Citrus Sinensis ID: 010159

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510------
MAEEFGSPACKKSPPIFIFFKDIRHALKLDELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAREAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVSGAAIAHVISQYLIAIILLWKLIQQVDLIPPSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGFWRIGTGTGPWAFLRR
ccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
cccHcccccccccccEEEEEcccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHcccccccHHHHHHcccccccccHcHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEHHHHHHHHHHHHHHHHHHccccccHHHcc
maeefgspackksppifIFFKDIRHALKLDELGLEIAQIALpaslaltadpiaslidtafigQIGSVELAAVGVSIALFNQVSRIAIFPLVsvttsfvaeEDAIKSVAREaeesdsieegsangnsedreliprsdsteadceskpltsscnvvkpkyehqrryipsassAMVIGSILGLIQAIVLIAGAVpllnfmgigsespmlspaqKYLTLRSLGAPAVLLSLAMQGvfrgfkdtktplyatvagdltniildPIFIFVFRLGVSGAAIAHVISQYLIAIILLWKLIQqvdlippsmkrlkfgRFLQNGFLLLIRVMAVTFCVTLSASlaarqgptSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIgipfvastqpinslafvfdginfgasdYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGfwrigtgtgpwaflrr
maeefgspackksppiFIFFKDIRHALKLDELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVareaeesdsieegsangnsedreliprsdsteadceskpltsscnvvkpkyeHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVSGAAIAHVISQYLIAIILLWKLIQQVDLIPPSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGFWRIgtgtgpwaflrr
MAEEFGSPACKKSPPIFIFFKDIRHALKLDELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAREAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVSGAAIAHVISQYLIAIILLWKLIQQVDLIPPSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSaarvlqlglvlglvlgailgvalQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGFWRIGTGTGPWAFLRR
**************PIFIFFKDIRHALKLDELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAE*********************************************************YEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVSGAAIAHVISQYLIAIILLWKLIQQVDLIPPSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGFWRIGTGTGPWAFL**
******************************ELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVARE************NGNSEDRELIPRSDSTEADCESKPLTSSCNVV*PKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVSGAAIAHVISQYLIAIILLWKLIQQVDLIPPSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGFWRIGTGTGPWAFLR*
*********CKKSPPIFIFFKDIRHALKLDELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKS******************************************SSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVSGAAIAHVISQYLIAIILLWKLIQQVDLIPPSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGFWRIGTGTGPWAFLRR
*****GSPACKKSPPIFIFFKDIRHALKLDELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAREAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVSGAAIAHVISQYLIAIILLWKLIQQVDLIPPSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGFWRIGTGTGPWAFLRR
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAEEFGSPACKKSPPIFIFFKDIRHALKLDELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAREAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVSGAAIAHVISQYLIAIILLWKLIQQVDLIPPSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGFWRIGTGTGPWAFLRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query516 2.2.26 [Sep-21-2011]
Q9SYD6515 MATE efflux family protei yes no 0.994 0.996 0.699 0.0
Q9SFB0526 MATE efflux family protei no no 0.959 0.941 0.583 1e-161
Q84K71521 MATE efflux family protei no no 0.870 0.861 0.449 1e-108
Q9SVE7560 MATE efflux family protei no no 0.864 0.796 0.430 1e-105
P28303459 DNA-damage-inducible prot N/A no 0.604 0.679 0.246 3e-12
Q8W4G3559 MATE efflux family protei no no 0.761 0.703 0.246 6e-12
Q58119450 Uncharacterized transport yes no 0.455 0.522 0.271 2e-10
Q945F0543 Enhanced disease suscepti no no 0.593 0.563 0.241 9e-10
A1L1P9 590 Multidrug and toxin extru yes no 0.552 0.483 0.244 3e-09
P76352495 Uncharacterized transport N/A no 0.684 0.713 0.244 5e-09
>sp|Q9SYD6|MATE1_ARATH MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2 Back     alignment and function desciption
 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/516 (69%), Positives = 417/516 (80%), Gaps = 3/516 (0%)

Query: 1   MAEEFGSPACKKSPPIFIFFKDIRHALKLDELGLEIAQIALPASLALTADPIASLIDTAF 60
           M  E G        P++IFF D R  LK DELGLEIA+IALPA+LALTADPIASL+DTAF
Sbjct: 1   MMSEDGYNTDFPRNPLYIFFSDFRSVLKFDELGLEIARIALPAALALTADPIASLVDTAF 60

Query: 61  IGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAREA-EESDSIEE 119
           IGQIG VELAAVGVSIALFNQVSRIAIFPLVS+TTSFVAEEDA  S      +  + IE 
Sbjct: 61  IGQIGPVELAAVGVSIALFNQVSRIAIFPLVSITTSFVAEEDACSSQQDTVRDHKECIEI 120

Query: 120 GSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILG 179
           G  N   E  ELIP         E K  +S  ++ KP    ++R IPSASSA++IG +LG
Sbjct: 121 GINNPTEETIELIPEKHKDSLSDEFKTSSSIFSISKP--PAKKRNIPSASSALIIGGVLG 178

Query: 180 LIQAIVLIAGAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDT 239
           L QA+ LI+ A PLL+FMG+  +SPM+ P+Q+YL+LRSLGAPAVLLSLA QGVFRGFKDT
Sbjct: 179 LFQAVFLISAAKPLLSFMGVKHDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDT 238

Query: 240 KTPLYATVAGDLTNIILDPIFIFVFRLGVSGAAIAHVISQYLIAIILLWKLIQQVDLIPP 299
            TPL+ATV GD+TNIILDPIFIFVFRLGV+GAA AHVISQYL+  ILLWKL+ QVD+   
Sbjct: 239 TTPLFATVIGDVTNIILDPIFIFVFRLGVTGAATAHVISQYLMCGILLWKLMGQVDIFNM 298

Query: 300 SMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATSLLA 359
           S K L+F RF++NGFLLL+RV+AVTFCVTLSASLAAR+G TSMAAFQVCLQVWLATSLLA
Sbjct: 299 STKHLQFCRFMKNGFLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLA 358

Query: 360 DGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDA 419
           DG AVAGQAILAS+FAKKDY+RA ++A+RVLQLGLVLG VL  ILG  L +GA++FT+D 
Sbjct: 359 DGYAVAGQAILASAFAKKDYKRAAATASRVLQLGLVLGFVLAVILGAGLHFGARVFTKDD 418

Query: 420 DVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSAT 479
            V+ LI IG+PFVA TQPIN+LAFVFDG+NFGASD+ YAA S+V VA VSILCLL LS+T
Sbjct: 419 KVLHLISIGLPFVAGTQPINALAFVFDGVNFGASDFGYAAASLVMVAIVSILCLLFLSST 478

Query: 480 NGFVGLWIGLTIYMSLRAFAGFWRIGTGTGPWAFLR 515
           +GF+GLW GLTIYMSLRA  GFWRIGTGTGPW+FLR
Sbjct: 479 HGFIGLWFGLTIYMSLRAAVGFWRIGTGTGPWSFLR 514
Citrate transporter critical for aluminum tolerance. Responsible for citrate exudation into the rhizosphere to protect roots from aluminum toxicity.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SFB0|FRD3_ARATH MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3 PE=1 SV=1 Back     alignment and function description
>sp|Q84K71|MATE2_ARATH MATE efflux family protein 2, chloroplastic OS=Arabidopsis thaliana GN=DTX44 PE=2 SV=1 Back     alignment and function description
>sp|Q9SVE7|MATE3_ARATH MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana GN=DTX45 PE=2 SV=2 Back     alignment and function description
>sp|P28303|DINF_ECOLI DNA-damage-inducible protein F OS=Escherichia coli (strain K12) GN=dinF PE=2 SV=1 Back     alignment and function description
>sp|Q8W4G3|MATE4_ARATH MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1 Back     alignment and function description
>sp|Q58119|Y709_METJA Uncharacterized transporter MJ0709 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0709 PE=3 SV=1 Back     alignment and function description
>sp|Q945F0|EDS5_ARATH Enhanced disease susceptibility 5 OS=Arabidopsis thaliana GN=EDS5 PE=2 SV=1 Back     alignment and function description
>sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1 Back     alignment and function description
>sp|P76352|YEEO_ECOLI Uncharacterized transporter YeeO OS=Escherichia coli (strain K12) GN=yeeO PE=3 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query516
449448721521 PREDICTED: MATE efflux family protein 1- 0.972 0.963 0.743 0.0
224104145493 predicted protein [Populus trichocarpa] 0.949 0.993 0.758 0.0
225435446513 PREDICTED: MATE efflux family protein 1 0.986 0.992 0.735 0.0
356557725552 PREDICTED: MATE efflux family protein 1- 0.959 0.896 0.715 0.0
343761168553 multidrug resistance pump [Glycine max] 0.961 0.896 0.712 0.0
356557727545 PREDICTED: MATE efflux family protein 1- 0.945 0.895 0.717 0.0
351720740555 aluminum-activated citrate transporter [ 0.965 0.897 0.710 0.0
297847500514 mate efflux family protein [Arabidopsis 0.967 0.970 0.713 0.0
357454281507 Multidrug export protein mepA [Medicago 0.949 0.966 0.698 0.0
411596167519 aluminum-activated citrate transporter [ 0.996 0.990 0.692 0.0
>gi|449448721|ref|XP_004142114.1| PREDICTED: MATE efflux family protein 1-like [Cucumis sativus] gi|449502611|ref|XP_004161692.1| PREDICTED: MATE efflux family protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/506 (74%), Positives = 433/506 (85%), Gaps = 4/506 (0%)

Query: 11  KKSPPIFIFFKDIRHALKLDELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELA 70
           K   PI IFFK+ RH  KLDELG EIAQIALPA+LAL ADP+ASL+DTAFIGQIGSVELA
Sbjct: 18  KTKTPIRIFFKNARHVFKLDELGREIAQIALPAALALAADPVASLVDTAFIGQIGSVELA 77

Query: 71  AVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAREAEESDSIEEGSANGNSEDRE 130
           AVGV+IALFNQVSRIAIFPLVSVTTSFVAEED I SV+ EAE+++ +E G    N E   
Sbjct: 78  AVGVAIALFNQVSRIAIFPLVSVTTSFVAEEDTIGSVSIEAEDNNDMESGFFT-NDEKSS 136

Query: 131 LIPRSDSTE-ADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAG 189
           +IP++   E A    KPL         K E+ RRYIPSASSA+VIG +LGLIQAI LI+G
Sbjct: 137 MIPQNGKGEDAHHSRKPLEKKFE--NSKVENGRRYIPSASSALVIGGVLGLIQAIFLISG 194

Query: 190 AVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAG 249
           A PLLNFMG+ S+S M++PAQ+YLTLRSLGAPAVLLSLA+QGVFRGFKDTKTPLYATVAG
Sbjct: 195 ARPLLNFMGVKSDSLMMTPAQQYLTLRSLGAPAVLLSLAIQGVFRGFKDTKTPLYATVAG 254

Query: 250 DLTNIILDPIFIFVFRLGVSGAAIAHVISQYLIAIILLWKLIQQVDLIPPSMKRLKFGRF 309
           D TNIILDPIFIFVFRLGVSGAAIAHVISQYLIA+IL W+L+ QVDL+PPS+K L+F RF
Sbjct: 255 DATNIILDPIFIFVFRLGVSGAAIAHVISQYLIALILFWRLMGQVDLLPPSIKHLQFSRF 314

Query: 310 LQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAI 369
           L+NGFLLL+RV+AVTFCVTL+ASL+ARQG TSMAAFQVCLQVWL TSLLADGLAVAGQAI
Sbjct: 315 LKNGFLLLMRVIAVTFCVTLAASLSARQGSTSMAAFQVCLQVWLTTSLLADGLAVAGQAI 374

Query: 370 LASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGI 429
           LA++FA+ D+++AT++A+RVLQLGL LGL+L   LGV + +GA+LFT D DV+RLIGIGI
Sbjct: 375 LATAFAQNDHDKATAAASRVLQLGLFLGLMLAVFLGVGMTFGARLFTSDVDVLRLIGIGI 434

Query: 430 PFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGL 489
           PFVA+TQPIN+LAFVFDGINFGASD+AY+ACSMV VA +SI CL  LS+T GF+G+W+ L
Sbjct: 435 PFVAATQPINALAFVFDGINFGASDFAYSACSMVLVAIISIFCLFILSSTQGFIGIWVAL 494

Query: 490 TIYMSLRAFAGFWRIGTGTGPWAFLR 515
           TIYMSLR  AGF RIGTGTGPW FLR
Sbjct: 495 TIYMSLRTLAGFGRIGTGTGPWYFLR 520

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224104145|ref|XP_002313336.1| predicted protein [Populus trichocarpa] gi|222849744|gb|EEE87291.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225435446|ref|XP_002285445.1| PREDICTED: MATE efflux family protein 1 [Vitis vinifera] gi|297746319|emb|CBI16375.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356557725|ref|XP_003547162.1| PREDICTED: MATE efflux family protein 1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|343761168|gb|AEM55566.1| multidrug resistance pump [Glycine max] Back     alignment and taxonomy information
>gi|356557727|ref|XP_003547163.1| PREDICTED: MATE efflux family protein 1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|351720740|ref|NP_001238722.1| aluminum-activated citrate transporter [Glycine max] gi|183229552|gb|ACC60274.1| aluminum-activated citrate transporter [Glycine max] Back     alignment and taxonomy information
>gi|297847500|ref|XP_002891631.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata] gi|297337473|gb|EFH67890.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357454281|ref|XP_003597421.1| Multidrug export protein mepA [Medicago truncatula] gi|355486469|gb|AES67672.1| Multidrug export protein mepA [Medicago truncatula] Back     alignment and taxonomy information
>gi|411596167|gb|AFW19998.1| aluminum-activated citrate transporter [Brassica napus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query516
TAIR|locus:2008236515 AT1G51340 [Arabidopsis thalian 0.967 0.968 0.679 6.2e-172
TAIR|locus:2077477526 FRD3 "FERRIC REDUCTASE DEFECTI 0.978 0.960 0.566 4.6e-144
TAIR|locus:2057135521 AT2G38330 "AT2G38330" [Arabido 0.689 0.683 0.446 3.5e-105
TAIR|locus:2121783560 AT4G38380 [Arabidopsis thalian 0.686 0.632 0.446 3.7e-97
UNIPROTKB|P28303459 dinF "DinF MATE Transporter" [ 0.647 0.727 0.240 6.7e-20
UNIPROTKB|Q9KVQ1454 VC_0090 "DNA-damage-inducible 0.639 0.726 0.244 6.3e-17
TIGR_CMR|VC_0090454 VC_0090 "DNA-damage-inducible 0.639 0.726 0.244 6.3e-17
UNIPROTKB|Q8E8P4455 dinF "DNA damage-inducible mul 0.629 0.714 0.248 1.9e-16
TIGR_CMR|SO_4617455 SO_4617 "DNA-damage-inducible 0.629 0.714 0.248 1.9e-16
UNIPROTKB|P76352495 yeeO "YeeO MATE transporter" [ 0.682 0.711 0.235 1.1e-13
TAIR|locus:2008236 AT1G51340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1671 (593.3 bits), Expect = 6.2e-172, P = 6.2e-172
 Identities = 341/502 (67%), Positives = 396/502 (78%)

Query:    15 PIFIFFKDIRHALKLDELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGV 74
             P++IFF D R  LK DELGLEIA+IALPA+LALTADPIASL+DTAFIGQIG VELAAVGV
Sbjct:    15 PLYIFFSDFRSVLKFDELGLEIARIALPAALALTADPIASLVDTAFIGQIGPVELAAVGV 74

Query:    75 SIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAREAEE-SDSIEEGSANGNSEDRELIP 133
             SIALFNQVSRIAIFPLVS+TTSFVAEEDA  S      +  + IE G  N   E  ELIP
Sbjct:    75 SIALFNQVSRIAIFPLVSITTSFVAEEDACSSQQDTVRDHKECIEIGINNPTEETIELIP 134

Query:   134 RSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPL 193
                      E K  +S  ++ KP  +  +R IPSASSA++IG +LGL QA+ LI+ A PL
Sbjct:   135 EKHKDSLSDEFKTSSSIFSISKPPAK--KRNIPSASSALIIGGVLGLFQAVFLISAAKPL 192

Query:   194 LNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTN 253
             L+FMG+  +SPM+ P+Q+YL+LRSLGAPAVLLSLA QGVFRGFKDT TPL+ATV GD+TN
Sbjct:   193 LSFMGVKHDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTN 252

Query:   254 IILDPIFIFVFRLGVSGAAIAHVISQYLIAIILLWKLIQQVDLIPPSMKRLKFGRFLQNG 313
             IILDPIFIFVFRLGV+GAA AHVISQYL+  ILLWKL+ QVD+   S K L+F RF++NG
Sbjct:   253 IILDPIFIFVFRLGVTGAATAHVISQYLMCGILLWKLMGQVDIFNMSTKHLQFCRFMKNG 312

Query:   314 FLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASS 373
             FLLL+RV+AVTFCVTLSASLAAR+G TSMAAFQVCLQVWLATSLLADG AVAGQAILAS+
Sbjct:   313 FLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYAVAGQAILASA 372

Query:   374 FAKKDYERATSSXXXXXXXXXXXXXXXXXXXXXXXQYGAKLFTRDADVVRLIGIGIPFVA 433
             FAKKDY+RA ++                        +GA++FT+D  V+ LI IG+PFVA
Sbjct:   373 FAKKDYKRAAATASRVLQLGLVLGFVLAVILGAGLHFGARVFTKDDKVLHLISIGLPFVA 432

Query:   434 STQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYM 493
              TQPIN+LAFVFDG+NFGASD+ YAA S+V VA VSILCLL LS+T+GF+GLW GLTIYM
Sbjct:   433 GTQPINALAFVFDGVNFGASDFGYAAASLVMVAIVSILCLLFLSSTHGFIGLWFGLTIYM 492

Query:   494 SLRAFAGFWRIGTGTGPWAFLR 515
             SLRA  GFWRIGTGTGPW+FLR
Sbjct:   493 SLRAAVGFWRIGTGTGPWSFLR 514
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
TAIR|locus:2077477 FRD3 "FERRIC REDUCTASE DEFECTIVE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057135 AT2G38330 "AT2G38330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121783 AT4G38380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P28303 dinF "DinF MATE Transporter" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KVQ1 VC_0090 "DNA-damage-inducible protein F" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0090 VC_0090 "DNA-damage-inducible protein F" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|Q8E8P4 dinF "DNA damage-inducible multidrug and toxin efflux protein DinF" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4617 SO_4617 "DNA-damage-inducible protein F" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P76352 yeeO "YeeO MATE transporter" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SYD6MATE1_ARATHNo assigned EC number0.69960.99410.9961yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 1e-113
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 4e-65
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 7e-46
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 2e-41
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 1e-32
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 3e-29
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 6e-29
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 2e-27
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 9e-25
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 4e-24
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 9e-24
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 1e-23
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 3e-22
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 1e-20
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 8e-19
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-18
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 1e-18
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 3e-18
PRK10367441 PRK10367, PRK10367, DNA-damage-inducible SOS respo 2e-17
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 2e-14
cd13148441 cd13148, MATE_like_3, Uncharacterized subfamily of 2e-11
PRK10189478 PRK10189, PRK10189, MATE family multidrug exporter 4e-10
pfam01554161 pfam01554, MatE, MatE 5e-10
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 2e-09
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 3e-09
PRK09575453 PRK09575, vmrA, multidrug efflux pump VmrA; Review 6e-09
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 6e-08
pfam01554161 pfam01554, MatE, MatE 3e-07
cd13123420 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of 5e-06
COG0728518 COG0728, MviN, Uncharacterized membrane protein, p 1e-04
pfam03023452 pfam03023, MVIN, MviN-like protein 1e-04
TIGR01695502 TIGR01695, mviN, integral membrane protein MviN 2e-04
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 4e-04
cd12082 420 cd12082, MATE_like, Multidrug and toxic compound e 0.001
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 0.001
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 0.002
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information 
 Score =  341 bits (877), Expect = e-113
 Identities = 152/480 (31%), Positives = 230/480 (47%), Gaps = 67/480 (13%)

Query: 35  EIAQIALPASLALTADPIASLIDTAFIGQIGS-VELAAVGVSIALFNQVSRIAIFPLVSV 93
           EI  +ALPA L+    P+  L+DTA +G +GS   L AV +   +FN +  +  F  +  
Sbjct: 4   EILALALPAILSNITVPLLGLVDTAVVGHLGSAAYLGAVALGTTIFNTLFWLFGFLRMG- 62

Query: 94  TTSFVAEEDAIKSVAREAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNV 153
           TT  VA+                     A G  +  E I                     
Sbjct: 63  TTGLVAQ---------------------ALGAGDREEAIA-------------------- 81

Query: 154 VKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPLLNFMGI--GSESPMLSPAQK 211
                            A+++   +GL+  ++      PLL    +  G+ + + + A++
Sbjct: 82  -------------LLVRALLLALAIGLLLILLQ----SPLLALALLLLGASAAVAALARQ 124

Query: 212 YLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVSGA 271
           YL +R LGAPAVLL+    G FRG +DT+TPL   + G++ NI+LDP+F+F    GV+GA
Sbjct: 125 YLRIRILGAPAVLLNYVATGWFRGLQDTRTPLILQIVGNVVNIVLDPLFVFGLGWGVAGA 184

Query: 272 AIAHVISQYLIAIILLWKLIQQVDLIPPSMKR-----LKFGRFLQNGFLLLIRVMAVTFC 326
           A+A VI+QYL A++ LW L ++V L+  S+ R         R  +    + IR +A+   
Sbjct: 185 ALATVIAQYLGALLGLWLLRRRVRLLGKSLSRRLPSKAALKRLFKLNRDIFIRTLALLAA 244

Query: 327 VTLSASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSA 386
                +LAAR G   +AA Q+ LQ WL +S   DG A A +A++  +    D + A   A
Sbjct: 245 FLFFTALAARLGDVILAANQILLQFWLLSSYFLDGFAYAAEALVGRALGAGDRKAARRVA 304

Query: 387 ARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFD 446
            R+LQ GL LG++L  +  +  +   +LFT D  V+ L    +P++A   PI +LAFV D
Sbjct: 305 RRLLQWGLGLGVLLALLFFLGGEPIIRLFTDDPAVLALAATYLPWLALLPPIGALAFVLD 364

Query: 447 GINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGFWRIGT 506
           GI  GA+D  Y   SM+    V +  L  L    G  GLW+ L ++M LR      R+  
Sbjct: 365 GIFIGATDTRYLRNSMLVSLAVFLPLLFLLVPLWGNHGLWLALILFMLLRGLTLALRLPR 424

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|182413 PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240553 cd13148, MATE_like_3, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|182293 PRK10189, PRK10189, MATE family multidrug exporter; Provisional Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|236576 PRK09575, vmrA, multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>gnl|CDD|217323 pfam03023, MVIN, MviN-like protein Back     alignment and domain information
>gnl|CDD|233536 TIGR01695, mviN, integral membrane protein MviN Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 516
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 99.98
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.97
PRK10459492 colanic acid exporter; Provisional 99.97
COG2244480 RfbX Membrane protein involved in the export of O- 99.94
PRK10189 478 MATE family multidrug exporter; Provisional 99.89
PRK00187 464 multidrug efflux protein NorA; Provisional 99.88
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.88
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.88
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.87
PRK01766 456 multidrug efflux protein; Reviewed 99.86
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.77
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.74
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.73
TIGR01695502 mviN integral membrane protein MviN. This model re 99.72
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.61
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.6
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.59
PRK10459492 colanic acid exporter; Provisional 99.56
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.54
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.53
PRK15099416 O-antigen translocase; Provisional 99.51
COG2244480 RfbX Membrane protein involved in the export of O- 99.39
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.18
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.18
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.03
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.58
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.43
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.39
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.34
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.19
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 98.08
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.97
COG4267467 Predicted membrane protein [Function unknown] 97.96
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.51
COG4267 467 Predicted membrane protein [Function unknown] 90.67
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-53  Score=438.90  Aligned_cols=426  Identities=29%  Similarity=0.452  Sum_probs=391.4

Q ss_pred             ChHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhccChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhhh
Q 010159           30 DELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAR  109 (516)
Q Consensus        30 ~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (516)
                      ++..|+++++++|++++++.+++++++|++++||+|++++||++++.++.+.+..+. .++....+++++          
T Consensus        13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~-~gl~~g~~~lia----------   81 (455)
T COG0534          13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIF-IGLGTGTTVLVA----------   81 (455)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHH----------
Confidence            446899999999999999999999999999999999999999999999988776655 334444444433          


Q ss_pred             hhhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010159          110 EAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAG  189 (516)
Q Consensus       110 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~  189 (516)
                                                               |++|+||+++.++.   ..+++.++++++++..++.+.+
T Consensus        82 -----------------------------------------q~~Ga~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~  117 (455)
T COG0534          82 -----------------------------------------QAIGAGDRKKAKRV---LGQGLLLALLLGLLLAILLLFF  117 (455)
T ss_pred             -----------------------------------------HHHcCCchHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence                                                     34555999999887   9999999999999999999999


Q ss_pred             hHhHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhh-cc-cc
Q 010159          190 AVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFV-FR-LG  267 (516)
Q Consensus       190 ~~~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~-~~-~G  267 (516)
                      .++++.+++.++|  +.+.+.+|+++..++.|+..++.++.+.+|+.||+|.+++.+++++++|+++|++|+++ ++ +|
T Consensus       118 ~~~ll~~l~~~~~--v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lG  195 (455)
T COG0534         118 AEPLLRLLGAPAE--VLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLG  195 (455)
T ss_pred             HHHHHHHcCCCHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhcccccc
Confidence            9999999998776  89999999999999999999999999999999999999999999999999999999998 57 99


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcc---CC---CchhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhChHH
Q 010159          268 VSGAAIAHVISQYLIAIILLWKLIQQVD---LI---PPSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTS  341 (516)
Q Consensus       268 v~Gaa~at~i~~~~~~l~~~~~~~~~~~---~~---~~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~g~~~  341 (516)
                      +.|+|+||++++.+..++..+++.++++   ..   ..++++..+|++++.|.|.+++++.....+...+.+++++|++.
T Consensus       196 v~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~  275 (455)
T COG0534         196 VAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVA  275 (455)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence            9999999999999999999999887653   11   11344456899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHH
Q 010159          342 MAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADV  421 (516)
Q Consensus       342 va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~  421 (516)
                      +|+|+++.++.++.++++.|++++.+|++++++|++|+|++++..+.+.++++.++...+++++++++++.++|++|+|+
T Consensus       276 lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v  355 (455)
T COG0534         276 LAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEV  355 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHH-HHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHH
Q 010159          422 VRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACS-MVFVAFVSILCLLGLSAT-NGFVGLWIGLTIYMSLRAFA  499 (516)
Q Consensus       422 ~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~-~~~~~~~~i~l~~~l~~~-~G~~G~~~a~~i~~~i~~~~  499 (516)
                      .+.+..++++..+..++++.+.+..+.+||.||+|.++.. .+..|++.+|+.+++.+. +|..|+|+++..++.+..++
T Consensus       356 ~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~  435 (455)
T COG0534         356 IALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAIL  435 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999995 556789999999999988 99999999999999999999


Q ss_pred             HHHHHhcCCCCCccc
Q 010159          500 GFWRIGTGTGPWAFL  514 (516)
Q Consensus       500 ~~~~~~~~~~~w~~l  514 (516)
                      ..+++++  ++|++.
T Consensus       436 ~~~~~~~--~~~~~~  448 (455)
T COG0534         436 LLLRLRR--GRWRRK  448 (455)
T ss_pred             HHHHHHH--hhhhhh
Confidence            9999987  556653

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 8e-28
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  115 bits (289), Expect = 8e-28
 Identities = 72/354 (20%), Positives = 127/354 (35%), Gaps = 24/354 (6%)

Query: 171 AMVIGSILGLIQAIVLIAGAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQ 230
            +++  ++ +    VL      ++ FM +  E  M +    Y+       PA LL  A++
Sbjct: 94  GLILALLVSVPIIAVLFQTQ-FIIRFMDV--EEAMATKTVGYMHAVIFAVPAYLLFQALR 150

Query: 231 GVFRGFKDTKTPLYATVAGDLTNIILDPIFIF----VFRLGVSGAAIAHVISQYLIAIIL 286
               G   TK  +     G L NI L+ IF++       LG  G  +A  I  +++ ++L
Sbjct: 151 SFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLL 210

Query: 287 LWKLIQQVDLIPPSMKRLKFGRFLQNGFLLLIRV---MAVTFCV-----TLSASLAARQG 338
           L+  I     +        F +      + L R+   +A           + A L A  G
Sbjct: 211 LF-YIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLG 269

Query: 339 PTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGL 398
            T +AA QV L       +    +  A    +     ++D + A  +A   L  GL    
Sbjct: 270 STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATAC 329

Query: 399 VLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYA 458
           +   +  +  +  A L+T +  VV L    + F A  Q ++++  V  G   G  D    
Sbjct: 330 ITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAI 389

Query: 459 ACSMVF--------VAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGFWRI 504
                           ++  +         G  G W+G  I +S  A     R+
Sbjct: 390 FHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRL 443

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query516
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 99.76
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=1.5e-45  Score=382.85  Aligned_cols=422  Identities=20%  Similarity=0.217  Sum_probs=373.7

Q ss_pred             cChHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhccChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhh
Q 010159           29 LDELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVA  108 (516)
Q Consensus        29 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (516)
                      .++..|++++.++|.+++++.+.+++.+|+.+++++|++++|+++++.++.+....+. .++.....+.+          
T Consensus         7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~-~g~~~~~~~~i----------   75 (460)
T 3mkt_A            7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG-VGLLMALVPVV----------   75 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHH-HHHHHHHGGGC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----------
Confidence            3456799999999999999999999999999999999999999999988866544433 33333333333          


Q ss_pred             hhhhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010159          109 REAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIA  188 (516)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~  188 (516)
                                          +|                     ++|++|+++.++.   +.+++.+.++.+++.+++ +.
T Consensus        76 --------------------s~---------------------~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~  110 (460)
T 3mkt_A           76 --------------------AQ---------------------LNGAGRQHKIPFE---VHQGLILALLVSVPIIAV-LF  110 (460)
T ss_dssp             --------------------TT---------------------TTSSSSTTTHHHH---HHHHHHHHHHHHHHHHHH-HH
T ss_pred             --------------------HH---------------------HHcCCChhHHHHH---HHHHHHHHHHHHHHHHHH-HH
Confidence                                23                     4444777777776   889999999998887665 78


Q ss_pred             hhHhHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhh----c
Q 010159          189 GAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFV----F  264 (516)
Q Consensus       189 ~~~~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~----~  264 (516)
                      +.+++..+++.+++  ..+.+..|++++.++.++..+.....+++|+.||++.+++.++++.++|+++++++++.    |
T Consensus       111 ~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p  188 (460)
T 3mkt_A          111 QTQFIIRFMDVEEA--MATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAP  188 (460)
T ss_dssp             HHHTTCSSCSSTTH--HHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCC
T ss_pred             hHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            88999998876665  78899999999999999999999999999999999999999999999999999999975    4


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCC-------chhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 010159          265 RLGVSGAAIAHVISQYLIAIILLWKLIQQVDLIP-------PSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQ  337 (516)
Q Consensus       265 ~~Gv~Gaa~at~i~~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~  337 (516)
                      ++|+.|+++++.+++.+..++..++++++++..+       .+.++..+|++++++.|.+++.+...+.+.+++.+++++
T Consensus       189 ~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~  268 (460)
T 3mkt_A          189 ELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPL  268 (460)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            7999999999999999999988888766543221       133445689999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCC
Q 010159          338 GPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTR  417 (516)
Q Consensus       338 g~~~va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~  417 (516)
                      |++++++|+++.++.++..++..+++++..|.+++++|++|.+++++..+++.+++..+++++++++.++++++.++|++
T Consensus       269 g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~  348 (460)
T 3mkt_A          269 GSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTE  348 (460)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHHHH-HHHHHHHHHHHhhc-------cchHHHHHHH
Q 010159          418 DADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFV-AFVSILCLLGLSAT-------NGFVGLWIGL  489 (516)
Q Consensus       418 d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~-~~~~i~l~~~l~~~-------~G~~G~~~a~  489 (516)
                      |+++.+.+.+++++++++.++++++.+..+++++.||+|.+++..+.. +++++|+++++.+.       +|..|+|+++
T Consensus       349 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~  428 (460)
T 3mkt_A          349 NQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGF  428 (460)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHH
Confidence            988888999999999999999999999999999999999999976665 59999999999987       9999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCC
Q 010159          490 TIYMSLRAFAGFWRIGTGT  508 (516)
Q Consensus       490 ~i~~~i~~~~~~~~~~~~~  508 (516)
                      .+++++..++..++++|+.
T Consensus       429 ~~~~~~~~~~~~~~~~~~~  447 (460)
T 3mkt_A          429 IIGLSAAALMLGQRLYWLQ  447 (460)
T ss_dssp             HHHHHHHHHHHHSSSSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999988887777643
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00