Citrus Sinensis ID: 010307


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510---
MGLASASTATDGMQLCIFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVVEKGKDSDAIWRIDALRKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVLRLSPNALSSGVNSWSYIRRGSTSSHFVSGSALTHSGPVSEQIYHSSDTSPVGNNINRVTRALQHGKWYKGKDGFLVTDIWGVDVGSLVCATPTVWLQQTEEAMYLCPYQFKSLTLILLIPVSSILNGEQGVALVKQQLLENASLKILKVEEKLSKGWGGENAYHVSGYRYLLVDGDRNISRASPPGKVTTLAKESLLALSKLRDEVDLEKSRAKRDNAGCEKDLEVSIRAKNNAWAIARITGGKELYMVLEKASETLLYASDAVEKFSNRYCNGAFSLD
ccccccccccccEEEEEEccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHccccccccccEEEEccEEEEEEEEcccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEcccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccEEEEcccccEEEEEEEEccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEccccccccccccccccccHHHHHHHHHccHHHHHHHHHHccccccccccccEEEEEEcccEEEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHHHHcccccccc
cccccccccccHcEEEEEccccccccccHccEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEccEEEEEEEccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEEEccEEEEccccHHHHHHHHHHHHHHHcHHHccHHcccccccccccccccccccccccccccccHHHcccccccccccccccEEEEccccccccccccEEEEcccccccccccccccEEEEcccccHEEEEEEEcccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEccccccEcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccEEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHcccEEEcc
mglasastatdgMQLCIFDLrrgqnegqELDKILfffpadlpfstqlsvIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVVEKGKDSDAIWRIDALRKVLKEVHSLFVMFYGSIRAMlekdpsgglirshlYPFIMdylsdfpvgkklqlpsFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDscagnsscySMILFHDLLvsttlspddtiNLFTYAVLRLspnalssgvnswsyirrgstsshfvsgsalthsgpvseqiyhssdtspvgnnINRVTRALqhgkwykgkdgflvtdiwgvdvgslvcatptvwLQQTEEamylcpyqfkslTLILLIpvssilngEQGVALVKQQLLENASLKILKVEEKlskgwggenayhvSGYRYLlvdgdrnisrasppgkvTTLAKESLLALSKLRDEVDleksrakrdnagcekDLEVSIRAKNNAWAIARITGGKELYMVLEKASETLLYASDAVEKFSnrycngafsld
mglasastatdgmqLCIFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVVEKGKDSDAIWRIDALRKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVLRLSPNALSSGVNSWSYIRRGSTSSHFVSGSALTHSGPVSEQIYhssdtspvgnnINRVTRALQHGKWYKGKDGFLVTDIWGVDVGSLVCATPTVWLQQTEEAMYLCPYQFKSLTLILLIPVSSILNGEQGVALVKQQLLENASLKILKVeeklskgwggenayHVSGYRYLLVDGDRNIsrasppgkvttlAKESLLAlsklrdevdleksrakrdnagcekdlevsiraknnawAIARITGGKELYMVLEKASETLLYASDAVEKFSNRYCNGAFSLD
MGLASASTATDGMQLCIFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVVEKGKDSDAIWRIDALRKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVLRLSPNALSSGVNSWSYIRRGSTSSHFVSGSALTHSGPVSEQIYHSSDTSPVGNNINRVTRALQHGKWYKGKDGFLVTDIWGVDVGSLVCATPTVWLQQTEEAMYLCPYQFKSLTLILLIPVSSILNGEQGVALVKQQLLENASLKILKVEEKLSKGWGGENAYHVSGYRYLLVDGDRNISRASPPGKVttlakesllalsklRDEVDLEKSRAKRDNAGCEKDLEVSIRAKNNAWAIARITGGKELYMVLEKASETLLYASDAVEKFSNRYCNGAFSLD
************MQLCIFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVVEKGKDSDAIWRIDALRKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVLRLSPNALSSGVNSWSYIRR*********************************NNINRVTRALQHGKWYKGKDGFLVTDIWGVDVGSLVCATPTVWLQQTEEAMYLCPYQFKSLTLILLIPVSSILNGEQGVALVKQQLLENASLKILKVEEKLSKGWGGENAYHVSGYRYLLVDGDR*********************************************DLEVSIRAKNNAWAIARITGGKELYMVLEKASETLLYASDAVEKFSNRYCNGA****
*************QLCIFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVVEKGKDSDAIWRIDALRKVLKEVHSLFVMFYGSIRAMLE*****GLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVLRL*************************************************************HGKWYKGKDGFLVTDIWGVDVGSLVCATPTVWLQQTEEAMYLCPYQFKSLTLILLIPVSSILNGEQGVALVKQQLLENASLKIL*******************GYRYLLVDG**************************LRDEVDLEKSRAKRDNAGCEKDLEVSIRAKNNAWAIARITGGKELYMVLEKASETLLYASDAVEKFSNRYCNGAFSLD
*********TDGMQLCIFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVVEKGKDSDAIWRIDALRKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVLRLSPNALSSGVNSWSYIRRGSTSSHFVSGSALTHSGPVSEQIYHSSDTSPVGNNINRVTRALQHGKWYKGKDGFLVTDIWGVDVGSLVCATPTVWLQQTEEAMYLCPYQFKSLTLILLIPVSSILNGEQGVALVKQQLLENASLKILKVEEKLSKGWGGENAYHVSGYRYLLVDGDRNISRASPPGKVTTLAKESLLALSKLRDEVDLEKSRAKRDNAGCEKDLEVSIRAKNNAWAIARITGGKELYMVLEKASETLLYASDAVEKFSNRYCNGAFSLD
********ATDGMQLCIFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVVEKGKDSDAIWRIDALRKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVLRLSPNALSSGVNSWSYI**************LTHSGPVSEQIYHSSDTSPVGNNINRVTRALQHGKWYKGKDGFLVTDIWGVDVGSLVCATPTVWLQQTEEAMYLCPYQFKSLTLILLIPVSSILNGEQGVALVKQQLLENASLKILKVEEKLSKGWGGENAYHVSGYRYLLVDGDRNISRASPPGKVTTLAKESLLALSKLRDEVDLEKSRAKRDNAGCEKDLEVSIRAKNNAWAIARITGGKELYMVLEKASETLLYASDAVEKFSNRYCNGAFSLD
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MGLASASTATDGMQLCIFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVVEKGKDSDAIWRIDALRKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVLRLSPNALSSGVNSWSYIRRGSTSSHFVSGSALTHSGPVSEQIYHSSDTSPVGNNINRVTRALQHGKWYKGKDGFLVTDIWGVDVGSLVCATPTVWLQQTEEAMYLCPYQFKSLTLILLIPVSSILNGEQGVALVKQQLLENASLKILKVEEKLSKGWGGENAYHVSGYRYLLVDGDRNISRASPPGKVTTLAKESLLALSKLRDEVDLEKSRAKRDNAGCEKDLEVSIRAKNNAWAIARITGGKELYMVLEKASETLLYASDAVEKFSNRYCNGAFSLD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query513 2.2.26 [Sep-21-2011]
A7RJI7459 Vacuolar fusion protein C N/A no 0.528 0.590 0.262 1e-20
Q8C1Y8480 Vacuolar fusion protein C yes no 0.851 0.910 0.218 1e-20
Q0VD30480 Vacuolar fusion protein C yes no 0.849 0.908 0.216 6e-20
P86791482 Vacuolar fusion protein C yes no 0.851 0.906 0.212 1e-19
P86790482 Vacuolar fusion protein C yes no 0.851 0.906 0.212 1e-19
Q54IQ5445 Vacuolar fusion protein C yes no 0.807 0.930 0.209 1e-18
Q5ZLN2476 Vacuolar fusion protein C yes no 0.423 0.455 0.260 4e-17
Q28HU2471 Vacuolar fusion protein C yes no 0.851 0.927 0.207 9e-17
Q7T102471 Vacuolar fusion protein C N/A no 0.421 0.458 0.271 1e-15
Q803R2480 Vacuolar fusion protein C yes no 0.440 0.470 0.256 2e-15
>sp|A7RJI7|CCZ1_NEMVE Vacuolar fusion protein CCZ1 homolog OS=Nematostella vectensis GN=v1g238755 PE=3 SV=1 Back     alignment and function desciption
 Score =  102 bits (253), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 135/301 (44%), Gaps = 30/301 (9%)

Query: 3   LASASTATDGMQLCIFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRI 62
           +A+  T    +   IF+   G  EG+E +KI+ + P +     ++  IGL E L+ FT  
Sbjct: 1   MAAMKTTPGLVNFFIFNSTYGPREGEEHEKIILYIPTEEDIDRKIKTIGLCEALVKFTET 60

Query: 63  FSPEAACEIIEAERHSHVFYEAETDIWMVMVV---------EKGKDSDAIWRIDALRK-- 111
           F+P+  CE +  ++   +FY+ E D WM+M +         + GK++      D L    
Sbjct: 61  FAPDKPCESLHTQKSRQIFYQPEPDFWMIMTISIPFSEKIAKDGKNTIEYHYDDVLDNVL 120

Query: 112 --VLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDC 169
             VLK+ + +F +F G    + E      L +   Y F + YL      + L   SF D 
Sbjct: 121 DAVLKQSYKMFKLFNGPFNYLSETYGREALKKRSEY-FFLSYL------QTLNFSSF-DL 172

Query: 170 LKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLF 229
           L     +Q L + +   +++QS V++++        Y+  L+ D LV + L  +D   L+
Sbjct: 173 LDIFAGIQFLPLDKNTFLKIQSFVNLIEHTFSQIK-YTAFLYSDKLVWSGLEQEDMRILY 231

Query: 230 TYAVLRLSPNALSSGV---NSWSYIRRGSTSSH--FVSGSALTHSGPVSEQ---IYHSSD 281
            Y V  L P  + S +   +S  Y+     S H  FV+G       P   +   I+ ++D
Sbjct: 232 KYLVTSLFPATIDSELADRSSQGYVVIQPKSHHGRFVTGPPDLKDIPTPRKPPRIFVNTD 291

Query: 282 T 282
           T
Sbjct: 292 T 292





Nematostella vectensis (taxid: 45351)
>sp|Q8C1Y8|CCZ1_MOUSE Vacuolar fusion protein CCZ1 homolog OS=Mus musculus GN=Ccz1 PE=1 SV=1 Back     alignment and function description
>sp|Q0VD30|CCZ1_BOVIN Vacuolar fusion protein CCZ1 homolog OS=Bos taurus GN=CCZ1 PE=2 SV=1 Back     alignment and function description
>sp|P86791|CCZ1_HUMAN Vacuolar fusion protein CCZ1 homolog OS=Homo sapiens GN=CCZ1 PE=1 SV=1 Back     alignment and function description
>sp|P86790|CCZ1B_HUMAN Vacuolar fusion protein CCZ1 homolog B OS=Homo sapiens GN=CCZ1B PE=1 SV=1 Back     alignment and function description
>sp|Q54IQ5|CCZ1_DICDI Vacuolar fusion protein CCZ1 homolog OS=Dictyostelium discoideum GN=DDB_G0288589 PE=3 SV=1 Back     alignment and function description
>sp|Q5ZLN2|CCZ1_CHICK Vacuolar fusion protein CCZ1 homolog OS=Gallus gallus GN=CCZ1 PE=2 SV=1 Back     alignment and function description
>sp|Q28HU2|CCZ1_XENTR Vacuolar fusion protein CCZ1 homolog OS=Xenopus tropicalis GN=ccz1 PE=2 SV=1 Back     alignment and function description
>sp|Q7T102|CCZ1_XENLA Vacuolar fusion protein CCZ1 homolog OS=Xenopus laevis GN=ccz1 PE=2 SV=1 Back     alignment and function description
>sp|Q803R2|CCZ1_DANRE Vacuolar fusion protein CCZ1 homolog OS=Danio rerio GN=ccz1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query513
225424418514 PREDICTED: vacuolar fusion protein CCZ1 1.0 0.998 0.789 0.0
255557247513 conserved hypothetical protein [Ricinus 1.0 1.0 0.791 0.0
359472555527 PREDICTED: vacuolar fusion protein CCZ1 1.0 0.973 0.770 0.0
224101919524 predicted protein [Populus trichocarpa] 0.994 0.973 0.771 0.0
356513030499 PREDICTED: vacuolar fusion protein CCZ1 0.972 1.0 0.749 0.0
356524626499 PREDICTED: vacuolar fusion protein CCZ1 0.970 0.997 0.751 0.0
357521401545 hypothetical protein MTR_8g105900 [Medic 0.998 0.939 0.706 0.0
449449030493 PREDICTED: vacuolar fusion protein CCZ1 0.959 0.997 0.725 0.0
222424098497 AT1G80910 [Arabidopsis thaliana] 0.964 0.995 0.708 0.0
6503303513 F23A5.27 [Arabidopsis thaliana] 0.964 0.964 0.706 0.0
>gi|225424418|ref|XP_002285048.1| PREDICTED: vacuolar fusion protein CCZ1 homolog isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  852 bits (2201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/514 (78%), Positives = 459/514 (89%), Gaps = 1/514 (0%)

Query: 1   MGLASASTA-TDGMQLCIFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITF 59
           MGL+SA+T   +G Q CIFDLRRGQ+EGQELDKILFF+PADLPFSTQLSVIGLSEGLITF
Sbjct: 1   MGLSSANTVVNEGFQFCIFDLRRGQHEGQELDKILFFYPADLPFSTQLSVIGLSEGLITF 60

Query: 60  TRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVVEKGKDSDAIWRIDALRKVLKEVHSL 119
           TRIFSPEAACE+IEAERHSHVF++AE DIWMVMVVEK K+SDAIWRIDALR+VLKEVHSL
Sbjct: 61  TRIFSPEAACEVIEAERHSHVFHQAEPDIWMVMVVEKSKESDAIWRIDALRRVLKEVHSL 120

Query: 120 FVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQML 179
           FVMF+GSIR++L+K+PSG L+RSHLY FIMDYLSDF VGKK++LPSFRDCLKERGTVQML
Sbjct: 121 FVMFHGSIRSLLDKEPSGELVRSHLYAFIMDYLSDFLVGKKIKLPSFRDCLKERGTVQML 180

Query: 180 TMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVLRLSPN 239
           T+GREAA+EVQSLV VL+SCAGN+ CYS++LF DLLVSTTLSPDDTINLFTYAVLRL+PN
Sbjct: 181 TVGREAALEVQSLVRVLESCAGNAPCYSLVLFQDLLVSTTLSPDDTINLFTYAVLRLAPN 240

Query: 240 ALSSGVNSWSYIRRGSTSSHFVSGSALTHSGPVSEQIYHSSDTSPVGNNINRVTRALQHG 299
           AL S  +SWSY+R+G+T+S   + S +  SG VSEQ Y S DTSP G   + V R LQH 
Sbjct: 241 ALLSRASSWSYLRKGNTASQIAAASVMASSGSVSEQFYGSRDTSPHGGERSHVVRPLQHN 300

Query: 300 KWYKGKDGFLVTDIWGVDVGSLVCATPTVWLQQTEEAMYLCPYQFKSLTLILLIPVSSIL 359
           KWYKG DGFLVTDIWG +VGS+V ATPTV L QTEE MYLC YQ KSLTLILL P+SSIL
Sbjct: 301 KWYKGTDGFLVTDIWGPEVGSMVSATPTVLLHQTEERMYLCVYQHKSLTLILLFPISSIL 360

Query: 360 NGEQGVALVKQQLLENASLKILKVEEKLSKGWGGENAYHVSGYRYLLVDGDRNISRASPP 419
           NGEQG+++VKQQ++ENASLK+LKVEEKLSKGWGGENAYHV GYRYLLVDGDRN+SRASPP
Sbjct: 361 NGEQGISVVKQQIVENASLKMLKVEEKLSKGWGGENAYHVGGYRYLLVDGDRNVSRASPP 420

Query: 420 GKVTTLAKESLLALSKLRDEVDLEKSRAKRDNAGCEKDLEVSIRAKNNAWAIARITGGKE 479
           GKVTTL KESL++LS LR+E+DLEKSRAK D+   EKDLE+ IRAKNNAW IAR T GKE
Sbjct: 421 GKVTTLTKESLISLSNLREEIDLEKSRAKWDDPDHEKDLEICIRAKNNAWVIARTTRGKE 480

Query: 480 LYMVLEKASETLLYASDAVEKFSNRYCNGAFSLD 513
           LYMVLEKA+ETLL+ASDA+EKFSNRYC+GAFSLD
Sbjct: 481 LYMVLEKANETLLFASDAIEKFSNRYCSGAFSLD 514




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557247|ref|XP_002519654.1| conserved hypothetical protein [Ricinus communis] gi|223541071|gb|EEF42627.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359472555|ref|XP_003631164.1| PREDICTED: vacuolar fusion protein CCZ1 homolog isoform 2 [Vitis vinifera] gi|297737604|emb|CBI26805.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224101919|ref|XP_002312475.1| predicted protein [Populus trichocarpa] gi|222852295|gb|EEE89842.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356513030|ref|XP_003525217.1| PREDICTED: vacuolar fusion protein CCZ1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356524626|ref|XP_003530929.1| PREDICTED: vacuolar fusion protein CCZ1 homolog-like [Glycine max] Back     alignment and taxonomy information
>gi|357521401|ref|XP_003630989.1| hypothetical protein MTR_8g105900 [Medicago truncatula] gi|355525011|gb|AET05465.1| hypothetical protein MTR_8g105900 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449449030|ref|XP_004142268.1| PREDICTED: vacuolar fusion protein CCZ1 homolog [Cucumis sativus] gi|449510583|ref|XP_004163706.1| PREDICTED: vacuolar fusion protein CCZ1 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|222424098|dbj|BAH20009.1| AT1G80910 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|6503303|gb|AAF14679.1|AC011713_27 F23A5.27 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query513
TAIR|locus:2025782497 AT1G80910 "AT1G80910" [Arabido 0.964 0.995 0.683 3.1e-186
TAIR|locus:2200547515 AT1G16020 "AT1G16020" [Arabido 0.976 0.972 0.643 2.8e-176
UNIPROTKB|Q0VD30480 CCZ1 "Vacuolar fusion protein 0.413 0.441 0.288 6.1e-20
UNIPROTKB|P86790482 CCZ1B "Vacuolar fusion protein 0.415 0.441 0.289 1e-19
UNIPROTKB|P86791482 CCZ1 "Vacuolar fusion protein 0.415 0.441 0.289 1e-19
MGI|MGI:2141070480 Ccz1 "CCZ1 vacuolar protein tr 0.415 0.443 0.285 1.7e-19
UNIPROTKB|Q5ZLN2476 CCZ1 "Vacuolar fusion protein 0.415 0.447 0.273 2.1e-19
ZFIN|ZDB-GENE-040426-698506 ccz1 "CCZ1 vacuolar protein tr 0.411 0.416 0.277 1.5e-17
DICTYBASE|DDB_G0288589445 DDB_G0288589 "DUF2049 family p 0.426 0.492 0.256 6.9e-17
FB|FBgn0035470485 CG14980 [Drosophila melanogast 0.471 0.498 0.241 1.5e-12
TAIR|locus:2025782 AT1G80910 "AT1G80910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1806 (640.8 bits), Expect = 3.1e-186, P = 3.1e-186
 Identities = 352/515 (68%), Positives = 419/515 (81%)

Query:     1 MGLASASTATDGMQLCIFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFT 60
             MG+AS S+ T+ ++LC+FDLRRGQ+EGQELDKILFF+P DL FSTQLSVIGLSEGLITFT
Sbjct:     1 MGMASMSSGTESLRLCVFDLRRGQHEGQELDKILFFYPPDLTFSTQLSVIGLSEGLITFT 60

Query:    61 RIFSPEAACEIIEAERHSHVFYEAETDIWMVMVVEKGKDSDAIWRIDALRKVLKEVHSLF 120
             R+FSPEAACE+IEAERHSHVFYEAE DIWMVM+VEK K+ +A+WRIDALR+VLKEVHSLF
Sbjct:    61 RLFSPEAACEVIEAERHSHVFYEAEPDIWMVMIVEKNKEIEAVWRIDALRRVLKEVHSLF 120

Query:   121 VMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLT 180
             VMF GSIRA+LEK+P+GGL+RSHLYPFI DYL+D  VGKK QLPSFRD LKERGTVQMLT
Sbjct:   121 VMFQGSIRALLEKEPTGGLVRSHLYPFITDYLNDLFVGKKQQLPSFRDTLKERGTVQMLT 180

Query:   181 MGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVLRLSPNA 240
             + R+AA+EVQSLV VLDSCAG   C+S+ILFHDLLVSTTLSPDDT++LF ++V+RL+ NA
Sbjct:   181 LARDAALEVQSLVGVLDSCAGTVRCHSVILFHDLLVSTTLSPDDTVDLFAFSVMRLTTNA 240

Query:   241 LSSGVNSWSYIRRGSTSSHFVSGSALTHSGPVSEQIYHSSDTSPVGN--NINRVTRALQH 298
             LSSG +SWSY+R+GS S    S S  T   P+      S  T P GN  +  RV R LQH
Sbjct:   241 LSSGTSSWSYLRKGSGSPQISSRS--TTVPPLG-----SGGTLPSGNGSSTGRVIRPLQH 293

Query:   299 GKWYKGKDGFLVTDIWGVDVGSLVCATPTVWLQQTEEAMYLCPYQFKSLTLILLIPVSSI 358
              KW KGKDGFLVTDIWG+D      ATPT+ +Q+T+E+ YL  YQ+KSLTL+LL+P+++I
Sbjct:   294 DKWSKGKDGFLVTDIWGLD------ATPTILIQKTQESFYLLTYQYKSLTLVLLVPIAAI 347

Query:   359 LNGEQGVALVKQQLLENASLKILKVEEKLSKGWGGENAYHVSGYRYLLVDGDRNISRASP 418
             +NGE  ++ VKQQ++ENAS KILKVEEKLSKGWGGENAYHVSGYRYLLVD D  +SRASP
Sbjct:   348 VNGELDISFVKQQVIENASTKILKVEEKLSKGWGGENAYHVSGYRYLLVDNDMEVSRASP 407

Query:   419 PGKVXXXXXXXXXXXXXXRDEVDLEKSRAKRDNAGCEKDLEVSIRAKNNAWAIARITGGK 478
             PGKV              R+EVD EK+R+K+     EKD+E+ IRAKNN W IAR+  GK
Sbjct:   408 PGKVATLAKESLLALNKLREEVDTEKNRSKQ-----EKDMEICIRAKNNTWVIARLNRGK 462

Query:   479 ELYMVLEKASETLLYASDAVEKFSNRYCNGAFSLD 513
             ELYM LEKASETLL A+D+V++FSNRYC+GAF +D
Sbjct:   463 ELYMALEKASETLLDATDSVQRFSNRYCSGAFPMD 497




GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2200547 AT1G16020 "AT1G16020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VD30 CCZ1 "Vacuolar fusion protein CCZ1 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P86790 CCZ1B "Vacuolar fusion protein CCZ1 homolog B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P86791 CCZ1 "Vacuolar fusion protein CCZ1 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2141070 Ccz1 "CCZ1 vacuolar protein trafficking and biogenesis associated" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZLN2 CCZ1 "Vacuolar fusion protein CCZ1 homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-698 ccz1 "CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288589 DDB_G0288589 "DUF2049 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0035470 CG14980 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
gw1.VIII.987.1
hypothetical protein (524 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query513
pfam08217466 pfam08217, DUF1712, Fungal domain of unknown funct 1e-154
>gnl|CDD|219750 pfam08217, DUF1712, Fungal domain of unknown function (DUF1712) Back     alignment and domain information
 Score =  446 bits (1150), Expect = e-154
 Identities = 168/505 (33%), Positives = 246/505 (48%), Gaps = 48/505 (9%)

Query: 15  LCIFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEA 74
             +F+   GQ EG+E  KILF+ P D+  + +LS IGL E + TFTR FSPE  CEIIE 
Sbjct: 1   FVVFNPSFGQKEGEEHKKILFYHPFDISLNEKLSKIGLIEAIWTFTRTFSPEDPCEIIET 60

Query: 75  ERHSHVFYEAETDIWMVMVVE---KGKDSDAIWRIDALRKVLKEVHSLFVMFYGSIRAML 131
           E+ + +FYE E D WMV+VVE     K+   +      R VLK+ +  F +F GS  ++L
Sbjct: 61  EKTTQIFYEPEPDFWMVLVVEVEIDNKEIPNVIEYRIYRAVLKQCYQFFRLFNGSFSSLL 120

Query: 132 EKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQS 191
           E      L R  L   + ++   F   + LQLP   D L   G+VQ L + +E  + +Q 
Sbjct: 121 E-----DLERELLTDRLNEFFVPF--WQDLQLPPECDLLDMLGSVQNLPLDKENYLGIQG 173

Query: 192 LVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVLRLSPNALSSGVNSWSYI 251
            +   DS  G+  C+S  L+HD LV  TLS  DT  L+ Y +  L P    S V SW+ I
Sbjct: 174 FIRNFDSTFGSLPCHSNWLYHDHLVYGTLSSHDTRILYNYTLPILFPYDAISEVGSWTGI 233

Query: 252 RRGSTSSHFVSGSALTHSGPVSEQIYHSSDTSPVGNNINRVTRALQHGKWYKGKDGFL-- 309
           R         S S   +  P       SS+    G++  ++           GKDGFL  
Sbjct: 234 R--------NSPSLFMNYTPSGRVRSGSSEN---GDSKAKLD----------GKDGFLIS 272

Query: 310 -VTDIWGVDVGSLVCATPTVWLQQTEEAMYLCPYQFKS-LTLILLIPVSSILNGEQGVAL 367
            +  ++  +                ++   L  Y  K  LTL L  P    +N +  +  
Sbjct: 273 PLAKVFLPESYL------PFNTDDEQKYYNLLFYYAKDVLTLCLFDPAFDKINEQDYLKE 326

Query: 368 VKQQLLENASLKILKVEEKLSKGWGGENAYHVSGYRYLLVDGDRNISRASPPGKVTTLAK 427
           +  QL    S   L +EE LSK   GENAY  S ++YL  + D    R+S P K T+LAK
Sbjct: 327 LDAQLYPQLSTLALDIEEHLSKEANGENAYDDSSFKYLYFNKDNLKIRSSIPRKKTSLAK 386

Query: 428 ESLLALSKLR--DEVDLEKSRAKRDNAGCEKDLEVSIRAKNNAWAIARITGGKELYMVLE 485
            S L+ + L+  +++  + SR+K        D E+ ++  NN W + R T G+ELY++L+
Sbjct: 387 SSGLSRNVLKLIEDITTDFSRSKAKA-----DEEIILKTLNNGWLVYRKTNGRELYIILK 441

Query: 486 KASETLLYASDAVEKFSNRYCNGAF 510
             S TLL  ++ + +   R+ NG F
Sbjct: 442 NWSSTLLDLTEELGRDVTRWWNGIF 466


The function of this family of proteins is unknown. Length = 466

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 513
KOG2622510 consensus Putative myrosinase precursor [Defense m 100.0
PF08217604 DUF1712: Fungal domain of unknown function (DUF171 100.0
PF03164415 Mon1: Trafficking protein Mon1; InterPro: IPR00435 98.79
KOG0997523 consensus Uncharacterized conserved protein Sand [ 97.48
KOG2622510 consensus Putative myrosinase precursor [Defense m 97.37
PF04099142 Sybindin: Sybindin-like family ; InterPro: IPR0072 95.27
KOG3368140 consensus Transport protein particle (TRAPP) compl 90.46
>KOG2622 consensus Putative myrosinase precursor [Defense mechanisms] Back     alignment and domain information
Probab=100.00  E-value=8.8e-108  Score=825.02  Aligned_cols=482  Identities=53%  Similarity=0.814  Sum_probs=451.0

Q ss_pred             CCCCCCCCCCCC-----------eE-EEEEcCCCCCCCccccCcEEEEcCCCCChhhhhhhhhHHHHHHHhhhccCCCcc
Q 010307            1 MGLASASTATDG-----------MQ-LCIFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAA   68 (513)
Q Consensus         1 ~~~~~~~~~~~~-----------~~-f~Ifnp~~g~~Eg~e~~kILfY~P~~~~~n~ql~~IGL~egiv~Ft~~Fs~~~~   68 (513)
                      |||+|+.++.|+           |. ||||||++|++||+|++|||||||++...++|++.|||+||+|+||++|+|+.+
T Consensus         1 m~~as~~sg~~~scsq~~qF~~~L~~ffv~~pr~G~~EGqE~nkIlffhP~~~~~~~q~~viGl~EalV~FTr~Fspe~~   80 (510)
T KOG2622|consen    1 MAMASMSSGNEPSCSQEKQFPPALRSFFVFDPRRGQREGQELNKILFFHPNDLEFSTQLSVIGLSEALVTFTRLFSPEAA   80 (510)
T ss_pred             CcccccCCCCCccccccccccHHHHHHhhcCcccCcccchhhceeEEECCCccchhhheehhhHHHHHHHHHHhcCcchh
Confidence            899999998888           65 899999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEecceEEEEEEecCCeEEEEEEEcCCCC--------------CchhhHHHHHHHHHHHHHHHHHhccchhHhhhcC
Q 010307           69 CEIIEAERHSHVFYEAETDIWMVMVVEKGKDS--------------DAIWRIDALRKVLKEVHSLFVMFYGSIRAMLEKD  134 (513)
Q Consensus        69 ~~~I~T~k~~~v~~e~Ep~~wm~~~v~k~~~~--------------~~~i~~~~l~~~L~~~Y~~F~Lf~Gsf~~~l~~~  134 (513)
                      |+++|+++++++++++||++||||++++.+.-              +.+.-..+++++|++||+||+||+|+|+..... 
T Consensus        81 ~~v~e~e~~~~ff~e~e~~~wmVmvv~~~~~~~~~~~i~k~~~~~~e~~ll~~~~~s~lr~~y~m~~lF~Gtf~~s~~~-  159 (510)
T KOG2622|consen   81 CEVIEAERHSHFFYEAEPDIWMVMVVEKNKEIEAQWRIDKLRRVLKEVHLLFVMFSSSLRALYEMEPLFTGTFSRSHLY-  159 (510)
T ss_pred             hhhhhhcccccccccCCCceEEEEEEeeCChhheeeecchhHHHhhhhHHHHHHHHHHHHHHHHhchhhcCCcchhhcC-
Confidence            99999999999999999999999999865421              234457889999999999999999999988875 


Q ss_pred             CChhHHHHhhhHHHHHhhhcCcCCcccCCCCCCchhhccCCcceeccCchhHHHHHHHHHHHHhhhCCCceEEEEEecCc
Q 010307          135 PSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDL  214 (513)
Q Consensus       135 ~~~~~L~~~L~~F~~~yl~~~~~~~~l~l~~~~d~l~~~~gi~~lpl~k~~~L~iqs~in~l~~~f~~~i~~~~~Ly~d~  214 (513)
                      +....+++||+.||.+|++...+.       .||.++.++||+||||++.+||+||+|||.++++++ .+||++|||+|+
T Consensus       160 ~~I~~~keRLdfFf~kylqll~~~-------~~dlLd~~GgV~fl~l~~~tyL~VqSlv~~l~e~~~-v~~~smfLyqD~  231 (510)
T KOG2622|consen  160 PFITDYKERLDFFFGKYLQLLHFR-------SCDLLDERGGVQFLTLARDTYLEVQSLVNVLDECAG-VRCHSMFLYQDL  231 (510)
T ss_pred             chHHHHHHHHHHHHHhhccccccc-------ccchhhhcCCEEEEEcCcchhHHHHHHHHHHHHhhC-hhhhhhhhhhhh
Confidence            678899999999999999976555       789999999999999999999999999999999999 999999999999


Q ss_pred             ccccCCCchhHHHHHHHHhhccCCCCcCCCCCcccccccCCCccccccCCCcCCCCCcccccccCCCCCCC--CCccccc
Q 010307          215 LVSTTLSPDDTINLFTYAVLRLSPNALSSGVNSWSYIRRGSTSSHFVSGSALTHSGPVSEQIYHSSDTSPV--GNNINRV  292 (513)
Q Consensus       215 Li~S~L~~~d~~~Ly~YL~~~l~p~~~~~e~~~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~  292 (513)
                      |||++|+++||.+||+||+++|+|+++++|+++|||+|||..++..       +.++..+.|+|+.+.+|.  |++..++
T Consensus       232 Lv~t~Ls~dD~~~Lf~ylt~~L~p~~lsp~~~~~~~~~kGr~s~~~-------s~~st~ap~lG~~~t~~~~~~s~~g~~  304 (510)
T KOG2622|consen  232 LVSTTLSQDDTVDLFKYLTMRLTPRALSPETSSWSYLRKGRGSPII-------SSRSTNAPHLGSFLTLPSHNGSDQGTV  304 (510)
T ss_pred             hheeccCcccHHHHHHHHHhhccccccCCCccchhhhhcCCCCCCc-------ccCCCCCcccccccccccccCCccccc
Confidence            9999999999999999999999999999999999999999854444       344567788999988774  4668899


Q ss_pred             cccccccccccCCCceeeecccCccCCCcccCCCEEEeccCCceeEEEEEeccCcEEEEEeeCCcccchhhhHHHHHHHH
Q 010307          293 TRALQHGKWYKGKDGFLVTDIWGVDVGSLVCATPTVWLQQTEEAMYLCPYQFKSLTLILLIPVSSILNGEQGVALVKQQL  372 (513)
Q Consensus       293 ~~~~~~~~~~~~~~G~~~t~~~~~~~~~~~~~~P~V~l~~~~e~~~L~vY~~~~~tl~l~i~~~~~~~~~~~~~~l~~~L  372 (513)
                      +||+|.++|-++++||+.|+.|+++      .+|.|+.+...+++|+++|+.++.|++++.+...+++++..+.+.++|.
T Consensus       305 ~~~~~~d~~~~~~~~f~~Td~~~~e------~~~~il~~~~~~~~~~~~~a~~s~tlv~~rrl~~iV~~~L~i~~s~~~~  378 (510)
T KOG2622|consen  305 IRPLQPDKWCKGKDGFLNTDIWGLE------ALPTILYQATQEAVYLLIYASKSLTLVLLRRLDAIVNGQLTISASKQQV  378 (510)
T ss_pred             ccccCCCceeeeccceeeeeeeccc------cccchhhhhhhhHHHHHhhcccCcceeeeehhhhhcCcceeehhhhHHH
Confidence            9999999999999999999999988      5799999988999999999999999999999999999987888999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCceeEEEEcCcccccccCCCCCcccCCHHHHHHHHHHHHHHHHHhhhhccCCC
Q 010307          373 LENASLKILKVEEKLSKGWGGENAYHVSGYRYLLVDGDRNISRASPPGKVTTLAKESLLALSKLRDEVDLEKSRAKRDNA  452 (513)
Q Consensus       373 ~~~~s~~i~~~~~~~~~~~~~~~~~~~~~~ryiy~n~~~~a~r~s~~~~~~~l~~e~l~~l~~l~~ei~~~~s~~~~~~~  452 (513)
                      .++++..|.+.++..+.+|.+.||+|.++|||+..++..-++|++|+++++++.||  .++|+|++|++++++|++    
T Consensus       379 ~~n~~~r~~k~ee~p~f~~iyfN~~h~s~~~~ll~~~~~~v~rssps~~ltt~~p~--~~lnkl~~dv~S~f~r~~----  452 (510)
T KOG2622|consen  379 IENASKRILKSEEEPSFGWIYFNAYHMSGYRYLLVDNDTVVSRSSPSGKLTTLAPE--LALNKLREDVDSEFTRVK----  452 (510)
T ss_pred             HhcccchhccCcccCccceeeecchhccceeeeeccCCceeeccCCCcceeecCCh--HHHHHHHHhhhccccccc----
Confidence            99999999999999999999999999999999999999999999999999999999  678999999999999987    


Q ss_pred             CCCCcceEEEEecCCeEEEEEeeCCEEEEEEEecCCccHHhHHHHHHHHHHhhcCCcccc
Q 010307          453 GCEKDLEVSIRAKNNAWAIARITGGKELYMVLEKASETLLYASDAVEKFSNRYCNGAFSL  512 (513)
Q Consensus       453 ~~~~~~Ei~vKt~~d~WVv~k~s~~Relyvvl~~k~~tL~~v~~ev~k~~~~~f~gif~~  512 (513)
                        ++|+|||||++|||||||||+|+|++||||++||+||+||++||+|||++||+|||||
T Consensus       453 --eed~Ei~Vka~sd~WVV~kk~~~r~lymil~~~n~tL~dv~~~v~~~~~~~f~~iFf~  510 (510)
T KOG2622|consen  453 --EEDMEICVKAKSDYWVVAKKSRGRELYMILEKKNATLLDVTDEVKRFSNRYFSGIFFM  510 (510)
T ss_pred             --cccceeEEEecCcEEEEEEecCCceEEEEEcCCcchhhhhHHHHHHHHHHhhhccccC
Confidence              6899999999999999999999999999999999999999999999999999999996



>PF08217 DUF1712: Fungal domain of unknown function (DUF1712); InterPro: IPR013176 The function of this fungal family of proteins is unknown Back     alignment and domain information
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain Back     alignment and domain information
>KOG0997 consensus Uncharacterized conserved protein Sand [Function unknown] Back     alignment and domain information
>KOG2622 consensus Putative myrosinase precursor [Defense mechanisms] Back     alignment and domain information
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses Back     alignment and domain information
>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query513
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 47.5 bits (112), Expect = 9e-06
 Identities = 54/436 (12%), Positives = 114/436 (26%), Gaps = 119/436 (27%)

Query: 56  LITFTRIFSPEAAC-EIIEAERHSHVFYEAETDIWMVMVVEKGKDSDAIWRI-DALRKVL 113
           L  F   F     C ++ +  +   +  + E D     ++          R+   L    
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKS--ILSKEEIDH----IIMSKDAVSGTLRLFWTLLSKQ 75

Query: 114 KEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCL-KE 172
           +E+   FV        +L  +          Y F+M  +        +    + +   + 
Sbjct: 76  EEMVQKFV------EEVLRIN----------YKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 173 RGTVQMLTMG-----------REAAIEVQSLVSVL---DSCAGNSSCYSMILFHDLLVST 218
               Q+               R+A +E++   +VL      +G +           +   
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW----------VALD 169

Query: 219 TLSPDDTINLFTYAVLRLSPNALSSGVNSW-SYIRRGSTSSHFVSGSALTH--SGPVSEQ 275
                       + +              W +     S  +       L +      + +
Sbjct: 170 VCLSYKVQCKMDFKIF-------------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 276 IYHSSDTSPVGNNINRVTRALQHGKWYKGKDGFLVTDIWGVDVGSLVCATPTVWLQQTEE 335
             HSS+     ++I    R L   K Y  ++  LV      +V          W      
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPY--ENCLLVLL----NV-----QNAKAW-----N 260

Query: 336 AMYLCPYQFKSLTLIL--LIPVSSILNGEQG--VALVKQQ--LLENASLKIL-KV----E 384
           A            L+      V+  L+      ++L      L  +    +L K      
Sbjct: 261 AF-----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 385 EKLSKGWGGENAYHVS--------------GYRYLLVDGDRNISRASPPGKVTTLA---- 426
           + L +     N   +S               ++++  D    I  +S    +  L     
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS----LNVLEPAEY 371

Query: 427 KESLLALSKLRDEVDL 442
           ++    LS       +
Sbjct: 372 RKMFDRLSVFPPSAHI 387


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query513
3cue_A219 Transport protein particle 23 kDa subunit; membran 86.54
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=86.54  E-value=20  Score=34.09  Aligned_cols=128  Identities=12%  Similarity=0.174  Sum_probs=86.0

Q ss_pred             EEEEEcCCCCCCCccccCcEEEEcCC-----CCChhhhhhhhhHHHHHHHhhhccCCCc---------------------
Q 010307           14 QLCIFDLRRGQNEGQELDKILFFFPA-----DLPFSTQLSVIGLSEGLITFTRIFSPEA---------------------   67 (513)
Q Consensus        14 ~f~Ifnp~~g~~Eg~e~~kILfY~P~-----~~~~n~ql~~IGL~egiv~Ft~~Fs~~~---------------------   67 (513)
                      +|+|||-.=         .++||.-.     ..+.|+.+..-|+.-|+-.+++..+|..                     
T Consensus         5 sl~IiNk~G---------glIY~r~~~~~~~~l~snd~l~lag~lhsv~ai~~~ltP~~~~~~~~~~~~~~~~~~~~~g~   75 (219)
T 3cue_A            5 TILVINKSG---------GLIYQRNFTNDEQKLNSNEYLILASTLHGVFAIASQLTPKALQLTQQTNIENTIPYIPYVGM   75 (219)
T ss_dssp             EEEEECTTS---------CEEEEEECSSCCCCSCHHHHHHHHHHHHHHHHHHHHTCCSCC-----------CCCCCSCCC
T ss_pred             EEEEEeCCC---------CEEeehhhccCcCCCCcchhhhhhhhhHHHHHHHhhcCCCcccccccccccccccccccccc
Confidence            688998653         36666622     2567899999999999999999888742                     


Q ss_pred             ------------------------------------------cceEEEecceEEEEEEecCCeEEEEEEEcCC-C-----
Q 010307           68 ------------------------------------------ACEIIEAERHSHVFYEAETDIWMVMVVEKGK-D-----   99 (513)
Q Consensus        68 ------------------------------------------~~~~I~T~k~~~v~~e~Ep~~wm~~~v~k~~-~-----   99 (513)
                                                                ..+.++|++.++-.++--.++.+++..+... +     
T Consensus        76 ~~~~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~  155 (219)
T 3cue_A           76 SSNRSDTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTI  155 (219)
T ss_dssp             ----------------------------CCSCCSCCCCCCSSSCCEEEESSCEEEEEECTTSCEEEEEESSCC-------
T ss_pred             cccccccccccccccccccccccccccccccccccccccCCCceEEEEeCCEEEEEEEcCCCCEEEEEecCCCccccccc
Confidence                                                      2678999999999999889999999764321 0     


Q ss_pred             ----------CCchhhHHHHHHHHHHHHHHHHH--hccchhHhhhcCCChhHHHHhhhHHHHHh
Q 010307          100 ----------SDAIWRIDALRKVLKEVHSLFVM--FYGSIRAMLEKDPSGGLIRSHLYPFIMDY  151 (513)
Q Consensus       100 ----------~~~~i~~~~l~~~L~~~Y~~F~L--f~Gsf~~~l~~~~~~~~L~~~L~~F~~~y  151 (513)
                                ....+.+..++..|++.|+.|.=  .--||=..-.. -.-+.+..+++.+...+
T Consensus       156 ~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~~~p-I~S~~Fd~~V~~~~~~~  218 (219)
T 3cue_A          156 ATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMP-IRSNLFDEKVKKMVENL  218 (219)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHHHHHSCTTCCTTSC-CCCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc-cccHHHHHHHHHHHHhc
Confidence                      00123457889999999988862  11233222111 13356777777776543




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00