Citrus Sinensis ID: 010376

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510--
MLPRSRTMPSRIHHGAVEERHDVRHYLQVEVQPKAHIETEATNPQANYSNCFDDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHEEEEEEEEccEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEHHccccccccccccccccEEEEEEHHHHHHHHHHHHcEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
cccccccccccHcccEEEEccccccEEEEccccccccccccHHHHcccHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
mlprsrtmpsrihhgaveerhdVRHYLqvevqpkahieteatnpqanysncfdddgrlkrtgnfwttSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLsqcyrsgdpvtgqrnytYMDAVKanlggkkvIFCGLIQYLNLFGVAIGYTIAASVSMMAIKrsncfqksggkdpchmssngymITFGIIEVLfsqipdfdqVWWLSIVAAIMSFTYStaglglgigkvagnrsfkgsltgisigtltsagtvtGTQKLWRSLQALGAIAFAYSFSIILLEIqdtirsppaeyktmKKATLFSIIVTTTFYLLCGCmgyaafgdlapnnlltgfgfynpywlidIANAAIVVHLVGAYQVFCQPLFAFVEKwsakkwpksdlvtaeyeipipfwgvYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILgamgfwpltvyFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDlktykpfktry
mlprsrtmpsrihhgaveerhdvRHYLQVEVQPKAHieteatnpqanysnCFDDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSvagvvldlktykpfktry
MLPRSRTMPSRIHHGAVEERHDVRHYLQVEVQPKAHIETEATNPQANYSNCFDDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY
**********************VRHYLQVEV***************NYSNCFDDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIK*******************GYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKP*****
**********************************************************KRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIR******KTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTR*
***********IHHGAVEERHDVRHYLQVEVQPKAHIETEATNPQANYSNCFDDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY
*****RTMPSRIHHGAVEERHDVRHYLQVEV*******************CFDDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPF****
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MLPRSRTMPSRIHHGAVEERHDVRHYLQVEVQPKAHIETEATNPQANYSNCFDDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query512 2.2.26 [Sep-21-2011]
Q38967493 Amino acid permease 2 OS= yes no 0.902 0.937 0.714 0.0
Q9FN04466 Amino acid permease 4 OS= no no 0.892 0.980 0.717 0.0
Q39134476 Amino acid permease 3 OS= no no 0.904 0.972 0.692 0.0
Q8GUM3480 Amino acid permease 5 OS= no no 0.906 0.966 0.653 0.0
Q42400485 Amino acid permease 1 OS= no no 0.902 0.952 0.545 1e-159
O80592475 Amino acid permease 8 OS= no no 0.884 0.953 0.561 1e-157
P92934481 Amino acid permease 6 OS= no no 0.925 0.985 0.553 1e-157
Q9FF99467 Probable amino acid perme no no 0.853 0.935 0.493 1e-114
Q9LRB5441 Lysine histidine transpor no no 0.843 0.979 0.280 1e-38
Q9FKS8446 Lysine histidine transpor no no 0.789 0.905 0.280 2e-37
>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1 Back     alignment and function desciption
 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/470 (71%), Positives = 401/470 (85%), Gaps = 8/470 (1%)

Query: 44  PQANYSNCFDDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFA 103
           PQ  +  CFDDDGRLKRTG  WT S+HIITAVIGSGVLSLAWAIAQLGW+AGP V++LF+
Sbjct: 31  PQPAF-KCFDDDGRLKRTGTVWTASAHIITAVIGSGVLSLAWAIAQLGWIAGPAVMLLFS 89

Query: 104 LVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYT 163
           LV LY++ LLS CYR+GD V+G+RNYTYMDAV++ LGG K   CGLIQYLNLFG+AIGYT
Sbjct: 90  LVTLYSSTLLSDCYRTGDAVSGKRNYTYMDAVRSILGGFKFKICGLIQYLNLFGIAIGYT 149

Query: 164 IAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAA 223
           IAAS+SMMAIKRSNCF KSGGKDPCHMSSN YMI FG+ E+L SQ+PDFDQ+WW+SIVAA
Sbjct: 150 IAASISMMAIKRSNCFHKSGGKDPCHMSSNPYMIVFGVAEILLSQVPDFDQIWWISIVAA 209

Query: 224 IMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAF 283
           +MSFTYS  GL LGI +VA N  FKGSLTGISI      GTVT TQK+WR+ QALG IAF
Sbjct: 210 VMSFTYSAIGLALGIVQVAANGVFKGSLTGISI------GTVTQTQKIWRTFQALGDIAF 263

Query: 284 AYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLL 343
           AYS+S++L+EIQDT+RSPPAE KTMKKAT  SI VTT FY+LCG MGYAAFGD AP NLL
Sbjct: 264 AYSYSVVLIEIQDTVRSPPAESKTMKKATKISIAVTTIFYMLCGSMGYAAFGDAAPGNLL 323

Query: 344 TGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPI 403
           TGFGFYNP+WL+DIANAAIVVHLVGAYQVF QP+FAF+EK  A+++P +D ++ E+EI I
Sbjct: 324 TGFGFYNPFWLLDIANAAIVVHLVGAYQVFAQPIFAFIEKSVAERYPDNDFLSKEFEIRI 383

Query: 404 P-FWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKA 462
           P F   Y++N+FR+V+R+ FVV TT+ISML+PFFNDVVGILGA+GFWPLTVYFP+EMY  
Sbjct: 384 PGFKSPYKVNVFRMVYRSGFVVTTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIK 443

Query: 463 QKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY 512
           Q+K+ + +TRW+ LQ+L+V+C  I++VA +GS+AGV+LDLK YKPFK+ Y
Sbjct: 444 QRKVEKWSTRWVCLQMLSVACLVISVVAGVGSIAGVMLDLKVYKPFKSTY 493
Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, arginine, glutamate and neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine. Has a much higher affinity for basic amino acids as compared with AAP1. May function in xylem-to-phloem transfer and in uptake of amino acids assimilated in the green silique tissue.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1 Back     alignment and function description
>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2 Back     alignment and function description
>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1 Back     alignment and function description
>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1 Back     alignment and function description
>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1 Back     alignment and function description
>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1 Back     alignment and function description
>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1 Back     alignment and function description
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query512
225428003512 PREDICTED: amino acid permease 2 [Vitis 1.0 1.0 0.839 0.0
356541032 628 PREDICTED: LOW QUALITY PROTEIN: amino ac 1.0 0.815 0.810 0.0
13676299513 amino acid transporter [Glycine max] 1.0 0.998 0.807 0.0
356544864513 PREDICTED: amino acid permease 2-like [G 1.0 0.998 0.803 0.0
224103209469 amino acid permease [Populus trichocarpa 0.916 1.0 0.874 0.0
388497910512 unknown [Medicago truncatula] 1.0 1.0 0.773 0.0
255587378484 amino acid transporter, putative [Ricinu 0.945 1.0 0.814 0.0
4138679509 amino acid transporter [Vicia faba] 0.994 1.0 0.755 0.0
224083500463 amino acid permease [Populus trichocarpa 0.902 0.997 0.750 0.0
147811503481 hypothetical protein VITISV_005276 [Viti 0.927 0.987 0.739 0.0
>gi|225428003|ref|XP_002278086.1| PREDICTED: amino acid permease 2 [Vitis vinifera] gi|297744622|emb|CBI37884.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/512 (83%), Positives = 470/512 (91%)

Query: 1   MLPRSRTMPSRIHHGAVEERHDVRHYLQVEVQPKAHIETEATNPQANYSNCFDDDGRLKR 60
           MLPRSRT+PSRI++G VEER D+RHYLQVEVQPK H E+EA NPQANYS CFDDDGRLKR
Sbjct: 1   MLPRSRTLPSRIYNGVVEERQDIRHYLQVEVQPKPHGESEAINPQANYSKCFDDDGRLKR 60

Query: 61  TGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSG 120
           TG FWT SSHIITAVIGSGVLSLAWAI QLGWVAGP V+ILFA VNLY++NLL+QCYRSG
Sbjct: 61  TGTFWTASSHIITAVIGSGVLSLAWAIGQLGWVAGPIVMILFAFVNLYSSNLLAQCYRSG 120

Query: 121 DPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQ 180
           DP+TGQRNYTYM+AVKANLGGKKV+ CG IQYLNLFG AIGYTIAASVSMMAIKRSNCF 
Sbjct: 121 DPLTGQRNYTYMEAVKANLGGKKVLACGWIQYLNLFGTAIGYTIAASVSMMAIKRSNCFH 180

Query: 181 KSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGK 240
           KSGGKDPCHMSSNGYMITFGIIE++FSQIPDFDQVWWLSIVAAIMSFTYS+ GLGLG+ K
Sbjct: 181 KSGGKDPCHMSSNGYMITFGIIEIIFSQIPDFDQVWWLSIVAAIMSFTYSSVGLGLGVAK 240

Query: 241 VAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRS 300
           VA N SFKGSLTGISIGT+T AG VT TQKLWRSLQALGAIAFAYSFS+IL+EIQDTI+S
Sbjct: 241 VAENGSFKGSLTGISIGTVTHAGVVTSTQKLWRSLQALGAIAFAYSFSLILIEIQDTIKS 300

Query: 301 PPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANA 360
           PPAEYKTM+KAT+ SI VTT FY+LCGC GYAAFGDLAP NLLTGFGFY+PYWL+DIAN 
Sbjct: 301 PPAEYKTMRKATVLSIAVTTAFYMLCGCFGYAAFGDLAPGNLLTGFGFYDPYWLLDIANI 360

Query: 361 AIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRT 420
           AI+VHLVGAYQV+CQPLFAFVEKWSA KWPKSD VT EY++PIP +GVYQLN FRLVWRT
Sbjct: 361 AIIVHLVGAYQVYCQPLFAFVEKWSAHKWPKSDFVTEEYDLPIPCYGVYQLNFFRLVWRT 420

Query: 421 LFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILN 480
           +FVVLTTLI+MLLPFFNDVVGILGA GFWPLTVYFP+EMY +QKKIGR T+RW+ LQIL+
Sbjct: 421 IFVVLTTLIAMLLPFFNDVVGILGAFGFWPLTVYFPVEMYISQKKIGRWTSRWVALQILS 480

Query: 481 VSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY 512
            +C  I+L AA+GSVAGVVLDLKTYKPFKT Y
Sbjct: 481 FACLLISLAAAVGSVAGVVLDLKTYKPFKTSY 512

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356541032|ref|XP_003538987.1| PREDICTED: LOW QUALITY PROTEIN: amino acid permease 2-like [Glycine max] Back     alignment and taxonomy information
>gi|13676299|gb|AAK33098.1| amino acid transporter [Glycine max] Back     alignment and taxonomy information
>gi|356544864|ref|XP_003540867.1| PREDICTED: amino acid permease 2-like [Glycine max] Back     alignment and taxonomy information
>gi|224103209|ref|XP_002312967.1| amino acid permease [Populus trichocarpa] gi|222849375|gb|EEE86922.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388497910|gb|AFK37021.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255587378|ref|XP_002534252.1| amino acid transporter, putative [Ricinus communis] gi|223525639|gb|EEF28130.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|4138679|emb|CAA70778.1| amino acid transporter [Vicia faba] Back     alignment and taxonomy information
>gi|224083500|ref|XP_002307053.1| amino acid permease [Populus trichocarpa] gi|222856502|gb|EEE94049.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147811503|emb|CAN61092.1| hypothetical protein VITISV_005276 [Vitis vinifera] gi|302141776|emb|CBI18979.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query512
TAIR|locus:2031402476 AAP3 "amino acid permease 3" [ 0.904 0.972 0.692 9.1e-187
TAIR|locus:2184707493 AAP2 "amino acid permease 2" [ 0.949 0.985 0.688 3.1e-186
TAIR|locus:2163981466 AAP4 "amino acid permease 4" [ 0.890 0.978 0.719 2.5e-184
TAIR|locus:2205876480 AAP5 "amino acid permease 5" [ 0.904 0.964 0.655 5.9e-176
TAIR|locus:2168912481 AAP6 "amino acid permease 6" [ 0.884 0.941 0.576 1.4e-149
TAIR|locus:2016600485 AAP1 "amino acid permease 1" [ 0.888 0.938 0.554 1e-146
TAIR|locus:2201871475 AAP8 "amino acid permease 8" [ 0.882 0.951 0.562 1.2e-145
TAIR|locus:2172868467 AAP7 "amino acid permease 7" [ 0.853 0.935 0.497 1.3e-116
TAIR|locus:2013056448 AT1G71680 [Arabidopsis thalian 0.595 0.680 0.286 9.5e-37
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.537 0.623 0.292 1.2e-33
TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1811 (642.6 bits), Expect = 9.1e-187, P = 9.1e-187
 Identities = 325/469 (69%), Positives = 404/469 (86%)

Query:    44 PQANYSNCFDDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFA 103
             PQ   S   DDDG+ KRTG+ WT S+HIITAVIGSGVLSLAWA AQLGW+AGP V++LF+
Sbjct:    14 PQTGGSKYLDDDGKNKRTGSVWTASAHIITAVIGSGVLSLAWATAQLGWLAGPVVMLLFS 73

Query:   104 LVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYT 163
              V  +T++LL+ CYRSGDP++G+RNYTYMDAV++NLGG KV  CG++QYLN+FGVAIGYT
Sbjct:    74 AVTYFTSSLLAACYRSGDPISGKRNYTYMDAVRSNLGGVKVTLCGIVQYLNIFGVAIGYT 133

Query:   164 IAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAA 223
             IA+++SMMAIKRSNCF KSGGKDPCHM+SN YMI FG++++LFSQIPDFDQ+WWLSI+AA
Sbjct:   134 IASAISMMAIKRSNCFHKSGGKDPCHMNSNPYMIAFGLVQILFSQIPDFDQLWWLSILAA 193

Query:   224 IMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAF 283
             +MSFTYS+AGL LGI +V  N   KGSLTGISIG       VT TQK+WR+ QALG IAF
Sbjct:   194 VMSFTYSSAGLALGIAQVVVNGKVKGSLTGISIGA------VTETQKIWRTFQALGDIAF 247

Query:   284 AYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLL 343
             AYS+SIIL+EIQDT++SPP+E KTMKKATL S+ VTT FY+LCGCMGYAAFGDL+P NLL
Sbjct:   248 AYSYSIILIEIQDTVKSPPSEEKTMKKATLVSVSVTTMFYMLCGCMGYAAFGDLSPGNLL 307

Query:   344 TGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPI 403
             TGFGFYNPYWL+DIANAAIV+HL+GAYQV+CQPLFAF+EK ++ ++P S+ +  + +IPI
Sbjct:   308 TGFGFYNPYWLLDIANAAIVIHLIGAYQVYCQPLFAFIEKQASIQFPDSEFIAKDIKIPI 367

Query:   404 PFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQ 463
             P +   +LN+FRL+WRT+FV++TT+ISMLLPFFNDVVG+LGA+GFWPLTVYFP+EMY AQ
Sbjct:   368 PGFKPLRLNVFRLIWRTVFVIITTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQ 427

Query:   464 KKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY 512
             KKI R +TRW+ LQ+ ++ C  +++ AA GS+AGV+LDLK+YKPF++ Y
Sbjct:   428 KKIPRWSTRWVCLQVFSLGCLVVSIAAAAGSIAGVLLDLKSYKPFRSEY 476
GO:0005886 "plasma membrane" evidence=ISM
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0015802 "basic amino acid transport" evidence=RCA;IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006820 "anion transport" evidence=RCA
GO:0006862 "nucleotide transport" evidence=RCA
GO:0006865 "amino acid transport" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015696 "ammonium transport" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0043269 "regulation of ion transport" evidence=RCA
TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FN04AAP4_ARATHNo assigned EC number0.71760.89250.9806nono
Q38967AAP2_ARATHNo assigned EC number0.71480.90230.9371yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00036108001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (512 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query512
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 1e-116
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 1e-07
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  348 bits (896), Expect = e-116
 Identities = 145/442 (32%), Positives = 216/442 (48%), Gaps = 37/442 (8%)

Query: 60  RTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRS 119
            T + W    ++I A+IG+GVLSL +A  QLGW+ G  +L++  L++LYT +LL QC + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 120 GDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCF 179
            D V G+R  +Y D      G K  +       +NLFGV I Y I A  ++ AI  S   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 180 QKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIG 239
                   CH+S   ++I FG+I +  S IP+   +  LS+VAA+ S             
Sbjct: 121 T-------CHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVI-------- 165

Query: 240 KVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIR 299
            +  + +  G LT   +G+L          KL R   A+G I FA+    +LL IQ+T++
Sbjct: 166 -LVLSVAELGVLTAQGVGSL----GAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMK 220

Query: 300 SPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIAN 359
           SP    K M K  L +II+ T  Y+L G +GY AFG+    N+L         WLIDIAN
Sbjct: 221 SPSKF-KAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLP--KSDWLIDIAN 277

Query: 360 AAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWR 419
             +V+HL+ +Y +   P+   VE    +K        A  +            L R+V R
Sbjct: 278 LLLVLHLLLSYPLQAFPIRQIVENLLFRKG-------ASGKHNPKSK------LLRVVIR 324

Query: 420 TLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQ-I 478
           +  VV+T LI++ +PF  D + ++GA    PLT   P   +   KK  + +   L    I
Sbjct: 325 SGLVVITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDI 384

Query: 479 LNVSCFFITLVAAIGSVAGVVL 500
           L+V C  I L+     VAG+++
Sbjct: 385 LDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 512
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PLN03074473 auxin influx permease; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PRK10483414 tryptophan permease; Provisional 99.95
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.94
PRK09664415 tryptophan permease TnaB; Provisional 99.94
PRK15132403 tyrosine transporter TyrP; Provisional 99.93
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.93
PRK13629443 threonine/serine transporter TdcC; Provisional 99.88
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.86
TIGR00814397 stp serine transporter. The HAAAP family includes 99.85
PRK10655438 potE putrescine transporter; Provisional 99.75
PRK10249458 phenylalanine transporter; Provisional 99.73
PRK15049499 L-asparagine permease; Provisional 99.73
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.72
PRK10238456 aromatic amino acid transporter; Provisional 99.72
TIGR00906557 2A0303 cationic amino acid transport permease. 99.71
PRK10644445 arginine:agmatin antiporter; Provisional 99.71
PRK10746461 putative transport protein YifK; Provisional 99.7
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.69
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.69
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.69
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.69
PRK11387471 S-methylmethionine transporter; Provisional 99.68
PRK10836489 lysine transporter; Provisional 99.68
PRK10580457 proY putative proline-specific permease; Provision 99.67
TIGR00930 953 2a30 K-Cl cotransporter. 99.67
TIGR00913478 2A0310 amino acid permease (yeast). 99.67
PRK11021410 putative transporter; Provisional 99.67
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.67
TIGR00909429 2A0306 amino acid transporter. 99.63
TIGR00911501 2A0308 L-type amino acid transporter. 99.63
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.63
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.6
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.58
COG0833541 LysP Amino acid transporters [Amino acid transport 99.52
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.5
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.46
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.4
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.39
COG0531466 PotE Amino acid transporters [Amino acid transport 99.38
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.38
PRK15238496 inner membrane transporter YjeM; Provisional 99.32
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.24
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.2
PF03845320 Spore_permease: Spore germination protein; InterPr 99.06
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.06
KOG3832319 consensus Predicted amino acid transporter [Genera 98.94
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.93
PRK12488549 acetate permease; Provisional 98.41
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.4
PRK11375484 allantoin permease; Provisional 98.39
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.35
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.3
COG3949349 Uncharacterized membrane protein [Function unknown 98.27
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.24
TIGR00813407 sss transporter, SSS family. have different number 98.16
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.15
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.14
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.13
PRK09395551 actP acetate permease; Provisional 98.08
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.08
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 97.87
PRK11017404 codB cytosine permease; Provisional 97.82
PRK15419502 proline:sodium symporter PutP; Provisional 97.8
COG1457442 CodB Purine-cytosine permease and related proteins 97.74
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.7
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.54
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 97.49
PRK00701439 manganese transport protein MntH; Reviewed 97.24
PRK10484523 putative transporter; Provisional 97.13
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.04
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 96.99
KOG1288 945 consensus Amino acid transporters [Amino acid tran 96.93
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.75
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.51
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 96.47
COG4147529 DhlC Predicted symporter [General function predict 96.13
PF01566358 Nramp: Natural resistance-associated macrophage pr 95.98
COG1966575 CstA Carbon starvation protein, predicted membrane 94.57
PRK15015 701 carbon starvation protein A; Provisional 94.12
PRK15433439 branched-chain amino acid transport system 2 carri 93.72
PHA02764399 hypothetical protein; Provisional 93.51
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 92.96
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 92.96
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 92.53
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 92.32
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 92.07
COG0733439 Na+-dependent transporters of the SNF family [Gene 91.57
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 87.98
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 87.74
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 86.89
PRK15433439 branched-chain amino acid transport system 2 carri 80.93
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=7.7e-56  Score=443.58  Aligned_cols=406  Identities=40%  Similarity=0.709  Sum_probs=358.5

Q ss_pred             CCcccccccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 010376           55 DGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA  134 (512)
Q Consensus        55 ~~~~~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l  134 (512)
                      ....+|++|++++.++.+|.++|.|+|++|||+++.||+.|++++++.++++.||+.++.+|++.++.+.++|.+.|.|+
T Consensus        31 ~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl  110 (437)
T KOG1303|consen   31 PITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDL  110 (437)
T ss_pred             ccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence            34456779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcch
Q 010376          135 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQ  214 (512)
Q Consensus       135 ~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~  214 (512)
                      ++++||+++++++.+.+.+.++++|+.|++..+|++..+.+..|.+..      ..+.+.|+++++++.+|++++||++.
T Consensus       111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~  184 (437)
T KOG1303|consen  111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFHS  184 (437)
T ss_pred             HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcch
Confidence            999999999999999999999999999999999999999988765432      23356789999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhH
Q 010376          215 VWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEI  294 (512)
Q Consensus       215 l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i  294 (512)
                      +++.|.++.+..+.+..+.+..++.........+...+  ..++       ++     ..++++|+++|+|.+|..+|+|
T Consensus       185 l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~--~~~~-------~~-----~~f~a~g~iaFaf~gH~v~peI  250 (437)
T KOG1303|consen  185 LSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYL--DLGT-------IP-----TVFTALGIIAFAYGGHAVLPEI  250 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcc--cCCC-------Cc-----chhhhhhheeeeecCCeeeeeh
Confidence            99999999999998888888777766644322222111  1111       00     1189999999999999999999


Q ss_pred             HhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCcccccccccCCChHHHHHHHHHHHHHHHHhhhhhc
Q 010376          295 QDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFC  374 (512)
Q Consensus       295 ~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~i~~~~~~i~~~~s~pl~~  374 (512)
                      +++||+|    ++|+|++.+++.+++++|..++++||++||++++++++.|++  .|.|+...+++++.+|++.+++++.
T Consensus       251 q~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a  324 (437)
T KOG1303|consen  251 QHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYA  324 (437)
T ss_pred             HhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhh
Confidence            9999999    679999999999999999999999999999999999999975  6899999999999999999999999


Q ss_pred             cchHHHHHHHhhccCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhhhh
Q 010376          375 QPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVY  454 (512)
Q Consensus       375 ~p~~~~l~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~fi  454 (512)
                      .|+.+.+|+.....+++  +            ++ +....|.+.|+.+++.+.++|+.+|+|+++++++||+....++++
T Consensus       325 ~pl~~~~E~~~~~~~~~--~------------~~-~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~i  389 (437)
T KOG1303|consen  325 QPLFDVVEKLIGVKHPD--F------------KK-RSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFI  389 (437)
T ss_pred             cchHHHHHHHhccCCcc--c------------cc-cccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHH
Confidence            99999999987554332  0            11 133678999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhccCCCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 010376          455 FPIEMYKAQKKIGRGTTRWLGLQIL-NVSCFFITLVAAIGSVAGVVLD  501 (512)
Q Consensus       455 ~P~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~si~~i~~~  501 (512)
                      +|+++|++.+|.++...+|...+.+ .++++++++....++++.++.+
T Consensus       390 lP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  390 LPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            9999999999999888899988888 6999999999999999988754

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query512
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.8
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.65
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.54
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.62
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.33
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.85
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.80  E-value=4.1e-17  Score=168.24  Aligned_cols=364  Identities=10%  Similarity=0.013  Sum_probs=207.6

Q ss_pred             cccccccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 010376           57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK  136 (512)
Q Consensus        57 ~~~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~  136 (512)
                      +++|+.|.++.++..+++++|+|++.+|....+.|.. +++..++.++++...+..+.|...+.+. .|    .+.+..+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~-~G----g~y~~~~   78 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS-PG----GSYAYAR   78 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC-TT----THHHHHH
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC-CC----CchhhHH
Confidence            3567889999999999999999999999998888975 7888889999999999999998776543 22    3444456


Q ss_pred             HhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhh
Q 010376          137 ANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVW  216 (512)
Q Consensus       137 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~  216 (512)
                      +.+||+.+++..|..++.......++....++.+..+++..           . ......++..++++.+..+ ++...+
T Consensus        79 ~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~i-n~~g~~  145 (445)
T 3l1l_A           79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----------K-DPWVLTITCVVVLWIFVLL-NIVGPK  145 (445)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-----------G-SHHHHHHHHHHHHHHHHHH-HHHCHH
T ss_pred             hHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-----------c-ccHHHHHHHHHHHHHHHHH-HHhchH
Confidence            77999999999999999887777788877777776554310           0 0011111111111111111 333444


Q ss_pred             HHHHHHHHHHH---HHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHh
Q 010376          217 WLSIVAAIMSF---TYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLE  293 (512)
Q Consensus       217 ~~s~~~~~~~~---~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~  293 (512)
                      ..+.+..+...   ..+++++..++... +.+...   +..  .       +....++.++..++....|+|.|+..+..
T Consensus       146 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~-~~~~~~---~~~--~-------~~~~~~~~~~~~~~~~~~~af~G~e~~~~  212 (445)
T 3l1l_A          146 MITRVQAVATVLALIPIVGIAVFGWFWF-RGETYM---AAW--N-------VSGLGTFGAIQSTLNVTLWSFIGVESASV  212 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSTTC-CCCCCC---CC--------------------HHHHHHHHHHTTTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-Chhhcc---ccc--C-------ccCCccHHHHHHHHHHHHHHHHhHHHHHH
Confidence            44444443333   22222222222211 111110   111  0       11112345778889999999999999999


Q ss_pred             HHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCc----ccccccccCCChHHHHHHHHHHHHHHHHh
Q 010376          294 IQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPN----NLLTGFGFYNPYWLIDIANAAIVVHLVGA  369 (512)
Q Consensus       294 i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~----~il~~~~~~~~~~~~~i~~~~~~i~~~~s  369 (512)
                      +.+|+|||+   |+.+|++..+..+++++|++..+......+.+.-.    +...-+......+...+..+...+....+
T Consensus       213 ~~~e~k~p~---r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~  289 (445)
T 3l1l_A          213 AAGVVKNPK---RNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGS  289 (445)
T ss_dssp             GGGGBSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTT
T ss_pred             HHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            999999996   89999999999999999999888877777643211    11110000011233445555555555555


Q ss_pred             hhhhccchHHHHHHHhhc-cCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhcc----chHHHHHHhh
Q 010376          370 YQVFCQPLFAFVEKWSAK-KWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP----FFNDVVGILG  444 (512)
Q Consensus       370 ~pl~~~p~~~~l~~~~~~-~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp----~~~~i~~l~G  444 (512)
                      .--.....-+.+...-.+ ..|+  ...+..+.+.|         .+-.+-...+.....+....|    .++.+.++.+
T Consensus       290 ~~~~~~~~sR~~~~~a~dg~lP~--~~~~~~~~~~P---------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  358 (445)
T 3l1l_A          290 LGGWTLLAGQTAKAAADDGLFPP--IFARVNKAGTP---------VAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV  358 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSCG--GGGCCCTTCCC---------HHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCcH--HHHhcCCCCCC---------HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            433333333444433221 1221  11111111222         111111111111111111123    3566666654


Q ss_pred             hhhhhhhhhhhhhhhhhhhccCCC
Q 010376          445 AMGFWPLTVYFPIEMYKAQKKIGR  468 (512)
Q Consensus       445 a~~~~~l~fi~P~~~~l~~~~~~~  468 (512)
                        .+..+.|.++++.+++.++++.
T Consensus       359 --~~~~~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          359 --IFTLVPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             --HHHHHHHHHHHHHHHHHHSSSS
T ss_pred             --HHHHHHHHHHHHHHHHHhhcCc
Confidence              4566899999999998876543
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00