Citrus Sinensis ID: 010356

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510--

MLLECSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ

ccccccccHHHHHHHHHccccccccHHHHHHHHHHcccccccccccEEEcccEEEEEEcHHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccEEEccccEEEEEccccccEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHccccccccccccccEEEcccEEEccccccccccccccEEHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccc

cccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHccccEEccccEEEEEccHHHHHHHHHHHHHcccccccccccccEEEEEcccHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHcccHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHcccEEEccccEEEEEccccccEEEEEccccEEccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHcccccccccccEEEEEEccEEEEccccccccccccccEEHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHcEEEEEcccccccccEEEcHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHccccEEcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccc

mllecsnnAMGLWSKikgkgtefkgpqpvgqaimknlppsemiescsvagpgfVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVvdfsspniakemhvgHLRSTIIGDSLARMLEFSNVEVLrrnhvgdwgtQFGMLIEYLFekfpnsedanETAIGELQEFYRRsknrfdsdpafKERAQQAVVRLqsgepkyhEAWAQICEISRKEFDKVYKRLRVDLEekgesfynpyipgvidelskqglveesqgaRVIFIEGVNIPLIIvksdggfnyasTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKragwlsaddstypkashvgfglvlgedgkrlRTRFSEVVRLVDLLDEAKNRSKAVLIergkdkewtEEELEQTAEAVGYGaakyfdlknnrltnytfsfdqmlndkgnTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ

MLLECSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSspniakemhvghLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVrlqsgepkyhEAWAQICEISRKEFDKVYKRLRVDLeekgesfynpyipGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVgfglvlgedgkrlrTRFSEVVRlvdlldeaknrskavliergkdkewteeELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ

MLLECSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKewteeeleqtaeaVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ

***********LW*****************************IESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFP*********************************************PKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIER*****W****LEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC***

MLLECSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLV*************KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRS****************ELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ

*LLECSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		512	2.2.26 [Sep-21-2011]
Q8KPU9		584	Arginine--tRNA ligase OS=	yes	no	0.960	0.842	0.494	1e-143
Q5N643		584	Arginine--tRNA ligase OS=	yes	no	0.960	0.842	0.492	1e-142
Q6P1S4		660	Arginine--tRNA ligase, cy	yes	no	0.972	0.754	0.487	1e-139
B0JLI8		585	Arginine--tRNA ligase OS=	yes	no	0.964	0.844	0.488	1e-139
A7YW98		660	Arginine--tRNA ligase, cy	yes	no	0.970	0.753	0.488	1e-138
P37880		661	Arginine--tRNA ligase, cy	yes	no	0.970	0.751	0.490	1e-138
Q8DKN4		584	Arginine--tRNA ligase OS=	yes	no	0.945	0.828	0.490	1e-137
B8HSK8		585	Arginine--tRNA ligase OS=	yes	no	0.939	0.822	0.498	1e-137
B1XPX8		585	Arginine--tRNA ligase OS=	yes	no	0.968	0.847	0.481	1e-136
P40329		660	Arginine--tRNA ligase, cy	yes	no	0.970	0.753	0.480	1e-136

>sp\|Q8KPU9\|SYR_SYNE7 Arginine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=argS PE=3 SV=2	Back alignment and function desciption

 Score =  507 bits (1306), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 256/518 (49%), Positives = 348/518 (67%), Gaps = 26/518 (5%)

Query: 6   SNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAK 65
           SN AM L  ++       + P+ + + +++NL  +++ E  ++AGPGF+N  L  +++  
Sbjct: 44  SNVAMSLAKQLG------QPPRAIAETLVQNLNLADLCEPPAIAGPGFINFTLQPSYLVA 97

Query: 66  NIQKMLVD---GIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN 122
            +Q++  D   GI+  +P  RV   +VDFSSPNIAKEMHVGHLRSTIIGDS+AR+LEF  
Sbjct: 98  QLQQLQTDERLGIQPVSPPQRV---IVDFSSPNIAKEMHVGHLRSTIIGDSIARVLEFQG 154

Query: 123 VEVLRRNHVGDWGTQFGMLIEYLFEKFPNS-EDANETAIGELQEFYRRSKNRFDSDPAFK 181
            EVLR NHVGDWGTQFGMLI +L E++P +    +   I +L  FY+++K RFD DP+F+
Sbjct: 155 HEVLRLNHVGDWGTQFGMLIAFLQEQYPQALSQPDALDISDLVAFYKQAKARFDEDPSFQ 214

Query: 182 ERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVID 241
           E A+Q VV LQSGE    +AW  +C+ SR+EF K+Y RL + LEE+GESFYNPY+P +++
Sbjct: 215 ETARQRVVDLQSGEATARQAWQLLCDQSRREFQKIYDRLDIQLEERGESFYNPYLPAIVE 274

Query: 242 ELSKQGLVEESQGARVIFIEGVN------IPLIIVKSDGGFNYASTDLAALWYRLNEEKA 295
           +L + GL+ E QGA+ +F+EG        +PLI+ KSDGG+NYA+TDLAAL YRL +++A
Sbjct: 275 DLRRLGLLVEDQGAQCVFLEGFQNKEGQPLPLIVQKSDGGYNYATTDLAALRYRLGQDQA 334

Query: 296 EWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE 355
           + IIYVTD GQ  HF  VF  A+RAGWL A      +  HV FGLV GEDGK+L+TR  +
Sbjct: 335 QRIIYVTDSGQANHFAQVFQVAQRAGWLPA----AAQIEHVPFGLVQGEDGKKLKTRAGD 390

Query: 356 VVRLVDLLDEAKNRSKAVLIER--GKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNY 413
            VRL DLLDEA +R++  L  R   +++  T E +E  A+AVG GA KY DL  NR +NY
Sbjct: 391 TVRLRDLLDEAVDRARTDLTTRIAAEERSETPEFIEAVAQAVGLGAVKYADLSQNRNSNY 450

Query: 414 TFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLL 473
            FSFD+ML  +GNTA YLLYA+ RI  I RK G D  +L    + VL    ER+L   +L
Sbjct: 451 IFSFDKMLALQGNTAPYLLYAYVRIQGIARKGGIDFAQLDPVAA-VLTEPTERSLAKQVL 509

Query: 474 HFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQV 511
              EV++E   +LLPN +C YL+ LS+ F +FY  C +
Sbjct: 510 QLGEVLDEVARDLLPNRLCSYLFELSQTFNQFYDRCPI 547

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9

>sp\|Q5N643\|SYR_SYNP6 Arginine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=argS PE=3 SV=1	Back alignment and function description

>sp\|Q6P1S4\|SYRC_XENTR Arginine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=rars PE=2 SV=1	Back alignment and function description

>sp\|B0JLI8\|SYR_MICAN Arginine--tRNA ligase OS=Microcystis aeruginosa (strain NIES-843) GN=argS PE=3 SV=1	Back alignment and function description

>sp\|A7YW98\|SYRC_BOVIN Arginine--tRNA ligase, cytoplasmic OS=Bos taurus GN=RARS PE=2 SV=1	Back alignment and function description

>sp\|P37880\|SYRC_CRIGR Arginine--tRNA ligase, cytoplasmic OS=Cricetulus griseus GN=RARS PE=2 SV=1	Back alignment and function description

>sp\|Q8DKN4\|SYR_THEEB Arginine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=argS PE=3 SV=1	Back alignment and function description

>sp\|B8HSK8\|SYR_CYAP4 Arginine--tRNA ligase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=argS PE=3 SV=1	Back alignment and function description

>sp\|B1XPX8\|SYR_SYNP2 Arginine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=argS PE=3 SV=1	Back alignment and function description

>sp\|P40329\|SYRC_RAT Arginine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Rars PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		512
255546293		592	arginyl-tRNA synthetase, putative [Ricin	0.986	0.853	0.849	0.0
224064484		590	predicted protein [Populus trichocarpa]	0.986	0.855	0.855	0.0
449435790		590	PREDICTED: arginine--tRNA ligase, cytopl	0.986	0.855	0.830	0.0
225445067		649	PREDICTED: arginyl-tRNA synthetase-like	0.986	0.778	0.826	0.0
15236164		642	Arginyl-tRNA synthetase, class Ic [Arabi	0.990	0.789	0.801	0.0
2632106		590	arginyl-tRNA synthetase [Arabidopsis tha	0.986	0.855	0.803	0.0
297799374		590	arginyl-tRNA synthetase [Arabidopsis lyr	0.986	0.855	0.801	0.0
297738741		691	unnamed protein product [Vitis vinifera]	0.990	0.733	0.756	0.0
15219682		590	arginyl-tRNA synthetase [Arabidopsis tha	0.986	0.855	0.796	0.0
2632103		589	arginyl-tRNA synthetase [Arabidopsis tha	0.986	0.857	0.796	0.0

>gi\|255546293\|ref\|XP_002514206.1\| arginyl-tRNA synthetase, putative [Ricinus communis] gi\|223546662\|gb\|EEF48160.1\| arginyl-tRNA synthetase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/505 (84%), Positives = 465/505 (92%)

Query: 7   NNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKN 66
           NNAM LWSKIKGK TEFKGP  VGQAIMKNLPPSE+IESCSVAGPGFVNVVLSK WM+K 
Sbjct: 53  NNAMSLWSKIKGKNTEFKGPPAVGQAIMKNLPPSEVIESCSVAGPGFVNVVLSKKWMSKK 112

Query: 67  IQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVL 126
           IQKML+DGI++WAPKL VK+AVVDFSSPNIAKEMHVGHLRSTIIGD+LARMLEFS V+VL
Sbjct: 113 IQKMLIDGIDSWAPKLLVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSKVDVL 172

Query: 127 RRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQ 186
           RRNHVGDWGTQFGMLIE+LFEKFPN ED NE AIG+LQ FY+ SK RFD+D  FKERAQ+
Sbjct: 173 RRNHVGDWGTQFGMLIEFLFEKFPNFEDVNERAIGDLQAFYKASKQRFDADSEFKERAQK 232

Query: 187 AVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQ 246
           AVVRLQ GEPKY +AWAQIC+ISRKEFDKVY+RL V LEEKGESFYNPYIPG+ID LS Q
Sbjct: 233 AVVRLQGGEPKYRQAWAQICDISRKEFDKVYQRLGVQLEEKGESFYNPYIPGIIDALSNQ 292

Query: 247 GLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQ 306
           GLVEES+GARVIFIEGVNIPLI+VKSDGGFNYASTDL ALWYRLNEEKAEWIIYVTDVGQ
Sbjct: 293 GLVEESEGARVIFIEGVNIPLIVVKSDGGFNYASTDLTALWYRLNEEKAEWIIYVTDVGQ 352

Query: 307 QLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEA 366
           Q HFDMVF AAKRA WL ADDS +PKASHVGFGLVLG+DGKR RTR +EVVRLVDLLDEA
Sbjct: 353 QQHFDMVFKAAKRASWLPADDSMFPKASHVGFGLVLGDDGKRFRTRATEVVRLVDLLDEA 412

Query: 367 KNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGN 426
           K RSKAVL+ERGK +EWTE+ELEQ AEA+GYGA KY DLKNNRLTNYTF++DQMLNDKGN
Sbjct: 413 KTRSKAVLVERGKAEEWTEQELEQIAEAIGYGAVKYADLKNNRLTNYTFNYDQMLNDKGN 472

Query: 427 TAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNL 486
           TAVYLLYAHARICSIIRKSG+D+EELKK GSLVLDH DER+LGLHLL F+E +EEA TNL
Sbjct: 473 TAVYLLYAHARICSIIRKSGRDMEELKKMGSLVLDHPDERSLGLHLLQFAETVEEACTNL 532

Query: 487 LPNVVCEYLYNLSEYFTRFYSNCQV 511
           LPNV+CEYLYNLSEYFT+FYSNC+V
Sbjct: 533 LPNVLCEYLYNLSEYFTKFYSNCKV 557

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224064484\|ref\|XP_002301499.1\| predicted protein [Populus trichocarpa] gi\|222843225\|gb\|EEE80772.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449435790\|ref\|XP_004135677.1\| PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Cucumis sativus] gi\|449489808\|ref\|XP_004158422.1\| PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225445067\|ref\|XP_002280299.1\| PREDICTED: arginyl-tRNA synthetase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|15236164\|ref\|NP_194360.1\| Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana] gi\|2632105\|emb\|CAB11468.1\| arginyl-tRNA synthetase [Arabidopsis thaliana] gi\|4539426\|emb\|CAB38959.1\| arginyl-tRNA synthetase [Arabidopsis thaliana] gi\|7269482\|emb\|CAB79485.1\| arginyl-tRNA synthetase [Arabidopsis thaliana] gi\|332659782\|gb\|AEE85182.1\| Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|2632106\|emb\|CAB11469.1\| arginyl-tRNA synthetase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297799374\|ref\|XP_002867571.1\| arginyl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata] gi\|297313407\|gb\|EFH43830.1\| arginyl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|297738741\|emb\|CBI27986.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|15219682\|ref\|NP_176826.1\| arginyl-tRNA synthetase [Arabidopsis thaliana] gi\|12322268\|gb\|AAG51163.1\|AC074025_13 arginyl-tRNA synthetase [Arabidopsis thaliana] gi\|14030685\|gb\|AAK53017.1\|AF375433_1 At1g66530/F28G11_14 [Arabidopsis thaliana] gi\|20334712\|gb\|AAM16217.1\| At1g66530/F28G11_14 [Arabidopsis thaliana] gi\|332196400\|gb\|AEE34521.1\| arginyl-tRNA synthetase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|2632103\|emb\|CAB11467.1\| arginyl-tRNA synthetase [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		512
TAIR\|locus:2136794		642	emb1027 "embryo defective 1027	0.990	0.789	0.779	7.1e-219
TAIR\|locus:2028982		590	AT1G66530 [Arabidopsis thalian	0.990	0.859	0.775	6.6e-216
ZFIN\|ZDB-GENE-030131-9014		661	rars "arginyl-tRNA synthetase"	0.974	0.754	0.479	6.1e-126
UNIPROTKB\|A7YW98		660	RARS "Arginine--tRNA ligase, c	0.972	0.754	0.480	3.4e-125
UNIPROTKB\|E2QRR5		660	RARS "Uncharacterized protein"	0.972	0.754	0.482	2.4e-124
UNIPROTKB\|J9P440		643	RARS "Uncharacterized protein"	0.972	0.774	0.482	2.4e-124
UNIPROTKB\|P54136		660	RARS "Arginine--tRNA ligase, c	0.972	0.754	0.474	4e-122
RGD\|1309215		660	Rars "arginyl-tRNA synthetase"	0.972	0.754	0.470	6.5e-122
MGI\|MGI:1914297		660	Rars "arginyl-tRNA synthetase"	0.972	0.754	0.470	1.3e-121
UNIPROTKB\|Q5ZM11		661	RARS "Arginine--tRNA ligase, c	0.974	0.754	0.464	9.5e-121

TAIR\|locus:2136794 emb1027 "embryo defective 1027" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2114 (749.2 bits), Expect = 7.1e-219, P = 7.1e-219
 Identities = 396/508 (77%), Positives = 449/508 (88%)

Query:     4 ECSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWM 63
             +C NNAMGLWS IKGKGT+FKGP  VGQA++K+LP SEM+ESCSVAGPGF+NVVLS  WM
Sbjct:   101 QC-NNAMGLWSIIKGKGTQFKGPPAVGQALVKSLPTSEMVESCSVAGPGFINVVLSAKWM 159

Query:    64 AKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNV 123
             AK+I+ ML+DG++TWAP L VK+AVVDFSSPNIAKEMHVGHLRSTIIGD+LARMLE+S+V
Sbjct:   160 AKSIENMLIDGVDTWAPTLSVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEYSHV 219

Query:   124 EVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKER 183
             EVLRRNHVGDWGTQFGMLIEYLFEKFP+++   ETAIG+LQ FY+ SK++FD D AFKE+
Sbjct:   220 EVLRRNHVGDWGTQFGMLIEYLFEKFPDTDSVTETAIGDLQVFYKASKHKFDLDEAFKEK 279

Query:   184 AQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDEL 243
             AQQAVVRLQ G+P Y +AWA+IC+ISR EF KVY+RLRV+LEEKGESFYNP+I  VI+EL
Sbjct:   280 AQQAVVRLQGGDPVYRKAWAKICDISRTEFAKVYQRLRVELEEKGESFYNPHIAKVIEEL 339

Query:   244 SKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTD 303
             + +GLVEES+GARVIF+EG +IPL++VKSDGGFNYASTDL ALWYRLNEEKAEWIIYVTD
Sbjct:   340 NSKGLVEESEGARVIFLEGFDIPLMVVKSDGGFNYASTDLTALWYRLNEEKAEWIIYVTD 399

Query:   304 VGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL 363
             VGQQ HF+M F AA++AGWL  +D TYP+ +HVGFGLVLGEDGKR RTR ++VVRLVDLL
Sbjct:   400 VGQQQHFNMFFKAARKAGWLPDNDKTYPRVNHVGFGLVLGEDGKRFRTRATDVVRLVDLL 459

Query:   364 DEAKNRSKAVLIERGKDKXXXXXXXXXXXXXVGYGAAKYFDLKNNRLTNYTFSFDQMLND 423
             DEAK RSK  LIERGKDK             VGYGA KY DLKNNRLTNYTFSFDQMLND
Sbjct:   460 DEAKTRSKLALIERGKDKEWTPEELDQTAEAVGYGAVKYADLKNNRLTNYTFSFDQMLND 519

Query:   424 KGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEAL 483
             KGNTAVYLLYAHARICSIIRKSGKDI+ELKKTG L LDHADERALGLHLL F+E +EEA 
Sbjct:   520 KGNTAVYLLYAHARICSIIRKSGKDIDELKKTGKLALDHADERALGLHLLRFAETVEEAC 579

Query:   484 TNLLPNVVCEYLYNLSEYFTRFYSNCQV 511
             TNLLP+V+CEYLYNLSE+FTRFYSNCQV
Sbjct:   580 TNLLPSVLCEYLYNLSEHFTRFYSNCQV 607

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0004814 "arginine-tRNA ligase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006420 "arginyl-tRNA aminoacylation" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0048366 "leaf development" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

TAIR\|locus:2028982 AT1G66530 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-9014 rars "arginyl-tRNA synthetase" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|A7YW98 RARS "Arginine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QRR5 RARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P440 RARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|P54136 RARS "Arginine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1309215 Rars "arginyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1914297 Rars "arginyl-tRNA synthetase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZM11 RARS "Arginine--tRNA ligase, cytoplasmic" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B0JLI8	SYR_MICAN	6, ., 1, ., 1, ., 1, 9	0.4884	0.9648	0.8444	yes	no
A5GW85	SYR_SYNR3	6, ., 1, ., 1, ., 1, 9	0.4734	0.9531	0.8271	yes	no
Q7U3V8	SYR_SYNPX	6, ., 1, ., 1, ., 1, 9	0.4744	0.9511	0.8157	yes	no
Q46HI6	SYR_PROMT	6, ., 1, ., 1, ., 1, 9	0.4469	0.9511	0.8023	yes	no
O84460	SYR_CHLTR	6, ., 1, ., 1, ., 1, 9	0.4155	0.9414	0.8561	yes	no
Q253D1	SYR_CHLFF	6, ., 1, ., 1, ., 1, 9	0.4440	0.9531	0.8683	yes	no
Q8E9Y7	SYR_SHEON	6, ., 1, ., 1, ., 1, 9	0.4329	0.9531	0.8399	yes	no
Q8DKN4	SYR_THEEB	6, ., 1, ., 1, ., 1, 9	0.4909	0.9453	0.8287	yes	no
A1S2P7	SYR_SHEAM	6, ., 1, ., 1, ., 1, 9	0.4280	0.9550	0.8416	yes	no
B1X0N5	SYR_CYAA5	6, ., 1, ., 1, ., 1, 9	0.502	0.9394	0.8222	yes	no
A4Y2U9	SYR_SHEPC	6, ., 1, ., 1, ., 1, 9	0.4310	0.9531	0.8399	yes	no
Q3M769	SYR_ANAVT	6, ., 1, ., 1, ., 1, 9	0.4902	0.9667	0.8418	yes	no
B7KCT7	SYR_CYAP7	6, ., 1, ., 1, ., 1, 9	0.4729	0.9628	0.8427	yes	no
Q3AGU9	SYR_SYNSC	6, ., 1, ., 1, ., 1, 9	0.4641	0.9492	0.8237	yes	no
Q5L6U4	SYR_CHLAB	6, ., 1, ., 1, ., 1, 9	0.4277	0.9472	0.8629	yes	no
Q3AVY5	SYR_SYNS9	6, ., 1, ., 1, ., 1, 9	0.4684	0.9628	0.8355	yes	no
Q5N643	SYR_SYNP6	6, ., 1, ., 1, ., 1, 9	0.4922	0.9609	0.8424	yes	no
Q8YQU9	SYR_NOSS1	6, ., 1, ., 1, ., 1, 9	0.4844	0.9667	0.8418	yes	no
Q7VE03	SYR_PROMA	6, ., 1, ., 1, ., 1, 9	0.4679	0.9570	0.8126	yes	no
B2J6I0	SYR_NOSP7	6, ., 1, ., 1, ., 1, 9	0.4817	0.9550	0.8373	yes	no
Q3KLP4	SYR_CHLTA	6, ., 1, ., 1, ., 1, 9	0.4155	0.9414	0.8561	yes	no
Q9PJT8	SYR_CHLMU	6, ., 1, ., 1, ., 1, 9	0.4218	0.9375	0.8525	yes	no
C1DHR7	SYR_AZOVD	6, ., 1, ., 1, ., 1, 9	0.4323	0.9257	0.8186	yes	no
Q10XL4	SYR_TRIEI	6, ., 1, ., 1, ., 1, 9	0.4854	0.9707	0.8495	yes	no
Q6MEP4	SYR_PARUW	6, ., 1, ., 1, ., 1, 9	0.4584	0.9609	0.8424	yes	no
Q0I6R7	SYR_SYNS3	6, ., 1, ., 1, ., 1, 9	0.4675	0.9609	0.8338	yes	no
Q8KPU9	SYR_SYNE7	6, ., 1, ., 1, ., 1, 9	0.4942	0.9609	0.8424	yes	no
A9BDF0	SYR_PROM4	6, ., 1, ., 1, ., 1, 9	0.4545	0.9609	0.8159	yes	no
B7JVP5	SYR_CYAP8	6, ., 1, ., 1, ., 1, 9	0.4698	0.9355	0.8188	yes	no
A2CDB7	SYR_PROM3	6, ., 1, ., 1, ., 1, 9	0.4615	0.9550	0.8109	yes	no
B8HSK8	SYR_CYAP4	6, ., 1, ., 1, ., 1, 9	0.498	0.9394	0.8222	yes	no
B1XPX8	SYR_SYNP2	6, ., 1, ., 1, ., 1, 9	0.4815	0.9687	0.8478	yes	no
Q2SMY0	SYR_HAHCH	6, ., 1, ., 1, ., 1, 9	0.4247	0.9550	0.8460	yes	no
A5GP97	SYR_SYNPW	6, ., 1, ., 1, ., 1, 9	0.4725	0.9511	0.8157	yes	no
Q824H4	SYR_CHLCV	6, ., 1, ., 1, ., 1, 9	0.4296	0.9472	0.8599	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	6.1.1.19	0.914
3rd Layer	6.1.1	0.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_II3255	arginine-tRNA ligase (EC-6.1.1.19) (590 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0023017401	aspartate-tRNA ligase (EC-6.1.1.12) (530 aa)		•	•	•	•	0.871
	gw1.64.262.1	aminoacyl-tRNA ligase (EC-6.1.1.5) (1028 aa)		•	•	•	•	0.847
	gw1.XI.1444.1	aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa)	•	•			•	0.838
	gw1.VII.873.1	aminoacyl-tRNA ligase (EC-6.1.1.5) (1117 aa)		•	•	•	•	0.831
	gw1.XIX.1762.1	histidine-tRNA ligase (475 aa)		•			•	0.814
	gw1.28.724.1	histidine-tRNA ligase (EC-6.1.1.21) (441 aa)					•	0.788
	estExt_Genewise1_v1.C_LG_V3371	serine-tRNA ligase (EC-6.1.1.11) (447 aa)		•			•	0.783
	eugene3.00050325	alanyl-tRNA synthetase (EC-6.1.1.7) (973 aa)		•			•	0.777
	fgenesh4_pm.C_LG_X000986	hypothetical protein (932 aa)		•	•		•	0.773
	eugene3.29520003	annotation not avaliable (742 aa)					•	0.772

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		512
PLN02286		576	PLN02286, PLN02286, arginine-tRNA ligase	0.0
COG0018		577	COG0018, ArgS, Arginyl-tRNA synthetase [Translatio	1e-148
PRK01611		507	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	1e-140
TIGR00456		566	TIGR00456, argS, arginyl-tRNA synthetase	1e-125
pfam00750		345	pfam00750, tRNA-synt_1d, tRNA synthetases class I	1e-107
PRK12451		562	PRK12451, PRK12451, arginyl-tRNA synthetase; Revie	1e-98
cd00671		212	cd00671, ArgRS_core, catalytic core domain of argi	4e-68
cd07956		156	cd07956, Anticodon_Ia_Arg, Anticodon-binding domai	2e-35
pfam05746		117	pfam05746, DALR_1, DALR anticodon binding domain	2e-22
smart00836		122	smart00836, DALR_1, DALR anticodon binding domain	2e-21
pfam03485		84	pfam03485, Arg_tRNA_synt_N, Arginyl tRNA synthetas	4e-08
cd00802		143	cd00802, class_I_aaRS_core, catalytic core domain	2e-07
smart01016		85	smart01016, Arg_tRNA_synt_N, Arginyl tRNA syntheta	5e-07

>gnl\|CDD\|215160 PLN02286, PLN02286, arginine-tRNA ligase	Back alignment and domain information

 Score = 1033 bits (2674), Expect = 0.0
 Identities = 411/506 (81%), Positives = 450/506 (88%), Gaps = 2/506 (0%)

Query: 6   SNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAK 65
            NNAMGLWSK+KGKGT FK P+ V QAI+KNLP SEMIES SVAGPGFVNV LS +W+AK
Sbjct: 38  CNNAMGLWSKLKGKGTSFKNPRAVAQAIVKNLPASEMIESTSVAGPGFVNVRLSASWLAK 97

Query: 66  NIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEV 125
            I++MLVDGI+TWAP L VK+AVVDFSSPNIAKEMHVGHLRSTIIGD+LARMLEFS VEV
Sbjct: 98  RIERMLVDGIDTWAPTLPVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEV 157

Query: 126 LRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQ 185
           LRRNHVGDWGTQFGMLIE+LFEKFPN E  ++ AIG+LQEFY+ +K RFD D  FK RAQ
Sbjct: 158 LRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQ 217

Query: 186 QAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSK 245
           QAVVRLQ G+P+Y  AWA+ICEISR+EF+KVY+RLRV+LEEKGESFYNPYIPGVI+EL  
Sbjct: 218 QAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEKGESFYNPYIPGVIEELES 277

Query: 246 QGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVG 305
           +GLV ES GARVIF+EG +IPLI+VKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVG
Sbjct: 278 KGLVVESDGARVIFVEGFDIPLIVVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVG 337

Query: 306 QQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDE 365
           QQ HFDMVF AAKRAGWL   + TYP+  HVGFGLVLGEDGKR RTR  EVVRLVDLLDE
Sbjct: 338 QQQHFDMVFKAAKRAGWL--PEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDE 395

Query: 366 AKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG 425
           AK+RSKA LIERGKD EWT EELEQ AEAVGYGA KY DLKNNRLTNYTFSFDQML+ KG
Sbjct: 396 AKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKG 455

Query: 426 NTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTN 485
           NTAVYLLYAHARICSIIRKSGKDI+ELKKTG +VLDH DERALGLHLL F EV+EEA T+
Sbjct: 456 NTAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTD 515

Query: 486 LLPNVVCEYLYNLSEYFTRFYSNCQV 511
           LLPN +CEYLYNLSE FT+FYSNC+V
Sbjct: 516 LLPNRLCEYLYNLSEKFTKFYSNCKV 541

Length = 576

>gnl\|CDD\|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|232981 TIGR00456, argS, arginyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|216097 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R)	Back alignment and domain information

>gnl\|CDD\|183534 PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|153410 cd07956, Anticodon_Ia_Arg, Anticodon-binding domain of arginyl tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|218729 pfam05746, DALR_1, DALR anticodon binding domain	Back alignment and domain information

>gnl\|CDD\|214846 smart00836, DALR_1, DALR anticodon binding domain	Back alignment and domain information

>gnl\|CDD\|217589 pfam03485, Arg_tRNA_synt_N, Arginyl tRNA synthetase N terminal domain	Back alignment and domain information

>gnl\|CDD\|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|214975 smart01016, Arg_tRNA_synt_N, Arginyl tRNA synthetase N terminal dom	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		512
PLN02286		576	arginine-tRNA ligase	100.0
COG0018		577	ArgS Arginyl-tRNA synthetase [Translation, ribosom	100.0
PRK12451		562	arginyl-tRNA synthetase; Reviewed	100.0
KOG4426		656	consensus Arginyl-tRNA synthetase [Translation, ri	100.0
TIGR00456		566	argS arginyl-tRNA synthetase. This model recognize	100.0
PRK01611		507	argS arginyl-tRNA synthetase; Reviewed	100.0
KOG1195		567	consensus Arginyl-tRNA synthetase [Translation, ri	100.0
PF00750		354	tRNA-synt_1d: tRNA synthetases class I (R); InterP	100.0
cd00671		212	ArgRS_core catalytic core domain of arginyl-tRNA s	100.0
PTZ00399		651	cysteinyl-tRNA-synthetase; Provisional	100.0
PLN02946		557	cysteine-tRNA ligase	100.0
COG0215		464	CysS Cysteinyl-tRNA synthetase [Translation, ribos	100.0
PRK00260		463	cysS cysteinyl-tRNA synthetase; Validated	100.0
PRK14536		490	cysS cysteinyl-tRNA synthetase; Provisional	100.0
PRK14534		481	cysS cysteinyl-tRNA synthetase; Provisional	100.0
PRK14535		699	cysS cysteinyl-tRNA synthetase; Provisional	100.0
PF01406		300	tRNA-synt_1e: tRNA synthetases class I (C) catalyt	100.0
TIGR00435		465	cysS cysteinyl-tRNA synthetase. This model finds t	100.0
PRK12418		384	cysteinyl-tRNA synthetase; Provisional	100.0
PRK11893		511	methionyl-tRNA synthetase; Reviewed	100.0
TIGR03447		411	mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-	100.0
TIGR00398		530	metG methionyl-tRNA synthetase. The methionyl-tRNA	100.0
COG0143		558	MetG Methionyl-tRNA synthetase [Translation, ribos	100.0
PRK00133		673	metG methionyl-tRNA synthetase; Reviewed	99.98
PLN02224		616	methionine-tRNA ligase	99.97
PRK12268		556	methionyl-tRNA synthetase; Reviewed	99.97
KOG2007		586	consensus Cysteinyl-tRNA synthetase [Translation,	99.97
PRK12267		648	methionyl-tRNA synthetase; Reviewed	99.97
PLN02610		801	probable methionyl-tRNA synthetase	99.96
cd00668		312	Ile_Leu_Val_MetRS_core catalytic core domain of is	99.95
cd00672		213	CysRS_core catalytic core domain of cysteinyl tRNA	99.94
cd00812		314	LeuRS_core catalytic core domain of leucyl-tRNA sy	99.94
cd00814		319	MetRS_core catalytic core domain of methioninyl-tR	99.94
cd00674		353	LysRS_core_class_I catalytic core domain of class	99.93
cd00818		338	IleRS_core catalytic core domain of isoleucyl-tRNA	99.93
cd00817		382	ValRS_core catalytic core domain of valyl-tRNA syn	99.92
PRK13208		800	valS valyl-tRNA synthetase; Reviewed	99.92
KOG0436		578	consensus Methionyl-tRNA synthetase [Translation,	99.92
PRK05729		874	valS valyl-tRNA synthetase; Reviewed	99.91
PF09334		391	tRNA-synt_1g: tRNA synthetases class I (M); InterP	99.91
TIGR00422		861	valS valyl-tRNA synthetase. The valyl-tRNA synthet	99.91
cd00802		143	class_I_aaRS_core catalytic core domain of class I	99.89
COG0525		877	ValS Valyl-tRNA synthetase [Translation, ribosomal	99.89
TIGR00464		470	gltX_bact glutamyl-tRNA synthetase, bacterial fami	99.89
PRK00750		510	lysK lysyl-tRNA synthetase; Reviewed	99.88
PRK06039		975	ileS isoleucyl-tRNA synthetase; Reviewed	99.88
TIGR00392		861	ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA	99.88
PRK14900		1052	valS valyl-tRNA synthetase; Provisional	99.87
PRK01406		476	gltX glutamyl-tRNA synthetase; Reviewed	99.86
cd07956		156	Anticodon_Ia_Arg Anticodon-binding domain of argin	99.86
PLN02943		958	aminoacyl-tRNA ligase	99.85
PRK05743		912	ileS isoleucyl-tRNA synthetase; Reviewed	99.84
PRK14895		513	gltX glutamyl-tRNA synthetase; Provisional	99.84
TIGR00467		515	lysS_arch lysyl-tRNA synthetase, archaeal and spir	99.83
PLN02843		974	isoleucyl-tRNA synthetase	99.82
PRK13804		961	ileS isoleucyl-tRNA synthetase; Provisional	99.82
PRK12558		445	glutamyl-tRNA synthetase; Provisional	99.82
PTZ00419		995	valyl-tRNA synthetase-like protein; Provisional	99.81
TIGR00395		938	leuS_arch leucyl-tRNA synthetase, archaeal and cyt	99.81
PLN02882		1159	aminoacyl-tRNA ligase	99.81
TIGR00396		842	leuS_bact leucyl-tRNA synthetase, eubacterial and	99.81
PLN02381		1066	valyl-tRNA synthetase	99.8
PRK00390		805	leuS leucyl-tRNA synthetase; Validated	99.79
PTZ00427		1205	isoleucine-tRNA ligase, putative; Provisional	99.77
COG0495		814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	99.77
PLN02563		963	aminoacyl-tRNA ligase	99.75
PLN02627		535	glutamyl-tRNA synthetase	99.75
PRK12410		433	glutamylglutaminyl-tRNA synthetase; Provisional	99.74
PF00133		601	tRNA-synt_1: tRNA synthetases class I (I, L, M and	99.74
COG0060		933	IleS Isoleucyl-tRNA synthetase [Translation, ribos	99.72
cd00808		239	GluRS_core catalytic core domain of discriminating	99.71
PRK04156		567	gltX glutamyl-tRNA synthetase; Provisional	99.7
cd09287		240	GluRS_non_core catalytic core domain of non-discri	99.68
PF01921		360	tRNA-synt_1f: tRNA synthetases class I (K); InterP	99.68
PF00749		314	tRNA-synt_1c: tRNA synthetases class I (E and Q),	99.67
cd00418		230	GlxRS_core catalytic core domain of glutamyl-tRNA	99.67
COG1384		521	LysS Lysyl-tRNA synthetase (class I) [Translation,	99.64
COG0008		472	GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr	99.63
TIGR03838		272	queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe	99.57
PF05746		119	DALR_1: DALR anticodon binding domain; InterPro: I	99.56
PRK05710		299	glutamyl-Q tRNA(Asp) synthetase; Reviewed	99.54
KOG0432		995	consensus Valyl-tRNA synthetase [Translation, ribo	99.52
KOG1247		567	consensus Methionyl-tRNA synthetase [Translation,	99.51
KOG1149		524	consensus Glutamyl-tRNA synthetase (mitochondrial)	99.44
PLN03233		523	putative glutamate-tRNA ligase; Provisional	99.44
PTZ00402		601	glutamyl-tRNA synthetase; Provisional	99.42
TIGR00463		560	gltX_arch glutamyl-tRNA synthetase, archaeal and e	99.41
cd00807		238	GlnRS_core catalytic core domain of glutaminyl-tRN	99.4
smart00836		122	DALR_1 DALR anticodon binding domain. This all alp	99.37
PLN02907		722	glutamate-tRNA ligase	99.36
PRK05347		554	glutaminyl-tRNA synthetase; Provisional	99.35
PF03485		85	Arg_tRNA_synt_N: Arginyl tRNA synthetase N termina	99.34
TIGR00440		522	glnS glutaminyl-tRNA synthetase. This protein is a	99.26
PRK12300		897	leuS leucyl-tRNA synthetase; Reviewed	99.26
KOG0433		937	consensus Isoleucyl-tRNA synthetase [Translation,	99.23
PRK14703		771	glutaminyl-tRNA synthetase/YqeY domain fusion prot	99.2
PLN02859		788	glutamine-tRNA ligase	99.17
PLN02959		1084	aminoacyl-tRNA ligase	99.0
KOG0435		876	consensus Leucyl-tRNA synthetase [Translation, rib	98.99
PTZ00437		574	glutaminyl-tRNA synthetase; Provisional	98.93
PLN02959		1084	aminoacyl-tRNA ligase	98.81
KOG0434		1070	consensus Isoleucyl-tRNA synthetase [Translation,	98.77
PRK12300		897	leuS leucyl-tRNA synthetase; Reviewed	98.67
PRK13354		410	tyrosyl-tRNA synthetase; Provisional	97.54
KOG1147		712	consensus Glutamyl-tRNA synthetase [Translation, r	97.49
PRK05912		408	tyrosyl-tRNA synthetase; Validated	97.46
TIGR00233		328	trpS tryptophanyl-tRNA synthetase. This model repr	97.39
PTZ00126		383	tyrosyl-tRNA synthetase; Provisional	97.32
PRK12285		368	tryptophanyl-tRNA synthetase; Reviewed	97.3
cd00806		280	TrpRS_core catalytic core domain of tryptophanyl-t	97.26
PRK08560		329	tyrosyl-tRNA synthetase; Validated	97.25
cd00395		273	Tyr_Trp_RS_core catalytic core domain of tyrosinyl	97.13
KOG0437		1080	consensus Leucyl-tRNA synthetase [Translation, rib	96.98
PLN02486		383	aminoacyl-tRNA ligase	96.94
COG0162		401	TyrS Tyrosyl-tRNA synthetase [Translation, ribosom	96.78
TIGR00234		377	tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy	96.65
KOG0435		876	consensus Leucyl-tRNA synthetase [Translation, rib	96.54
PTZ00348		682	tyrosyl-tRNA synthetase; Provisional	95.89
cd07375		117	Anticodon_Ia_like Anticodon-binding domain of clas	95.25
COG0180		314	TrpS Tryptophanyl-tRNA synthetase [Translation, ri	94.99
cd00805		269	TyrRS_core catalytic core domain of tyrosinyl-tRNA	94.54
KOG0437		1080	consensus Leucyl-tRNA synthetase [Translation, rib	94.42
PRK12556		332	tryptophanyl-tRNA synthetase; Provisional	94.06
PRK12284		431	tryptophanyl-tRNA synthetase; Reviewed	93.61
PF00579		292	tRNA-synt_1b: tRNA synthetases class I (W and Y);	92.67
cd07957		129	Anticodon_Ia_Met Anticodon-binding domain of methi	91.38
PRK00927		333	tryptophanyl-tRNA synthetase; Reviewed	91.3
cd07958		117	Anticodon_Ia_Leu_BEm Anticodon-binding domain of b	89.71
PRK12282		333	tryptophanyl-tRNA synthetase II; Reviewed	89.57
PRK01233		682	glyS glycyl-tRNA synthetase subunit beta; Validate	88.39
PRK12283		398	tryptophanyl-tRNA synthetase; Reviewed	88.07
cd07959		117	Anticodon_Ia_Leu_AEc Anticodon-binding domain of a	86.11
TIGR00211		691	glyS glycyl-tRNA synthetase, tetrameric type, beta	85.41
KOG1148		764	consensus Glutaminyl-tRNA synthetase [Translation,	83.41

>PLN02286 arginine-tRNA ligase	Back alignment and domain information

Probab=100.00  E-value=1.9e-117  Score=960.91  Aligned_cols=506  Identities=81%  Similarity=1.286  Sum_probs=462.8

Q ss_pred             ccHHHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCceeeEeccCCeEEEEeCHHHHHHHHHHHHHcCCCCCCCcCCC
Q 010356            5 CSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRV   84 (512)
Q Consensus         5 ~~n~a~~~ak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~v~~~g~GfiN~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (512)
                      |||+||.|||.++|+|+++++|++||++|++.|...++|++|+++|||||||+|++.++.+.+.+++..+..++.+...+
T Consensus        37 a~n~a~~lak~~~~~~~~~k~P~~iA~~i~~~l~~~~~i~~v~vagpGfiNf~l~~~~l~~~l~~~~~~~~~~g~~~~~~  116 (576)
T PLN02286         37 QCNNAMGLWSKLKGKGTSFKNPRAVAQAIVKNLPASEMIESTSVAGPGFVNVRLSASWLAKRIERMLVDGIDTWAPTLPV  116 (576)
T ss_pred             ccchHHHHHHHhCccccccCCHHHHHHHHHHhCccccceeeEEEcCCCeEEEEECHHHHHHHHHHHHHcCcccCCCCCCC
Confidence            79999999999999999999999999999999987778999999999999999999999999988887654433333356


Q ss_pred             ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHH
Q 010356           85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ  164 (512)
Q Consensus        85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~  164 (512)
                      ++|+||||||||+|||||||+||+||||+|||+|+++||+|+++|||||||+||++++.++...+|+.....+.++.++.
T Consensus       117 ~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~  196 (576)
T PLN02286        117 KRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDLQ  196 (576)
T ss_pred             ceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999998876677765444667899998


Q ss_pred             HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeeccccccCchHHHHHHHH
Q 010356          165 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELS  244 (512)
Q Consensus       165 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~es~~~~~v~~~~~~L~  244 (512)
                      .+|+++++.++.+|++.+++++.+.+||+||+++..+|++++++++++|+++|++|||+||..+||+|.+.+.++++.|+
T Consensus       197 ~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~ges~y~~~~~~vi~~L~  276 (576)
T PLN02286        197 EFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEKGESFYNPYIPGVIEELE  276 (576)
T ss_pred             HHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCchhhhhhHHHHHHHHH
Confidence            99999999998899999999999999999999999999999999999999999999999987788999888899999999


Q ss_pred             hCCCeeeeCceEEEEecCCCCCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCC
Q 010356          245 KQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLS  324 (512)
Q Consensus       245 ~~g~~~~~dGa~~~~~~g~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~  324 (512)
                      ++|++|++||++|+++++.+.++||+||||++||+|+|||||+||++.+++|++|||||++|++||+|++++++++|+.+
T Consensus       277 ~~g~~~e~dGa~~v~l~~~~~~~vl~ksDGt~tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~hf~~v~~~l~~lG~~~  356 (576)
T PLN02286        277 SKGLVVESDGARVIFVEGFDIPLIVVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWLP  356 (576)
T ss_pred             HCCCEEeeCCceEeeccCCCCceEEEECCCchhhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHHHHHHHHHHHHcCCCc
Confidence            99999999999999987766789999999999999999999999998889999999999999999999999999999842


Q ss_pred             CCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHh
Q 010356          325 ADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFD  404 (512)
Q Consensus       325 ~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~  404 (512)
                      +  +++.++.|+.||||++.+|+|||||+|++|+++||++++.++|.+.+.+|+..+++++++.+++|+.+|++|+||++
T Consensus       357 ~--~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~  434 (576)
T PLN02286        357 E--DTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYAD  434 (576)
T ss_pred             c--ccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhh
Confidence            1  12357999999999878888999999999999999999999999999998766778999999999999999999999


Q ss_pred             hccCCCCCccccccccccccCCchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHH
Q 010356          405 LKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT  484 (512)
Q Consensus       405 L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~  484 (512)
                      |++++.++++|||+++++++|||||||||||||+||||||++.........+...+.++.|++|+..|++||++|.+|++
T Consensus       435 L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~  514 (576)
T PLN02286        435 LKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEACT  514 (576)
T ss_pred             hhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999743211111112345689999999999999999999999


Q ss_pred             hcChHHHHHHHHHHHHHHhcchhcccCC
Q 010356          485 NLLPNVVCEYLYNLSEYFTRFYSNCQVQ  512 (512)
Q Consensus       485 ~~~p~~l~~yl~~La~~fn~fY~~~~vl  512 (512)
                      +++||.||+||++||+.||+||++||||
T Consensus       515 ~~~P~~l~~Yl~~LA~~F~~fY~~~~Vl  542 (576)
T PLN02286        515 DLLPNRLCEYLYNLSEKFTKFYSNCKVN  542 (576)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHhcCccC
Confidence            9999999999999999999999999996

>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12451 arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00456 argS arginyl-tRNA synthetase	Back alignment and domain information

>PRK01611 argS arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases	Back alignment and domain information

>PTZ00399 cysteinyl-tRNA-synthetase; Provisional	Back alignment and domain information

>PLN02946 cysteine-tRNA ligase	Back alignment and domain information

>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated	Back alignment and domain information

>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>TIGR00435 cysS cysteinyl-tRNA synthetase	Back alignment and domain information

>PRK12418 cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK11893 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase	Back alignment and domain information

>TIGR00398 metG methionyl-tRNA synthetase	Back alignment and domain information

>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK00133 metG methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PLN02224 methionine-tRNA ligase	Back alignment and domain information

>PRK12268 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12267 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PLN02610 probable methionyl-tRNA synthetase	Back alignment and domain information

>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases	Back alignment and domain information

>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase	Back alignment and domain information

>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases	Back alignment and domain information

>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases	Back alignment and domain information

>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase	Back alignment and domain information

>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases	Back alignment and domain information

>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases	Back alignment and domain information

>PRK13208 valS valyl-tRNA synthetase; Reviewed	Back alignment and domain information

>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK05729 valS valyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>TIGR00422 valS valyl-tRNA synthetase	Back alignment and domain information

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase	Back alignment and domain information

>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family	Back alignment and domain information

>PRK00750 lysK lysyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00392 ileS isoleucyl-tRNA synthetase	Back alignment and domain information

>PRK14900 valS valyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases	Back alignment and domain information

>PLN02943 aminoacyl-tRNA ligase	Back alignment and domain information

>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK14895 gltX glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete	Back alignment and domain information

>PLN02843 isoleucyl-tRNA synthetase	Back alignment and domain information

>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK12558 glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>PTZ00419 valyl-tRNA synthetase-like protein; Provisional	Back alignment and domain information

>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family	Back alignment and domain information

>PLN02882 aminoacyl-tRNA ligase	Back alignment and domain information

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family	Back alignment and domain information

>PLN02381 valyl-tRNA synthetase	Back alignment and domain information

>PRK00390 leuS leucyl-tRNA synthetase; Validated	Back alignment and domain information

>PTZ00427 isoleucine-tRNA ligase, putative; Provisional	Back alignment and domain information

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN02563 aminoacyl-tRNA ligase	Back alignment and domain information

>PLN02627 glutamyl-tRNA synthetase	Back alignment and domain information

>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional	Back alignment and domain information

>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase	Back alignment and domain information

>PRK04156 gltX glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase	Back alignment and domain information

>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase	Back alignment and domain information

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase	Back alignment and domain information

>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed	Back alignment and domain information

>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN03233 putative glutamate-tRNA ligase; Provisional	Back alignment and domain information

>PTZ00402 glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family	Back alignment and domain information

>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase	Back alignment and domain information

>smart00836 DALR_1 DALR anticodon binding domain	Back alignment and domain information

>PLN02907 glutamate-tRNA ligase	Back alignment and domain information

>PRK05347 glutaminyl-tRNA synthetase; Provisional	Back alignment and domain information

>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>TIGR00440 glnS glutaminyl-tRNA synthetase	Back alignment and domain information

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional	Back alignment and domain information

>PLN02859 glutamine-tRNA ligase	Back alignment and domain information

>PLN02959 aminoacyl-tRNA ligase	Back alignment and domain information

>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PTZ00437 glutaminyl-tRNA synthetase; Provisional	Back alignment and domain information

>PLN02959 aminoacyl-tRNA ligase	Back alignment and domain information

>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK13354 tyrosyl-tRNA synthetase; Provisional	Back alignment and domain information

>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK05912 tyrosyl-tRNA synthetase; Validated	Back alignment and domain information

>TIGR00233 trpS tryptophanyl-tRNA synthetase	Back alignment and domain information

>PTZ00126 tyrosyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK12285 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase	Back alignment and domain information

>PRK08560 tyrosyl-tRNA synthetase; Validated	Back alignment and domain information

>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase	Back alignment and domain information

>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN02486 aminoacyl-tRNA ligase	Back alignment and domain information

>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00234 tyrS tyrosyl-tRNA synthetase	Back alignment and domain information

>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PTZ00348 tyrosyl-tRNA synthetase; Provisional	Back alignment and domain information

>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains	Back alignment and domain information

>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase	Back alignment and domain information

>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12556 tryptophanyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK12284 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases	Back alignment and domain information

>PRK00927 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases	Back alignment and domain information

>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed	Back alignment and domain information

>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated	Back alignment and domain information

>PRK12283 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases	Back alignment and domain information

>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit	Back alignment and domain information

>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		512
1bs2_A		607	Yeast Arginyl-Trna Synthetase Length = 607		2e-46
1iq0_A		592	Thermus Thermophilus Arginyl-Trna Synthetase Length		5e-25
2zue_A		629	Crystal Structure Of Pyrococcus Horikoshii Arginyl-		2e-22
3fnr_A		464	Crystal Structure Of Putative Arginyl T-Rna Synthet		5e-05

>pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase Length = 607

Back alignment and structure

Iteration: 1

Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 150/500 (30%), Positives = 236/500 (47%), Gaps = 30/500 (6%) Query: 24 KGPQPVGQAIM--KNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPK 81 KG P A+ + P + +E GP F+ + ++AK + ++ E + Sbjct: 79 KGANPKDLAVQWAEKFPCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSC 137 Query: 82 LRV--KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFG 139 V KK +++FSSPNIAK H GHLRSTIIG LA + E EV+R N++GDWG QFG Sbjct: 138 KLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFG 197 Query: 140 MLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRF----DSDP---AFKERAQQAVVRLQ 192 +L FE++ N E + I L + Y R DS P + +A++ R++ Sbjct: 198 LL-AVGFERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRME 256 Query: 193 SGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGES-FYNPYIPGVIDELSKQGLVE 250 G+ + + W + E S +++ Y RL + + GES + ID ++GL Sbjct: 257 DGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTH 316 Query: 251 ESQGARVIFIEGVNIPL---IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQ 307 E +GA +I + N L I+ KSDG Y + D+ A R + + +IYV Q Sbjct: 317 EDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQD 376 Query: 308 LHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK 367 LH F K+ G+ A D HV FG+V G + TR VV L ++L+E K Sbjct: 377 LHAAQFFEILKQMGFEWAKD-----LQHVNFGMVQG-----MSTRKGTVVFLDNILEETK 426 Query: 368 NRSKAVLIERGKDKXXXXXXXXXXXXXVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNT 427 + V+ ++ ++K VG A D++ R+ NY F +++ML+ +G+T Sbjct: 427 EKMHEVM-KKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDT 485 Query: 428 AVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLL-HFSEVIEEALTNL 486 YL YAH+R+ S+ R + +E L L + LL + +V+ A+ Sbjct: 486 GPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTH 545 Query: 487 LPNVVCEYLYNLSEYFTRFY 506 P V YL+ L+ + Y Sbjct: 546 EPTTVVTYLFKLTHQVSSCY 565

PyMOL of 1bs2

>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase Length = 592

Back alignment and structure

>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna Synthetase Complexed With Trna(Arg) And An Atp Analog (Anp) Length = 629

Back alignment and structure

>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase From Campylobacter Jejuni Length = 464

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		512
1f7u_A		607	Arginyl-tRNA synthetase; RNA-protein complex, amin	0.0
2zue_A		629	Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase	0.0
1iq0_A		592	Arginyl-tRNA synthetase; riken structural genomics	1e-174
3fnr_A		464	Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX	1e-31
3gdz_A		109	Arginyl-tRNA synthetase; klebsiella pneumoniae sub	7e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08

>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Length = 607	Back alignment and structure

 Score =  629 bits (1625), Expect = 0.0
 Identities = 145/503 (28%), Positives = 236/503 (46%), Gaps = 28/503 (5%)

Query: 24  KGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIET--WAPK 81
             P+ +     +  P  + +E     GP F+    +  ++AK +   ++   E       
Sbjct: 81  ANPKDLAVQWAEKFPCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKL 139

Query: 82  LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGML 141
           +  KK +++FSSPNIAK  H GHLRSTIIG  LA + E    EV+R N++GDWG QFG+L
Sbjct: 140 VENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLL 199

Query: 142 IEYLFEKFPNSEDANETAIGELQEFYRRSKNRFD-------SDPAFKERAQQAVVRLQSG 194
               FE++ N E   +  I  L + Y R     +        + +   +A++   R++ G
Sbjct: 200 AVG-FERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDG 258

Query: 195 EPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGES-FYNPYIPGVIDELSKQGLVEES 252
           + +  + W +  E S +++   Y RL +      GES      +   ID   ++GL  E 
Sbjct: 259 DEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHED 318

Query: 253 QGARVIFIEGVNIPL---IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLH 309
           +GA +I +   N  L   I+ KSDG   Y + D+ A   R  +   + +IYV    Q LH
Sbjct: 319 KGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLH 378

Query: 310 FDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNR 369
               F   K+ G+  A         HV FG+V G     + TR   VV L ++L+E K +
Sbjct: 379 AAQFFEILKQMGFEWAK-----DLQHVNFGMVQG-----MSTRKGTVVFLDNILEETKEK 428

Query: 370 SKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAV 429
              V +++ ++K    E  E+ A+ VG  A    D++  R+ NY F +++ML+ +G+T  
Sbjct: 429 MHEV-MKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGP 487

Query: 430 YLLYAHARICSIIRKSGKDIEELKKTGSL-VLDHADERALGLHLLHFSEVIEEALTNLLP 488
           YL YAH+R+ S+ R +    +E        +L     + L   L  + +V+  A+    P
Sbjct: 488 YLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEP 547

Query: 489 NVVCEYLYNLSEYFTRFYSNCQV 511
             V  YL+ L+   +  Y    V
Sbjct: 548 TTVVTYLFKLTHQVSSCYDVLWV 570

PyMOL of 1f7u

>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Length = 629	Back alignment and structure

>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Length = 592	Back alignment and structure

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Length = 464	Back alignment and structure

>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp} Length = 109	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		512
1f7u_A		607	Arginyl-tRNA synthetase; RNA-protein complex, amin	100.0
2zue_A		629	Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
1iq0_A		592	Arginyl-tRNA synthetase; riken structural genomics	100.0
3fnr_A		464	Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX	100.0
1li5_A		461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	100.0
4dlp_A		536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	100.0
3kfl_A		564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	100.0
2csx_A		497	Methionyl-tRNA synthetase; ligase, riken structura	100.0
3tqo_A		462	Cysteinyl-tRNA synthetase; protein synthesis, liga	100.0
2d5b_A		500	Methionyl-tRNA synthetase; rossmann fold, class 1A	100.0
3h99_A		560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	100.0
2x1l_A		524	Methionyl-tRNA synthetase; nucleotide-binding, pro	100.0
3c8z_A		414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	100.0
3sp1_A		501	Cysteinyl-tRNA synthetase; structural genomics, se	100.0
1rqg_A		722	Methionyl-tRNA synthetase; translation, dimerizati	100.0
3u1f_A		542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	99.97
1wkb_A		810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	99.95
1ile_A		821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	99.94
2o5r_A		481	Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g	99.94
1gax_A		862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	99.94
1irx_A		523	Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin	99.93
1ffy_A		917	Isoleucyl-tRNA synthetase; protein-RNA complex, me	99.93
2v0c_A		878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	99.93
3al0_C		592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	99.92
4arc_A		880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	99.92
3afh_A		488	Glutamyl-tRNA synthetase 2; protein-substrate comp	99.87
1nzj_A		298	Hypothetical protein YADB; Zn cluster, glutamyl T-	99.87
1wz2_A		967	Leucyl-tRNA synthetase; ligase, riken structural g	99.86
4g6z_A		490	Glutamate-tRNA ligase; aminoacyl-tRNA synthetase,	99.82
2cfo_A		492	Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s	99.81
1j09_A		468	Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r	99.78
4gri_A		512	Glutamate--tRNA ligase; structural genomics, seatt	99.77
2ja2_A		498	Glutamyl-tRNA synthetase; non-discriminating gluta	99.76
3aii_A		553	Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta	99.71
1qtq_A		553	GLNRS, protein (glutaminyl-tRNA synthetase); gluta	99.65
2hz7_A		851	Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c	99.61
3gdz_A		109	Arginyl-tRNA synthetase; klebsiella pneumoniae sub	99.59
2cyb_A		323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	98.25
2dlc_X		394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	98.12
1n3l_A		372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	98.02
2g36_A		340	Tryptophanyl-tRNA synthetase; TM0492, structural g	97.6
2cya_A		364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	97.55
2zp1_A		314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	97.28
3p0j_A		690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	96.93
2pid_A		356	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	95.7
2yxn_A		322	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	95.35
1jil_A		420	Tyrrs, tyrosyl-tRNA synthetase; truncation, based	95.0
2jan_A		432	Tyrosyl-tRNA synthetase; protein biosynthesis, ami	95.0
2ts1_A		419	Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30	94.94
1h3f_A		432	Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy	94.37
2el7_A		337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	94.16
2ip1_A		432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	93.93
3tzl_A		322	Tryptophanyl-tRNA synthetase; structural genomics,	93.63
1yi8_B		351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	93.21
1r6t_A		477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	92.94
1y42_X		392	Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR	92.92
3vgj_A		373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	92.47
3i05_A		395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	92.46
1r6u_A		437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	92.27
3hv0_A		393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	92.19
3tze_A		406	Tryptophanyl-tRNA synthetase; structural genomics,	91.91
3jxe_A		392	Tryptophanyl-tRNA synthetase; adenosine triphospha	91.78
2yy5_A		348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	91.72
2j5b_A		348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	91.37
1i6k_A		328	TRPRS, tryptophanyl-tRNA synthetase; class I tRNA	90.92
3hzr_A		386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	90.9
2cyc_A		375	Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy	89.18
3a04_A		372	Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR	88.31
3foc_A		451	Tryptophanyl-tRNA synthetase; structural genomics,	87.76
2el7_A		337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	83.83
3sz3_A		341	Tryptophanyl-tRNA synthetase; structural genomics,	81.73
3hzr_A		386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	81.16
3prh_A		388	Tryptophanyl-tRNA synthetase; TRPRS, protein biosy	80.84

>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*	Back alignment and structure

Probab=100.00  E-value=6.8e-106  Score=874.92  Aligned_cols=486  Identities=29%  Similarity=0.469  Sum_probs=427.4

Q ss_pred             ccHHHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCceeeEeccCCeEEEEeCHHHHHHHH-HHHHHcCCCCC-CCcC
Q 010356            5 CSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNI-QKMLVDGIETW-APKL   82 (512)
Q Consensus         5 ~~n~a~~~ak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~v~~~g~GfiN~~l~~~~~~~~~-~~~~~~~~~~~-~~~~   82 (512)
                      |||+||  +|.+|      ++|++||++|+++|+.+++|++++++|| ||||+|+++++.+.+ ..++..+..++ .+.+
T Consensus        70 a~~~~~--~k~~~------~~P~~iA~~i~~~l~~~~~i~~ve~ag~-fiN~~l~~~~~~~~~~~~i~~~~~~~G~~~~~  140 (607)
T 1f7u_A           70 LIPIPR--LRIKG------ANPKDLAVQWAEKFPCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLV  140 (607)
T ss_dssp             EEEGGG--GCCTT------CCHHHHHHHHHHTCCCTTTEEEEEEETT-EEEEEECHHHHHHHHHHHHHHHGGGTTCCCCS
T ss_pred             hhHHHH--HHhcC------CCHHHHHHHHHHhccccCceeEEEEcCC-EEEEEECHHHHHHHHHHHHHhhhhhcCCCccc
Confidence            577766  38888      9999999999999987788999999996 999999999999755 45665554432 2345


Q ss_pred             CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356           83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE  162 (512)
Q Consensus        83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~  162 (512)
                      .+++|+||||||||+||+||||+||+|+||+|+|+|+++||+|+++||+||||+||++++.+ +.++++.+....+++.+
T Consensus       141 ~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~-~~~~g~~~~~~~~~i~~  219 (607)
T 1f7u_A          141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVG-FERYGNEEALVKDPIHH  219 (607)
T ss_dssp             SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-HHHHCCHHHHHHCHHHH
T ss_pred             CCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHH-HHHhCchhhccCCChHH
Confidence            68899999999999999999999999999999999999999999999999999999999877 45566433223457888


Q ss_pred             HHHHHHHHhcccCCC-------hHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEe-eecccccc-
Q 010356          163 LQEFYRRSKNRFDSD-------PAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYN-  233 (512)
Q Consensus       163 l~~~y~~~~~~~~~~-------~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~-~~~es~~~-  233 (512)
                      +.++|+++++.++++       +.+.++|++.+.+||+||+++.++|++++++++++|+++|++|||+|| |.+||.|. 
T Consensus       220 l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~  299 (607)
T 1f7u_A          220 LFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSK  299 (607)
T ss_dssp             HHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCH
T ss_pred             HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhh
Confidence            999999999888877       889999999999999999999999999999999999999999999995 77899887 


Q ss_pred             CchHHHHHHHHhCCCeeeeCceEEEEec--CCCCC-eEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchH
Q 010356          234 PYIPGVIDELSKQGLVEESQGARVIFIE--GVNIP-LIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHF  310 (512)
Q Consensus       234 ~~v~~~~~~L~~~g~~~~~dGa~~~~~~--g~~~d-~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf  310 (512)
                      +.++++++.|+++|++|+++|++||+++  |++.| +|++|+||+++|.++|+|+|+||+..+++|++|||||++|++||
T Consensus       300 ~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~g~~~d~~v~~KsDG~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f  379 (607)
T 1f7u_A          300 ESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHA  379 (607)
T ss_dssp             HHHHHHHHHHHHTTCEEEETTEEEEEGGGTCTTTCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHH
T ss_pred             hHHHHHHHHHHhCCCEEEECCcEEEEecccCCCCCceeEeccCCCcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHH
Confidence            7899999999999999999999999988  33444 89999999999999999999999977899999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCC-CHHHHH
Q 010356          311 DMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEW-TEEELE  389 (512)
Q Consensus       311 ~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~-~~~~~~  389 (512)
                      +|++++++++|+     +++..|+|++||+|.     |||||+||+|+++||++++..+|.+.+.++.  ..+ ..++..
T Consensus       380 ~q~~~~~~~lG~-----~~~~~~~Hv~fg~v~-----kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~--~~~~~~~e~~  447 (607)
T 1f7u_A          380 AQFFEILKQMGF-----EWAKDLQHVNFGMVQ-----GMSTRKGTVVFLDNILEETKEKMHEVMKKNE--NKYAQIEHPE  447 (607)
T ss_dssp             HHHHHHHHHTTC-----GGGGGEEEECCCCEE-----SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCH--HHHTTCSCHH
T ss_pred             HHHHHHHHHcCC-----CcCcEEEEecccccc-----cccCCCCCcccHHHHHHHHHHHHHHHHHhCc--ccccchhhHH
Confidence            999999999998     346679999999986     4999999999999999999998876665321  001 135778


Q ss_pred             HHHHhhchhhHHHHhhccCCCCCccccccccccccCCchHHHHHHHHHHHHHHHhh-cCChhhhhhcCCCCCCCHHHHHH
Q 010356          390 QTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKS-GKDIEELKKTGSLVLDHADERAL  468 (512)
Q Consensus       390 ~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~sil~k~-~~~~~~~~~~~~~~l~~~~e~~L  468 (512)
                      ++|+++|++|||||+|+.++.++++|||+++++++|||||||||||||+|||+||+ +.....+...+...+.++.|++|
T Consensus       448 ~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L  527 (607)
T 1f7u_A          448 EVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLL  527 (607)
T ss_dssp             HHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998 43322111122233568999999


Q ss_pred             HHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhcccCC
Q 010356          469 GLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ  512 (512)
Q Consensus       469 ~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~vl  512 (512)
                      ++.|.+||+++++|+++++||.+|+||++||+.||+||++||||
T Consensus       528 ~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~fn~fY~~~~Vl  571 (607)
T 1f7u_A          528 IRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLWVA  571 (607)
T ss_dssp             HHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCST
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999997

PyMOL of 1f7u

>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A	Back alignment and structure

>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1	Back alignment and structure

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}	Back alignment and structure

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B	Back alignment and structure

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}	Back alignment and structure

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}	Back alignment and structure

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*	Back alignment and structure

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}	Back alignment and structure

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A	Back alignment and structure

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A	Back alignment and structure

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*	Back alignment and structure

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}	Back alignment and structure

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}	Back alignment and structure

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1	Back alignment and structure

>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*	Back alignment and structure

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}	Back alignment and structure

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*	Back alignment and structure

>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}	Back alignment and structure

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A	Back alignment and structure

>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1	Back alignment and structure

>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*	Back alignment and structure

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*	Back alignment and structure

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}	Back alignment and structure

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*	Back alignment and structure

>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*	Back alignment and structure

>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*	Back alignment and structure

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}	Back alignment and structure

>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}	Back alignment and structure

>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}	Back alignment and structure

>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A	Back alignment and structure

>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}	Back alignment and structure

>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A	Back alignment and structure

>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}	Back alignment and structure

>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A	Back alignment and structure

>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}	Back alignment and structure

>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}	Back alignment and structure

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}	Back alignment and structure

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}	Back alignment and structure

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*	Back alignment and structure

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}	Back alignment and structure

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}	Back alignment and structure

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*	Back alignment and structure

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*	Back alignment and structure

>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*	Back alignment and structure

>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*	Back alignment and structure

>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*	Back alignment and structure

>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}	Back alignment and structure

>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A	Back alignment and structure

>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*	Back alignment and structure

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}	Back alignment and structure

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*	Back alignment and structure

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*	Back alignment and structure

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*	Back alignment and structure

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A	Back alignment and structure

>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A	Back alignment and structure

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}	Back alignment and structure

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0	Back alignment and structure

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A	Back alignment and structure

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0	Back alignment and structure

>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}	Back alignment and structure

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}	Back alignment and structure

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}	Back alignment and structure

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}	Back alignment and structure

>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A	Back alignment and structure

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}	Back alignment and structure

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*	Back alignment and structure

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}	Back alignment and structure

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}	Back alignment and structure

>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}	Back alignment and structure

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}	Back alignment and structure

>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		512
d1f7ua2		348	c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgR	3e-77
d1iq0a2		370	c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS	2e-64
d1f7ua1		124	a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgR	1e-16
d1iq0a1		126	a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgR	6e-16
d1irxa2		317	c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {	3e-08
d1li5a2		315	c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR	3e-08
d2d5ba2		348	c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR	7e-05
d1iq0a3		96	d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS),	2e-04
d1pfva2		350	c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe	3e-04
d1ivsa4		425	c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase	8e-04

>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 348	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  244 bits (624), Expect = 3e-77
 Identities = 111/353 (31%), Positives = 176/353 (49%), Gaps = 24/353 (6%)

Query: 85  KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEY 144
           KK +++FSSPNIAK  H GHLRSTIIG  LA + E    EV+R N++GDWG QFG+L   
Sbjct: 8   KKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVG 67

Query: 145 LFEKFPNSEDANETAIGELQEFYRRSKNRFDSD-------PAFKERAQQAVVRLQSGEPK 197
            FE++ N E   +  I  L + Y R     + +        +   +A++   R++ G+ +
Sbjct: 68  -FERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEE 126

Query: 198 YHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPY--IPGVIDELSKQGLVEESQGA 255
             + W +  E S +++   Y RL +  +            +   ID   ++GL  E +GA
Sbjct: 127 ALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGA 186

Query: 256 RVIFIEGVNIPL---IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDM 312
            +I +   N  L   I+ KSDG   Y + D+ A   R  +   + +IYV    Q LH   
Sbjct: 187 VLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQ 246

Query: 313 VFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKA 372
            F   K+ G+  A D       HV FG+V     + + TR   VV L ++L+E K +   
Sbjct: 247 FFEILKQMGFEWAKDLQ-----HVNFGMV-----QGMSTRKGTVVFLDNILEETKEKMHE 296

Query: 373 VLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG 425
           V +++ ++K    E  E+ A+ VG  A    D++  R+ NY F +++ML+ +G
Sbjct: 297 V-MKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEG 348

PyMOL of d1f7ua2

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Length = 370	Back information, alignment and structure

>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124	Back information, alignment and structure

>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Length = 126	Back information, alignment and structure

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317	Back information, alignment and structure

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315	Back information, alignment and structure

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348	Back information, alignment and structure

>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]} Length = 96	Back information, alignment and structure

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350	Back information, alignment and structure

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		512
d1f7ua2		348	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	100.0
d1iq0a2		370	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	100.0
d1li5a2		315	Cysteinyl-tRNA synthetase (CysRS) {Escherichia col	100.0
d1irxa2		317	Class I lysyl-tRNA synthetase {Archaeon Pyrococcus	99.96
d1ivsa4		425	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	99.95
d2d5ba2		348	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	99.95
d1pfva2		350	Methionyl-tRNA synthetase (MetRS) {Escherichia col	99.95
d1ffya3		450	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	99.93
d1ilea3		452	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	99.92
d1rqga2		361	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	99.88
d1f7ua1		124	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	99.85
d1iq0a1		126	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	99.82
d1h3na3		494	Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil	99.81
d1j09a2		305	Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph	99.75
d1nzja_		286	Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c	99.59
d1gtra2		331	Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co	99.34
d1iq0a3		96	Arginyl-tRNA synthetase (ArgRS), N-terminal 'addit	99.29
d1f7ua3		134	Arginyl-tRNA synthetase (ArgRS), N-terminal 'addit	98.85
d1h3fa1		343	Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi	97.8
d1n3la_		339	Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie	97.45
d1j1ua_		306	Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc	96.96
d1rqga1		210	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	96.59
d1jila_		323	Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au	96.27
d1r6ta2		386	Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo	96.2
d1pfva1		162	Methionyl-tRNA synthetase (MetRS) {Escherichia col	95.7
d2d5ba1		152	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	93.63
d1h3na1		128	Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil	82.94

>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-74  Score=587.56  Aligned_cols=332  Identities=33%  Similarity=0.506  Sum_probs=288.8

Q ss_pred             CCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHH
Q 010356           82 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG  161 (512)
Q Consensus        82 ~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~  161 (512)
                      ++++||+||||||||||||||||+||+|+||+|||+|+++||+|+++|||||||+||++++.++.. ++........++.
T Consensus         5 ~~~kki~vE~~SaNpt~plHvGH~R~aiiGd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~~~-~~~~~~~~~~~~~   83 (348)
T d1f7ua2           5 VENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFER-YGNEEALVKDPIH   83 (348)
T ss_dssp             SSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHH-HCCHHHHHHCHHH
T ss_pred             CCCCEEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHHHH-hccccccccccch
Confidence            578999999999999999999999999999999999999999999999999999999999877643 3322212234556


Q ss_pred             HHHHHHHHHhcccCC-------ChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEe-eeccc-cc
Q 010356          162 ELQEFYRRSKNRFDS-------DPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGES-FY  232 (512)
Q Consensus       162 ~l~~~y~~~~~~~~~-------~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~-~~~es-~~  232 (512)
                      ++.++|.++.+.+..       .+.+.+++++.+.++++||+++.+.|+.+++.+++.++++|++|||+|| |++|| ++
T Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~~~l~i~fD~~~~Es~~~  163 (348)
T d1f7ua2          84 HLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVS  163 (348)
T ss_dssp             HHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCC
T ss_pred             hHHHHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccc
Confidence            666777665544322       2457788899999999999999999999999999999999999999995 77885 45


Q ss_pred             cCchHHHHHHHHhCCCeeeeCceEEEEec--CCCCCe-EEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccch
Q 010356          233 NPYIPGVIDELSKQGLVEESQGARVIFIE--GVNIPL-IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLH  309 (512)
Q Consensus       233 ~~~v~~~~~~L~~~g~~~~~dGa~~~~~~--g~~~d~-vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~h  309 (512)
                      .....++++.|.++|++++++|++|++.+  |++.|. +++||||++||+|+|||||.+|++.+++|++|||||++|++|
T Consensus       164 ~~~~~~v~~~L~~~~~~~~~~ga~~~~~~~~g~~~~~~vl~ksDG~~tY~t~DiAy~~~K~~~~~~D~~I~V~g~dq~~~  243 (348)
T d1f7ua2         164 KESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLH  243 (348)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETTEEEEEGGGTCTTTCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHH
T ss_pred             ccchHHHHHHHHhhccccccCCcccccchhhccccccceeccCCCccceecchHHhhhhhhhccCCCEEEEecccccchh
Confidence            55567899999999999999999999987  555554 668999999999999999999998889999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Q 010356          310 FDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELE  389 (512)
Q Consensus       310 f~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (512)
                      |++++++++++|+.     ++..+.|+.||+|.     |||||+||+|+|+|||+++.++|.+.+.++. ....+.++.+
T Consensus       244 ~~~l~~~l~~lg~~-----~~~~~~h~~~g~v~-----kMStR~G~~i~l~dll~e~~~~a~~~~~~~~-~~~~~~~~~~  312 (348)
T d1f7ua2         244 AAQFFEILKQMGFE-----WAKDLQHVNFGMVQ-----GMSTRKGTVVFLDNILEETKEKMHEVMKKNE-NKYAQIEHPE  312 (348)
T ss_dssp             HHHHHHHHHHTTCG-----GGGGEEEECCCCEE-----SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCH-HHHTTCSCHH
T ss_pred             hhhHHHHHHHhCCC-----cccceeeecCCccc-----cccccCCCceEHHHHHHHHHHHHHHHHHhcc-CcCCChhhHH
Confidence            99999999999983     46679999999986     6999999999999999999999999888652 1223446788


Q ss_pred             HHHHhhchhhHHHHhhccCCCCCccccccccccccC
Q 010356          390 QTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG  425 (512)
Q Consensus       390 ~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~  425 (512)
                      ++|+++|++||||++|+++|.++++|||+++++++|
T Consensus       313 ~ia~~vgv~ai~y~~L~~~~~~~~~Fd~d~~l~~eG  348 (348)
T d1f7ua2         313 EVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEG  348 (348)
T ss_dssp             HHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSS
T ss_pred             HHHHHhhHHheehhhhhcCCCCCCEECHHHhcCCCC
Confidence            999999999999999999999999999999999886

PyMOL of d1f7ua2

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure