Citrus Sinensis ID: 010427

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-
MALAPTENVVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYLVILGMLIALLMGLNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLALIRG
ccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHcHHHHHHccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHcccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccHHHcHHHHHHHHHHHHHcccccccEEHHHHHHHHHHHHHHHHHHHHHHHcc
malaptenvvlGSFAFVIFWILAvfpavpflpigrTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALssalftndtcCVILTEFVLKIArqngvsphPFLLALASsanvgssatpignpQNLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILsvkkdeesafaedddtsphcfspmcmssinvndskcgnskrrrslsendlcnlsggefestqnsvasKDQAAEIIVARGdielgvspklaegkkdntqkwdwkrvswKTCTYLVILGMLIALLMGLNMSWTALTAALVLVVLDfkdampcldkvSYSLLIFFCGMFITvegfnktgipstlwtlmepharinrvGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQarrskpsgytlsfwthlkfglpSTIVITAIGLALIRG
malaptenVVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGefestqnsvaSKDQAAEIIVARgdielgvspklaegkkdntqkwdwkrvsWKTCTYLVILGMLIALLMGLNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWthlkfglpstIVITAIGLALIRG
MALAPTENVVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYlvilgmliallmglNMSWtaltaalvlvvlDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRvggisilaiiilvlsnvaSNVPTVLLLGARVaasagaiseseekkaWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLALIRG
*******NVVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVK*********************************************************************EIIVARGDIELGVS*********NTQKWDWKRVSWKTCTYLVILGMLIALLMGLNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLALI**
******E*VVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYLVILGMLIALLMGLNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLALIRG
MALAPTENVVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKD***********SPHCFSPMCMSSINVN**************ENDLCNLSGGE**********KDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYLVILGMLIALLMGLNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLALIRG
****PTENVVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVND*K*******RSLSENDLCNLSGGEFESTQNSVASKD****IIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYLVILGMLIALLMGLNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLALIRG
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoo
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHii
oooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
iiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALAPTENVVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYLVILGMLIALLMGLNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLALIRG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query511 2.2.26 [Sep-21-2011]
Q54GU0563 Putative transporter arsB yes no 0.906 0.822 0.324 6e-63
Q04671838 P protein OS=Homo sapiens yes no 0.819 0.5 0.225 5e-16
P0A607429 Uncharacterized transport yes no 0.352 0.419 0.290 7e-16
P0A606429 Uncharacterized transport yes no 0.352 0.419 0.290 7e-16
O07187428 Uncharacterized transport no no 0.309 0.369 0.319 1e-15
Q8MIQ9845 P protein OS=Sus scrofa G yes no 0.816 0.493 0.222 1e-15
P46838429 46 kDa membrane protein O yes no 0.309 0.368 0.306 5e-15
Q62052833 P protein OS=Mus musculus yes no 0.812 0.498 0.221 1e-14
P75788372 Inner membrane protein Yb N/A no 0.183 0.252 0.304 5e-08
P74635449 Uncharacterized transport N/A no 0.356 0.405 0.282 1e-07
>sp|Q54GU0|ARSB_DICDI Putative transporter arsB OS=Dictyostelium discoideum GN=arsB PE=2 SV=1 Back     alignment and function desciption
 Score =  242 bits (617), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 165/509 (32%), Positives = 273/509 (53%), Gaps = 46/509 (9%)

Query: 31  LPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEI 90
           LPIGR   +++GA LM+ F +I P+E  + I+   + LL   M++S Y+E+A ++     
Sbjct: 66  LPIGRAGSSIIGATLMVYFGIIQPKEIGSVINWDTIILLMSMMMLSNYMEQANIWGMASK 125

Query: 91  VLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALAS 150
           +L W+ +     + R+C IS++ S++ TNDT CV LT  V+   +   ++  PFL+A+A+
Sbjct: 126 ILLWKCKSTSIFMVRVCLISSIMSSILTNDTVCVTLTPIVISACKSTNLTFFPFLMAIAT 185

Query: 151 SANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVK 210
           SAN+GSSA P+GNPQN++IA   G++F  F    + S ++GV +NT++LL  + + L   
Sbjct: 186 SANIGSSALPVGNPQNMIIATAGGLNFFNFFKVSIVSSILGVCLNTILLLLYFKKDL--- 242

Query: 211 KDEESAF----------AEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNL 260
           K+  S F           E+ D + H        S N  + +  N +       ND  + 
Sbjct: 243 KNLNSNFNQLIETVNPKVEEIDNNHHDDDGANNQSKNEKEMENINKEVEEEQHNNDDDDD 302

Query: 261 SGGEFESTQNSVASKDQAAEIIVARGD-IELGVSPKLAEGKKDNTQ----KWDWKRVSWK 315
            G  F   +N+  +   A  ++ +  D I+L     + + KK         ++ K  S +
Sbjct: 303 DG--FNENKNNNNNGGHAILLVASSMDSIDLSDCSIINKDKKKKENFIEIYFNSKEKSIE 360

Query: 316 TCTYLVILG-----------MLIALLMGLNMSWTALTAALVLVVLDFKDAMPCLDKVSYS 364
           T   ++ L            +LI   +G++M +T L    +L++ + KD    ++ V + 
Sbjct: 361 TIVNIIKLIFKFRVAIILTLVLIGFFIGMHMGFTVLFGVSILMICERKDITDIINSVDWE 420

Query: 365 LLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARIN----RVGGISILAIIILVLSNVASN 420
           LL+FF G+F+ VEGF++       WT++EP   I+     V  I I +I+ILVL N+  N
Sbjct: 421 LLLFFSGLFVLVEGFDRQ-FEKEAWTILEPFVPIDSTHLNVLKIFIFSILILVLCNILGN 479

Query: 421 VPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKP 480
           VP VL L  R+  +            W++LA+VSTVAGNL+L+GS ANLIV E+++    
Sbjct: 480 VPLVLSLSPRLLEALAP------DFTWILLAFVSTVAGNLTLVGSVANLIVAEKSK---- 529

Query: 481 SGYTLSFWTHLKFGLPSTIVITAIGLALI 509
           S + + F  +LKFG+PSTI++  IG+ ++
Sbjct: 530 SYHEIGFLEYLKFGVPSTILVILIGVPIV 558

Dictyostelium discoideum (taxid: 44689)
>sp|Q04671|P_HUMAN P protein OS=Homo sapiens GN=OCA2 PE=1 SV=2 Back     alignment and function description
>sp|P0A607|Y2703_MYCBO Uncharacterized transporter Mb2703 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb2703 PE=3 SV=1 Back     alignment and function description
>sp|P0A606|Y2684_MYCTU Uncharacterized transporter Rv2684/MT2758 OS=Mycobacterium tuberculosis GN=Rv2684 PE=3 SV=1 Back     alignment and function description
>sp|O07187|Y2685_MYCTU Uncharacterized transporter Rv2685/MT2759 OS=Mycobacterium tuberculosis GN=Rv2685 PE=3 SV=1 Back     alignment and function description
>sp|Q8MIQ9|P_PIG P protein OS=Sus scrofa GN=Oca2 PE=2 SV=3 Back     alignment and function description
>sp|P46838|AG45_MYCLE 46 kDa membrane protein OS=Mycobacterium leprae (strain TN) GN=ag45 PE=3 SV=2 Back     alignment and function description
>sp|Q62052|P_MOUSE P protein OS=Mus musculus GN=Oca2 PE=1 SV=1 Back     alignment and function description
>sp|P75788|YBIR_ECOLI Inner membrane protein YbiR OS=Escherichia coli (strain K12) GN=ybiR PE=1 SV=1 Back     alignment and function description
>sp|P74635|Y753_SYNY3 Uncharacterized transporter slr0753 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0753 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query511
359474003569 PREDICTED: putative transporter arsB iso 1.0 0.898 0.654 0.0
225430069544 PREDICTED: putative transporter arsB iso 0.998 0.937 0.656 0.0
255545230564 arsenite transport protein, putative [Ri 0.994 0.900 0.625 0.0
225464519549 PREDICTED: putative transporter arsB iso 0.996 0.927 0.666 0.0
224144068504 predicted protein [Populus trichocarpa] 0.968 0.982 0.649 0.0
357515047544 Transporter, putative [Medicago truncatu 0.996 0.935 0.629 0.0
42561620502 Divalent ion symporter [Arabidopsis thal 0.954 0.972 0.645 0.0
449446019547 PREDICTED: putative transporter arsB-lik 0.992 0.926 0.612 0.0
449485519547 PREDICTED: putative transporter arsB-lik 0.992 0.926 0.610 0.0
327187686529 silicon efflux transporter CmLsi2-2 [Cuc 0.994 0.960 0.636 0.0
>gi|359474003|ref|XP_002276077.2| PREDICTED: putative transporter arsB isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/559 (65%), Positives = 431/559 (77%), Gaps = 48/559 (8%)

Query: 1   MALAPTENVVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAA 60
           M LAPTE VVLGS AF IFW+LAVFPAVPFLPIGRTAG+LLGA+LM+IF+VITP++A+AA
Sbjct: 11  MVLAPTEKVVLGSIAFAIFWVLAVFPAVPFLPIGRTAGSLLGAILMVIFRVITPDQAYAA 70

Query: 61  IDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTND 120
           IDLS+LGLLFGTMVVS YLE+A MFKYL ++L W+S+GAKDLLCRIC +SA+SSA FTND
Sbjct: 71  IDLSILGLLFGTMVVSVYLEQADMFKYLGVLLLWKSKGAKDLLCRICVVSAISSAFFTND 130

Query: 121 TCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKF 180
           T CV+LTEFVLKIA QN V PHPFLLALAS+AN+GSSATPIGNPQNLVIA+QS +SFG+F
Sbjct: 131 TSCVVLTEFVLKIAEQNNVPPHPFLLALASNANIGSSATPIGNPQNLVIAIQSSLSFGEF 190

Query: 181 LLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAE---DDDTSPHCFSPMCMSSIN 237
           LLG+LP+MLVGVFVN LILLCMYWR+LSV+KDEE A  E   ++D + H FSP  MS   
Sbjct: 191 LLGLLPAMLVGVFVNALILLCMYWRLLSVEKDEEHALDEVISEEDAASHRFSPAAMSHPT 250

Query: 238 VNDSKCGN--------------------SKRRRSLSENDLCNLSG---GEFESTQNSVAS 274
            ++S+  N                    ++  R+ + +   NL G   G  E T+NS AS
Sbjct: 251 ASNSQELNPVLEPMNTWGSPSSNGSTIHTETLRNRAGSKQSNLQGTLNGGVELTRNSSAS 310

Query: 275 KD--------QAAEIIVARGDIE---LGVSPKLAEGKKDNT-----------QKWDWKRV 312
           K+        Q  E       +E   L  S ++    +++T               WKR+
Sbjct: 311 KEGVVGDDFPQPREQDFHSRRVEKSALNGSDEMVNVDEEDTVPVQPLEENESSAKPWKRL 370

Query: 313 SWKTCTYLVILGMLIALLMGLNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGM 372
            WKTC YLV +GMLIALL+GLNMSWTALTAAL LVVLDFKDA PCL KVSYS+LIFFCGM
Sbjct: 371 LWKTCVYLVTIGMLIALLVGLNMSWTALTAALALVVLDFKDAQPCLQKVSYSILIFFCGM 430

Query: 373 FITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVA 432
           FITV+GFN+TGIPSTLW L EP+ARIN VGGI +L ++ILVLSNVASNVPTVLLLGARVA
Sbjct: 431 FITVDGFNRTGIPSTLWNLTEPYARINHVGGIVVLTLVILVLSNVASNVPTVLLLGARVA 490

Query: 433 ASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLK 492
           ASA   S+ +EK+AWLILAWVSTVAGNLSLLGSAANLIVCEQARR++  GYTLSFW+HLK
Sbjct: 491 ASATMTSQGQEKRAWLILAWVSTVAGNLSLLGSAANLIVCEQARRARFFGYTLSFWSHLK 550

Query: 493 FGLPSTIVITAIGLALIRG 511
           FG+PST+++TAIGL LIRG
Sbjct: 551 FGVPSTLIVTAIGLLLIRG 569

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225430069|ref|XP_002284453.1| PREDICTED: putative transporter arsB isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255545230|ref|XP_002513676.1| arsenite transport protein, putative [Ricinus communis] gi|223547584|gb|EEF49079.1| arsenite transport protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225464519|ref|XP_002270615.1| PREDICTED: putative transporter arsB isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224144068|ref|XP_002336106.1| predicted protein [Populus trichocarpa] gi|222872784|gb|EEF09915.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357515047|ref|XP_003627812.1| Transporter, putative [Medicago truncatula] gi|92885111|gb|ABE87631.1| transporter, putative [Medicago truncatula] gi|355521834|gb|AET02288.1| Transporter, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|42561620|ref|NP_171728.2| Divalent ion symporter [Arabidopsis thaliana] gi|3258575|gb|AAC24385.1| Hypothetical protein [Arabidopsis thaliana] gi|66792704|gb|AAY56454.1| At1g02260 [Arabidopsis thaliana] gi|332189286|gb|AEE27407.1| Divalent ion symporter [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449446019|ref|XP_004140769.1| PREDICTED: putative transporter arsB-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449485519|ref|XP_004157196.1| PREDICTED: putative transporter arsB-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|327187686|dbj|BAK09178.1| silicon efflux transporter CmLsi2-2 [Cucurbita moschata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query511
TAIR|locus:2204858502 AT1G02260 "AT1G02260" [Arabido 0.954 0.972 0.574 9.6e-144
DICTYBASE|DDB_G0289879563 arsB "arsenite transport subun 0.340 0.309 0.388 1.6e-55
TIGR_CMR|CHY_2020423 CHY_2020 "arsenic transporter 0.395 0.477 0.333 3.5e-26
TIGR_CMR|CHY_1321425 CHY_1321 "arsenic transporter 0.377 0.454 0.285 1.3e-25
TIGR_CMR|CHY_2019425 CHY_2019 "arsenic transporter 0.367 0.442 0.291 2.1e-25
TIGR_CMR|BA_5143444 BA_5143 "arsenical pump family 0.387 0.445 0.303 4.2e-22
TIGR_CMR|BA_3526441 BA_3526 "arsenical pump family 0.365 0.424 0.293 5.4e-20
FB|FBgn0041150846 hoe1 "hoepel1" [Drosophila mel 0.365 0.221 0.281 2.3e-18
FB|FBgn0036329702 CG11262 [Drosophila melanogast 0.416 0.303 0.262 1.1e-16
UNIPROTKB|Q04671838 OCA2 "P protein" [Homo sapiens 0.379 0.231 0.280 1.7e-15
TAIR|locus:2204858 AT1G02260 "AT1G02260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1405 (499.6 bits), Expect = 9.6e-144, P = 9.6e-144
 Identities = 301/524 (57%), Positives = 357/524 (68%)

Query:     1 MALAPTENVVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAA 60
             MA+AP   +VLGS AF IFWILAVFP+VPFLPIGRTAG+L GAMLM+IF+VITPE+A+AA
Sbjct:     1 MAMAPVIKLVLGSVAFAIFWILAVFPSVPFLPIGRTAGSLFGAMLMVIFQVITPEQAYAA 60

Query:    61 IDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTND 120
             IDL +LGLLFGTMVVS YLERA MFKYL  +LSW+SRG KDLLCR+C +SA+SSALFTND
Sbjct:    61 IDLPILGLLFGTMVVSIYLERADMFKYLGTLLSWKSRGPKDLLCRVCLVSAVSSALFTND 120

Query:   121 TCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKF 180
             T CV+LTEFVLKIARQ  + PHPFLLALA+SAN+GSSATPIGNPQNLVIA+QS I F +F
Sbjct:   121 TSCVVLTEFVLKIARQKNLPPHPFLLALATSANIGSSATPIGNPQNLVIAVQSKIPFWEF 180

Query:   181 LLGILPSMLVGVFVNTLILLCMYWRILSV-KKDEE------SAFAEDDDTSPHCFSPMCM 233
             LLG+ P+M+VG+ VN ++LL MYWR+LS  K+DEE      S     +D   H FSP   
Sbjct:   181 LLGVFPAMIVGITVNAMLLLGMYWRLLSDHKEDEEEVQNADSEVVAQEDVQSHRFSPATF 240

Query:   234 SSINVNDSKCGNSKRRRSLSENDLCNLSG--GEFESTQ-NSVASKDQAAEIIVARGDIEL 290
             S ++  DS       R   +E  L N +G  GE E    NS AS++Q         D E 
Sbjct:   241 SPVSSEDSNL-----RMDAAET-LRNRAGSAGESELISCNSNASREQ-------HNDAE- 286

Query:   291 GVSPKLAEGKKDNT----QKWDWKRVSWKTCTYXXXXXXXXXXXXXXNMSWXXXXXXXXX 346
                   ++G+ +NT    Q   W+RV WK+  Y              NMSW         
Sbjct:   287 ------SQGESNNTNNMFQTKRWRRVLWKSSVYFITLGMLISLLMGLNMSWTAITAALAL 340

Query:   347 XXXDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRXXXXXX 406
                DFKDA P L+KVSYSLLIFFCGMFITV+GFNKTGIP+ LW LMEP+A+I++      
Sbjct:   341 VVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPTALWDLMEPYAKIDQAKGIAV 400

Query:   407 XXXXXXXXXXXXSNVPTVLLLGARVXXXXXXXXXXXXXXXWLILAWVSTVAGNLSLLGSA 466
                         SNVPTVLLLGARV               WL+LAWVSTVAGNL+LLGSA
Sbjct:   401 LAVVILVLSNVASNVPTVLLLGARVAASAMGREEEKKA--WLLLAWVSTVAGNLTLLGSA 458

Query:   467 ANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLALIR 510
             ANLIVCEQARR+   GYTL+F  H KFGLPST+++TAIGL LI+
Sbjct:   459 ANLIVCEQARRAVSHGYTLTFTKHFKFGLPSTLIVTAIGLFLIK 502
GO:0005215 "transporter activity" evidence=ISS
GO:0015137 "citrate transmembrane transporter activity" evidence=IEA
GO:0015746 "citrate transport" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
DICTYBASE|DDB_G0289879 arsB "arsenite transport subunit B" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2020 CHY_2020 "arsenic transporter family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1321 CHY_1321 "arsenic transporter family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2019 CHY_2019 "arsenic transporter family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5143 BA_5143 "arsenical pump family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3526 BA_3526 "arsenical pump family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
FB|FBgn0041150 hoe1 "hoepel1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0036329 CG11262 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q04671 OCA2 "P protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54GU0ARSB_DICDINo assigned EC number0.32410.90600.8223yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
PLN00136482 PLN00136, PLN00136, silicon transporter; Provision 0.0
cd01117384 cd01117, YbiR_permease, Putative anion permease Yb 3e-61
cd01117384 cd01117, YbiR_permease, Putative anion permease Yb 6e-50
cd00625396 cd00625, ArsB_NhaD_permease, Anion permease ArsB/N 2e-40
pfam03600377 pfam03600, CitMHS, Citrate transporter 4e-40
COG1055424 COG1055, ArsB, Na+/H+ antiporter NhaD and related 4e-34
cd00625396 cd00625, ArsB_NhaD_permease, Anion permease ArsB/N 5e-30
cd01116413 cd01116, P_permease, Permease P (pink-eyed dilutio 3e-29
pfam03600377 pfam03600, CitMHS, Citrate transporter 2e-25
COG1055424 COG1055, ArsB, Na+/H+ antiporter NhaD and related 2e-20
cd01116413 cd01116, P_permease, Permease P (pink-eyed dilutio 2e-17
cd01118416 cd01118, ArsB_permease, Anion permease ArsB 3e-16
cd01116413 cd01116, P_permease, Permease P (pink-eyed dilutio 5e-13
cd01115382 cd01115, SLC13_permease, Permease SLC13 (solute ca 5e-12
cd00625396 cd00625, ArsB_NhaD_permease, Anion permease ArsB/N 1e-10
cd01118416 cd01118, ArsB_permease, Anion permease ArsB 7e-10
cd01115382 cd01115, SLC13_permease, Permease SLC13 (solute ca 1e-09
COG1055424 COG1055, ArsB, Na+/H+ antiporter NhaD and related 2e-09
pfam02040423 pfam02040, ArsB, Arsenical pump membrane protein 3e-08
COG0471461 COG0471, CitT, Di- and tricarboxylate transporters 8e-07
cd01115 382 cd01115, SLC13_permease, Permease SLC13 (solute ca 3e-05
PRK15445427 PRK15445, PRK15445, arsenical pump membrane protei 1e-04
TIGR00935426 TIGR00935, 2a45, arsenite/antimonite efflux pump m 1e-04
TIGR00774515 TIGR00774, NhaB, Na+/H+ antiporter NhaB 2e-04
COG3067516 COG3067, NhaB, Na+/H+ antiporter [Inorganic ion tr 2e-04
COG0471461 COG0471, CitT, Di- and tricarboxylate transporters 5e-04
TIGR00935426 TIGR00935, 2a45, arsenite/antimonite efflux pump m 5e-04
cd00625 396 cd00625, ArsB_NhaD_permease, Anion permease ArsB/N 8e-04
pfam06450515 pfam06450, NhaB, Bacterial Na+/H+ antiporter B (Nh 0.001
PLN00137424 PLN00137, PLN00137, NHAD transporter family protei 0.002
>gnl|CDD|215070 PLN00136, PLN00136, silicon transporter; Provisional Back     alignment and domain information 
 Score =  557 bits (1437), Expect = 0.0
 Identities = 279/517 (53%), Positives = 367/517 (70%), Gaps = 48/517 (9%)

Query: 1   MALAPTENVVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAA 60
           MALA    VVLGS AF +FW+LAVFP+VPFLPIGRTAGALL A+LMI+F VI+P++A+A+
Sbjct: 1   MALASLPKVVLGSLAFGVFWMLAVFPSVPFLPIGRTAGALLSAVLMIVFHVISPDDAYAS 60

Query: 61  IDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTND 120
           IDL +LGLLF TMVV  YL+ AGMFK+L  +L+WRS+G +DLLCR+C ++AL+SALFTND
Sbjct: 61  IDLPILGLLFATMVVGSYLKNAGMFKHLGRLLAWRSQGGRDLLCRVCVVTALASALFTND 120

Query: 121 TCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKF 180
           TCCV+LTEFVL++A +  +   PFLLALASSAN+GSSATPIGNPQNLVIA  S I+F KF
Sbjct: 121 TCCVVLTEFVLELAAERNLPAKPFLLALASSANIGSSATPIGNPQNLVIAFNSKITFPKF 180

Query: 181 LLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVND 240
           LLGILP+ML G+ VN ++LLCMYW+                              ++   
Sbjct: 181 LLGILPAMLAGMAVNMVMLLCMYWK-----------------------------DLDGGA 211

Query: 241 SKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGK 300
               + K+  ++ E        G   ++  S   +  A       GD    +S  ++E  
Sbjct: 212 ELSVDGKQMEAVEE--------GRSPASAKSTKQQSPALLQAGLNGDGNGDMSSMMSE-- 261

Query: 301 KDNTQKWDW--------KRVSWKTCTYLVILGMLIALLMGLNMSWTALTAALVLVVLDFK 352
            + + K  W        +++  K+  Y+V +GM++A ++GLNMSWTA+T A+ LVV+DF+
Sbjct: 262 -NISTKHPWFMQCTEHRRKLFLKSFAYVVTVGMVVAYMVGLNMSWTAITTAIALVVVDFR 320

Query: 353 DAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIIL 412
           DA PCLD VSYSLL+FF GMFITV GFNKTG+P  +W  M P++++N VGGIS+L++IIL
Sbjct: 321 DAEPCLDTVSYSLLVFFSGMFITVSGFNKTGLPGAIWNFMAPYSKVNSVGGISVLSVIIL 380

Query: 413 VLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVC 472
           +LSN+ASNVPTVLL+G  VAA+A  IS +   ++WL+LAWVSTVAGNLSLLGSAANLIVC
Sbjct: 381 LLSNLASNVPTVLLMGDEVAAAAALISPAAVTRSWLLLAWVSTVAGNLSLLGSAANLIVC 440

Query: 473 EQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLALI 509
           EQARR+  + Y L+FW H+ FG+PST+++TAIG+ LI
Sbjct: 441 EQARRAPRNAYDLTFWQHIVFGVPSTLIVTAIGIPLI 477

Length = 482
>gnl|CDD|238537 cd01117, YbiR_permease, Putative anion permease YbiR Back     alignment and domain information
>gnl|CDD|238537 cd01117, YbiR_permease, Putative anion permease YbiR Back     alignment and domain information
>gnl|CDD|238344 cd00625, ArsB_NhaD_permease, Anion permease ArsB/NhaD Back     alignment and domain information
>gnl|CDD|217633 pfam03600, CitMHS, Citrate transporter Back     alignment and domain information
>gnl|CDD|223983 COG1055, ArsB, Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|238344 cd00625, ArsB_NhaD_permease, Anion permease ArsB/NhaD Back     alignment and domain information
>gnl|CDD|238536 cd01116, P_permease, Permease P (pink-eyed dilution) Back     alignment and domain information
>gnl|CDD|217633 pfam03600, CitMHS, Citrate transporter Back     alignment and domain information
>gnl|CDD|223983 COG1055, ArsB, Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|238536 cd01116, P_permease, Permease P (pink-eyed dilution) Back     alignment and domain information
>gnl|CDD|238538 cd01118, ArsB_permease, Anion permease ArsB Back     alignment and domain information
>gnl|CDD|238536 cd01116, P_permease, Permease P (pink-eyed dilution) Back     alignment and domain information
>gnl|CDD|238535 cd01115, SLC13_permease, Permease SLC13 (solute carrier 13) Back     alignment and domain information
>gnl|CDD|238344 cd00625, ArsB_NhaD_permease, Anion permease ArsB/NhaD Back     alignment and domain information
>gnl|CDD|238538 cd01118, ArsB_permease, Anion permease ArsB Back     alignment and domain information
>gnl|CDD|238535 cd01115, SLC13_permease, Permease SLC13 (solute carrier 13) Back     alignment and domain information
>gnl|CDD|223983 COG1055, ArsB, Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|110986 pfam02040, ArsB, Arsenical pump membrane protein Back     alignment and domain information
>gnl|CDD|223547 COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|238535 cd01115, SLC13_permease, Permease SLC13 (solute carrier 13) Back     alignment and domain information
>gnl|CDD|185342 PRK15445, PRK15445, arsenical pump membrane protein; Provisional Back     alignment and domain information
>gnl|CDD|213571 TIGR00935, 2a45, arsenite/antimonite efflux pump membrane protein Back     alignment and domain information
>gnl|CDD|129856 TIGR00774, NhaB, Na+/H+ antiporter NhaB Back     alignment and domain information
>gnl|CDD|225609 COG3067, NhaB, Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|223547 COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|213571 TIGR00935, 2a45, arsenite/antimonite efflux pump membrane protein Back     alignment and domain information
>gnl|CDD|238344 cd00625, ArsB_NhaD_permease, Anion permease ArsB/NhaD Back     alignment and domain information
>gnl|CDD|148201 pfam06450, NhaB, Bacterial Na+/H+ antiporter B (NhaB) Back     alignment and domain information
>gnl|CDD|215071 PLN00137, PLN00137, NHAD transporter family protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 511
PLN00136482 silicon transporter; Provisional 100.0
KOG2639685 consensus Sodium sulfate symporter and related ars 100.0
COG1055424 ArsB Na+/H+ antiporter NhaD and related arsenite p 100.0
PRK15445427 arsenical pump membrane protein; Provisional 100.0
cd01118416 ArsB_permease Anion permease ArsB. These permeases 100.0
PLN00137424 NHAD transporter family protein; Provisional 100.0
cd01117384 YbiR_permease Putative anion permease YbiR. Based 100.0
TIGR00935429 2a45 arsenical pump membrane protein. 100.0
TIGR00775420 NhaD Na+/H+ antiporter, NhaD family. These protein 100.0
PF02040423 ArsB: Arsenical pump membrane protein; InterPro: I 100.0
PRK09547513 nhaB sodium/proton antiporter; Reviewed 100.0
cd01116413 P_permease Permease P (pink-eyed dilution). Mutati 100.0
TIGR00785444 dass anion transporter. Functionally characterized 100.0
cd00625396 ArsB_NhaD_permease Anion permease ArsB/NhaD. These 100.0
cd01115382 SLC13_permease Permease SLC13 (solute carrier 13). 100.0
TIGR00774515 NhaB Na+/H+ antiporter NhaB. These proteins are me 100.0
COG0471461 CitT Di- and tricarboxylate transporters [Inorgani 100.0
PF00939471 Na_sulph_symp: Sodium:sulfate symporter transmembr 100.0
PF03600351 CitMHS: Citrate transporter; InterPro: IPR004680 C 100.0
TIGR00784431 citMHS citrate transporter, CitMHS family. This fa 99.97
KOG1281586 consensus Na+/dicarboxylate, Na+/tricarboxylate an 99.94
PRK09412433 anaerobic C4-dicarboxylate transporter; Reviewed 99.87
cd01116413 P_permease Permease P (pink-eyed dilution). Mutati 99.86
TIGR00786405 dctM TRAP transporter, DctM subunit. force-depende 99.84
PRK15445427 arsenical pump membrane protein; Provisional 99.84
cd01115382 SLC13_permease Permease SLC13 (solute carrier 13). 99.84
PLN00136 482 silicon transporter; Provisional 99.83
TIGR00935429 2a45 arsenical pump membrane protein. 99.83
TIGR00785444 dass anion transporter. Functionally characterized 99.82
COG0471461 CitT Di- and tricarboxylate transporters [Inorgani 99.79
PRK12489443 anaerobic C4-dicarboxylate transporter; Reviewed 99.78
cd01118 416 ArsB_permease Anion permease ArsB. These permeases 99.78
TIGR00770430 Dcu anaerobic c4-dicarboxylate membrane transporte 99.78
PF00939471 Na_sulph_symp: Sodium:sulfate symporter transmembr 99.78
COG1055424 ArsB Na+/H+ antiporter NhaD and related arsenite p 99.77
PRK09547513 nhaB sodium/proton antiporter; Reviewed 99.76
cd01117 384 YbiR_permease Putative anion permease YbiR. Based 99.71
KOG2639685 consensus Sodium sulfate symporter and related ars 99.7
PF03600 351 CitMHS: Citrate transporter; InterPro: IPR004680 C 99.66
cd00625 396 ArsB_NhaD_permease Anion permease ArsB/NhaD. These 99.65
PLN00137424 NHAD transporter family protein; Provisional 99.57
TIGR00775420 NhaD Na+/H+ antiporter, NhaD family. These protein 99.55
PRK10654455 dcuC C4-dicarboxylate transporter DcuC; Provisiona 99.54
KOG1281586 consensus Na+/dicarboxylate, Na+/tricarboxylate an 99.46
TIGR00771388 DcuC c4-dicarboxylate anaerobic carrier family pro 99.45
PF02040423 ArsB: Arsenical pump membrane protein; InterPro: I 99.44
TIGR00784431 citMHS citrate transporter, CitMHS family. This fa 99.39
TIGR00774515 NhaB Na+/H+ antiporter NhaB. These proteins are me 99.35
PF03606465 DcuC: C4-dicarboxylate anaerobic carrier; InterPro 99.31
TIGR00786405 dctM TRAP transporter, DctM subunit. force-depende 99.24
COG2851433 CitM H+/citrate symporter [Energy production and c 99.19
TIGR00791440 gntP gluconate transporter. This family includes k 99.17
TIGR00529387 AF0261 converved hypothetical integral membrane pr 99.16
PRK12489 443 anaerobic C4-dicarboxylate transporter; Reviewed 99.15
PRK09412 433 anaerobic C4-dicarboxylate transporter; Reviewed 99.08
PF06450515 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterP 99.05
PF07158149 MatC_N: Dicarboxylate carrier protein MatC N-termi 99.02
PF03605364 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane tra 99.0
PRK11588506 hypothetical protein; Provisional 99.0
PF02447441 GntP_permease: GntP family permease; InterPro: IPR 98.99
PF04165385 DUF401: Protein of unknown function (DUF401) ; Int 98.99
PRK10654455 dcuC C4-dicarboxylate transporter DcuC; Provisiona 98.98
PF06808416 DctM: DctM-like transporters; InterPro: IPR010656 98.96
PRK09821454 putative transporter; Provisional 98.91
PRK15060425 L-dehydroascorbate transporter large permease subu 98.9
PRK14984438 high-affinity gluconate transporter; Provisional 98.9
COG3067516 NhaB Na+/H+ antiporter [Inorganic ion transport an 98.83
PRK10472445 low affinity gluconate transporter; Provisional 98.82
PRK10034447 fructuronate transporter; Provisional 98.81
TIGR00770 430 Dcu anaerobic c4-dicarboxylate membrane transporte 98.73
COG2610442 GntT H+/gluconate symporter and related permeases 98.7
PRK09804455 putative cryptic C4-dicarboxylate transporter DcuD 98.68
PRK09921445 permease DsdX; Provisional 98.65
COG1288481 Predicted membrane protein [Function unknown] 98.65
COG1593379 DctQ TRAP-type C4-dicarboxylate transport system, 98.62
COG1593379 DctQ TRAP-type C4-dicarboxylate transport system, 98.61
TIGR02123613 TRAP_fused TRAP transporter, 4TM/12TM fusion prote 98.6
TIGR00771388 DcuC c4-dicarboxylate anaerobic carrier family pro 98.6
PF07399438 DUF1504: Protein of unknown function (DUF1504); In 98.59
PRK15060425 L-dehydroascorbate transporter large permease subu 98.51
TIGR00931454 antiport_nhaC Na+/H+ antiporter NhaC. A single mem 98.5
COG2704436 DcuB Anaerobic C4-dicarboxylate transporter [Gener 98.48
PF07158149 MatC_N: Dicarboxylate carrier protein MatC N-termi 98.34
PRK11339508 abgT putative aminobenzoyl-glutamate transporter; 98.33
PF06808416 DctM: DctM-like transporters; InterPro: IPR010656 98.11
PF07854347 DUF1646: Protein of unknown function (DUF1646); In 98.08
TIGR00819513 ydaH p-Aminobenzoyl-glutamate transporter family. 98.02
COG2056444 Predicted permease [General function prediction on 97.96
TIGR02123613 TRAP_fused TRAP transporter, 4TM/12TM fusion prote 97.87
TIGR00931454 antiport_nhaC Na+/H+ antiporter NhaC. A single mem 97.82
PF02652522 Lactate_perm: L-lactate permease; InterPro: IPR003 97.8
COG1757485 NhaC Na+/H+ antiporter [Energy production and conv 97.78
PRK09804455 putative cryptic C4-dicarboxylate transporter DcuD 97.75
PF03553303 Na_H_antiporter: Na+/H+ antiporter family; InterPr 97.71
COG1906388 Uncharacterized conserved protein [Function unknow 97.7
COG3069451 DcuC C4-dicarboxylate transporter [Energy producti 97.48
PF03605 364 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane tra 97.39
TIGR00791 440 gntP gluconate transporter. This family includes k 97.18
COG1757485 NhaC Na+/H+ antiporter [Energy production and conv 97.18
PF03606465 DcuC: C4-dicarboxylate anaerobic carrier; InterPro 97.13
PF03806502 ABG_transport: AbgT putative transporter family; I 96.88
PRK11588506 hypothetical protein; Provisional 96.85
COG3069451 DcuC C4-dicarboxylate transporter [Energy producti 96.79
PRK09695560 glycolate transporter; Provisional 96.59
COG2056444 Predicted permease [General function prediction on 96.58
COG2851433 CitM H+/citrate symporter [Energy production and c 96.54
TIGR00795530 lctP L-lactate transport. The only characterized m 96.52
PRK10420551 L-lactate permease; Provisional 96.29
TIGR00529 387 AF0261 converved hypothetical integral membrane pr 96.26
PF04165385 DUF401: Protein of unknown function (DUF401) ; Int 95.96
PF02652522 Lactate_perm: L-lactate permease; InterPro: IPR003 95.94
PRK11339508 abgT putative aminobenzoyl-glutamate transporter; 95.82
PRK10472 445 low affinity gluconate transporter; Provisional 95.76
COG4664447 FcbT3 TRAP-type mannitol/chloroaromatic compound t 95.59
TIGR00819513 ydaH p-Aminobenzoyl-glutamate transporter family. 95.57
PRK10034 447 fructuronate transporter; Provisional 95.39
PF02447 441 GntP_permease: GntP family permease; InterPro: IPR 95.19
TIGR00795530 lctP L-lactate transport. The only characterized m 94.83
PF07854347 DUF1646: Protein of unknown function (DUF1646); In 94.56
PRK14984 438 high-affinity gluconate transporter; Provisional 94.55
COG1288481 Predicted membrane protein [Function unknown] 94.39
PRK10420551 L-lactate permease; Provisional 94.18
COG4756367 Predicted cation transporter [General function pre 94.16
PRK09821 454 putative transporter; Provisional 94.14
PRK09695560 glycolate transporter; Provisional 94.06
COG2704 436 DcuB Anaerobic C4-dicarboxylate transporter [Gener 93.87
COG4664447 FcbT3 TRAP-type mannitol/chloroaromatic compound t 93.6
PRK09921 445 permease DsdX; Provisional 93.54
COG1620522 LldP L-lactate permease [Energy production and con 93.32
TIGR00366438 conserved hypothetical integral membrane protein. 93.17
COG2610 442 GntT H+/gluconate symporter and related permeases 92.61
PF02667453 SCFA_trans: Short chain fatty acid transporter; In 91.88
TIGR00366438 conserved hypothetical integral membrane protein. 91.5
PF03553303 Na_H_antiporter: Na+/H+ antiporter family; InterPr 91.25
COG4756367 Predicted cation transporter [General function pre 91.23
COG4666642 TRAP-type uncharacterized transport system, fused 88.28
PF06166308 DUF979: Protein of unknown function (DUF979); Inte 87.41
PF03806502 ABG_transport: AbgT putative transporter family; I 85.52
PRK10519151 hypothetical protein; Provisional 83.92
PF02690142 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR 81.96
PF07399438 DUF1504: Protein of unknown function (DUF1504); In 80.02
>PLN00136 silicon transporter; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-63  Score=532.03  Aligned_cols=477  Identities=57%  Similarity=0.966  Sum_probs=361.0

Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCCChHHHHHhCChhHHHHHHHHHHHHHHHH
Q 010427            1 MALAPTENVVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLE   80 (511)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~   80 (511)
                      |++....|++....++..+|.+.++.+.+.++++++.++++++++++++|+++++|+++.+||+++++++|||+++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~i~~~~~Allga~llll~g~~~~~~a~~~i~~~tl~ll~gmmii~~~L~   80 (482)
T PLN00136          1 MALASLPKVVLGSLAFGVFWMLAVFPSVPFLPIGRTAGALLSAVLMIVFHVISPDDAYASIDLPILGLLFATMVVGSYLK   80 (482)
T ss_pred             CCCCcccchhhHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence            45666778888888888888888888899999999999999999999999999999999999999999999999999999


Q ss_pred             HhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCccc
Q 010427           81 RAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATP  160 (511)
Q Consensus        81 ~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~Tp  160 (511)
                      ++|+++++++++.+..++++++++.++++++++|+|++|++++++++|+++++|++.|++|.+++++++++||+||.+||
T Consensus        81 ~tG~~~~ia~~l~~~~~~~~~ll~~l~~~ta~lSafl~N~~t~llm~Piv~~la~~~~~~p~~~ll~la~aAn~Gg~~Tp  160 (482)
T PLN00136         81 NAGMFKHLGRLLAWRSQGGRDLLCRVCVVTALASALFTNDTCCVVLTEFVLELAAERNLPAKPFLLALASSANIGSSATP  160 (482)
T ss_pred             HcCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhhhh
Confidence            99999999999988777788888899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhccCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccc
Q 010427          161 IGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVND  240 (511)
Q Consensus       161 iG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  240 (511)
                      +|||+|+++++.++++|.||++.++|..++++++...+++++|||.++.+.+.+....+.+...+.+.+++...      
T Consensus       161 iG~p~Nlii~~~~~i~F~dF~~~~~P~~li~l~v~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------  234 (482)
T PLN00136        161 IGNPQNLVIAFNSKITFPKFLLGILPAMLAGMAVNMVMLLCMYWKDLDGGAELSVDGKQMEAVEEGRSPASAKS------  234 (482)
T ss_pred             ccccchheeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcccchhhhhhhcccccchhhh------
Confidence            99999999999889999999999999999999999888899999988643221000000000000000000000      


Q ss_pred             cccCCcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHHHHHHHHH
Q 010427          241 SKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYL  320 (511)
Q Consensus       241 ~~~~~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (511)
                           ..|..    +-++....+.+         .+...+...+     .+.+.++..+.   +...++++.+.+.+...
T Consensus       235 -----~~~~~----~~~~~~~~~~~---------~~~~~~~~~~-----~~~~~~~~~~~---~~~i~~~~ll~~~~~~~  288 (482)
T PLN00136        235 -----TKQQS----PALLQAGLNGD---------GNGDMSSMMS-----ENISTKHPWFM---QCTEHRRKLFLKSFAYV  288 (482)
T ss_pred             -----hhhhh----hhhhhcccccc---------ccchhHHHhh-----ccccccccccc---cchhccHHHHHHHHHHH
Confidence                 00000    00000000000         0000000000     00000000000   00012233333444333


Q ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHhccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhccc
Q 010427          321 VILGMLIALLMGLNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINR  400 (511)
Q Consensus       321 i~~~~l~~~~~~l~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~  400 (511)
                      +++.+++....|+|++++++.++.++++.+.++.+|+++++||++++||+|+|+++++++++|+.+++++.+....+.+.
T Consensus       289 v~~~~l~~f~~g~p~~~iAl~~a~~lll~~~~~~~~~l~~v~W~~Llff~GlFilv~~l~~tGl~~~i~~~l~~~~~~~~  368 (482)
T PLN00136        289 VTVGMVVAYMVGLNMSWTAITTAIALVVVDFRDAEPCLDTVSYSLLVFFSGMFITVSGFNKTGLPGAIWNFMAPYSKVNS  368 (482)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCh
Confidence            34444455568899999999999998888888999999999999999999999999999999999999998876644333


Q ss_pred             chhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCC
Q 010427          401 VGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKP  480 (511)
Q Consensus       401 ~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~  480 (511)
                      ......+.+++.++|+++||+|++++|.|++...........+...|+.+++++|.|||+||+||.+|+++.+.+||.+.
T Consensus       369 ~~~~~~~~~~s~~lS~~isNvp~~~~m~p~v~~~~~~~~~~~~~~~~~~la~ga~lGGn~TliGs~ANli~~~~~~~~~~  448 (482)
T PLN00136        369 VGGISVLSVIILLLSNLASNVPTVLLMGDEVAAAAALISPAAVTRSWLLLAWVSTVAGNLSLLGSAANLIVCEQARRAPR  448 (482)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcccCCcccchHHHHHHHHHhhccceeeccchhHHHHHHHHHHhhc
Confidence            33445566788999999999999999999665322211111123578889999999999999999999999999987433


Q ss_pred             CCceeecchhhhhhhHHHHHHHHHHHHHh
Q 010427          481 SGYTLSFWTHLKFGLPSTIVITAIGLALI  509 (511)
Q Consensus       481 ggy~i~f~df~k~G~plt~l~~iv~~~~i  509 (511)
                      +||+++|+||+|+|+|.++++++++.+++
T Consensus       449 ~G~~isf~~f~k~G~P~~l~~~~i~~~~~  477 (482)
T PLN00136        449 NAYDLTFWQHIVFGVPSTLIVTAIGIPLI  477 (482)
T ss_pred             cCCcccHHHHHHHhHHHHHHHHHHHHHHH
Confidence            69999999999999999999999998875

>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15445 arsenical pump membrane protein; Provisional Back     alignment and domain information
>cd01118 ArsB_permease Anion permease ArsB Back     alignment and domain information
>PLN00137 NHAD transporter family protein; Provisional Back     alignment and domain information
>cd01117 YbiR_permease Putative anion permease YbiR Back     alignment and domain information
>TIGR00935 2a45 arsenical pump membrane protein Back     alignment and domain information
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family Back     alignment and domain information
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes Back     alignment and domain information
>PRK09547 nhaB sodium/proton antiporter; Reviewed Back     alignment and domain information
>cd01116 P_permease Permease P (pink-eyed dilution) Back     alignment and domain information
>TIGR00785 dass anion transporter Back     alignment and domain information
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD Back     alignment and domain information
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13) Back     alignment and domain information
>TIGR00774 NhaB Na+/H+ antiporter NhaB Back     alignment and domain information
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families Back     alignment and domain information
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR00784 citMHS citrate transporter, CitMHS family Back     alignment and domain information
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>cd01116 P_permease Permease P (pink-eyed dilution) Back     alignment and domain information
>TIGR00786 dctM TRAP transporter, DctM subunit Back     alignment and domain information
>PRK15445 arsenical pump membrane protein; Provisional Back     alignment and domain information
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13) Back     alignment and domain information
>PLN00136 silicon transporter; Provisional Back     alignment and domain information
>TIGR00935 2a45 arsenical pump membrane protein Back     alignment and domain information
>TIGR00785 dass anion transporter Back     alignment and domain information
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>cd01118 ArsB_permease Anion permease ArsB Back     alignment and domain information
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein Back     alignment and domain information
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families Back     alignment and domain information
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09547 nhaB sodium/proton antiporter; Reviewed Back     alignment and domain information
>cd01117 YbiR_permease Putative anion permease YbiR Back     alignment and domain information
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD Back     alignment and domain information
>PLN00137 NHAD transporter family protein; Provisional Back     alignment and domain information
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family Back     alignment and domain information
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional Back     alignment and domain information
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein Back     alignment and domain information
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes Back     alignment and domain information
>TIGR00784 citMHS citrate transporter, CitMHS family Back     alignment and domain information
>TIGR00774 NhaB Na+/H+ antiporter NhaB Back     alignment and domain information
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ] Back     alignment and domain information
>TIGR00786 dctM TRAP transporter, DctM subunit Back     alignment and domain information
>COG2851 CitM H+/citrate symporter [Energy production and conversion] Back     alignment and domain information
>TIGR00791 gntP gluconate transporter Back     alignment and domain information
>TIGR00529 AF0261 converved hypothetical integral membrane protein Back     alignment and domain information
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange Back     alignment and domain information
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC Back     alignment and domain information
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family Back     alignment and domain information
>PRK11588 hypothetical protein; Provisional Back     alignment and domain information
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake Back     alignment and domain information
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions Back     alignment and domain information
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional Back     alignment and domain information
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease Back     alignment and domain information
>PRK09821 putative transporter; Provisional Back     alignment and domain information
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional Back     alignment and domain information
>PRK14984 high-affinity gluconate transporter; Provisional Back     alignment and domain information
>COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10472 low affinity gluconate transporter; Provisional Back     alignment and domain information
>PRK10034 fructuronate transporter; Provisional Back     alignment and domain information
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein Back     alignment and domain information
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism] Back     alignment and domain information
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional Back     alignment and domain information
>PRK09921 permease DsdX; Provisional Back     alignment and domain information
>COG1288 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein Back     alignment and domain information
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein Back     alignment and domain information
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length Back     alignment and domain information
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional Back     alignment and domain information
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC Back     alignment and domain information
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only] Back     alignment and domain information
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC Back     alignment and domain information
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional Back     alignment and domain information
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease Back     alignment and domain information
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT) Back     alignment and domain information
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family Back     alignment and domain information
>COG2056 Predicted permease [General function prediction only] Back     alignment and domain information
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein Back     alignment and domain information
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC Back     alignment and domain information
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport Back     alignment and domain information
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion] Back     alignment and domain information
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional Back     alignment and domain information
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised Back     alignment and domain information
>COG1906 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion] Back     alignment and domain information
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family Back     alignment and domain information
>TIGR00791 gntP gluconate transporter Back     alignment and domain information
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion] Back     alignment and domain information
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ] Back     alignment and domain information
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae Back     alignment and domain information
>PRK11588 hypothetical protein; Provisional Back     alignment and domain information
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion] Back     alignment and domain information
>PRK09695 glycolate transporter; Provisional Back     alignment and domain information
>COG2056 Predicted permease [General function prediction only] Back     alignment and domain information
>COG2851 CitM H+/citrate symporter [Energy production and conversion] Back     alignment and domain information
>TIGR00795 lctP L-lactate transport Back     alignment and domain information
>PRK10420 L-lactate permease; Provisional Back     alignment and domain information
>TIGR00529 AF0261 converved hypothetical integral membrane protein Back     alignment and domain information
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions Back     alignment and domain information
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport Back     alignment and domain information
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional Back     alignment and domain information
>PRK10472 low affinity gluconate transporter; Provisional Back     alignment and domain information
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family Back     alignment and domain information
>PRK10034 fructuronate transporter; Provisional Back     alignment and domain information
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake Back     alignment and domain information
>TIGR00795 lctP L-lactate transport Back     alignment and domain information
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT) Back     alignment and domain information
>PRK14984 high-affinity gluconate transporter; Provisional Back     alignment and domain information
>COG1288 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PRK10420 L-lactate permease; Provisional Back     alignment and domain information
>COG4756 Predicted cation transporter [General function prediction only] Back     alignment and domain information
>PRK09821 putative transporter; Provisional Back     alignment and domain information
>PRK09695 glycolate transporter; Provisional Back     alignment and domain information
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only] Back     alignment and domain information
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK09921 permease DsdX; Provisional Back     alignment and domain information
>COG1620 LldP L-lactate permease [Energy production and conversion] Back     alignment and domain information
>TIGR00366 conserved hypothetical integral membrane protein Back     alignment and domain information
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism] Back     alignment and domain information
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function Back     alignment and domain information
>TIGR00366 conserved hypothetical integral membrane protein Back     alignment and domain information
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised Back     alignment and domain information
>COG4756 Predicted cation transporter [General function prediction only] Back     alignment and domain information
>COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only] Back     alignment and domain information
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins Back     alignment and domain information
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae Back     alignment and domain information
>PRK10519 hypothetical protein; Provisional Back     alignment and domain information
>PF02690 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR003841 This family includes the mammalian type II renal Na+/Pi-cotransporters and other proteins from lower eukaryotes and bacteria some of which are also Na+/Pi-cotransporters Back     alignment and domain information
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 47.9 bits (113), Expect = 6e-06
 Identities = 40/286 (13%), Positives = 73/286 (25%), Gaps = 100/286 (34%)

Query: 3   LAPTENVVL----GS------------------FAFVIFWILAVFPAVPFLPIGR--TAG 38
           L P +NV++    GS                    F IFW+           +    +  
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL----------NLKNCNSPE 196

Query: 39  ALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLE---IVLS-- 93
            +L  ML  +   I P   + +       +      +   L R    K  E   +VL   
Sbjct: 197 TVL-EMLQKLLYQIDPN--WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 94  WRSRGAK--DLLCRICFIS---ALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLAL 148
             ++     +L C+I   +    ++  L    T  + L            ++P      L
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH------SMTLTPDEVKSLL 307

Query: 149 ASSANVGSSATPI----GNPQNLVIALQSGISFGKFL----------------------- 181
               +      P      NP    +++       + +                       
Sbjct: 308 LKYLDCRPQDLPREVLTTNP--RRLSI-----IAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 182 --LGILPSMLV-------GVF-VNTLI---LLCMYWRILSVKKDEE 214
             L +L             VF  +  I   LL + W  +       
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query511
4f35_D449 Transporter, NADC family; transport protein; HET: 100.0
4f35_D449 Transporter, NADC family; transport protein; HET: 99.87
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae} Back     alignment and structure
Probab=100.00  E-value=8.2e-50  Score=425.12  Aligned_cols=385  Identities=19%  Similarity=0.200  Sum_probs=292.5

Q ss_pred             CCCccchhHHHHHHHHHHHHHhcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhcc-CchhHHHHH
Q 010427           28 VPFLPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSR-GAKDLLCRI  106 (511)
Q Consensus        28 ~~~~~i~~~~~al~~~~~l~~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~-~~~~ll~~~  106 (511)
                      .+.+|..  ++++++.+++.++|+.+++|++++++++++++++|+|+++.+++|||+.+|+|.++.++.+ +++++++.+
T Consensus        48 te~iP~~--vtall~~~l~~l~gv~~~~~a~~~~~~~~i~li~g~~~la~al~~tGl~~riA~~il~~~g~~~~~l~~~~  125 (449)
T 4f35_D           48 TEALHVT--VTAILVPVMAVFFGIFETQAALNNFANSIIFLFLGGFALAAAMHHQGLDKVIADKVLAMAQGKMSVAVFML  125 (449)
T ss_dssp             TTSSCSH--HHHHHHHHHHHHTTSSCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCSCTHHHHHHH
T ss_pred             hccccHH--HHHHHHHHHHHHHCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            4556775  6699999999999999999999999999999999999999999999999999999887765 578888899


Q ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCch-----HHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHH
Q 010427          107 CFISALSSALFTNDTCCVILTEFVLKIARQNGVSPH-----PFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFL  181 (511)
Q Consensus       107 ~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~-----~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~  181 (511)
                      +..++++|+|+||+++++++.|++.+++++.+.+|.     ++++++++++|+||+.||+|+|+|++..+..+++|.||+
T Consensus       126 ~~~~~~lS~~isn~a~~~~~~Pi~~~i~~~~~~~~~~~~~~~lll~~~~aa~igg~~t~ig~~~N~i~~~~~~~~f~~~~  205 (449)
T 4f35_D          126 FGVTALLSMWISNTATAAMMLPLVLGVLSKVDADKQRSTYVFVLLGVAYSASIGGIATLVGSPPNAIAAAEVGLSFTDWM  205 (449)
T ss_dssp             HHHHHHHHHHSCSHHHHHHHHHHHHHHSCSCCCSSCCSSTTTTHHHHHHHHHHHHSSSSSSSHHHHHHHHHHTCCHHHHH
T ss_pred             HHHHHHHHHHhcchHHHHHhchHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhhcccCcCCCcccccccccccHHHhh
Confidence            999999999999999999999999999999988774     589999999999999999999999999888899999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccccccCCcccccccccCcccccC
Q 010427          182 LGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLS  261 (511)
Q Consensus       182 ~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~  261 (511)
                      ..++|..++.+++...++++++++..+   +.+     |.                  +++                   
T Consensus       206 ~~~~p~~li~l~~~~~~l~~~~~~~~~---~~~-----~~------------------~~~-------------------  240 (449)
T 4f35_D          206 KFGLPTAMMMLPMAIAILYFLLKPTLN---GMF-----EL------------------DRA-------------------  240 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred             hhcCchHHHHHHHHHHHHHHHhccccc---ccc-----hh------------------hcc-------------------
Confidence            999999888766643333222221110   000     00                  000                   


Q ss_pred             CCcccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHHHHHHH-HHHHHHHHHHHHh-CC--cHHH
Q 010427          262 GGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCT-YLVILGMLIALLM-GL--NMSW  337 (511)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~l~~~~~-~l--~~~~  337 (511)
                                                             +.+.++.+.+........ .+......+.... +.  ....
T Consensus       241 ---------------------------------------~~~~~~~~~~~~~~~~l~i~l~~~~~~l~~~~~~~~~~~~~  281 (449)
T 4f35_D          241 ---------------------------------------PVNWDKGKVVTLGIFGLTVFLWIFSSPINAALGGFKSFDTL  281 (449)
T ss_dssp             ----------------------------------------CCCCCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHH
T ss_pred             ---------------------------------------chhhhHHHHHHHHHHHHHHHHHHhhcccccccccccchhHH
Confidence                                                   000000001111001111 1111111111112 22  3345


Q ss_pred             HHHHHHHHHHHhccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhccc-chhHHHHHHHHHHHHH
Q 010427          338 TALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINR-VGGISILAIIILVLSN  416 (511)
Q Consensus       338 ~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~-~~~~~~l~~~~~ilS~  416 (511)
                      +++.++.++...++.+.+|+++++||+++++|+|++.+++++++||+.+++++.+.+..+..+ ......+..++.++|+
T Consensus       282 val~~~~ll~~~~~l~~~~~~~~i~W~~l~~~~g~~~l~~~l~~sG~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~ls~  361 (449)
T 4f35_D          282 VALGAILMLSFARVVHWKEIQKTADWGVLLLFGGGLCLSNVLKQTGTSVFLANALSDMVSHMGIFVVILVVATFVVFLTE  361 (449)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSHHHHHHHHHTTSEETE
T ss_pred             HHHHHHHHhhhhhccchhhhhcccCchHHHHhhhHHHHhHHHHhcCCHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHH
Confidence            667777777788999999999999999999999999999999999999999999876543211 1122233345566899


Q ss_pred             hhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhH
Q 010427          417 VASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLP  496 (511)
Q Consensus       417 ~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~p  496 (511)
                      |+||+|+++++.|++ ...++..|.+|. .+.+.+..+++++++||+||++|.++++.      |+|  +++||+|.|+|
T Consensus       362 f~sn~a~~~~l~Pi~-~~~a~~~g~~p~-~~~~~~~~~~s~~~~~p~~t~~n~i~~g~------g~~--~~~d~~k~G~~  431 (449)
T 4f35_D          362 FASNTASAALLIPVF-ATVAEAFGMSPV-LLSVLIAVAASCAFMLPVATPPNAIVFAS------GHI--KQSEMMRVGLY  431 (449)
T ss_dssp             ECCHHHHHHHHHHHH-HHHHHHTTCCSH-HHHHHHHHHHHCCCSSSSSSHHHHHHCSS------GGG--GTHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHH-HHHHHHcCCCHH-HHHHHHHHHHHHHhHhhhhhHHHHHHHhc------CCC--CHHHHHHHHHH
Confidence            999999999999954 567777788885 66777777888899999999999999983      555  59999999999


Q ss_pred             HHHHHHHHHHHH
Q 010427          497 STIVITAIGLAL  508 (511)
Q Consensus       497 lt~l~~iv~~~~  508 (511)
                      ++++.+++...+
T Consensus       432 ~~~~~~~v~~~~  443 (449)
T 4f35_D          432 LNIACIGLLTAI  443 (449)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988776554
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00