Citrus Sinensis ID: 010237

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
Protein Sequence
MATSLSIHQNLILSPFPNRTDIQTPLFTRTHFGLKPFLRGSICVAKFGLRPDPNSADGVKELLGVAERLLFTLADAAVSSSDAVTTTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQIREQEARRRQQREEEKRKAAEAAAKGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNEVSANSEVDGRNEQQSQENLGKVNLP
Secondary Structure (PSIPRED)
cccEEccccccEEccccccccccccccccccccccccccccEEEEEccccccccccccEEEEEccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHEEEEEccccccccEEEEEEEccccccccEEEEEEccccEccccccEEEEEEEEccHHHHHHHHHHHHHHccccccEEEcHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEHcccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEcccccccccEccccccccccEcccccccccEEEccccccccccccccccccccccccccccccccccccHHHccccccccccc
Coil and Loop (DISEMBL)
matslsihqnlilspfpnrtdiqtplftrthfglkpflrgsicvakfglrpdpnsadGVKELLGVAERLLFTLADaavsssdavtttkqnsdwLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAAtfpltkkqveSSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLaginplagclptlatIPVWIGLYRALSnvadeglltegffwipslagpttiaarqngsgiswlfpfvdghpplgwsdtfAYLVLPVLLVVSQYISVKIIQssqnndpnmkssQALTNFLPLMIGYFAlsvpsglslyWFTNNLLSTAQQVWLQKfggakdpmkqfSDIIKDErldinksvpglsstkKEARQAEklttegprpgekFKQIREQEARRRQQREEEKRKAAEAAAKgnqtingeQEREASILGsakgvqtdlvdkddenfpsvtgdnasnigvaingnisshefkenqdTISVFrtgdnevsansevdgrneqqsqenlgkvnlp
Flexible Loop (DISEMBL)
MATSLSIHQNLILSPFPNRTDIQTPLFTRTHFGLKPFLRGSICVAKFGLRPDPNSADGVKELLGVAERLLFTLADaavsssdavtttkqnsdwlsgITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIqssqnndpnmKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIikderldinksvpglsstkkearqaeklttegprpgekfkqIREQEARRRQQREEEKRKAAeaaakgnqtingeqerEASILGSAKGVQTDLVDKDDENfpsvtgdnasnigVAINGNISSHEFKENQDTISVFRTGDNEVsansevdgrneqqsqenlgkvnlp
Low Complexity Region (SEG)
MATSLSIHQNLILSPFPNRTDIQTPLFTRTHFGLKPFLRGSICVAKFGLRPDPNSADGVKELLGVAERLLFTLadaavsssdavtttKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQIreqearrrqqreeekrkaaeaaakGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNEVSANSEVDGRNEQQSQENLGKVNLP
Disordered region (IsUnstruct)
*******HQNLILSPFPNRTDIQTPLFTRTHFGLKPFLRGSICVAKFGLRPDPNSADGVKELLGVAERLLFTLADAAVSSSDAVTTTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTK*****************AIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQ*************ALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAK********I***************************************************************************************************************GVAI**************************************************
Disordered Region (DISOPRED)
*ATSLSIHQNLILSPFPNRTDIQTP**********PFLRGSICVAKFGLRPDPNSADGVKELLGVAERLLFTLADAAVSSSDAVTTTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQ*RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYIS*******************LTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGG********************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MATSLSIHQNLILSPFPNRTDIQTPLFTRTHFGLKPFLRGSICVAKFGLRPDPNSADGVKELLGVAERLLFTLADAA************NSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLDINKSVPGL*****************PRPGEKFKQI***********************************EASILGSAKGVQTDLVDKDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNE*************************
Disordered Region (DISPRO)
*ATSLSIHQNLILSPFPNRTDIQTPLFTRTHFGLKPFLRGSICVAKFGLRPDPNSADGVKELLGVAERLLFTLADAAVSSSDAVTTTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGA************************************************FKQIR*QEARRRQQR****************************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATSLSIHQNLILSPFPNRTDIQTPLFTRTHFGLKPFLRGSICVAKFGLRPDPNSADGVKELLGVAERLLFTLADAAVSSSDAVTTTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQxxxxxxxxxxxxxxxxxxxxxxxAKGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNEVSANSEVDGRNEQQSQENLGKVNLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	514	2.2.26 [Sep-21-2011]
Q9FYL3	499	ALBINO3-like protein 1, c	yes	no	0.929	0.957	0.592	1e-157
Q8LBP4	462	Inner membrane protein AL	no	no	0.628	0.699	0.627	1e-124
Q9FY06	442	Inner membrane protein PP	N/A	no	0.735	0.855	0.553	1e-118
Q8LKI3	422	Inner membrane ALBINO3-li	N/A	no	0.453	0.552	0.634	1e-87
Q8S339	495	Inner membrane ALBINO3-li	N/A	no	0.527	0.547	0.510	2e-78
A0LLH3	553	Membrane protein insertas	yes	no	0.478	0.444	0.310	4e-29
Q9RNL5	579	Membrane protein insertas	yes	no	0.431	0.383	0.334	6e-28
O66103	622	Membrane protein insertas	yes	no	0.431	0.356	0.341	9e-28
Q04XE2	622	Membrane protein insertas	yes	no	0.371	0.307	0.342	2e-27
Q04W30	622	Membrane protein insertas	yes	no	0.371	0.307	0.342	2e-27

>sp|Q9FYL3|ALB31_ARATH ALBINO3-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=ALB3L1 PE=2 SV=3

 Score =  556 bits (1433), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 308/520 (59%), Positives = 384/520 (73%), Gaps = 42/520 (8%)

Query: 1   MATSLSIH-QNLILSPFPNRTDIQTPLFTRTHFGLKPFL---RGSICVAKFGLRPDPNSA 56
           M++++S+   +LILS F     +Q   F R+ F   P     R    VA+ G RPD  S 
Sbjct: 1   MSSTISLKPTHLILSSFSTGKVLQ---FRRSRFSHTPSSSSSRYRTLVAQLGFRPD--SF 55

Query: 57  DGVKELLGVAERLLFTLADAAVSSSD-----AVTTTK--QNSDWLSGITNVMETVLKVLK 109
           D +K+    AE LL+T+ADAAVSSS+     A TTTK  Q++DW SGI N MET+LKVLK
Sbjct: 56  DFIKDH---AENLLYTIADAAVSSSETFESVAGTTTKTTQSNDWFSGIANYMETILKVLK 112

Query: 110 DGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQE 169
           DG+ST+HVPY+YGFAIILLTV+VKAATFPLTKKQVES+MAM+SL PQ+KAIQERYAGDQE
Sbjct: 113 DGLSTVHVPYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQE 172

Query: 170 RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP 229
           +IQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP
Sbjct: 173 KIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP 232

Query: 230 TTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPN 289
           TT+AARQNGSGISWLFPF++GHPPLGW DT AYLVLP+LLV SQY+S++I+QSSQ+NDP 
Sbjct: 233 TTVAARQNGSGISWLFPFIEGHPPLGWPDTLAYLVLPLLLVFSQYLSIQIMQSSQSNDPA 292

Query: 290 MKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDI 349
           MKSSQA+T  LPLMIGYFALSVPSGLSLYW TNN+LSTAQQVWLQK+GGAK+P+++F+++
Sbjct: 293 MKSSQAVTKLLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKYGGAKNPVEKFTNL 352

Query: 350 I----KDERLDINKSVPGLSSTKKE-----ARQAEKLTTEGPRPGEKFKQIREQEARRRQ 400
           +    K ++++ + S P +  +  E      +  EK+T E P+PGE+F+ ++EQEA+RR 
Sbjct: 353 VTKEDKTQQIEKSFSEPLVQKSVSELKIPREKGGEKVTPECPKPGERFRLLKEQEAKRR- 411

Query: 401 QREEEKRKAAEAAAKGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNI 460
            RE+E+R+ AEAA     T    ++ E S         T +V +DD+       D  S+ 
Sbjct: 412 -REKEERQKAEAALSNQNTDKAHEQDEKS--------DTAIVAEDDKKTELSAVDETSDG 462

Query: 461 GVAINGNISSHEFKENQDTISVFRTG-DNEVSANSEVDGR 499
            VA+NG  S    ++++ T   F  G D E   + E + R
Sbjct: 463 TVAVNGKPS---IQKDETTNGTFGIGHDTEQQHSHETEKR 499

Probably required for the insertion of integral membrane proteins into the chloroplast thylakoid membranes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBP4|ALB3_ARATH Inner membrane protein ALBINO3, chloroplastic OS=Arabidopsis thaliana GN=ALB3 PE=1 SV=2

 Score =  447 bits (1149), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/346 (62%), Positives = 272/346 (78%), Gaps = 23/346 (6%)

Query: 66  AERLLFTLADAAVSSSDAVTTT-----KQNSDWLSGITNVMETVLKVLKDGMSTLHVPYA 120
           AE LL+T+ADAAV  +D+V TT     +++  W   I++ ME VLK+LKDG+S +HVPYA
Sbjct: 80  AESLLYTIADAAVVGADSVVTTDSSAVQKSGGWFGFISDAMELVLKILKDGLSAVHVPYA 139

Query: 121 YGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYK 180
           YGFAIILLT+IVKAAT+PLTK+QVES++AM++L P++KAIQ+RYAG+QERIQLET+RLYK
Sbjct: 140 YGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYK 199

Query: 181 LAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSG 240
            AG+NPLAGCLPTLATIPVWIGLY+ALSNVA+EGL TEGFFWIPSL GPT+IAARQ+GSG
Sbjct: 200 QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTSIAARQSGSG 259

Query: 241 ISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFL 300
           ISWLFPFVDGHPPLGW DT AYLVLPVLL+ SQY+S++I++  Q +DP  K++  +  FL
Sbjct: 260 ISWLFPFVDGHPPLGWYDTVAYLVLPVLLIASQYVSMEIMKPPQTDDPAQKNTLLVFKFL 319

Query: 301 PLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLDINKS 360
           PLMIGYFALSVPSGLS+YW TNN+LSTAQQV+L+K GGAK  M        DE       
Sbjct: 320 PLMIGYFALSVPSGLSIYWLTNNVLSTAQQVYLRKLGGAKPNM--------DEN------ 365

Query: 361 VPGLSSTKKEARQAEKLTTEGPRPGEKFKQIREQEARRRQQREEEK 406
               +S    A +A++   +    GE+F+Q++EQE R ++ +   K
Sbjct: 366 ----ASKIISAGRAKRSIAQPDDAGERFRQLKEQEKRSKKNKAVAK 407

Required for the insertion of some light harvesting chlorophyll-binding proteins (LHCP) into the chloroplast thylakoid membrane. Required for the insertion of LHCB1, LHCB4.1 and LHCB5 proteins into thylakoid membrane, while it is not required for insertion of proteins PsbX, PsbW and PsbY.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FY06|PPF1_PEA Inner membrane protein PPF-1, chloroplastic OS=Pisum sativum GN=PPF-1 PE=2 SV=2

 Score =  424 bits (1090), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/423 (55%), Positives = 304/423 (71%), Gaps = 45/423 (10%)

Query: 17  PNRTDIQTPLFTRTHFGLKPFLRGSICVAKFGLRPDPNSADGVKELLGV---AERLLFTL 73
           PNRT     LFT+  F              F   P   S     +L G+   AE LL+TL
Sbjct: 25  PNRTR----LFTKVQF-------------SFHQLPPIQSVSHSVDLSGIFARAEGLLYTL 67

Query: 74  ADAAVSSSDAVTTT---KQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTV 130
           ADA V++  A +T    ++N  W   I++ ME VLKVLKDG+S++HVPY+YGFAIILLTV
Sbjct: 68  ADATVAADAAASTDVAAQKNGGWFGFISDGMEFVLKVLKDGLSSVHVPYSYGFAIILLTV 127

Query: 131 IVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGC 190
           IVKAAT PLTK+QVES++AM++L P++KAIQERYAG+QERIQLET+RLY  AG+NPLAGC
Sbjct: 128 IVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQERIQLETSRLYTQAGVNPLAGC 187

Query: 191 LPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDG 250
           LPTLATIPVWIGLY+ALSNVA+EGLLTEGF WIPSL GPT+IAARQ+GSGISWLFPFVDG
Sbjct: 188 LPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGGPTSIAARQSGSGISWLFPFVDG 247

Query: 251 HPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALS 310
           HP LGW DT AYLVLPVLL+VSQY+S++I++  Q NDPN K++  +  FLPLMIGYF+LS
Sbjct: 248 HPLLGWYDTAAYLVLPVLLIVSQYVSMEIMKPPQTNDPNQKNTLLIFKFLPLMIGYFSLS 307

Query: 311 VPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLDINKSVPGLSSTKKE 370
           VPSGL++YWFTNN+LSTAQQVWL+K GGAK                +N++  G+ +    
Sbjct: 308 VPSGLTIYWFTNNVLSTAQQVWLRKLGGAKP--------------AVNENAGGIIT---- 349

Query: 371 ARQAEKLTTEGPRPGEKFKQIREQEARRRQQR----EEEKRKAAEAAAKGNQTINGEQER 426
           A QA++  ++  + GE+F+Q++E+E +++  +    EE +  A+ +A+     +   +E+
Sbjct: 350 AGQAKRSASKPEKGGERFRQLKEEEKKKKLIKALPVEEVQPLASASASNDGSDVENNKEQ 409

Query: 427 EAS 429
           E +
Sbjct: 410 EVT 412

May be required for the insertion of some integral membrane proteins into the chloroplast thylakoid membrane. May play a role in inhibiting senescence.

Pisum sativum (taxid: 3888)

>sp|Q8LKI3|ALB32_CHLRE Inner membrane ALBINO3-like protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.2 PE=2 SV=1

 Score =  324 bits (830), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 151/238 (63%), Positives = 189/238 (79%), Gaps = 5/238 (2%)

Query: 97  ITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQ 156
           +    E VL+ L +G+ +  +PY+YGFAII LTV+VK ATFPLT+KQVES++++++L P+
Sbjct: 77  LAQFFEFVLQTLDEGLESAKIPYSYGFAIIALTVLVKVATFPLTQKQVESTLSLQALQPR 136

Query: 157 VKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLL 216
           VK +Q +YA D E +QLETARLYK AG+NPLAGC PTLATIPV+IGLY ALSN A EGLL
Sbjct: 137 VKELQAKYADDPENLQLETARLYKEAGVNPLAGCFPTLATIPVFIGLYNALSNAAKEGLL 196

Query: 217 TEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYIS 276
           TEGFFWIPSL GPTTI     G G+ WL PF +G PP+GW++  AYLV+PVLLV SQY S
Sbjct: 197 TEGFFWIPSLGGPTTI-----GGGLEWLVPFENGAPPVGWANAAAYLVMPVLLVASQYAS 251

Query: 277 VKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQ 334
            KII S  N DP+ + +QA+  FLPLMIG+F+L+VPSGL+LYWF NNLLST QQ++L+
Sbjct: 252 QKIISSQNNQDPSQQQAQAILKFLPLMIGWFSLNVPSGLTLYWFVNNLLSTGQQLYLK 309

Required for the insertion of some light-harvesting complexes (LHC) proteins into the chloroplast thylakoid membrane. Essential for the assembly and activity of LHC I and II. Its function is probably partly distinct from that of ALB3.1.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q8S339|ALB31_CHLRE Inner membrane ALBINO3-like protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.1 PE=3 SV=1

 Score =  293 bits (750), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 140/274 (51%), Positives = 204/274 (74%), Gaps = 3/274 (1%)

Query: 81  SDAVTTTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLT 140
           S A    ++   W++ + + +E VL  L++G+  LHVPY+YG++IILLT+IVK  T+PLT
Sbjct: 101 SAAGAAPQRAGGWVAPVADALEQVLYALQEGLDKLHVPYSYGYSIILLTLIVKLLTYPLT 160

Query: 141 KKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVW 200
           K+QVES+MA+++L P++  I++R+  D+++IQ ET+ LY+ AG+NPLAGCLPTLATIP++
Sbjct: 161 KQQVESAMAVQALKPRIDLIKDRFGEDKDKIQKETSVLYEQAGVNPLAGCLPTLATIPIF 220

Query: 201 IGLYRALSNVADEGLL-TEGFFWIPSLAGPTTIAARQNGSGISWLFPF-VDGHPPLGWSD 258
           IGL+ +L+NVA++GLL T+GF+++PSLAGPTT+A RQ+G G SWL+P   DG PP+GW D
Sbjct: 221 IGLFSSLTNVANDGLLDTQGFYFVPSLAGPTTMAMRQSGLGTSWLWPLGPDGAPPIGWED 280

Query: 259 TFAYLVLPVLLVVSQYISVKIIQSSQN-NDPNMKSSQALTNFLPLMIGYFALSVPSGLSL 317
             AYL LP+LLV  QY S  +     +  D N  + +AL  FLPLM+G+F+L+VP+GLSL
Sbjct: 281 AAAYLTLPLLLVAVQYASSSVTSPPIDPKDENANTQRALLVFLPLMVGWFSLNVPAGLSL 340

Query: 318 YWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIK 351
           Y+  N +LS+A Q++L+K GGA   M +   + K
Sbjct: 341 YYLANTVLSSAIQIYLKKLGGANVVMNELGPVTK 374

Required for the insertion of some light-harvesting complexes (LHC) proteins into the chloroplast thylakoid membrane. Essential for the assembly and activity of LHC I and II. Its function is probably partly distinct from that of ALB3.2.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|A0LLH3|YIDC_SYNFM Membrane protein insertase YidC OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=yidC PE=3 SV=1

 Score =  130 bits (326), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 136/283 (48%), Gaps = 37/283 (13%)

Query: 54  NSADGVKELLGVAERLLFTLADAAVSSSDAVTTTKQNSDWLSGITNVMETVLKVLKDGMS 113
           N     K    +  + L TLA A    + AV     +  W + I   +  VL        
Sbjct: 305 NETKSFKLRFYIGPKELSTLARAEHQLASAV-----DYGWFTFIAKPLVYVLDWF----- 354

Query: 114 TLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQL 173
                + +G AIILLT+++K   +PLT+K  +S   M+ + P++  I+E+Y GD+E++  
Sbjct: 355 -YRYTHNWGVAIILLTIVIKILFWPLTQKSYQSMQKMKKIQPKMTQIREKYKGDREKMNQ 413

Query: 174 ETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGF-FWIPSLAGPTTI 232
           E   LY+   +NP+ GCLP L  IPV+  LYR L+   +  L  E F  WI  L  P  +
Sbjct: 414 ELMGLYRTYKVNPMGGCLPMLLQIPVFFALYRMLNGAVE--LRHEPFMLWIDDLTAPDRL 471

Query: 233 AARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKS 292
                   I +  P++ G P           VL +L+ ++ +I  K+  S+   DP    
Sbjct: 472 P-------IGFDIPYLGGLP-----------VLTLLMGITMFIQQKMTPSA--GDPR--- 508

Query: 293 SQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQK 335
              +   +P+M   F ++ PSGL LYW  NN+LS AQQ W+ +
Sbjct: 509 QDQIMMIMPVMFTVFFVNFPSGLVLYWLVNNVLSIAQQYWVNR 551

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543)

>sp|Q9RNL5|YIDC_ZYMMO Membrane protein insertase YidC OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=yidC PE=3 SV=2

 Score =  125 bits (315), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 125/245 (51%), Gaps = 23/245 (9%)

Query: 92  DWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMR 151
           DW  G   ++E V     D +  LHV   YG AIIL+   ++A  FP+  KQ  S  +MR
Sbjct: 335 DW--GWFAIIEKVFFYYLDWL-FLHVG-NYGLAIILMVFTIRALIFPIANKQYASMASMR 390

Query: 152 SLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVA 211
            L P+++A++ERY  D+ R++ E   LY+   +NP AGCLP     P++I LY+ L  V 
Sbjct: 391 RLQPKMQAVRERYKNDEARMRQELVTLYQKEKVNPFAGCLPMFIQFPIFIALYKTLL-VT 449

Query: 212 DEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYL-VLPVLLV 270
            E        WI  L+ P  +           LF  +   PP      F  + VLP++L 
Sbjct: 450 IESRHQPFILWIKDLSAPDPLTPFN-------LFGLLHFTPP-----HFLMIGVLPIILG 497

Query: 271 VSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQ 330
           ++ ++  +   S Q  +P   + Q + +FLPL+   F   + +GL +Y+  NNL+S AQ 
Sbjct: 498 ITMWLQFR--ASPQQLEP---AQQQIMSFLPLISVIFMAPLAAGLQVYYIFNNLISLAQM 552

Query: 331 VWLQK 335
           +WLQ 
Sbjct: 553 MWLQH 557

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) (taxid: 264203)

>sp|O66103|YIDC_TREPA Membrane protein insertase YidC OS=Treponema pallidum (strain Nichols) GN=yidC PE=3 SV=2

 Score =  125 bits (313), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 82/240 (34%), Positives = 125/240 (52%), Gaps = 18/240 (7%)

Query: 96  GITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAP 155
           GI   +E +LK L     TL +P  +G AIIL+T+ +K   FPLTK+   +   M+ L P
Sbjct: 394 GILYPLEVLLKWLLRLFYTL-IP-NWGVAIILVTIAIKVLFFPLTKRSFIAMQKMQELQP 451

Query: 156 QVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGL 215
            ++ IQERY G+ ++I  E A+LY+ A  NPL+GCLPTL  +P+   +YR  +N  +   
Sbjct: 452 HMQRIQERYKGNTQKIHEEMAKLYREAQYNPLSGCLPTLVQMPIIFAMYRLFNNYFEFRG 511

Query: 216 LTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYI 275
                +WIP L+   ++          W  PF    P   W+      +LPVL VVSQ +
Sbjct: 512 AMFIPYWIPDLSLADSV----------WTLPF--ALPVTQWTQM---RMLPVLYVVSQIM 556

Query: 276 SVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQK 335
             K+ Q   + +    S   +T  +PL   +F    PSGL +YW   N ++  QQ+ +++
Sbjct: 557 FSKLTQVP-HTEQQKTSMTIMTYVMPLFFFFFFYDAPSGLLVYWTAMNGVTLVQQLVMKR 615

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Treponema pallidum (strain Nichols) (taxid: 243276)

>sp|Q04XE2|YIDC_LEPBL Membrane protein insertase YidC OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=yidC PE=3 SV=1

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 22/213 (10%)

Query: 121 YGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYK 180
           YG++II+  ++ K   +PL +KQ ES   M+ L+PQ+K I E++A D +  Q +T  LYK
Sbjct: 418 YGWSIIIFAILFKLVFYPLNQKQAESMKKMQELSPQLKTINEKFANDPKMRQQKTMELYK 477

Query: 181 LAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSG 240
              +NP+ GCLP +  IP++I LY A S+  D  L    F W+  L+ P  I        
Sbjct: 478 KNNVNPVGGCLPMVIQIPIFIALYTAFSDTID--LWNSPFLWVKDLSEPDVI-------- 527

Query: 241 ISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFL 300
             W  P +    P          +L +L+V +Q    ++  +S + DPN K    L   +
Sbjct: 528 --WTSPAI----PYFTQTGIGLNLLALLMVGTQIFQTRM--TSVSMDPNQK---MLMYVM 576

Query: 301 PLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWL 333
           P+M+ Y   ++PSG++LYW   N+LS  QQ W+
Sbjct: 577 PVMMLYIFWNMPSGVTLYWTFQNVLSIGQQ-WV 608

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) (taxid: 355276)

>sp|Q04W30|YIDC_LEPBJ Membrane protein insertase YidC OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=yidC PE=3 SV=1

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 22/213 (10%)

Query: 121 YGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYK 180
           YG++II+  ++ K   +PL +KQ ES   M+ L+PQ+K I E++A D +  Q +T  LYK
Sbjct: 418 YGWSIIIFAILFKLVFYPLNQKQAESMKKMQELSPQLKTINEKFANDPKMRQQKTMELYK 477

Query: 181 LAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSG 240
              +NP+ GCLP +  IP++I LY A S+  D  L    F W+  L+ P  I        
Sbjct: 478 KNNVNPVGGCLPMVIQIPIFIALYTAFSDTID--LWNSPFLWVKDLSEPDVI-------- 527

Query: 241 ISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFL 300
             W  P +    P          +L +L+V +Q    ++  +S + DPN K    L   +
Sbjct: 528 --WTSPAI----PYFTQTGIGLNLLALLMVGTQIFQTRM--TSVSMDPNQK---MLMYVM 576

Query: 301 PLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWL 333
           P+M+ Y   ++PSG++LYW   N+LS  QQ W+
Sbjct: 577 PVMMLYIFWNMPSGVTLYWTFQNVLSIGQQ-WV 608

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) (taxid: 355277)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
225424558	539	PREDICTED: ALBINO3-like protein 1, chlor	0.980	0.935	0.695	0.0
356569211	534	PREDICTED: ALBINO3-like protein 1, chlor	0.951	0.915	0.643	1e-172
449450415	506	PREDICTED: ALBINO3-like protein 1, chlor	0.873	0.887	0.662	1e-168
255547956	499	conserved hypothetical protein [Ricinus	0.906	0.933	0.657	1e-167
449494582	477	PREDICTED: ALBINO3-like protein 1, chlor	0.819	0.882	0.729	1e-165
343171890	458	ALBINO3-like protein, partial [Silene la	0.863	0.969	0.622	1e-162
343171892	458	ALBINO3-like protein, partial [Silene la	0.863	0.969	0.620	1e-160
356540205	543	PREDICTED: ALBINO3-like protein 1, chlor	0.943	0.893	0.644	1e-159
147772782	623	hypothetical protein VITISV_036218 [Viti	0.990	0.817	0.555	1e-157
240254150	499	ALBINO3-like protein 1 [Arabidopsis thal	0.929	0.957	0.592	1e-155

>gi|225424558|ref|XP_002282031.1| PREDICTED: ALBINO3-like protein 1, chloroplastic [Vitis vinifera] gi|296081405|emb|CBI16838.3| unnamed protein product [Vitis vinifera]

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/515 (69%), Positives = 412/515 (80%), Gaps = 11/515 (2%)

Query: 1   MATSLSIHQN-LILSPFPNRTDIQTPLFTRTHFGLKPFLRGSICVAKFGLRP-DPNSADG 58
           M+T  + H + L LSPFP+RT I+TP+   +HF   P  R S+ VA+FG RP   + AD 
Sbjct: 1   MSTFFAFHTSPLHLSPFPHRTQIRTPILHPSHFPGLPNRR-SLGVARFGFRPFHSDGADA 59

Query: 59  V-KELLGVAERLLFTLADAAVSSSDAVTTTKQNSDWLSGITNVMETVLKVLKDGMSTLHV 117
           V  +L G  E LL+T+ADAAVS+SD     KQ+ DWLSGITN METVLKVLK G+STLHV
Sbjct: 60  VIGDLFGRVETLLYTIADAAVSASDG----KQSGDWLSGITNYMETVLKVLKGGLSTLHV 115

Query: 118 PYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETAR 177
           PYAYGFAIILLTV+VKAATFPLTKKQVES+MAMRSL PQ+KAIQ+RYAGDQERIQLETAR
Sbjct: 116 PYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQIKAIQQRYAGDQERIQLETAR 175

Query: 178 LYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQN 237
           LYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSL+GPTTIAARQN
Sbjct: 176 LYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLSGPTTIAARQN 235

Query: 238 GSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALT 297
           GSGISWLFPFVDGHPPLGWSDT AYLVLP+LL+VSQYISV+I+QSSQ+NDP++K+SQALT
Sbjct: 236 GSGISWLFPFVDGHPPLGWSDTLAYLVLPMLLIVSQYISVQIMQSSQSNDPSLKTSQALT 295

Query: 298 NFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLD- 356
            FLPLMIGYFALSVPSGLSLYWFTNN+LSTAQQVWLQK GGA+ P+KQFSD I+ E L  
Sbjct: 296 KFLPLMIGYFALSVPSGLSLYWFTNNILSTAQQVWLQKLGGAQIPVKQFSDDIEKEELSQ 355

Query: 357 INKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQIREQEARRRQQREEEKRKAAEAAAKG 416
           I K V  ++STKKE +Q EKLT+EG RPGE+FKQI+EQEARRRQQREEEK KA EAAA  
Sbjct: 356 IQKPVFEINSTKKEPKQTEKLTSEGLRPGERFKQIKEQEARRRQQREEEKTKAEEAAANR 415

Query: 417 NQTINGEQEREASILGSAKGVQTDLVDKDDENFPSV-TGDNASNIGVAINGNISSHEFKE 475
             T NG  + EA+          DLVD  +++F S+ T  N+SNI V +N  +S+ + K+
Sbjct: 416 IPTTNGGYKNEANSTKREYRTGGDLVDGGNDSFQSLTTTHNSSNIEVVVNDELSNEDSKD 475

Query: 476 NQDTISVFRTGDNEVSANSEVDGRNEQQSQENLGK 510
            Q  + V RT  +E S N EVD R+EQ     L K
Sbjct: 476 EQK-MYVTRTESSENSVNYEVDVRDEQHINGKLEK 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569211|ref|XP_003552798.1| PREDICTED: ALBINO3-like protein 1, chloroplastic-like [Glycine max]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 334/519 (64%), Positives = 402/519 (77%), Gaps = 30/519 (5%)

Query: 1   MATSLSIHQNLILSPFPNRTDIQTPLFTRTHF----GLKPFLRGSICVAKFGLRP----D 52
           MA  L    N++ +P  NR+    P    +H       + FLRGS+ VA+FG +P    +
Sbjct: 1   MAALLPCAPNVVSAPLGNRSTCHFPHRPYSHAFSGSTARHFLRGSLTVARFGFQPGFLPE 60

Query: 53  PNSADGV-KELLGVAERLLFTLADAAVSSSDAV---TTTKQNSDWLSGITNVMETVLKVL 108
           P+ A+GV +EL G AE LL+T+ADAAVSSSD V   TT KQ++DWLSGI N METVLKVL
Sbjct: 61  PDEAEGVLRELFGRAEGLLYTIADAAVSSSDTVAASTTAKQSNDWLSGIANYMETVLKVL 120

Query: 109 KDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQ 168
           KDG+S LHVPYAYGFAIILLTV+VKAATFPLTKKQVES++AMR+L PQVKAIQ++YAGDQ
Sbjct: 121 KDGLSALHVPYAYGFAIILLTVLVKAATFPLTKKQVESALAMRTLQPQVKAIQQQYAGDQ 180

Query: 169 ERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAG 228
           ERIQLETARLYKLA INPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAG
Sbjct: 181 ERIQLETARLYKLANINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAG 240

Query: 229 PTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDP 288
           PTT+AARQNGSGISW+FPFVDGHPPLGWSDT AYLVLPVLL+VSQYISV+I+QSSQ NDP
Sbjct: 241 PTTVAARQNGSGISWIFPFVDGHPPLGWSDTLAYLVLPVLLIVSQYISVQIMQSSQPNDP 300

Query: 289 NMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQF-S 347
           NMKSSQALT  LPLMIGYFALSVPSGLSLYW TNN+LSTAQQVWLQK GGAK+P++Q   
Sbjct: 301 NMKSSQALTKVLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKLGGAKNPVRQVPD 360

Query: 348 DIIKDERLDINKSVPGLSSTK-KEARQAEKLTTEGPRPGEKFKQIREQEARRRQQREEEK 406
           DI+K++   + KS+  L+STK +EARQ+EK T+EGP+PGE+FK I+EQEARRRQ++EEE+
Sbjct: 361 DIMKNDLTQVQKSISKLNSTKAEEARQSEK-TSEGPQPGERFKLIKEQEARRRQRKEEER 419

Query: 407 R--KAAEAAAKGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNIGVAI 464
           +  +AA   AK ++T     E      G     ++  V  D +  PS++G         +
Sbjct: 420 KALEAAARKAKIDETFEKTVEEGNQTGGDLVVEKSRFVASDTD--PSISG--------VV 469

Query: 465 NGNISSHEFKENQDTISVFRTGDNEVSA---NSEVDGRN 500
           NGN  S + + NQ++ S+  T +N+ SA   N E++ +N
Sbjct: 470 NGNPLSKDLEGNQNSTSISETENNDGSAHFNNVEINEKN 508

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450415|ref|XP_004142958.1| PREDICTED: ALBINO3-like protein 1, chloroplastic-like [Cucumis sativus]

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 328/495 (66%), Positives = 381/495 (76%), Gaps = 46/495 (9%)

Query: 1   MATSLSIHQNLILSPFPNRTDIQTPLFTRTHF-GL---KPFLRGSICVAKFGLRP----D 52
           MA+      N + S FP+R     PLF    F GL   KPFLRGS+ VA+FG +P    D
Sbjct: 1   MASISPYRPNFVFSSFPSRVPNSNPLFHGVQFRGLSHHKPFLRGSLAVARFGFKPEFLPD 60

Query: 53  PNSADG-VKELLGVAERLLFTLADAAVSSS-DAVTTTKQNSDWLSGITNVMETVLKVLKD 110
           P++A+G V++L G AE  L+T+ADAAVS+S D VTT KQ  DW +GITN ME+VLK+LKD
Sbjct: 61  PDNAEGFVRDLFGKAESFLYTIADAAVSASPDNVTTVKQTDDWFTGITNYMESVLKILKD 120

Query: 111 GMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQER 170
           G+STLHVPYAYGFAIILLTV+VKAATFPLTKKQVES+MAMRSL PQVKA+Q+RYAGDQER
Sbjct: 121 GLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQVKAVQQRYAGDQER 180

Query: 171 IQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPT 230
           IQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVA+EGLLTEGFFWIPSLAGPT
Sbjct: 181 IQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPT 240

Query: 231 TIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNM 290
           TIA+RQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISV+I+QSSQNNDP+M
Sbjct: 241 TIASRQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVQIMQSSQNNDPSM 300

Query: 291 KSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSD-I 349
           KSSQA+T FL LMIGYFALSVPSGLSLYW TNN+LSTAQQ WLQK GGAK   KQF D I
Sbjct: 301 KSSQAITQFLLLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKAGGAKTLDKQFIDEI 360

Query: 350 IKDE--RLDINKSVPGLSSTKKE--ARQAEKLTTEGPRPGEKFKQIREQEARRRQQREEE 405
           +K E  ++ +    P L+S      ARQ EK T EG +PGE+FK+++EQEAR RQQREEE
Sbjct: 361 MKQEEKQVRVQSEAPKLNSISSSTVARQEEKPTAEGLKPGERFKRLKEQEARLRQQREEE 420

Query: 406 KRKAAEAAAKGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNIGVAIN 465
           +RKA E+A   + T+N                                GD ++ +GV +N
Sbjct: 421 ERKAEESAKAESLTVND-------------------------------GDKSATVGVVVN 449

Query: 466 GNISSHEFKENQDTI 480
           G++S  + KE+Q++I
Sbjct: 450 GSLSRQDVKEDQNSI 464

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547956|ref|XP_002515035.1| conserved hypothetical protein [Ricinus communis] gi|223546086|gb|EEF47589.1| conserved hypothetical protein [Ricinus communis]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 346/526 (65%), Positives = 396/526 (75%), Gaps = 60/526 (11%)

Query: 10  NLILSPFPN--RTDIQTPL-------FTRTHFGLKPFLRGSICVAKFGLRPD--PNSADG 58
           NL+LSPF N  +T    PL       F+ TH   KPFLRGS+ VA++G +P   P+  +G
Sbjct: 12  NLVLSPFHNQIKTTAFNPLLRPQFGSFSTTH---KPFLRGSVFVARYGFKPGLFPDPDEG 68

Query: 59  -VKELLGVAERLLFTLADAAVSSSDAVTTTKQNS---DWLSGITNVMETVLKVLKDGMST 114
            +K+L   AE LL+T+ADAAVSSSD + TT + +   DWLSGIT+ METVLKVL++G+S 
Sbjct: 69  LIKDLFTKAESLLYTIADAAVSSSDTINTTTKQTNNNDWLSGITSYMETVLKVLQNGLSG 128

Query: 115 LHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLE 174
           LHVPYAYGFAIILLTV+VKAATFPLTKKQVES+MAMRSL PQ+KAIQ++YAG+QE+IQLE
Sbjct: 129 LHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQIKAIQQQYAGNQEKIQLE 188

Query: 175 TARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAA 234
           TARLYKLAGINP AGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTT+AA
Sbjct: 189 TARLYKLAGINPFAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTVAA 248

Query: 235 RQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQ 294
           RQNGSGISWLFPFVDGHPPLGW DTFAYLVLPVLLVVSQYISV+I+QSSQNNDPNMKSSQ
Sbjct: 249 RQNGSGISWLFPFVDGHPPLGWYDTFAYLVLPVLLVVSQYISVQIMQSSQNNDPNMKSSQ 308

Query: 295 ALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDER 354
           A+T  LPLMIGYFALSVPSGLSLYW TNN+LSTAQQVWLQK GGAK+P+ Q  D ++ ++
Sbjct: 309 AITQLLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKLGGAKNPVSQ-EDHLRVQK 367

Query: 355 ----LDINKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQIREQEARRRQQREEEKRKAA 410
               L + KSV  L STK +A Q EKLT EG RPGE+FKQ++EQEA+R+QQREEEKRKA 
Sbjct: 368 SVDQLQVQKSVSELDSTKAKAIQVEKLTPEGLRPGERFKQLKEQEAKRKQQREEEKRKAE 427

Query: 411 EAAAKGNQTINGE---QEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNIGVAINGN 467
           EAAA  +QT NG     ERE        GV     D  D+ F      ++S  GV ING 
Sbjct: 428 EAAAISSQTANGSLHASERE-------NGVSMSGADVVDDKF----AHDSSAAGVIINGE 476

Query: 468 ISSHEFKENQDTISVFRTGDNEVSANSEVDGRNEQQSQENLGKVNL 513
           IS                       NSE  GR EQQS EN  KV +
Sbjct: 477 IS-----------------------NSESSGRVEQQSDENKQKVQI 499

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494582|ref|XP_004159588.1| PREDICTED: ALBINO3-like protein 1, chloroplastic-like [Cucumis sativus]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 318/436 (72%), Positives = 361/436 (82%), Gaps = 15/436 (3%)

Query: 1   MATSLSIHQNLILSPFPNRTDIQTPLFTRTHF-GL---KPFLRGSICVAKFGLRP----D 52
           MA+      N + S FP+R     PLF    F GL   KPFLRGS+ VA+FG +P    D
Sbjct: 1   MASISPYRPNFVFSSFPSRVPNSNPLFHGVQFRGLSHHKPFLRGSLAVARFGFKPEFLPD 60

Query: 53  PNSADG-VKELLGVAERLLFTLADAAVSSS-DAVTTTKQNSDWLSGITNVMETVLKVLKD 110
           P++A+G V++L G AE  L+T+ADAAVS+S D VTT KQ  DW +GITN ME+VLK+LKD
Sbjct: 61  PDNAEGFVRDLFGKAESFLYTIADAAVSASPDNVTTVKQTDDWFTGITNYMESVLKILKD 120

Query: 111 GMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQER 170
           G+STLHVPYAYGFAIILLTV+VKAATFPLTKKQVES+MAMRSL PQVKA+Q+RYAGDQER
Sbjct: 121 GLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQVKAVQQRYAGDQER 180

Query: 171 IQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPT 230
           IQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVA+EGLLTEGFFWIPSLAGPT
Sbjct: 181 IQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPT 240

Query: 231 TIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNM 290
           TIA+RQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISV+I+QSSQNNDP+M
Sbjct: 241 TIASRQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVQIMQSSQNNDPSM 300

Query: 291 KSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSD-I 349
           KSSQA+T FLPLMIGYFALSVPSGLSLYW TNN+LSTAQQ WLQK GGAK   KQF D I
Sbjct: 301 KSSQAITQFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKAGGAKTLDKQFIDEI 360

Query: 350 IKDE--RLDINKSVPGLSSTKKE--ARQAEKLTTEGPRPGEKFKQIREQEARRRQQREEE 405
           +K E  ++ +    P L+S      ARQ EK T EG +PGE+FK+++EQEAR RQQREEE
Sbjct: 361 MKQEEKQVRVQSEAPKLNSISSSTVARQEEKPTAEGLKPGERFKRLKEQEARLRQQREEE 420

Query: 406 KRKAAEAAAKGNQTIN 421
           +RKA E+A   + T+N
Sbjct: 421 ERKAEESAKAESLTVN 436

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343171890|gb|AEL98649.1| ALBINO3-like protein, partial [Silene latifolia]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 298/479 (62%), Positives = 369/479 (77%), Gaps = 35/479 (7%)

Query: 1   MATSLSIH-QNLILSPFPNRTD--IQTPLFTRTHFGLKPFLRGSICVAKFGLR-----PD 52
           M+T LS H  + +L P+P+ T    ++P F R     KP     + VAKFGL      PD
Sbjct: 1   MSTFLSPHLSHPLLYPYPSPTTRTHKSPFFHRFS-NPKPTSSAPLVVAKFGLLNSGQLPD 59

Query: 53  PNSADGVKELLGVAERLLFTLADAAVSSSDAV----TTTKQNSDWLSGITNVMETVLKVL 108
           P S   VKEL G AE +L+TLADAAV+++D V    T +KQN DWLSGIT+ ME++LKVL
Sbjct: 60  PES---VKELFGRAEGILYTLADAAVNNTDVVDASNTVSKQNGDWLSGITSSMESILKVL 116

Query: 109 KDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQ 168
           KDG++++HVPY+YGFAIILLT++VKAATFPL+KKQVES+MAMRSL PQ+KAIQ+RYAGDQ
Sbjct: 117 KDGLTSVHVPYSYGFAIILLTILVKAATFPLSKKQVESAMAMRSLQPQIKAIQKRYAGDQ 176

Query: 169 ERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAG 228
           ERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVA+EGLLTEGFFWIPSLAG
Sbjct: 177 ERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAG 236

Query: 229 PTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDP 288
           PTT+AAR +GSGISWLFPFVDGHPPLGWSDT AYLVLPVLL+VSQYIS++I+QSSQ +DP
Sbjct: 237 PTTVAARASGSGISWLFPFVDGHPPLGWSDTAAYLVLPVLLIVSQYISIQIMQSSQPDDP 296

Query: 289 NMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFS- 347
           N+KSSQA+T FLPLMIGYF+LSVPSGLSLYWFTNN+LST QQVWLQK GGAK+P+ Q S 
Sbjct: 297 NLKSSQAITKFLPLMIGYFSLSVPSGLSLYWFTNNILSTLQQVWLQKMGGAKNPVGQISG 356

Query: 348 DIIKDERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQIREQEARRRQQREEEKR 407
           D++K+E+    K+V    S + E      + + GPRPG++FK+++E+EARR++Q EEE  
Sbjct: 357 DLLKEEQPQPAKTVYEAKSIQAEV----DIPSTGPRPGDRFKKLKEEEARRKRQSEEENM 412

Query: 408 KAAEAAAKGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNIGVAING 466
           K               + ++ +++G   G  ++LV+  + +  + +    SN GVA NG
Sbjct: 413 KT--------------EVKQDNLVGPTNGSVSELVNGRNTDQSTTSVSATSNSGVAANG 457

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343171892|gb|AEL98650.1| ALBINO3-like protein, partial [Silene latifolia]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 297/479 (62%), Positives = 366/479 (76%), Gaps = 35/479 (7%)

Query: 1   MATSLSIH-QNLILSPFPNRTD--IQTPLFTRTHFGLKPFLRGSICVAKFGLR-----PD 52
           M+T LS H  + +L P+P+ T    ++P F R     KP     + VAKFGL      PD
Sbjct: 1   MSTFLSPHLSHPLLYPYPSPTTRTHKSPFFHRFS-NPKPTSSAPLVVAKFGLLNSGQLPD 59

Query: 53  PNSADGVKELLGVAERLLFTLADAAVSSSDAV----TTTKQNSDWLSGITNVMETVLKVL 108
           P S   VKEL G AE +L+TLADAAV+++D V    T +KQN DWLSGIT+ ME++LKVL
Sbjct: 60  PES---VKELFGRAEGILYTLADAAVNNTDVVDASNTVSKQNGDWLSGITSSMESILKVL 116

Query: 109 KDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQ 168
           KDG++++HVPY+YGFAIILLTV+VKAATFPL+KKQVES+MAMRSL PQ+KAIQ+RYAGDQ
Sbjct: 117 KDGLTSVHVPYSYGFAIILLTVLVKAATFPLSKKQVESAMAMRSLQPQIKAIQKRYAGDQ 176

Query: 169 ERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAG 228
           ERIQLETAR YKLAGINPLAGCLPTLATIPVWIGLYRALSNVA+EGLLTEGFFWIPSLAG
Sbjct: 177 ERIQLETARSYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAG 236

Query: 229 PTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDP 288
           PTT+AAR +GSGISWLFPFVDGHPPLGWSDT AYLVLPVLL+VSQYIS++I+QSSQ +DP
Sbjct: 237 PTTVAARASGSGISWLFPFVDGHPPLGWSDTAAYLVLPVLLIVSQYISIQIMQSSQPDDP 296

Query: 289 NMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFS- 347
           N+KSSQA+T FLPLMIGYF+LSVPSGLSLYWFTNN+LST QQVWLQK GGAK+P+ Q S 
Sbjct: 297 NLKSSQAITKFLPLMIGYFSLSVPSGLSLYWFTNNILSTLQQVWLQKMGGAKNPVGQISG 356

Query: 348 DIIKDERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQIREQEARRRQQREEEKR 407
           D++K+E+    K+V    S + E      + + GPR G +FK+++E+EARR++Q EEE  
Sbjct: 357 DLLKEEQPQPAKTVYEAKSIQAEV----DIPSTGPRQGNRFKKLKEEEARRKRQSEEENM 412

Query: 408 KAAEAAAKGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNIGVAING 466
           K               + ++ +++G   G  ++LV+  + +  + +    SN GVA NG
Sbjct: 413 KT--------------EVKQDNLVGPTNGSVSELVNGRNTDQSTTSVSATSNSGVAANG 457

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540205|ref|XP_003538580.1| PREDICTED: ALBINO3-like protein 1, chloroplastic-like [Glycine max]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 332/515 (64%), Positives = 394/515 (76%), Gaps = 30/515 (5%)

Query: 1   MATSLSIHQNLILSPF-PNRTDIQTPLFTRTHF----GLKPFLRGSICVAKFGLRPD--- 52
           MA  L    N++  P   NR+    P    +H       + FLRGS+ VA+FG +PD   
Sbjct: 1   MAALLPCAPNIVYGPLLGNRSTSHLPHRPHSHAFSGSTTRHFLRGSLTVARFGFKPDFLP 60

Query: 53  -PNSADGV-KELLGVAERLLFTLADAAVSSSDAVT--------TTKQNSDWLSGITNVME 102
            P+ A+GV +EL G AE LL+T+ADAAVSSS + +          KQ++DWLSGI N ME
Sbjct: 61  EPDEAEGVLRELFGRAEGLLYTIADAAVSSSSSSSSDTVAASYAAKQSNDWLSGIANYME 120

Query: 103 TVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQE 162
           TVLKVLKDG+S LHVPYAYGFAIILLTV+VKAATFPLTKKQVESS+AMR+L PQVKAIQ+
Sbjct: 121 TVLKVLKDGLSALHVPYAYGFAIILLTVLVKAATFPLTKKQVESSLAMRTLQPQVKAIQQ 180

Query: 163 RYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFW 222
           RYAGDQERIQLETARLYKLA INPLAGCLPTLATIPVWIGLYRALS+VADEGLLTEGFFW
Sbjct: 181 RYAGDQERIQLETARLYKLANINPLAGCLPTLATIPVWIGLYRALSSVADEGLLTEGFFW 240

Query: 223 IPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQS 282
           IPSLAGPTT+AARQNGSGISWLFPFVDGHPPLGWSDT AYLVLPVLLVVSQYISV+I+QS
Sbjct: 241 IPSLAGPTTVAARQNGSGISWLFPFVDGHPPLGWSDTLAYLVLPVLLVVSQYISVQIMQS 300

Query: 283 SQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDP 342
           SQ NDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYW TNN+LSTAQQVWLQK GGAK+P
Sbjct: 301 SQPNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKLGGAKNP 360

Query: 343 MKQF-SDIIKDERLDINKSVPGL-SSTKKEARQAEKLTTEGPRPGEKFKQIREQEA--RR 398
           ++Q   DI+K++   + KS+  L S+T +EAR +EK T+EGP+PGE+FK I+EQEA  ++
Sbjct: 361 VRQVPDDIMKNDLTQVQKSMSKLNSTTAEEARLSEK-TSEGPQPGERFKLIKEQEARRKQ 419

Query: 399 RQQREEEKRKAAEAAAKGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNAS 458
           +++ EEEKRKA EAAA+  + ++   E    +     G   DLV +      S+  D   
Sbjct: 420 QREEEEEKRKALEAAARETK-VDKTLEETVEVENQTGG---DLVVEKSR---SLASDTDP 472

Query: 459 NIGVAINGNISSHEFKENQDTISVFRTGDNEVSAN 493
           +I   +NGN  S + + NQ++ S   T +NE SA+
Sbjct: 473 SISGVVNGNPLSKDLEGNQNSTSTSETENNEGSAH 507

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772782|emb|CAN71675.1| hypothetical protein VITISV_036218 [Vitis vinifera]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 330/594 (55%), Positives = 391/594 (65%), Gaps = 85/594 (14%)

Query: 1   MATSLSIHQN-LILSPFPNRTDIQTPLFTRTHF--------------GLKPF-------- 37
           M+T  + H + L LSPFP+RT I+TP+   +HF              G +PF        
Sbjct: 1   MSTFFAFHTSPLHLSPFPHRTPIRTPILHPSHFPGLPNRRSLGVARFGFRPFHSDGADAV 60

Query: 38  ----------LRGSICVAKFGLRPDPNSADGVKELLGVAERLL-------------FTLA 74
                     L  +I  A         S D +  +    E +L             + + 
Sbjct: 61  IGDLFGRVETLLYTIADAAVSASDGKQSGDWLSGITNYMETVLKNVLKPWVDKLIWYEMP 120

Query: 75  DAAVSSS--------DAVTTTKQNSD----WLSGITNVMETVLKVLKDGMSTLHVPYAYG 122
           + +++            +T  +Q  D     +  I       L+VLK G+STLHVPYAYG
Sbjct: 121 ELSITQFRLFGLDVLHCMTWKRQGYDTSRVCIVTIEKRKFCXLEVLKGGLSTLHVPYAYG 180

Query: 123 FAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLA 182
           FAIILLTV+VKAATFPLTKKQVES+MAMRSL PQ+KAIQ+RYAGDQERIQLETARLYKLA
Sbjct: 181 FAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQIKAIQQRYAGDQERIQLETARLYKLA 240

Query: 183 GINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGIS 242
           GINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSL+GPTTIAARQNGSGIS
Sbjct: 241 GINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLSGPTTIAARQNGSGIS 300

Query: 243 WLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQS-------------------- 282
           WLFPFVDGHPPLGWSDT AYLVLP+LL+VSQYISV+I+QS                    
Sbjct: 301 WLFPFVDGHPPLGWSDTLAYLVLPMLLIVSQYISVQIMQSSQQWELLGHLKGVPKLELET 360

Query: 283 ----SQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGG 338
               SQ+NDP++K+SQALT FLPLMIGYFALSVPSGLSLYWFTNN+LSTAQQVWLQK GG
Sbjct: 361 MIGLSQSNDPSLKTSQALTKFLPLMIGYFALSVPSGLSLYWFTNNILSTAQQVWLQKLGG 420

Query: 339 AKDPMKQFSDIIKDERLD-INKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQIREQEAR 397
           A+ P+KQFSD I+ E L  I K V  ++STKKE +Q EKLT+EG RPGE+FKQI+EQEAR
Sbjct: 421 AQIPVKQFSDDIEKEELSQIQKPVFEINSTKKEPKQTEKLTSEGLRPGERFKQIKEQEAR 480

Query: 398 RRQQREEEKRKAAEAAAKGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSV-TGDN 456
           RRQQREEEK KA EAAA    T NG  + EA+          DLVD  +++F S+ T  N
Sbjct: 481 RRQQREEEKTKAEEAAANRIPTTNGGYKNEANSTKREYRTGGDLVDGGNDSFQSLTTTHN 540

Query: 457 ASNIGVAINGNISSHEFKENQDTISVFRTGDNEVSANSEVDGRNEQQSQENLGK 510
           +S I V +N  +S+ + K+ Q  + V RT  +E S N EVD R+EQ     L K
Sbjct: 541 SSXIEVVVNDELSNEDSKDEQK-MYVTRTESSENSVNYEVDVRDEQHINGKLEK 593

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254150|ref|NP_173858.5| ALBINO3-like protein 1 [Arabidopsis thaliana] gi|223590242|sp|Q9FYL3.3|ALB31_ARATH RecName: Full=ALBINO3-like protein 1, chloroplastic; AltName: Full=Arabidopsis thaliana envelope membrane integrase; AltName: Full=Protein ALBINA 4; Short=Ath4; AltName: Full=Protein ARTEMIS; Flags: Precursor gi|91680591|emb|CAJ45566.1| Alb protein [Arabidopsis thaliana] gi|332192418|gb|AEE30539.1| ALBINO3-like protein 1 [Arabidopsis thaliana]

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 308/520 (59%), Positives = 384/520 (73%), Gaps = 42/520 (8%)

Query: 1   MATSLSIH-QNLILSPFPNRTDIQTPLFTRTHFGLKPFL---RGSICVAKFGLRPDPNSA 56
           M++++S+   +LILS F     +Q   F R+ F   P     R    VA+ G RPD  S 
Sbjct: 1   MSSTISLKPTHLILSSFSTGKVLQ---FRRSRFSHTPSSSSSRYRTLVAQLGFRPD--SF 55

Query: 57  DGVKELLGVAERLLFTLADAAVSSSD-----AVTTTK--QNSDWLSGITNVMETVLKVLK 109
           D +K+    AE LL+T+ADAAVSSS+     A TTTK  Q++DW SGI N MET+LKVLK
Sbjct: 56  DFIKDH---AENLLYTIADAAVSSSETFESVAGTTTKTTQSNDWFSGIANYMETILKVLK 112

Query: 110 DGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQE 169
           DG+ST+HVPY+YGFAIILLTV+VKAATFPLTKKQVES+MAM+SL PQ+KAIQERYAGDQE
Sbjct: 113 DGLSTVHVPYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQE 172

Query: 170 RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP 229
           +IQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP
Sbjct: 173 KIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP 232

Query: 230 TTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPN 289
           TT+AARQNGSGISWLFPF++GHPPLGW DT AYLVLP+LLV SQY+S++I+QSSQ+NDP 
Sbjct: 233 TTVAARQNGSGISWLFPFIEGHPPLGWPDTLAYLVLPLLLVFSQYLSIQIMQSSQSNDPA 292

Query: 290 MKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDI 349
           MKSSQA+T  LPLMIGYFALSVPSGLSLYW TNN+LSTAQQVWLQK+GGAK+P+++F+++
Sbjct: 293 MKSSQAVTKLLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKYGGAKNPVEKFTNL 352

Query: 350 I----KDERLDINKSVPGLSSTKKE-----ARQAEKLTTEGPRPGEKFKQIREQEARRRQ 400
           +    K ++++ + S P +  +  E      +  EK+T E P+PGE+F+ ++EQEA+RR 
Sbjct: 353 VTKEDKTQQIEKSFSEPLVQKSVSELKIPREKGGEKVTPECPKPGERFRLLKEQEAKRR- 411

Query: 401 QREEEKRKAAEAAAKGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNI 460
            RE+E+R+ AEAA     T    ++ E S         T +V +DD+       D  S+ 
Sbjct: 412 -REKEERQKAEAALSNQNTDKAHEQDEKS--------DTAIVAEDDKKTELSAVDETSDG 462

Query: 461 GVAINGNISSHEFKENQDTISVFRTG-DNEVSANSEVDGR 499
            VA+NG  S    ++++ T   F  G D E   + E + R
Sbjct: 463 TVAVNGKPS---IQKDETTNGTFGIGHDTEQQHSHETEKR 499

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
TAIR|locus:2809836	499	ALB4 "AT1G24490" [Arabidopsis	0.929	0.957	0.544	1.9e-131
TAIR|locus:2053230	462	ALB3 "ALBINO 3" [Arabidopsis t	0.605	0.673	0.632	2e-104
UNIPROTKB|Q3AG58	223	CHY_0004 "Sporulation associat	0.219	0.506	0.377	6.8e-31
TIGR_CMR|CHY_0004	223	CHY_0004 "sporulation associat	0.219	0.506	0.377	6.8e-31
UNIPROTKB|Q71VQ8	287	yidC1 "Membrane protein insert	0.208	0.372	0.377	2.7e-27
UNIPROTKB|Q81XH4	260	yidC1 "Membrane protein insert	0.204	0.403	0.353	1.1e-25
TIGR_CMR|BA_5263	260	BA_5263 "stage III sporulation	0.204	0.403	0.353	1.1e-25
UNIPROTKB|Q5HUK1	530	yidC "Membrane protein inserta	0.239	0.232	0.384	5e-25
TIGR_CMR|CJE_1038	530	CJE_1038 "inner membrane prote	0.239	0.232	0.384	5e-25
UNIPROTKB|Q81JH1	255	yidC2 "Membrane protein insert	0.194	0.392	0.358	1.4e-23

TAIR|locus:2809836 ALB4 "AT1G24490" [Arabidopsis thaliana (taxid:3702)]

 Score = 1289 (458.8 bits), Expect = 1.9e-131, P = 1.9e-131
 Identities = 283/520 (54%), Positives = 351/520 (67%)

Query:     1 MATSLSIHQ-NLILSPFPNRTDIQTPLFTRTHFGLKPFLRGS---ICVAKFGLRPDPNSA 56
             M++++S+   +LILS F     +Q   F R+ F   P    S     VA+ G RPD  S 
Sbjct:     1 MSSTISLKPTHLILSSFSTGKVLQ---FRRSRFSHTPSSSSSRYRTLVAQLGFRPD--SF 55

Query:    57 DGVKELLGVAERLLFTLXXXXXXXXXX-------XXXXKQNSDWLSGITNVMETVLKVLK 109
             D +K+    AE LL+T+                      Q++DW SGI N MET+LKVLK
Sbjct:    56 DFIKDH---AENLLYTIADAAVSSSETFESVAGTTTKTTQSNDWFSGIANYMETILKVLK 112

Query:   110 DGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQE 169
             DG+ST+HVPY+YGFAIILLTV+VKAATFPLTKKQVES+MAM+SL PQ+KAIQERYAGDQE
Sbjct:   113 DGLSTVHVPYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQE 172

Query:   170 RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP 229
             +IQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP
Sbjct:   173 KIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP 232

Query:   230 TTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPN 289
             TT+AARQNGSGISWLFPF++GHPPLGW DT AYLVLP+LLV SQY+S++I+QSSQ+NDP 
Sbjct:   233 TTVAARQNGSGISWLFPFIEGHPPLGWPDTLAYLVLPLLLVFSQYLSIQIMQSSQSNDPA 292

Query:   290 MKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDI 349
             MKSSQA+T  LPLMIGYFALSVPSGLSLYW TNN+LSTAQQVWLQK+GGAK+P+++F+++
Sbjct:   293 MKSSQAVTKLLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKYGGAKNPVEKFTNL 352

Query:   350 I--KDERLDINKSV--PGLSSTKKEAR-----QAEKLTTEGPRPGEKFKQIXXXXXXXXX 400
             +  +D+   I KS   P +  +  E +       EK+T E P+PGE+F+ +         
Sbjct:   353 VTKEDKTQQIEKSFSEPLVQKSVSELKIPREKGGEKVTPECPKPGERFRLLKEQEAKRRR 412

Query:   401 XXXXXXXXXXXXXXXGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNI 460
                             NQ  +   E++           T +V +DD+       D  S+ 
Sbjct:   413 EKEERQKAEAALS---NQNTDKAHEQDEKS-------DTAIVAEDDKKTELSAVDETSDG 462

Query:   461 GVAINGNISSHEFKENQDTISVFRTG-DNEVSANSEVDGR 499
              VA+NG  S    ++++ T   F  G D E   + E + R
Sbjct:   463 TVAVNGKPS---IQKDETTNGTFGIGHDTEQQHSHETEKR 499

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

TAIR|locus:2053230 ALB3 "ALBINO 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
 Identities = 201/318 (63%), Positives = 251/318 (78%)

Query:    66 AERLLFTLXXXX-----XXXXXXXXXXKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYA 120
             AE LL+T+                   +++  W   I++ ME VLK+LKDG+S +HVPYA
Sbjct:    80 AESLLYTIADAAVVGADSVVTTDSSAVQKSGGWFGFISDAMELVLKILKDGLSAVHVPYA 139

Query:   121 YGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYK 180
             YGFAIILLT+IVKAAT+PLTK+QVES++AM++L P++KAIQ+RYAG+QERIQLET+RLYK
Sbjct:   140 YGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYK 199

Query:   181 LAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSG 240
              AG+NPLAGCLPTLATIPVWIGLY+ALSNVA+EGL TEGFFWIPSL GPT+IAARQ+GSG
Sbjct:   200 QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTSIAARQSGSG 259

Query:   241 ISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFL 300
             ISWLFPFVDGHPPLGW DT AYLVLPVLL+ SQY+S++I++  Q +DP  K++  +  FL
Sbjct:   260 ISWLFPFVDGHPPLGWYDTVAYLVLPVLLIASQYVSMEIMKPPQTDDPAQKNTLLVFKFL 319

Query:   301 PLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQ-FSDIIKDERLDINK 359
             PLMIGYFALSVPSGLS+YW TNN+LSTAQQV+L+K GGAK  M +  S II   R   + 
Sbjct:   320 PLMIGYFALSVPSGLSIYWLTNNVLSTAQQVYLRKLGGAKPNMDENASKIISAGRAKRSI 379

Query:   360 SVPGLSSTK-KEARQAEK 376
             + P  +  + ++ ++ EK
Sbjct:   380 AQPDDAGERFRQLKEQEK 397

GO:0005886 "plasma membrane" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0090342 "regulation of cell aging" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q3AG58 CHY_0004 "Sporulation associated-membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 224 (83.9 bits), Expect = 6.8e-31, Sum P(2) = 6.8e-31
 Identities = 43/114 (37%), Positives = 70/114 (61%)

Query:   114 TLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQL 173
             ++ +P +Y  AII+LT+++K   +PL   Q++S   M+ L P+++ IQ++Y  D ++ Q 
Sbjct:    21 SIGIP-SYALAIIMLTILIKIILYPLNHAQMKSMKVMQELQPKMQEIQKKYKNDPQKQQQ 79

Query:   174 ETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLA 227
                 LYK  G+NP++GCLP L  +P+ I LYRAL N          FFWI +++
Sbjct:    80 ALMELYKEYGVNPMSGCLPMLIQLPILIALYRALYNFKYLNPAHAKFFWIANIS 133

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|CHY_0004 CHY_0004 "sporulation associated-membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 224 (83.9 bits), Expect = 6.8e-31, Sum P(2) = 6.8e-31
 Identities = 43/114 (37%), Positives = 70/114 (61%)

Query:   114 TLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQL 173
             ++ +P +Y  AII+LT+++K   +PL   Q++S   M+ L P+++ IQ++Y  D ++ Q 
Sbjct:    21 SIGIP-SYALAIIMLTILIKIILYPLNHAQMKSMKVMQELQPKMQEIQKKYKNDPQKQQQ 79

Query:   174 ETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLA 227
                 LYK  G+NP++GCLP L  +P+ I LYRAL N          FFWI +++
Sbjct:    80 ALMELYKEYGVNPMSGCLPMLIQLPILIALYRALYNFKYLNPAHAKFFWIANIS 133

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0030436 "asexual sporulation" evidence=ISS

UNIPROTKB|Q71VQ8 yidC1 "Membrane protein insertase YidC 1" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 218 (81.8 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
 Identities = 43/114 (37%), Positives = 72/114 (63%)

Query:   120 AYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAG-DQE---RIQLET 175
             +Y   II++T++++    PL  KQ++S  AM +L P++K +QE+Y+  D E   ++Q ET
Sbjct:    64 SYAVGIIVVTILIRLLIMPLMIKQLKSQKAMTNLQPKIKELQEKYSSKDNETKQKLQQET 123

Query:   176 ARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP 229
              RLY+   +NP+ GCLP L  +P+ +G Y+A+S  A+  + T+ F W+  L  P
Sbjct:   124 MRLYQENSVNPMMGCLPLLIQMPILLGFYQAISRTAE--IKTDSFLWM-QLGNP 174

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81XH4 yidC1 "Membrane protein insertase YidC 1" [Bacillus anthracis (taxid:1392)]

 Score = 191 (72.3 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
 Identities = 41/116 (35%), Positives = 68/116 (58%)

Query:   116 HVPYA-YGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGD------- 167
             H+P A +G AII++T+++++A  PL   Q  S   M+ + P+++ ++++Y GD       
Sbjct:    55 HIPGASFGIAIIIMTLVIRSAMIPLAVSQYRSQAKMKKMQPELQKLKQKY-GDVSKDLEK 113

Query:   168 QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWI 223
             Q++ Q E + L K  G NPLAGC P L  +P++  LY A+S    E + T  F W+
Sbjct:   114 QKQYQKEMSELMKSGGWNPLAGCWPLLIQMPIFSALYYAISRT--EEIRTSTFLWV 167

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|BA_5263 BA_5263 "stage III sporulation protein J" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 191 (72.3 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
 Identities = 41/116 (35%), Positives = 68/116 (58%)

Query:   116 HVPYA-YGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGD------- 167
             H+P A +G AII++T+++++A  PL   Q  S   M+ + P+++ ++++Y GD       
Sbjct:    55 HIPGASFGIAIIIMTLVIRSAMIPLAVSQYRSQAKMKKMQPELQKLKQKY-GDVSKDLEK 113

Query:   168 QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWI 223
             Q++ Q E + L K  G NPLAGC P L  +P++  LY A+S    E + T  F W+
Sbjct:   114 QKQYQKEMSELMKSGGWNPLAGCWPLLIQMPIFSALYYAISRT--EEIRTSTFLWV 167

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0030435 "sporulation resulting in formation of a cellular spore" evidence=ISS

UNIPROTKB|Q5HUK1 yidC "Membrane protein insertase YidC" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 227 (85.0 bits), Expect = 5.0e-25, Sum P(2) = 5.0e-25
 Identities = 48/125 (38%), Positives = 76/125 (60%)

Query:   104 VLKVLKDGMSTLHVPYA-YGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQE 162
             + K + + ++ LH     +G+AI+++T+IV+   FPLT K + S   ++ LAP++K I+E
Sbjct:   318 IAKPMFEFLNFLHQYIGNWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRE 377

Query:   163 RYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFW 222
             RY GD +++ +    LYK  G NP++GCLP L  IP++  +YR L N A E       FW
Sbjct:   378 RYKGDPQKMNMHMMELYKKHGANPMSGCLPILLQIPIFFAIYRVLLN-AIELKAAPWAFW 436

Query:   223 IPSLA 227
             I  L+
Sbjct:   437 IHDLS 441

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CJE_1038 CJE_1038 "inner membrane protein, 60 kDa" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 227 (85.0 bits), Expect = 5.0e-25, Sum P(2) = 5.0e-25
 Identities = 48/125 (38%), Positives = 76/125 (60%)

Query:   104 VLKVLKDGMSTLHVPYA-YGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQE 162
             + K + + ++ LH     +G+AI+++T+IV+   FPLT K + S   ++ LAP++K I+E
Sbjct:   318 IAKPMFEFLNFLHQYIGNWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRE 377

Query:   163 RYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFW 222
             RY GD +++ +    LYK  G NP++GCLP L  IP++  +YR L N A E       FW
Sbjct:   378 RYKGDPQKMNMHMMELYKKHGANPMSGCLPILLQIPIFFAIYRVLLN-AIELKAAPWAFW 436

Query:   223 IPSLA 227
             I  L+
Sbjct:   437 IHDLS 441

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q81JH1 yidC2 "Membrane protein insertase YidC 2" [Bacillus anthracis (taxid:1392)]

 Score = 192 (72.6 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
 Identities = 38/106 (35%), Positives = 64/106 (60%)

Query:   121 YGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGD----QERIQLETA 176
             YG AI++ T+I++ A  PL  KQ +S+ AM++L P++  ++E+Y+      Q+++Q E  
Sbjct:    59 YGLAIVVTTLIIRFALLPLMIKQTKSTKAMQALQPEMVKLKEKYSSKDQATQQKLQQEMM 118

Query:   177 RLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFW 222
             +LY+  G+NPLAGCLP    +P+    Y A+   ++    T  F W
Sbjct:   119 QLYQKNGVNPLAGCLPIFVQMPILFAFYHAIMRTSEISKHT--FLW 162

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FYL3	ALB31_ARATH	No assigned EC number	0.5923	0.9299	0.9579	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	514
pfam02096	193	pfam02096, 60KD_IMP, 60Kd inner membrane protein	4e-69
TIGR03592	181	TIGR03592, yidC_oxa1_cterm, membrane protein inser	1e-65
PRK01318	521	PRK01318, PRK01318, membrane protein insertase; Pr	2e-51
COG0706	314	COG0706, YidC, Preprotein translocase subunit YidC	4e-45
PRK00145	223	PRK00145, PRK00145, putative inner membrane protei	4e-38
PRK01622	256	PRK01622, PRK01622, OxaA-like protein precursor; V	3e-33
PRK01315	329	PRK01315, PRK01315, putative inner membrane protei	1e-32
PRK02944	255	PRK02944, PRK02944, OxaA-like protein precursor; V	5e-30
PRK01001	795	PRK01001, PRK01001, putative inner membrane protei	7e-26
PRK03449	304	PRK03449, PRK03449, putative inner membrane protei	1e-24
PRK02654	375	PRK02654, PRK02654, putative inner membrane protei	5e-17
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	3e-16
PRK02201	357	PRK02201, PRK02201, putative inner membrane protei	3e-15
PRK02463	307	PRK02463, PRK02463, OxaA-like protein precursor; P	9e-14
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-05
MTH00207	572	MTH00207, ND5, NADH dehydrogenase subunit 5; Provi	9e-04

>gnl|CDD|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein

 Score =  219 bits (560), Expect = 4e-69
 Identities = 79/218 (36%), Positives = 117/218 (53%), Gaps = 31/218 (14%)

Query: 121 YGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYK 180
           +G AIILLT++V+    PLT KQ +S   M+ L P++K IQE+Y  D +++Q E  +LYK
Sbjct: 3   WGLAIILLTILVRLLLLPLTLKQYKSMAKMQELQPEIKEIQEKYKDDPQKLQQEMMKLYK 62

Query: 181 LAGINPLAGCLPTLATIPVWIGLYRALSNVAD-EGLLTEGFFWIPSLAGPTTIAARQNGS 239
             G+NPLAGCLP L  +P++I LYRAL N+A+   L T GF WI  L+ P          
Sbjct: 63  EHGVNPLAGCLPMLIQLPIFIALYRALRNMAELRSLETAGFLWIKDLSAP---------- 112

Query: 240 GISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTN- 298
                    D            Y +LP+L  ++ ++  K+  S    D    +   +   
Sbjct: 113 ---------DPP----------YFILPILAGLTMFLQQKLSPSQDPPDLQQSAQMKIMMY 153

Query: 299 FLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKF 336
            +PL+  +F L+ P+GL LYW  +NL S  QQ+ ++K 
Sbjct: 154 IMPLIFLFFFLNFPAGLVLYWIVSNLFSLVQQLIIRKP 191

Length = 193

>gnl|CDD|234272 TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain

 Score =  210 bits (536), Expect = 1e-65
 Identities = 73/215 (33%), Positives = 109/215 (50%), Gaps = 35/215 (16%)

Query: 121 YGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYK 180
           +G AIILLT+IV+    PLT KQ +S   M+ L P++K IQE+Y  D +++Q E  +LYK
Sbjct: 2   WGLAIILLTIIVRLILLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYK 61

Query: 181 LAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSG 240
             G+NPL GCLP L  +P++I LY+ L       L    F WI  L+ P           
Sbjct: 62  EEGVNPLGGCLPLLIQMPIFIALYQVLRRS--IELRHAPFLWIQDLSAP----------- 108

Query: 241 ISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFL 300
                   D            Y +LP+L+ V+ ++  K+  S   +    K    +   +
Sbjct: 109 --------D-----------PYYILPILMGVTMFLQQKLSPSGPPDPAQQK---IMMYIM 146

Query: 301 PLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQK 335
           P+M  +F LS P+GL LYW  +NL +  QQ+ + +
Sbjct: 147 PVMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR 181

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here [Protein fate, Protein and peptide secretion and trafficking]. Length = 181

>gnl|CDD|234942 PRK01318, PRK01318, membrane protein insertase; Provisional

 Score =  182 bits (464), Expect = 2e-51
 Identities = 74/228 (32%), Positives = 110/228 (48%), Gaps = 37/228 (16%)

Query: 121 YGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYK 180
           +G+AIILLT+IVK   FPLT K   S   M+ L P+++ ++E+Y  D +++Q E   LYK
Sbjct: 323 WGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQKMQQEMMELYK 382

Query: 181 LAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFF-WIP--SLAGPTTIAARQN 237
              +NPL GCLP L  IP++  LY+ L  V+ E L    F  WI   S   P  I     
Sbjct: 383 KEKVNPLGGCLPILIQIPIFFALYKVL-LVSIE-LRHAPFIGWIHDLSAPDPYFI----- 435

Query: 238 GSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALT 297
                                     +LP+L+ ++ ++  K+  +    DP       + 
Sbjct: 436 ----------------------LHIGLLPILMGITMFLQQKL--NPTPTDPMQ---AKIM 468

Query: 298 NFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQ 345
            F+PL+  +F LS P+GL LYW  NNLL+  QQ  + +    K  +  
Sbjct: 469 KFMPLIFTFFFLSFPAGLVLYWIVNNLLTIIQQYLINRRLEKKKLLAA 516

Length = 521

>gnl|CDD|223778 COG0706, YidC, Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

 Score =  160 bits (407), Expect = 4e-45
 Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 33/218 (15%)

Query: 121 YGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAG-DQERIQLETARLY 179
           +G +IILLT+IV+   FPL++K   S   M+ L P++K IQE+Y G D+++ Q E  +LY
Sbjct: 110 WGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDKQKQQQEMMKLY 169

Query: 180 KLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFF-WIPSLAGPTTIAARQNG 238
           K   +NPLAGCLP L  +P++I LY  L +     L    F  WI  L+ P         
Sbjct: 170 KKHKVNPLAGCLPLLIQMPIFIALYYVLRSTV--ELRGAPFLGWITDLSLP--------- 218

Query: 239 SGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTN 298
                              D    L+LP+L  V+ ++  K+   + +   +    + +  
Sbjct: 219 -------------------DPDYILLLPILAGVTMFLQQKLSPRNLSTPQD-PQQKKMMY 258

Query: 299 FLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKF 336
            +P++  +F  + P+GL LYW  +NL S  QQ  L K 
Sbjct: 259 IMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQYILNKP 296

Length = 314

>gnl|CDD|234665 PRK00145, PRK00145, putative inner membrane protein translocase component YidC; Provisional

 Score =  139 bits (351), Expect = 4e-38
 Identities = 65/249 (26%), Positives = 113/249 (45%), Gaps = 36/249 (14%)

Query: 94  LSGITNVMETVLKVLKDGMSTL--HVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMR 151
           +  + N      K +   +S++  +  ++YG AIIL+T+I++    PL  KQ +SS+ M 
Sbjct: 2   MRYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMN 61

Query: 152 SLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVA 211
            + P++K +Q +Y  D +++Q E  +LYK  G+NPL GCLP L   P+ I LY   +N+ 
Sbjct: 62  EIQPEIKKLQAKYKNDPQKLQQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNL- 120

Query: 212 DEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVV 271
             G+    F WI  LA P                                  +LP+L   
Sbjct: 121 -TGINGVSFLWIKDLAKPDI------------------------------TWILPILSGA 149

Query: 272 SQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQV 331
           + Y+S  ++  + ++       + +   + + +G  +    S L LYW   NL+   Q  
Sbjct: 150 TTYLSGYLMTKADSSQA--GQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTY 207

Query: 332 WLQKFGGAK 340
           +++K    K
Sbjct: 208 FIKKLELKK 216

Length = 223

>gnl|CDD|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated

 Score =  126 bits (319), Expect = 3e-33
 Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 45/226 (19%)

Query: 121 YGFAIILLTVIVKAATFPLTKKQVESSMAMRS----LAPQVKAIQERY-----AGDQERI 171
           YG AII++T+I+++   PL   Q +S   M+     + P++  IQ +         Q+  
Sbjct: 60  YGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKVTKDLEKQKEY 119

Query: 172 QLETARLYKLAGINPLA-GCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPT 230
           Q E   LYK   INPLA GCLP L  +P+    Y A+     E + +  F W        
Sbjct: 120 QKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRT--EEIASHSFLWF------- 170

Query: 231 TIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNM 290
                                  LG +D     +LP++  ++ +I +K+ QS+  +   +
Sbjct: 171 ----------------------NLGHAD----HILPIIAGLTYFIQMKVSQSNGTSPEQV 204

Query: 291 KSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKF 336
           +  +     +P MI + + + PS L LYW T  L    Q + L+K 
Sbjct: 205 QMLKIQGIMMPAMILFMSFAAPSALVLYWITGGLFLMGQTIVLRKV 250

Length = 256

>gnl|CDD|234941 PRK01315, PRK01315, putative inner membrane protein translocase component YidC; Provisional

 Score =  126 bits (319), Expect = 1e-32
 Identities = 84/313 (26%), Positives = 135/313 (43%), Gaps = 42/313 (13%)

Query: 120 AYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLY 179
            +  +I+ L ++++A   PL  KQ++S   M+ + P++K IQE+Y GD+ER+  E  +LY
Sbjct: 41  TWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKGDRERMSQEMMKLY 100

Query: 180 KLAGINPLAGCLPTLATIPVWIGLYRALSNVADE----GLLTEG---------FFWIPSL 226
           K  G NPL+ CLP L  +P++  LYR L + A      G +             F  P L
Sbjct: 101 KETGTNPLSSCLPLLLQMPIFFALYRVLDSAASRGDGIGPINPPLLESFRHAHIFGAP-L 159

Query: 227 AGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYIS-----VKIIQ 281
           A  T + A   G+    +                   VL +L+  SQ+I+      K + 
Sbjct: 160 AA-TFLQALNAGNTAVQVVA----------------AVLIILMSASQFITQLQLMTKNMP 202

Query: 282 SSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKD 341
                 P  +  + L    PLM     ++ P G+  YW T+N+ +  QQ ++ +      
Sbjct: 203 PEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLFYWLTSNVWTMGQQFYVIRNNPTPG 262

Query: 342 PMKQFSDIIKDERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQIREQEARRRQQ 401
                  I ++ERL       G S  K  A +     T   R   K + ++ Q+  +RQ 
Sbjct: 263 SPAA---IAREERLAKKGKDHGESEGKVVAPEGAVAQTTEVREQTKRQTVQRQQP-KRQS 318

Query: 402 REEEKRKAAEAAA 414
           R   KR+   AA 
Sbjct: 319 R--AKRQKGGAAT 329

Length = 329

>gnl|CDD|179508 PRK02944, PRK02944, OxaA-like protein precursor; Validated

 Score =  117 bits (295), Expect = 5e-30
 Identities = 63/232 (27%), Positives = 112/232 (48%), Gaps = 48/232 (20%)

Query: 121 YGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERY----AGDQERIQLETA 176
           YG AII++T++++    PL  KQ +S+ AM++L P+++ ++E+Y       Q+++Q E  
Sbjct: 59  YGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSKDQATQQKLQQEMM 118

Query: 177 RLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQ 236
           +L++  G+NPLAGCLP    +P+ I  Y A+   ++       F W              
Sbjct: 119 QLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSEIS--KHSFLW-------------- 162

Query: 237 NGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQS-SQNNDPNMKSSQA 295
                     F  G           Y +LP++  ++ +I  K++ + +   +P M     
Sbjct: 163 ----------FDLGQAD-------PYYILPIVAGITTFIQQKLMMAGTAGQNPQMA---M 202

Query: 296 LTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQ-------QVWLQKFGGAK 340
           +   +P+MI  FA++ P+ LSLYW   N+   AQ       ++   K GG+K
Sbjct: 203 MLWLMPIMILIFAINFPAALSLYWVVGNIFMIAQTYLIKGPEIKASKAGGSK 254

Length = 255

>gnl|CDD|234887 PRK01001, PRK01001, putative inner membrane protein translocase component YidC; Provisional

 Score =  111 bits (279), Expect = 7e-26
 Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 26/226 (11%)

Query: 116 HVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLET 175
            +  ++G +IILLTV +K   +PL    + S   M+ L+P ++ IQ++Y  + +R Q+E 
Sbjct: 571 FLTGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPKRAQMEI 630

Query: 176 ARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFF---WIPSLAGPTTI 232
             LYK   +NP+ GCLP L  +P  I ++  L +     LL    F   WI +L  P  +
Sbjct: 631 MALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKS---SFLLRGASFIPGWIDNLTAPDVL 687

Query: 233 AARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDP---N 289
                    SW  P         W     + +LP+LL V  +   K I S +   P    
Sbjct: 688 --------FSWETPI--------WFIGNEFHLLPILLGVVMFAQQK-ISSLKRKGPVTDQ 730

Query: 290 MKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQK 335
            +  +A+   + L+  +   + PSGL++YW ++ LL   QQ    K
Sbjct: 731 QRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLLGVIQQWVTNK 776

Length = 795

>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase component YidC; Provisional

 Score =  103 bits (259), Expect = 1e-24
 Identities = 75/315 (23%), Positives = 133/315 (42%), Gaps = 79/315 (25%)

Query: 120 AYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLY 179
           A+  +++ L   ++A  +    +Q+ ++  M+ L PQ+KA+Q++Y  D++++ LE  +L 
Sbjct: 31  AWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQKMALEMQKLQ 90

Query: 180 KLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGS 239
           K  G NP+ GCLP LA IPV++GL+  L +    G    GF       G   ++  +N +
Sbjct: 91  KEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTG---TGF-------GQLGMSVEENRN 140

Query: 240 GISWLF------PFVDGH---PPLGWSDTFAYLVLPV--LLVVSQYISVKII-------- 280
             +++F       F+D      PL      AY+ +P   L     +    II        
Sbjct: 141 TPNYVFSAEDVQSFLDARLFGAPLS-----AYITMPRSGLDAFVDFTRTNIILVGVPLMI 195

Query: 281 -------------------QSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFT 321
                              +++ N    M +  AL  F PL +      +P  + LYW +
Sbjct: 196 IAGVATHFNSRASVARQSAEAAANPQTAMMNKLALWVF-PLGVLVGGPFLPLAILLYWVS 254

Query: 322 NNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLDINKSVPGLSSTKKEARQAEKLTTEG 381
           NN+ +  QQ ++            F  I K+E              KK+A+   +     
Sbjct: 255 NNIWTFGQQHYV------------FGKIDKEE------------EAKKQAKAERRAAN-A 289

Query: 382 PRPGEKFKQIREQEA 396
           P+PG K K+ +++  
Sbjct: 290 PKPGAKPKRSKKKAP 304

Length = 304

>gnl|CDD|235058 PRK02654, PRK02654, putative inner membrane protein translocase component YidC; Provisional

 Score = 82.3 bits (204), Expect = 5e-17
 Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 6/95 (6%)

Query: 117 VPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAP----QVKAIQERYAGDQERIQ 172
           VP +YG AI+ LT++++ A +PL+   + +   M+   P    +   IQERY  D ++ Q
Sbjct: 24  VP-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYKNDPQKQQ 82

Query: 173 LETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 207
            E  +L K  G NPLAGCLP L  +P+   L+  L
Sbjct: 83  EEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATL 116

Length = 375

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 80.3 bits (198), Expect = 3e-16
 Identities = 87/399 (21%), Positives = 148/399 (37%), Gaps = 70/399 (17%)

Query: 120 AYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAG--DQERIQLETAR 177
           A+  ++  L + V+A   P T +Q +S      + P+ KA++E Y G  D+  I+    +
Sbjct: 31  AWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDEASIRELQQK 90

Query: 178 ---LYKLAGINPLAGCLPTLATIPVWIGLYRALSNVA--DEGLLTEGFFWIPSLAGPTTI 232
              L K  G NPLAGC+P L  IPV++GLY+ L  +A  + GL       I  L     +
Sbjct: 91  QKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLT-SEEV 149

Query: 233 AARQNGSGISWLFPFVDGHPP-----LGWS-DTFAYLVLPVLLVVSQYISVKIIQSS--- 283
            +   G   +   P     P      LG +  T    VLP+ +  + + ++ +  S+   
Sbjct: 150 ESFLQGRVFNVPLPAYVSMPAEQLAYLGTTQATVLAFVLPLFIAAAVFTAINMAMSTYRS 209

Query: 284 -QNNDPNMKSSQALTNFL----------PLMIGYFALSVPSGLSLYWFTNNLLSTAQQVW 332
            Q ND +   +  +  FL          PL +G      P+ ++LYW  NNL +  Q + 
Sbjct: 210 FQTNDHDSGFAVGMLKFLIVMAILAPIFPLSLGLTG-PFPTAIALYWVANNLWTLIQNII 268

Query: 333 LQKFGGAKDPM-KQFSDI------IKDERLDINKS------------------VPGLSST 367
           +      K P+  +F +          E+    K+                   P L + 
Sbjct: 269 MYLILERKYPLTDEFKEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAE 328

Query: 368 ----KKEARQAEKLTTEGPRPGEKFKQIREQEARRRQQREEEKRKAAEAAAKGNQTINGE 423
               KK     +           K ++    + RR  +RE  +    E AA   +     
Sbjct: 329 NAEIKKTRTAEKN--------EAKARKKEIAQKRRAAEREINREARQERAAAMARARARR 380

Query: 424 QEREASILGSAKGVQTDLVDKDDE----NFPSVTGDNAS 458
              +A   G       +    ++E    + P V     +
Sbjct: 381 AAVKAKKKGLIDASPNEDTPSENEESKGSPPQVEATTTA 419

Length = 429

>gnl|CDD|235012 PRK02201, PRK02201, putative inner membrane protein translocase component YidC; Provisional

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 43/233 (18%), Positives = 90/233 (38%), Gaps = 45/233 (19%)

Query: 123 FAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGD------QERIQLETA 176
            AII++ +I++  +F +T K   +      L  +   I  +Y         ++R Q E  
Sbjct: 135 LAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMKQRKQQEIQ 194

Query: 177 RLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQ 236
            LYK   I+P +  +    T+P++I +YR + +             +PS+    T     
Sbjct: 195 ELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQS-------------LPSIK--VTTWLGI 239

Query: 237 NGSGISW--LFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKI-----------IQSS 283
           + S  SW  +F           +  + YL + +++V  Q +S  +              +
Sbjct: 240 DLSATSWQEIF-----------AGNWIYLPILIIVVPVQALSQLLPQILNKKKNKERTLN 288

Query: 284 QNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKF 336
                 +K      N + ++  +F +   +G+ +YW    + +  Q + +  F
Sbjct: 289 VKEKEALKKQNKTQNIISIVFIFFGVIFAAGVQIYWIIGGIWTILQTLGIHYF 341

Length = 357

>gnl|CDD|235040 PRK02463, PRK02463, OxaA-like protein precursor; Provisional

 Score = 71.7 bits (176), Expect = 9e-14
 Identities = 57/222 (25%), Positives = 85/222 (38%), Gaps = 47/222 (21%)

Query: 121 YGFAIILLTVIVKAATFPLTKKQVES----SMAMRSLAPQVKAIQERY--AGDQER---I 171
           +G AII++T+IV+    PL   Q       S  M  L P  + I ER   A  QE     
Sbjct: 60  FGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERLKNATTQEEKMAA 119

Query: 172 QLETARLYKLAGINPLA--GCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP 229
           Q E     +  GI+ L   GCLP L  +P +  LY A      +G+ T  F  I      
Sbjct: 120 QTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYT--KGVSTSTFLGI------ 171

Query: 230 TTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPN 289
                                   LG        ++ VL     ++S+  +   Q     
Sbjct: 172 -----------------------DLGSPSLVLTAIIGVLYFFQSWLSMMGVPEEQR---- 204

Query: 290 MKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQV 331
            +  +A+   +P+M+  F+ S P+G+ LYW      S  QQ+
Sbjct: 205 -EQMKAMMYMMPIMMVVFSFSSPAGVGLYWLVGGFFSIIQQL 245

Length = 307

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.1 bits (106), Expect = 9e-05
 Identities = 36/180 (20%), Positives = 70/180 (38%), Gaps = 26/180 (14%)

Query: 344  KQFSDIIKDERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQIREQEARRRQQRE 403
            K+ ++  K    D  K+   L    +EA++AE+L  +     +K +++++ E   + + E
Sbjct: 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAE 1733

Query: 404  EEKRKAAEAAAKGN-------------QTINGEQEREASILGSAKGVQTDLVDKDDENFP 450
            E K++A E   K                    E+++   I    + V  + +D++DE   
Sbjct: 1734 EAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793

Query: 451  SV----TGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNEVSANSEV-DGRNEQQSQ 505
                    D   N    I G          +  + +  + + E SA  EV D +N Q  +
Sbjct: 1794 MEVDKKIKDIFDNFANIIEGG--------KEGNLVINDSKEMEDSAIKEVADSKNMQLEE 1845

Length = 2084

>gnl|CDD|164753 MTH00207, ND5, NADH dehydrogenase subunit 5; Provisional

 Score = 41.7 bits (98), Expect = 9e-04
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 9/120 (7%)

Query: 224 PSLAGPT---TIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVV-SQYISVKI 279
            SL  P    T+ A  +GS ++W  P     P L       Y +LP+L+V     ++   
Sbjct: 417 KSLTTPMLLLTLGAITSGSALNWWLPTPQEEPIL----PLQYKLLPLLVVTLGALLAWLF 472

Query: 280 IQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSL-YWFTNNLLSTAQQVWLQKFGG 338
              +    P + ++        LM     LS    +S     ++N L    Q WL+  G 
Sbjct: 473 TTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWLEMLGA 532

Length = 572

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	514
PRK02944	255	OxaA-like protein precursor; Validated	100.0
PRK01001	795	putative inner membrane protein translocase compon	100.0
PRK00145	223	putative inner membrane protein translocase compon	100.0
PRK01318	521	membrane protein insertase; Provisional	100.0
PRK01622	256	OxaA-like protein precursor; Validated	100.0
PRK02463	307	OxaA-like protein precursor; Provisional	100.0
PRK00247	429	putative inner membrane protein translocase compon	100.0
PRK01315	329	putative inner membrane protein translocase compon	100.0
TIGR03592	181	yidC_oxa1_cterm membrane protein insertase, YidC/O	100.0
PRK03449	304	putative inner membrane protein translocase compon	100.0
PRK02201	357	putative inner membrane protein translocase compon	100.0
COG0706	314	YidC Preprotein translocase subunit YidC [Intracel	100.0
PF02096	198	60KD_IMP: 60Kd inner membrane protein; InterPro: I	100.0
PRK02654	375	putative inner membrane protein translocase compon	100.0
KOG1239	372	consensus Inner membrane protein translocase invol	99.87
KOG1239	372	consensus Inner membrane protein translocase invol	99.07
COG1422	201	Predicted membrane protein [Function unknown]	94.7
PRK00247	429	putative inner membrane protein translocase compon	93.92

>PRK02944 OxaA-like protein precursor; Validated

Probab=100.00  E-value=1e-52  Score=418.57  Aligned_cols=219  Identities=27%  Similarity=0.603  Sum_probs=192.3

Q ss_pred             ccccccccc---ccccccchhhhHHHHHHHHHHHHHhhhhhcccCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhh
Q 010237           77 AVSSSDAVT---TTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSL  153 (514)
Q Consensus        77 a~~~~d~~~---~~~~~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~L  153 (514)
                      ..++|+...   .+..+|.|+++|+.++++++.++|..+     +.+||+|||++|+++|++++|++++|+|+++||+++
T Consensus        17 ~~~gc~~~~~~~~~~~~g~~~~~~~~p~~~~l~~i~~~~-----g~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~i   91 (255)
T PRK02944         17 ILAGCSEVNQPITPKSTGFWNEYFVYPLSQLITYFANLF-----GSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQAL   91 (255)
T ss_pred             HHhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHh-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            356776542   445677788889999999999998853     468999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhhcC----HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccccceeccCCCCc
Q 010237          154 APQVKAIQERYAGD----QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP  229 (514)
Q Consensus       154 qPel~~IqeKyk~D----~qk~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFLWi~DLs~P  229 (514)
                      |||+++||+||++|    ++++|+|+++|||||||||++||+|+|+|+|||||+|++++++.+  +.+++|+|+ ||+.+
T Consensus        92 qPe~~~iq~kyk~~~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~~--l~~~~flW~-dLs~~  168 (255)
T PRK02944         92 QPEMQKLKEKYSSKDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSE--ISKHSFLWF-DLGQA  168 (255)
T ss_pred             cHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhHH--HhhcCCCcc-ccCcc
Confidence            99999999999864    568899999999999999999999999999999999999998864  677899999 99887


Q ss_pred             hhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHhh
Q 010237          230 TTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFAL  309 (514)
Q Consensus       230 D~iaa~~~G~~iswl~p~~~g~~~Lg~~D~lpy~ILPIL~~~s~fls~~i~~~~q~~dp~~k~~k~mm~~mPlmi~~f~~  309 (514)
                      |                              ||+|||+++++++|++.++.......  +..+++.|+++||+++++|++
T Consensus       169 D------------------------------p~~iLPil~~~~~~~~~~~~~~~~~~--~~~~~~~m~~i~p~~~~~~~~  216 (255)
T PRK02944        169 D------------------------------PYYILPIVAGITTFIQQKLMMAGTAG--QNPQMAMMLWLMPIMILIFAI  216 (255)
T ss_pred             h------------------------------HHHHHHHHHHHHHHHHHHhcccCCCC--CCHHHHHHHHHHHHHHHHHHH
Confidence            6                              78999999999999998875332211  223577899999999999999


Q ss_pred             hhhhHhHHHHHhhhHHHHHHHHHHHH
Q 010237          310 SVPSGLSLYWFTNNLLSTAQQVWLQK  335 (514)
Q Consensus       310 ~~PaGL~LYWitSNlfsiiQq~iL~k  335 (514)
                      ++|+||++||++||+|+++|+++++.
T Consensus       217 ~~Pagl~lYw~~s~~~~i~Q~~~l~~  242 (255)
T PRK02944        217 NFPAALSLYWVVGNIFMIAQTYLIKG  242 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999975

>PRK01001 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=6.9e-53  Score=461.82  Aligned_cols=267  Identities=28%  Similarity=0.481  Sum_probs=207.9

Q ss_pred             cceeeEEeeccCCCCCchhhhhhhhhcccccccccccccccccc---cc-ccccccchhhhHHHHHHHHHHHHHhhhhhc
Q 010237           40 GSICVAKFGLRPDPNSADGVKELLGVAERLLFTLADAAVSSSDA---VT-TTKQNSDWLSGITNVMETVLKVLKDGMSTL  115 (514)
Q Consensus        40 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ad~a~~~~d~---~~-~~~~~~~w~~~i~~~me~vL~~L~~~L~~i  115 (514)
                      +.....+|.++-||-+...++.+            |........   .+ ..-...|||++|+.++..++.++..++..+
T Consensus       505 ~~~~~~~~~lY~GPkd~~~Lk~~------------~~~~~~~~~~~~~~l~~i~~~GWf~fI~~Pia~~L~~ll~~fh~l  572 (795)
T PRK01001        505 KEAGTYRFLVYAGPLADPTLKTL------------DRAYTNSKGENPEYLDSITFRGFFSFITEPFAALLFIIMKFFKFL  572 (795)
T ss_pred             CCcceEEEEEEeCCCcHHHHHHh------------hhhcccccccccchhhhhhhccHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55667888888888775555221            111100000   00 111245899999999877665554443322


Q ss_pred             ccCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCcCchHHHH
Q 010237          116 HVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLA  195 (514)
Q Consensus       116 h~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D~qk~qqEm~kLYKk~gVNPl~GCLP~LI  195 (514)
                        .+|||+|||++||+||++++||+++|+|||+||+.|||+|++||+||++|++++|+|||+|||+|||||++||||+||
T Consensus       573 --~GnwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~qK~QqEmMkLYKe~GVNPl~GCLPmLI  650 (795)
T PRK01001        573 --TGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVNPITGCLPLLI  650 (795)
T ss_pred             --cchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence              348999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhccccccce--eccCCCCchhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHHH
Q 010237          196 TIPVWIGLYRALSNVADEGLLTEGFF--WIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQ  273 (514)
Q Consensus       196 QIPIFIgLY~vLr~~a~~gl~t~gFL--Wi~DLs~PD~iaa~~~G~~iswl~p~~~g~~~Lg~~D~lpy~ILPIL~~~s~  273 (514)
                      ||||||+||++|+++..  +...+|+  |++||+.||++.        .|.+|.    +.+  .|  ++.||||+++++|
T Consensus       651 QmPIFfALY~vL~~sie--LRgasFLpgWI~DLSapDplf--------~~~~~i----~Fi--Gd--~i~ILPILmgvtm  712 (795)
T PRK01001        651 QLPFLIAMFDLLKSSFL--LRGASFIPGWIDNLTAPDVLF--------SWETPI----WFI--GN--EFHLLPILLGVVM  712 (795)
T ss_pred             HHHHHHHHHHHHHHhHH--hcCCchhhhhHhhccCCCccc--------cccccc----ccc--cc--chhHHHHHHHHHH
Confidence            99999999999998753  5567887  999999999532        222221    001  12  6789999999999


Q ss_pred             HHHHHHhcccC--CCCcchHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHhhhHHHHHHHHHHHHhcC
Q 010237          274 YISVKIIQSSQ--NNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGG  338 (514)
Q Consensus       274 fls~~i~~~~q--~~dp~~k~~k~mm~~mPlmi~~f~~~~PaGL~LYWitSNlfsiiQq~iL~k~~~  338 (514)
                      |+++++++...  +.++++++++.|+++||+||++|+.++|+||+|||++||+|+++||+++++.+.
T Consensus       713 flqqkls~~~~~dp~t~qq~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl~SI~QQ~iI~k~~~  779 (795)
T PRK01001        713 FAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLLGVIQQWVTNKILD  779 (795)
T ss_pred             HHHHHhcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence            99998764321  122234456678899999999999999999999999999999999999998543

>PRK00145 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.9e-52  Score=409.31  Aligned_cols=209  Identities=30%  Similarity=0.605  Sum_probs=188.0

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhcc--cCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcCHHHH
Q 010237           94 LSGITNVMETVLKVLKDGMSTLH--VPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERI  171 (514)
Q Consensus        94 ~~~i~~~me~vL~~L~~~L~~ih--~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D~qk~  171 (514)
                      +++|.+++..+++++|+.+..++  .++|||+|||++|+++|++++|++++|+|+++||+++||++++||+||++|++++
T Consensus         2 ~~~i~~~~~~~l~~~~~~~~~~~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~   81 (223)
T PRK00145          2 MRYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKL   81 (223)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHH
Confidence            45677777788888888776554  3689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccccceeccCCCCchhHhhhhcCCCccccccccCCC
Q 010237          172 QLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGH  251 (514)
Q Consensus       172 qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFLWi~DLs~PD~iaa~~~G~~iswl~p~~~g~  251 (514)
                      |+|+++|||||||||++||+|+|+|+|||+++|+++++++.  +.+++|+|++||+.+|                     
T Consensus        82 ~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~~~--~~~~~flW~~dLt~~D---------------------  138 (223)
T PRK00145         82 QQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLTG--INGVSFLWIKDLAKPD---------------------  138 (223)
T ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhhh--ccCCCccChhhccCcc---------------------
Confidence            99999999999999999999999999999999999999863  7788999999999887                     


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHhhhHHHHHHHH
Q 010237          252 PPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQV  331 (514)
Q Consensus       252 ~~Lg~~D~lpy~ILPIL~~~s~fls~~i~~~~q~~dp~~k~~k~mm~~mPlmi~~f~~~~PaGL~LYWitSNlfsiiQq~  331 (514)
                               ||+|||+++++++|++++.+....  ..+.++++.|+++||++++++++++|+||+|||++||+|+++|++
T Consensus       139 ---------p~~iLPil~~~~~~l~~~~~~~~~--~~~~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~  207 (223)
T PRK00145        139 ---------ITWILPILSGATTYLSGYLMTKAD--SSQAGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTY  207 (223)
T ss_pred             ---------hHHHHHHHHHHHHHHHHHHcCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     689999999999999988764431  223346778899999999999999999999999999999999999


Q ss_pred             HHHHh
Q 010237          332 WLQKF  336 (514)
Q Consensus       332 iL~k~  336 (514)
                      ++++.
T Consensus       208 ~l~~~  212 (223)
T PRK00145        208 FIKKL  212 (223)
T ss_pred             HHHhh
Confidence            99874

>PRK01318 membrane protein insertase; Provisional

Probab=100.00  E-value=2.3e-51  Score=443.26  Aligned_cols=207  Identities=37%  Similarity=0.698  Sum_probs=186.3

Q ss_pred             ccchhhhHHHHHHHHHHHHHhhhhhcccCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcCHH
Q 010237           90 NSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQE  169 (514)
Q Consensus        90 ~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D~q  169 (514)
                      +-||+.+|+.++.++++++|.++      +|||+|||++||+||++++||+++|+|+++||+++||+|++||+||++|++
T Consensus       298 ~~G~~~~~~~pl~~~L~~i~~~~------g~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~~  371 (521)
T PRK01318        298 DYGWLWFITKPLFWLLDFLHSFV------GNWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQ  371 (521)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhHH
Confidence            56799999999999999998743      399999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccccce-eccCCCCchhHhhhhcCCCcccccccc
Q 010237          170 RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFF-WIPSLAGPTTIAARQNGSGISWLFPFV  248 (514)
Q Consensus       170 k~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFL-Wi~DLs~PD~iaa~~~G~~iswl~p~~  248 (514)
                      ++|+|||+|||+|||||++||||+|+||||||++|++++++.+  +.+.+|+ ||+||+.||                  
T Consensus       372 k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e--l~~~~fl~Wi~DLs~~D------------------  431 (521)
T PRK01318        372 KMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE--LRHAPFIGWIHDLSAPD------------------  431 (521)
T ss_pred             HHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH--hccCchheeeccccccc------------------
Confidence            9999999999999999999999999999999999999998764  6677887 999999988                  


Q ss_pred             CCCCCCCCchhHHHHHH-----HHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHhhh
Q 010237          249 DGHPPLGWSDTFAYLVL-----PVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNN  323 (514)
Q Consensus       249 ~g~~~Lg~~D~lpy~IL-----PIL~~~s~fls~~i~~~~q~~dp~~k~~k~mm~~mPlmi~~f~~~~PaGL~LYWitSN  323 (514)
                                  ||+||     ||++++++|++++++...  .+|   +++.||.+||+++++|+.++|+||+|||++||
T Consensus       432 ------------p~~il~~~~lPil~~~~~~~~~~l~~~~--~~~---~q~kim~~mpi~~~~~~~~~PagL~lYW~~sn  494 (521)
T PRK01318        432 ------------PYFILHIGLLPILMGITMFLQQKLNPTP--TDP---MQAKIMKFMPLIFTFFFLSFPAGLVLYWIVNN  494 (521)
T ss_pred             ------------cchhHHHHHHHHHHHHHHHHHHHhcCCC--CCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        45566     999999999999886432  344   34566777999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCC
Q 010237          324 LLSTAQQVWLQKFGGA  339 (514)
Q Consensus       324 lfsiiQq~iL~k~~~~  339 (514)
                      +|+++||+++++.+..
T Consensus       495 ~~si~Q~~~l~~~~~~  510 (521)
T PRK01318        495 LLTIIQQYLINRRLEK  510 (521)
T ss_pred             HHHHHHHHHHhhhccc
Confidence            9999999999986443

>PRK01622 OxaA-like protein precursor; Validated

Probab=100.00  E-value=1.3e-50  Score=403.56  Aligned_cols=220  Identities=27%  Similarity=0.499  Sum_probs=190.2

Q ss_pred             cccccccc--ccccccchhhhHHHHHHHHHHHHHhhhhhcccCcchHHHHHHHHHHHHhhhccccHHHHHH----HHHHH
Q 010237           78 VSSSDAVT--TTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVES----SMAMR  151 (514)
Q Consensus        78 ~~~~d~~~--~~~~~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~kS----~aKMq  151 (514)
                      .++|++..  .+..+|.|++++++++..++.++|+.+     +.+||+||+++|+++|++++|++++|+|+    ++||+
T Consensus        20 ~~gc~~~~~~~~~~~~~~~~~~~~p~~~ll~~l~~~~-----~~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~   94 (256)
T PRK01622         20 LSGCSNAAPIDAHSDGFFDHYFVYPFSFLIQFVAHHI-----GGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMA   94 (256)
T ss_pred             HhccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            56776653  344577788889999999999998854     36899999999999999999999999999    89999


Q ss_pred             hhcHHHHHHHHHhhc--CHH---HHHHHHHHHHHHcCCCCCc-CchHHHHHHHHHHHHHHHHHhhhhhccccccceeccC
Q 010237          152 SLAPQVKAIQERYAG--DQE---RIQLETARLYKLAGINPLA-GCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPS  225 (514)
Q Consensus       152 ~LqPel~~IqeKyk~--D~q---k~qqEm~kLYKk~gVNPl~-GCLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFLWi~D  225 (514)
                      ++||++++||+||++  |++   ++|+|+++|||||||||++ ||+|+|+|+||||++|+++|++.  ++.+++|+|+ |
T Consensus        95 ~iqP~l~~iq~kyk~~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~--~l~~~~flW~-d  171 (256)
T PRK01622         95 VMKPELDKIQAKLKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE--EIASHSFLWF-N  171 (256)
T ss_pred             HhCHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh--hccCCCceee-C
Confidence            999999999999986  433   5789999999999999999 99999999999999999999975  4788999999 8


Q ss_pred             CCCchhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHH
Q 010237          226 LAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIG  305 (514)
Q Consensus       226 Ls~PD~iaa~~~G~~iswl~p~~~g~~~Lg~~D~lpy~ILPIL~~~s~fls~~i~~~~q~~dp~~k~~k~mm~~mPlmi~  305 (514)
                      |+.+|                                +|||+++++++++++++++.......+.++++.|+++||++++
T Consensus       172 Ls~~D--------------------------------~ILPil~~~~~~~~~~~~~~~~~~~~q~~~~k~m~~~~pi~~~  219 (256)
T PRK01622        172 LGHAD--------------------------------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAMIL  219 (256)
T ss_pred             Ccchh--------------------------------HHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence            87653                                6899999999999988765322222233467889999999999


Q ss_pred             HHhhhhhhHhHHHHHhhhHHHHHHHHHHHHhc
Q 010237          306 YFALSVPSGLSLYWFTNNLLSTAQQVWLQKFG  337 (514)
Q Consensus       306 ~f~~~~PaGL~LYWitSNlfsiiQq~iL~k~~  337 (514)
                      ++++++|+||++||++||+|+++|++++++.+
T Consensus       220 ~~~~~~Psgl~lYW~~snl~si~Q~~~l~~~~  251 (256)
T PRK01622        220 FMSFAAPSALVLYWITGGLFLMGQTIVLRKVM  251 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999853

>PRK02463 OxaA-like protein precursor; Provisional

Probab=100.00  E-value=2.5e-50  Score=410.59  Aligned_cols=219  Identities=25%  Similarity=0.396  Sum_probs=187.4

Q ss_pred             cccccccc-ccccccchhhhHHHHHHHHHHHHHhhhhhcccCcchHHHHHHHHHHHHhhhccccHHHHHH----HHHHHh
Q 010237           78 VSSSDAVT-TTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVES----SMAMRS  152 (514)
Q Consensus        78 ~~~~d~~~-~~~~~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~kS----~aKMq~  152 (514)
                      .++|.... .|...|-|++.++.|+..++++++..     ++++||+|||++||+||++++||+++|+++    ++||+.
T Consensus        21 lsgc~~~~~~~~~~g~~~~~l~~p~~~~l~~i~~~-----~g~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~   95 (307)
T PRK02463         21 LTGCVGRDKHGNPTGFIWNFLGAPMSYFIDYFANN-----LGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAY   95 (307)
T ss_pred             HhccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56776553 34556666788999999999998874     346899999999999999999999988875    689999


Q ss_pred             hcHHHHHHHHHhhcC-----HHHHHHHHHHHHHHcCCCCCc--CchHHHHHHHHHHHHHHHHHhhhhhccccccceeccC
Q 010237          153 LAPQVKAIQERYAGD-----QERIQLETARLYKLAGINPLA--GCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPS  225 (514)
Q Consensus       153 LqPel~~IqeKyk~D-----~qk~qqEm~kLYKk~gVNPl~--GCLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFLWi~D  225 (514)
                      +||++++||+||+++     ++++|+|+|+|||||||||++  ||||+|||+|||||+|+++++.  +++.+++|+|+ |
T Consensus        96 lqPe~~~Iq~Kyk~~~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~~--~~l~~~~flwi-d  172 (307)
T PRK02463         96 LKPVFEPINERLKNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYT--KGVSTSTFLGI-D  172 (307)
T ss_pred             hChhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhcc--hhhccCCeeee-e
Confidence            999999999999863     335689999999999999998  8999999999999999999975  45888999999 8


Q ss_pred             CCCchhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHH
Q 010237          226 LAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIG  305 (514)
Q Consensus       226 Ls~PD~iaa~~~G~~iswl~p~~~g~~~Lg~~D~lpy~ILPIL~~~s~fls~~i~~~~q~~dp~~k~~k~mm~~mPlmi~  305 (514)
                      |+.|                                +++||++++++++++++++....+ +.+.++++.|+++||+|++
T Consensus       173 L~~p--------------------------------~~iLpii~~v~~~~q~~~~~~~~~-~~q~~~mk~m~~~~Pim~~  219 (307)
T PRK02463        173 LGSP--------------------------------SLVLTAIIGVLYFFQSWLSMMGVP-EEQREQMKAMMYMMPIMMV  219 (307)
T ss_pred             cCch--------------------------------hHHHHHHHHHHHHHHHHHhccCCC-hhHHHHHHHHHHHHHHHHH
Confidence            8654                                478999999999998887543332 2244567889999999999


Q ss_pred             HHhhhhhhHhHHHHHhhhHHHHHHHHHHHHhc
Q 010237          306 YFALSVPSGLSLYWFTNNLLSTAQQVWLQKFG  337 (514)
Q Consensus       306 ~f~~~~PaGL~LYWitSNlfsiiQq~iL~k~~  337 (514)
                      +|++++|+||+|||++||+|+++||+++++++
T Consensus       220 ~~~~~~PagL~lYW~~snlfsi~Q~~i~~~~~  251 (307)
T PRK02463        220 VFSFSSPAGVGLYWLVGGFFSIIQQLITTYIL  251 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999764

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=100.00  E-value=2.9e-49  Score=416.32  Aligned_cols=258  Identities=23%  Similarity=0.323  Sum_probs=193.6

Q ss_pred             hhhHHHHHHHHHHHHHhhhhh-ccc--CcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcC---
Q 010237           94 LSGITNVMETVLKVLKDGMST-LHV--PYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGD---  167 (514)
Q Consensus        94 ~~~i~~~me~vL~~L~~~L~~-ih~--~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D---  167 (514)
                      +++|++|+.+|+.++|+++.. ++.  +++||++|+++||+||++++||+++|+|+++||+.|||+|++||+||+++   
T Consensus         2 ~~~~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~   81 (429)
T PRK00247          2 LDIFIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDE   81 (429)
T ss_pred             ccHHHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCH
Confidence            678999999999999998873 443  56799999999999999999999999999999999999999999999875   


Q ss_pred             --HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhh--hccccccceeccCCCCchhHh---hhhcCCC
Q 010237          168 --QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVAD--EGLLTEGFFWIPSLAGPTTIA---ARQNGSG  240 (514)
Q Consensus       168 --~qk~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~--~gl~t~gFLWi~DLs~PD~ia---a~~~G~~  240 (514)
                        ++++++|+++|||+|||||++||||+|||+|||||||++|++|+.  +|+.+..+.|+--|+.++...   +..+|.+
T Consensus        82 e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~fGvp  161 (429)
T PRK00247         82 ASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEVESFLQGRVFNVP  161 (429)
T ss_pred             HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccCCHHHHHHHHhccccCCC
Confidence              357899999999999999999999999999999999999999974  455544444555555544211   2334544


Q ss_pred             ccccccccC-CCCC--CCCchhHHHHHHHHHHHHH--HHHHHHHhcccC--C---CCc----chHHHHHHHHHHHHHHHH
Q 010237          241 ISWLFPFVD-GHPP--LGWSDTFAYLVLPVLLVVS--QYISVKIIQSSQ--N---NDP----NMKSSQALTNFLPLMIGY  306 (514)
Q Consensus       241 iswl~p~~~-g~~~--Lg~~D~lpy~ILPIL~~~s--~fls~~i~~~~q--~---~dp----~~k~~k~mm~~mPlmi~~  306 (514)
                      ++-.+-... +..-  .+.+| +.+++||++++++  +++++.++...+  .   .++    +++++..|++++|+|+++
T Consensus       162 L~~~~sm~~e~~~~~~~~~~~-v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~Pim~~~  240 (429)
T PRK00247        162 LPAYVSMPAEQLAYLGTTQAT-VLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLS  240 (429)
T ss_pred             cccccccchhhhhhccCCccc-hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHhHHHHHH
Confidence            432111000 0000  12233 3468888555554  456666543221  1   122    223355566889999998


Q ss_pred             Hhhh--hhhHhHHHHHhhhHHHHHHHHHHHHhcCCCCCCccchhhhhh
Q 010237          307 FALS--VPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKD  352 (514)
Q Consensus       307 f~~~--~PaGL~LYWitSNlfsiiQq~iL~k~~~~k~Pl~~~~~i~k~  352 (514)
                      ++++  ||+||+|||++||+|+++||++++..+..++|+.+.++...+
T Consensus       241 ~g~~~~~PaallLYWv~snlwtl~Qq~i~~~~l~~~~P~~~~~~~~~~  288 (429)
T PRK00247        241 LGLTGPFPTAIALYWVANNLWTLIQNIIMYLILERKYPLTDEFKEHHA  288 (429)
T ss_pred             HHHhccchHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchHHHHH
Confidence            8776  799999999999999999999999888899999998855443

>PRK01315 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.2e-49  Score=408.41  Aligned_cols=241  Identities=28%  Similarity=0.467  Sum_probs=184.0

Q ss_pred             ccchhhhHHHHHHHHH----HHHHhhhhhc-c--cCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHH
Q 010237           90 NSDWLSGITNVMETVL----KVLKDGMSTL-H--VPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQE  162 (514)
Q Consensus        90 ~~~w~~~i~~~me~vL----~~L~~~L~~i-h--~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~Iqe  162 (514)
                      -.+||+.|++|+++++    .++|+++..+ +  .+++||+|||++|++||++++||+++|+|+++||+++||+|++||+
T Consensus         4 ~~~~~~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~   83 (329)
T PRK01315          4 LADFGSAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQE   83 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            3578999998877766    6668877655 2  2469999999999999999999999999999999999999999999


Q ss_pred             HhhcCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccccceeccCCCCchhHhhhhcCCCcc
Q 010237          163 RYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGIS  242 (514)
Q Consensus       163 Kyk~D~qk~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFLWi~DLs~PD~iaa~~~G~~is  242 (514)
                      ||++|++++++|+++|||||||||++||||+|+|+||||++|++|++++..+  ..-.+|.+++...- ..+..+|.+++
T Consensus        84 kyk~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~~~~--~~~~~~~~~~~~s~-~~~~~fg~~L~  160 (329)
T PRK01315         84 KYKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAASRG--DGIGPINPPLLESF-RHAHIFGAPLA  160 (329)
T ss_pred             HHHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccchhhhHHHhh-hcccccccccc
Confidence            9999999999999999999999999999999999999999999999865321  11123433332110 00111122221


Q ss_pred             -ccccccCCCCCCCCch-hHHHHHHHHHHHHHHHHHHHH-hccc----CCCCcchHHHHHHHHHHHHHHHHHhhhhhhHh
Q 010237          243 -WLFPFVDGHPPLGWSD-TFAYLVLPVLLVVSQYISVKI-IQSS----QNNDPNMKSSQALTNFLPLMIGYFALSVPSGL  315 (514)
Q Consensus       243 -wl~p~~~g~~~Lg~~D-~lpy~ILPIL~~~s~fls~~i-~~~~----q~~dp~~k~~k~mm~~mPlmi~~f~~~~PaGL  315 (514)
                       ++++..    ..+..+ .+.++|||+++++++|++++. +.+.    +..+|+++++++|+++||+|++++++++|+||
T Consensus       161 ~~f~~~~----~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPim~~~~~~~fPaGL  236 (329)
T PRK01315        161 ATFLQAL----NAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVGV  236 (329)
T ss_pred             ccccccc----cccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             111000    012222 245789999999999998653 2221    22355566788899999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhc
Q 010237          316 SLYWFTNNLLSTAQQVWLQKFG  337 (514)
Q Consensus       316 ~LYWitSNlfsiiQq~iL~k~~  337 (514)
                      +|||++||+|+++||+++.+.+
T Consensus       237 ~LYW~~snl~si~Qq~~v~r~~  258 (329)
T PRK01315        237 LFYWLTSNVWTMGQQFYVIRNN  258 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999988743

>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain

Probab=100.00  E-value=2.8e-49  Score=374.92  Aligned_cols=181  Identities=39%  Similarity=0.759  Sum_probs=168.1

Q ss_pred             chHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHH
Q 010237          120 AYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPV  199 (514)
Q Consensus       120 ~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D~qk~qqEm~kLYKk~gVNPl~GCLP~LIQIPI  199 (514)
                      |||+||+++|+++|++++|++++|+|+++||+++|||+++||+||++|++++++|+++||||||+||++||+|+|+|+||
T Consensus         1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pi   80 (181)
T TIGR03592         1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPI   80 (181)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhccccccceeccCCCCchhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 010237          200 WIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKI  279 (514)
Q Consensus       200 FIgLY~vLr~~a~~gl~t~gFLWi~DLs~PD~iaa~~~G~~iswl~p~~~g~~~Lg~~D~lpy~ILPIL~~~s~fls~~i  279 (514)
                      |+++|+++|++.  ++.++||+|++||+.+|                              ||++||+++++++++++++
T Consensus        81 f~~~~~~lr~~~--~l~~~~flW~~dL~~~D------------------------------p~~iLPii~~~~~~~~~~~  128 (181)
T TIGR03592        81 FIALYQVLRRSI--ELRHAPFLWIKDLSAPD------------------------------PYYILPILMGATMFLQQKL  128 (181)
T ss_pred             HHHHHHHHHhhH--HhccCCCcCccccCccc------------------------------HHHHHHHHHHHHHHHHHHh
Confidence            999999999975  47889999999999887                              7899999999999999988


Q ss_pred             hcccCCCCcchHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHhhhHHHHHHHHHHHH
Q 010237          280 IQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQK  335 (514)
Q Consensus       280 ~~~~q~~dp~~k~~k~mm~~mPlmi~~f~~~~PaGL~LYWitSNlfsiiQq~iL~k  335 (514)
                      ..+.. .  +.++++.|++++|+++++++.++|+|+++||++||+|+++|++++++
T Consensus       129 ~~~~~-~--~~~~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~~  181 (181)
T TIGR03592       129 SPSGP-P--DPAQQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR  181 (181)
T ss_pred             cCCCC-C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            64422 2  22457788899999999999999999999999999999999999874

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.

>PRK03449 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=6.2e-49  Score=399.66  Aligned_cols=233  Identities=24%  Similarity=0.426  Sum_probs=181.8

Q ss_pred             hhhhHHHHHHHHHHHHHhhhhhc-c--cCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcCHH
Q 010237           93 WLSGITNVMETVLKVLKDGMSTL-H--VPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQE  169 (514)
Q Consensus        93 w~~~i~~~me~vL~~L~~~L~~i-h--~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D~q  169 (514)
                      +++.+++|+.+++.++|+++..+ |  .+.+||+|||++|++||++++|++++|+|+++||+++||++++||+||++|++
T Consensus         1 ml~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~   80 (304)
T PRK03449          1 MLDFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQ   80 (304)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHH
Confidence            36788899999999999877542 3  36799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhh--cccc---------------------ccceeccCC
Q 010237          170 RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADE--GLLT---------------------EGFFWIPSL  226 (514)
Q Consensus       170 k~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~~--gl~t---------------------~gFLWi~DL  226 (514)
                      ++++|+++|||||||||++||+|+|+|+||||++|++||++...  |+..                     .+|+|.   
T Consensus        81 ~~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~---  157 (304)
T PRK03449         81 KMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDA---  157 (304)
T ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhh---
Confidence            99999999999999999999999999999999999999998542  2111                     122222   


Q ss_pred             CCchhHhhhhcCCCcc-ccc-cc--cCCCCCCCCchh-HHHHHHHHHHHHHHHHHHHHhcccC----CCCcchH-HHHHH
Q 010237          227 AGPTTIAARQNGSGIS-WLF-PF--VDGHPPLGWSDT-FAYLVLPVLLVVSQYISVKIIQSSQ----NNDPNMK-SSQAL  296 (514)
Q Consensus       227 s~PD~iaa~~~G~~is-wl~-p~--~~g~~~Lg~~D~-lpy~ILPIL~~~s~fls~~i~~~~q----~~dp~~k-~~k~m  296 (514)
                              ..+|.+++ |+. +.  .+....++..|. +..++|||++++++|+++++++..+    ..++++. +++.|
T Consensus       158 --------~~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~~~~~~m~k~M  229 (304)
T PRK03449        158 --------RLFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAANPQTAMMNKLA  229 (304)
T ss_pred             --------hhcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchHHHHHHH
Confidence                    12233332 211 00  000001222232 2456789999999999988754322    1234433 45788


Q ss_pred             HHHHHHHHHHHhhhhhhHhHHHHHhhhHHHHHHHHHHHHh
Q 010237          297 TNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKF  336 (514)
Q Consensus       297 m~~mPlmi~~f~~~~PaGL~LYWitSNlfsiiQq~iL~k~  336 (514)
                      +++||+|++++++++|+||.|||++||+|+++||+++++.
T Consensus       230 ~~~mP~m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~~~  269 (304)
T PRK03449        230 LWVFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQHYVFGK  269 (304)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999863

>PRK02201 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=3.1e-48  Score=401.33  Aligned_cols=223  Identities=18%  Similarity=0.362  Sum_probs=183.7

Q ss_pred             ccchhhhHHHHHHHHHHHHHhhhh-hcccCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcC-
Q 010237           90 NSDWLSGITNVMETVLKVLKDGMS-TLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGD-  167 (514)
Q Consensus        90 ~~~w~~~i~~~me~vL~~L~~~L~-~ih~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D-  167 (514)
                      .|.|++.|++|+.+++.+++.... ....+.+||+|||++|+++|++++||+++|+++++||+++|||+++||+||++| 
T Consensus       101 ~G~f~~~~v~P~~~il~~i~~~~~~~~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~~~  180 (357)
T PRK02201        101 YGPFYGLFVYPIAQIILSIMASQSLSELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYK  180 (357)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence            455889999999999999862111 112367899999999999999999999999999999999999999999999876 


Q ss_pred             -----HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccccceeccCCCCchhHhhhhcCCCcc
Q 010237          168 -----QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGIS  242 (514)
Q Consensus       168 -----~qk~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFLWi~DLs~PD~iaa~~~G~~is  242 (514)
                           ++++|+|+|+|||||||||++||||+|+|+|||+|||++++.+.+  +....|+|+ ||+.+|..          
T Consensus       181 ~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~~--l~~~~flgi-dLs~~~~~----------  247 (357)
T PRK02201        181 KDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLPS--IKVTTWLGI-DLSATSWQ----------  247 (357)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhHh--hccCCCccc-ccCCCChh----------
Confidence                 778999999999999999999999999999999999999998864  667889999 99887621          


Q ss_pred             ccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhc----ccC-----C--CCcchHHHHHHHHHHHHHHHHHhhhh
Q 010237          243 WLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQ----SSQ-----N--NDPNMKSSQALTNFLPLMIGYFALSV  311 (514)
Q Consensus       243 wl~p~~~g~~~Lg~~D~lpy~ILPIL~~~s~fls~~i~~----~~q-----~--~dp~~k~~k~mm~~mPlmi~~f~~~~  311 (514)
                      .+           +.+.++|+++++++++++++++.+++    +.+     +  ..++++.++.|+++||++++++++++
T Consensus       248 ~~-----------~~~~~~~l~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~~~  316 (357)
T PRK02201        248 EI-----------FAGNWIYLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGVIF  316 (357)
T ss_pred             hh-----------ccccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            00           11233677777888877777765532    111     1  11233457789999999999999999


Q ss_pred             hhHhHHHHHhhhHHHHHHHHHHHHh
Q 010237          312 PSGLSLYWFTNNLLSTAQQVWLQKF  336 (514)
Q Consensus       312 PaGL~LYWitSNlfsiiQq~iL~k~  336 (514)
                      |+||.|||++||+|+++||++++++
T Consensus       317 PaGL~LYW~~snl~tI~Qq~~i~~~  341 (357)
T PRK02201        317 AAGVQIYWIIGGIWTILQTLGIHYF  341 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999873

>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

Probab=100.00  E-value=4.3e-48  Score=395.45  Aligned_cols=211  Identities=35%  Similarity=0.653  Sum_probs=181.3

Q ss_pred             ccchhhhHHHHHHHHHHHHHhhhhhcccCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhh-cCH
Q 010237           90 NSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYA-GDQ  168 (514)
Q Consensus        90 ~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk-~D~  168 (514)
                      +-+||..+..++..++.+++.+     .+.|||++||++|++||++++|++.+|+++++||+++||++++||+||+ +|+
T Consensus        84 ~~~~f~~~~~~~~~~~~~~~~~-----~g~n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~  158 (314)
T COG0706          84 DYGWFWNILAPLFPLLLFIDSF-----SGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDK  158 (314)
T ss_pred             chhhHHHHHHHHHHHHHHHHHh-----cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCH
Confidence            3456666655566666666442     2348999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccccce-eccCCCCchhHhhhhcCCCccccccc
Q 010237          169 ERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFF-WIPSLAGPTTIAARQNGSGISWLFPF  247 (514)
Q Consensus       169 qk~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFL-Wi~DLs~PD~iaa~~~G~~iswl~p~  247 (514)
                      +++|+|+|+|||||||||++||+|+|+|+||||++|+++++...  +...+|+ |+.||+.+|+                
T Consensus       159 ~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~~--l~~~~f~~w~~dl~~~dp----------------  220 (314)
T COG0706         159 QKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTVE--LRGAPFLGWITDLSLPDP----------------  220 (314)
T ss_pred             HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhccc--ccccchhhhhhcccCCCC----------------
Confidence            99999999999999999999999999999999999999998864  5556676 9999988762                


Q ss_pred             cCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHhhhHHHH
Q 010237          248 VDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLST  327 (514)
Q Consensus       248 ~~g~~~Lg~~D~lpy~ILPIL~~~s~fls~~i~~~~q~~dp~~k~~k~mm~~mPlmi~~f~~~~PaGL~LYWitSNlfsi  327 (514)
                                +  ..+++||++++++|++++++..... +++.+++++|+++||+++.++++++|+||+|||++||+|++
T Consensus       221 ----------~--~~~~~pii~gv~~f~q~~ls~~~~~-~~q~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi  287 (314)
T COG0706         221 ----------D--YILLLPILAGVTMFLQQKLSPRNLS-TPQDPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSI  287 (314)
T ss_pred             ----------c--hhhHHHHHHHHHHHHHHHhccccCC-cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Confidence                      1  1236699999999999998755332 33445788999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 010237          328 AQQVWLQKF  336 (514)
Q Consensus       328 iQq~iL~k~  336 (514)
                      +||+++++.
T Consensus       288 ~Qq~ii~~~  296 (314)
T COG0706         288 LQQYILNKP  296 (314)
T ss_pred             HHHHHHhhh
Confidence            999999975

>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes

Probab=100.00  E-value=8.8e-48  Score=366.76  Aligned_cols=194  Identities=39%  Similarity=0.717  Sum_probs=177.0

Q ss_pred             cchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHH
Q 010237          119 YAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIP  198 (514)
Q Consensus       119 ~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D~qk~qqEm~kLYKk~gVNPl~GCLP~LIQIP  198 (514)
                      .+||+||+++|+++|++++|++++|+|+++||++++|++++||+||++|++++++|++++||||||||++||+|+|+|+|
T Consensus         1 ~sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~P   80 (198)
T PF02096_consen    1 GSWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIP   80 (198)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhh-hccccccceeccCCCCchhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 010237          199 VWIGLYRALSNVAD-EGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISV  277 (514)
Q Consensus       199 IFIgLY~vLr~~a~-~gl~t~gFLWi~DLs~PD~iaa~~~G~~iswl~p~~~g~~~Lg~~D~lpy~ILPIL~~~s~fls~  277 (514)
                      |||++|+++|+++. +++.++||+|++||+.||+.                         ..+||+|||+++++++++++
T Consensus        81 if~~~~~~lr~~~~~~~~~~~g~lw~~dL~~~D~~-------------------------~~~p~~iLPil~~~~~~~~~  135 (198)
T PF02096_consen   81 IFIGLFRALRRMAEVPSLATGGFLWFPDLTAPDPT-------------------------MGLPYFILPILAGASMFLNQ  135 (198)
T ss_pred             HHHHHHHHHHHHHHhcccccCceeChHhcCCCCcc-------------------------chhHHHHHHHHHHHHHHHHH
Confidence            99999999999876 67888999999999999831                         12489999999999999999


Q ss_pred             HHhcc--cCCCCcchHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHhhhHHHHHHHHHHHHhc
Q 010237          278 KIIQS--SQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFG  337 (514)
Q Consensus       278 ~i~~~--~q~~dp~~k~~k~mm~~mPlmi~~f~~~~PaGL~LYWitSNlfsiiQq~iL~k~~  337 (514)
                      ++..+  ......+.++++.|++++|+++++++.++|+|+++||++||+|+++|++++++.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~~  197 (198)
T PF02096_consen  136 ELSMKNSKQKSPQQAKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILRRPF  197 (198)
T ss_pred             HHHHhccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            98653  2223344567888999999999999999999999999999999999999999864

Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane

>PRK02654 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.7e-38  Score=323.27  Aligned_cols=241  Identities=27%  Similarity=0.498  Sum_probs=166.6

Q ss_pred             chhhhHHHHHHHHHHHHHhhhhhcccCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHH----HHHHHhhcC
Q 010237           92 DWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVK----AIQERYAGD  167 (514)
Q Consensus        92 ~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~----~IqeKyk~D  167 (514)
                      ||.....+++..++++++.++      .+||+|||++|++||++++||+++|+|+++||+.+||+|+    +||+||++|
T Consensus         4 G~g~i~~~il~~iL~f~y~~v------gswGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYKdD   77 (375)
T PRK02654          4 GIGFISNNVMLPILDFFYGIV------PSYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYKND   77 (375)
T ss_pred             chHHHHHhHHHHHHHHHHHhc------chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhcCC
Confidence            443333456777788777632      4899999999999999999999999999999999999985    799999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhh--------------h---ccccccc------eecc
Q 010237          168 QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVAD--------------E---GLLTEGF------FWIP  224 (514)
Q Consensus       168 ~qk~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~--------------~---gl~t~gF------LWi~  224 (514)
                      ++++|+|||+|||||| ||++||||+|||+|||++||++||...-              +   ......|      .++.
T Consensus        78 pqk~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~spf~~~~y~~~l~i~p~~qi~~v~~~~~~~~~~~i~~~  156 (375)
T PRK02654         78 PQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRGSPFADVNYTVNLQVLPSEQIAAVQPQPFKSKPQNIFIT  156 (375)
T ss_pred             HHHHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHhCccccccceeecccCCHHHHhhhcCCCcCCCCceEEEe
Confidence            9999999999999999 9999999999999999999999998421              0   0000011      1111


Q ss_pred             CCCC-------c--hhHh---------hhhcCCCc--------------cccc---------------------------
Q 010237          225 SLAG-------P--TTIA---------ARQNGSGI--------------SWLF---------------------------  245 (514)
Q Consensus       225 DLs~-------P--D~ia---------a~~~G~~i--------------swl~---------------------------  245 (514)
                      |-..       |  +-++         ....|.++              .|-+                           
T Consensus       157 ~~~h~~~~a~~p~g~k~~vg~~~~~~~q~~~g~~~~~~~~~~~~~~~~p~~~v~kg~~~~~~~~~g~~~al~pgd~ti~~  236 (375)
T PRK02654        157 DGVHFPVIASLPGGTKLGVGESVKIQLQTTEGKPFSQLLAEYPNSKLSPTWKVTKGEERVKVSEDGTIEALAPGDATIQG  236 (375)
T ss_pred             cCccceEEEEcCCCCcccccceeEEEEecCCCCcHHHHHhcCCccccCceeEEecCceeEEECCCCcEEEecCCceEEEE
Confidence            1100       0  0000         00001111              1111                           


Q ss_pred             --c---------ccCCCCCCCCc--hh---HHHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHH--
Q 010237          246 --P---------FVDGHPPLGWS--DT---FAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYF--  307 (514)
Q Consensus       246 --p---------~~~g~~~Lg~~--D~---lpy~ILPIL~~~s~fls~~i~~~~q~~dp~~k~~k~mm~~mPlmi~~f--  307 (514)
                        |         |+...+..|..  |.   |-..++-+..+++.|+++.++....+.+|   +|+.+..+.|+||.-+  
T Consensus       237 ~ipg~aa~~gflfi~alg~vg~~~~dg~i~wdi~~mi~~fg~sl~~~q~lsg~~~~~~~---qq~t~nkitpv~~sgmfl  313 (375)
T PRK02654        237 TIPGLAANSGFLFIKALGQVGFYDVDGAINWDILIMVLGFGVSLYLSQVLSGQGMPANP---QQSTANKITPVMFSGMFL  313 (375)
T ss_pred             eecceecccCceehHhhcccCccCCCCceeHHHHHHHHHhhhhhhhhHhhhcCCCCCCh---hHHHHHhhhhHHHhhhHh
Confidence              0         00000112222  11   22345556667889998877654444454   4667888999998543  


Q ss_pred             hhhhhhHhHHHHHhhhHHHHHHHHHHHHhcCCCCCCccch
Q 010237          308 ALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFS  347 (514)
Q Consensus       308 ~~~~PaGL~LYWitSNlfsiiQq~iL~k~~~~k~Pl~~~~  347 (514)
                      ++-+|+|+.+||++.|+|..+|+++|.|     .||.+..
T Consensus       314 ffplpagvllym~ianifq~~qt~~l~r-----eplpenl  348 (375)
T PRK02654        314 FFPLPAGVLLYMVIANIFQTLQTFLLSR-----EPLPENL  348 (375)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHhc-----CcChHHH
Confidence            4457999999999999999999999985     7887665

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=8.2e-22  Score=206.34  Aligned_cols=183  Identities=20%  Similarity=0.384  Sum_probs=157.6

Q ss_pred             CcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcC------HHHHHHHHHHHHHHcCCCCCcCch
Q 010237          118 PYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGD------QERIQLETARLYKLAGINPLAGCL  191 (514)
Q Consensus       118 ~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D------~qk~qqEm~kLYKk~gVNPl~GCL  191 (514)
                      +.+||++|+..|+.+|.+++|+.+.++|+.+|+..+.|+|.++.++.+.-      ....++|++++|++||++| ....
T Consensus        99 g~pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~~~l~~~~~v~~-~~l~  177 (372)
T KOG1239|consen   99 GLPWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQKLLVKKYGVKP-KQLA  177 (372)
T ss_pred             CCcchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHHHhhhhhcCCCc-chhh
Confidence            67999999999999999999999999999999999999999999988642      2245778999999999999 9888


Q ss_pred             HHHHHHHHHHHHHHHHHhhhh--hccccccceeccCCCCchhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHH
Q 010237          192 PTLATIPVWIGLYRALSNVAD--EGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLL  269 (514)
Q Consensus       192 P~LIQIPIFIgLY~vLr~~a~--~gl~t~gFLWi~DLs~PD~iaa~~~G~~iswl~p~~~g~~~Lg~~D~lpy~ILPIL~  269 (514)
                      -+++|.|+|++.|.+||.|+.  +++.+++++|++||+.+|                              |++++|+++
T Consensus       178 ~~v~q~~l~~sff~air~ma~~v~~f~t~g~~wf~dLt~~d------------------------------p~~ilp~it  227 (372)
T KOG1239|consen  178 LPVVQGPLFISFFMAIRVMAVPVPSFTTGGLLWFPDLTGPD------------------------------PLYILPGIT  227 (372)
T ss_pred             hhhhcchhHHHHHHHHHHhhccccccchhhHHhcccccccC------------------------------cchhhHHHH
Confidence            889999999999999999984  467778999999998876                              789999999


Q ss_pred             HHHHHHHHHHhccc-CCCCcchHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHhhhHHHHHHHHHHHH
Q 010237          270 VVSQYISVKIIQSS-QNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQK  335 (514)
Q Consensus       270 ~~s~fls~~i~~~~-q~~dp~~k~~k~mm~~mPlmi~~f~~~~PaGL~LYWitSNlfsiiQq~iL~k  335 (514)
                      .+++...++..... .........++.+..++|+++..++.++|++++.||+    |+++|..+++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~t~~~~~a~~~ywl----~s~~~~~vlr~  290 (372)
T KOG1239|consen  228 LATLTLFIELGAETGLSSSKLLPAMKSFIRILPLLSLASTMQFPSAIFVYWL----FSLVQGLVLRS  290 (372)
T ss_pred             HHHHHHHHHHHHHhhhhcccccchhHHHHHHhhhhhhhhhhhhhhhHHhhhh----hHHHHHHHhHH
Confidence            99988877764321 1122333457788899999999999999999999999    99999999764

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=1.5e-10  Score=122.06  Aligned_cols=239  Identities=21%  Similarity=0.233  Sum_probs=207.6

Q ss_pred             ccchhhhHHHHHHHHHHHHHhhhhhcccCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcCHH
Q 010237           90 NSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQE  169 (514)
Q Consensus        90 ~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D~q  169 (514)
                      ...|+..+...++..+..+.......|....++.++...|+++.+...|+...+..+..-|+.++|....+...+...+.
T Consensus         4 ~~~~~~~~~~~~~~~l~l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p   83 (372)
T KOG1239|consen    4 SNLWFFAISSLQEMRLFLLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRP   83 (372)
T ss_pred             cccCchhhhhhhhHHHhhhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCc
Confidence            56788888889998888888888888888899999999999999999999999999999999999999999999888765


Q ss_pred             --HHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccccceeccCCCCchhHhhhhcCCCccccccc
Q 010237          170 --RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPF  247 (514)
Q Consensus       170 --k~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFLWi~DLs~PD~iaa~~~G~~iswl~p~  247 (514)
                        .+|.++..+|+-.|++++++|++..+-|+..+..|++.+. ......+.++.|++.+..+...++..++..+.|..++
T Consensus        84 ~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~-~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~  162 (372)
T KOG1239|consen   84 VATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQ-KNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQ  162 (372)
T ss_pred             hhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhh-hHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHH
Confidence              8999999999999999999999999999999999999986 4444556788999988887767777788889999988


Q ss_pred             cCCCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHhhhHHH
Q 010237          248 VDGHPPLGWS-DTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLS  326 (514)
Q Consensus       248 ~~g~~~Lg~~-D~lpy~ILPIL~~~s~fls~~i~~~~q~~dp~~k~~k~mm~~mPlmi~~f~~~~PaGL~LYWitSNlfs  326 (514)
                      ...+.+.|+. +.+.+.+++..+.++.|+.++.|.-+....+.     ....++|-+..+..+..+.++..||+++++..
T Consensus       163 ~~l~~~~~v~~~~l~~~v~q~~l~~sff~air~ma~~v~~f~t-----~g~~wf~dLt~~dp~~ilp~it~~~~~~~~~~  237 (372)
T KOG1239|consen  163 KLLVKKYGVKPKQLALPVVQGPLFISFFMAIRVMAVPVPSFTT-----GGLLWFPDLTGPDPLYILPGITLATLTLFIEL  237 (372)
T ss_pred             HhhhhhcCCCcchhhhhhhcchhHHHHHHHHHHhhccccccch-----hhHHhcccccccCcchhhHHHHHHHHHHHHHH
Confidence            8888888998 98889999999999999999988744433321     25567788888888889999999999999999


Q ss_pred             HHHHHHHH
Q 010237          327 TAQQVWLQ  334 (514)
Q Consensus       327 iiQq~iL~  334 (514)
                      -.|+....
T Consensus       238 ~~~~~~~~  245 (372)
T KOG1239|consen  238 GAETGLSS  245 (372)
T ss_pred             HHHhhhhc
Confidence            99988776

>COG1422 Predicted membrane protein [Function unknown]

Probab=94.70  E-value=0.24  Score=48.77  Aligned_cols=89  Identities=16%  Similarity=0.124  Sum_probs=48.9

Q ss_pred             cchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhc-----CH---HHHHHH---HHHHHHHcCCCCC
Q 010237          119 YAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAG-----DQ---ERIQLE---TARLYKLAGINPL  187 (514)
Q Consensus       119 ~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~-----D~---qk~qqE---m~kLYKk~gVNPl  187 (514)
                      .+.-++|+++.+++=+.+- +-.+-.--..||+++|-++++.|++++.     |.   +|+|++   ++....+-=-   
T Consensus        44 ~~p~lvilV~avi~gl~~~-i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk---  119 (201)
T COG1422          44 LPPHLVILVAAVITGLYIT-ILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMK---  119 (201)
T ss_pred             cccHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            4455666666666554321 1122233458999999999999988752     32   234433   3333332100   


Q ss_pred             cCchHHHHHHHHHHHHHHHHHhhh
Q 010237          188 AGCLPTLATIPVWIGLYRALSNVA  211 (514)
Q Consensus       188 ~GCLP~LIQIPIFIgLY~vLr~~a  211 (514)
                      -.+-||+.++++.|-+|-=++...
T Consensus       120 ~qfkPM~~~~v~tI~~F~Wl~~~~  143 (201)
T COG1422         120 MQFKPMLYISVLTIPFFAWLRWFV  143 (201)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHH
Confidence            134477777776666665555543

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=93.92  E-value=1.3  Score=48.47  Aligned_cols=60  Identities=13%  Similarity=0.079  Sum_probs=37.7

Q ss_pred             cchHHHHHHHHHHHHHH--------HHHhhhhhhHhHHHHHhhhHHHHHHHHHHHHhcCCCCCCccchhhhhh
Q 010237          288 PNMKSSQALTNFLPLMI--------GYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKD  352 (514)
Q Consensus       288 p~~k~~k~mm~~mPlmi--------~~f~~~~PaGL~LYWitSNlfsiiQq~iL~k~~~~k~Pl~~~~~i~k~  352 (514)
                      ..+..+-.++-+|++++        +++.+++-+++.     +-+-+++...+++++|....+..+..+..++
T Consensus       225 k~m~~m~~~~Pim~~~~g~~~~~PaallLYWv~snlw-----tl~Qq~i~~~~l~~~~P~~~~~~~~~~~~~~  292 (429)
T PRK00247        225 KFLIVMAILAPIFPLSLGLTGPFPTAIALYWVANNLW-----TLIQNIIMYLILERKYPLTDEFKEHHAEQRA  292 (429)
T ss_pred             HHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHhhHH-----HHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence            34555555555555442        334556666642     3344556678999999999999988755444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	514
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 28/83 (33%)

Query: 373 QAEKLTTEGP------RPGEKF-KQIREQEARRRQQREEEKRKAA-----------EAAA 414
           QA++LT E P      R  E+  K+++E +A  +   +E + KA            E   
Sbjct: 76  QADRLTQE-PESIRKWR--EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132

Query: 415 KGNQTINGE------QEREASIL 431
           K N+  N        Q+ +A I+
Sbjct: 133 K-NKINNRIADKAFYQQPDADII 154

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 58/337 (17%), Positives = 102/337 (30%), Gaps = 109/337 (32%)

Query: 54  NSADGVKELLGVAERLLFTLADAAVSSSDAVTTTKQNSDWLSG-ITNVM-----ETVLKV 107
           NS + V E+L   ++LL+ +     S SD  +  K     +   +  ++     E  L V
Sbjct: 193 NSPETVLEML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 108 LKDGMSTLHVPYAYGFAI---ILLT---VIVKAATFPLTKKQVESSMAMRSLAP-QVKAI 160
           L +  +         F +   ILLT     V       T   +       +L P +VK++
Sbjct: 250 LLNVQNAKAWNA---FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 161 QERYAGDQERIQLETARLYKLA-GINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEG 219
             +Y             L +     NP              + +                
Sbjct: 307 LLKYLD------CRPQDLPREVLTTNPRR------------LSI---------------- 332

Query: 220 FFWIPSLAGPTTIAAR-QNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVK 278
                       IA   ++G                 W D + ++    L          
Sbjct: 333 ------------IAESIRDG--------------LATW-DNWKHVNCDKLT--------T 357

Query: 279 IIQSSQNN-DPN-MKSSQALTNFLPLMIGYFALSV--PSG-LSLYWFTNNLLSTAQQVWL 333
           II+SS N  +P   +       F  L +  F  S   P+  LSL W   +++ +   V +
Sbjct: 358 IIESSLNVLEPAEYRK-----MFDRLSV--FPPSAHIPTILLSLIW--FDVIKSDVMVVV 408

Query: 334 QKFGG----AKDPMKQFSDIIKDERLDINKSVPGLSS 366
            K        K P K+ +  I    L++   +    +
Sbjct: 409 NKLHKYSLVEKQP-KESTISIPSIYLELKVKLENEYA 444

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00