YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1

 Score =  202 bits (514), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 119/170 (70%), Gaps = 3/170 (1%)

Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
           Y+ ++F  +    + FIIKSYSEDD+H+S+KY++W ST +GNK+LD A+R     SS  P
Sbjct: 377 YNPKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSM---SSKGP 433

Query: 308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
           V+LLFSVN SG F GVAEM  PVD+  +   W QDKW G F +KW+ +KDVPN+ LRHI 
Sbjct: 434 VYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIR 493

Query: 368 LENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEARE 417
           LENN+NKPVTNSRDTQEV  E   Q+LKI  S+     I DDF  YE R+
Sbjct: 494 LENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQ 543

Mus musculus (taxid: 10090)

>sp|Q9BYJ9|YTHD1_HUMAN YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1

 Score =  201 bits (511), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 120/170 (70%), Gaps = 3/170 (1%)

Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
           Y+ ++F  +    + FIIKSYSEDD+H+S+KY++W ST +GNK+LD+A+R     SS  P
Sbjct: 377 YNPKEFEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCM---SSKGP 433

Query: 308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
           V+LLFSVN SG F GVAEM  PVD+  +   W QDKW G F ++W+ +KDVPN+ LRHI 
Sbjct: 434 VYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIR 493

Query: 368 LENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEARE 417
           LENN+NKPVTNSRDTQEV  E   Q+LKI  S+     I DDF  YE R+
Sbjct: 494 LENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQ 543

Homo sapiens (taxid: 9606)

>sp|Q8BYK6|YTHD3_MOUSE YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2

 Score =  196 bits (497), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/167 (55%), Positives = 116/167 (69%), Gaps = 3/167 (1%)

Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
           Y+ +DF  +  + + FIIKSYSEDD+H+S+KY++W ST +GNK+LDAAYR    K    P
Sbjct: 404 YNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---P 460

Query: 308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
           ++LLFSVN SG F GVAEM   VD++     W QDKW G F +KW+ +KDVPN+ LRHI 
Sbjct: 461 LYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIR 520

Query: 368 LENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYE 414
           LENN+NKPVTNSRDTQEV  E   Q+LKI  +      I DDF  YE
Sbjct: 521 LENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYE 567

Mus musculus (taxid: 10090)

>sp|Q5RFL8|YTHD3_PONAB YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1

 Score =  196 bits (497), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 93/167 (55%), Positives = 116/167 (69%), Gaps = 3/167 (1%)

Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
           Y+ +DF  +  + + FIIKSYSEDD+H+S+KY++W ST +GNK+LDAAYR    K    P
Sbjct: 404 YNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---P 460

Query: 308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
           ++LLFSVN SG F GVAEM   VD++     W QDKW G F +KW+ +KDVPN+ LRHI 
Sbjct: 461 LYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIR 520

Query: 368 LENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYE 414
           LENN+NKPVTNSRDTQEV  E   Q+LKI  +      I DDF  YE
Sbjct: 521 LENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYE 567

Pongo abelii (taxid: 9601)

>sp|Q7Z739|YTHD3_HUMAN YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1

 Score =  196 bits (497), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 93/167 (55%), Positives = 116/167 (69%), Gaps = 3/167 (1%)

Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
           Y+ +DF  +  + + FIIKSYSEDD+H+S+KY++W ST +GNK+LDAAYR    K    P
Sbjct: 404 YNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---P 460

Query: 308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
           ++LLFSVN SG F GVAEM   VD++     W QDKW G F +KW+ +KDVPN+ LRHI 
Sbjct: 461 LYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIR 520

Query: 368 LENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYE 414
           LENN+NKPVTNSRDTQEV  E   Q+LKI  +      I DDF  YE
Sbjct: 521 LENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYE 567

Homo sapiens (taxid: 9606)

>sp|Q06390|YD374_YEAST YTH domain-containing protein YDR374C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR374C PE=4 SV=1

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 9/157 (5%)

Query: 259 DAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASG 318
           +++FF+IKS S   V +S    +W+ST  GNK+L  AY   K+ +S   VFL FS+N SG
Sbjct: 154 NSRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAY---KKLNSGAKVFLFFSINTSG 210

Query: 319 QFVGVAEMVGPVDFDKTVEYWQQDKWVG-CFPLKWLIIKDVPNSSLRHITLENNENKPVT 377
           +F GVAEMV  +  D     W+ ++  G  F ++W+I++D+ N SL+   + +NE KP+T
Sbjct: 211 RFCGVAEMVSDLKMDLDTSIWEDEQKYGKAFKVRWVIVRDINNRSLKRFLIPSNEMKPIT 270

Query: 378 NSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYE 414
           +SRDTQE+ + IGI I+ +FK+  S     D F F +
Sbjct: 271 HSRDTQEIPYSIGISIINLFKTQDS-----DIFSFLD 302

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3

 Score = 82.8 bits (203), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 76/145 (52%), Gaps = 12/145 (8%)

Query: 259 DAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASG 318
           DA+FF+IKS + ++V  +    +W++ P   KKL+ A+R A+       V L+FSV  SG
Sbjct: 354 DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRESG 407

Query: 319 QFVGVAEMVGPVDFDKTVEYW-----QQDKWVG-CFPLKWLIIKDVPNSSLRHITLENNE 372
           +F G A +        +  +W        K +G  F + W+  +++P +   H+T   NE
Sbjct: 408 KFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 467

Query: 373 NKPVTNSRDTQEVNFEIGIQILKIF 397
           +KPV   RD QE+  E G Q+  +F
Sbjct: 468 HKPVKIGRDGQEIELECGTQLCLLF 492

May be part of a signal transduction pathway that influences splice site selection.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	517
297739755	694	unnamed protein product [Vitis vinifera]	0.976	0.727	0.599	1e-167
255568928	677	yth domain-containing protein, putative	0.926	0.707	0.540	1e-149
356525319	707	PREDICTED: uncharacterized protein LOC10	0.978	0.715	0.526	1e-141
225435800	705	PREDICTED: uncharacterized protein LOC10	0.969	0.710	0.543	1e-140
147861284	696	hypothetical protein VITISV_009052 [Viti	0.882	0.655	0.535	1e-138
359481843	646	PREDICTED: uncharacterized protein LOC10	0.883	0.707	0.531	1e-137
357519269	677	YTH domain family protein [Medicago trun	0.928	0.709	0.522	1e-136
224145982	553	predicted protein [Populus trichocarpa]	0.742	0.694	0.609	1e-132
297746505	675	unnamed protein product [Vitis vinifera]	0.876	0.671	0.558	1e-132
118489688	615	unknown [Populus trichocarpa x Populus d	0.829	0.697	0.577	1e-132

>gi|297739755|emb|CBI29937.3| unnamed protein product [Vitis vinifera]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 317/529 (59%), Positives = 382/529 (72%), Gaps = 24/529 (4%)

Query: 3   DKVSLSVESNKDNPMANGPGVSGNGRSKPQ--RPNYQYPYLDPNSSHGRGGLSTVVPSPS 60
           D+V LSVE+ K N      G + NG + P+  RP++Q   L  N S+GR  L T VPS  
Sbjct: 176 DQVPLSVEAAKGNTNNLVNGGNVNGNNGPKALRPSHQNSSLSSNGSYGRASLPTGVPSSG 235

Query: 61  YQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLAN 120
           YQDP + FDG  S I   D  +F  GQSKH A+ G++SP+SH+NNFPSGRNQN RP +  
Sbjct: 236 YQDPRFGFDGTRSLIPSAD--MFSEGQSKHVASVGFSSPVSHANNFPSGRNQNFRP-IPQ 292

Query: 121 FHHTRPTS---DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSK 177
             H R  S    A G+MS+MY NN MY  YGN FR G G+GS GYDS  SGRGW  VDS+
Sbjct: 293 LMHARAASGLGQASGFMSRMYPNNRMYDQYGNAFRTGSGFGSNGYDSRTSGRGWLTVDSR 352

Query: 178 YKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLK--SSESTP 235
           Y+ + R     G G EN+DGLNELN+GPRAKGFKNQ+GF P T+A +GQNL+   + S  
Sbjct: 353 YRNKSRANSVLGYGNENMDGLNELNRGPRAKGFKNQKGFGPVTLAVRGQNLQLNGNNSNS 412

Query: 236 EDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAA 295
           + NL L+PDKE+Y+ EDFPE+YSDAKFFIIKSYSEDDVHKS+KYNMW ST NGNKKLDAA
Sbjct: 413 DGNLTLVPDKEQYNSEDFPENYSDAKFFIIKSYSEDDVHKSIKYNMWASTANGNKKLDAA 472

Query: 296 YREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLII 355
           Y+EA+ KS  CP+FLLFSVNASGQFVGVAEMVG VDF++++EYWQQDKW GCFP+KW +I
Sbjct: 473 YQEAQGKSGSCPIFLLFSVNASGQFVGVAEMVGSVDFNRSLEYWQQDKWTGCFPVKWHVI 532

Query: 356 KDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEA 415
           KD+PNS L+HITLENNENKPVTNSRDTQEV FE GIQ+LKIFK+HSSK  ILDDFGFYEA
Sbjct: 533 KDIPNSLLKHITLENNENKPVTNSRDTQEVKFEQGIQVLKIFKNHSSKTTILDDFGFYEA 592

Query: 416 RERIMQQKKAKQHQLQRQ----VSDGKPSDVIIDDKDKDAASAKDRVQKSQE--ETLVKE 469
           R+R MQ+KKAKQ   Q+Q    V D KP+D +  D        KDR+ +S +   +L+KE
Sbjct: 593 RQRTMQEKKAKQQLFQKQARILVRDVKPTDGVATDD-------KDRLHQSVDVASSLIKE 645

Query: 470 -LALIETIGDVKKLEENGSAATVEDAVKGAKSAVSSGKKGTSNGVGSAC 517
               ++  G++K LEE GSAA  +DA K AK  V S K+   NGV +AC
Sbjct: 646 PTGPVKANGELKALEEIGSAAVADDAPKSAKPDVLSEKRVVPNGVANAC 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568928|ref|XP_002525434.1| yth domain-containing protein, putative [Ricinus communis] gi|223535247|gb|EEF36924.1| yth domain-containing protein, putative [Ricinus communis]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 285/527 (54%), Positives = 354/527 (67%), Gaps = 48/527 (9%)

Query: 2   ADKVSLSVESNKDNP--MANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSP 59
           ADK +LSV +   NP    N   V+ +   KP RP+ Q    + + ++  GGL T  PS 
Sbjct: 188 ADKAALSVGTAGGNPNNAVNSGCVNRSNGPKPFRPSNQNSSSNFSGAYKSGGLQTGFPSS 247

Query: 60  SYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLA 119
            Y DP + +D   SP+ WLD  ++    + H  N G +SP+                   
Sbjct: 248 GYHDPRFGYDAFQSPMPWLDAPMYSNAPAGHAMNTGLSSPL------------------- 288

Query: 120 NFHHTRPTS---DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDS 176
           N H TRP S      G M+ MY +N MYG YG  +RAG G+GSFG +SW +GRGW  VD+
Sbjct: 289 NLHPTRPISGLGQGSGAMNLMYPDNRMYGQYG--YRAGAGFGSFGANSWTNGRGWVVVDN 346

Query: 177 KYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPE 236
           KYKP+ RGYG      EN+DGL+ELN+GPRAKGF+N   F P + A +GQNL  S++T E
Sbjct: 347 KYKPKARGYG-----NENIDGLSELNRGPRAKGFRNHTEFGPVSQAVQGQNLPLSDNTKE 401

Query: 237 DNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAY 296
           DN   +PD E+Y+ EDFPE YS+AKFF+IKSYSEDDVHKS+KY +W ST NGNKKLDAAY
Sbjct: 402 DNSSQVPDNEQYNREDFPEDYSNAKFFVIKSYSEDDVHKSIKYGVWASTANGNKKLDAAY 461

Query: 297 REAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIK 356
            EAKE S  CP+FLLFSVN SGQFVG+AEMVGPVDF+KTVEYWQQ+KW+GCFP+KW IIK
Sbjct: 462 HEAKETSGGCPIFLLFSVNTSGQFVGLAEMVGPVDFNKTVEYWQQEKWIGCFPVKWHIIK 521

Query: 357 DVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEAR 416
           DVPN+SLRH+TLENNENKPVTNSRDTQEV FE GIQ+LKIFK H  K  ILDDF FY AR
Sbjct: 522 DVPNNSLRHVTLENNENKPVTNSRDTQEVIFEKGIQMLKIFKGHRCKTSILDDFEFYAAR 581

Query: 417 ERIMQQKKAKQHQLQRQVSDGKPSDVIIDDKDKDAASAKDRVQKSQEETLVKELALIETI 476
           ERIMQ+K+AKQ ++Q+QV DGKP    IDD++ +        QKS  ++++KE  +   +
Sbjct: 582 ERIMQEKRAKQ-KIQKQVLDGKP----IDDQNNNKEKVAMVSQKS-TDSMLKEPVVAAAV 635

Query: 477 ------GDVKKLEENGSAATVEDAVKGAKSAVSSGKKGTSNGVGSAC 517
                 G+V+ +E NGS A+VE++   AKS VSS  K     V SAC
Sbjct: 636 ESGKISGEVRVVEANGSGASVENSPNDAKSVVSSESK-----VASAC 677

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525319|ref|XP_003531272.1| PREDICTED: uncharacterized protein LOC100819200 isoform 1 [Glycine max]

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 277/526 (52%), Positives = 350/526 (66%), Gaps = 20/526 (3%)

Query: 2   ADKVSLSVES--NKDNPMANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSP 59
           AD+  L VE+     N ++NG    GN  + P +   Q       +S+ R  +    P+ 
Sbjct: 192 ADQKPLPVEAANGNSNGVSNGGNAKGNNAAAPIKQANQNSSFSSKASNERVAMPGRGPTS 251

Query: 60  SYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRP--H 117
            YQDP + +DG+ SPI WLD  +F  GQ +  ++   TS IS  NN  S R+Q  RP   
Sbjct: 252 GYQDPRFGYDGVRSPIPWLDAPLFSDGQPRPVSSTTITSSISGGNNTAS-RSQTFRPNSQ 310

Query: 118 LANFHHTRPTSDAFG----YMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYP 173
               HH RP   A G    ++++MY N  +YG YGNT R+G GYG+ GYDS  +GR W  
Sbjct: 311 FMGLHHPRPMP-AMGATHSFINRMYPNK-LYGQYGNTVRSGMGYGTHGYDSRANGRAWLA 368

Query: 174 VDSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSES 233
           VDSKYK RGR  G  G G ENVDGLNELN+GPRAKG KNQ+GF P  +A KGQNL +S  
Sbjct: 369 VDSKYKTRGRSGGYFGYGNENVDGLNELNRGPRAKGGKNQKGFAPTILAVKGQNLPASLG 428

Query: 234 TPE--DNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKK 291
           T E  D    +PD+++Y+  DFPE Y+DAKFF+IKSYSEDD+HKS+KYN+W ST NGNKK
Sbjct: 429 TDEEKDKTSTVPDRDQYNKADFPEEYTDAKFFVIKSYSEDDIHKSIKYNVWASTQNGNKK 488

Query: 292 LDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLK 351
           LDAAY EA++K   CPVFL FSVN SGQFVG+AEM+GPVDF+K+VEYWQQDKW GCFPLK
Sbjct: 489 LDAAYHEAQQKPGGCPVFLFFSVNTSGQFVGLAEMIGPVDFNKSVEYWQQDKWNGCFPLK 548

Query: 352 WLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFG 411
           W ++KDVPN+ LRHITL+NNENKPVTNSRDTQEV  E G++++KIFK ++SK CILDDFG
Sbjct: 549 WHVVKDVPNNLLRHITLDNNENKPVTNSRDTQEVMLEPGLKLIKIFKEYTSKTCILDDFG 608

Query: 412 FYEARERIMQQKKAKQHQLQRQVSDGKPSDVIIDDKDKDAASAKDRVQKSQEETLVKELA 471
           FYEAR++ + +KKAKQ Q  +QV +GKP+D  I+       + +   QKS+  + V + +
Sbjct: 609 FYEARQKTILEKKAKQ-QFPKQVWEGKPADEKIE------INGEVNTQKSEVSSEVLKES 661

Query: 472 LIETIGDVKKLEENGSAATVEDAVKGAKSAVSSGKKGTSNGVGSAC 517
           L E   D  K+ ENG A    DA KGAK  V   K   +  V + C
Sbjct: 662 LAEKDSDDHKVPENGCATKTGDAPKGAKPVVPESKIVANGVVSNGC 707

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435800|ref|XP_002285750.1| PREDICTED: uncharacterized protein LOC100253534 [Vitis vinifera]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 288/530 (54%), Positives = 361/530 (68%), Gaps = 29/530 (5%)

Query: 2   ADKVSLSVES--NKDNPMANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSP 59
           AD+  LSVE+     N +A+G  + GN  S P +P YQ    + N S+GRG L   VP+ 
Sbjct: 191 ADQKPLSVETANGNSNGIASGGAMKGNNGSAPVKPTYQNSPFNSNGSYGRGALPGGVPAS 250

Query: 60  SYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLA 119
            YQDP ++FDG+ SP+ WLD  +F     +   +   TS IS++NN  + RN     H  
Sbjct: 251 GYQDPRFAFDGLRSPLPWLDGPVFS--DPRPVTSTSITSSISNANNVTASRNLRPHSHFM 308

Query: 120 NFHHTRPTS---DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDS 176
              H RP S    A G+M++MY N  +YG YGNT R+G G+GS  YDS  +GR W  VD+
Sbjct: 309 GLQHPRPMSGMGTAHGFMNRMYPNK-LYGQYGNTVRSGLGFGSNAYDSRTNGRSWLAVDN 367

Query: 177 KYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPE 236
           KYKPRGRG G  G G EN+DGLNELN+GPRAK  KNQ+G  P T  AKGQN++S+ S  E
Sbjct: 368 KYKPRGRGIGFFGYGNENMDGLNELNRGPRAKSSKNQKGLAPVT--AKGQNVQSNGSNDE 425

Query: 237 --DNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDA 294
             D   + PD+++Y+  DFP  +++AKFFIIKSYSEDDVHKS+KYN+W STPNGNKKLDA
Sbjct: 426 EKDRTSVFPDRDQYNHADFPVEHTEAKFFIIKSYSEDDVHKSIKYNVWASTPNGNKKLDA 485

Query: 295 AYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLI 354
           AYREA+EKS+ CPVFL FSVN SGQFVG+AEMVG VDF K VEYWQQDKW GCF +KW +
Sbjct: 486 AYREAQEKSAGCPVFLFFSVNTSGQFVGLAEMVGHVDFHKNVEYWQQDKWNGCFSVKWHV 545

Query: 355 IKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYE 414
           +KDVPNS L+HITLENNENKPVTNSRDTQEV  E G+Q+LKIFK H SK CILDDF FYE
Sbjct: 546 VKDVPNSLLKHITLENNENKPVTNSRDTQEVKLEQGLQMLKIFKEHCSKTCILDDFAFYE 605

Query: 415 ARERIMQQKKAKQHQLQRQVSDGKPSDVIIDDKDKDAASAKDRVQKSQE--ETLVKE-LA 471
           +R++ +Q+KKAKQ Q Q+QV +GKP+         D  + + + QKS E    L+KE   
Sbjct: 606 SRQKTIQEKKAKQQQFQKQVWEGKPT---------DEKNGELKPQKSLEVASDLIKESTP 656

Query: 472 LIETIGDVKKLEENGSAATVEDAVKGAKSAVSSGKK----GTSNGVGSAC 517
            ++  GD +K+ ENGS A   DA K  K ++ S K+    G +NGV + C
Sbjct: 657 AVQANGD-RKVFENGSVAKSGDAPKAFKPSIVSEKRIVANGVANGVANGC 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147861284|emb|CAN81896.1| hypothetical protein VITISV_009052 [Vitis vinifera]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 281/525 (53%), Positives = 341/525 (64%), Gaps = 69/525 (13%)

Query: 3   DKVSLSVESNKDNPMANGPGVSGNGRSKPQ--RPNYQYPYLDPNSSHGRGGLSTVVPSPS 60
           D+V LSVE+ K N      G + NG + P+  RP++Q   L  N S+GR  L T VPS  
Sbjct: 231 DQVPLSVEAAKGNTNNLVNGGNVNGNNGPKALRPSHQNSSLSSNGSYGRASLPTGVPSSG 290

Query: 61  YQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLAN 120
           YQDP + FDG  S I   D  +F  GQSKH A+ G++SP+SH+NNFPSGRNQN RP +  
Sbjct: 291 YQDPRFGFDGTRSLIPSAD--MFSEGQSKHVASVGFSSPVSHANNFPSGRNQNFRP-IPQ 347

Query: 121 FHHTRPTS---DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSK 177
             H R  S    A G+MS+MY NN MY  YGN FR G G+GS GYDS  SGRGW  VDS+
Sbjct: 348 LMHARAASGLGQASGFMSRMYPNNRMYDQYGNAFRTGSGFGSNGYDSRTSGRGWLTVDSR 407

Query: 178 YKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLK--SSESTP 235
           Y+ + R     G G EN+DGLNELN+GPRAKGFKNQ+GF P T+A +GQNL+   + S  
Sbjct: 408 YRNKSRANSVJGYGNENMDGLNELNRGPRAKGFKNQKGFGPVTLAVRGQNLQLNGNNSNS 467

Query: 236 EDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAA 295
           + NL L+PDKE+Y+ EDFPE+YSDAKFFIIKSYSEDDVHKS+KYNMW ST NGNKKLDAA
Sbjct: 468 DGNLTLVPDKEQYNSEDFPENYSDAKFFIIKSYSEDDVHKSIKYNMWASTANGNKKLDAA 527

Query: 296 YREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLII 355
           Y+EA+ KS  CP+FLLFSVNASGQFVGVAEMVG VDF++++EYWQQDKW GCFP+KW +I
Sbjct: 528 YQEAQGKSGSCPIFLLFSVNASGQFVGVAEMVGSVDFNRSLEYWQQDKWTGCFPVKWHVI 587

Query: 356 KDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEA 415
           KD+PNS L+HITLENNENKPVTNSRDTQEV                              
Sbjct: 588 KDIPNSLLKHITLENNENKPVTNSRDTQEVR----------------------------- 618

Query: 416 RERIMQQKKAKQHQLQRQVSDGKPSDVIIDDKDKDAASAKDRVQKSQE--ETLVKE-LAL 472
                               D KP+D +  D        KDR+ +S +   +L+KE    
Sbjct: 619 --------------------DVKPTDGVATDD-------KDRLHQSVDVASSLIKEPTGP 651

Query: 473 IETIGDVKKLEENGSAATVEDAVKGAKSAVSSGKKGTSNGVGSAC 517
           ++  G++K LEE GSAA  +DA K AK  V S K+   NGV +AC
Sbjct: 652 VKANGELKALEEIGSAAVADDAPKSAKPDVLSEKRVVPNGVANAC 696

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481843|ref|XP_002276915.2| PREDICTED: uncharacterized protein LOC100245287 [Vitis vinifera]

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 281/529 (53%), Positives = 340/529 (64%), Gaps = 72/529 (13%)

Query: 3   DKVSLSVESNKDNPMANGPGVSGNGRSKPQ--RPNYQYPYLDPNSSHGRGGLSTVVPSPS 60
           D+V LSVE+ K N      G + NG + P+  RP++Q   L  N S+GR  L T VPS  
Sbjct: 176 DQVPLSVEAAKGNTNNLVNGGNVNGNNGPKALRPSHQNSSLSSNGSYGRASLPTGVPSSG 235

Query: 61  YQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRP---- 116
           YQDP + FDG  S I   D  +F  GQSKH A+ G++SP+SH+NNFPSGRNQN RP    
Sbjct: 236 YQDPRFGFDGTRSLIPSAD--MFSEGQSKHVASVGFSSPVSHANNFPSGRNQNFRPIPQL 293

Query: 117 HLANFHHTRPTS---DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYP 173
                 H R  S    A G+MS+MY NN MY  YGN FR G G+GS GYDS  SGRGW  
Sbjct: 294 MSLGLQHARAASGLGQASGFMSRMYPNNRMYDQYGNAFRTGSGFGSNGYDSRTSGRGWLT 353

Query: 174 VDSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLK--SS 231
           VDS+Y+ + R     G G EN+DGLNELN+GPRAKGFKNQ+GF P T+A +GQNL+   +
Sbjct: 354 VDSRYRNKSRANSVLGYGNENMDGLNELNRGPRAKGFKNQKGFGPVTLAVRGQNLQLNGN 413

Query: 232 ESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKK 291
            S  + NL L+PDKE+Y+ EDFPE+YSDAKFFIIKSYSEDDVHKS+KYNMW ST NGNKK
Sbjct: 414 NSNSDGNLTLVPDKEQYNSEDFPENYSDAKFFIIKSYSEDDVHKSIKYNMWASTANGNKK 473

Query: 292 LDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLK 351
           LDAAY+EA+ KS  CP+FLLFSVNASGQFVGVAEMVG VDF++++EYWQQDKW GCFP+K
Sbjct: 474 LDAAYQEAQGKSGSCPIFLLFSVNASGQFVGVAEMVGSVDFNRSLEYWQQDKWTGCFPVK 533

Query: 352 WLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFG 411
           W +IKD+PNS L+HITLENNENKPVTNSRDTQEV                          
Sbjct: 534 WHVIKDIPNSLLKHITLENNENKPVTNSRDTQEVR------------------------- 568

Query: 412 FYEARERIMQQKKAKQHQLQRQVSDGKPSDVIIDDKDKDAASAKDRVQKSQE--ETLVKE 469
                                   D KP+D +  D        KDR+ +S +   +L+KE
Sbjct: 569 ------------------------DVKPTDGVATDD-------KDRLHQSVDVASSLIKE 597

Query: 470 -LALIETIGDVKKLEENGSAATVEDAVKGAKSAVSSGKKGTSNGVGSAC 517
               ++  G++K LEE GSAA  +DA K AK  V S K+   NGV +AC
Sbjct: 598 PTGPVKANGELKALEEIGSAAVADDAPKSAKPDVLSEKRVVPNGVANAC 646

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519269|ref|XP_003629923.1| YTH domain family protein [Medicago truncatula] gi|355523945|gb|AET04399.1| YTH domain family protein [Medicago truncatula]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 277/530 (52%), Positives = 342/530 (64%), Gaps = 50/530 (9%)

Query: 2   ADKVSLSVESNKDNPMANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSPSY 61
           AD+  LSVE+   N  A   GV+  GR+             P S    GG         Y
Sbjct: 184 ADQKPLSVEAANGNTNAGTNGVNAKGRT-------------PTS----GG---------Y 217

Query: 62  QDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRP--HLA 119
           QDP Y FDG  SP  WLDT IF  GQ +  ++   +S IS  NN  + RNQ +RP     
Sbjct: 218 QDPRYGFDGARSPNLWLDTPIFSDGQPRPVSSTVISSSISSGNNGTASRNQTYRPNSQYM 277

Query: 120 NFHHTRPT---SDAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDS 176
             HH RP        G++++MY N   YG YGN+ R+G GYG+ GYDS  +GR W  VD+
Sbjct: 278 GLHHPRPIPAMGATPGFINRMYPNT-RYGQYGNSVRSGMGYGTHGYDSRTNGRAWLAVDN 336

Query: 177 KYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPE 236
           KYK RGR  G  G G EN DGLNELN+GPRAKG KNQ+ F P  +  KGQN+  +    E
Sbjct: 337 KYKTRGRNGGYFGYGNENTDGLNELNRGPRAKGGKNQKVFVPTVLTVKGQNVPVNTVDEE 396

Query: 237 -DNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAA 295
            +     PD+E+Y+  DFPE Y+DAKFF+IKSYSEDD+HKS+KYN+W ST NGNKKLDAA
Sbjct: 397 KEKNSTTPDREQYNKADFPEEYTDAKFFVIKSYSEDDIHKSIKYNVWASTQNGNKKLDAA 456

Query: 296 YREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLII 355
           Y+EA++KS  CP+FLLFSVN SGQFVG+AEM GPVDF+K++EYWQQDKW+GCFPLKW I+
Sbjct: 457 YQEAQQKSGGCPIFLLFSVNTSGQFVGLAEMTGPVDFNKSLEYWQQDKWMGCFPLKWHIV 516

Query: 356 KDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEA 415
           KDVPN+ LRHITLENNENKPVTNSRDTQE+  E G+++LKIFK +SSK CILDDFGFYE 
Sbjct: 517 KDVPNNVLRHITLENNENKPVTNSRDTQEIMLEPGLKLLKIFKEYSSKTCILDDFGFYEG 576

Query: 416 RERIMQQKKAKQHQLQRQ-------VSDGKPSDVIIDDKDKDAASAKDRVQKSQEET-LV 467
           R++ + +KKAKQ Q  +Q       V +GKP+D  I+       + +   QKS+  + L+
Sbjct: 577 RQKTILEKKAKQ-QFPKQARLSTIPVWEGKPTDEKIE------VNGETNTQKSEVNSELL 629

Query: 468 KELALIETIGDVKKLEENGSAATVEDAVKGAKSAVSSGKKGTSNGVGSAC 517
           KE  L +   D  K  ENG+  T  DA KGAK  VS  K    NGV + C
Sbjct: 630 KESTLAKD-NDDNKHSENGAVPTTGDAPKGAKPVVSESKI-VPNGVANGC 677

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145982|ref|XP_002325836.1| predicted protein [Populus trichocarpa] gi|222862711|gb|EEF00218.1| predicted protein [Populus trichocarpa]

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/412 (60%), Positives = 292/412 (70%), Gaps = 28/412 (6%)

Query: 120 NFHHTRPTS---DAFGYMSQMYANNPMYGHYGNTF------RAGPGYGSFGYDSWISGRG 170
           N H TRP S    A GYM+ M  NN MYG YGN        RAG  +GS+ Y+SW +GRG
Sbjct: 156 NTHPTRPISGMDQASGYMNLMNPNNRMYGQYGNRMYGQYGSRAGADFGSYAYNSWTNGRG 215

Query: 171 WYPVDSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKS 230
           W  VD+KYK RG GYG      EN DGLNELN+GPRAK F+N + F   T  A+GQNL  
Sbjct: 216 WVVVDNKYKSRGHGYG-----NENRDGLNELNRGPRAKSFRNHKEFGAVTQTAEGQNLPL 270

Query: 231 SESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNK 290
           SES  ++NL  IPD+E+Y+ EDFPE YSDAKFF+IKS+SEDDVHKS+KY++WTSTPNGNK
Sbjct: 271 SESNRDENLLQIPDREQYNKEDFPEEYSDAKFFVIKSFSEDDVHKSIKYSVWTSTPNGNK 330

Query: 291 KLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPL 350
           KLDAAY++ KE   DCPVFLLFSVN SGQFVG+AEMVGPVDF+KTVEYWQQDKW GCFPL
Sbjct: 331 KLDAAYKQGKENPGDCPVFLLFSVNTSGQFVGLAEMVGPVDFNKTVEYWQQDKWTGCFPL 390

Query: 351 KWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDF 410
           KW IIKDVPN  LRHITLENNENKPVTNSRDTQEV FE G+QILKIFK H  K  ILDDF
Sbjct: 391 KWHIIKDVPNGCLRHITLENNENKPVTNSRDTQEVIFEKGVQILKIFKDHKGKTSILDDF 450

Query: 411 GFYEARERIMQQKKAKQHQLQRQ-----VSDGKPSDVIIDDKDKDAASAKDRVQKSQEET 465
            FY  RERIMQ+K+AK H + +Q     +S+GK + +  +    DAAS K       E  
Sbjct: 451 SFYAGRERIMQEKRAK-HNIHKQARFASISEGKSAAIGKESLQTDAASIK-------EPA 502

Query: 466 LVKELALIETIGDVKKLEENGSAATVEDAVKGAKSAVSSGKKGTSNGVGSAC 517
               L  ++  G+V   EENGS  TVE++ + A SAVSS +    N V SAC
Sbjct: 503 GATPLESVKMNGEVNGKEENGSDLTVENSGRDATSAVSS-ENVAPNVVASAC 553

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746505|emb|CBI16561.3| unnamed protein product [Vitis vinifera]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 268/480 (55%), Positives = 333/480 (69%), Gaps = 27/480 (5%)

Query: 50  GGLSTVVPSPSYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSG 109
           G L   VP+  YQDP ++FDG+ SP+ WLD  +F     +   +   TS IS++NN  + 
Sbjct: 211 GALPGGVPASGYQDPRFAFDGLRSPLPWLDGPVFS--DPRPVTSTSITSSISNANNVTAS 268

Query: 110 RNQNHRPHLANFHHTRPTS---DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWI 166
           RN     H     H RP S    A G+M++MY N  +YG YGNT R+G G+GS  YDS  
Sbjct: 269 RNLRPHSHFMGLQHPRPMSGMGTAHGFMNRMYPNK-LYGQYGNTVRSGLGFGSNAYDSRT 327

Query: 167 SGRGWYPVDSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQ 226
           +GR W  VD+KYKPRGRG G  G G EN+DGLNELN+GPRAK  KNQ+G  P T  AKGQ
Sbjct: 328 NGRSWLAVDNKYKPRGRGIGFFGYGNENMDGLNELNRGPRAKSSKNQKGLAPVT--AKGQ 385

Query: 227 NLKSSESTPE--DNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTS 284
           N++S+ S  E  D   + PD+++Y+  DFP  +++AKFFIIKSYSEDDVHKS+KYN+W S
Sbjct: 386 NVQSNGSNDEEKDRTSVFPDRDQYNHADFPVEHTEAKFFIIKSYSEDDVHKSIKYNVWAS 445

Query: 285 TPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKW 344
           TPNGNKKLDAAYREA+EKS+ CPVFL FSVN SGQFVG+AEMVG VDF K VEYWQQDKW
Sbjct: 446 TPNGNKKLDAAYREAQEKSAGCPVFLFFSVNTSGQFVGLAEMVGHVDFHKNVEYWQQDKW 505

Query: 345 VGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKR 404
            GCF +KW ++KDVPNS L+HITLENNENKPVTNSRDTQEV  E G+Q+LKIFK H SK 
Sbjct: 506 NGCFSVKWHVVKDVPNSLLKHITLENNENKPVTNSRDTQEVKLEQGLQMLKIFKEHCSKT 565

Query: 405 CILDDFGFYEARERIMQQKKAKQHQLQRQVSDGKPSDVIIDDKDKDAASAKDRVQKSQE- 463
           CILDDF FYE+R++ +Q+KKAKQ Q Q+QV +GKP+         D  + + + QKS E 
Sbjct: 566 CILDDFAFYESRQKTIQEKKAKQQQFQKQVWEGKPT---------DEKNGELKPQKSLEV 616

Query: 464 -ETLVKE-LALIETIGDVKKLEENGSAATVEDAVKGAKSAVSSGKK----GTSNGVGSAC 517
              L+KE    ++  GD +K+ ENGS A   DA K  K ++ S K+    G +NGV + C
Sbjct: 617 ASDLIKESTPAVQANGD-RKVFENGSVAKSGDAPKAFKPSIVSEKRIVANGVANGVANGC 675

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489688|gb|ABK96645.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 260/450 (57%), Positives = 325/450 (72%), Gaps = 21/450 (4%)

Query: 2   ADKVSLSVESNKDNP--MANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSP 59
           AD+ SL VE+ K+N   +ANG  V G   + P +P YQ       +S+GRG  +  +P+ 
Sbjct: 168 ADQKSLPVETGKENSNGIANGGDVKGANGAVPYKPKYQ-------NSYGRGSYTKGIPAS 220

Query: 60  SYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQN--HRPH 117
            Y+D    FD +   I  LD+S+   G  +   N   +S  S ++N PS RNQN     H
Sbjct: 221 GYKDLRSCFDRLQPDIPLLDSSVLSDGLYR---NTDISSSFSKASNAPSSRNQNFHQNSH 277

Query: 118 LANFHHTRPTS---DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPV 174
              + H    S      GYM++MY+N  +YG YGN F++G G+GS GY++ I+G+GW P+
Sbjct: 278 FMGWQHPGLASGMGSTHGYMNRMYSNK-LYGQYGNGFKSGVGFGSGGYNAGINGQGWLPI 336

Query: 175 DSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKG-FKNQEGFDPATVAAKGQNLKSSES 233
           DSKYKP+G+G G  G   EN+DGLNELN+GPRAKG FKNQ+GF P+TVA KGQ++ SS++
Sbjct: 337 DSKYKPKGQGNGYFGFRNENIDGLNELNRGPRAKGYFKNQKGFVPSTVAVKGQSVPSSDA 396

Query: 234 TPE--DNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKK 291
             E  D    +PD+E+Y+  DFP  Y DAKFFIIKSYSEDDVHK +KYN+W STPNGNKK
Sbjct: 397 NAEEKDKTTEVPDREQYNKADFPVEYVDAKFFIIKSYSEDDVHKCIKYNVWASTPNGNKK 456

Query: 292 LDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLK 351
           LDAAY+EA +KS  CPVFLLFSVN SGQFVG+AEM G VDFDK+VEYWQQDKW G FP+K
Sbjct: 457 LDAAYQEAGQKSGGCPVFLLFSVNTSGQFVGLAEMTGRVDFDKSVEYWQQDKWTGYFPVK 516

Query: 352 WLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFG 411
           W  +KDVPNS L+HITLENNENKPVTNSRDTQEV  E G++++KIFK HSSK CILDDFG
Sbjct: 517 WHFVKDVPNSLLKHITLENNENKPVTNSRDTQEVKLEQGLEMIKIFKEHSSKTCILDDFG 576

Query: 412 FYEARERIMQQKKAKQHQLQRQVSDGKPSD 441
           FYE RE+++Q+KKAKQ QL++QV DGKPSD
Sbjct: 577 FYEDREKMIQEKKAKQQQLKKQVWDGKPSD 606

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	517
TAIR|locus:2092815	667	ECT2 "evolutionarily conserved	0.874	0.677	0.509	7.4e-122
TAIR|locus:2159391	495	ECT3 "AT5G61020" [Arabidopsis	0.624	0.652	0.585	2.5e-106
TAIR|locus:2095938	428	ECT1 "evolutionarily conserved	0.671	0.810	0.540	8.8e-102
TAIR|locus:2089280	634	ECT5 "AT3G13060" [Arabidopsis	0.551	0.449	0.546	1.4e-80
TAIR|locus:2088995	595	ECT6 "AT3G17330" [Arabidopsis	0.727	0.631	0.411	3e-69
TAIR|locus:2023807	639	ECT7 "AT1G48110" [Arabidopsis	0.439	0.355	0.533	4.2e-69
TAIR|locus:2010494	539	ECT9 "AT1G27960" [Arabidopsis	0.533	0.512	0.487	7.7e-68
TAIR|locus:2207405	528	ECT8 "AT1G79270" [Arabidopsis	0.481	0.471	0.518	2e-65
TAIR|locus:2161213	528	ECT10 "evolutionarily conserve	0.667	0.653	0.378	1.2e-60
TAIR|locus:2024286	470	ECT11 "AT1G09810" [Arabidopsis	0.622	0.685	0.404	7.3e-59

TAIR|locus:2092815 ECT2 "evolutionarily conserved C-terminal region 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1174 (418.3 bits), Expect = 7.4e-122, Sum P(2) = 7.4e-122
 Identities = 248/487 (50%), Positives = 325/487 (66%)

Query:    15 NPMANGPGVS-GNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSPSYQDPGYSFDGIHS 73
             N +A+  G++ G+  S P +P  Q      ++ +G G     + +  YQDP Y+++G ++
Sbjct:   192 NNVASAAGITKGSNGSAPVKPTNQATLNTSSNLYGMGAPGGGLAA-GYQDPRYAYEGYYA 250

Query:    74 PITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLANFHHT---RPTS-- 128
             P+ W D S +   Q +  + +G  S  S S+  PS RNQN+R   +N H+T   +P+S  
Sbjct:   251 PVPWHDGSKYSDVQ-RPVSGSGVASSYSKSSTVPSSRNQNYR---SNSHYTSVHQPSSVT 306

Query:   129 ---DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGY 185
                 A GY ++MY N  +YG YG+T R+  GYGS GYDS  +GRGW   D+KY+  GRG 
Sbjct:   307 GYGTAQGYYNRMYQNK-LYGQYGSTGRSALGYGSSGYDSRTNGRGWAATDNKYRSWGRGN 365

Query:   186 GASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSS--ESTPEDNLPLIP 243
                   + NVDGLNELN+GPRAKG KNQ+G    ++  K Q  +S+  E    DN  ++P
Sbjct:   366 SYYYGNENNVDGLNELNRGPRAKGTKNQKGNLDDSLEVKEQTGESNVTEVGEADNTCVVP 425

Query:   244 DKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKS 303
             D+E+Y+ EDFP  Y++A FFIIKSYSEDDVHKS+KYN+W STPNGNKKL AAY+EA++K+
Sbjct:   426 DREQYNKEDFPVDYANAMFFIIKSYSEDDVHKSIKYNVWASTPNGNKKLAAAYQEAQQKA 485

Query:   304 SDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSL 363
               CP+FL FSVNASGQFVG+AEM GPVDF+  VEYWQQDKW G FPLKW I+KDVPNS L
Sbjct:   486 GGCPIFLFFSVNASGQFVGLAEMTGPVDFNTNVEYWQQDKWTGSFPLKWHIVKDVPNSLL 545

Query:   364 RHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERIMQQK 423
             +HITLENNENKPVTNSRDTQEV  E G++I+KIFK HSSK CILDDF FYE R++ + +K
Sbjct:   546 KHITLENNENKPVTNSRDTQEVKLEQGLKIVKIFKEHSSKTCILDDFSFYEVRQKTILEK 605

Query:   424 KAKQHQLQRQVSDGKPSDVIIXXXXXXXXXXXXRVQKSQEETLVKEL-ALIETIGDVKKL 482
             KAKQ   Q+QVS+ K +D               + + +  E+  KE  A ++T  DVK +
Sbjct:   606 KAKQ--TQKQVSEEKVTD--------------EKKESATAESASKESPAAVQTSSDVK-V 648

Query:   483 EENGSAA 489
              ENGS A
Sbjct:   649 AENGSVA 655

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2159391 ECT3 "AT5G61020" [Arabidopsis thaliana (taxid:3702)]

 Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
 Identities = 195/333 (58%), Positives = 253/333 (75%)

Query:   102 HSNNFPSGRNQNHRPHLANFHHTRPTSDAFG-YMSQMYANNPMYGHYGNTFRAGPGYGSF 160
             ++ ++ SG+      +L     +     ++G YM  +Y+N  M G Y N    G GYGS+
Sbjct:   111 YTGSYASGKTNLQYQYLTQQGRSAGNGQSYGGYMDNIYSNYGMCGPYTN----GYGYGSY 166

Query:   161 GYDSWISGRGWYPVDSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPAT 220
             GYDSW     WY V++ YKPR  GY   G GKEN++GLNE+N+GPRAKGF +Q+G     
Sbjct:   167 GYDSWKYMPNWYAVNNTYKPRN-GY--HGYGKENIEGLNEMNRGPRAKGFNSQDGSKVMA 223

Query:   221 VAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYN 280
             V+ K Q +  +E   ED + L+  K+ Y+  DFPE+Y++AKF++IKSYSEDD+HKS+KY+
Sbjct:   224 VSLKEQRVTETEKLSED-VSLLDPKD-YNKIDFPETYTEAKFYVIKSYSEDDIHKSIKYS 281

Query:   281 MWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQ 340
             +W+STPNGNKKLDA+Y EAK+KS  CPVFLLFSVN SGQFVG+AEMVGPVDF+KTVEYWQ
Sbjct:   282 VWSSTPNGNKKLDASYNEAKQKSDGCPVFLLFSVNTSGQFVGLAEMVGPVDFNKTVEYWQ 341

Query:   341 QDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSH 400
             QDKW+GCFP+KW  +KD+PNSSLRHITLENNENKPVTNSRDTQEV  E GI+++KIFK H
Sbjct:   342 QDKWIGCFPVKWHFVKDIPNSSLRHITLENNENKPVTNSRDTQEVKLEQGIKVIKIFKDH 401

Query:   401 SSKRCILDDFGFYEARERIMQQKKAKQHQLQRQ 433
             +SK CILDDF FYE R++I+Q++K+K  Q+++Q
Sbjct:   402 ASKTCILDDFEFYENRQKIIQERKSKHLQIKKQ 434

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2095938 ECT1 "evolutionarily conserved C-terminal region 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
 Identities = 201/372 (54%), Positives = 252/372 (67%)

Query:    81 SIFGGGQSKHNANAGYTSPISHSNNFPS---G--RNQNHRP--HLANFHHTR--PTSDAF 131
             ++  GG S  +   GY      S  +P    G  RN NH    HL N H ++  P+ D  
Sbjct:    70 NLLNGGDSIGSYPWGYIPANYPSGGYPDPRFGYDRNSNHSSFSHLMNPHSSQEVPSFDQL 129

Query:   132 GYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGYGASGSG 191
             GY   +Y+N+ +YG YGN   +G  YG+FGYDSW  GRGWYPVD   K R   +G  G  
Sbjct:   130 GYNDHLYSNHGLYGLYGNVIDSGHAYGTFGYDSWKLGRGWYPVDGYRKTRSFNHGR-GYS 188

Query:   192 KENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKYSGE 251
              E  D LNEL +GPR+  FKN +  + + + A  Q++ +             D ++Y+GE
Sbjct:   189 DEKADRLNELCRGPRSSDFKNPQVLNSSMLDAMKQDVSAV------------DLQRYNGE 236

Query:   252 DFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLL 311
             +FPES+  AKFF+IKSYSEDDVH  +KY  W+STP GNKKL+AAY EAKE S +CPV+LL
Sbjct:   237 NFPESFVKAKFFVIKSYSEDDVHNCIKYGAWSSTPTGNKKLNAAYYEAKENSQECPVYLL 296

Query:   312 FSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENN 371
             FSVNASGQFVG+AEMVGPVDF+KT+EYWQQDKW+GCFP+KW IIKD+PNS LRHITL NN
Sbjct:   297 FSVNASGQFVGLAEMVGPVDFNKTMEYWQQDKWIGCFPVKWHIIKDIPNSLLRHITLANN 356

Query:   372 ENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERIMQQKKAKQHQLQ 431
             ENKPVTNSRDTQEVN E G +I+KIFK + SK CILDD+ FYE R++I++ KK KQ   +
Sbjct:   357 ENKPVTNSRDTQEVNLEHGTKIIKIFKEYMSKTCILDDYKFYETRQKIIRDKKIKQ---K 413

Query:   432 RQVSDGKPSDVI 443
             +Q  DG   + I
Sbjct:   414 KQALDGASGETI 425

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019722 "calcium-mediated signaling" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

TAIR|locus:2089280 ECT5 "AT3G13060" [Arabidopsis thaliana (taxid:3702)]

 Score = 778 (278.9 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
 Identities = 164/300 (54%), Positives = 205/300 (68%)

Query:   131 FGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDS-WISGRGWYPVDSKYKPRGRGYGASG 189
             +G+ S   + N  Y H G   + G  YGS    +  +  +GW  VD+  + RGR    S 
Sbjct:   278 YGFGSGSNSYNRGYMHSGGRGQ-GSNYGSRLISNVGMGNQGWIGVDNS-RGRGRVSDPSL 335

Query:   190 SGKEN--VDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEK 247
              G  N   D LNE N+GPRA   K Q       V    + L S+  + ++N     + E+
Sbjct:   336 GGAYNGTFDILNEQNRGPRASKPKTQ-------VL---EELDSAADSKKNNKGSAKEHEE 385

Query:   248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
              +  DF   Y++AK FIIKSYSED+VHKS+KYN+W STPNGNKKLDAAYREAK++   CP
Sbjct:   386 SNNADFVTDYTNAKLFIIKSYSEDNVHKSIKYNVWASTPNGNKKLDAAYREAKDEKEPCP 445

Query:   308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
             +FLLFSVNAS QF GVAEMVGPVDF+K+V+YWQQDKW G FP+KW IIKDVPNS  RHI 
Sbjct:   446 LFLLFSVNASSQFCGVAEMVGPVDFEKSVDYWQQDKWSGQFPVKWHIIKDVPNSQFRHII 505

Query:   368 LENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERIMQQKKAKQ 427
             LENN+NKPVTNSRDTQEV  E GI++LKIFK++ +   ILDDFGFYE RE+I+Q +KA++
Sbjct:   506 LENNDNKPVTNSRDTQEVKLEQGIEMLKIFKNYDADTSILDDFGFYEEREKIIQDRKARR 565

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2088995 ECT6 "AT3G17330" [Arabidopsis thaliana (taxid:3702)]

 Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
 Identities = 168/408 (41%), Positives = 227/408 (55%)

Query:    32 QRPNYQY-PYLDPNSSHGRGGLSTVVPSPSYQDPGYSFDGIHSPITWLDTSIFGGGQSKH 90
             Q P   Y PY+ P +S G    S V     Y DP Y      SP T++   I    Q   
Sbjct:    52 QSPYNPYNPYI-PGASIGVDS-SFVGFQQYYSDPPYE-SAASSP-TYVPYVI----QPDM 103

Query:    91 NANAGYTSPISHSNNFPS-GRNQNHRPHLANFHHTRPTSDAFG-YMSQMYANNPMYGHYG 148
              +N+   S +++       G  Q +   +A      P S   G Y       N       
Sbjct:   104 VSNSSTDSLVANGGQSDGRGSMQRNGSAIAGLPKDAPKSTTTGQYKQPGIPKNVSTTASA 163

Query:   149 NTFRAGPGYGS--FGYDSWISGRGWYPVDS-KYKPRGRGYGASGSGKENVDG---LNELN 202
             ++ +    Y +    Y       G   + S  YKP  + Y A G    N  G    +E N
Sbjct:   164 HSLQGKTAYANTLLPYGKSDIANGVSSIASYSYKPCSKIYDARGDN--NTTGSTYTSEQN 221

Query:   203 KGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKF 262
             +G R +  +NQ       +  K    K+  +  E N+ + PD+  Y+ EDF   YSDA+F
Sbjct:   222 RGSRTRRSRNQ-------LIVKAYTTKAGNADAEGNIVINPDR--YNKEDFSIEYSDARF 272

Query:   263 FIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAK----EKSSDCPVFLLFSVNASG 318
             F+IKSYSEDDVHKS+KY +W+ST NGNKKL + Y +A+    EKS +CP+FL FSVN+SG
Sbjct:   273 FVIKSYSEDDVHKSIKYGVWSSTLNGNKKLQSVYEDAQRIATEKSRECPIFLFFSVNSSG 332

Query:   319 QFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTN 378
              F GVAEM GPV FD+ +++WQQDKW G FP+KW IIKDVPNS  RHI L NNENKPVTN
Sbjct:   333 LFCGVAEMTGPVSFDRDMDFWQQDKWSGSFPVKWHIIKDVPNSYFRHIILHNNENKPVTN 392

Query:   379 SRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERIMQQKKAK 426
             SRDTQE+  + G+++LK+FK H+ K  +LDDF +YE R+R+MQ+++A+
Sbjct:   393 SRDTQEIILKQGLEVLKLFKHHAEKTSLLDDFMYYEDRQRLMQEERAR 440

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2023807 ECT7 "AT1G48110" [Arabidopsis thaliana (taxid:3702)]

 Score = 677 (243.4 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
 Identities = 129/242 (53%), Positives = 172/242 (71%)

Query:   191 GKENV--DGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKY 248
             G  N+  D + E N+G R++   NQ       +  K    K+  +  E N+ + P +  Y
Sbjct:   259 GHANIIPDTVREQNRGRRSRALGNQ-------LIVKAYTTKAGNADAEGNIVINPSQ--Y 309

Query:   249 SGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAK----EKSS 304
             + ED    YS+AKFF+IKSYSEDDVHKS+KYN+W+ST +GNKKL +AY +A+    EKS 
Sbjct:   310 NKEDLRIDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLHGNKKLQSAYEDAQRIATEKSC 369

Query:   305 DCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLR 364
             +CP+FL FSVNASG F G+AEM GPV FDK +++WQQDKW G FP+KW IIKDVPNS  R
Sbjct:   370 ECPIFLFFSVNASGLFCGMAEMTGPVSFDKDMDFWQQDKWSGSFPVKWHIIKDVPNSYFR 429

Query:   365 HITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERIMQQKK 424
             HI L+NNENKPVTNSRDTQE+  + G+++LKIFK H  +  +LDDF +YE+R+R+MQ ++
Sbjct:   430 HIILQNNENKPVTNSRDTQEIMLKQGLEVLKIFKDHMERTSLLDDFVYYESRQRVMQDER 489

Query:   425 AK 426
              +
Sbjct:   490 TR 491

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010494 ECT9 "AT1G27960" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 7.7e-68, Sum P(2) = 7.7e-68
 Identities = 139/285 (48%), Positives = 184/285 (64%)

Query:   149 NTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRG-YGASGSGK--ENVDGLNELNKGP 205
             N F  GP +G   +D++ S       +  Y    R  + AS S    EN   L  L++  
Sbjct:   216 NDFNMGPAHGGL-HDAFESAANLSYREQAYAQCKRSPFSASSSSPTWENDYNLPPLDEA- 273

Query:   206 RAKGFKNQEGFDPATV---AAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKF 262
             R++ + N     PA +       +  ++S    +  +      +++  ++    + DAKF
Sbjct:   274 RSESY-NDFSHCPAMLDMLTESNRGPRASRLNSKSKMISYDRVDRFCQQELLSQFRDAKF 332

Query:   263 FIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVG 322
             F+IKSYSED+VHKS+K+ +W ST NGNKKLDAAYREAK+K   CPVFLLFSVNAS QF G
Sbjct:   333 FVIKSYSEDNVHKSIKHCVWASTKNGNKKLDAAYREAKKKDVACPVFLLFSVNASSQFCG 392

Query:   323 VAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDT 382
             VAEMVGPVDF+ +VEYWQQD+W G FP++WLI+KDVPNS  RHI +E+N+NKPVTNSRDT
Sbjct:   393 VAEMVGPVDFNTSVEYWQQDRWSGHFPVQWLIVKDVPNSLFRHIIIESNDNKPVTNSRDT 452

Query:   383 QEVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERIMQQKKAKQ 427
             QEV  E GI++L IF S   +  ILDDF FYE R+  +Q +KA+Q
Sbjct:   453 QEVGLEKGIEMLDIFISCEMRSSILDDFNFYEERQIAIQDRKARQ 497

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016571 "histone methylation" evidence=RCA

TAIR|locus:2207405 ECT8 "AT1G79270" [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 139/268 (51%), Positives = 183/268 (68%)

Query:   168 GRGWYPVDSKYKPRG-----RGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVA 222
             GR  YP+D   K  G         A    KEN   +N+L  G       N E  +  ++ 
Sbjct:   234 GRIAYPMDPVKKKSGALNRDETEKAKARTKENGTSMNDLANGQ--DHITNGE-CESCSLD 290

Query:   223 AKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMW 282
             A+G N +S+       +  +  +++Y+   F   Y +A FF+IKSYSEDD+HKS+KYN+W
Sbjct:   291 AEG-NERSN------GVGSVIRRDQYNLPSFQTKYEEAIFFVIKSYSEDDIHKSIKYNVW 343

Query:   283 TSTPNGNKKLDAAYREAKEKSSD----CPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEY 338
             +ST NGNKKLD+AY+E+++K++D    CPVFL FSVNASGQF GVAEM+G VD++K++E+
Sbjct:   344 SSTLNGNKKLDSAYQESQKKAADKSGKCPVFLFFSVNASGQFCGVAEMIGRVDYEKSMEF 403

Query:   339 WQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFK 398
             WQQDKW G FP+KW IIKDVPN  LRHI LENNENKPVTNSRDTQEV    G ++L IFK
Sbjct:   404 WQQDKWTGYFPVKWHIIKDVPNPQLRHIILENNENKPVTNSRDTQEVRLPQGNEVLNIFK 463

Query:   399 SHSSKRCILDDFGFYEARERIMQQKKAK 426
             ++++K  ILDDF FYE RE++M QKK +
Sbjct:   464 NYAAKTSILDDFDFYENREKVMVQKKLR 491

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2161213 ECT10 "evolutionarily conserved C-terminal region 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 143/378 (37%), Positives = 206/378 (54%)

Query:    61 YQDPGYSFDGIHSPITWLDTSI----------FGGGQSKHNANAGYTSPISHSNNFPSGR 110
             YQ PGY F+    P   L+  I          FG   + H   +    P S +   P G+
Sbjct:   117 YQYPGYGFNPY--PSVMLEGQIPVSPAYYPQPFGAPSAMHYLPSDI-DPTSAAYMIPYGQ 173

Query:   111 --NQNHRPHLANFHHTR--PTSDAFGYMSQMYANNPMYGHYGNTFRAGPGYGSF----GY 162
                 N+  +  +   T   P     G +     N      +G+   +    G +     Y
Sbjct:   174 YGGGNYSGNQGDISLTSHIPYPQTMGILGPYDHNASQVALHGSGVASSSSLGGYYHVGSY 233

Query:   163 DSWISGRGWYPVDSKYKPRGRGYGASGSGKENVDGLNEL--NKGPRAKG-FKNQEGFDPA 219
              +  S   +Y VD++ +            + ++   ++L  N+GPRA    K++    P 
Sbjct:   234 QNPSSTPSYYGVDNRVRLTPDIGKRREKDQGSISSTSDLYGNRGPRASSRVKSKNSSKPC 293

Query:   220 TVAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKY 279
             +      +  SS + P  +L        Y+  +F   Y +AKFFI+KS+SED+VH+S+KY
Sbjct:   294 STIGDSAS-DSSTAGPNPSL--------YNHPEFVTDYKNAKFFIVKSFSEDNVHRSIKY 344

Query:   280 NMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYW 339
             N+W STP+GNKKLD AYR+A++    CP+FL FSVNASGQF GV+EMVGPVDF+K   YW
Sbjct:   345 NVWASTPHGNKKLDTAYRDAEKMGGKCPIFLFFSVNASGQFCGVSEMVGPVDFEKDAGYW 404

Query:   340 QQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKS 399
             QQD+W G FP+KW I+KD+PN+   HI L+NN+NKPVT+SRD+QEV    GI++L+IFK 
Sbjct:   405 QQDRWSGQFPVKWHIVKDIPNNRFCHILLQNNDNKPVTHSRDSQEVKLRQGIEMLRIFKE 464

Query:   400 HSSKRCILDDFGFYEARE 417
             + +   ILDDFG+Y+  E
Sbjct:   465 YEAHTSILDDFGYYDELE 482

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2024286 ECT11 "AT1G09810" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 138/341 (40%), Positives = 197/341 (57%)

Query:   101 SHSNNFPSG--RNQNHRPHLAN--FHHTRPTSDAFGYMSQMYANNPMYGHYGNTFRAGPG 156
             +H+ +F  G  R++N     A+      RP        +   A  P+ G++    R  P 
Sbjct:    61 AHTTDFRKGNHRDKNSSDVYADSTLRGDRPKGSNCLSQTSFSAPKPL-GNFNGAGRLPPN 119

Query:   157 YGSFGYDSWISGR---GWYPVDSKYKPRGRGYGASGSGKENVDGL---NELNKGPRAKGF 210
               +  +     G+   G +   S  K     Y    +G  N +G     + NK P   G 
Sbjct:   120 TQAHAFRPPFKGKEAAGQFLTFSNQKTSCVPYSGYINGNSN-NGFWDQRDHNKKPERNGE 178

Query:   211 KNQEGFDPATVAAKGQNLKSSESTP---EDNLPLIPDKEKYSGEDFPESYSDAKFFIIKS 267
              +          A  +    SES+P    ++  L   +E Y+  DF   Y DAKFF+IKS
Sbjct:   179 SDYLVELKCGPRANAKTRPPSESSPLKQNNSFALALRREMYNLPDFQTDYEDAKFFVIKS 238

Query:   268 YSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDC----PVFLLFSVNASGQFVGV 323
             YSEDDVHKS+KY++W+ST NGNKKLDAA+R+A+ K+ +     P+FL FSVNAS QFVG+
Sbjct:   239 YSEDDVHKSIKYSVWSSTINGNKKLDAAFRDAETKTLEDGKKRPIFLFFSVNASRQFVGL 298

Query:   324 AEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQ 383
             AEMVG VDF+K +++WQ DKW G FP++W ++KD+PN  LRHI L+NNE+KPVT++RDT 
Sbjct:   299 AEMVGYVDFNKDLDFWQVDKWSGFFPVEWHVVKDIPNWELRHIILDNNEDKPVTHTRDTH 358

Query:   384 EVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERIMQQKK 424
             E+  + G+Q+L IFK +S+   +LDD  FYE RE+ ++ KK
Sbjct:   359 EIKLKEGLQMLSIFKKYSAVTFLLDDMDFYEEREKSLRAKK 399

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	517
pfam04146	135	pfam04146, YTH, YT521-B-like domain	3e-68

>gnl|CDD|217926 pfam04146, YTH, YT521-B-like domain

 Score =  215 bits (549), Expect = 3e-68
 Identities = 75/141 (53%), Positives = 99/141 (70%), Gaps = 8/141 (5%)

Query: 261 KFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQF 320
           +FFIIKSY+ED+VH S+KY +W ST + NKKL+ A++EA+      PV+L+FSVN SG+F
Sbjct: 1   RFFIIKSYNEDNVHLSIKYGVWASTSHNNKKLNKAFKEAE------PVYLIFSVNKSGKF 54

Query: 321 VGVAEMVGPVDFDKTV--EYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTN 378
            G A M  P+DFD T   +     KW G F ++WL +KD+P   LRH+   NNENKPVT 
Sbjct: 55  CGYARMTSPIDFDSTANSQDSSSQKWGGPFKVEWLSVKDLPFHRLRHLKNPNNENKPVTI 114

Query: 379 SRDTQEVNFEIGIQILKIFKS 399
           SRD QE+  EIG ++LKIFK+
Sbjct: 115 SRDGQEIEPEIGEELLKIFKN 135

A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	517
KOG1901	487	consensus Uncharacterized high-glucose-regulated p	100.0
PF04146	140	YTH: YT521-B-like domain; InterPro: IPR007275 A pr	100.0
KOG1902	441	consensus Putative signal transduction protein inv	100.0
PRK00809	144	hypothetical protein; Provisional	94.06

>KOG1901 consensus Uncharacterized high-glucose-regulated protein [General function prediction only]

Probab=100.00  E-value=6.3e-80  Score=645.33  Aligned_cols=292  Identities=57%  Similarity=0.919  Sum_probs=260.1

Q ss_pred             CCCCcCCcccCCcCcccCCCcccCCCCCCCCCCCCCCCCCccccCCCcccCCCCCCCCCCCCC-CCcccccccCCCCCCC
Q 010141          130 AFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGYGASGSGK-ENVDGLNELNKGPRAK  208 (517)
Q Consensus       130 ~~~~~~~~y~~~~~y~~~g~~~~~~~~~gs~~~~~~~~~~~w~~~~~k~~~r~~~~~~~~~~~-~~~d~~~e~nrgpra~  208 (517)
                      ..+|.+.++....+|+.+..+...+..|+...|.....+|+|..+++..+..+... .....+ ...+.++|+|||||+.
T Consensus       176 ~~~~~~~~~~~~~~~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~nrg~~s~  254 (487)
T KOG1901|consen  176 AQGYYDQFSSQPGLYGSYQPTGGSGPPYGQSLYANQPKGRSPYGVDNSRPTWGINY-PRLPSDEAGSDSLNEQNRGPRSS  254 (487)
T ss_pred             ccccccccccCcccccCccccCCCCCccCcccccccccCCCCcccCCCcccccccC-CCccccccccccccccccCcccc
Confidence            67888999998889999988888899999999999999999999986444333322 222333 3378999999999999


Q ss_pred             CCCCCCCCCCchhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEEecCChhhHHHHHhcCeeecCCch
Q 010141          209 GFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNG  288 (517)
Q Consensus       209 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qyN~~df~~~~~~ARFFVIKS~nEdNIhkSIKygVWaSTp~n  288 (517)
                      .++++.........+...       +.......++++++||+++|.+.+.+|||||||||+|||||+||||+|||+|+++
T Consensus       255 ~~~~~~~~~~~~~~~~~~-------s~~~~~~~~~~~~~yn~~~f~~~~~nAkfFVIKSySEDdVHkSIKY~vWsST~~G  327 (487)
T KOG1901|consen  255 DSRGQDINSSGPTEAGSA-------SAPESNESVKRRDRYNPPDFLTDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNG  327 (487)
T ss_pred             cccCccccCCcchhcccc-------ccccccccccChhhcCccccccccccceEEEEeccChhhhhhhcccceeecccCC
Confidence            998887655533332221       1212235788999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCCEEEEEEecCCCCeeeeEEeeCCCCCCCCcccccccccccccceeEEEeecCCCCccccccc
Q 010141          289 NKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITL  368 (517)
Q Consensus       289 nkKLd~AFreA~ek~~~~pVyLfFSVN~SG~FqG~AeM~SpVDf~k~~~~WqqdKw~G~F~VkWl~VkDVPf~~lrHI~N  368 (517)
                      |||||+||++++.+.++||||||||||+||||||||||++||||+++++||+||||.|.|+|+||+||||||..|+||++
T Consensus       328 NKkLdaAYreak~~~~~cPvfLfFSVNaSGqFCGvAEMvgPVdfn~~~~~WqQDKW~G~FpVKWhiVKDVPNs~lrHI~L  407 (487)
T KOG1901|consen  328 NKKLDAAYREAKKKSGKCPVFLFFSVNASGQFCGVAEMVGPVDFNKDMEYWQQDKWSGSFPVKWHIVKDVPNSQLRHIIL  407 (487)
T ss_pred             chhhHHHHHHhhhccCCCCceEEEEEcCCccccceeeeccceecccccchhhhcccceecceeeEEEeeCCccceeEEEe
Confidence            99999999999988899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeecCCCceechHHHHHHHHHhhhCCCCCccccchHhHHHHHHHHHHHHHHhhh
Q 010141          369 ENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERIMQQKKAKQHQ  429 (517)
Q Consensus       369 ~~NENKPVt~SRDGQEIe~e~G~qLLkIF~~~~s~tSIlDDF~~Ye~rek~~~~~r~~~~~  429 (517)
                      ++|||||||++||+|||.+++|++||+||+.|.++|||||||.|||.||+.|+++|+|+..
T Consensus       408 eNNeNKPVTnSRDTQEV~leqGievlkIfk~y~~~TSiLDDf~~Ye~rq~~~~~~k~r~~~  468 (487)
T KOG1901|consen  408 ENNENKPVTNSRDTQEVPLEQGIEVLKIFKSYAAKTSILDDFGFYEERQKIIQDKKARQPP  468 (487)
T ss_pred             ecCCCCCcccccccceecHHHHHHHHHHHHhhcceeeecccccchHHHHHHhhhcccccCc
Confidence            9999999999999999999999999999999999999999999999999999999998864

>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []

Probab=100.00  E-value=3.2e-50  Score=362.81  Aligned_cols=136  Identities=50%  Similarity=0.912  Sum_probs=114.4

Q ss_pred             CceEEEEecCChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEecCCCCeeeeEEeeCCCCCCCCccc
Q 010141          259 DAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEY  338 (517)
Q Consensus       259 ~ARFFVIKS~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN~SG~FqG~AeM~SpVDf~k~~~~  338 (517)
                      ++|||||||++++||++|++||||+|+++++++|++||+++      ++||||||||+||+|||||+|+|+++++....+
T Consensus         1 ~~rfFiiKS~~~~ni~~s~~~gvW~t~~~~~~~L~~Af~~~------~~V~L~FSvn~S~~F~G~A~M~s~~~~~~~~~~   74 (140)
T PF04146_consen    1 NARFFIIKSFNEENIHLSIKYGVWATQPKNEKKLNEAFKES------RNVYLFFSVNGSGHFQGYARMTSPIDPDSPKPF   74 (140)
T ss_dssp             --EEEEEEESSCHHHHHHHHCTEEE--CCCHHHHHHHHHHS------S-EEEEEEETTTSEEEEEEEEECECCSSS----
T ss_pred             CcEEEEEEECCHHHHHHHHhCCEEcccccchHHHHHHHHhC------CCEEEEEeecCcceEEEEEEEccCCCCcccCcc
Confidence            57999999999999999999999999999999999999998      589999999999999999999999999999999


Q ss_pred             cc----ccccccccceeEEEeecCCCCcccccccCCCCCCceeecCCCceechHHHHHHHHHhhhC
Q 010141          339 WQ----QDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSH  400 (517)
Q Consensus       339 Wq----qdKw~G~F~VkWl~VkDVPf~~lrHI~N~~NENKPVt~SRDGQEIe~e~G~qLLkIF~~~  400 (517)
                      |.    ..+|.|.|+|+||++++|||+.++||+|++||||||+++||||||++++|++||+||+++
T Consensus        75 w~~~~~~~~~~g~F~v~Wl~~~~lpf~~~~hl~n~~n~~~pV~~~rDgqEi~~~~G~~l~~~f~~~  140 (140)
T PF04146_consen   75 WQQDSSSSKWGGPFRVEWLRVKDLPFSKLRHLRNPLNENKPVKISRDGQEIEPEIGEQLLKIFDNQ  140 (140)
T ss_dssp             --SS-SGCGG-SEEEEEEEE-S-EEHHHHTT-EETTTTTEETTS--TTEEE-CCHHHHHHHHCGT-
T ss_pred             ccccccccccCCceEEEEEECCcCChHHhcccccccCCCcEEEECCCCEEeCHHHHHHHHHHHhhC
Confidence            95    369999999999999999999999999999999999999999999999999999999863

It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.

>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]

Probab=100.00  E-value=9.3e-43  Score=352.07  Aligned_cols=149  Identities=36%  Similarity=0.599  Sum_probs=138.4

Q ss_pred             CCCCCCCCCCCCCCceEEEEecCChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEecCCCCeeeeEE
Q 010141          246 EKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAE  325 (517)
Q Consensus       246 ~qyN~~df~~~~~~ARFFVIKS~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN~SG~FqG~Ae  325 (517)
                      +++++...+.  ..+|||||||.|.+||.+|++.|||+|++.|++||+.||+++      ..||||||||.||||||||+
T Consensus        60 ~~~~~ss~~~--~~~rYFIiKS~N~eN~elSvqkGiWaTq~sNE~kLn~AF~~s------~~ViLIFSVn~SghFQG~Ar  131 (441)
T KOG1902|consen   60 DQTSKLKYVL--QDARYFIIKSNNHENVELSVQKGVWSTQPSNEKKLNLAFRSS------RSVILIFSVNESGHFQGFAR  131 (441)
T ss_pred             hhcccccccC--CceEEEEEecCCccceeeehhcceeccccccHHHHHHHHhhc------CcEEEEEEecccccchhhhh
Confidence            5555555444  588999999999999999999999999999999999999998      68999999999999999999


Q ss_pred             eeCCCCCCCCcccccc-----cccccccceeEEEeecCCCCcccccccCCCCCCceeecCCCceechHHHHHHHHHhhhC
Q 010141          326 MVGPVDFDKTVEYWQQ-----DKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSH  400 (517)
Q Consensus       326 M~SpVDf~k~~~~Wqq-----dKw~G~F~VkWl~VkDVPf~~lrHI~N~~NENKPVt~SRDGQEIe~e~G~qLLkIF~~~  400 (517)
                      |+|+|...++-..|.+     ..|++.|+||||++++|||.++.||+|||||||||++|||||||++++|+|||.|+...
T Consensus       132 MsS~IG~~~~q~~W~~~~G~~a~~G~~FkVkWiRl~eLpFqkt~hL~NP~NdnkpVKISRD~QELep~VGEqL~~Ll~~~  211 (441)
T KOG1902|consen  132 MSSEIGHGGSQIHWVLPAGMSAMLGGVFKVKWIRLRELPFQKTAHLTNPWNENKPVKISRDGQELEPEVGEQLCLLLPPD  211 (441)
T ss_pred             hcchhccCCCCccccccCCcccccCceeeEeEEeeccccchhhhhcCCcccccCceeecccccccChhHHHHHHHhcCCC
Confidence            9999998888877875     67999999999999999999999999999999999999999999999999999999876


Q ss_pred             CC
Q 010141          401 SS  402 (517)
Q Consensus       401 ~s  402 (517)
                      +.
T Consensus       212 p~  213 (441)
T KOG1902|consen  212 PS  213 (441)
T ss_pred             cc
Confidence            65

>PRK00809 hypothetical protein; Provisional

Probab=94.06  E-value=0.28  Score=45.77  Aligned_cols=122  Identities=15%  Similarity=0.158  Sum_probs=73.6

Q ss_pred             eEEEEecCChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEec------CCCCeeeeEEeeCCCCCCC
Q 010141          261 KFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN------ASGQFVGVAEMVGPVDFDK  334 (517)
Q Consensus       261 RFFVIKS~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN------~SG~FqG~AeM~SpVDf~k  334 (517)
                      +|+|+=+ |+||+......|||-.....-     +|-...   .....+||++-+      .-..|.|+|++++..-.+.
T Consensus         2 ~yWi~~~-~~~~~~~~~~~gv~g~~~~~r-----n~lr~M---k~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~y~D~   72 (144)
T PRK00809          2 TYWLCIT-NEDNWEVIKDKNVWGVPERYK-----NTIEKV---KPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEWYEDS   72 (144)
T ss_pred             ceEEEec-CHHHHHHHHhCCEeecchhhh-----hHHhhC---CCCCEEEEEECCccCCCCCCceEEEEEEEecCcccCC
Confidence            6777766 899999999999999964322     222221   124677788877      4789999999998752222


Q ss_pred             Cccccc------ccccccccceeEEEeec--CCCCcc----cccccCCCCCCce-eecCCCceechHHHHHHH
Q 010141          335 TVEYWQ------QDKWVGCFPLKWLIIKD--VPNSSL----RHITLENNENKPV-TNSRDTQEVNFEIGIQIL  394 (517)
Q Consensus       335 ~~~~Wq------qdKw~G~F~VkWl~VkD--VPf~~l----rHI~N~~NENKPV-t~SRDGQEIe~e~G~qLL  394 (517)
                       ..+|.      .+.+--..+|+++...+  ||...|    .-|++.-.=...+ ..++  .||..+.-..|+
T Consensus        73 -t~~~p~~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L~~~L~fik~~~~w~~~l~R~~~--~~I~~~d~~~I~  142 (144)
T PRK00809         73 -TPIFPAEPVRPKEIYPYRVKLKPVKIFEEPIDFKPLIPKLKFIENKKQWSGHLRNRAM--RPIPEEDYKLIE  142 (144)
T ss_pred             -ccCCCccccCCCCCceEEEEEEEeeecCCcccHHHHHhhhhhhhcccccchhhhcCCC--ccCCHHHHHHHh
Confidence             12332      12222467899988877  776555    1112211101222 4555  777766655444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	517
2yud_A	180	Solution Structure Of The Yth Domain In Yth Domain-		3e-15
2yu6_A	141	Solution Structure Of The Yth Domain In Yth Domain-		5e-13

>pdb|2YUD|A Chain A, Solution Structure Of The Yth Domain In Yth Domain- Containing Protein 1 (Putative Splicing Factor Yt521) Length = 180

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 259 DAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASG 318
           DA+FF+IKS + ++V  +    +W++ P   KKL+ A+R A+       V L+FSV  SG
Sbjct: 25  DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRESG 78
Query: 319 QFVGVAEMVGPVDFDKTVEYW-----QQDKWVG-CFPLKWLIIKDVPNSSLRHITLENNE 372
           +F G A +        +  +W        K +G  F + W+  +++P +   H+T   NE
Sbjct: 79  KFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 138
Query: 373 NKPVTNSRDTQEVNFEIGIQILKIF 397
           +KPV   RD QE+  E G Q+  +F
Sbjct: 139 HKPVKIGRDGQEIELECGTQLCLLF 163

>pdb|2YU6|A Chain A, Solution Structure Of The Yth Domain In Yth Domain- Containing Protein 2 Length = 141

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 79/141 (56%), Gaps = 7/141 (4%)
Query: 258 SDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNAS 317
           S  ++FI+KS +  ++  S +  +W++TP+  +KL+ A+ E+        V+L+FSV  S
Sbjct: 6   SGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWES------SIVYLVFSVQGS 59
Query: 318 GQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVT 377
           G F G + M   +  +K+ + W      G F ++W+  + +P     H+    N+NK V 
Sbjct: 60  GHFQGFSRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQ 118
Query: 378 NSRDTQEVNFEIGIQILKIFK 398
            SRD QE+  ++G Q+L++++
Sbjct: 119 ISRDGQELEPQVGEQLLQLWE 139

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	517
2yu6_A	141	YTH domain-containing protein 2; structural genomi	2e-62
2yud_A	180	YTH domain-containing protein 1; structure genomic	4e-59
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 141

 Score =  199 bits (508), Expect = 2e-62
 Identities = 42/143 (29%), Positives = 78/143 (54%), Gaps = 7/143 (4%)

Query: 256 SYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN 315
             S  ++FI+KS +  ++  S +  +W++TP+  +KL+ A+ E+        V+L+FSV 
Sbjct: 4   GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS------IVYLVFSVQ 57

Query: 316 ASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKP 375
            SG F G + M   +  +K+   W      G F ++W+  + +P     H+    N+NK 
Sbjct: 58  GSGHFQGFSRMSSEIGREKSQ-DWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKK 116

Query: 376 VTNSRDTQEVNFEIGIQILKIFK 398
           V  SRD QE+  ++G Q+L++++
Sbjct: 117 VQISRDGQELEPQVGEQLLQLWE 139

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 180

 Score =  192 bits (489), Expect = 4e-59
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 12/167 (7%)

Query: 242 IPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKE 301
           +    K           DA+FF+IKS + ++V  +    +W++ P   KKL+ A+R A+ 
Sbjct: 8   VRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSAR- 66

Query: 302 KSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQ------QDKWVGCFPLKWLII 355
                 V L+FSV  SG+F G A +        +  +W            G F + W+  
Sbjct: 67  -----SVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICR 121

Query: 356 KDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSS 402
           +++P +   H+T   NE+KPV   RD QE+  E G Q+  +F    S
Sbjct: 122 RELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDES 168

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 5e-06
 Identities = 59/400 (14%), Positives = 104/400 (26%), Gaps = 138/400 (34%)

Query: 185 YGASGSGKENVDGLNELNKGPRAKGFKNQ-------EGFDPATVAAKGQNLKSSESTPED 237
            G  GSGK     L+             +           P TV    Q L         
Sbjct: 156 DGVLGSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 238 NLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSE-----DDV------------------- 273
           +        K                  K Y        +V                   
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRR--LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 274 ---------------HKSVKYNMWTSTPNGNKKLDAAY---------REAKEKSSDCPVF 309
                          H S+ ++  T TP+  K L   Y         RE    +   P  
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---P-- 327

Query: 310 LLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLE 369
              S+        +AE +   D   T + W+    V C  L   II+    SSL    LE
Sbjct: 328 RRLSI--------IAESI--RDGLATWDNWKH---VNCDKLT-TIIE----SSLNV--LE 367

Query: 370 NNENKPVTNS----RDTQEVNFEIGIQILKIFKSHSSKRC---ILDDFGFYEARERIMQQ 422
             E + + +           +  I   +L +      K     +++        +  + +
Sbjct: 368 PAEYRKMFDRLSVFPP--SAH--IPTILLSLIWFDVIKSDVMVVVNKL-----HKYSLVE 418

Query: 423 KKAKQ-----HQLQ---RQVSDGKPS--DVIID--------DKDKDAASAKD-------- 456
           K+ K+       +    +   + + +    I+D        D D       D        
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 457 ----RVQKSQEETLVKELAL----IETIGDVKKLEENGSA 488
                ++  +  TL + + L    +E     +K+  + +A
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLE-----QKIRHDSTA 513

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	517
2yud_A	180	YTH domain-containing protein 1; structure genomic	100.0
2yu6_A	141	YTH domain-containing protein 2; structural genomi	100.0
2hd9_A	145	UPF0310 protein PH1033; pyrococcus horikoshii OT3,	96.02
2p5d_A	147	UPF0310 protein mjecl36; NPPSFA, national project	94.72

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=3.2e-56  Score=417.67  Aligned_cols=166  Identities=30%  Similarity=0.525  Sum_probs=156.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCceEEEEecCChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEecCCCC
Q 010141          240 PLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQ  319 (517)
Q Consensus       240 ~~~~~~~qyN~~df~~~~~~ARFFVIKS~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN~SG~  319 (517)
                      ...++++|||+.+++.  +++|||||||++++|||+|++||||+||++||++|++||+++      .+||||||||+||+
T Consensus         8 ~~~~~~~~~~~~~~~~--~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~------~~V~L~FSVn~Sg~   79 (180)
T 2yud_A            8 VRAVRKDQTSKLKYVL--QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSA------RSVILIFSVRESGK   79 (180)
T ss_dssp             CCCCCCCSSHHHHHHT--TTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHS------SCEEEEEEETTTSE
T ss_pred             hhhcchhhcccccccc--CceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhC------CeEEEEEEeCCCCc
Confidence            4456889999988774  799999999999999999999999999999999999999998      58999999999999


Q ss_pred             eeeeEEeeCCCCCCCCccccc------ccccccccceeEEEeecCCCCcccccccCCCCCCceeecCCCceechHHHHHH
Q 010141          320 FVGVAEMVGPVDFDKTVEYWQ------QDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQI  393 (517)
Q Consensus       320 FqG~AeM~SpVDf~k~~~~Wq------qdKw~G~F~VkWl~VkDVPf~~lrHI~N~~NENKPVt~SRDGQEIe~e~G~qL  393 (517)
                      |||||+|+|+++++....+|+      +++|+|.|+|+||+++||||..++||+|+|||||||+++||||||++++|++|
T Consensus        80 F~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~L  159 (180)
T 2yud_A           80 FQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL  159 (180)
T ss_dssp             EEEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHHH
T ss_pred             EEEEEEEccCCCCCCCCccccccCccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHHHHHH
Confidence            999999999999998888997      46799999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCCCccccchHhHHHHHHHH
Q 010141          394 LKIFKSHSSKRCILDDFGFYEARERIM  420 (517)
Q Consensus       394 LkIF~~~~s~tSIlDDF~~Ye~rek~~  420 (517)
                      |+||+.+       ++|++|+.|+|..
T Consensus       160 ~~lf~~~-------~~~~~~~~~~~~~  179 (180)
T 2yud_A          160 CLLFPPD-------ESIDLYQVIHKMR  179 (180)
T ss_dssp             HHHSCCC-------SSSCSHHHHHHHH
T ss_pred             HHhcccC-------cCccHHHHHHhhc
Confidence            9999886       5899999999864

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=3.6e-54  Score=389.88  Aligned_cols=138  Identities=30%  Similarity=0.552  Sum_probs=132.9

Q ss_pred             CCCCceEEEEecCChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEecCCCCeeeeEEeeCCCCCCCC
Q 010141          256 SYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKT  335 (517)
Q Consensus       256 ~~~~ARFFVIKS~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN~SG~FqG~AeM~SpVDf~k~  335 (517)
                      ...++|||||||+++||||+|++||||+||++||++|++||+++      .+||||||||+||+|||||+|+|++|+ ..
T Consensus         4 ~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~------~~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~   76 (141)
T 2yu6_A            4 GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWES------SIVYLVFSVQGSGHFQGFSRMSSEIGR-EK   76 (141)
T ss_dssp             CCCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHS------SCEEEEEEESSSSEECEEEEECSCSSS-CC
T ss_pred             CCCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcC------CcEEEEEEECCCCeEEEEEEEcccCCC-CC
Confidence            35789999999999999999999999999999999999999998      599999999999999999999999999 66


Q ss_pred             cccccccccccccceeEEEeecCCCCcccccccCCCCCCceeecCCCceechHHHHHHHHHhhhC
Q 010141          336 VEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSH  400 (517)
Q Consensus       336 ~~~WqqdKw~G~F~VkWl~VkDVPf~~lrHI~N~~NENKPVt~SRDGQEIe~e~G~qLLkIF~~~  400 (517)
                      ..+|++++|+|.|+|+||+++||||..++||+|++||||||+++||||||++++|++||+||+++
T Consensus        77 ~~~W~~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~~  141 (141)
T 2yu6_A           77 SQDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERL  141 (141)
T ss_dssp             CCCCSCSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGTC
T ss_pred             CccccccccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhhC
Confidence            67899999999999999999999999999999999999999999999999999999999999864

>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A

Probab=96.02  E-value=0.019  Score=51.84  Aligned_cols=125  Identities=14%  Similarity=0.196  Sum_probs=80.2

Q ss_pred             eEEEEecCChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEecCC--------CCeeeeEEeeCCCCC
Q 010141          261 KFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNAS--------GQFVGVAEMVGPVDF  332 (517)
Q Consensus       261 RFFVIKS~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN~S--------G~FqG~AeM~SpVDf  332 (517)
                      +|.|+|| +.|++....+.|+|-. .+.-+.    |-...   .....+|||+-+..        ..|.|++++++..-.
T Consensus         2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn----~lr~m---k~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~   72 (145)
T 2hd9_A            2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKN----TLSRV---KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV   72 (145)
T ss_dssp             CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHH----HHTTC---CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred             ceEEEeC-CHHHHHHHHHcCcccc-CHHHHH----HHHhC---CCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEe
Confidence            6999999 8999999999999977 554332    22221   12457777876655        799999999986532


Q ss_pred             CCCccccc-----ccccccccceeEEEeecCCCCcccccccCCCCC-----CceeecCCCceechHHHHHHHHHh
Q 010141          333 DKTVEYWQ-----QDKWVGCFPLKWLIIKDVPNSSLRHITLENNEN-----KPVTNSRDTQEVNFEIGIQILKIF  397 (517)
Q Consensus       333 ~k~~~~Wq-----qdKw~G~F~VkWl~VkDVPf~~lrHI~N~~NEN-----KPVt~SRDGQEIe~e~G~qLLkIF  397 (517)
                      +.+ .+|-     .+..--...|+++.+..||+..+.. .+.+=.|     .++ .-+--++|+.+....||+.+
T Consensus        73 D~t-~~~~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~-~l~fi~~k~~w~~~l-~r~gv~pV~~~d~~~I~~~m  144 (145)
T 2hd9_A           73 DFS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKPLIN-DLKFIKNKKRWSMHF-FGKAMRELPEEDYKLIEKLL  144 (145)
T ss_dssp             CCC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGG-GCTTCCCSTTGGGGT-TTCSEEEECHHHHHHHHHHC
T ss_pred             CCC-ccCCCcccccCCeeEEEeCEEEeeccCcHHHHHh-hhhhhccccccccee-cccCceEcCHHHHHHHHHhh
Confidence            221 1222     2211124568888889998877664 3332222     122 02337999999999998754

>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}

Probab=94.72  E-value=0.029  Score=50.71  Aligned_cols=126  Identities=16%  Similarity=0.153  Sum_probs=76.2

Q ss_pred             ceEEEEecCChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEec------CCCCeeeeEEeeCCCCCC
Q 010141          260 AKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN------ASGQFVGVAEMVGPVDFD  333 (517)
Q Consensus       260 ARFFVIKS~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN------~SG~FqG~AeM~SpVDf~  333 (517)
                      .+|.|+|+. ++++...++.|+|-. .+.-+.    |-...  .- ....|||...      .-..|.|++++++..-.+
T Consensus         4 m~YWL~~se-~~~~~~~~~~g~wGV-n~~arn----~lr~M--k~-GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D   74 (147)
T 2p5d_A            4 MAYWLCITN-EDNWKVIKEKKIWGV-AERYKN----TINKV--KV-GDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKD   74 (147)
T ss_dssp             CCEEEEEEC-HHHHHHHHHHCEEEE-CGGGHH----HHTTC--CT-TCEEEEEECCBCSTTCBCCEEEEEEEECSCCEEC
T ss_pred             ccceeeecC-HHHHHHHHHcCeeec-CHHHHH----HHHhC--CC-CCEEEEEEecccCCCCCCCEEEEEEEEecccccC
Confidence            479999987 777999999999966 443322    22221  12 3455666332      345899999999854222


Q ss_pred             -----CCcccccccccccccceeEEEe--ecCCCCccc----ccccCCC-CCCceeecCCCceechHHHHHHHHH
Q 010141          334 -----KTVEYWQQDKWVGCFPLKWLII--KDVPNSSLR----HITLENN-ENKPVTNSRDTQEVNFEIGIQILKI  396 (517)
Q Consensus       334 -----k~~~~WqqdKw~G~F~VkWl~V--kDVPf~~lr----HI~N~~N-ENKPVt~SRDGQEIe~e~G~qLLkI  396 (517)
                           ....|...+..--..+|+++..  ..||+..|+    +|.+.-. .+.-|..+  -++|..+.-..||+|
T Consensus        75 ~t~~dp~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~~L~r~g--v~pV~~~~~~~I~~~  147 (147)
T 2p5d_A           75 SSKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSGHLMGKA--MREIPEEDYKLIVGN  147 (147)
T ss_dssp             CCCCSCCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC--CCCS--EEEECHHHHHHHHTC
T ss_pred             CcccCcCccCcCCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHHHHhcCC--ceECCHHHHHHHHhC
Confidence                 2222111221223788999987  888877766    2222211 22224555  899999988888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	517
d2hd9a1	145	Hypothetical protein PH1033 {Pyrococcus horikoshii	93.51

>d2hd9a1 b.122.1.8 (A:1-145) Hypothetical protein PH1033 {Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein PH1033
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.51  E-value=0.077  Score=45.68  Aligned_cols=122  Identities=13%  Similarity=0.156  Sum_probs=75.0

Q ss_pred             EEEEecCChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEecCC--------CCeeeeEEeeCCCCCC
Q 010141          262 FFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNAS--------GQFVGVAEMVGPVDFD  333 (517)
Q Consensus       262 FFVIKS~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN~S--------G~FqG~AeM~SpVDf~  333 (517)
                      |+|+=+ ++||+...++.|+|.........|...        ....-+|||+....        +.|.|+++.++....+
T Consensus         3 YWi~v~-s~e~~~~~~~~g~~~~~~~k~~~~~ri--------kpGD~li~Y~~~~~~~~~~~~~q~f~ai~~V~~~~~~d   73 (145)
T d2hd9a1           3 YWICIT-NRENWEVIKRHNVWGVPKKHKNTLSRV--------KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVD   73 (145)
T ss_dssp             EEEEEE-CHHHHHHHHHHCEEEECGGGHHHHTTC--------CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEEC
T ss_pred             eEEEeC-CHHHHHHHHhCCEEeccCCchhhHhhC--------CCCCEEEEEeCccccCCCcccccEEEEEEEEeccceec
Confidence            565544 799999999999999865433322211        22467778885433        4799999999876443


Q ss_pred             CCccccccccccc-----ccceeEEEeecCCCCcccccccCCC--CCCc---eeecCC-CceechHHHHHHHHH
Q 010141          334 KTVEYWQQDKWVG-----CFPLKWLIIKDVPNSSLRHITLENN--ENKP---VTNSRD-TQEVNFEIGIQILKI  396 (517)
Q Consensus       334 k~~~~WqqdKw~G-----~F~VkWl~VkDVPf~~lrHI~N~~N--ENKP---Vt~SRD-GQEIe~e~G~qLLkI  396 (517)
                      . ...|...+..+     .++|+|+.+.+||+..   |...|+  .|+.   ...-|- -.||+.+-...|-++
T Consensus        74 ~-t~i~~~~~~~~~~~P~R~~v~~~~~~ev~i~~---l~~~L~fi~~k~~W~~y~~r~g~~~I~~~D~~lI~~~  143 (145)
T d2hd9a1          74 F-SRIFKPHRGGKETYPYRVKIKPIKIGEINFKP---LINDLKFIKNKKRWSMHFFGKAMRELPEEDYKLIEKL  143 (145)
T ss_dssp             C-CCCSCCTTSSCCCCCEEEEEEEEEEEEEESGG---GGGGCTTCCCSTTGGGGTTTCSEEEECHHHHHHHHHH
T ss_pred             c-cccccccccCCceEEEEEEeEEeecccccHHH---HHhHHHhhcCchhhhHHHhcCCceecCHHHHHHHHHH
Confidence            3 34565433322     4779999999999754   332221  2321   233343 346777666655543