Citrus Sinensis ID: 010462
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 510 | 2.2.26 [Sep-21-2011] | |||||||
| Q7XBQ9 | 970 | Disease resistance protei | N/A | no | 0.874 | 0.459 | 0.273 | 5e-38 | |
| Q7XA42 | 979 | Putative disease resistan | N/A | no | 0.745 | 0.388 | 0.303 | 3e-33 | |
| Q7XA39 | 988 | Putative disease resistan | N/A | no | 0.762 | 0.393 | 0.309 | 8e-33 | |
| Q7XA40 | 992 | Putative disease resistan | N/A | no | 0.652 | 0.335 | 0.324 | 5e-31 | |
| Q9LRR5 | 1424 | Putative disease resistan | yes | no | 0.874 | 0.313 | 0.295 | 2e-30 | |
| Q9LRR4 | 1054 | Putative disease resistan | no | no | 0.852 | 0.412 | 0.282 | 2e-29 | |
| Q39214 | 926 | Disease resistance protei | no | no | 0.862 | 0.475 | 0.263 | 3e-14 | |
| Q38834 | 852 | Disease resistance RPP13- | no | no | 0.725 | 0.434 | 0.251 | 5e-14 | |
| Q9XIF0 | 906 | Putative disease resistan | no | no | 0.576 | 0.324 | 0.266 | 2e-10 | |
| Q8W3K3 | 910 | Putative disease resistan | no | no | 0.676 | 0.379 | 0.265 | 2e-09 |
| >sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 159 bits (402), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 165/603 (27%), Positives = 246/603 (40%), Gaps = 157/603 (26%)
Query: 1 MAQDYLSEKGPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCS 60
MA +L KG E+ D+G+E + L RSFFQ+ G +K MHD++HD A L S
Sbjct: 429 MAHGFLLSKGNMELEDVGDEVWKELYLRSFFQEIEVKDGKTYFK--MHDLIHDLATSLFS 486
Query: 61 NGCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGE 120
+ S I + H+M S+
Sbjct: 487 A--------NTSSSNIREINKHSYTHMM------------------------SIGFAEVV 514
Query: 121 YSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIE 180
+ ++ LP L +K LR L L + K+P++I L+HL+YL+L+G +
Sbjct: 515 FFYT---LPPL-EKFISLRVLNLG-------DSTFNKLPSSIGDLVHLRYLNLYGSG-MR 562
Query: 181 KLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240
LP+ LC+L NL+ L++ +C L LP+ KL L L +G+ SL +P IG L L
Sbjct: 563 SLPKQLCKLQNLQTLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCL 622
Query: 241 RSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGL 300
+++ +FVV G + LG L LNL +I L V + +A+ A L K +L L +
Sbjct: 623 KTLGQFVV--GRKKGYQLGELGNLNLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSM 680
Query: 301 HFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMS-- 358
+ + E E+ ++LEAL P NL L+I +RG + + +M+
Sbjct: 681 SWNNFGP---------HIYESEEVKVLEALKPHSNLTSLKIYGFRG----IHLPEWMNHS 727
Query: 359 -LTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIE-GMKSVKRVGNEFLGVESDTDGSSVI 416
L N+ + + +RNC LPP G LP LE LE+ G V+ V E + ++ + + I
Sbjct: 728 VLKNIVSILISNFRNCSCLPPFGDLPCLESLELHWGSADVEYV--EEVDIDVHSGFPTRI 785
Query: 417 AFPKLKHLTFWVMNALEEL-----DFETAIKREIII------------------------ 447
FP L+ L W +L+ L + + + E+II
Sbjct: 786 RFPSLRKLDIWDFGSLKGLLKKEGEEQFPVLEEMIIHECPFLTLSSNLRALTSLRICYNK 845
Query: 448 ------------MPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHI--------------- 480
+ L LTI C LK LP L L+ L I
Sbjct: 846 VATSFPEEMFKNLANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLE 905
Query: 481 ----------------------------------RRCPILEERCRKETGEDWPKIRHIPE 506
R CP L +RC K GEDW KI HIP
Sbjct: 906 GLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPN 965
Query: 507 ISI 509
++I
Sbjct: 966 VNI 968
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 141/464 (30%), Positives = 198/464 (42%), Gaps = 84/464 (18%)
Query: 1 MAQDYLSEKGPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCS 60
MA +L KG E+ D+G E +N L RSFFQ+ G +K MHD++HD A L S
Sbjct: 428 MAHGFLLSKGNLELEDVGNEVWNELYLRSFFQEIEVESGKTYFK--MHDLIHDLATSLFS 485
Query: 61 NGCLTV---EIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVE 117
+ EI++ + S G +++
Sbjct: 486 ANTSSSNIREINANYDGYMMSIGFAEVV-------------------------------- 513
Query: 118 SGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQK 177
YS P L K LR L L + + ++P++I L+HL+YL L G
Sbjct: 514 -SSYS------PSLLQKFVSLRVLNLR-------NSNLNQLPSSIGDLVHLRYLDLSGNF 559
Query: 178 KIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGEL 237
+I LP+ LC+L NL+ L++ +C +L LP+ KL L L +G SL P IG L
Sbjct: 560 RIRNLPKRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDGC-SLTSTPPRIGLL 618
Query: 238 IRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLK 297
L+S+ FV+G + LG LK LNL I L V +A+ A L K +L
Sbjct: 619 TCLKSLSCFVIGK--RKGHQLGELKNLNLYGSISITKLDRVKKDTDAKEANLSAKANLHS 676
Query: 298 LGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFM 357
L L + DG D +LEAL P NLK L I+ + G R +P W
Sbjct: 677 LCLSW--DLDGKHRY----------DSEVLEALKPHSNLKYLEINGFGGIR--LP-DWMN 721
Query: 358 S--LTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSV 415
L N+ + + G NC LPP G+LP LE LE+ + VE D
Sbjct: 722 QSVLKNVVSIRIRGCENCSCLPPFGELPCLESLELHTGSA---------DVEYVEDNVHP 772
Query: 416 IAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSC 459
FP L+ L W + L+ L K+ P L +T + C
Sbjct: 773 GRFPSLRKLVIWDFSNLKGLLKMEGEKQ----FPVLEEMTFYWC 812
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (357), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 143/462 (30%), Positives = 209/462 (45%), Gaps = 73/462 (15%)
Query: 1 MAQDYLSEKGPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCS 60
MA +L KG E+ D+G E +N L RSFFQ+ G +K +HD++HD A L S
Sbjct: 430 MAHGFLLSKGNLELEDVGNEVWNELYLRSFFQEIEAKSGNTYFK--IHDLIHDLATSLFS 487
Query: 61 NGCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGE 120
+S G + + NVK + S+ +
Sbjct: 488 AS--------------ASCGNIREI------------------NVKDYKHTVSIGFAAVV 515
Query: 121 YSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIE 180
S+S P L K LR L L + ++++P++I LLHL+YL L
Sbjct: 516 SSYS----PSLLKKFVSLRVLNLSYSK-------LEQLPSSIGDLLHLRYLDL-SCNNFR 563
Query: 181 KLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240
LPE LC+L NL+ L+V +C +L LP+ KL L +L +G L P IG L L
Sbjct: 564 SLPERLCKLQNLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGC-PLTSTPPRIGLLTCL 622
Query: 241 RSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGL 300
+++ F+VG + LG LK LNL I L V + +A A L K +L L +
Sbjct: 623 KTLGFFIVGS--KKGYQLGELKNLNLCGSISITHLERVKNDTDA-EANLSAKANLQSLSM 679
Query: 301 HFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWF--MS 358
+ D + R E++E ++LEAL P PNLK L I + G R P SW
Sbjct: 680 SW------DNDGPNRYESKE---VKVLEALKPHPNLKYLEIIAFGGFR--FP-SWINHSV 727
Query: 359 LTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIE-GMKSVKRVGNEFLGVESDTDGSSVIA 417
L + + + +NC LPP G+LP LE LE++ G V+ V + + + S+ +
Sbjct: 728 LEKVISVRIKSCKNCLCLPPFGELPCLENLELQNGSAEVEYVEED----DVHSRFSTRRS 783
Query: 418 FPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSC 459
FP LK L W +L+ L E ++ P L + I C
Sbjct: 784 FPSLKKLRIWFFRSLKGLMKEEGEEK----FPMLEEMAILYC 821
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 129/398 (32%), Positives = 188/398 (47%), Gaps = 65/398 (16%)
Query: 1 MAQDYLSEKGPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCS 60
MA +L KG E+ D+G E +N L RSFFQ+ G +K MHD++HD A + S
Sbjct: 428 MAHSFLLSKGNMELEDVGNEVWNELYLRSFFQEIEVKSGKTYFK--MHDLIHDLATSMFS 485
Query: 61 NGCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGE 120
+ I I+ + ++ + V + + S+
Sbjct: 486 ASASSRSIRQ-----INVKDDEDMMFI-----------------VTNYKDMMSIGFSEVV 523
Query: 121 YSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIE 180
S+S P LF + LR L L E +++P+++ L+HL+YL L G K I
Sbjct: 524 SSYS----PSLFKRFVSLRVLNLSNSE-------FEQLPSSVGDLVHLRYLDLSGNK-IC 571
Query: 181 KLPETLCELYNLERLNVDHCKNLRELPRGIGK---LRKLMYLHNEGTDSLRYLPAGIGEL 237
LP+ LC+L NL+ L++ +C++L LP+ K LR L+ H L +P IG L
Sbjct: 572 SLPKRLCKLQNLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHC----PLTSMPPRIGLL 627
Query: 238 IRLRSVRKFVVG--GGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSL 295
L+++ FVVG GY LG L+ LNL I L V + EA+ A L K +L
Sbjct: 628 TCLKTLGYFVVGERKGY----QLGELRNLNLRGAISITHLERVKNDMEAKEANLSAKANL 683
Query: 296 LKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISW 355
HS +R R E+EE ++LEAL P PNLK L I ++ G +P W
Sbjct: 684 --------HSLSMSWDRPNRYESEE---VKVLEALKPHPNLKYLEIIDFCGF--CLP-DW 729
Query: 356 F--MSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIE 391
L N+ + + G NC LPP G+LP LE LE++
Sbjct: 730 MNHSVLKNVVSILISGCENCSCLPPFGELPCLESLELQ 767
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 147/497 (29%), Positives = 233/497 (46%), Gaps = 51/497 (10%)
Query: 1 MAQDYLSE-KGPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLC 59
MA D L + + + + DIG +Y L ++SFFQ + MHD+++D A+ +
Sbjct: 444 MAIDLLYQPRSSRRLEDIGNDYLGDLVAQSFFQRLDITMTSFV----MHDLMNDLAKAVS 499
Query: 60 SNGCLTVEIHSGEQ--STISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVE 117
+ C +E + + ST F ++ ASV + ++ G LR++L
Sbjct: 500 GDFCFRLEDDNIPEIPSTTRHFSFSRS-------QCDASV---AFRSICGAEFLRTILPF 549
Query: 118 SGEYSW-----SNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLS 172
+ S + ++L L + L+ LR L L + I +P +++ L L+YL
Sbjct: 550 NSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQ-------ITNLPKSLKGLKLLRYLD 602
Query: 173 LFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPA 232
L KI++LPE +C L NL+ L + +C++L LP+ I +L L L GT L +P
Sbjct: 603 L-SSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGT-PLVEMPP 660
Query: 233 GIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDC-RIRGLGDVSDAGEARRAELEK 291
GI +L L+ + FV+ G L LK+L+ LR RI L +V+ A EA+ A L++
Sbjct: 661 GIKKLRSLQKLSNFVI--GRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLKR 718
Query: 292 KKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVV 351
K L GL + G G + + +L L P P+LK I+ Y+G
Sbjct: 719 KPFL--DGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQG--GAF 774
Query: 352 PISWF--MSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESD 409
P W S + + L C LPP+G+LPSL+YL IE +++VG +F E++
Sbjct: 775 P-KWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENN 833
Query: 410 TDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKL-KALPDH 468
+ G + F L+ L F+ M +E + E I P L L I C L K P+
Sbjct: 834 SRG---VPFQSLQILKFYGMPRWDEW---ICPELEDGIFPCLQKLIIQRCPSLRKKFPEG 887
Query: 469 LLQKTTLQKLHIRRCPI 485
L T ++ I CP+
Sbjct: 888 LPSST---EVTISDCPL 901
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 229/500 (45%), Gaps = 65/500 (13%)
Query: 1 MAQDYLSE-KGPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLC 59
MA+ +L + + K + ++G EYF+ L SRS Q Y MHD +++ AQ+
Sbjct: 452 MAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKTKTRY-------IMHDFINELAQF-- 502
Query: 60 SNGCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESG 119
++G + + G + +S T+ L L + P+ ++ ++ ++ LR+ L S
Sbjct: 503 ASGEFSSKFEDGCKLQVSE--RTRYLSY---LRDNYAEPME-FEALREVKFLRTFLPLSL 556
Query: 120 EYSWSNEILPQ-----LFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLF 174
S + L Q L LT LR L L + + P + + H ++L L
Sbjct: 557 TNSSRSCCLDQMVSEKLLPTLTRLRVLSLS------HYKIARLPPDFFKNISHARFLDL- 609
Query: 175 GQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGI 234
+ ++EKLP++LC +YNL+ L + +C +L+ELP I L L YL GT LR +P
Sbjct: 610 SRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGT-KLRQMPRRF 668
Query: 235 GELIRLRSVRKFVVGGGY-DRACSLGSLKKLN-LLRDCRIRGLGDVSDAGEARRAELEKK 292
G L L+++ F V R LG L L+ L+ ++ + DV+DA E A L K
Sbjct: 669 GRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAE---ANLNSK 725
Query: 293 KSLLKLGLHF--GHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNV 350
K L ++ + G S + R +NE + + E L P +++KL I+ Y+GRR
Sbjct: 726 KHLREIDFVWRTGSSSSENNTNPHRTQNEAE----VFEKLRPHRHIEKLAIERYKGRR-- 779
Query: 351 VPISWFM--SLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVES 408
P W S + + + L + C LP LG+LP L+ L I GM ++ +G +F +
Sbjct: 780 FP-DWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYFSDQ 838
Query: 409 DTDGSSVIAFPKLKHLTF--------WVMNALEELDFETAIKREIII------------M 448
F L+ L F W+ + D ++K+ I+ +
Sbjct: 839 QLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRGDLFPSLKKLFILRCPELTGTLPTFL 898
Query: 449 PRLSSLTIWSCRKLKALPDH 468
P L SL I+ C L PDH
Sbjct: 899 PSLISLHIYKCGLLDFQPDH 918
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 137/520 (26%), Positives = 212/520 (40%), Gaps = 80/520 (15%)
Query: 1 MAQDYLSEKGPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCS 60
MAQ ++ + ++ + Y N L R+ Q G KMHD++ + A +
Sbjct: 457 MAQRFVEPIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSK 516
Query: 61 --NGCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVES 118
C S + HL + + P D+++ L SLLV S
Sbjct: 517 LERFCDVYNDDSDGDDAAETMENYGSRHLCI---QKEMTP----DSIRA-TNLHSLLVCS 568
Query: 119 GEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKK 178
E+LP L LRAL LE + I K+P + + +LKYL+L + +
Sbjct: 569 SAKH-KMELLPSL----NLLRALDLE-------DSSISKLPDCLVTMFNLKYLNL-SKTQ 615
Query: 179 IEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYL----HNEGTDSLRYLPAGI 234
+++LP+ +L NLE LN H K + ELP G+ KL+KL YL NEG DS G
Sbjct: 616 VKELPKNFHKLVNLETLNTKHSK-IEELPLGMWKLKKLRYLITFRRNEGHDSNWNYVLGT 674
Query: 235 GELIRLRSVRKFVVGGGYDR----ACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELE 290
+ ++ ++ V ++ +LG + +L + +R + G L
Sbjct: 675 RVVPKIWQLKDLQVMDCFNAEDELIKNLGCMTQLTRISLVMVR-----REHGRDLCDSLN 729
Query: 291 KKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERL-LEALGPPPNLKKLRIDEYRGRRN 349
K K + L L DE+E L ++ L +++KL + G+
Sbjct: 730 KIKRIRFLSL-----------------TSIDEEEPLEIDDLIATASIEKLFL---AGKLE 769
Query: 350 VVPISWFMSLTNLRFLFLFGWRNCEH-LPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVES 408
VP SWF +L NL +L L G + E+ + + LP L +L N ++G
Sbjct: 770 RVP-SWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFY---------NAYMGPRL 819
Query: 409 DTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDH 468
F LK L M L E+ E M L L + +CR L+ +P
Sbjct: 820 RFAQ----GFQNLKILEIVQMKHLTEVVIEDG------AMFELQKLYVRACRGLEYVPRG 869
Query: 469 LLQKTTLQKLH-IRRCPILEERCRKETGEDWPKIRHIPEI 507
+ LQ+LH I L ER R E D +++HIP I
Sbjct: 870 IENLINLQELHLIHVSNQLVERIRGEGSVDRSRVKHIPAI 909
|
Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 114/453 (25%), Positives = 187/453 (41%), Gaps = 83/453 (18%)
Query: 18 GEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCSNGCLTVEIHSGEQSTIS 77
GE+ F+ L +R + K Y G I CK+HD+V D I ++ + S
Sbjct: 458 GEDCFSGLTNRCLIEVVDKTYSGTIITCKIHDMVRDLV------------IDIAKKDSFS 505
Query: 78 SFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTC 137
+ HL ++ G I N K LRG+ S ++GE + N L + F
Sbjct: 506 NPEGLNCRHLGIS---GNFDEKQIKVNHK-LRGVVST-TKTGEVNKLNSDLAKKFTDCKY 560
Query: 138 LRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNV 197
LR L + + ++ + +I I L HL LSL + + P ++ +L+NL+ L+
Sbjct: 561 LRVLDIS---KSIFDAPLSEILDEIASLQHLACLSLSNTHPLIQFPRSMEDLHNLQILDA 617
Query: 198 DHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACS 257
+C+NL++L I +KL+ L SL P GIG L++L + F + C
Sbjct: 618 SYCQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARS-NNGCK 676
Query: 258 LGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRE 317
L +K L +R LG G+ + E E+ SL+ L S + +
Sbjct: 677 LSEVKNLT-----NLRKLGLSLTRGD--QIEEEELDSLINLSKLMSISINCYDSYG---- 725
Query: 318 NEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLP 377
D+ ++AL PP L +L + Y G+ + SW L
Sbjct: 726 ---DDLITKIDALTPPHQLHELSLQFYPGKSSP---SW--------------------LS 759
Query: 378 PLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFW-----VMNAL 432
P KLP L Y+ I VK + F G E+ T W ++++L
Sbjct: 760 P-HKLPMLRYMSICSGNLVK-MQEPFWGNEN----------------THWRIEGLMLSSL 801
Query: 433 EELDFETAIKREIIIMPRLSSLTIWSCRKLKAL 465
+LD + + ++ MP L ++T C +L++
Sbjct: 802 SDLDMDWEVLQQ--SMPYLRTVTANWCPELESF 832
|
Disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 154/353 (43%), Gaps = 59/353 (16%)
Query: 157 KIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVD-HCKNLRELPRGIGKLRK 215
K+P++I KL+HLKYLSL+ Q + LP +L L +L LN+ + L +P ++ +
Sbjct: 589 KLPSSIGKLIHLKYLSLY-QASVTYLPSSLRNLKSLLYLNLRINSGQLINVPNVFKEMLE 647
Query: 216 LMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGL 275
L YL S +G L++L ++ F + S+ L ++ LR +I
Sbjct: 648 LRYLSLPWERS-SLTKLELGNLLKLETLINFST-----KDSSVTDLHRMTKLRTLQIL-- 699
Query: 276 GDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPN 335
+S G +E S L + GH D + P N
Sbjct: 700 --ISGEG----LHMETLSSALSM---LGHLEDL--------------------TVTPSEN 730
Query: 336 LKKLRIDEYRGRRNVVPISWFMS-LTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMK 394
+ + + R + + F S LT + ++ F E P +P+LE ++ +K
Sbjct: 731 SVQFKHPKLIYRPMLPDVQHFPSHLTTISLVYCF----LEEDP----MPTLE--KLLQLK 780
Query: 395 SVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSL 454
V N ++G G FP L L W ++ALEE E MP L +L
Sbjct: 781 VVSLWYNAYVGRRMVCTGG---GFPPLHRLEIWGLDALEEWIVEEGS------MPLLHTL 831
Query: 455 TIWSCRKLKALPDHLLQKTTLQKLHIRRCPILEERCRKETGEDWPKIRHIPEI 507
I C+KLK +PD L ++L++L IR + ++ + GED+ K++H+P I
Sbjct: 832 HIVDCKKLKEIPDGLRFISSLKELAIRTNEKVFQKKVSKGGEDYYKMQHVPLI 884
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 106/400 (26%), Positives = 177/400 (44%), Gaps = 55/400 (13%)
Query: 111 LRSLLV--ESGEYSWSNEILPQLFDKLTCLRALKL-EVREQGLYTNFIKKIPTNIEKLLH 167
L+SLL+ E+ SW ++L F +L LR L L + + +G + +P+ I KL+H
Sbjct: 556 LQSLLIVWENRRKSW--KLLGSSFIRLELLRVLDLYKAKFEG------RNLPSGIGKLIH 607
Query: 168 LKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSL 227
L+YL+L ++ +LP +L L L L+++ C +P + + +L YL S
Sbjct: 608 LRYLNL-DLARVSRLPSSLGNLRLLIYLDINVCTKSLFVPNCLMGMHELRYLRLPFNTS- 665
Query: 228 RYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRA 287
+ + G+ L+ L ++ F SL L+ + LR I +S E A
Sbjct: 666 KEIKLGLCNLVNLETLENFSTENS-----SLEDLRGMVSLRTLTIGLFKHISK--ETLFA 718
Query: 288 ELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGR 347
+ + L L + R D +R E D +L+A+ +LK+L + Y +
Sbjct: 719 SILGMRHLENLSI-----RTPDGSSKFKRIME---DGIVLDAI----HLKQLNLRLYMPK 766
Query: 348 RNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVE 407
+P ++L + L G E P+ +E + +K V +F
Sbjct: 767 ---LPDEQHFP-SHLTSISLDGCCLVEDPLPI----------LEKLLELKEVRLDFRAFC 812
Query: 408 SDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPD 467
SS FP+L L W + EE E MPRL +LTIW+C+KLK LPD
Sbjct: 813 GKRMVSSDGGFPQLHRLYIWGLAEWEEWIVEEGS------MPRLHTLTIWNCQKLKQLPD 866
Query: 468 HLLQKTTLQKLHIRRCPILEERCRKETGEDWPKIRHIPEI 507
L +++ L + + + E GE++ K++HIP +
Sbjct: 867 GLRFIYSIKDLDMDKK---WKEILSEGGEEYYKVQHIPSV 903
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 510 | ||||||
| 255549784 | 786 | leucine-rich repeat containing protein, | 0.945 | 0.613 | 0.422 | 3e-91 | |
| 224115620 | 963 | cc-nbs-lrr resistance protein [Populus t | 0.925 | 0.490 | 0.428 | 3e-90 | |
| 224115608 | 922 | cc-nbs-lrr resistance protein [Populus t | 0.941 | 0.520 | 0.420 | 1e-88 | |
| 359482788 | 903 | PREDICTED: putative disease resistance p | 0.915 | 0.517 | 0.424 | 9e-88 | |
| 147825450 | 927 | hypothetical protein VITISV_000086 [Viti | 0.919 | 0.505 | 0.424 | 2e-87 | |
| 359482792 | 922 | PREDICTED: putative disease resistance p | 0.907 | 0.502 | 0.427 | 3e-87 | |
| 359482769 | 904 | PREDICTED: putative disease resistance p | 0.911 | 0.514 | 0.415 | 3e-87 | |
| 359482784 | 919 | PREDICTED: putative disease resistance p | 0.909 | 0.504 | 0.421 | 8e-87 | |
| 359482790 | 923 | PREDICTED: putative disease resistance p | 0.911 | 0.503 | 0.415 | 2e-86 | |
| 224114824 | 941 | cc-nbs-lrr resistance protein [Populus t | 0.925 | 0.501 | 0.407 | 2e-82 |
| >gi|255549784|ref|XP_002515943.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223544848|gb|EEF46363.1| leucine-rich repeat containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 219/518 (42%), Positives = 303/518 (58%), Gaps = 36/518 (6%)
Query: 1 MAQDYLSEKGPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCS 60
MAQ YL + +M IGE+Y + LA SFF+ +K G + CKM++IVHDFAQY+
Sbjct: 255 MAQGYLRQTHVDDMERIGEKYLHNLAGHSFFEVVHKIDCGHVMSCKMYNIVHDFAQYIVK 314
Query: 61 NGCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGE 120
N C ++E++ E+ + S ++ HL + L + S P I+ L+ LR+L V+
Sbjct: 315 NECFSIEVNDEEELKMMSL-HKEVRHLRVMLGKDVSFPSSIYR----LKDLRTLWVQCKG 369
Query: 121 YSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIE 180
S L LF +LTCLR+L L + +IP++I KL+HL+ + L K ++
Sbjct: 370 NSKVGAALSNLFGRLTCLRSLNLS-------NCNLAEIPSSICKLIHLRQIDLSYNKDLK 422
Query: 181 KLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240
LPE LCEL NL+ LN+D C +L +LPRG+ KL L +LHN G + + LP GI +L L
Sbjct: 423 GLPEALCELCNLQTLNMDGCFSLVKLPRGLEKLINLRHLHNGGFEGV--LPKGISKLTCL 480
Query: 241 RSVRKFVVGGGYDRACSLGSLKKLNLLRDCR-IRGLGDVSDAGEARRAELEKKKSLLKLG 299
RS+ +F +G AC+LG LK LN L+ C I GL V+D GEA++AEL KK + +L
Sbjct: 481 RSLNRFSIGQNNQEACNLGDLKNLNHLQGCLCIMGLEIVADVGEAKQAELRKKTEVTRLE 540
Query: 300 LHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSL 359
L FG G E + D+ +L AL P P +++L I +Y+GR V P SW + L
Sbjct: 541 LRFG---------KGDAEWRKHHDDEILLALEPSPYVEELGIYDYQGR-TVFP-SWMIFL 589
Query: 360 TNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFP 419
+NL+ + L + CEHLPPLGKLP LE L I GM V++ G EFLG+ES + SS IAFP
Sbjct: 590 SNLKTVILTNCKTCEHLPPLGKLPFLENLRIWGMDGVQKAGLEFLGLESSSSSSSGIAFP 649
Query: 420 KLKHLTF--------WVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQ 471
KL +L F W + + D E + K I IMP+L SL+ C KLKA+PD L+
Sbjct: 650 KLINLRFMRMRNWEVWADDFIRMGDEEDSTK--ITIMPQLRSLSFAWCSKLKAVPDQFLR 707
Query: 472 KTTLQKLHIRRCPILEERCRKETGEDWPKIRHIPEISI 509
K TLQ+L + P L+ +K G+DW KI HIP I I
Sbjct: 708 KATLQELTLTCSPELKRAYQKGIGQDWHKISHIPNIKI 745
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115620|ref|XP_002332101.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222874921|gb|EEF12052.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 223/520 (42%), Positives = 290/520 (55%), Gaps = 48/520 (9%)
Query: 1 MAQDYLSEKGPKEMGDIGEEYFNILASRSFFQDFYKGYG-GEIYKCKMHDIVHDFAQYLC 59
MAQ +L E KEM IG + F LA+RSFFQDF K G G IY CKMHD+VHD AQ L
Sbjct: 453 MAQGFLRETHNKEMEVIGRQCFEALAARSFFQDFQKETGDGSIYACKMHDMVHDLAQNLT 512
Query: 60 SNGCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESG 119
N C +V+I + I SF H M+ S P I L+ LRSL+V+ G
Sbjct: 513 KNECSSVDIDGPTELKIDSFS-INARHSMVVFRNYNSFPATI----HSLKKLRSLIVD-G 566
Query: 120 EYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKI 179
+ S N LP L L+CLR LKL I+++P+NI KL+HL+++ + I
Sbjct: 567 DPSSMNAALPNLIANLSCLRTLKLS-------GCGIEEVPSNIGKLIHLRHVDFSWNENI 619
Query: 180 EKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPA-GIGELI 238
++LPE + ELYN+ L+V C L LP IG+L KL +L L ++ G+ L
Sbjct: 620 KELPEEMFELYNMLTLDVSFCNKLERLPDNIGRLAKLRHLSIHDWRDLSFVKMRGVKGLT 679
Query: 239 RLRSVRKFVVGGGYDRACSLGSLKKLNLLR-DCRIRGLGDVSDAGEARRAELEKKKSLLK 297
LR + F V G D+ ++G L+ LN L+ I LGDV D E ++AEL KK L
Sbjct: 680 SLRELDDFHVSGS-DKESNIGDLRNLNHLQGSLMISWLGDVKDPDEVKKAELNSKKHLAH 738
Query: 298 LGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFM 357
LGL+F R + E+ D+ +LEAL PPPN+ RI Y+G V+ + F
Sbjct: 739 LGLNF----------QSRTDREKIHDDEVLEALEPPPNIYSSRIGYYQG---VILLRVFP 785
Query: 358 SLTN-LRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTD----- 411
N LR + L WR E+LPPLGKLPSLE L + GM+ V RVG EFLG+ D+D
Sbjct: 786 GWINKLRAVELRDWRKIENLPPLGKLPSLEALHVIGMECVGRVGREFLGLGDDSDISIGE 845
Query: 412 -----GSSVIAFPKLKHLTFWVMNALEEL-------DFETAIKREIIIMPRLSSLTIWSC 459
+++IAFPKLK L+FW M EE + +T I IIMP L SL IW C
Sbjct: 846 MTSSSSNTIIAFPKLKSLSFWDMEEWEEWEGGEGGNEDKTNISISTIIMPSLRSLEIWDC 905
Query: 460 RKLKALPDHLLQKTTLQKLHIRRCPILEERCRKETGEDWP 499
KLKALPD++LQ TTL++L IR PIL E+ KE G+ WP
Sbjct: 906 PKLKALPDYVLQSTTLEQLKIRGSPILGEQYLKEGGKGWP 945
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115608|ref|XP_002332098.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222874918|gb|EEF12049.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 222/528 (42%), Positives = 295/528 (55%), Gaps = 48/528 (9%)
Query: 1 MAQDYLSEKGPKEMGDIGEEYFNILASRSFFQDFYKGYG-GEIYKCKMHDIVHDFAQYLC 59
MAQ +L EK +EM G E F LA+RSFFQDF K G IY CKMHD+VHDFAQ L
Sbjct: 423 MAQGFLREKQNEEMEVKGRECFEALAARSFFQDFEKDKNDGSIYACKMHDMVHDFAQSLT 482
Query: 60 SNGCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESG 119
N C +VEI +S I SF H M+ L + P+P + + LRSL+V+ G
Sbjct: 483 KNECFSVEIDGSTESKIYSFSRDA-RHFMVVLRNYETDPLPA--TIHSFKKLRSLIVD-G 538
Query: 120 EYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKI 179
S N LP L L+CLR LK ++++P+NI KL+HL+++ L I
Sbjct: 539 YPSLMNAALPNLIANLSCLRTLKFP-------RCGVEEVPSNIGKLIHLRHVDL-SFNLI 590
Query: 180 EKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHN--EGTDSLRYLPAGIGEL 237
+LPE +CELYN+ LNV C+ L LP +G+L KL +L DS +G+ L
Sbjct: 591 RELPEEMCELYNMLTLNVSFCEKLERLPDNMGRLVKLRHLRVGIYWDDSSFVKMSGVEGL 650
Query: 238 IRLRSVRKFVVGGGYDRACSLGSLKKLNLLR-DCRIRGLGDVSDAGEARRAELEKKKSLL 296
LR + +F V G + ++G LK LN L+ I+ LGDV D E ++AE++ KK L
Sbjct: 651 SSLRELDEFHVSGT-GKVSNIGDLKDLNHLQGSLTIKWLGDVKDPNEVKKAEMKSKKHLT 709
Query: 297 KLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWF 356
+L L F R + E+ D+ +LEAL PPPNL+ L + Y+G ++P+ F
Sbjct: 710 RLDLFF----------QSRTDREKINDDEVLEALEPPPNLESLDLSNYQG---IIPV--F 754
Query: 357 MSLTN-LRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDG--- 412
S N LR + L+ W E+LPPLGKLPSLE L + M+ V RVG EFLG+ D+ G
Sbjct: 755 PSCINKLRVVRLWDWGKIENLPPLGKLPSLEELTVGDMECVGRVGREFLGLRVDSKGEMT 814
Query: 413 ----SSVIAFPKLKHLTFWVMNALEELDF-------ETAIKREIIIMPRLSSLTIWSCRK 461
+++IAFPKLK L+F M EE + +T I IIMP L SL IW C K
Sbjct: 815 SSSSNTIIAFPKLKSLSFRWMTNWEEWEGGEGGNEDKTNISISTIIMPSLHSLRIWECPK 874
Query: 462 LKALPDHLLQKTTLQKLHIRRCPILEERCRKETGEDWPKIRHIPEISI 509
LKALPD++LQ TT ++L IR PI+ + K GE WP H P I I
Sbjct: 875 LKALPDYVLQSTTFEQLEIRWSPIIGAQF-KAGGEGWPNASHTPNIKI 921
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482788|ref|XP_003632840.1| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 330 bits (847), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 217/511 (42%), Positives = 289/511 (56%), Gaps = 44/511 (8%)
Query: 1 MAQDYLSEKGPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCS 60
MAQ YL G KEM IG YF LA+RSFFQDF K G I +CKMHDIVHDFAQ+L
Sbjct: 428 MAQSYLKSDGSKEMEMIGRTYFEYLAARSFFQDFEKDTDGNIIRCKMHDIVHDFAQFLTQ 487
Query: 61 NGCLTVEIHSGEQSTIS-SFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESG 119
N C VE+ + + +I SF KI H+ L + P + + ++ L +LL +
Sbjct: 488 NECFIVEVDNQQMESIDLSF--KKIRHITLVVREST----PNFVSTYNMKNLHTLLAKEA 541
Query: 120 EYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKI 179
S LP L LTCLRAL L + I+++P + KL+HL++L+L G +
Sbjct: 542 FKSSVLVALPNLLRHLTCLRALDLSSNQ------LIEELPKEVGKLIHLRFLNLSGCFWL 595
Query: 180 EKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIR 239
+LPET+C+LYNL+ LN+ C +LR+LP+ +GKL L +L N ++ + LP GIG L
Sbjct: 596 RELPETICDLYNLQTLNIQGCSSLRKLPQAMGKLINLRHLENSFLNN-KGLPKGIGRLSS 654
Query: 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLR-DCRIRGLGDVSDAGEARRAELEKKKSLLKL 298
L+++ F+V + +G L+ LN LR D I+GL +V DAGEA +AEL+ K L L
Sbjct: 655 LQTLNVFIVSSHGNDEGQIGDLRNLNNLRGDLSIQGLDEVKDAGEAEKAELKNKVHLQDL 714
Query: 299 GLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFM- 357
L F + E+ + + EAL P PNLK L I Y R P +W M
Sbjct: 715 TLGF---------------DREEGTKGVAEALQPHPNLKALHIYYYGDRE--WP-NWMMG 756
Query: 358 -SLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVI 416
SL L+ L L C LPPLG+LP LE L I M VK +G+EFL GSS
Sbjct: 757 SSLAQLKILNLKFCERCPCLPPLGQLPVLEELGIWKMYGVKYIGSEFL-------GSSST 809
Query: 417 AFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQ 476
FPKLK L ++ L++ +E K E IMP L+ L + C KL+ LP H+LQ+TTLQ
Sbjct: 810 VFPKLKELAISGLDKLKQ--WEIKEKEERSIMPCLNHLIMRGCPKLEGLPGHVLQRTTLQ 867
Query: 477 KLHIRRCPILEERCRKETGEDWPKIRHIPEI 507
L+IR PILE R RK+ GED KI HIP++
Sbjct: 868 ILNIRSSPILERRYRKDIGEDRHKISHIPQV 898
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147825450|emb|CAN71072.1| hypothetical protein VITISV_000086 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 217/511 (42%), Positives = 290/511 (56%), Gaps = 42/511 (8%)
Query: 1 MAQDYLSEKGPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCS 60
MAQ YL+ KEM +G YF LA+RSFFQDF K G I CKMHDIVHDFAQ+L
Sbjct: 450 MAQSYLNSDRSKEMEMVGRTYFEYLAARSFFQDFEKDDDGNIICCKMHDIVHDFAQFLTQ 509
Query: 61 NGCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLV-ESG 119
N C VE+ + ++ ++ F + KI H L + P + + ++ L +LL E
Sbjct: 510 NECFIVEVDNQKKGSMDLFFQ-KIRHATLVVREST----PNFASTCNMKNLHTLLAKEEF 564
Query: 120 EYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKI 179
+ S E L L LTCLRAL L I+++P + KL+HL+YL+L ++
Sbjct: 565 BISXVLEALXNLLRHLTCLRALDLS------RNRLIEELPKEVGKLIHLRYLNLSLCYRL 618
Query: 180 EKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIR 239
+LPET+C+LYNL+ LN++ C +L++LP+ +GKL L +L N T SL+ LP GIG L
Sbjct: 619 RELPETICDLYNLQTLNIEGCSSLQKLPQAMGKLINLRHLENCNTGSLKGLPKGIGRLSS 678
Query: 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLR-DCRIRGLGDVSDAGEARRAELEKKKSLLKL 298
L+++ F+V + C +G L+ LN LR I+ L +V DAGEA +AEL+ + L
Sbjct: 679 LQTLDVFIVSSHGNDECQIGDLRNLNNLRGGLSIQRLDEVKDAGEAEKAELKNRVHFQYL 738
Query: 299 GLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFM- 357
L FG ++G + A EAL P PNLK L I Y R P +W M
Sbjct: 739 TLEFG-KKEGTKGVA--------------EALQPHPNLKSLDIFNYGDRE--WP-NWMMG 780
Query: 358 -SLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVI 416
SL L+ L + R C LP LG+LP LE L+I GM VK +G+EFL GSS
Sbjct: 781 SSLAQLKILEIGNCRRCPCLPLLGQLPVLEKLDIWGMDGVKYIGSEFL-------GSSST 833
Query: 417 AFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQ 476
FPKLK L M+ L++ +E K E IMP L+ L C KL+ LPDH+LQ+T LQ
Sbjct: 834 VFPKLKELNISRMDELKQ--WEIKGKEERSIMPCLNHLRTEFCPKLEGLPDHVLQRTPLQ 891
Query: 477 KLHIRRCPILEERCRKETGEDWPKIRHIPEI 507
KL+I PILE R RK+ GED KI HIPE+
Sbjct: 892 KLYIIDSPILERRYRKDIGEDRHKISHIPEV 922
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482792|ref|XP_002268589.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 218/510 (42%), Positives = 293/510 (57%), Gaps = 47/510 (9%)
Query: 1 MAQDYLSEKGPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCS 60
MAQ YL G KEM +G YF LA+RSFFQDF K G I +CKMHDIVHDFAQ+L
Sbjct: 450 MAQSYLKSDGCKEMEMVGRTYFEYLAARSFFQDFEKDDDGNIIRCKMHDIVHDFAQFLTQ 509
Query: 61 NGCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGE 120
N C VE+ + ++ ++ F + KI H L + P + + ++ L +LL +
Sbjct: 510 NECFIVEVDNQKKGSMDLFFQ-KIRHATLVVREST----PNFASTCNMKNLHTLLAKK-- 562
Query: 121 YSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIE 180
++ + +L L + LTCLRAL L I+++P + KL+HL+YL+L +
Sbjct: 563 -AFDSRVLEALGN-LTCLRALDLS------RNRLIEELPKEVGKLIHLRYLNLSLCYSLR 614
Query: 181 KLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240
+LPET+C+LYNL+ LN+ C +R+LP+ +GKL L +L N T L+ LP GIG L L
Sbjct: 615 ELPETICDLYNLQTLNIQGCI-IRKLPQAMGKLINLRHLENYNT-RLKGLPKGIGRLSSL 672
Query: 241 RSVRKFVVGGGYDRACSLGSLKKLNLLRD-CRIRGLGDVSDAGEARRAELEKKKSLLKLG 299
+++ F+V + C +G L+ LN LR I+GL +V DAGEA +AEL+ K L +L
Sbjct: 673 QTLDVFIVSSHGNDECQIGDLRNLNNLRGRLSIQGLDEVKDAGEAEKAELKNKVYLQRLE 732
Query: 300 LHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFM-- 357
L FG G+E G + EAL P PNLK L I Y R P +W M
Sbjct: 733 LKFG----GEEGTKG-----------VAEALQPHPNLKSLDIFNYGDRE--WP-NWMMGS 774
Query: 358 SLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIA 417
SL L+ L L C LPPLG+LP LE L I M V+ +G+EFL GSS
Sbjct: 775 SLAQLKILHLRFCIRCPCLPPLGQLPILEELGILNMHGVQYIGSEFL-------GSSSTV 827
Query: 418 FPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQK 477
FPKLK L M L++ +E K E IMP L+ LT+ +C KL+ LPDH+LQ+T LQK
Sbjct: 828 FPKLKKLRISNMKELKQ--WEIKEKEERSIMPCLNDLTMLACPKLEGLPDHMLQRTPLQK 885
Query: 478 LHIRRCPILEERCRKETGEDWPKIRHIPEI 507
L+I+ PILE R RK+ GED KI HIPE+
Sbjct: 886 LYIKYSPILERRYRKDIGEDGHKISHIPEV 915
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482769|ref|XP_003632834.1| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 213/513 (41%), Positives = 296/513 (57%), Gaps = 48/513 (9%)
Query: 1 MAQDYLSEKGPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCS 60
MAQ YL G KEM +G YF LA+RSFFQDF K G I +C+MHDIVHDFAQ+L
Sbjct: 431 MAQSYLKSDGRKEMEMVGRTYFEYLAARSFFQDFEKDTDGNIIRCEMHDIVHDFAQFLTQ 490
Query: 61 NGCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGE 120
N C VE+ + ++ ++ F + KI H L + P + + ++ L +LL +
Sbjct: 491 NECFIVEVDNQKKGSMDLFFQ-KIRHATLVVREST----PNFASTCNMKNLHTLLAKE-- 543
Query: 121 YSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIE 180
++ + +L L + LTCLRAL L ++I+++P + KL+HL+YL+L + +
Sbjct: 544 -AFDSRVLEALGN-LTCLRALDLS------SNDWIEELPKEVGKLIHLRYLNLSWCESLR 595
Query: 181 KLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240
+LPET+C+LYNL+ LN++ C +L++LP +GKL L +L N T SL+ LP GIG L L
Sbjct: 596 ELPETICDLYNLQTLNIEGCSSLQKLPHAMGKLINLRHLENY-TRSLKGLPKGIGRLSSL 654
Query: 241 RSVRKFVVGGGYDRACSLGSLKKLNLLRD-CRIRGLGDVSDAGEARRAELEKKKSLLKLG 299
+++ F+V + C +G L+ LN LR + GL +V DAGE +AEL+ + L
Sbjct: 655 QTLDVFIVSSHGNDECQIGDLRNLNNLRGRLSVEGLDEVKDAGEPEKAELKNRVHFQYLT 714
Query: 300 LHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFM-- 357
L FG E++ + + EAL P PNLK L I +Y R P +W M
Sbjct: 715 LEFG---------------EKEGTKGVAEALQPHPNLKSLGIVDYGDRE--WP-NWMMGS 756
Query: 358 SLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIA 417
SL L+ L L+ + C LPPLG+LP LE L I GM VK +G+EFL GSS
Sbjct: 757 SLAQLKILHLWFCKRCPCLPPLGQLPVLEKLYIWGMDGVKYIGSEFL-------GSSSTV 809
Query: 418 FPKLKHLTFWVMNALEEL-DFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQ 476
FPKLK L ++ L EL +E K E IMP L+ L + C KL+ LPDH+LQ+T LQ
Sbjct: 810 FPKLKELA---ISGLVELKQWEIKEKEERSIMPCLNHLIMRGCPKLEGLPDHVLQRTPLQ 866
Query: 477 KLHIRRCPILEERCRKETGEDWPKIRHIPEISI 509
KL I PIL+ R RK+ GED KI HIPE+ +
Sbjct: 867 KLDIAGSPILKRRYRKDIGEDRHKISHIPEVEV 899
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482784|ref|XP_002269044.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 327 bits (839), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 215/510 (42%), Positives = 295/510 (57%), Gaps = 46/510 (9%)
Query: 1 MAQDYLSEKGPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCS 60
MAQ YL G KEM +G EYF LA+RSFFQDF K +I +CKMHDIVHDFAQ+L
Sbjct: 450 MAQSYLKSDGSKEMEMVGREYFEYLAARSFFQDFEKDGDDDIIRCKMHDIVHDFAQFLTQ 509
Query: 61 NGCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGE 120
N C VE+ + ++ ++ F + KI H L + + + ++ L +LL +S
Sbjct: 510 NECFVVEVDNQKKGSMDLFFQ-KICHATLVVQESTLN----FASTCNMKNLHTLLAKS-- 562
Query: 121 YSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIE 180
++ + +L L LTCLRAL L + I+++P + KL+HL+YL L + +
Sbjct: 563 -AFDSRVLEAL-GHLTCLRALDLS------WNQLIEELPKEVGKLIHLRYLDLSRCQSLR 614
Query: 181 KLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240
+LPET+C+LYNL+ LN+ +C +L++LP+ +GKL L +L N T SL+ LP GIG L L
Sbjct: 615 ELPETICDLYNLQTLNIQYCISLQKLPQAMGKLINLRHLENY-TRSLKGLPKGIGRLSSL 673
Query: 241 RSVRKFVVGGGYDRACSLGSLKKLNLLR-DCRIRGLGDVSDAGEARRAELEKKKSLLKLG 299
+++ F+V + C +G L+ LN LR I+GL +V DAGEA +AEL+ + SL +L
Sbjct: 674 QTLDVFIVSSHGNDECQIGDLRNLNNLRGGLSIQGLDEVKDAGEAEKAELKNRVSLHRLA 733
Query: 300 LHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFM-- 357
L FG G+E G + EAL P PNLK L I Y R P +W M
Sbjct: 734 LVFG----GEEGTKG-----------VAEALQPHPNLKSLCIYGYGDRE--WP-NWMMGS 775
Query: 358 SLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIA 417
SL L+ L + R C LPPLG+LP LE L I M V +G+EFL GSS
Sbjct: 776 SLAQLKILEIGNCRRCPCLPPLGQLPVLEKLVIWKMYGVIYIGSEFL-------GSSSTV 828
Query: 418 FPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQK 477
FPKLK L + ++ L++ +E K E IMP L+ L C KL+ LPDH+LQ+T LQK
Sbjct: 829 FPKLKELRIFGLDELKQ--WEIKEKEERSIMPCLNHLRTEFCPKLEGLPDHVLQRTPLQK 886
Query: 478 LHIRRCPILEERCRKETGEDWPKIRHIPEI 507
L+I PIL+ R K+ GED KI HIPE+
Sbjct: 887 LYIEGSPILKRRYGKDIGEDRHKISHIPEV 916
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482790|ref|XP_002268671.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 212/510 (41%), Positives = 290/510 (56%), Gaps = 45/510 (8%)
Query: 1 MAQDYLSEKGPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCS 60
MAQ YL G KEM +G YF LA+RSFFQDF K G I CKMHDIVHDFAQ+L
Sbjct: 451 MAQSYLKSDGSKEMEMVGRTYFEYLAARSFFQDFEKDDDGNIIHCKMHDIVHDFAQFLTL 510
Query: 61 NGCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGE 120
N C VE+ + ++ ++ F + KI H L + P + + ++ L +LL +
Sbjct: 511 NECFIVEVDNQKKGSMDLFFQ-KIRHATLVVREST----PNFASTCNMKNLHTLL---AK 562
Query: 121 YSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIE 180
++ + +L L LTCLRAL L + I+++P + KL+HL+YL+L +
Sbjct: 563 RAFDSRVLEAL-GHLTCLRALDLRSNQ------LIEELPKEVGKLIHLRYLNLSYCDSLR 615
Query: 181 KLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240
+LPET+C+LYNL+ LN+ C L++LP+ +GKL L +L N D L+ LP GIG L L
Sbjct: 616 ELPETICDLYNLQTLNIQACSRLQKLPQAMGKLINLRHLENYDADDLQGLPKGIGRLSSL 675
Query: 241 RSVRKFVVGGGYDRACSLGSLKKLNLLRD-CRIRGLGDVSDAGEARRAELEKKKSLLKLG 299
+++ F+V + C + L+ LN LR I+GL +V DAGEA +AEL+ + L +L
Sbjct: 676 QTLDVFIVSSHGNDECQIEDLRNLNNLRGRLSIQGLDEVKDAGEAEKAELQNRVHLQRLT 735
Query: 300 LHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFM-- 357
L FG G+E G + EAL P PNLK L I Y R P +W M
Sbjct: 736 LEFG----GEEGTKG-----------VAEALQPHPNLKFLCIIRYGDRE--WP-NWMMGS 777
Query: 358 SLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIA 417
SL L+ L L C LPPLG+LP LE L I M +K +G+EFL GSS
Sbjct: 778 SLAQLKILHLRFCIRCPCLPPLGQLPVLEELGICFMYGLKYIGSEFL-------GSSSTV 830
Query: 418 FPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQK 477
FPKLK L + ++ L++ +E K E IMP L++L C KL+ LPDH+LQ+ LQK
Sbjct: 831 FPKLKGLYIYGLDELKQ--WEIKEKEERSIMPCLNALRAQHCPKLEGLPDHVLQRAPLQK 888
Query: 478 LHIRRCPILEERCRKETGEDWPKIRHIPEI 507
L+I+ P+LE R RK+ GED KI HIPE+
Sbjct: 889 LNIKYSPVLERRYRKDIGEDGHKISHIPEV 918
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114824|ref|XP_002332291.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222832453|gb|EEE70930.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 215/527 (40%), Positives = 313/527 (59%), Gaps = 55/527 (10%)
Query: 1 MAQDYLSEKGPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCS 60
+AQ YL E +M +GE+YF +LA+RSFFQDF K Y E + KMHDIVHDFAQY+
Sbjct: 452 IAQGYLKETSGGDMEAVGEQYFQVLAARSFFQDF-KTYDREDVRFKMHDIVHDFAQYMTK 510
Query: 61 NGCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGE 120
N CLTV++++ ++T+ + E ++ HL + L + P+ I +GLRSL +++ +
Sbjct: 511 NECLTVDVNNLREATVETSIE-RVRHLSMMLSKETYFPVSI----HKAKGLRSLFIDARD 565
Query: 121 YSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIE 180
W LP +F +LTC+R+L L + + IK+IP + KL+HL++L+L K+E
Sbjct: 566 -PWLGAALPDVFKQLTCIRSLNLSM-------SLIKEIPNEVGKLIHLRHLNLADCYKLE 617
Query: 181 KLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240
LPE +C+L L+ L+V C++L ELP+ IGKL KL +L G+ + ++P GI + L
Sbjct: 618 SLPEIMCDLCKLQSLDVTTCRSLWELPKAIGKLIKLRHLRICGS-IVAFMPKGIERITCL 676
Query: 241 RSVRKFVV-GGGYD--RACSLGSLKKLNLL-RDCRIRGL-GDVSDAGEARRAELEKKKSL 295
R++ F V GGG D +A +L LK LN + R+ L G + A +A A+L+ KK L
Sbjct: 677 RTLDWFAVCGGGEDESKAANLRELKNLNHIGGSLRVYNLRGGLEGARDAAEAQLKNKKRL 736
Query: 296 LKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISW 355
L L+F R+ D L+EAL PP +L+ L I Y G P +W
Sbjct: 737 RCLQLYFDFDREND---------------ILIEALQPPSDLEYLTISRYGGLD--FP-NW 778
Query: 356 FMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVES--DTDGS 413
M+LT L+ L L + N + LPPLG+LP+LE LE+ G+K V+R+ F+G++S + + +
Sbjct: 779 MMTLTRLQELTLDYYVNLKVLPPLGRLPNLESLELRGLK-VRRLDVGFIGIKSVNEREIA 837
Query: 414 SVIAFPKLKHLTFWVMN--ALEELDF--------ETAIKREIIIMPRLSSLTIWSCRKLK 463
V AFPKLK L WV+N +EE D E A I IMP+L LTI +C L+
Sbjct: 838 RVTAFPKLKKL--WVLNLKEVEEWDGIERRSVGEEDANTTSISIMPQLRQLTIRNCPLLR 895
Query: 464 ALPDHLLQKTTLQKLHIRRCPILEERC-RKETGEDWPKIRHIPEISI 509
ALPD++L + LQ++ I CPIL +R ++E GE+W KI HIP ISI
Sbjct: 896 ALPDYVL-ASPLQEMVISICPILRKRYGKEEMGENWQKICHIPYISI 941
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 510 | ||||||
| TAIR|locus:2091662 | 1424 | AT3G14460 [Arabidopsis thalian | 0.521 | 0.186 | 0.294 | 1.3e-23 | |
| TAIR|locus:2091672 | 1054 | AT3G14470 [Arabidopsis thalian | 0.443 | 0.214 | 0.290 | 7.1e-22 | |
| TAIR|locus:2025916 | 906 | AT1G59780 "AT1G59780" [Arabido | 0.225 | 0.126 | 0.333 | 2.1e-12 | |
| TAIR|locus:2078012 | 852 | ZAR1 "HOPZ-ACTIVATED RESISTANC | 0.305 | 0.183 | 0.298 | 2e-11 | |
| TAIR|locus:2176486 | 908 | RPP8 "RECOGNITION OF PERONOSPO | 0.366 | 0.205 | 0.293 | 2.4e-11 | |
| TAIR|locus:2077572 | 926 | RPM1 "RESISTANCE TO P. SYRINGA | 0.213 | 0.117 | 0.390 | 1.2e-10 | |
| TAIR|locus:2152536 | 908 | AT5G48620 [Arabidopsis thalian | 0.405 | 0.227 | 0.275 | 1.7e-10 | |
| TAIR|locus:504956182 | 1049 | AT1G58848 [Arabidopsis thalian | 0.158 | 0.077 | 0.388 | 3e-10 | |
| TAIR|locus:2826978 | 1049 | AT1G59218 [Arabidopsis thalian | 0.158 | 0.077 | 0.388 | 3e-10 | |
| TAIR|locus:2098145 | 1240 | AT3G44630 [Arabidopsis thalian | 0.303 | 0.125 | 0.311 | 4.7e-10 |
| TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 86/292 (29%), Positives = 142/292 (48%)
Query: 1 MAQDYLSE-KGPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLC 59
MA D L + + + + DIG +Y L ++SFFQ + MHD+++D A+ +
Sbjct: 444 MAIDLLYQPRSSRRLEDIGNDYLGDLVAQSFFQRLDITMTSFV----MHDLMNDLAKAVS 499
Query: 60 SNGCLTVEIHSGEQSTISSFGETKILHLMLTLHR-GASVPIPIWDNVKGLRGLRSLLVES 118
+ C +E I T H + + ASV + ++ G LR++L +
Sbjct: 500 GDFCFRLE-----DDNIPEIPSTT-RHFSFSRSQCDASVA---FRSICGAEFLRTILPFN 550
Query: 119 GEYSWSN-EILPQLFDKLTCLRALK-LEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQ 176
S + ++ ++ + L L AL L + Y I +P +++ L L+YL L
Sbjct: 551 SPTSLESLQLTEKVLNPL--LNALSGLRILSLSHYQ--ITNLPKSLKGLKLLRYLDL-SS 605
Query: 177 KKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGE 236
KI++LPE +C L NL+ L + +C++L LP+ I +L L L GT + +P GI +
Sbjct: 606 TKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGTPLVE-MPPGIKK 664
Query: 237 LIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDC-RIRGLGDVSDAGEARRA 287
L L+ + FV+G L LK+L+ LR RI L +V+ A EA+ A
Sbjct: 665 LRSLQKLSNFVIGRL--SGAGLHELKELSHLRGTLRISELQNVAFASEAKDA 714
|
|
| TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 205 (77.2 bits), Expect = 7.1e-22, Sum P(2) = 7.1e-22
Identities = 70/241 (29%), Positives = 121/241 (50%)
Query: 47 MHDIVHDFAQYLCSNGCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDNVK 106
MHD +++ AQ+ ++G + + G + +S T+ L L + P+ ++ ++
Sbjct: 492 MHDFINELAQF--ASGEFSSKFEDGCKLQVSE--RTRYLSY---LRDNYAEPME-FEALR 543
Query: 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEK-L 165
++ LR+ L S S + L Q+ + +L V Y I ++P + K +
Sbjct: 544 EVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYK--IARLPPDFFKNI 601
Query: 166 LHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTD 225
H ++L L + ++EKLP++LC +YNL+ L + +C +L+ELP I L L YL GT
Sbjct: 602 SHARFLDL-SRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGT- 659
Query: 226 SLRYLPAGIGELIRLRSVRKFVVGGGY-DRACSLGSLKKLN-LLRDCRIRGLGDVSDAGE 283
LR +P G L L+++ F V R LG L L+ L+ ++ + DV+DA E
Sbjct: 660 KLRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAE 719
Query: 284 A 284
A
Sbjct: 720 A 720
|
|
| TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 129 (50.5 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 42/126 (33%), Positives = 66/126 (52%)
Query: 382 LPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAI 441
+P+LE L ++ +K V N ++G G FP L L W ++ALEE E
Sbjct: 770 MPTLEKL-LQ-LKVVSLWYNAYVGRRMVCTGGG---FPPLHRLEIWGLDALEEWIVEEGS 824
Query: 442 KREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPILEERCRKETGEDWPKI 501
MP L +L I C+KLK +PD L ++L++L IR + ++ + GED+ K+
Sbjct: 825 ------MPLLHTLHIVDCKKLKEIPDGLRFISSLKELAIRTNEKVFQKKVSKGGEDYYKM 878
Query: 502 RHIPEI 507
+H+P I
Sbjct: 879 QHVPLI 884
|
|
| TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 162 (62.1 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 48/161 (29%), Positives = 78/161 (48%)
Query: 108 LRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLH 167
LRG+ S ++GE + N L + F LR L + + ++ + +I I L H
Sbjct: 532 LRGVVST-TKTGEVNKLNSDLAKKFTDCKYLRVLDIS---KSIFDAPLSEILDEIASLQH 587
Query: 168 LKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSL 227
L LSL + + P ++ +L+NL+ L+ +C+NL++L I +KL+ L SL
Sbjct: 588 LACLSLSNTHPLIQFPRSMEDLHNLQILDASYCQNLKQLQPCIVLFKKLLVLDMTNCGSL 647
Query: 228 RYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLR 268
P GIG L++L + F + C L +K L LR
Sbjct: 648 ECFPKGIGSLVKLEVLLGFKPARS-NNGCKLSEVKNLTNLR 687
|
|
| TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 62/211 (29%), Positives = 97/211 (45%)
Query: 16 DIGEEYFNILASRSFF--QDFYKGYGGEIYKCKMHDIVHDFAQYLCSN-GCLTVEIHSGE 72
D GE Y L R+ D Y + + Y C+MHD++ + L + I
Sbjct: 461 DSGEYYLEELVRRNLVIADDNYLSWQSK-Y-CQMHDMMREVCLSKAKEENFLQIIIDPTC 518
Query: 73 QSTISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYS-WSNEILPQL 131
STI++ ++ L ++H G + I K +RSL+V E W +
Sbjct: 519 TSTINAQSPSRSRRL--SIHSGKAFHIL---GHKNKTKVRSLIVPRFEEDYWIRSA--SV 571
Query: 132 FDKLTCLRALKLE-VREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELY 190
F LT LR L L V+ +G K+P +I L+HL+YLSL+ + K+ LP T+ L
Sbjct: 572 FHNLTLLRVLDLSWVKFEG------GKLPCSIGGLIHLRYLSLY-EAKVSHLPSTMRNLK 624
Query: 191 NLERLN--VDHCKNLRELPRGIGKLRKLMYL 219
L LN VD + + +P + ++ +L YL
Sbjct: 625 LLLYLNLRVDTEEPIH-VPNVLKEMIQLRYL 654
|
|
| TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 154 (59.3 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 50/128 (39%), Positives = 70/128 (54%)
Query: 103 DNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI 162
D+++ L SLLV S E+LP L LRAL LE + I K+P +
Sbjct: 554 DSIRATN-LHSLLVCSSA-KHKMELLPSL----NLLRALDLE-------DSSISKLPDCL 600
Query: 163 EKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYL--- 219
+ +LKYL+L + ++++LP+ +L NLE LN H K + ELP G+ KL+KL YL
Sbjct: 601 VTMFNLKYLNL-SKTQVKELPKNFHKLVNLETLNTKHSK-IEELPLGMWKLKKLRYLITF 658
Query: 220 -HNEGTDS 226
NEG DS
Sbjct: 659 RRNEGHDS 666
|
|
| TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 120 (47.3 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 64/232 (27%), Positives = 102/232 (43%)
Query: 16 DIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCSNGCLTVEIHSGEQST 75
D GE Y L R+ + E C+MHD++ + ++I ST
Sbjct: 461 DSGEYYLEELVRRNLVIADNRYLSLEFNFCQMHDMMREVCLSKAKEENF-LQIIKDPTST 519
Query: 76 ISSFGETKILHLMLTLHRGASVPI-PIWDNVKGLRGLRSLLVESGEYS-WSNEILPQLFD 133
+ ++ ++H G + I +N K +RSL+V E W +F
Sbjct: 520 STINAQSPSRSRRFSIHSGKAFHILGHRNNPK----VRSLIVSRFEEDFWIRSA--SVFH 573
Query: 134 KLTCLRALKLE-VREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNL 192
LT LR L L V+ +G K+P++I L+HL+YLSL+G + LP T+ L L
Sbjct: 574 NLTLLRVLDLSRVKFEG------GKLPSSIGGLIHLRYLSLYGAV-VSHLPSTMRNLKLL 626
Query: 193 ERLN--VDHCKNLRELPRGIGKLRKLMYLH--NEGTDSLRYLPAGIGELIRL 240
LN VD+ K +P + ++ +L YL E D + +G+L+ L
Sbjct: 627 LFLNLRVDN-KEPIHVPNVLKEMLELRYLSLPQEMDDKTKL---ELGDLVNL 674
|
|
| TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 115 (45.5 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 418 FPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQK 477
FP+L++L +N LEE + E + E MP L +L IW+C KLK LPD L +L+
Sbjct: 966 FPQLQNLE---LNELEEWE-EWIV--EDGSMPLLHTLRIWNCPKLKQLPDGLRFIYSLKN 1019
Query: 478 LHIRRCPILEERCRKETGEDWPKIRHIPEI 507
L + + ++R K GED+ K++HIP +
Sbjct: 1020 LTVPKR--WKKRLSKG-GEDYYKVQHIPSV 1046
|
|
| TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 115 (45.5 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 418 FPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQK 477
FP+L++L +N LEE + E + E MP L +L IW+C KLK LPD L +L+
Sbjct: 966 FPQLQNLE---LNELEEWE-EWIV--EDGSMPLLHTLRIWNCPKLKQLPDGLRFIYSLKN 1019
Query: 478 LHIRRCPILEERCRKETGEDWPKIRHIPEI 507
L + + ++R K GED+ K++HIP +
Sbjct: 1020 LTVPKR--WKKRLSKG-GEDYYKVQHIPSV 1046
|
|
| TAIR|locus:2098145 AT3G44630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 156 (60.0 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 53/170 (31%), Positives = 86/170 (50%)
Query: 101 IWDNVKGLRGLRSLLVESGEYSWSNEI--LPQLFDKLTCLRALKLEVREQGLYTNFIKKI 158
+W+ K LR L+ + + S S ++ LP +KLT L+ L L R+ + + K+
Sbjct: 731 LWEGTKQLRNLKWM-----DLSDSRDLKELPSSIEKLTSLQILDL--RD----CSSLVKL 779
Query: 159 PTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMY 218
P +I +L+ LSL ++ KLP + + NL +L + +C +L ELP IG L
Sbjct: 780 PPSINAN-NLQGLSLTNCSRVVKLP-AIENVTNLHQLKLQNCSSLIELPLSIGTANNLWK 837
Query: 219 LHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLR 268
L G SL LP+ IG++ L+ + S+G+L+KL +LR
Sbjct: 838 LDIRGCSSLVKLPSSIGDMTNLKEFDLSNCSNLVELPSSIGNLQKLFMLR 887
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 510 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 2e-07 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.002 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 0.004 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 79/320 (24%), Positives = 128/320 (40%), Gaps = 63/320 (19%)
Query: 106 KGLRGLRSLLVESGEYSWSNEI---LPQLFDKLTC-LRALKLE-VREQGLYTNF------ 154
KG+R L L + ++ E+ LP+ FD L LR L+ + + + +NF
Sbjct: 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLV 614
Query: 155 --------IKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLREL 206
++K+ + L L+ + L G K ++++P+ L NLE L + C +L EL
Sbjct: 615 KLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVEL 673
Query: 207 PRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266
P I L KL L ++L LP GI +L SL +LNL
Sbjct: 674 PSSIQYLNKLEDLDMSRCENLEILPTGI----------------------NLKSLYRLNL 711
Query: 267 LRDCRIRGLGDVS------DAGEARRAELEKK---KSLLKLGLHFGHSRDGDEERAGRRE 317
R++ D+S D E E ++L +L L E ++ +
Sbjct: 712 SGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILC--------EMKSEKLW 763
Query: 318 NEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLP 377
L+ L P+L +L + + +P S +L L L + N E LP
Sbjct: 764 ERVQPLTPLMTML--SPSLTRLFLSDIPSLVE-LPSS-IQNLHKLEHLEIENCINLETLP 819
Query: 378 PLGKLPSLEYLEIEGMKSVK 397
L SLE L++ G ++
Sbjct: 820 TGINLESLESLDLSGCSRLR 839
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 66/254 (25%), Positives = 93/254 (36%), Gaps = 58/254 (22%)
Query: 150 LYTNFIKKIPTNIEKL-LHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPR 208
L N I IP I L +LK L L KIE LP L L NL+ L++ +L +LP+
Sbjct: 123 LDNNNITDIPPLIGLLKSNLKELDL-SDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPK 180
Query: 209 GIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLR 268
+ L L L G + LP I L L + L + + LL
Sbjct: 181 LLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEEL-------------DLSNNSIIELL- 225
Query: 269 DCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLE 328
+ L K+L L L N+ E L E
Sbjct: 226 ------------------SSLSNLKNLSGLELS---------------NNKL---EDLPE 249
Query: 329 ALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYL 388
++G NL+ L + + IS SLTNLR L L G LP + L L L
Sbjct: 250 SIGNLSNLETLDLS----NNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLEL 305
Query: 389 EIEGMKSVKRVGNE 402
+ + ++K + +
Sbjct: 306 LLNLLLTLKALELK 319
|
Length = 394 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 134 KLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLE 193
L L + E L N I ++ +++ L +L L L K+E LPE++ L NLE
Sbjct: 200 DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLE 258
Query: 194 RLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPA 232
L++ + N +G L L L G LP
Sbjct: 259 TLDLSN--NQISSISSLGSLTNLRELDLSGNSLSNALPL 295
|
Length = 394 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.004
Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 53/191 (27%)
Query: 104 NVKGLRGLRSLLVESGEYSW------------SNEILPQLFDKLTC-LRALKLEVREQGL 150
N+ G L+S S SW SN L L + + C +++ KL R Q L
Sbjct: 710 NLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPL 769
Query: 151 YTNFIK------------------KIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNL 192
T + ++P++I+ L L++L + +E LP T L +L
Sbjct: 770 -TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP-TGINLESL 827
Query: 193 ERLNVDHCKNLR--------------------ELPRGIGKLRKLMYLHNEGTDSLRYLPA 232
E L++ C LR E+P I K L +L G ++L+ +
Sbjct: 828 ESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887
Query: 233 GIGELIRLRSV 243
I +L L +V
Sbjct: 888 NISKLKHLETV 898
|
syringae 6; Provisional. Length = 1153 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 510 | |||
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.98 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.96 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.96 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.93 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.93 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.93 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.92 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.9 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.84 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.81 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.75 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.67 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.63 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.61 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.6 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.59 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.58 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.57 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.55 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.53 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.48 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.4 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.15 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.08 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.04 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.99 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.96 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.92 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.87 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.87 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.85 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.74 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.73 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.71 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.71 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.65 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.64 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.53 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.52 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.48 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.48 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.39 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.31 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.21 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.15 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.13 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.06 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.99 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.99 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.97 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.93 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.91 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.89 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.82 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.75 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.75 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.73 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.57 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.47 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.43 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.31 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.11 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.94 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.78 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.58 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.35 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.05 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.86 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.39 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.39 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.21 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 95.04 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 94.74 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.91 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 92.63 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 89.43 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 89.43 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 89.36 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 89.36 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 88.84 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 87.16 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 84.39 |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=292.48 Aligned_cols=207 Identities=26% Similarity=0.364 Sum_probs=175.7
Q ss_pred CCCCCcCCC-CCCCHHHHHHHHHHHHHhCCCCceeecCCCCcEeeEEeChhHHHHHHHHhc-----CCeEEeecc-Cccc
Q 010462 1 MAQDYLSEK-GPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCS-----NGCLTVEIH-SGEQ 73 (510)
Q Consensus 1 iaeg~i~~~-~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~~-----~e~~~~~~~-~~~~ 73 (510)
||||||.+. ++.+++|.|+.|+++||++||++..... ++..+|+|||+|||+|.|+|+ .+.++...+ +...
T Consensus 438 iaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~ 515 (889)
T KOG4658|consen 438 IAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSE 515 (889)
T ss_pred HhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccc
Confidence 799999994 5688999999999999999999987654 677889999999999999999 566555543 4444
Q ss_pred ccccCCCCCceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccc
Q 010462 74 STISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTN 153 (510)
Q Consensus 74 ~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 153 (510)
.+....| ..+|+++++++.....+... .+++|++|.+..|.. +...+...+|..++.|++|||+ +|
T Consensus 516 ~~~~~~~-~~~rr~s~~~~~~~~~~~~~-----~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs-------~~ 581 (889)
T KOG4658|consen 516 IPQVKSW-NSVRRMSLMNNKIEHIAGSS-----ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLS-------GN 581 (889)
T ss_pred cccccch-hheeEEEEeccchhhccCCC-----CCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECC-------CC
Confidence 5555556 88999999999887665555 678999999999862 3455567779999999999999 55
Q ss_pred c-cccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCC
Q 010462 154 F-IKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGT 224 (510)
Q Consensus 154 ~-~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 224 (510)
. +..+|+.|+++.+||||+++++. +..+|..+++|++|.+|++..+.....+|.....|++|++|.+...
T Consensus 582 ~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 582 SSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred CccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 5 78999999999999999999999 9999999999999999999998877777776777999999998765
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=292.18 Aligned_cols=416 Identities=21% Similarity=0.234 Sum_probs=262.6
Q ss_pred HHHHHHhCCCCceeecCCCCcEeeEEeChhHHHHHHHHhcCCe-------EEeeccCcccccccCCCCCceeEEEEEeec
Q 010462 21 YFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCSNGC-------LTVEIHSGEQSTISSFGETKILHLMLTLHR 93 (510)
Q Consensus 21 ~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~~~e~-------~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~ 93 (510)
-++.|+++||++.... .++|||++|+||+++++++. +...............+..+++.+++....
T Consensus 471 ~l~~L~~ksLi~~~~~-------~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~ 543 (1153)
T PLN03210 471 GLKNLVDKSLIHVRED-------IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDE 543 (1153)
T ss_pred ChHHHHhcCCEEEcCC-------eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCc
Confidence 4889999999987432 48999999999999987653 222211111111112222677888776555
Q ss_pred CCCccccccccccCCCCccEEEeccCCcC---ccccchhHhhhcCC-ceeEEEeccccccccccccccccccccccCccc
Q 010462 94 GASVPIPIWDNVKGLRGLRSLLVESGEYS---WSNEILPQLFDKLT-CLRALKLEVREQGLYTNFIKKIPTNIEKLLHLK 169 (510)
Q Consensus 94 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~ 169 (510)
...... -..+|.++++|+.|.+..+... .....+|..|..++ .||.|++. ++.+..+|..+ ...+|+
T Consensus 544 ~~~~~i-~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~-------~~~l~~lP~~f-~~~~L~ 614 (1153)
T PLN03210 544 IDELHI-HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD-------KYPLRCMPSNF-RPENLV 614 (1153)
T ss_pred cceeee-cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEec-------CCCCCCCCCcC-CccCCc
Confidence 443111 1224558999999988765310 11112455565554 58888888 77788888776 467888
Q ss_pred eEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEe
Q 010462 170 YLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVG 249 (510)
Q Consensus 170 ~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 249 (510)
+|++.++. +..+|..+..+++|+.|++++|..+..+|. +..+++|+.|++++|..+..+|..++.+++|+.|++..|.
T Consensus 615 ~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 615 KLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred EEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 88888887 778887788888888888888776777775 7778888888888887777888888888888888877665
Q ss_pred CccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCccc-c---cCCCCcchhhHh
Q 010462 250 GGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEER-A---GRRENEEDEDER 325 (510)
Q Consensus 250 ~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~---~~~~~~~~~~~~ 325 (510)
... ..+.. .++++|+.|++.+|..+..+.. ...+|+.|+++.+.....+... . ............
T Consensus 693 ~L~---~Lp~~-i~l~sL~~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 693 NLE---ILPTG-INLKSLYRLNLSGCSRLKSFPD-------ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK 761 (1153)
T ss_pred CcC---ccCCc-CCCCCCCEEeCCCCCCcccccc-------ccCCcCeeecCCCccccccccccccccccccccccchhh
Confidence 432 11111 2566677777776654432211 1245666766665422111000 0 000000000000
Q ss_pred h--------hccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccE
Q 010462 326 L--------LEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVK 397 (510)
Q Consensus 326 ~--------~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~ 397 (510)
+ +.....+++|+.|++++|..... +| .++.++++|+.|+|++|..++.+|....+++|+.|+|++|..+.
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP-~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LP-SSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLR 839 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccc-cC-hhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccc
Confidence 0 00011235666777766654433 56 56666777777777777666666664466777777777766554
Q ss_pred EecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcE
Q 010462 398 RVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQK 477 (510)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 477 (510)
.++. ..++|+.|++.++. ++ .+|..+..+++|+.|++.+|+.++.+|..+..+++|+.
T Consensus 840 ~~p~---------------~~~nL~~L~Ls~n~-i~------~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~ 897 (1153)
T PLN03210 840 TFPD---------------ISTNISDLNLSRTG-IE------EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLET 897 (1153)
T ss_pred cccc---------------cccccCEeECCCCC-Cc------cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCe
Confidence 4332 23466666665542 32 35666788999999999999999999998888999999
Q ss_pred EEEcCCcchHHH
Q 010462 478 LHIRRCPILEER 489 (510)
Q Consensus 478 L~l~~c~~l~~~ 489 (510)
+++++|+.|++.
T Consensus 898 L~l~~C~~L~~~ 909 (1153)
T PLN03210 898 VDFSDCGALTEA 909 (1153)
T ss_pred eecCCCcccccc
Confidence 999999988754
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=275.95 Aligned_cols=362 Identities=16% Similarity=0.172 Sum_probs=187.3
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccc-cccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIK-KIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~lp~ 160 (510)
.+++.|++.++.+.... ...+..+++|++|++++|++. ..+.+..+..+++||+|+++ +|.+. .+|.
T Consensus 69 ~~v~~L~L~~~~i~~~~---~~~~~~l~~L~~L~Ls~n~~~--~~ip~~~~~~l~~L~~L~Ls-------~n~l~~~~p~ 136 (968)
T PLN00113 69 SRVVSIDLSGKNISGKI---SSAIFRLPYIQTINLSNNQLS--GPIPDDIFTTSSSLRYLNLS-------NNNFTGSIPR 136 (968)
T ss_pred CcEEEEEecCCCccccC---ChHHhCCCCCCEEECCCCccC--CcCChHHhccCCCCCEEECc-------CCccccccCc
Confidence 45777777766554311 122336777777777777621 12222334466677777766 44432 2232
Q ss_pred cccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 240 (510)
+.+++|++|++++|.+.+.+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|
T Consensus 137 --~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 137 --GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred --cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 234455555555554333445445555555555555554334445445555555555555554444444444555555
Q ss_pred cccCcEEEeCccCCccCcccccccccCCCceecCcccCC--------------------ChhhhhHhhccCCCCCCeEEE
Q 010462 241 RSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVS--------------------DAGEARRAELEKKKSLLKLGL 300 (510)
Q Consensus 241 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~--------------------~~~~~~~~~l~~~~~L~~L~l 300 (510)
+.|++..+... ...+..+..+++|+.|++.++.... ......+..+..+++|+.|++
T Consensus 215 ~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 215 KWIYLGYNNLS---GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred cEEECcCCccC---CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence 55544444332 1222333444444444443321100 000112223334455555555
Q ss_pred EecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-C
Q 010462 301 HFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-L 379 (510)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~ 379 (510)
++|. .....+..+..+++|+.|++++|..... .| .++..+++|+.|++++|.....+|. +
T Consensus 292 s~n~-----------------l~~~~p~~~~~l~~L~~L~l~~n~~~~~-~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 292 SDNS-----------------LSGEIPELVIQLQNLEILHLFSNNFTGK-IP-VALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred cCCe-----------------eccCCChhHcCCCCCcEEECCCCccCCc-CC-hhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 5443 2233445556667777777777766542 45 5666777777777777766555554 6
Q ss_pred CCCCccceeeccCccccEEecccccCCC------------CCCCCCcccccccccccccccccccccccccccccccccc
Q 010462 380 GKLPSLEYLEIEGMKSVKRVGNEFLGVE------------SDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIII 447 (510)
Q Consensus 380 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~------------~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~ 447 (510)
+.+++|+.|++++|.....++..+.... .......+..+++|+.|++.+|. +.+..|..+..
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~------l~~~~p~~~~~ 426 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS------FSGELPSEFTK 426 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE------eeeECChhHhc
Confidence 6677777777776653223322211100 00000112344555555555443 23445666677
Q ss_pred CcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcc
Q 010462 448 MPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 448 l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 485 (510)
+++|+.|++++|.....+|..+..+++|+.|++++|..
T Consensus 427 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred CCCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence 78888888888766666666666778888888888754
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=276.12 Aligned_cols=379 Identities=18% Similarity=0.171 Sum_probs=222.9
Q ss_pred CceeEEEEEeecCCC-ccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccc-ccc
Q 010462 82 TKILHLMLTLHRGAS-VPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIK-KIP 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~lp 159 (510)
..++.|++.++.+.. .+..+. .+++|++|++++|. +....|..+..+++|++|+++ +|.+. .+|
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~----~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~-------~n~l~~~~p 205 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIG----SFSSLKVLDLGGNV---LVGKIPNSLTNLTSLEFLTLA-------SNQLVGQIP 205 (968)
T ss_pred CCCCEEECcCCcccccCChHHh----cCCCCCEEECccCc---ccccCChhhhhCcCCCeeecc-------CCCCcCcCC
Confidence 778899998887753 444444 88999999999887 444467778888889999888 66644 567
Q ss_pred ccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccc
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIR 239 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 239 (510)
..++++.+|++|++++|...+.+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..+..+++
T Consensus 206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 285 (968)
T PLN00113 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285 (968)
T ss_pred hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccC
Confidence 88888888888888888855577888888888888888888755677877888888888888887666667777777777
Q ss_pred ccccCcEEEeCccCCccCcccccccccCCCceecCcccCCC--------------------hhhhhHhhccCCCCCCeEE
Q 010462 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSD--------------------AGEARRAELEKKKSLLKLG 299 (510)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~--------------------~~~~~~~~l~~~~~L~~L~ 299 (510)
|+.|++..+... ...+..+..+++|+.+++.+...... .....+..+..+++|+.|+
T Consensus 286 L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 286 LISLDLSDNSLS---GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred cCEEECcCCeec---cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 777777666543 22333344555555555543211100 0011122233344444444
Q ss_pred EEecCCCCCCcccccCC-------CCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccC
Q 010462 300 LHFGHSRDGDEERAGRR-------ENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRN 372 (510)
Q Consensus 300 l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~ 372 (510)
+++|............. ..........+..+..+++|+.|++++|..... +| ..+..+++|+.|++++|..
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~-~p-~~~~~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE-LP-SEFTKLPLVYFLDISNNNL 440 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE-CC-hhHhcCCCCCEEECcCCcc
Confidence 44443211000000000 000001112233344455566666665555432 44 4555666666666666654
Q ss_pred CCcCCC-CCCCCccceeeccCccccEEecccccCC-----------CCCCCCCccccccccccccccccccccccccccc
Q 010462 373 CEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGV-----------ESDTDGSSVIAFPKLKHLTFWVMNALEELDFETA 440 (510)
Q Consensus 373 ~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~ 440 (510)
...++. +..+++|+.|++++|.....++..+... ........+..+++|+.|++++|. +.+.
T Consensus 441 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~------l~~~ 514 (968)
T PLN00113 441 QGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK------LSGE 514 (968)
T ss_pred cCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCc------ceee
Confidence 444443 4556667777776665333332211000 000000112233334444433332 3345
Q ss_pred cccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcc
Q 010462 441 IKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 441 ~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 485 (510)
.|..+..+++|+.|+|++|...+.+|..+..+++|+.|++++|..
T Consensus 515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred CChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 666677788888888888877677787788888888888888864
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-28 Score=230.56 Aligned_cols=342 Identities=21% Similarity=0.222 Sum_probs=184.0
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccc--ccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIK--KIP 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~lp 159 (510)
..++-|-+.......+|..+. .+.+|.+|.+..|+ ... +...+..++.||.+++. +|.+. .+|
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~----~lqkLEHLs~~HN~---L~~-vhGELs~Lp~LRsv~~R-------~N~LKnsGiP 96 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELS----RLQKLEHLSMAHNQ---LIS-VHGELSDLPRLRSVIVR-------DNNLKNSGIP 96 (1255)
T ss_pred hheeEEEechhhhhhChHHHH----HHhhhhhhhhhhhh---hHh-hhhhhccchhhHHHhhh-------ccccccCCCC
Confidence 344444454444444555544 55555555555555 222 12224555555555555 44432 345
Q ss_pred ccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchh-hhccccCceeecCCCcccccccccccCcc
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPAGIGELI 238 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 238 (510)
..|.++..|..|+|+.|+ +++.|..+...+++-+|+|++|. ++.+|.. +.+|+.|-+||+++| .+..+|+.+.++.
T Consensus 97 ~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLS 173 (1255)
T ss_pred chhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHh
Confidence 555556666666666665 55566555555566666666555 5555544 335555556666555 4455555555566
Q ss_pred cccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCC
Q 010462 239 RLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRREN 318 (510)
Q Consensus 239 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 318 (510)
.|++|.++++... -+-+..++.++.|+.|.+++.+..- ...+..+..+.+|..++++.|.
T Consensus 174 ~LqtL~Ls~NPL~---hfQLrQLPsmtsL~vLhms~TqRTl---~N~Ptsld~l~NL~dvDlS~N~-------------- 233 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLN---HFQLRQLPSMTSLSVLHMSNTQRTL---DNIPTSLDDLHNLRDVDLSENN-------------- 233 (1255)
T ss_pred hhhhhhcCCChhh---HHHHhcCccchhhhhhhcccccchh---hcCCCchhhhhhhhhccccccC--------------
Confidence 6666655555443 2233444444445555444422211 1122334445566666666554
Q ss_pred cchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccE
Q 010462 319 EEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVK 397 (510)
Q Consensus 319 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~ 397 (510)
...+|+.+..+++|++|+|++|.+++ +. -....-.+|++|+++.| .++.+|. +..+++|+.|++.+|+ +
T Consensus 234 ----Lp~vPecly~l~~LrrLNLS~N~ite--L~-~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~Nk-L- 303 (1255)
T KOG0444|consen 234 ----LPIVPECLYKLRNLRRLNLSGNKITE--LN-MTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNK-L- 303 (1255)
T ss_pred ----CCcchHHHhhhhhhheeccCcCceee--ee-ccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCc-c-
Confidence 22344555566667777777666665 43 23334456667777666 3444554 6666777777666654 1
Q ss_pred EecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcE
Q 010462 398 RVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQK 477 (510)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 477 (510)
.|.|.. +.++.+.+|+.+...++. | +.+|..++.++.|+.|.++.| .+-.+|..+.-++.|+.
T Consensus 304 ----~FeGiP-----SGIGKL~~Levf~aanN~-L------ElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~v 366 (1255)
T KOG0444|consen 304 ----TFEGIP-----SGIGKLIQLEVFHAANNK-L------ELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKV 366 (1255)
T ss_pred ----cccCCc-----cchhhhhhhHHHHhhccc-c------ccCchhhhhhHHHHHhccccc-ceeechhhhhhcCCcce
Confidence 111111 124455566666655542 2 234555566777777777665 44567777777777777
Q ss_pred EEEcCCcchHH
Q 010462 478 LHIRRCPILEE 488 (510)
Q Consensus 478 L~l~~c~~l~~ 488 (510)
||++.||+|.-
T Consensus 367 LDlreNpnLVM 377 (1255)
T KOG0444|consen 367 LDLRENPNLVM 377 (1255)
T ss_pred eeccCCcCccC
Confidence 77777776543
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-26 Score=213.55 Aligned_cols=340 Identities=18% Similarity=0.141 Sum_probs=194.8
Q ss_pred CCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCcccc-chhhh
Q 010462 109 RGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKL-PETLC 187 (510)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l-p~~~~ 187 (510)
+..++|++++|. +.++-+.+|.++++|+.+++. .|.+..+|.......||+.|+|.+|. +..+ .+++.
T Consensus 78 ~~t~~LdlsnNk---l~~id~~~f~nl~nLq~v~l~-------~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~ 146 (873)
T KOG4194|consen 78 SQTQTLDLSNNK---LSHIDFEFFYNLPNLQEVNLN-------KNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELS 146 (873)
T ss_pred cceeeeeccccc---cccCcHHHHhcCCcceeeeec-------cchhhhcccccccccceeEEeeeccc-cccccHHHHH
Confidence 556678888887 555566677888888888888 78888888766667778888888887 5554 34577
Q ss_pred cccccceeccCCCCccccCchh-hhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 188 ELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 188 ~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
.++.|+.|||+.|. +.++|.. +..-.++++|+|++|.....-...+..+.+|-+|.+..+.+.. -....+++|++
T Consensus 147 ~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt---Lp~r~Fk~L~~ 222 (873)
T KOG4194|consen 147 ALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT---LPQRSFKRLPK 222 (873)
T ss_pred hHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc---cCHHHhhhcch
Confidence 77888888888877 6655532 4444677777777775544333456666677777777666653 23344455556
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCC-------CcchhhHhhhccCCCCCCccEE
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRE-------NEEDEDERLLEALGPPPNLKKL 339 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~L~~L 339 (510)
|+.|++.. +.........|.++++|+.|.+..|...-.+..-+.... .........-.++..++.|+.|
T Consensus 223 L~~LdLnr----N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L 298 (873)
T KOG4194|consen 223 LESLDLNR----NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL 298 (873)
T ss_pred hhhhhccc----cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhh
Confidence 66655543 111112233455555555555555542111000000000 0000222223344445555555
Q ss_pred EEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCccccc
Q 010462 340 RIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAF 418 (510)
Q Consensus 340 ~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 418 (510)
++++|.+.. +..+....+++|+.|+|++|...+.-+. +..+..|++|+|+.|. +.++.... +.++
T Consensus 299 ~lS~NaI~r--ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~a-----------f~~l 364 (873)
T KOG4194|consen 299 DLSYNAIQR--IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGA-----------FVGL 364 (873)
T ss_pred ccchhhhhe--eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhH-----------HHHh
Confidence 555555444 2223334555555555555533222222 4455555555555544 33332221 2355
Q ss_pred cccccccccccccccccccccccccccccCcccceeeeccCcccccCCc-ccCCCCCCcEEEEcCCcc
Q 010462 419 PKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPD-HLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 419 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~ 485 (510)
.+|++|+++++. + +|.+.+ ....|..+++|++|.+.+| +++.+|. .+..+++|++|++.+|+.
T Consensus 365 ssL~~LdLr~N~-l-s~~IED-aa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 365 SSLHKLDLRSNE-L-SWCIED-AAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhhhhhcCcCCe-E-EEEEec-chhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcc
Confidence 667777666542 2 122222 3445567999999999888 6788886 566788999999988864
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-26 Score=217.96 Aligned_cols=341 Identities=18% Similarity=0.196 Sum_probs=221.7
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-T 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~ 160 (510)
++++.+.+..|....+|.... ...+|+.|+|.+|. +..+-...+..++.||.|||+ .|.|..+| .
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~----~sghl~~L~L~~N~---I~sv~se~L~~l~alrslDLS-------rN~is~i~~~ 167 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGH----ESGHLEKLDLRHNL---ISSVTSEELSALPALRSLDLS-------RNLISEIPKP 167 (873)
T ss_pred Ccceeeeeccchhhhcccccc----cccceeEEeeeccc---cccccHHHHHhHhhhhhhhhh-------hchhhcccCC
Confidence 344444444444444443333 34445555555555 333334446666667777777 66666665 3
Q ss_pred cccccCccceEeccCCCCccccc-hhhhcccccceeccCCCCccccCchhh-hccccCceeecCCCcccccc-cccccCc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLRELPRGI-GKLRKLMYLHNEGTDSLRYL-PAGIGEL 237 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~~~~~-p~~l~~l 237 (510)
++..-.++++|+|++|. ++.+. ..|..+.+|.+|.|+.|+ ++.+|... .+|++|+.|+|..|. ++.. --.+.++
T Consensus 168 sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL 244 (873)
T KOG4194|consen 168 SFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGL 244 (873)
T ss_pred CCCCCCCceEEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCc
Confidence 45555667777777777 66653 346666777777777777 66666543 347777777777773 2322 2335667
Q ss_pred ccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCC
Q 010462 238 IRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRE 317 (510)
Q Consensus 238 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 317 (510)
.+|+.|.+..+++.......+-.+ .+++.+++.. +.........+-+++.|+.|++++|.
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~Fy~l---~kme~l~L~~----N~l~~vn~g~lfgLt~L~~L~lS~Na------------- 304 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAFYGL---EKMEHLNLET----NRLQAVNEGWLFGLTSLEQLDLSYNA------------- 304 (873)
T ss_pred hhhhhhhhhhcCcccccCcceeee---cccceeeccc----chhhhhhcccccccchhhhhccchhh-------------
Confidence 777777777666654222233222 3333433332 11111222345577889999999986
Q ss_pred CcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CCCCCccceeeccCccc
Q 010462 318 NEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKLPSLEYLEIEGMKS 395 (510)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~~ 395 (510)
.....++++..+++|+.|+|++|.+.. ++...+..+..|+.|.|+.|. +..+.. +..+.+|++|+|+.|.
T Consensus 305 ----I~rih~d~WsftqkL~~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~- 376 (873)
T KOG4194|consen 305 ----IQRIHIDSWSFTQKLKELDLSSNRITR--LDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNE- 376 (873)
T ss_pred ----hheeecchhhhcccceeEecccccccc--CChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCe-
Confidence 445567778888999999999999998 876788899999999999994 444443 7789999999999987
Q ss_pred cEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCC
Q 010462 396 VKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTL 475 (510)
Q Consensus 396 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 475 (510)
++....+..+ .+.++|+|++|.+.++. ++.+. ..+|..+++|++|++.+|+....-|..+..+ .|
T Consensus 377 ls~~IEDaa~--------~f~gl~~LrkL~l~gNq-lk~I~-----krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~L 441 (873)
T KOG4194|consen 377 LSWCIEDAAV--------AFNGLPSLRKLRLTGNQ-LKSIP-----KRAFSGLEALEHLDLGDNAIASIQPNAFEPM-EL 441 (873)
T ss_pred EEEEEecchh--------hhccchhhhheeecCce-eeecc-----hhhhccCcccceecCCCCcceeecccccccc-hh
Confidence 5544333221 25579999999998874 66654 3345689999999999997655556666666 88
Q ss_pred cEEEEcC
Q 010462 476 QKLHIRR 482 (510)
Q Consensus 476 ~~L~l~~ 482 (510)
++|.+..
T Consensus 442 k~Lv~nS 448 (873)
T KOG4194|consen 442 KELVMNS 448 (873)
T ss_pred hhhhhcc
Confidence 8888753
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-27 Score=223.84 Aligned_cols=340 Identities=18% Similarity=0.225 Sum_probs=273.5
Q ss_pred CceeEEEEEeecCCC--ccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc
Q 010462 82 TKILHLMLTLHRGAS--VPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp 159 (510)
+-||-+++.+|.... +|.... .+++++.|.|...+ ... +|..++.+.+|+.|.+. +|.+.++-
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~----qMt~~~WLkLnrt~---L~~-vPeEL~~lqkLEHLs~~-------HN~L~~vh 71 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVE----QMTQMTWLKLNRTK---LEQ-VPEELSRLQKLEHLSMA-------HNQLISVH 71 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHH----HhhheeEEEechhh---hhh-ChHHHHHHhhhhhhhhh-------hhhhHhhh
Confidence 557778888887652 555544 89999999998876 555 78889999999999999 99988888
Q ss_pred ccccccCccceEeccCCCCccc--cchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccccccccc-ccC
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEK--LPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAG-IGE 236 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~ 236 (510)
..++.++.||.+.++.|. ++. +|..+.++..|.+|||++|. +++.|..+...+++-.|++++| .+..+|.. +.+
T Consensus 72 GELs~Lp~LRsv~~R~N~-LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfin 148 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNN-LKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFIN 148 (1255)
T ss_pred hhhccchhhHHHhhhccc-cccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHh
Confidence 888889999999999888 554 78889999999999999998 9999999999999999999998 56777754 567
Q ss_pred cccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCC
Q 010462 237 LIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRR 316 (510)
Q Consensus 237 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 316 (510)
++.|-.|+++.+.... .++....|.+|+.|.+++ +.........+..+++|+.|.+++..
T Consensus 149 LtDLLfLDLS~NrLe~----LPPQ~RRL~~LqtL~Ls~----NPL~hfQLrQLPsmtsL~vLhms~Tq------------ 208 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLEM----LPPQIRRLSMLQTLKLSN----NPLNHFQLRQLPSMTSLSVLHMSNTQ------------ 208 (1255)
T ss_pred hHhHhhhccccchhhh----cCHHHHHHhhhhhhhcCC----ChhhHHHHhcCccchhhhhhhccccc------------
Confidence 7788888888776654 677788888899888876 22333445566677888888887764
Q ss_pred CCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCcccc
Q 010462 317 ENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSV 396 (510)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l 396 (510)
.....+|.++..+.+|..++++.|.... +| ..+-.+++|+.|+|++|.+.+---..+...+|+.|+++.|. +
T Consensus 209 ----RTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vP-ecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-L 280 (1255)
T KOG0444|consen 209 ----RTLDNIPTSLDDLHNLRDVDLSENNLPI--VP-ECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-L 280 (1255)
T ss_pred ----chhhcCCCchhhhhhhhhccccccCCCc--ch-HHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-h
Confidence 2446678888889999999999999888 89 88889999999999999554433336677899999999987 6
Q ss_pred EEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCc
Q 010462 397 KRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQ 476 (510)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 476 (510)
..+|..+ -.+++|+.|.+.++. |. + +.+|..++.+.+|+.+..++| +++-+|+++..|..|+
T Consensus 281 t~LP~av------------cKL~kL~kLy~n~Nk-L~---F-eGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 281 TVLPDAV------------CKLTKLTKLYANNNK-LT---F-EGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQ 342 (1255)
T ss_pred ccchHHH------------hhhHHHHHHHhccCc-cc---c-cCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHH
Confidence 6666533 378899999887764 33 2 357888899999999999888 7899999999999999
Q ss_pred EEEEcCCcc
Q 010462 477 KLHIRRCPI 485 (510)
Q Consensus 477 ~L~l~~c~~ 485 (510)
.|.++.|..
T Consensus 343 kL~L~~NrL 351 (1255)
T KOG0444|consen 343 KLKLDHNRL 351 (1255)
T ss_pred Hhcccccce
Confidence 999998864
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-23 Score=226.67 Aligned_cols=302 Identities=22% Similarity=0.245 Sum_probs=174.5
Q ss_pred CccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcc
Q 010462 110 GLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCEL 189 (510)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l 189 (510)
+||.|.+.++. ... +|..| ...+|+.|++. ++.+..+|..+..+++|++|+++++..++.+|. +..+
T Consensus 590 ~Lr~L~~~~~~---l~~-lP~~f-~~~~L~~L~L~-------~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l 656 (1153)
T PLN03210 590 KLRLLRWDKYP---LRC-MPSNF-RPENLVKLQMQ-------GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMA 656 (1153)
T ss_pred ccEEEEecCCC---CCC-CCCcC-CccCCcEEECc-------CccccccccccccCCCCCEEECCCCCCcCcCCc-cccC
Confidence 35555555543 222 33323 23455555555 555555555555555555555555444444543 4555
Q ss_pred cccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCcc-------------
Q 010462 190 YNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRAC------------- 256 (510)
Q Consensus 190 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~------------- 256 (510)
++|++|++++|..+..+|..++++++|+.|++++|..+..+|..+ .+++|+.|++.+|........
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n 735 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET 735 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCC
Confidence 555555555555455555555555555555555554455555443 344555554444322110000
Q ss_pred ---CcccccccccCCCceecCcccCCC---hhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccC
Q 010462 257 ---SLGSLKKLNLLRDCRIRGLGDVSD---AGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEAL 330 (510)
Q Consensus 257 ---~~~~l~~l~~L~~l~i~~~~~~~~---~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (510)
.++....+++|+.|.+..+..... ............++|+.|+++.|. ....+|..+
T Consensus 736 ~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~-----------------~l~~lP~si 798 (1153)
T PLN03210 736 AIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP-----------------SLVELPSSI 798 (1153)
T ss_pred ccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC-----------------CccccChhh
Confidence 001111233444444333211000 000001112234678888888775 344567778
Q ss_pred CCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccccCCCCCC
Q 010462 331 GPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDT 410 (510)
Q Consensus 331 ~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 410 (510)
..+++|+.|++++|...+. +| ... .+++|+.|++++|..+..+|.. .++|+.|+|+++. ++.+|..
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~-LP-~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~s-------- 864 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLET-LP-TGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPWW-------- 864 (1153)
T ss_pred hCCCCCCEEECCCCCCcCe-eC-CCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChHH--------
Confidence 8899999999999876554 67 333 6899999999999888777753 4689999998875 6655543
Q ss_pred CCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCC
Q 010462 411 DGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALP 466 (510)
Q Consensus 411 ~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 466 (510)
+..+++|+.|++.+|++|+.+... +..+++|+.|++++|..+..++
T Consensus 865 ----i~~l~~L~~L~L~~C~~L~~l~~~------~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 865 ----IEKFSNLSFLDMNGCNNLQRVSLN------ISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ----HhcCCCCCEEECCCCCCcCccCcc------cccccCCCeeecCCCccccccc
Confidence 347899999999999998876543 2478999999999998886543
|
syringae 6; Provisional |
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-26 Score=204.49 Aligned_cols=263 Identities=23% Similarity=0.241 Sum_probs=168.6
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
.....+.+..+.......++. .+..+.+|.++.|+ ... .|.+++.+..++.|+.+ ++.+..+|..
T Consensus 45 v~l~~lils~N~l~~l~~dl~----nL~~l~vl~~~~n~---l~~-lp~aig~l~~l~~l~vs-------~n~ls~lp~~ 109 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLK----NLACLTVLNVHDNK---LSQ-LPAAIGELEALKSLNVS-------HNKLSELPEQ 109 (565)
T ss_pred cchhhhhhccCchhhccHhhh----cccceeEEEeccch---hhh-CCHHHHHHHHHHHhhcc-------cchHhhccHH
Confidence 345556666666665555555 77888888888876 444 55567777788888887 7778888888
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
++.+..|+.|+.++|. ...+|++++.+..|+.|+..+|. +..+|.+++.+.+|..|++.+| .+..+|+..-.++.|+
T Consensus 110 i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 110 IGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLK 186 (565)
T ss_pred Hhhhhhhhhhhccccc-eeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHH
Confidence 8888888888888877 77777778888888888877777 7777777777777777777777 3445554444477777
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcch
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEED 321 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 321 (510)
+|+...+-..+ .+.+++.+.+|..|++..-.- .....|.++..|.+|++..|.
T Consensus 187 ~ld~~~N~L~t----lP~~lg~l~~L~~LyL~~Nki------~~lPef~gcs~L~Elh~g~N~----------------- 239 (565)
T KOG0472|consen 187 HLDCNSNLLET----LPPELGGLESLELLYLRRNKI------RFLPEFPGCSLLKELHVGENQ----------------- 239 (565)
T ss_pred hcccchhhhhc----CChhhcchhhhHHHHhhhccc------ccCCCCCccHHHHHHHhcccH-----------------
Confidence 77665554433 555566655555555443100 011245555666666666553
Q ss_pred hhHhhhccC-CCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCcc
Q 010462 322 EDERLLEAL-GPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMK 394 (510)
Q Consensus 322 ~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~ 394 (510)
.+.++... ..++++..|++.+|...+ +| +-+.-+++|++|++++|....-.+.++++ .|+.|.+.|++
T Consensus 240 -i~~lpae~~~~L~~l~vLDLRdNklke--~P-de~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 240 -IEMLPAEHLKHLNSLLVLDLRDNKLKE--VP-DEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred -HHhhHHHHhcccccceeeecccccccc--Cc-hHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 22333332 355666777777777666 66 66666667777777766444333346666 66666666654
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-24 Score=190.58 Aligned_cols=249 Identities=23% Similarity=0.288 Sum_probs=205.7
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.-..+..+.+++|. ...+.++ +..+..|.+|+++ ++....+|.+++.+..++.|+.+.|. +..+|..+
T Consensus 43 ~qv~l~~lils~N~---l~~l~~d-l~nL~~l~vl~~~-------~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i 110 (565)
T KOG0472|consen 43 EQVDLQKLILSHND---LEVLRED-LKNLACLTVLNVH-------DNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQI 110 (565)
T ss_pred hhcchhhhhhccCc---hhhccHh-hhcccceeEEEec-------cchhhhCCHHHHHHHHHHHhhcccch-HhhccHHH
Confidence 34557788899987 4443444 8899999999999 99999999999999999999999999 99999999
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
+.+.+|..|+.+.|. ..++|++++.+..|..|+..+| .+..+|++++.+.+|..+.+.++.... .....-+++.
T Consensus 111 ~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~----l~~~~i~m~~ 184 (565)
T KOG0472|consen 111 GSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKA----LPENHIAMKR 184 (565)
T ss_pred hhhhhhhhhhccccc-eeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhh----CCHHHHHHHH
Confidence 999999999999999 8889999999999999999888 668899999999999999888777654 3344444666
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRG 346 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (510)
|+.++... ..-+..+..++.+.+|+.|++..|. ..+.+.++.+..|++|++..|.+
T Consensus 185 L~~ld~~~-----N~L~tlP~~lg~l~~L~~LyL~~Nk-------------------i~~lPef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 185 LKHLDCNS-----NLLETLPPELGGLESLELLYLRRNK-------------------IRFLPEFPGCSLLKELHVGENQI 240 (565)
T ss_pred HHhcccch-----hhhhcCChhhcchhhhHHHHhhhcc-------------------cccCCCCCccHHHHHHHhcccHH
Confidence 66665542 2335566788889999999999986 22334788899999999999998
Q ss_pred ccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEEecc
Q 010462 347 RRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGN 401 (510)
Q Consensus 347 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~ 401 (510)
.. +|.....+++++..|++..| .++.+|. +..+.+|++|+++++. ++.+|.
T Consensus 241 ~~--lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~-is~Lp~ 292 (565)
T KOG0472|consen 241 EM--LPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNND-ISSLPY 292 (565)
T ss_pred Hh--hHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCc-cccCCc
Confidence 87 88555669999999999999 5677776 8889999999999877 665554
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.5e-22 Score=194.69 Aligned_cols=349 Identities=21% Similarity=0.215 Sum_probs=201.1
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
-++++|.+.++.+..+|..+. ..++|+.|.++.|. +.. .|.....+++|++|.|. ++....+|.+
T Consensus 45 v~L~~l~lsnn~~~~fp~~it----~l~~L~~ln~s~n~---i~~-vp~s~~~~~~l~~lnL~-------~n~l~~lP~~ 109 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISSFPIQIT----LLSHLRQLNLSRNY---IRS-VPSSCSNMRNLQYLNLK-------NNRLQSLPAS 109 (1081)
T ss_pred eeeEEeeccccccccCCchhh----hHHHHhhcccchhh---Hhh-Cchhhhhhhcchhheec-------cchhhcCchh
Confidence 347888888888887777776 88889999998887 555 66778888899999998 8888888988
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccce-----------------------------------------eccCCC
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLER-----------------------------------------LNVDHC 200 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~-----------------------------------------L~L~~~ 200 (510)
+..+++|++|++++|. ...+|..+..+..++. |+|+.|
T Consensus 110 ~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N 188 (1081)
T KOG0618|consen 110 ISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYN 188 (1081)
T ss_pred HHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccc
Confidence 8889999999999888 6666644333333333 333333
Q ss_pred CccccCchhhhc------------------------------------------cccCceeecCCCcccccccccccCcc
Q 010462 201 KNLRELPRGIGK------------------------------------------LRKLMYLHNEGTDSLRYLPAGIGELI 238 (510)
Q Consensus 201 ~~~~~lp~~~~~------------------------------------------l~~L~~L~l~~~~~~~~~p~~l~~l~ 238 (510)
... .+ .+.. -.+|++++++.+ .+..+|..++.+.
T Consensus 189 ~~~-~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp~wi~~~~ 264 (1081)
T KOG0618|consen 189 EME-VL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLPEWIGACA 264 (1081)
T ss_pred hhh-hh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchh-hhhcchHHHHhcc
Confidence 311 00 0000 113444444444 3456667777788
Q ss_pred cccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCC
Q 010462 239 RLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRREN 318 (510)
Q Consensus 239 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 318 (510)
+|..+....+.... .+..+.....|+.+.+..++- +-.+......++|+.|++..|.....+......+..
T Consensus 265 nle~l~~n~N~l~~----lp~ri~~~~~L~~l~~~~nel-----~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 265 NLEALNANHNRLVA----LPLRISRITSLVSLSAAYNEL-----EYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA 335 (1081)
T ss_pred cceEecccchhHHh----hHHHHhhhhhHHHHHhhhhhh-----hhCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence 88888777766543 444455555555554443211 111223344567777777777654443322222211
Q ss_pred cchhhHhhhccC--------CCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CCCCCcccee
Q 010462 319 EEDEDERLLEAL--------GPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKLPSLEYL 388 (510)
Q Consensus 319 ~~~~~~~~~~~l--------~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l~~L~~L 388 (510)
.-.........+ ..++.|+.|.+.+|....+.+| .+.++++|+.|+|++| .+..+|. +.+++.|++|
T Consensus 336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p--~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL 412 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP--VLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEEL 412 (1081)
T ss_pred HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh--hhccccceeeeeeccc-ccccCCHHHHhchHHhHHH
Confidence 100000000000 1124566667777766665455 4556677777777776 4455554 6667777777
Q ss_pred eccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCccccc--CC
Q 010462 389 EIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKA--LP 466 (510)
Q Consensus 389 ~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp 466 (510)
+|+||+ ++.++... ..++.|+.|...++. +.. .| .+..++.|+.++++.|. +.. +|
T Consensus 413 ~LSGNk-L~~Lp~tv------------a~~~~L~tL~ahsN~-l~~------fP-e~~~l~qL~~lDlS~N~-L~~~~l~ 470 (1081)
T KOG0618|consen 413 NLSGNK-LTTLPDTV------------ANLGRLHTLRAHSNQ-LLS------FP-ELAQLPQLKVLDLSCNN-LSEVTLP 470 (1081)
T ss_pred hcccch-hhhhhHHH------------HhhhhhHHHhhcCCc-eee------ch-hhhhcCcceEEecccch-hhhhhhh
Confidence 777766 55555332 255666666554432 222 22 23466677777776653 322 23
Q ss_pred cccCCCCCCcEEEEcCCcc
Q 010462 467 DHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 467 ~~~~~l~~L~~L~l~~c~~ 485 (510)
.... .++|++||++||++
T Consensus 471 ~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 471 EALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred hhCC-CcccceeeccCCcc
Confidence 2222 26677777777663
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-20 Score=181.74 Aligned_cols=357 Identities=21% Similarity=0.220 Sum_probs=186.5
Q ss_pred eeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccccc
Q 010462 84 ILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIE 163 (510)
Q Consensus 84 ~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~ 163 (510)
+.+|.+..|..-..|-.+ +.++-+|++|++++|. +.. +|..+..+.+|+.|+++ .|.+..+|.+++
T Consensus 23 ~~~ln~~~N~~l~~pl~~---~~~~v~L~~l~lsnn~---~~~-fp~~it~l~~L~~ln~s-------~n~i~~vp~s~~ 88 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEF---VEKRVKLKSLDLSNNQ---ISS-FPIQITLLSHLRQLNLS-------RNYIRSVPSSCS 88 (1081)
T ss_pred HHhhhccccccccCchHH---hhheeeeEEeeccccc---ccc-CCchhhhHHHHhhcccc-------hhhHhhCchhhh
Confidence 555566555544333222 2244458888888887 434 56667778888888888 888888888888
Q ss_pred ccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccc-------------
Q 010462 164 KLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYL------------- 230 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~------------- 230 (510)
++.+|++|+|.+|. +..+|.++..+++|+.|+++.|. ....|.-+..++.++.+..++|..+..+
T Consensus 89 ~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n 166 (1081)
T KOG0618|consen 89 NMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLN 166 (1081)
T ss_pred hhhcchhheeccch-hhcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhh
Confidence 88888888888887 78888888888888888888887 6667766666666666666665322222
Q ss_pred ------cccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecC
Q 010462 231 ------PAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGH 304 (510)
Q Consensus 231 ------p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 304 (510)
+.+++.++. .|++..+... ...+..+.+|+.+....... . ..--.-++|+.|+.+.|.
T Consensus 167 ~l~~~~~~~i~~l~~--~ldLr~N~~~------~~dls~~~~l~~l~c~rn~l-s-------~l~~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 167 VLGGSFLIDIYNLTH--QLDLRYNEME------VLDLSNLANLEVLHCERNQL-S-------ELEISGPSLTALYADHNP 230 (1081)
T ss_pred hcccchhcchhhhhe--eeecccchhh------hhhhhhccchhhhhhhhccc-c-------eEEecCcchheeeeccCc
Confidence 222222222 2333322221 12222333333322211000 0 000011233333333332
Q ss_pred CCCCCcccc----cCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-C
Q 010462 305 SRDGDEERA----GRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-L 379 (510)
Q Consensus 305 ~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~ 379 (510)
....+..+. ...+........+++++..+.+|+.++..+|.+.. +| .-+....+|++|.+..|. +..+|. .
T Consensus 231 l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~--lp-~ri~~~~~L~~l~~~~ne-l~yip~~l 306 (1081)
T KOG0618|consen 231 LTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVA--LP-LRISRITSLVSLSAAYNE-LEYIPPFL 306 (1081)
T ss_pred ceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHh--hH-HHHhhhhhHHHHHhhhhh-hhhCCCcc
Confidence 110000000 00000000123334444555555555555555544 44 344445555555555553 333443 5
Q ss_pred CCCCccceeeccCccccEEecccccCCCCC--------------CCCCcccccccccccccccccccccccccccccccc
Q 010462 380 GKLPSLEYLEIEGMKSVKRVGNEFLGVESD--------------TDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREI 445 (510)
Q Consensus 380 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~ 445 (510)
..+.+|+.|+|..|. +..+|..++..... ..+..-..++.|+.|.+.++. | ++.+-..+
T Consensus 307 e~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-L-----td~c~p~l 379 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH-L-----TDSCFPVL 379 (1081)
T ss_pred cccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-c-----cccchhhh
Confidence 668888888888776 55555433221110 000001123444444444432 2 22223334
Q ss_pred ccCcccceeeeccCcccccCCc-ccCCCCCCcEEEEcCCc
Q 010462 446 IIMPRLSSLTIWSCRKLKALPD-HLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 446 ~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~ 484 (510)
..+++|+.|++++| .+..+|. .+.+++.|++|+++||.
T Consensus 380 ~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNk 418 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNK 418 (1081)
T ss_pred ccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccch
Confidence 57888888888888 5677776 45678888888888884
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-16 Score=160.79 Aligned_cols=113 Identities=22% Similarity=0.189 Sum_probs=66.4
Q ss_pred CccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcc
Q 010462 110 GLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCEL 189 (510)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l 189 (510)
.-..|+++.+. +.. +|..+. ++|+.|++. +|.+..+|.. +++|++|++++|. ++.+|.. .
T Consensus 202 ~~~~LdLs~~~---Lts-LP~~l~--~~L~~L~L~-------~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p 261 (788)
T PRK15387 202 GNAVLNVGESG---LTT-LPDCLP--AHITTLVIP-------DNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---P 261 (788)
T ss_pred CCcEEEcCCCC---CCc-CCcchh--cCCCEEEcc-------CCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---c
Confidence 34566677665 333 343333 367777777 6666666642 4667777777776 6666642 3
Q ss_pred cccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeC
Q 010462 190 YNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGG 250 (510)
Q Consensus 190 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~ 250 (510)
++|+.|++++|. +..+|... .+|+.|++++| .+..+|.. .++|+.|++..+..
T Consensus 262 ~sL~~L~Ls~N~-L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~L 314 (788)
T PRK15387 262 PGLLELSIFSNP-LTHLPALP---SGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQL 314 (788)
T ss_pred cccceeeccCCc-hhhhhhch---hhcCEEECcCC-cccccccc---ccccceeECCCCcc
Confidence 566777777776 55565422 45666777776 34455542 34566666655543
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-17 Score=147.39 Aligned_cols=302 Identities=20% Similarity=0.192 Sum_probs=186.8
Q ss_pred EEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccccccc
Q 010462 87 LMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKL 165 (510)
Q Consensus 87 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l 165 (510)
+...+.+..++|..++ +....+.|..|. +..+.+.+|+.+++||+|||+ +|.|..| |+.|..+
T Consensus 51 VdCr~~GL~eVP~~LP------~~tveirLdqN~---I~~iP~~aF~~l~~LRrLdLS-------~N~Is~I~p~AF~GL 114 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP------PETVEIRLDQNQ---ISSIPPGAFKTLHRLRRLDLS-------KNNISFIAPDAFKGL 114 (498)
T ss_pred EEccCCCcccCcccCC------CcceEEEeccCC---cccCChhhccchhhhceeccc-------ccchhhcChHhhhhh
Confidence 3455566777888776 567789999998 777788999999999999999 9999999 8999999
Q ss_pred CccceEeccC-CCCccccch-hhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccc-cccCcccccc
Q 010462 166 LHLKYLSLFG-QKKIEKLPE-TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPA-GIGELIRLRS 242 (510)
Q Consensus 166 ~~L~~L~l~~-~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~ 242 (510)
..|..|-+-+ |+ ++.+|+ .|.+|..|+.|.+..|+..-.....+..|++|..|.+.+| ..+.++. .+..+..+++
T Consensus 115 ~~l~~Lvlyg~Nk-I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 115 ASLLSLVLYGNNK-ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKT 192 (498)
T ss_pred HhhhHHHhhcCCc-hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccch
Confidence 9998888877 55 999997 4788999999999999844455567899999999999998 4566665 5777888888
Q ss_pred cCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchh
Q 010462 243 VRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDE 322 (510)
Q Consensus 243 L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 322 (510)
+.+..+... ...+++.+.... ......++.........+.+.... ...
T Consensus 193 lhlA~np~i--------cdCnL~wla~~~-----------a~~~ietsgarc~~p~rl~~~Ri~-------------q~~ 240 (498)
T KOG4237|consen 193 LHLAQNPFI--------CDCNLPWLADDL-----------AMNPIETSGARCVSPYRLYYKRIN-------------QED 240 (498)
T ss_pred HhhhcCccc--------cccccchhhhHH-----------hhchhhcccceecchHHHHHHHhc-------------ccc
Confidence 877654322 112222221100 000000000000000011110000 000
Q ss_pred hHhhhccCCCCCCcc-EEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEEec
Q 010462 323 DERLLEALGPPPNLK-KLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVG 400 (510)
Q Consensus 323 ~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~ 400 (510)
...+... ...+. .+....+.... .|...|..+++|++|++++|+....-+. +..+..+++|+|..|+ ++.+.
T Consensus 241 a~kf~c~---~esl~s~~~~~d~~d~~--cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~ 314 (498)
T KOG4237|consen 241 ARKFLCS---LESLPSRLSSEDFPDSI--CPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVS 314 (498)
T ss_pred hhhhhhh---HHhHHHhhccccCcCCc--ChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHH
Confidence 0111111 11111 11112222222 5656677888888888888854443333 7778888888888776 54443
Q ss_pred ccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcc
Q 010462 401 NEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRK 461 (510)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 461 (510)
... +.++..|+.|+++++. ++...|..|..+.+|.+|.+-.||.
T Consensus 315 ~~~-----------f~~ls~L~tL~L~~N~------it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 315 SGM-----------FQGLSGLKTLSLYDNQ------ITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred HHh-----------hhccccceeeeecCCe------eEEEecccccccceeeeeehccCcc
Confidence 322 2356667777665543 3334455556666777777766654
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-15 Score=153.57 Aligned_cols=260 Identities=20% Similarity=0.182 Sum_probs=165.4
Q ss_pred eeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccccc
Q 010462 84 ILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIE 163 (510)
Q Consensus 84 ~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~ 163 (510)
-..|.+..+.+..+|..+. ++|+.|.+.+|. +.. +|. ..++|++|+++ +|.+..+|..
T Consensus 203 ~~~LdLs~~~LtsLP~~l~------~~L~~L~L~~N~---Lt~-LP~---lp~~Lk~LdLs-------~N~LtsLP~l-- 260 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP------AHITTLVIPDNN---LTS-LPA---LPPELRTLEVS-------GNQLTSLPVL-- 260 (788)
T ss_pred CcEEEcCCCCCCcCCcchh------cCCCEEEccCCc---CCC-CCC---CCCCCcEEEec-------CCccCcccCc--
Confidence 3467777777776676554 489999999998 333 343 25789999999 9999999863
Q ss_pred ccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccccc
Q 010462 164 KLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSV 243 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 243 (510)
.++|+.|++++|. +..+|... .+|+.|++++|. +..+|.. +++|++|++++| .+..+|... .+|+.|
T Consensus 261 -p~sL~~L~Ls~N~-L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp---~~L~~L 327 (788)
T PRK15387 261 -PPGLLELSIFSNP-LTHLPALP---SGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALP---SELCKL 327 (788)
T ss_pred -ccccceeeccCCc-hhhhhhch---hhcCEEECcCCc-ccccccc---ccccceeECCCC-ccccCCCCc---cccccc
Confidence 4689999999998 88888733 578899999998 8888863 478999999999 445566532 345555
Q ss_pred CcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhh
Q 010462 244 RKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDED 323 (510)
Q Consensus 244 ~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 323 (510)
.+..+.... ++.+ ..+|+.|++++|.+.
T Consensus 328 ~Ls~N~L~~--------LP~l---------------------------p~~Lq~LdLS~N~Ls----------------- 355 (788)
T PRK15387 328 WAYNNQLTS--------LPTL---------------------------PSGLQELSVSDNQLA----------------- 355 (788)
T ss_pred ccccCcccc--------cccc---------------------------ccccceEecCCCccC-----------------
Confidence 554433221 1110 124566666665411
Q ss_pred HhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccc
Q 010462 324 ERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEF 403 (510)
Q Consensus 324 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~ 403 (510)
.++. .+++|+.|++++|.+.. +| .. ..+|+.|++++|. +..+|.. .++|+.|++++|. ++.+|.
T Consensus 356 -~LP~---lp~~L~~L~Ls~N~L~~--LP-~l---~~~L~~LdLs~N~-Lt~LP~l--~s~L~~LdLS~N~-LssIP~-- 419 (788)
T PRK15387 356 -SLPT---LPSELYKLWAYNNRLTS--LP-AL---PSGLKELIVSGNR-LTSLPVL--PSELKELMVSGNR-LTSLPM-- 419 (788)
T ss_pred -CCCC---CCcccceehhhcccccc--Cc-cc---ccccceEEecCCc-ccCCCCc--ccCCCEEEccCCc-CCCCCc--
Confidence 1111 12456667777776665 66 32 3467777777774 3345432 2567777777765 443332
Q ss_pred cCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCC
Q 010462 404 LGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALP 466 (510)
Q Consensus 404 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 466 (510)
.+.+|+.|+++++. ++ .+|..+..+++|+.|++++|+.-...|
T Consensus 420 -------------l~~~L~~L~Ls~Nq-Lt------~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 420 -------------LPSGLLSLSVYRNQ-LT------RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred -------------chhhhhhhhhccCc-cc------ccChHHhhccCCCeEECCCCCCCchHH
Confidence 12356666666543 33 245555667777777777776544433
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-15 Score=153.25 Aligned_cols=94 Identities=21% Similarity=0.338 Sum_probs=49.9
Q ss_pred ceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccC
Q 010462 137 CLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKL 216 (510)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L 216 (510)
+|+.|+++ +|.+..+|..+. .+|++|++++|. ++.+|..+. .+|+.|++++|. +..+|..+. .+|
T Consensus 200 ~L~~L~Ls-------~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L 264 (754)
T PRK15370 200 QITTLILD-------NNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR-ITELPERLP--SAL 264 (754)
T ss_pred CCcEEEec-------CCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCc-cCcCChhHh--CCC
Confidence 45666666 555555555443 356666666665 555555433 356666666665 445555443 356
Q ss_pred ceeecCCCcccccccccccCcccccccCcEEE
Q 010462 217 MYLHNEGTDSLRYLPAGIGELIRLRSVRKFVV 248 (510)
Q Consensus 217 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 248 (510)
+.|++++| .+..+|..+. .+|+.|+++.+
T Consensus 265 ~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 265 QSLDLFHN-KISCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred CEEECcCC-ccCccccccC--CCCcEEECCCC
Confidence 66666655 3334554432 34555554443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-17 Score=130.85 Aligned_cols=150 Identities=28% Similarity=0.370 Sum_probs=75.9
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
+.+++|.++++.+..+|..+. .+.+|++|++.+|+ +.+ +|..+++++.||.|++. -+.+..+|..
T Consensus 33 s~ITrLtLSHNKl~~vppnia----~l~nlevln~~nnq---ie~-lp~~issl~klr~lnvg-------mnrl~~lprg 97 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIA----ELKNLEVLNLSNNQ---IEE-LPTSISSLPKLRILNVG-------MNRLNILPRG 97 (264)
T ss_pred hhhhhhhcccCceeecCCcHH----Hhhhhhhhhcccch---hhh-cChhhhhchhhhheecc-------hhhhhcCccc
Confidence 444555555555554444444 55555555555554 333 34445555555555555 4445555555
Q ss_pred ccccCccceEeccCCCCcc-ccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccc
Q 010462 162 IEKLLHLKYLSLFGQKKIE-KLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 240 (510)
|+.++.|+.|++.+|..-+ .+|..|..+..|+.|.+++|. .+.+|..++++++|+.|.+..| .+-.+|.+++.++.|
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~l 175 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRL 175 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHH
Confidence 5555555555555544211 145555555555555555554 4455555555555555555555 233445555555555
Q ss_pred cccCcEEE
Q 010462 241 RSVRKFVV 248 (510)
Q Consensus 241 ~~L~l~~~ 248 (510)
++|.+.++
T Consensus 176 relhiqgn 183 (264)
T KOG0617|consen 176 RELHIQGN 183 (264)
T ss_pred HHHhcccc
Confidence 55554443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-17 Score=130.71 Aligned_cols=151 Identities=22% Similarity=0.278 Sum_probs=133.0
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+.+.+.|.++.|+ +.- +|..+..+.+|++|+++ ++.+.++|.+++.+++|+.|+++-|+ +..+|..|
T Consensus 31 ~~s~ITrLtLSHNK---l~~-vppnia~l~nlevln~~-------nnqie~lp~~issl~klr~lnvgmnr-l~~lprgf 98 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK---LTV-VPPNIAELKNLEVLNLS-------NNQIEELPTSISSLPKLRILNVGMNR-LNILPRGF 98 (264)
T ss_pred chhhhhhhhcccCc---eee-cCCcHHHhhhhhhhhcc-------cchhhhcChhhhhchhhhheecchhh-hhcCcccc
Confidence 77888999999998 444 44459999999999999 99999999999999999999999999 89999999
Q ss_pred hcccccceeccCCCCcc-ccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccc
Q 010462 187 CELYNLERLNVDHCKNL-RELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLN 265 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 265 (510)
+.++.|++||+..|... ..+|..|..++.|+-|++++| ....+|..++++++|+.|.+..+...+ .+.+++.+.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~----lpkeig~lt 173 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS----LPKEIGDLT 173 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhh----CcHHHHHHH
Confidence 99999999999988732 468999999999999999999 558899999999999999998887665 677788888
Q ss_pred cCCCceecC
Q 010462 266 LLRDCRIRG 274 (510)
Q Consensus 266 ~L~~l~i~~ 274 (510)
+|+.|.|.+
T Consensus 174 ~lrelhiqg 182 (264)
T KOG0617|consen 174 RLRELHIQG 182 (264)
T ss_pred HHHHHhccc
Confidence 888887765
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-15 Score=157.91 Aligned_cols=326 Identities=24% Similarity=0.307 Sum_probs=222.0
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccc--ccccccc-ccccCccceEeccCCCCccccc
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNF--IKKIPTN-IEKLLHLKYLSLFGQKKIEKLP 183 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~lp~~-i~~l~~L~~L~l~~~~~~~~lp 183 (510)
.....|...+.+|.+.. .+. -..++.|+.|-+. .+. +..++.. |..++.|++|||++|.....+|
T Consensus 521 ~~~~~rr~s~~~~~~~~----~~~-~~~~~~L~tLll~-------~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEH----IAG-SSENPKLRTLLLQ-------RNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred chhheeEEEEeccchhh----ccC-CCCCCccceEEEe-------ecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 56788999999987322 222 2345579999988 664 6666544 6679999999999998899999
Q ss_pred hhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccc
Q 010462 184 ETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKK 263 (510)
Q Consensus 184 ~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 263 (510)
.+++.|-+||+|+++++. +..+|.++++|++|.+|++..+.....+|.....|.+|++|.+..... ......+.++..
T Consensus 589 ~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~-~~~~~~l~el~~ 666 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL-SNDKLLLKELEN 666 (889)
T ss_pred hHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc-ccchhhHHhhhc
Confidence 999999999999999999 899999999999999999999987777777777799999999887652 122556677777
Q ss_pred cccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEee
Q 010462 264 LNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDE 343 (510)
Q Consensus 264 l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 343 (510)
|.+|+.+.+..... .....+..+..|..+...-.. ........+..+..+.+|+.|.+.+
T Consensus 667 Le~L~~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~--------------~~~~~~~~~~~~~~l~~L~~L~i~~ 726 (889)
T KOG4658|consen 667 LEHLENLSITISSV------LLLEDLLGMTRLRSLLQSLSI--------------EGCSKRTLISSLGSLGNLEELSILD 726 (889)
T ss_pred ccchhhheeecchh------HhHhhhhhhHHHHHHhHhhhh--------------cccccceeecccccccCcceEEEEc
Confidence 77777777653221 111122223333322111110 0002234556677889999999999
Q ss_pred cCCccCCCchhHHh-----h-hhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccccCCCCCCCCCcccc
Q 010462 344 YRGRRNVVPISWFM-----S-LTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIA 417 (510)
Q Consensus 344 ~~~~~~~~p~~~~~-----~-l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 417 (510)
|...+ ....|.. . |+++..+.+.+|.....+.+....|+|+.|.+..|..++.+....-..... ......
T Consensus 727 ~~~~e--~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l--~~~i~~ 802 (889)
T KOG4658|consen 727 CGISE--IVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL--KELILP 802 (889)
T ss_pred CCCch--hhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhc--ccEEec
Confidence 99865 2212321 3 778888888899877777777778999999999999777653321111000 001235
Q ss_pred ccccccc-cccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCC
Q 010462 418 FPKLKHL-TFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRC 483 (510)
Q Consensus 418 ~~~L~~L-~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 483 (510)
|.++..+ .+.+...+..+..... .++.|+.+.+..||+++.+| .+.++.+.+|
T Consensus 803 f~~~~~l~~~~~l~~l~~i~~~~l------~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 803 FNKLEGLRMLCSLGGLPQLYWLPL------SFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred ccccccceeeecCCCCceeEeccc------CccchhheehhcCcccccCc-------cccccceecc
Confidence 6666666 4566555555443221 45668888888888776655 4555666665
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.3e-15 Score=151.27 Aligned_cols=97 Identities=21% Similarity=0.248 Sum_probs=74.9
Q ss_pred CceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhcccc
Q 010462 136 TCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRK 215 (510)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~ 215 (510)
.+..+|+++ +..+..+|..+. .+|+.|++++|. ++.+|..+. .+|++|++++|. +..+|..+. .+
T Consensus 178 ~~~~~L~L~-------~~~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~ 242 (754)
T PRK15370 178 NNKTELRLK-------ILGLTTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DT 242 (754)
T ss_pred cCceEEEeC-------CCCcCcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCc-cccCChhhh--cc
Confidence 356889998 888888887664 579999999998 888988665 589999999988 778887664 47
Q ss_pred CceeecCCCcccccccccccCcccccccCcEEEeC
Q 010462 216 LMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGG 250 (510)
Q Consensus 216 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~ 250 (510)
|+.|++++|. +..+|..+. ++|+.|++..+..
T Consensus 243 L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~L 274 (754)
T PRK15370 243 IQEMELSINR-ITELPERLP--SALQSLDLFHNKI 274 (754)
T ss_pred ccEEECcCCc-cCcCChhHh--CCCCEEECcCCcc
Confidence 9999999984 457776654 4677777765543
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5e-16 Score=140.39 Aligned_cols=280 Identities=19% Similarity=0.131 Sum_probs=191.4
Q ss_pred CCCCCceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccc
Q 010462 78 SFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKK 157 (510)
Q Consensus 78 ~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 157 (510)
...+.....|.+..|.+..+|... |+.+++||.|+|++|. +..+-|++|..++.|-.|-+.+ +|.|.+
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~a---F~~l~~LRrLdLS~N~---Is~I~p~AF~GL~~l~~Lvlyg------~NkI~~ 130 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGA---FKTLHRLRRLDLSKNN---ISFIAPDAFKGLASLLSLVLYG------NNKITD 130 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhh---ccchhhhceecccccc---hhhcChHhhhhhHhhhHHHhhc------CCchhh
Confidence 333478889999999998877654 4599999999999998 7777899999999998888771 488999
Q ss_pred ccc-cccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCch-hhhccccCceeecCCCcccc-------
Q 010462 158 IPT-NIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLR------- 228 (510)
Q Consensus 158 lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~------- 228 (510)
+|. .|+++..|+-|.+.-|+.--.....+..+++|..|.+.+|. +..++. .+..+..++.+++..|..+.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchh
Confidence 975 57789999999999998333445678999999999999998 777777 68889999999998875321
Q ss_pred -----cccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEec
Q 010462 229 -----YLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFG 303 (510)
Q Consensus 229 -----~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 303 (510)
..|..++.....+-..+....... ...-.....+..+..---..+ .. ........|..+++|+++++++|
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q--~~a~kf~c~~esl~s~~~~~d--~~-d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQ--EDARKFLCSLESLPSRLSSED--FP-DSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcc--cchhhhhhhHHhHHHhhcccc--Cc-CCcChHHHHhhcccceEeccCCC
Confidence 112222222222211111111111 000000011111111000000 00 11223345888899999999988
Q ss_pred CCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCC
Q 010462 304 HSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKL 382 (510)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l 382 (510)
. ....-..++.....+++|.|..|.+.. +....|..+.+|+.|+|++|++....|. +..+
T Consensus 285 ~-----------------i~~i~~~aFe~~a~l~eL~L~~N~l~~--v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 285 K-----------------ITRIEDGAFEGAAELQELYLTRNKLEF--VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred c-----------------cchhhhhhhcchhhhhhhhcCcchHHH--HHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 7 444555677788889999999888766 5546677889999999999977776665 7888
Q ss_pred CccceeeccCcc
Q 010462 383 PSLEYLEIEGMK 394 (510)
Q Consensus 383 ~~L~~L~L~~~~ 394 (510)
.+|.+|+|-.|+
T Consensus 346 ~~l~~l~l~~Np 357 (498)
T KOG4237|consen 346 FSLSTLNLLSNP 357 (498)
T ss_pred ceeeeeehccCc
Confidence 888888887654
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-15 Score=141.94 Aligned_cols=111 Identities=20% Similarity=0.114 Sum_probs=48.5
Q ss_pred CCCCccEEEeccCCcCccc-cchhHhhhcCCceeEEEeccccccccccccc-------cccccccccCccceEeccCCCC
Q 010462 107 GLRGLRSLLVESGEYSWSN-EILPQLFDKLTCLRALKLEVREQGLYTNFIK-------KIPTNIEKLLHLKYLSLFGQKK 178 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------~lp~~i~~l~~L~~L~l~~~~~ 178 (510)
.+++|+.|.+.++.+.... ..++..+...+.++.|+++ ++.+. .++..+.++++|++|++++|.+
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~-------~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS-------LNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecc-------ccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 4445666666655421100 0133334455555666555 33222 1233344455555555555552
Q ss_pred ccccchhhhcccc---cceeccCCCCccc----cCchhhhcc-ccCceeecCCC
Q 010462 179 IEKLPETLCELYN---LERLNVDHCKNLR----ELPRGIGKL-RKLMYLHNEGT 224 (510)
Q Consensus 179 ~~~lp~~~~~l~~---L~~L~L~~~~~~~----~lp~~~~~l-~~L~~L~l~~~ 224 (510)
....+..+..+.+ |+.|++++|.... .+...+..+ ++|+.|++++|
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC
Confidence 2233333333333 5555555554211 112223334 45555555555
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-14 Score=135.16 Aligned_cols=244 Identities=20% Similarity=0.137 Sum_probs=123.7
Q ss_pred hHhhhcCCceeEEEecccccccccccc-----ccccccccccCccceEeccCCCCccc-------cchhhhcccccceec
Q 010462 129 PQLFDKLTCLRALKLEVREQGLYTNFI-----KKIPTNIEKLLHLKYLSLFGQKKIEK-------LPETLCELYNLERLN 196 (510)
Q Consensus 129 ~~~~~~l~~L~~L~l~~~~~~~~~~~~-----~~lp~~i~~l~~L~~L~l~~~~~~~~-------lp~~~~~l~~L~~L~ 196 (510)
...|..+..|++|+++ ++.+ ..++..+...++|++|+++++. +.. ++..+..+++|+.|+
T Consensus 16 ~~~~~~l~~L~~l~l~-------~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~ 87 (319)
T cd00116 16 TELLPKLLCLQVLRLE-------GNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELD 87 (319)
T ss_pred HHHHHHHhhccEEeec-------CCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEE
Confidence 3345555666667666 5444 2344445555666666666655 331 233455566677777
Q ss_pred cCCCCccccCchhhhcccc---CceeecCCCcccc----cccccccCc-ccccccCcEEEeCccC-CccCcccccccccC
Q 010462 197 VDHCKNLRELPRGIGKLRK---LMYLHNEGTDSLR----YLPAGIGEL-IRLRSVRKFVVGGGYD-RACSLGSLKKLNLL 267 (510)
Q Consensus 197 L~~~~~~~~lp~~~~~l~~---L~~L~l~~~~~~~----~~p~~l~~l-~~L~~L~l~~~~~~~~-~~~~~~~l~~l~~L 267 (510)
+++|......+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++..+..... .......+..+.+|
T Consensus 88 l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L 167 (319)
T cd00116 88 LSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167 (319)
T ss_pred ccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence 7666643344444444444 6667666664321 122233444 5666666665554420 01122234444556
Q ss_pred CCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCc
Q 010462 268 RDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGR 347 (510)
Q Consensus 268 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 347 (510)
+.+++.++.-...........+...++|+.|++++|... +.....+...+..+++|++|++++|...
T Consensus 168 ~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~-------------~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT-------------DEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred CEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC-------------hHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 666665432211111222333444567777777666411 1122334445556677777777776654
Q ss_pred cCCCchhHHhh----hhcccceeccCccCCC----cCCC-CCCCCccceeeccCcc
Q 010462 348 RNVVPISWFMS----LTNLRFLFLFGWRNCE----HLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 348 ~~~~p~~~~~~----l~~L~~L~L~~~~~~~----~l~~-~~~l~~L~~L~L~~~~ 394 (510)
...+. ..... .+.|++|++++|.... .+.. +..+++|+++++++|.
T Consensus 235 ~~~~~-~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 235 DAGAA-ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred hHHHH-HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 31011 11122 2577777777774431 1111 4455777777777765
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-12 Score=123.22 Aligned_cols=195 Identities=26% Similarity=0.281 Sum_probs=144.5
Q ss_pred EEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccC
Q 010462 87 LMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLL 166 (510)
Q Consensus 87 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~ 166 (510)
+.+++.....+|..... -.+..-...+++.|+ ... +|..+..|..|..+.|+ .|.+..+|..++++.
T Consensus 55 l~Ls~rrlk~fpr~a~~--~~ltdt~~aDlsrNR---~~e-lp~~~~~f~~Le~liLy-------~n~~r~ip~~i~~L~ 121 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAAS--YDLTDTVFADLSRNR---FSE-LPEEACAFVSLESLILY-------HNCIRTIPEAICNLE 121 (722)
T ss_pred cccccchhhcCCCcccc--ccccchhhhhccccc---ccc-CchHHHHHHHHHHHHHH-------hccceecchhhhhhh
Confidence 34444444444433220 145555677888887 444 66668888899999999 999999999999999
Q ss_pred ccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcE
Q 010462 167 HLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKF 246 (510)
Q Consensus 167 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 246 (510)
.|.+|+|+.|+ +..+|..++.|+ |+.|-+++|+ ++.+|..++.+..|..|+.+.| .+..+|..++.+.+|+.|.+.
T Consensus 122 ~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 122 ALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred HHHHhhhccch-hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHh
Confidence 99999999999 999999888886 9999999998 9999999999999999999999 567888889999999999988
Q ss_pred EEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCC
Q 010462 247 VVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDG 308 (510)
Q Consensus 247 ~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 308 (510)
.+.... .+.++..|+ |..|+++. .++. ..+..|.+|..|+.|.+.+|.++.+
T Consensus 198 Rn~l~~----lp~El~~Lp-Li~lDfSc-Nkis----~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 198 RNHLED----LPEELCSLP-LIRLDFSC-NKIS----YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhhhh----CCHHHhCCc-eeeeeccc-Ccee----ecchhhhhhhhheeeeeccCCCCCC
Confidence 877654 555666554 55555552 2221 2344555666666666666654433
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-10 Score=97.68 Aligned_cols=126 Identities=28% Similarity=0.291 Sum_probs=43.0
Q ss_pred CCCCccEEEeccCCcCccccchhHhhh-cCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFD-KLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPET 185 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~ 185 (510)
++.+++.|++.+|.+..+.. +. .+.+|++|+++ +|.+..++ .+..+++|++|++++|. ++.++..
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-----L~~~l~~L~~L~Ls-------~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~ 82 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-----LGATLDKLEVLDLS-------NNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEG 82 (175)
T ss_dssp -------------------S-------TT-TT--EEE-T-------TS--S--T-T----TT--EEE--SS----S-CHH
T ss_pred cccccccccccccccccccc-----hhhhhcCCCEEECC-------CCCCcccc-CccChhhhhhcccCCCC-CCccccc
Confidence 45566777777776333322 33 45677777777 77777774 46667777777777777 7777554
Q ss_pred h-hcccccceeccCCCCccccCc--hhhhccccCceeecCCCccccccc----ccccCcccccccCcEEE
Q 010462 186 L-CELYNLERLNVDHCKNLRELP--RGIGKLRKLMYLHNEGTDSLRYLP----AGIGELIRLRSVRKFVV 248 (510)
Q Consensus 186 ~-~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p----~~l~~l~~L~~L~l~~~ 248 (510)
+ ..+++|+.|++++|. +..+- ..+..+++|++|++.+|+.... + ..+..+++|+.|+....
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEET
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEc
Confidence 4 357777777777776 44332 2356677777777777754321 2 23556777777775543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-11 Score=112.14 Aligned_cols=305 Identities=17% Similarity=0.152 Sum_probs=159.3
Q ss_pred ccceEeccCCCCccccc--hhhhcccccceeccCCCCccccC--chhhhccccCceeecCCCccccccc--ccccCcccc
Q 010462 167 HLKYLSLFGQKKIEKLP--ETLCELYNLERLNVDHCKNLREL--PRGIGKLRKLMYLHNEGTDSLRYLP--AGIGELIRL 240 (510)
Q Consensus 167 ~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L 240 (510)
.|+.|.++++..++.-+ ....+++++++|.+.+|..++.- -..-..+++|++|++..|..++... .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 35555555554332221 22334555555555555533321 1111235555566555553332111 112234555
Q ss_pred cccCcEEEeCccCCccCccc-ccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCc
Q 010462 241 RSVRKFVVGGGYDRACSLGS-LKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE 319 (510)
Q Consensus 241 ~~L~l~~~~~~~~~~~~~~~-l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 319 (510)
..++++++.... +..+.. ......++.+...+|..... +.....-+++..+.++++..|. ..
T Consensus 219 ~~lNlSwc~qi~--~~gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~-~l------------ 281 (483)
T KOG4341|consen 219 KYLNLSWCPQIS--GNGVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCN-QL------------ 281 (483)
T ss_pred HHhhhccCchhh--cCcchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhc-cc------------
Confidence 555555554333 111111 12233334443334433221 2222222334445555554443 10
Q ss_pred chhhHhhhccCCCCCCccEEEEeecCCccCCCchhHH-hhhhcccceeccCccCCCcCCC---CCCCCccceeeccCccc
Q 010462 320 EDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWF-MSLTNLRFLFLFGWRNCEHLPP---LGKLPSLEYLEIEGMKS 395 (510)
Q Consensus 320 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~-~~l~~L~~L~L~~~~~~~~l~~---~~~l~~L~~L~L~~~~~ 395 (510)
..+.....-..+..|+.|..+++....+ .+...+ .++.+|+.|.+..|+...+.-. -.+.+.|+.+++.+|..
T Consensus 282 --TD~~~~~i~~~c~~lq~l~~s~~t~~~d-~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 282 --TDEDLWLIACGCHALQVLCYSSCTDITD-EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred --cchHHHHHhhhhhHhhhhcccCCCCCch-HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 1112233334566788888887776543 221222 2678888888888876655432 34678888888888763
Q ss_pred cEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCccccc-CCcccCCCCC
Q 010462 396 VKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKA-LPDHLLQKTT 474 (510)
Q Consensus 396 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~ 474 (510)
+..- .+... ..++|.|+.|.+++|...+.-.+. .....-.++..|+.+.+++|+.+.+ .-+.+..+++
T Consensus 359 ~~d~--tL~sl--------s~~C~~lr~lslshce~itD~gi~-~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 359 ITDG--TLASL--------SRNCPRLRVLSLSHCELITDEGIR-HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred ehhh--hHhhh--------ccCCchhccCChhhhhhhhhhhhh-hhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 3221 11111 247889999999988765443110 0111114678899999999988754 3335667889
Q ss_pred CcEEEEcCCcchHHHhhccCCCCCCccCCCCccc
Q 010462 475 LQKLHIRRCPILEERCRKETGEDWPKIRHIPEIS 508 (510)
Q Consensus 475 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~i~~~~ 508 (510)
|+.+++.+|..+....... ..+|+|+++
T Consensus 428 Leri~l~~~q~vtk~~i~~------~~~~lp~i~ 455 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAISR------FATHLPNIK 455 (483)
T ss_pred cceeeeechhhhhhhhhHH------HHhhCccce
Confidence 9999999999887765443 245555554
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.7e-10 Score=94.94 Aligned_cols=123 Identities=25% Similarity=0.230 Sum_probs=39.5
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
.+.|.|++.++.+..+..--. .+.+|+.|++++|.+..+ +. +..++.|+.|+++ +|.+.++++.
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~----~l~~L~~L~Ls~N~I~~l----~~-l~~L~~L~~L~L~-------~N~I~~i~~~ 82 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGA----TLDKLEVLDLSNNQITKL----EG-LPGLPRLKTLDLS-------NNRISSISEG 82 (175)
T ss_dssp -----------------S--T----T-TT--EEE-TTS--S------TT-----TT--EEE---------SS---S-CHH
T ss_pred cccccccccccccccccchhh----hhcCCCEEECCCCCCccc----cC-ccChhhhhhcccC-------CCCCCccccc
Confidence 445666777766654322111 356677777777763322 22 5566777777777 7777666544
Q ss_pred cc-ccCccceEeccCCCCccccch--hhhcccccceeccCCCCccccCch----hhhccccCceeecC
Q 010462 162 IE-KLLHLKYLSLFGQKKIEKLPE--TLCELYNLERLNVDHCKNLRELPR----GIGKLRKLMYLHNE 222 (510)
Q Consensus 162 i~-~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~----~~~~l~~L~~L~l~ 222 (510)
+. .+++|+.|.+++|. +..+.. .+..+++|+.|++.+|+ +...+. .+..+|+|+.||-.
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCE
Confidence 43 46677777777776 555432 35566777777777776 433332 25566777776643
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-10 Score=103.73 Aligned_cols=88 Identities=20% Similarity=0.267 Sum_probs=50.3
Q ss_pred CCCCccEEEeccCCcC-ccccchhHhhhcCCceeEEEecccccccccccc----ccccc-------cccccCccceEecc
Q 010462 107 GLRGLRSLLVESGEYS-WSNEILPQLFDKLTCLRALKLEVREQGLYTNFI----KKIPT-------NIEKLLHLKYLSLF 174 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~lp~-------~i~~l~~L~~L~l~ 174 (510)
.+..++.+++++|.+. .....+...+.+.+.||.-+++ +-.. ..+|+ .+..+++|++|+|+
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~s-------d~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLS-------DMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehH-------hhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 6778888889988741 1222345557778888888888 3332 23333 23344566666666
Q ss_pred CCCCccccc----hhhhcccccceeccCCCC
Q 010462 175 GQKKIEKLP----ETLCELYNLERLNVDHCK 201 (510)
Q Consensus 175 ~~~~~~~lp----~~~~~l~~L~~L~L~~~~ 201 (510)
.|.+-..-+ .-+..+..|++|.|.+|.
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 665222222 223445666666666665
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-09 Score=107.25 Aligned_cols=123 Identities=32% Similarity=0.355 Sum_probs=99.4
Q ss_pred EEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccC-ccceEeccCCCCccccchhhhcccc
Q 010462 113 SLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLL-HLKYLSLFGQKKIEKLPETLCELYN 191 (510)
Q Consensus 113 ~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~-~L~~L~l~~~~~~~~lp~~~~~l~~ 191 (510)
.+....+. ... ....+..+..++.|++. ++.+.++|.....+. +|++|++++|. +..+|..+..+++
T Consensus 97 ~l~~~~~~---~~~-~~~~~~~~~~l~~L~l~-------~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~ 164 (394)
T COG4886 97 SLDLNLNR---LRS-NISELLELTNLTSLDLD-------NNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPN 164 (394)
T ss_pred eeeccccc---ccc-CchhhhcccceeEEecC-------CcccccCccccccchhhcccccccccc-hhhhhhhhhcccc
Confidence 46777765 211 12225566889999999 999999998888885 99999999999 9999888999999
Q ss_pred cceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEe
Q 010462 192 LERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVG 249 (510)
Q Consensus 192 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 249 (510)
|+.|++++|. +..+|...+.++.|+.|++++| .+..+|..++....|++|.+..+.
T Consensus 165 L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 165 LKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred ccccccCCch-hhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc
Confidence 9999999999 8889987779999999999999 567788766666667777766553
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-09 Score=101.43 Aligned_cols=158 Identities=19% Similarity=0.143 Sum_probs=91.3
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
.++|.+++.+......+.. ...+.|+++|.|+++.|=+..... +-.+...+++|+.|+++ .|.+...-++
T Consensus 121 kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls-------~Nrl~~~~~s 190 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLS-------SNRLSNFISS 190 (505)
T ss_pred HhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccc-------cccccCCccc
Confidence 5566667766655543321 123377888888888775433333 44446777888888887 6665433221
Q ss_pred c--cccCccceEeccCCCCccc--cchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccccccc--cccc
Q 010462 162 I--EKLLHLKYLSLFGQKKIEK--LPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLP--AGIG 235 (510)
Q Consensus 162 i--~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p--~~l~ 235 (510)
. ..+.+|+.|.++.|+ +.. +...+..+++|+.|+|..|..+..-.....-+..|+.|+|++|..+ .++ ..++
T Consensus 191 ~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~ 268 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVG 268 (505)
T ss_pred cchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccc
Confidence 1 236777788888777 331 2333445677888888777533332233344667777777777443 223 2355
Q ss_pred CcccccccCcEEEeCc
Q 010462 236 ELIRLRSVRKFVVGGG 251 (510)
Q Consensus 236 ~l~~L~~L~l~~~~~~ 251 (510)
.++.|..|++..+++.
T Consensus 269 ~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIA 284 (505)
T ss_pred cccchhhhhccccCcc
Confidence 5666666665555443
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.7e-10 Score=103.09 Aligned_cols=120 Identities=18% Similarity=0.127 Sum_probs=65.7
Q ss_pred cCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCc--CCCCCCCCccceeeccCccccEEecccccCC
Q 010462 329 ALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEH--LPPLGKLPSLEYLEIEGMKSVKRVGNEFLGV 406 (510)
Q Consensus 329 ~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~--l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~ 406 (510)
.+..+|+|+.|.+.+|.... .-..-...++.|+.|+|++|..... .+..+.||.|+.|+++.|. ++++..--.+.
T Consensus 217 ~~~~fPsl~~L~L~~N~~~~--~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s 293 (505)
T KOG3207|consen 217 ILLTFPSLEVLYLEANEIIL--IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVES 293 (505)
T ss_pred HHHhCCcHHHhhhhcccccc--eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccc
Confidence 34456677777777663221 1101223567777788877755442 2447777888888877765 44432111110
Q ss_pred CCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcc
Q 010462 407 ESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRK 461 (510)
Q Consensus 407 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 461 (510)
......||+|++|.+..++ ++.|..-+.+ ..+++|+.|.+..+..
T Consensus 294 -----~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l----~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 294 -----LDKTHTFPKLEYLNISENN-IRDWRSLNHL----RTLENLKHLRITLNYL 338 (505)
T ss_pred -----hhhhcccccceeeecccCc-cccccccchh----hccchhhhhhcccccc
Confidence 0113467888888877765 4444322222 3567777777766643
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-10 Score=105.55 Aligned_cols=269 Identities=17% Similarity=0.128 Sum_probs=177.8
Q ss_pred cccceeccCCCCccccCc--hhhhccccCceeecCCCccccccc--ccccCcccccccCcEEEeCccCCccCcc-ccccc
Q 010462 190 YNLERLNVDHCKNLRELP--RGIGKLRKLMYLHNEGTDSLRYLP--AGIGELIRLRSVRKFVVGGGYDRACSLG-SLKKL 264 (510)
Q Consensus 190 ~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~l 264 (510)
..|+.|.+++|.....-| ....+++++++|.+.+|..++.-. ..-..+++|+.|++..|...+ ...+. .-..+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT--~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT--DVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH--HHHHHHHHHhh
Confidence 468999999988554332 334678999999999986543211 112346788888877655443 32333 22346
Q ss_pred ccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeec
Q 010462 265 NLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEY 344 (510)
Q Consensus 265 ~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 344 (510)
++|..+++++++.+.. .....-..++..++.+...+|. +...+.+...-..+..+.++++..|
T Consensus 216 ~kL~~lNlSwc~qi~~--~gv~~~~rG~~~l~~~~~kGC~---------------e~~le~l~~~~~~~~~i~~lnl~~c 278 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISG--NGVQALQRGCKELEKLSLKGCL---------------ELELEALLKAAAYCLEILKLNLQHC 278 (483)
T ss_pred hhHHHhhhccCchhhc--CcchHHhccchhhhhhhhcccc---------------cccHHHHHHHhccChHhhccchhhh
Confidence 7788888888877654 3333445556667777666554 1123334444455667788888888
Q ss_pred CCccCCCchhHHhhhhcccceeccCccCCCcCCC---CCCCCccceeeccCccccEEecccccCCCCCCCCCcccccccc
Q 010462 345 RGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP---LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKL 421 (510)
Q Consensus 345 ~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~---~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 421 (510)
....+.-....-..+..|+.|+.++|...++.+. ..+.++|+.|.+++|..++.......+ .+.+.|
T Consensus 279 ~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~----------rn~~~L 348 (483)
T KOG4341|consen 279 NQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG----------RNCPHL 348 (483)
T ss_pred ccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh----------cCChhh
Confidence 6655311101122688999999999977665443 457899999999999977666544443 378999
Q ss_pred ccccccccccccccccccccccccccCcccceeeeccCcccccC-----CcccCCCCCCcEEEEcCCcchHHHhh
Q 010462 422 KHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKAL-----PDHLLQKTTLQKLHIRRCPILEERCR 491 (510)
Q Consensus 422 ~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-----p~~~~~l~~L~~L~l~~c~~l~~~~~ 491 (510)
+.+++..|.....-.+.. .-.++|.|++|.+++|..+++- ...-..+..|+.+.+++||.+.+...
T Consensus 349 e~l~~e~~~~~~d~tL~s----ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLAS----LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred hhhcccccceehhhhHhh----hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH
Confidence 999999886443322211 1147899999999999877654 33345578899999999999988764
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-09 Score=96.77 Aligned_cols=87 Identities=18% Similarity=0.190 Sum_probs=51.1
Q ss_pred HhhhcCCceeEEEecccccccccccccc-----ccccccccCccceEeccCCCCcc----ccchh-------hhcccccc
Q 010462 130 QLFDKLTCLRALKLEVREQGLYTNFIKK-----IPTNIEKLLHLKYLSLFGQKKIE----KLPET-------LCELYNLE 193 (510)
Q Consensus 130 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~----~lp~~-------~~~l~~L~ 193 (510)
..+..+..+..++|+ +|.++. +...+.+.++|+.-+++.-- .+ .+|.. +..+++|+
T Consensus 24 ~~~~~~~s~~~l~ls-------gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLS-------GNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred HHhcccCceEEEecc-------CCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 336677888888888 666543 34455566777777776532 22 23433 33456777
Q ss_pred eeccCCCCccccCchh----hhccccCceeecCCC
Q 010462 194 RLNVDHCKNLRELPRG----IGKLRKLMYLHNEGT 224 (510)
Q Consensus 194 ~L~L~~~~~~~~lp~~----~~~l~~L~~L~l~~~ 224 (510)
+||||+|.+-...+.. +..+..|++|++.+|
T Consensus 96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred EeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 7777777633333322 345566666666666
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-09 Score=104.46 Aligned_cols=195 Identities=23% Similarity=0.260 Sum_probs=153.7
Q ss_pred CCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccc
Q 010462 135 LTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLR 214 (510)
Q Consensus 135 l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~ 214 (510)
+..-...|++ .|+...+|..++.+..|+.+.+..|. +..+|..++++..|.+|+|+.|. +..+|..+..|
T Consensus 74 ltdt~~aDls-------rNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l- 143 (722)
T KOG0532|consen 74 LTDTVFADLS-------RNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDL- 143 (722)
T ss_pred ccchhhhhcc-------ccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCChhhhcC-
Confidence 4445567888 99999999999999999999999998 99999999999999999999999 88999988776
Q ss_pred cCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCC
Q 010462 215 KLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKS 294 (510)
Q Consensus 215 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~ 294 (510)
-|+.|-+++| .++.+|..++.+..|..|+.+.|.+.+ ....+..+..|+.+.+..-.- ...+..+. .-.
T Consensus 144 pLkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~s----lpsql~~l~slr~l~vrRn~l-----~~lp~El~-~Lp 212 (722)
T KOG0532|consen 144 PLKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQS----LPSQLGYLTSLRDLNVRRNHL-----EDLPEELC-SLP 212 (722)
T ss_pred cceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhh----chHHhhhHHHHHHHHHhhhhh-----hhCCHHHh-CCc
Confidence 5899999888 678999999988999999999888765 778888888888877764211 12223333 335
Q ss_pred CCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHh---hhhcccceeccCcc
Q 010462 295 LLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFM---SLTNLRFLFLFGWR 371 (510)
Q Consensus 295 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~---~l~~L~~L~L~~~~ 371 (510)
|..|+++.|. ...+|-.+..+..|+.|.|.+|.... -| ..++ ...-.++|++..|.
T Consensus 213 Li~lDfScNk------------------is~iPv~fr~m~~Lq~l~LenNPLqS--PP-AqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 213 LIRLDFSCNK------------------ISYLPVDFRKMRHLQVLQLENNPLQS--PP-AQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeeecccCc------------------eeecchhhhhhhhheeeeeccCCCCC--Ch-HHHHhccceeeeeeecchhcc
Confidence 7788888775 34566777888889999998888776 56 4443 34456777777773
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-08 Score=100.67 Aligned_cols=174 Identities=24% Similarity=0.274 Sum_probs=132.7
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCC-ceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLT-CLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPET 185 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~ 185 (510)
..+.++.|.+.+|. +.. ++.....+. +|+.|+++ ++.+..+|..+..+++|+.|++++|+ +..+|..
T Consensus 114 ~~~~l~~L~l~~n~---i~~-i~~~~~~~~~nL~~L~l~-------~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~ 181 (394)
T COG4886 114 ELTNLTSLDLDNNN---ITD-IPPLIGLLKSNLKELDLS-------DNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKL 181 (394)
T ss_pred cccceeEEecCCcc---ccc-Cccccccchhhccccccc-------ccchhhhhhhhhccccccccccCCch-hhhhhhh
Confidence 66789999999998 444 344355563 89999999 99999998889999999999999999 9999997
Q ss_pred hhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccc
Q 010462 186 LCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLN 265 (510)
Q Consensus 186 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 265 (510)
.+.+++|+.|++++|. +..+|..+..+..|+.|.+++|. ....+..+..+.++..+.+..+.... .+..+..+.
T Consensus 182 ~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~----~~~~~~~l~ 255 (394)
T COG4886 182 LSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLED----LPESIGNLS 255 (394)
T ss_pred hhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeee----ccchhcccc
Confidence 7799999999999998 88999877778889999999984 34555667778888877755544432 245556666
Q ss_pred cCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecC
Q 010462 266 LLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGH 304 (510)
Q Consensus 266 ~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 304 (510)
.++.+++...... . . ..+....+++.|+++++.
T Consensus 256 ~l~~L~~s~n~i~-~----i-~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 256 NLETLDLSNNQIS-S----I-SSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ccceecccccccc-c----c-ccccccCccCEEeccCcc
Confidence 6777776652221 1 1 126677899999999886
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-09 Score=94.67 Aligned_cols=129 Identities=23% Similarity=0.246 Sum_probs=98.5
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
....|+.+++++|. +.. +..+..-.+.+|+|+++ .|.+..+- .+..+++|+.|+|++|. +..+-.+-
T Consensus 282 TWq~LtelDLS~N~---I~~-iDESvKL~Pkir~L~lS-------~N~i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh 348 (490)
T KOG1259|consen 282 TWQELTELDLSGNL---ITQ-IDESVKLAPKLRRLILS-------QNRIRTVQ-NLAELPQLQLLDLSGNL-LAECVGWH 348 (490)
T ss_pred hHhhhhhccccccc---hhh-hhhhhhhccceeEEecc-------ccceeeeh-hhhhcccceEeecccch-hHhhhhhH
Confidence 56778888999987 444 44446778889999998 88877773 37788889999999988 77777766
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccc--cccccCcccccccCcEEEeCc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYL--PAGIGELIRLRSVRKFVVGGG 251 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~--p~~l~~l~~L~~L~l~~~~~~ 251 (510)
.+|-|.++|.|+.|. ++.+ ++++++-+|.+||+++|+. ..+ ...+|+++.|+++.+.++...
T Consensus 349 ~KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhcCEeeeehhhhh-Hhhh-hhhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCCcc
Confidence 778888999998887 6666 4588888889999988843 332 255888888888888776554
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.4e-09 Score=92.03 Aligned_cols=129 Identities=22% Similarity=0.219 Sum_probs=108.0
Q ss_pred hhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhh
Q 010462 132 FDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIG 211 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~ 211 (510)
+..++.|..+||+ +|.|..+-+++.-.+.+|.|++++|. +..+.. +..|++|+.|||++|. +..+-..=.
T Consensus 280 ~dTWq~LtelDLS-------~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~ 349 (490)
T KOG1259|consen 280 ADTWQELTELDLS-------GNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGNL-LAECVGWHL 349 (490)
T ss_pred cchHhhhhhcccc-------ccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccch-hHhhhhhHh
Confidence 5567889999999 99999998888889999999999999 887777 8999999999999998 766665556
Q ss_pred ccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecC
Q 010462 212 KLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRG 274 (510)
Q Consensus 212 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~ 274 (510)
++-+.+.|.+++| .+..+ .+++++-+|..|++..+.+.. -..+..+++|+.|+.+.+.+
T Consensus 350 KLGNIKtL~La~N-~iE~L-SGL~KLYSLvnLDl~~N~Ie~--ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 350 KLGNIKTLKLAQN-KIETL-SGLRKLYSLVNLDLSSNQIEE--LDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred hhcCEeeeehhhh-hHhhh-hhhHhhhhheeccccccchhh--HHHhcccccccHHHHHhhcC
Confidence 7889999999998 44444 458888899999999888775 55677788888888877765
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.5e-08 Score=99.78 Aligned_cols=103 Identities=25% Similarity=0.381 Sum_probs=83.5
Q ss_pred ceeEEEeccccccccccccc-cccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhcccc
Q 010462 137 CLRALKLEVREQGLYTNFIK-KIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRK 215 (510)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~ 215 (510)
.++.|+|+ ++.+. .+|..++++.+|++|+|++|.+.+.+|..++.+++|+.|+|++|.....+|..++++++
T Consensus 419 ~v~~L~L~-------~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 419 FIDGLGLD-------NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEEECC-------CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 47888888 77754 67888999999999999999855688988999999999999999866788999999999
Q ss_pred CceeecCCCcccccccccccCc-ccccccCcE
Q 010462 216 LMYLHNEGTDSLRYLPAGIGEL-IRLRSVRKF 246 (510)
Q Consensus 216 L~~L~l~~~~~~~~~p~~l~~l-~~L~~L~l~ 246 (510)
|++|++++|.....+|..++.+ .++..+++.
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEec
Confidence 9999999998777888877653 234444433
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-07 Score=65.18 Aligned_cols=57 Identities=26% Similarity=0.458 Sum_probs=31.3
Q ss_pred ceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccch-hhhcccccceeccCCCC
Q 010462 137 CLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCK 201 (510)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~ 201 (510)
+|++|+++ +|.+..+| ..|..+++|++|++++|. ++.+|. .|.++++|++|++++|+
T Consensus 2 ~L~~L~l~-------~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLS-------NNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEET-------SSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECC-------CCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555 55555554 344555666666666555 444432 45556666666665554
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-07 Score=97.78 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=76.4
Q ss_pred ccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcE
Q 010462 167 HLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKF 246 (510)
Q Consensus 167 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 246 (510)
.++.|+|++|.+.+.+|..++++++|+.|+|++|.....+|..++.+++|+.|++++|.....+|..++.+++|+.|++.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999667899999999999999999999667899999999999999999998878899999999999999998
Q ss_pred EEeCc
Q 010462 247 VVGGG 251 (510)
Q Consensus 247 ~~~~~ 251 (510)
.+...
T Consensus 499 ~N~l~ 503 (623)
T PLN03150 499 GNSLS 503 (623)
T ss_pred CCccc
Confidence 87765
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-08 Score=90.00 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=32.3
Q ss_pred ccceeccCCCCcccc--CchhhhccccCceeecCCCcccccccccccCcccccccCcEEE
Q 010462 191 NLERLNVDHCKNLRE--LPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVV 248 (510)
Q Consensus 191 ~L~~L~L~~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 248 (510)
.||+|||++.. ++. +-.-+..+.+|+.|.+.++..-..+...+++-.+|+.|+++.+
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 47777777655 321 2223456677777777776544444445555555555555544
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.5e-09 Score=94.05 Aligned_cols=162 Identities=14% Similarity=0.052 Sum_probs=91.2
Q ss_pred ccCceeecCCCcccc-cccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCC
Q 010462 214 RKLMYLHNEGTDSLR-YLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKK 292 (510)
Q Consensus 214 ~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~ 292 (510)
++|++||+++..... .+-.-+..+.+|+.|.+-+.... ......+.+-.+|+.++++.+.+++. .+....+.++
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld---D~I~~~iAkN~~L~~lnlsm~sG~t~--n~~~ll~~sc 259 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD---DPIVNTIAKNSNLVRLNLSMCSGFTE--NALQLLLSSC 259 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC---cHHHHHHhccccceeeccccccccch--hHHHHHHHhh
Confidence 358888888764322 22233566777887777666554 33444555556777777777766654 2334456677
Q ss_pred CCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccC--CCchhHHhhhhcccceeccCc
Q 010462 293 KSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRN--VVPISWFMSLTNLRFLFLFGW 370 (510)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~p~~~~~~l~~L~~L~L~~~ 370 (510)
+.|.+|.++||....+ ........+ -++|..|+++|+.-.-. -+. .....+++|..|+|++|
T Consensus 260 s~L~~LNlsWc~l~~~-------------~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTE-------------KVTVAVAHI--SETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDS 323 (419)
T ss_pred hhHhhcCchHhhccch-------------hhhHHHhhh--chhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccc
Confidence 7888888888761100 111111111 24677777776643210 011 22236777777777777
Q ss_pred cCCCcC-C-CCCCCCccceeeccCcccc
Q 010462 371 RNCEHL-P-PLGKLPSLEYLEIEGMKSV 396 (510)
Q Consensus 371 ~~~~~l-~-~~~~l~~L~~L~L~~~~~l 396 (510)
..+..- . .+..++.|++|.++.|..+
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcCC
Confidence 554431 1 1556777777777777643
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.7e-07 Score=62.87 Aligned_cols=58 Identities=33% Similarity=0.509 Sum_probs=31.7
Q ss_pred CccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCC
Q 010462 110 GLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQK 177 (510)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~ 177 (510)
+|++|++.+|+ +..+.+.+|..+++|++|+++ +|.+..++ ..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~---l~~i~~~~f~~l~~L~~L~l~-------~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNK---LTEIPPDSFSNLPNLETLDLS-------NNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSST---ESEECTTTTTTGTTESEEEET-------SSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCC---CCccCHHHHcCCCCCCEeEcc-------CCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555 444344455555566666665 55555552 345555556666555554
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.8e-08 Score=95.71 Aligned_cols=129 Identities=26% Similarity=0.262 Sum_probs=77.4
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+..+..+.+..|. +.. ....+..+++|..|++. ++.+..+...+..+++|++|++++|. ++.+.. +
T Consensus 70 ~l~~l~~l~l~~n~---i~~-~~~~l~~~~~l~~l~l~-------~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l 136 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL---IAK-ILNHLSKLKSLEALDLY-------DNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-L 136 (414)
T ss_pred HhHhHHhhccchhh---hhh-hhcccccccceeeeecc-------ccchhhcccchhhhhcchheeccccc-cccccc-h
Confidence 44555555555554 222 11225666777777777 77777665546667777777777777 666665 6
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCccccccccc-ccCcccccccCcEEEeCc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAG-IGELIRLRSVRKFVVGGG 251 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~ 251 (510)
..++.|+.|++.+|. +..+.. +..++.|+.+++++|.. ..+... +..+.+++.+.+..+...
T Consensus 137 ~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~l~l~~n~i-~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 137 STLTLLKELNLSGNL-ISDISG-LESLKSLKLLDLSYNRI-VDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred hhccchhhheeccCc-chhccC-CccchhhhcccCCcchh-hhhhhhhhhhccchHHHhccCCchh
Confidence 666677777777776 555543 55577777777777743 222221 345556666665554443
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2e-07 Score=91.94 Aligned_cols=125 Identities=24% Similarity=0.294 Sum_probs=95.8
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..+..+.+..+.+......+. .+.+|+.|++.+|. +.. +...+..+++|++|+++ +|.|.++ ..
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~----~~~~l~~l~l~~n~---i~~-i~~~l~~~~~L~~L~ls-------~N~I~~i-~~ 135 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLS----KLKSLEALDLYDNK---IEK-IENLLSSLVNLQVLDLS-------FNKITKL-EG 135 (414)
T ss_pred HhHHhhccchhhhhhhhcccc----cccceeeeeccccc---hhh-cccchhhhhcchheecc-------ccccccc-cc
Confidence 334444455555543223344 88999999999998 444 22226789999999999 9999988 44
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchh-hhccccCceeecCCCc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTD 225 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 225 (510)
+..+..|+.|++.+|. +..++. +..+++|+.+++++|. +..+... ...+.+|+.+++.+|.
T Consensus 136 l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 136 LSTLTLLKELNLSGNL-ISDISG-LESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred hhhccchhhheeccCc-chhccC-CccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCc
Confidence 7778889999999999 888876 7779999999999999 6656553 5788999999999984
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.6e-06 Score=75.67 Aligned_cols=93 Identities=24% Similarity=0.056 Sum_probs=48.5
Q ss_pred hccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHh-----hhhcc
Q 010462 288 ELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFM-----SLTNL 362 (510)
Q Consensus 288 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~-----~l~~L 362 (510)
.+.++.+|+.|++..|.++.. ....+...+..++.|+.|.+.+|-....... ..+. ..|+|
T Consensus 209 gl~y~~~LevLDlqDNtft~~-------------gS~~La~al~~W~~lrEL~lnDClls~~G~~-~v~~~f~e~~~p~l 274 (388)
T COG5238 209 GLFYSHSLEVLDLQDNTFTLE-------------GSRYLADALCEWNLLRELRLNDCLLSNEGVK-SVLRRFNEKFVPNL 274 (388)
T ss_pred HHHHhCcceeeeccccchhhh-------------hHHHHHHHhcccchhhhccccchhhccccHH-HHHHHhhhhcCCCc
Confidence 344566777777776653322 2233445556666677777777665442222 2222 45666
Q ss_pred cceeccCccCCCc------CCC--CCCCCccceeeccCcc
Q 010462 363 RFLFLFGWRNCEH------LPP--LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 363 ~~L~L~~~~~~~~------l~~--~~~l~~L~~L~L~~~~ 394 (510)
..|-..+|..-.. ++. -..+|-|..|.+.+|+
T Consensus 275 ~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 275 MPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred cccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 6666666633221 121 2345556666665554
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.6e-06 Score=53.62 Aligned_cols=34 Identities=38% Similarity=0.524 Sum_probs=15.0
Q ss_pred ccceEeccCCCCccccchhhhcccccceeccCCCC
Q 010462 167 HLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCK 201 (510)
Q Consensus 167 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~ 201 (510)
+|++|++++|+ ++.+|..+++|++|++|++++|+
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 34444444444 44444444444444444444444
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.5e-06 Score=52.53 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=31.4
Q ss_pred CceeEEEeccccccccccccccccccccccCccceEeccCCCCccccch
Q 010462 136 TCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPE 184 (510)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~ 184 (510)
++|++|+++ ++.+..+|..+++|++|++|++++|+ ++.++.
T Consensus 1 ~~L~~L~l~-------~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLS-------NNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEET-------SSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEcc-------CCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 468888888 88888888778888888888888888 776654
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.9e-06 Score=74.37 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=39.3
Q ss_pred ccCCCCCCccEEEEeecCCccCCCc-hhHHhhhhcccceeccCccCCCcCCC-------CCCCCccceeecc
Q 010462 328 EALGPPPNLKKLRIDEYRGRRNVVP-ISWFMSLTNLRFLFLFGWRNCEHLPP-------LGKLPSLEYLEIE 391 (510)
Q Consensus 328 ~~l~~~~~L~~L~l~~~~~~~~~~p-~~~~~~l~~L~~L~L~~~~~~~~l~~-------~~~l~~L~~L~L~ 391 (510)
.+..+++.+.-|+|..+++.. .. .+.+..|+.|..|.++++..+..+.. ++.+++++.|+=+
T Consensus 218 k~se~~p~~~~LnL~~~~ids--wasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGANNIDS--WASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ccCCCCCcchhhhhccccccc--HHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 344556666677777666432 11 13344788888888888877664432 5677888877654
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=5e-06 Score=85.79 Aligned_cols=130 Identities=28% Similarity=0.334 Sum_probs=92.4
Q ss_pred CceeEEEEEeecCCC--ccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc
Q 010462 82 TKILHLMLTLHRGAS--VPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp 159 (510)
.++++|++.+...-. .+..+. ..+|.|++|.+.+-.+ ..+.+.....++++|+.||++ ++.+..+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig---~~LPsL~sL~i~~~~~--~~~dF~~lc~sFpNL~sLDIS-------~TnI~nl- 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIG---TMLPSLRSLVISGRQF--DNDDFSQLCASFPNLRSLDIS-------GTNISNL- 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHh---hhCcccceEEecCcee--cchhHHHHhhccCccceeecC-------CCCccCc-
Confidence 678888887754321 222222 3789999999998652 112245557889999999999 8888888
Q ss_pred ccccccCccceEeccCCCCccccc--hhhhcccccceeccCCCCccccCchhh-------hccccCceeecCCCcc
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKLP--ETLCELYNLERLNVDHCKNLRELPRGI-------GKLRKLMYLHNEGTDS 226 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~~~lp~~~-------~~l~~L~~L~l~~~~~ 226 (510)
.+++++++|+.|.+++-. +..-. ..+.+|++|++||+|...... .+..+ ..||+|+.||.+++..
T Consensus 189 ~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcch
Confidence 778999999999998866 44322 347889999999999876332 22211 2488999999998744
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.8e-06 Score=67.39 Aligned_cols=84 Identities=29% Similarity=0.333 Sum_probs=52.4
Q ss_pred hhcCCceeEEEeccccccccccccccccccccc-cCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhh
Q 010462 132 FDKLTCLRALKLEVREQGLYTNFIKKIPTNIEK-LLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGI 210 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~-l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~ 210 (510)
+....+|...+|+ +|.+.++|+.|.. .+.++.|++++|. +.++|.++..++.|+.|+++.|+ +...|..+
T Consensus 49 l~~~~el~~i~ls-------~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi 119 (177)
T KOG4579|consen 49 LSKGYELTKISLS-------DNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVI 119 (177)
T ss_pred HhCCceEEEEecc-------cchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHH
Confidence 4455566666666 6666666655543 3466666666666 66666666666666666666666 55566666
Q ss_pred hccccCceeecCCC
Q 010462 211 GKLRKLMYLHNEGT 224 (510)
Q Consensus 211 ~~l~~L~~L~l~~~ 224 (510)
..|.+|..|+..+|
T Consensus 120 ~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 120 APLIKLDMLDSPEN 133 (177)
T ss_pred HHHHhHHHhcCCCC
Confidence 66666666666555
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.5e-05 Score=74.35 Aligned_cols=66 Identities=21% Similarity=0.391 Sum_probs=44.7
Q ss_pred hhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchh
Q 010462 132 FDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRG 209 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~ 209 (510)
+..+++++.|+++ +|.+..+|. + ..+|+.|.+++|..++.+|..+. ++|+.|++++|..+..+|..
T Consensus 48 ~~~~~~l~~L~Is-------~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIK-------DCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeC-------CCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc
Confidence 4556778888888 777777772 1 23577888877766777776443 47777777777556666653
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.8e-06 Score=66.36 Aligned_cols=92 Identities=16% Similarity=0.209 Sum_probs=77.9
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
...+|+..++++|. +....+.+-..++.+..|+++ +|.+.++|..+..++.|+.|+++.|. +...|..+
T Consensus 51 ~~~el~~i~ls~N~---fk~fp~kft~kf~t~t~lNl~-------~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi 119 (177)
T KOG4579|consen 51 KGYELTKISLSDNG---FKKFPKKFTIKFPTATTLNLA-------NNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVI 119 (177)
T ss_pred CCceEEEEecccch---hhhCCHHHhhccchhhhhhcc-------hhhhhhchHHHhhhHHhhhcccccCc-cccchHHH
Confidence 66788889999998 555344544667799999999 99999999999999999999999999 88889888
Q ss_pred hcccccceeccCCCCccccCchhh
Q 010462 187 CELYNLERLNVDHCKNLRELPRGI 210 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~ 210 (510)
..|.+|-.|+..++. ...+|..+
T Consensus 120 ~~L~~l~~Lds~~na-~~eid~dl 142 (177)
T KOG4579|consen 120 APLIKLDMLDSPENA-RAEIDVDL 142 (177)
T ss_pred HHHHhHHHhcCCCCc-cccCcHHH
Confidence 889999999998887 77777664
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.3e-07 Score=89.08 Aligned_cols=83 Identities=27% Similarity=0.259 Sum_probs=34.6
Q ss_pred cccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchh-hhccccCceeecCCCcccccccccccCccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPAGIGELIR 239 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 239 (510)
++.-++.|+.|+|+.|+ +.... .+..|++|++|||+.|. +..+|.- ...+ +|+.|.+++|. ++.+ .++.+|++
T Consensus 182 SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~-l~tL-~gie~Lks 255 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNA-LTTL-RGIENLKS 255 (1096)
T ss_pred HHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeecccH-HHhh-hhHHhhhh
Confidence 33334444555555544 33333 24444455555555444 4444431 1111 24444444442 1222 23444444
Q ss_pred ccccCcEEEe
Q 010462 240 LRSVRKFVVG 249 (510)
Q Consensus 240 L~~L~l~~~~ 249 (510)
|+.|+++++-
T Consensus 256 L~~LDlsyNl 265 (1096)
T KOG1859|consen 256 LYGLDLSYNL 265 (1096)
T ss_pred hhccchhHhh
Confidence 4445444443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.7e-06 Score=84.46 Aligned_cols=135 Identities=19% Similarity=0.095 Sum_probs=68.9
Q ss_pred CccceEeccCCCCccc-cchhhh-cccccceeccCCCCcc-ccCchhhhccccCceeecCCCcccccccccccCcccccc
Q 010462 166 LHLKYLSLFGQKKIEK-LPETLC-ELYNLERLNVDHCKNL-RELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRS 242 (510)
Q Consensus 166 ~~L~~L~l~~~~~~~~-lp~~~~-~l~~L~~L~L~~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 242 (510)
.+|++|+++|...+.. -|..++ .||.|+.|.+++-... +++-.-..++++|..||++++. +..+ .++++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 4566666655432211 122233 2566666666553211 1122223455666666666652 2333 45666666666
Q ss_pred cCcEEEeCccCCccCcccccccccCCCceecCcccCCCh--hhhhHhhccCCCCCCeEEEEecC
Q 010462 243 VRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDA--GEARRAELEKKKSLLKLGLHFGH 304 (510)
Q Consensus 243 L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~--~~~~~~~l~~~~~L~~L~l~~~~ 304 (510)
|.+....... ...+..+-+|++|+.|+|+.-...... .....+.-..+++|+.|+.++..
T Consensus 200 L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 6665555443 345556666777777777653332221 22233344456777777777654
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.3e-06 Score=73.55 Aligned_cols=184 Identities=16% Similarity=0.124 Sum_probs=108.2
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccc-cccCccceEeccCCCC-ccccch
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI-EKLLHLKYLSLFGQKK-IEKLPE 184 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i-~~l~~L~~L~l~~~~~-~~~lp~ 184 (510)
.+.+++.+++.+|.++...+ +...+.++|+|++|+++ .|.+...-++. ..+.+|+.|-|.++.. .+....
T Consensus 69 ~~~~v~elDL~~N~iSdWse-I~~ile~lP~l~~LNls-------~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s 140 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSE-IGAILEQLPALTTLNLS-------CNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTS 140 (418)
T ss_pred HhhhhhhhhcccchhccHHH-HHHHHhcCccceEeecc-------CCcCCCccccCcccccceEEEEEcCCCCChhhhhh
Confidence 77889999999998666655 45567899999999998 66643221222 3567899999988762 122344
Q ss_pred hhhcccccceeccCCCCccccC----------ch---hhhc-----------------cccCceeecCCCcccc-ccccc
Q 010462 185 TLCELYNLERLNVDHCKNLREL----------PR---GIGK-----------------LRKLMYLHNEGTDSLR-YLPAG 233 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~l----------p~---~~~~-----------------l~~L~~L~l~~~~~~~-~~p~~ 233 (510)
.+..++.++.|.++.|. ...+ .. .+.. .+++..+.+..|..-. .--.+
T Consensus 141 ~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~ 219 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKG 219 (418)
T ss_pred hhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhccc
Confidence 56677778888777763 1111 00 0111 2333434443332111 11123
Q ss_pred ccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCCh--hhhhHhhccCCCCCCeEEEE
Q 010462 234 IGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDA--GEARRAELEKKKSLLKLGLH 301 (510)
Q Consensus 234 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~--~~~~~~~l~~~~~L~~L~l~ 301 (510)
...++.+..|++..+.+.. ++.+..+..+++|+.+.+..++-.... .+.....++.+++++.|.-+
T Consensus 220 se~~p~~~~LnL~~~~ids--wasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNIDS--WASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCCCCcchhhhhccccccc--HHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 4456667777777776665 777788888888888777764332221 12222334556666665443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=9.8e-07 Score=87.25 Aligned_cols=125 Identities=21% Similarity=0.241 Sum_probs=96.0
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
.++..++..+|........+. -++.|++|+|+.|++ .. .. ++..|++|+.|||+ .|.+..+|.-
T Consensus 164 n~L~~a~fsyN~L~~mD~SLq----ll~ale~LnLshNk~---~~-v~-~Lr~l~~LkhLDls-------yN~L~~vp~l 227 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQ----LLPALESLNLSHNKF---TK-VD-NLRRLPKLKHLDLS-------YNCLRHVPQL 227 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHH----HHHHhhhhccchhhh---hh-hH-HHHhcccccccccc-------cchhcccccc
Confidence 667777777777665555555 789999999999983 33 22 48899999999999 8888888753
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCc--hhhhccccCceeecCCCc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELP--RGIGKLRKLMYLHNEGTD 225 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~ 225 (510)
-..-.+|+.|++++|. ++.+-. +.+|++|+.||++.|- +...- .-++.|..|+.|+|.+|.
T Consensus 228 ~~~gc~L~~L~lrnN~-l~tL~g-ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 228 SMVGCKLQLLNLRNNA-LTTLRG-IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred chhhhhheeeeecccH-HHhhhh-HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 2223459999999998 888776 8899999999999986 33211 226778899999999984
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.6e-05 Score=73.23 Aligned_cols=84 Identities=20% Similarity=0.386 Sum_probs=58.0
Q ss_pred cCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccc-cccccccccccCccceEeccCCCCccccch
Q 010462 106 KGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNF-IKKIPTNIEKLLHLKYLSLFGQKKIEKLPE 184 (510)
Q Consensus 106 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~ 184 (510)
..+.+++.|++++|. +.. +|. + -.+|+.|.++ ++. +..+|+.+ ..+|++|++++|..+..+|.
T Consensus 49 ~~~~~l~~L~Is~c~---L~s-LP~-L--P~sLtsL~Ls-------nc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKDCD---IES-LPV-L--PNELTEITIE-------NCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHhcCCCEEEeCCCC---Ccc-cCC-C--CCCCcEEEcc-------CCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 368999999999996 444 342 1 2369999998 544 66777655 36899999999955888886
Q ss_pred hhhcccccceeccCCCC--ccccCchhhh
Q 010462 185 TLCELYNLERLNVDHCK--NLRELPRGIG 211 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~--~~~~lp~~~~ 211 (510)
. |+.|++..+. .+..+|.++.
T Consensus 113 s------Le~L~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 113 S------VRSLEIKGSATDSIKNVPNGLT 135 (426)
T ss_pred c------cceEEeCCCCCcccccCcchHh
Confidence 4 5555665433 3556666543
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0001 Score=64.82 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=60.7
Q ss_pred hhcCCceeEEEecccccccccccccc-----ccccccccCccceEeccCCCCccc----cc-------hhhhccccccee
Q 010462 132 FDKLTCLRALKLEVREQGLYTNFIKK-----IPTNIEKLLHLKYLSLFGQKKIEK----LP-------ETLCELYNLERL 195 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~----lp-------~~~~~l~~L~~L 195 (510)
+..+..+..++|| +|.++. +...|.+-.+|+..+++.-. .+. +| ..+-+|++|+..
T Consensus 26 l~~~d~~~evdLS-------GNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v 97 (388)
T COG5238 26 LEMMDELVEVDLS-------GNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKV 97 (388)
T ss_pred HHhhcceeEEecc-------CCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceee
Confidence 5668899999999 887654 44556667888888887643 222 33 335678889999
Q ss_pred ccCCCCccccCchh----hhccccCceeecCCCc
Q 010462 196 NVDHCKNLRELPRG----IGKLRKLMYLHNEGTD 225 (510)
Q Consensus 196 ~L~~~~~~~~lp~~----~~~l~~L~~L~l~~~~ 225 (510)
+|++|.+-...|.. +++-+.|.+|.+++|.
T Consensus 98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred eccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 99888755555543 5567788888888873
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00014 Score=61.17 Aligned_cols=83 Identities=27% Similarity=0.283 Sum_probs=38.9
Q ss_pred hhcCCceeEEEeccccccccccccccccccccc-cCccceEeccCCCCccccch--hhhcccccceeccCCCCccccCch
Q 010462 132 FDKLTCLRALKLEVREQGLYTNFIKKIPTNIEK-LLHLKYLSLFGQKKIEKLPE--TLCELYNLERLNVDHCKNLRELPR 208 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~-l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~ 208 (510)
|..++.|..|.+. +|.|..+...+.. +++|..|.+.+|. +..+.+ .+..+++|++|.+-+|. ++..+.
T Consensus 60 lp~l~rL~tLll~-------nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~ 130 (233)
T KOG1644|consen 60 LPHLPRLHTLLLN-------NNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNP-VEHKKN 130 (233)
T ss_pred CCCccccceEEec-------CCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCc-hhcccC
Confidence 4455555555555 5555555333333 4445555555554 443322 13344555555555544 322221
Q ss_pred ----hhhccccCceeecCC
Q 010462 209 ----GIGKLRKLMYLHNEG 223 (510)
Q Consensus 209 ----~~~~l~~L~~L~l~~ 223 (510)
.+.++++|+.||..+
T Consensus 131 YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 131 YRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ceeEEEEecCcceEeehhh
Confidence 134455555555443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00011 Score=61.73 Aligned_cols=48 Identities=27% Similarity=0.345 Sum_probs=21.4
Q ss_pred ccccccccccccccCccceEeccCCCCccccchhhhc-ccccceeccCCCC
Q 010462 152 TNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCE-LYNLERLNVDHCK 201 (510)
Q Consensus 152 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~-l~~L~~L~L~~~~ 201 (510)
+|.+..++ .+..++.|.+|.+.+|. +..+...+.. +++|+.|.|.+|+
T Consensus 51 dNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 51 DNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcc
Confidence 44444432 23444555555555555 4443332322 3445555555544
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=4.8e-05 Score=77.15 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=29.6
Q ss_pred CcccceeeeccCcccccCCc-ccC-CCCCCcEEEEcCCcchHHHhh
Q 010462 448 MPRLSSLTIWSCRKLKALPD-HLL-QKTTLQKLHIRRCPILEERCR 491 (510)
Q Consensus 448 l~~L~~L~l~~c~~l~~lp~-~~~-~l~~L~~L~l~~c~~l~~~~~ 491 (510)
...++.|.+..|...+.--. ... .+..++.+++.+|+.+.....
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 34489999999976543211 111 167889999999988777654
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=6.1e-05 Score=66.33 Aligned_cols=100 Identities=26% Similarity=0.276 Sum_probs=72.5
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccch--
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPE-- 184 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-- 184 (510)
.+.+.+.|++-|+. +.++ .....|+.|+||.|+ -|.|..+ ..+..|.+|+.|.|+.|. +..+-+
T Consensus 17 dl~~vkKLNcwg~~---L~DI--sic~kMp~lEVLsLS-------vNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~ 82 (388)
T KOG2123|consen 17 DLENVKKLNCWGCG---LDDI--SICEKMPLLEVLSLS-------VNKISSL-APLQRCTRLKELYLRKNC-IESLDELE 82 (388)
T ss_pred HHHHhhhhcccCCC---ccHH--HHHHhcccceeEEee-------ccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHH
Confidence 45566777888876 4331 226788999999999 8888887 347788999999999888 777654
Q ss_pred hhhcccccceeccCCCCccccCchh-----hhccccCceee
Q 010462 185 TLCELYNLERLNVDHCKNLRELPRG-----IGKLRKLMYLH 220 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp~~-----~~~l~~L~~L~ 220 (510)
-+.++++|++|-|..|+....-+.. +..|++|+.||
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 2567888888888887755544332 55677777776
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0001 Score=74.79 Aligned_cols=112 Identities=21% Similarity=0.156 Sum_probs=55.5
Q ss_pred ccccceeccCCCCcccc--CchhhhccccCceeecCCC-ccccccc----ccccCcccccccCcEEEeCccCCccCcccc
Q 010462 189 LYNLERLNVDHCKNLRE--LPRGIGKLRKLMYLHNEGT-DSLRYLP----AGIGELIRLRSVRKFVVGGGYDRACSLGSL 261 (510)
Q Consensus 189 l~~L~~L~L~~~~~~~~--lp~~~~~l~~L~~L~l~~~-~~~~~~p----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 261 (510)
+++|+.|.+..|..+.. +-.....++.|+.|+++++ ......+ .....+.+|+.|++..+...+ ...+..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is--d~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT--DIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC--chhHHHH
Confidence 45566666665554443 2233445566666666552 1111111 122334556666665555322 2233333
Q ss_pred cc-cccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecC
Q 010462 262 KK-LNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGH 304 (510)
Q Consensus 262 ~~-l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 304 (510)
.. +++|+.+.+..+..+++ .........++.|++|+++++.
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~--~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTD--EGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred HhhCCCcceEccCCCCccch--hHHHHHHHhcCcccEEeeecCc
Confidence 22 45666666555544332 3444455567778888888775
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.00043 Score=60.79 Aligned_cols=83 Identities=25% Similarity=0.225 Sum_probs=39.3
Q ss_pred hhcCCceeEEEeccccccccccccccccccccccCccceEeccCC--CCccccchhhhcccccceeccCCCCcccc---C
Q 010462 132 FDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQ--KKIEKLPETLCELYNLERLNVDHCKNLRE---L 206 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~--~~~~~lp~~~~~l~~L~~L~L~~~~~~~~---l 206 (510)
...+..|+.|++. +..+..+ ..+-.+++|++|.++.| .....++....++++|++|++++|+ +.. +
T Consensus 39 ~d~~~~le~ls~~-------n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl 109 (260)
T KOG2739|consen 39 TDEFVELELLSVI-------NVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTL 109 (260)
T ss_pred cccccchhhhhhh-------ccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccccccc
Confidence 3344445555554 4443333 12334556666666655 3233344434445666666666655 221 1
Q ss_pred chhhhccccCceeecCCC
Q 010462 207 PRGIGKLRKLMYLHNEGT 224 (510)
Q Consensus 207 p~~~~~l~~L~~L~l~~~ 224 (510)
+. +.++.+|..|++.+|
T Consensus 110 ~p-l~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 110 RP-LKELENLKSLDLFNC 126 (260)
T ss_pred ch-hhhhcchhhhhcccC
Confidence 11 334455555555555
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.00022 Score=62.95 Aligned_cols=100 Identities=21% Similarity=0.141 Sum_probs=69.8
Q ss_pred cCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCch--hhh
Q 010462 134 KLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPR--GIG 211 (510)
Q Consensus 134 ~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~--~~~ 211 (510)
.+.+.+.|++. ++.+.++. -..+++.|++|.|+-|. ++.+.. +..|++|+.|.|+.|. +..+.. .+.
T Consensus 17 dl~~vkKLNcw-------g~~L~DIs-ic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLk 85 (388)
T KOG2123|consen 17 DLENVKKLNCW-------GCGLDDIS-ICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLK 85 (388)
T ss_pred HHHHhhhhccc-------CCCccHHH-HHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHh
Confidence 35567778887 88777763 34568899999999988 877766 8889999999998887 555432 356
Q ss_pred ccccCceeecCCCcccccccc-----cccCcccccccC
Q 010462 212 KLRKLMYLHNEGTDSLRYLPA-----GIGELIRLRSVR 244 (510)
Q Consensus 212 ~l~~L~~L~l~~~~~~~~~p~-----~l~~l~~L~~L~ 244 (510)
++++|+.|.|..|.....-+. .+.-|++|+.|+
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 788888888887754433321 234455555554
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0012 Score=58.14 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=57.0
Q ss_pred ccccccccCccceEeccCCCCccccchhhhcccccceeccCCC--CccccCchhhhccccCceeecCCCccccccccc--
Q 010462 158 IPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHC--KNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAG-- 233 (510)
Q Consensus 158 lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~--~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-- 233 (510)
+....-.+..|+.|.+.++. ++.+-. +..|++|+.|.++.| +....++.-..++++|++|++++|.. .. +..
T Consensus 35 ~~gl~d~~~~le~ls~~n~g-ltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki-~~-lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVG-LTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI-KD-LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccc-eeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc-cc-ccccc
Confidence 33333446677888887777 555444 667889999999998 54455666566779999999999853 21 222
Q ss_pred -ccCcccccccCcEEEe
Q 010462 234 -IGELIRLRSVRKFVVG 249 (510)
Q Consensus 234 -l~~l~~L~~L~l~~~~ 249 (510)
+..+.+|..|.++.|.
T Consensus 111 pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCS 127 (260)
T ss_pred hhhhhcchhhhhcccCC
Confidence 3444555555555443
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0029 Score=32.90 Aligned_cols=17 Identities=35% Similarity=0.817 Sum_probs=7.0
Q ss_pred cceEeccCCCCccccchh
Q 010462 168 LKYLSLFGQKKIEKLPET 185 (510)
Q Consensus 168 L~~L~l~~~~~~~~lp~~ 185 (510)
|++|++++|. ++.+|.+
T Consensus 2 L~~Ldls~n~-l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSS 18 (22)
T ss_dssp ESEEEETSSE-ESEEGTT
T ss_pred ccEEECCCCc-CEeCChh
Confidence 3444444443 3344433
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.027 Score=45.34 Aligned_cols=102 Identities=13% Similarity=0.243 Sum_probs=51.2
Q ss_pred ccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccc
Q 010462 105 VKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLP 183 (510)
Q Consensus 105 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp 183 (510)
|.++++|+.+.+... ...+-..+|..+..|+.+.+. ++ +..++ ..+.++..|+.+.+.. . +..++
T Consensus 8 F~~~~~l~~i~~~~~----~~~I~~~~F~~~~~l~~i~~~-------~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~ 73 (129)
T PF13306_consen 8 FYNCSNLESITFPNT----IKKIGENAFSNCTSLKSINFP-------NN-LTSIGDNAFSNCKSLESITFPN-N-LKSIG 73 (129)
T ss_dssp TTT-TT--EEEETST------EE-TTTTTT-TT-SEEEES-------ST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-
T ss_pred HhCCCCCCEEEECCC----eeEeChhhccccccccccccc-------cc-ccccceeeeecccccccccccc-c-ccccc
Confidence 347777888877643 444455567778778888876 53 55554 3455666788888865 3 44444
Q ss_pred h-hhhcccccceeccCCCCccccCch-hhhccccCceeecCC
Q 010462 184 E-TLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEG 223 (510)
Q Consensus 184 ~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~ 223 (510)
. .+..+++|+.+++..+ +..++. .+.+. +|+.+.+..
T Consensus 74 ~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 74 DNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 3 4555778888877553 333333 24444 777776654
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.0018 Score=54.64 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=30.9
Q ss_pred cccccccccccccccccccccccccccccccCcccceeeeccCcccccC-CcccCCCCCCcEEEEcCCc
Q 010462 417 AFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKAL-PDHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 417 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~c~ 484 (510)
.+++++.|.+.+|..+..+.+.... +..|+|+.|+|++|+.+++- -..+..+++|+.|++++-|
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~----~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLG----GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhc----ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 3444555555555555544443322 13455666666666555432 1133445555555555544
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.0016 Score=55.05 Aligned_cols=86 Identities=15% Similarity=0.255 Sum_probs=50.0
Q ss_pred ccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCC--CC-CCCCccceeeccCccccEEecccccCCCCCCCC
Q 010462 336 LKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLP--PL-GKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDG 412 (510)
Q Consensus 336 L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~--~~-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 412 (510)
++.++-+++.+.. ...+.+..++.++.|.+.+|....+.- .+ +-.++|+.|+|++|+.+++-+-..
T Consensus 103 IeaVDAsds~I~~--eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~--------- 171 (221)
T KOG3864|consen 103 IEAVDASDSSIMY--EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC--------- 171 (221)
T ss_pred EEEEecCCchHHH--HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH---------
Confidence 4455555554443 222334466677777777776655421 22 245788888888887666543221
Q ss_pred Cccccccccccccccccccccc
Q 010462 413 SSVIAFPKLKHLTFWVMNALEE 434 (510)
Q Consensus 413 ~~~~~~~~L~~L~l~~~~~L~~ 434 (510)
+..|++|+.|.+.+++....
T Consensus 172 --L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 172 --LLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred --HHHhhhhHHHHhcCchhhhc
Confidence 34677888888777665443
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.013 Score=30.48 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=16.4
Q ss_pred ceeEEEecccccccccccccccccccccc
Q 010462 137 CLRALKLEVREQGLYTNFIKKIPTNIEKL 165 (510)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~lp~~i~~l 165 (510)
+|++|+++ +|.+..+|.+|++|
T Consensus 1 ~L~~Ldls-------~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLS-------GNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEET-------SSEESEEGTTTTT-
T ss_pred CccEEECC-------CCcCEeCChhhcCC
Confidence 47888888 88888888776543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.0013 Score=56.67 Aligned_cols=71 Identities=17% Similarity=0.115 Sum_probs=32.4
Q ss_pred ccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCC
Q 010462 152 TNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGT 224 (510)
Q Consensus 152 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 224 (510)
.+....+-..++-+..|..|+++.+. +..+|..++.+..++.+++..|. ....|..++++++++++++.++
T Consensus 51 s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 51 SNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred hhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhhhccC
Confidence 44433333334444444444444444 44444444444444444444443 4444444444444444444444
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.001 Score=57.24 Aligned_cols=86 Identities=17% Similarity=0.160 Sum_probs=73.9
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+.+.+.|+++.|+ ... +-..|+-+..|..|+++ .+.+..+|..++.+..++.+++..|. ....|.++
T Consensus 40 ~~kr~tvld~~s~r---~vn-~~~n~s~~t~~~rl~~s-------knq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNR---LVN-LGKNFSILTRLVRLDLS-------KNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred ccceeeeehhhhhH---HHh-hccchHHHHHHHHHhcc-------HhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 78899999999997 333 33347778889999999 99999999999999999999998888 89999999
Q ss_pred hcccccceeccCCCCccc
Q 010462 187 CELYNLERLNVDHCKNLR 204 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~ 204 (510)
+.+++++.+++..+.+..
T Consensus 108 ~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred cccCCcchhhhccCcchH
Confidence 999999999999987443
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.039 Score=26.51 Aligned_cols=10 Identities=30% Similarity=0.478 Sum_probs=3.3
Q ss_pred cceEeccCCC
Q 010462 168 LKYLSLFGQK 177 (510)
Q Consensus 168 L~~L~l~~~~ 177 (510)
|+.|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3444444443
|
... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.34 Score=38.74 Aligned_cols=95 Identities=16% Similarity=0.274 Sum_probs=50.7
Q ss_pred ccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccc
Q 010462 105 VKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLP 183 (510)
Q Consensus 105 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp 183 (510)
|..+++|+.+.+..+ +..+-..+|..++.|+.+.+. + .+..++ ..+..+.+|+.+.+..+ +..++
T Consensus 31 F~~~~~l~~i~~~~~----~~~i~~~~F~~~~~l~~i~~~-------~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~ 96 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN----LTSIGDNAFSNCKSLESITFP-------N-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIG 96 (129)
T ss_dssp TTT-TT-SEEEESST----TSCE-TTTTTT-TT-EEEEET-------S-TT-EE-TTTTTT-TTECEEEETTT---BEEH
T ss_pred ccccccccccccccc----ccccceeeeeccccccccccc-------c-cccccccccccccccccccccCcc--ccEEc
Confidence 348889999999875 444455668889889999997 5 455554 45666899999999764 55555
Q ss_pred h-hhhcccccceeccCCCCccccCch-hhhccccC
Q 010462 184 E-TLCELYNLERLNVDHCKNLRELPR-GIGKLRKL 216 (510)
Q Consensus 184 ~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L 216 (510)
. .+.+. +|+.+.+..+ +..++. .+.++++|
T Consensus 97 ~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 97 SSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp TTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred hhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 4 46666 8888888753 344443 34444444
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=89.43 E-value=0.29 Score=26.44 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=7.2
Q ss_pred ccceeccCCCCccccCch
Q 010462 191 NLERLNVDHCKNLRELPR 208 (510)
Q Consensus 191 ~L~~L~L~~~~~~~~lp~ 208 (510)
+|+.|+|++|. +..+|.
T Consensus 3 ~L~~L~L~~N~-l~~lp~ 19 (26)
T smart00369 3 NLRELDLSNNQ-LSSLPP 19 (26)
T ss_pred CCCEEECCCCc-CCcCCH
Confidence 34444444443 444443
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=89.43 E-value=0.29 Score=26.44 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=7.2
Q ss_pred ccceeccCCCCccccCch
Q 010462 191 NLERLNVDHCKNLRELPR 208 (510)
Q Consensus 191 ~L~~L~L~~~~~~~~lp~ 208 (510)
+|+.|+|++|. +..+|.
T Consensus 3 ~L~~L~L~~N~-l~~lp~ 19 (26)
T smart00370 3 NLRELDLSNNQ-LSSLPP 19 (26)
T ss_pred CCCEEECCCCc-CCcCCH
Confidence 34444444443 444443
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.33 Score=26.21 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=15.3
Q ss_pred cCccceEeccCCCCccccchhh
Q 010462 165 LLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 165 l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
+.+|++|+|++|. ++.+|...
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 4577888888887 77777653
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.33 Score=26.21 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=15.3
Q ss_pred cCccceEeccCCCCccccchhh
Q 010462 165 LLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 165 l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
+.+|++|+|++|. ++.+|...
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 4577888888887 77777653
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=88.84 E-value=0.22 Score=26.96 Aligned_cols=19 Identities=16% Similarity=0.406 Sum_probs=14.7
Q ss_pred CCCCcEEEEcCCcchHHHh
Q 010462 472 KTTLQKLHIRRCPILEERC 490 (510)
Q Consensus 472 l~~L~~L~l~~c~~l~~~~ 490 (510)
+++|+.|+|++|+.+++..
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 4678888888888887764
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.16 E-value=0.029 Score=55.86 Aligned_cols=81 Identities=22% Similarity=0.182 Sum_probs=47.4
Q ss_pred eeEEEecccccccccccccc-----ccccccccCccceEeccCCCCcccc-----chhhhcc-cccceeccCCCCccc--
Q 010462 138 LRALKLEVREQGLYTNFIKK-----IPTNIEKLLHLKYLSLFGQKKIEKL-----PETLCEL-YNLERLNVDHCKNLR-- 204 (510)
Q Consensus 138 L~~L~l~~~~~~~~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~l-----p~~~~~l-~~L~~L~L~~~~~~~-- 204 (510)
+..|.|. +|.+.. +-..+....+|..|++++|. ++.. -..+... ..|++|++..|....
T Consensus 89 l~~L~L~-------~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g 160 (478)
T KOG4308|consen 89 LLHLSLA-------NNRLGDRGAEELAQALKTLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG 160 (478)
T ss_pred HHHhhhh-------hCccccchHHHHHHHhcccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhcccccccc
Confidence 6777777 555433 33455567788888888887 5521 1112222 456667777766322
Q ss_pred --cCchhhhccccCceeecCCCcc
Q 010462 205 --ELPRGIGKLRKLMYLHNEGTDS 226 (510)
Q Consensus 205 --~lp~~~~~l~~L~~L~l~~~~~ 226 (510)
.++..+.+...++.++++.|..
T Consensus 161 ~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 161 AAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred hHHHHHHHhcccchhHHHHHhccc
Confidence 2344455666777777777744
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.39 E-value=0.02 Score=57.02 Aligned_cols=107 Identities=20% Similarity=0.178 Sum_probs=53.8
Q ss_pred ccEEEeccCCcCcc-ccchhHhhhcCCceeEEEecccccccccccccc-----cccccccc-CccceEeccCCCCccc--
Q 010462 111 LRSLLVESGEYSWS-NEILPQLFDKLTCLRALKLEVREQGLYTNFIKK-----IPTNIEKL-LHLKYLSLFGQKKIEK-- 181 (510)
Q Consensus 111 L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----lp~~i~~l-~~L~~L~l~~~~~~~~-- 181 (510)
+..|.+.+|..... ...+..++.....|..|+++ .+.+.. +-..+... ..|++|++..|. ++.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~-------~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g 160 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLS-------GNNLGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEG 160 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcc-------cCCCccHhHHHHHhhcccchHHHHHHHhhccc-ccccc
Confidence 55566666653111 11134445666777777777 443321 11222222 456666666665 333
Q ss_pred ---cchhhhcccccceeccCCCCccc----cCchhhh----ccccCceeecCCCc
Q 010462 182 ---LPETLCELYNLERLNVDHCKNLR----ELPRGIG----KLRKLMYLHNEGTD 225 (510)
Q Consensus 182 ---lp~~~~~l~~L~~L~L~~~~~~~----~lp~~~~----~l~~L~~L~l~~~~ 225 (510)
+...+.....++.++++.|.... .++..+. ...++++|++.+|.
T Consensus 161 ~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~ 215 (478)
T KOG4308|consen 161 AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCG 215 (478)
T ss_pred hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcC
Confidence 33445556677777777776321 1122222 35566666666663
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 3e-19
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 128 LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLC 187
LP L L++LK+ + + + I L L+ L L G + P
Sbjct: 198 LPASIANLQNLKSLKI-------RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250
Query: 188 ELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRS 242
L+RL + C NL LP I +L +L L G +L LP+ I +L
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 7e-19
Identities = 55/270 (20%), Positives = 90/270 (33%), Gaps = 48/270 (17%)
Query: 124 SNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLP 183
+ L D L E L + + + P +L HL+++++ + +LP
Sbjct: 64 TGRALKATADLLEDATQPGRVALE--LRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELP 120
Query: 184 ETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSV 243
+T+ + LE L + LR LP I L +L L L LP +
Sbjct: 121 DTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179
Query: 244 RKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFG 303
+ L +L+ L L IR L + ++L L +
Sbjct: 180 QG------------LVNLQSLR-LEWTGIRSLPA----------SIANLQNLKSLKIR-- 214
Query: 304 HSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLR 363
+ L A+ P L++L + RN P F L+
Sbjct: 215 -------------NS---PLSALGPAIHHLPKLEELDLRGCTALRN-YP-PIFGGRAPLK 256
Query: 364 FLFLFGWRNCEHLPP-LGKLPSLEYLEIEG 392
L L N LP + +L LE L++ G
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 6e-15
Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 9/107 (8%)
Query: 128 LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLC 187
L L L L L ++ P LK L L + LP +
Sbjct: 221 LGPAIHHLPKLEELDLR------GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274
Query: 188 ELYNLERLNVDHCKNLRELPRGIGKLRKLMYL---HNEGTDSLRYLP 231
L LE+L++ C NL LP I +L + + ++ P
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 53/277 (19%), Positives = 91/277 (32%), Gaps = 76/277 (27%)
Query: 128 LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLC 187
P +L+ L+ + + + ++P +++ L+ L+L + LP ++
Sbjct: 96 FPDQAFRLSHLQHMTI-------DAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIA 147
Query: 188 ELYNLERLNVDHCKNLRELPRGIGK---------LRKLMYLHNEGTDSLRYLPAGIGELI 238
L L L++ C L ELP + L L L E T +R LPA I L
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQ 206
Query: 239 RLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKL 298
+LK L +R+ + LG + L +L
Sbjct: 207 ---------------------NLKSLK-IRNSPLSALGP----------AIHHLPKLEEL 234
Query: 299 GLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRN---VVPISW 355
L + G LK+L + + + +P+
Sbjct: 235 DLRGCTAL-----------------RNYPPIFGGRAPLKRLILKDC----SNLLTLPLD- 272
Query: 356 FMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIE 391
LT L L L G N LP + +LP+ + +
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 4e-11
Identities = 58/372 (15%), Positives = 94/372 (25%), Gaps = 115/372 (30%)
Query: 128 LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKL--LHLKYLSLFGQKKIEKLPET 185
L D L+ + N + + + + + + ++ +
Sbjct: 25 LRPYHDVLSQWQRH----------YNADRNRWHSAWRQANSNNPQIETRTGRALKATADL 74
Query: 186 L--CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSV 243
L L + L + P +L L ++ + L LP + +
Sbjct: 75 LEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFA----- 127
Query: 244 RKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFG 303
L+ L L +R L + L +L +
Sbjct: 128 ----------------GLETLTL-ARNPLRALPA----------SIASLNRLRELSIR-- 158
Query: 304 HSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLR 363
L L P L L NL+
Sbjct: 159 -------------------ACPELTEL--PEPLASTDASGEHQ-----------GLVNLQ 186
Query: 364 FLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPK-L 421
L L W LP + L +L+ L+I S + A +
Sbjct: 187 SLRL-EWTGIRSLPASIANLQNLKSLKI--------------------RNSPLSALGPAI 225
Query: 422 KHLTFWVMNALEELDFE-----TAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQ 476
HL LEELD L L + C L LP + + T L+
Sbjct: 226 HHLP-----KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280
Query: 477 KLHIRRCPILEE 488
KL +R C L
Sbjct: 281 KLDLRGCVNLSR 292
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 5e-15
Identities = 62/489 (12%), Positives = 124/489 (25%), Gaps = 136/489 (27%)
Query: 74 STISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFD 133
+ FG+ ++ M + + + L + + + E+ P D
Sbjct: 361 VSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420
Query: 134 KLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFG------------------ 175
L+ ++ G TN I I I++L L+ +
Sbjct: 421 SRISLKDTQI-----GNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475
Query: 176 -QKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYL---HNEGTDSLRYLP 231
K+ E + L +L + + +C N+ +LP + L +L L N
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN----RGISAA 531
Query: 232 AGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEK 291
+ RL + ++ + + A L+K
Sbjct: 532 QLKADWTRLADD-----------EDTGPKIQIFY-MGYNNLEEFPA--------SASLQK 571
Query: 292 KKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERL--LEALGPPPNLKKLRIDEYRGRRN 349
L L N ++ LEA G L L++D N
Sbjct: 572 MVKLGLLDCVH---------------N------KVRHLEAFGTNVKLTDLKLD-----YN 605
Query: 350 ---VVPISWFMSLTNLRFLFL-----------FGWRNCEHL------------------- 376
+P + + L F ++ +
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665
Query: 377 -PPLGKLPSLEYL-------------EIEGMKSVKRV---GNEFLGVESDTDGSSVIAFP 419
K + + + + N + ++ +
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725
Query: 420 KLKHLTFWVM--NALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQK 477
LT + N L L + +P LS++ + + P L + L+
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATT----LPYLSNMDVSYNC-FSSFPTQPLNSSQLKA 780
Query: 478 LHIRRCPIL 486
IR
Sbjct: 781 FGIRHQRDA 789
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 4e-08
Identities = 68/504 (13%), Positives = 151/504 (29%), Gaps = 63/504 (12%)
Query: 2 AQDYLSEKGPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCSN 61
A +YL + + + + YK E + + +
Sbjct: 147 AGEYLFSNIRYVDVTVMNSFNRVTTELKGMKVTYKEDSKEHQNPDNANDKYMDIGVATCD 206
Query: 62 GCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDN-VKGLRGLRSLLVESGE 120
+ + + + +++ ++ I L + DN + + L E+ E
Sbjct: 207 SAVWLPAGTYQVVAYTTYSQSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAE 266
Query: 121 YSWSNEILPQLFDKL----------TCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLK 169
Y + L +++ L T + + P +++ +
Sbjct: 267 YIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVT 326
Query: 170 YLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIG--KLRKLMYLHNEGTDSL 227
LSL G ++P+ + +L L+ L+ + R G +L M + +
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTPDMSEERKHRIRM 385
Query: 228 RYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRA 287
Y + RL ++ +R + +KK + + + +G++++
Sbjct: 386 HYKKMFLDYDQRLNLSD--LLQDAINRNPEMKPIKKDSRI-SLKDTQIGNLTNRITFISK 442
Query: 288 ELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGR 347
+++ L + + +Y +
Sbjct: 443 AIQRLTKLQIIYFANSP----------------------FTYD-NIAVDWEDANSDYAKQ 479
Query: 348 RNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGV 406
+S + +L +L + L+ N LP L LP L+ L I N +
Sbjct: 480 YENEELS-WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA--------CNRGISA 530
Query: 407 ESDTDGSSVIA-----FPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRK 461
+ +A PK++ N LEE ++++ M +L L K
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMG-YNNLEEFPASASLQK----MVKLGLLDCVHN-K 584
Query: 462 LKALPDHLLQKTTLQKLHIRRCPI 485
++ L L L + I
Sbjct: 585 VRHLEA-FGTNVKLTDLKLDYNQI 607
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 8e-08
Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 23/124 (18%)
Query: 122 SWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIE--KLLHLKYLSLFGQKKI 179
S + + L + L N + + + L +L + +
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDL-------RFNKLTSLSDDFRATTLPYLSNMDV-SYNCF 765
Query: 180 EKLPETLCELYNLERLNVDHCKNL------RELPRGIGKLRKLMYL---HNEGTDSLRYL 230
P L+ + H ++ R+ P GI L+ L N+ +R +
Sbjct: 766 SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND----IRKV 821
Query: 231 PAGI 234
+
Sbjct: 822 DEKL 825
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 124 SNEI--LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEK 181
N P + L+A + + +++ PT I L L + G I K
Sbjct: 762 YNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI-GSNDIRK 820
Query: 182 LPETLCELYNLERLNVDHCKNLR-ELPRGIGKLRKLMYL 219
+ E L L L++ N+ ++ + MY+
Sbjct: 821 VDEKLTP--QLYILDIADNPNISIDVTSVCPYIEAGMYV 857
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 7e-10
Identities = 44/399 (11%), Positives = 102/399 (25%), Gaps = 98/399 (24%)
Query: 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLL 166
G +G+ + + + + D L ++ K I + L
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI-KDCINSDPQQKSIKKSSRITL 183
Query: 167 HLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDS 226
+ I + + + L L + + + + E + Y T
Sbjct: 184 KDTQIGQLSNN-ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-- 240
Query: 227 LRYLPAGIGELIRLRSVR-----------KFVVGGGYDRACSLGSLKKLNLLRDCRIRGL 275
L L V F+ +L ++ +N+ R
Sbjct: 241 ---EDLKWDNLKDLTDVEVYNCPNLTKLPTFL--------KALPEMQLINV-ACNRGISG 288
Query: 276 GDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPN 335
+ D + A+ + + + + N L+ +
Sbjct: 289 EQLKDDWQ-ALADAPVGEKIQIIYIG---------------YNN-------LKTFPVETS 325
Query: 336 LKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNC--EHLPPLGKLPSLEYLEIEGM 393
L+K+ L L N LP G L L +
Sbjct: 326 LQKM--------------------KKLGMLEC--LYNQLEGKLPAFGSEIKLASLNLA-- 361
Query: 394 KSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSS 453
N+ + ++ G + ++++L+F N L+ + K + +S+
Sbjct: 362 ------YNQITEIPANFCGFT----EQVENLSFA-HNKLKYIPNIFDAKS----VSVMSA 406
Query: 454 L-------TIWSCRKLKALPDHLLQKTTLQKLHIRRCPI 485
+ + L + + +++ I
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 7e-10
Identities = 41/372 (11%), Positives = 102/372 (27%), Gaps = 100/372 (26%)
Query: 138 LRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNV 197
+ L+ + G +N I + + +L L+ + + + E N E
Sbjct: 178 SSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ- 236
Query: 198 DHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACS 257
+ L+ L + +L LP + +
Sbjct: 237 ----QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK---------------------A 271
Query: 258 LGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERA-GRR 316
L ++ +N+ R + D + A+ + + + + + + + E + +
Sbjct: 272 LPEMQLINV-ACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329
Query: 317 ENEEDEDERLLEAL--------GPPP---NLKKL--------RIDEYRGRRNVVPISWFM 357
+ L L G P + KL +I E +P ++
Sbjct: 330 KK--------LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-------IPANFCG 374
Query: 358 SLTNLRFLFLFGWRNC-EHLPP---LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGS 413
+ L N +++P + + ++ NE V+
Sbjct: 375 FTEQVENLSF--AHNKLKYIPNIFDAKSVSVMSAIDFS--------YNEIGSVDGKNFDP 424
Query: 414 SVIAFPKLKHLT----------------FWVMNALEELDFE----TAIKREIIIMPRLSS 453
K +++ F + L ++ T I + + + +
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL---KDEN 481
Query: 454 LTIWSCRKLKAL 465
+ L ++
Sbjct: 482 ENFKNTYLLTSI 493
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 6e-09
Identities = 49/412 (11%), Positives = 111/412 (26%), Gaps = 114/412 (27%)
Query: 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLL 166
+ E+ EY+ + +D L L +++ + K+PT ++ L
Sbjct: 220 AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV------YNCPNLTKLPTFLKALP 273
Query: 167 HLKYLSLFG--------QKKIEKLPETLCELYNLERLNVDHCKNLREL--PRGIGKLRKL 216
++ +++ K + ++ + + + NL+ + K++KL
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKL 332
Query: 217 MYL---HNEGTDSLRYLPAGIGELI----------RLRSVRKFVVGGGYDRACSLGSLKK 263
L +N L G I ++ + G ++
Sbjct: 333 GMLECLYN----QLEGKLPAFGSEIKLASLNLAYNQITEIPANFCG-------FTEQVEN 381
Query: 264 LNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDED 323
L+ +++ + ++ DA + + + NE
Sbjct: 382 LSF-AHNKLKYIPNIFDAK--------SVSVMSAIDFSY---------------NE---- 413
Query: 324 ERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNC-EHLPP--LG 380
+ ++ N L + F N+ + L N P
Sbjct: 414 ---IGSV-DGKNFDPL------------DPTPF-KGINVSSINLSN--NQISKFPKELFS 454
Query: 381 KLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFE-- 438
L + + G N + ++ F L +D
Sbjct: 455 TGSPLSSINLMG--------NMLTEIPKNSLKDENENFKNTYLL--------TSIDLRFN 498
Query: 439 --TAIKREIII--MPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPIL 486
T + + +P L + + P L +TL+ IR
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDA 549
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 58/513 (11%), Positives = 128/513 (24%), Gaps = 160/513 (31%)
Query: 74 STISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEI--LPQL 131
+ + L+ I + + + SN I + +
Sbjct: 148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQ------LSNNITFVSKA 201
Query: 132 FDKLTCLRALKL--------EVREQGL-----YTNFIKKIPTNIEKLLHLKYLSLFGQKK 178
+LT LR + + E Y K + L L + ++
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261
Query: 179 IEKLPETLCELYNLERLNVDH---------------------CKNLREL----------- 206
+ KLP L L ++ +NV + ++ +
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321
Query: 207 -PRGIGKLRKLMYL---HNEGTDSLRYLPAGIGELIRLR----------SVRKFVVGGGY 252
+ K++KL L +N L G I+L + G
Sbjct: 322 VETSLQKMKKLGMLECLYN----QLEGKLPAFGSEIKLASLNLAYNQITEIPANFCG--- 374
Query: 253 DRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEER 312
++ L+ +++ + ++ DA + + +
Sbjct: 375 ----FTEQVENLS-FAHNKLKYIPNIFDAK--------SVSVMSAIDFSY---------- 411
Query: 313 AGRRENE-----EDEDERLLEALGPPPNLKKLRIDEYRGRRN---VVPISWFMSLTNLRF 364
NE + L N+ + + N P F + + L
Sbjct: 412 -----NEIGSVDGKNFDPLDPTPFKGINVSSINLS-----NNQISKFPKELFSTGSPLSS 461
Query: 365 LFL-------FGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVI 416
+ L + + L +++ N+ + D ++
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR--------FNKLTKLSDDFRATT-- 511
Query: 417 AFPKLKHL------------TFWVMNALEELD-----------FETAIKREIIIMPRLSS 453
P L + + L+ I + P L+
Sbjct: 512 -LPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570
Query: 454 LTIWSCRKLKALPDHLLQKTTLQKLHIRRCPIL 486
L I S ++ + + + + L I+ P +
Sbjct: 571 LQIGSND-IRKVNEKITPN--ISVLDIKDNPNI 600
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 5/99 (5%)
Query: 124 SNEI--LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEK 181
N P + L+ + + +++ P I L L + G I K
Sbjct: 522 YNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI-GSNDIRK 580
Query: 182 LPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLH 220
+ E + N+ L++ N+ + +
Sbjct: 581 VNEKITP--NISVLDIKDNPNISIDLSYVCPYIEAGMYM 617
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 43/358 (12%), Positives = 97/358 (27%), Gaps = 81/358 (22%)
Query: 132 FDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSL----FGQKKIEKLPETLC 187
+ + L LE ++P I +L L+ L+L + P+ +
Sbjct: 77 LNSNGRVTGLSLE------GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGIS 130
Query: 188 ELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFV 247
+ E+ + + + + + I + R+
Sbjct: 131 ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC--INSDPQQKSIKKSSRITL----- 183
Query: 248 VGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRD 307
++ L I + + + L + +
Sbjct: 184 ------------KDTQIGQL-SNNITFV----------SKAVMRLTKLRQFYMGNSP--- 217
Query: 308 GDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFL 367
A + EY + + W +L +L + +
Sbjct: 218 -------------------FVAENICEAWENENS-EYAQQYKTEDLKWD-NLKDLTDVEV 256
Query: 368 FGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIA-FPKLKHLT 425
+ N LP L LP ++ + + N + E D +A P + +
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVA--------CNRGISGEQLKDDWQALADAPVGEKIQ 308
Query: 426 FWVM--NALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIR 481
+ N L+ ET++++ M +L L +L+ + L L++
Sbjct: 309 IIYIGYNNLKTFPVETSLQK----MKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLA 361
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 1e-09
Identities = 82/546 (15%), Positives = 149/546 (27%), Gaps = 182/546 (33%)
Query: 40 GEI-YKCKMHDIVHDFAQYLCSN-GCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASV 97
GE Y+ K DI+ F N C V+ S + +I H++
Sbjct: 12 GEHQYQYK--DILSVFEDAFVDNFDCKDVQ-----DMPKSILSKEEIDHII-------MS 57
Query: 98 PIPIWDNVKGLRGLRSLLVESGE--------------YSWSNEIL--------------- 128
D V G L L+ E Y + +
Sbjct: 58 K----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 129 ---------PQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKI 179
Q+F K R Q L +L K + + G
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL------------ELRPAKNVLIDGVLGS 161
Query: 180 EK--LPETLCELYNLER--------LNVDHCKNLRELPRGIGKL-RKLMYLHNEGTDSLR 228
K + +C Y ++ LN+ +C + + + KL ++ +D
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 229 YLPAGIGELIRLRSVRKFVVGGGYDRA-------CSLGSLKKLNLLRDCRI------RGL 275
+ I + +R+ + Y+ + + NL C+I + +
Sbjct: 222 NIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL--SCKILLTTRFKQV 277
Query: 276 GDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPN 335
D A L+ L DE + LL
Sbjct: 278 TDFLSAATTTHISLDHHSMTL----------------------TPDEVKSLL-------- 307
Query: 336 LKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFG------------WR--NCEHLPPLGK 381
LK L R V+ N R L + W+ NC+ L + +
Sbjct: 308 LKYLDCRPQDLPREVLTT-------NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 382 LPSLEYLEIEGMKSVKRVGNEF--LGVESDTDGSSVIAFPKLKHLTFWVMNAL-EELDFE 438
SL LE + + F L V FP H+ +++ + ++
Sbjct: 361 S-SLNVLEPAEYRKM------FDRLSV-----------FPPSAHIPTILLSLIWFDVIKS 402
Query: 439 TAIKREIII--MPRLSSLTIWSCRKLKALPDHLL----QKTTLQKLHIRRCPILEERCRK 492
+++ + + S + ++P L + LH I++
Sbjct: 403 DV---MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS---IVDHYNIP 456
Query: 493 ETGEDW 498
+T +
Sbjct: 457 KTFDSD 462
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 5e-06
Identities = 60/416 (14%), Positives = 112/416 (26%), Gaps = 130/416 (31%)
Query: 14 MGDIGEEYFNILASRSFFQDFYKGYGGEIY-----KCKMHDIVHDFAQYLC----SNGCL 64
+ G+ + + S+ +I+ C + V + Q L N
Sbjct: 158 VLGSGKTWVALDVCLSY--KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 65 TVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWS 124
+ S + I S L + + + NV +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---VLLNV-----------------QN 255
Query: 125 NEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKY-------LSLFGQK 177
+ F+ L+C + L L R + + T+F+ T L H SL +
Sbjct: 256 AKAW-NAFN-LSC-KIL-LTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 178 ---KIEKLPETLCELYNL------ERL--NVDHCKNLRELPRGIGKLRKLMYLHNEGTDS 226
+ + LP + E + + N + + KL ++ S
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--NCDKLTTII------ESS 362
Query: 227 LRYL-PAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRD---------CRIRGLG 276
L L PA E R +L++ I
Sbjct: 363 LNVLEPA---EY----------------RKM----FDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 277 DVSDAGE-----ARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALG 331
SD + + +EK+ + + E + ENE +++
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIP-----SIYLELKVKLENEYALHRSIVDHYN 454
Query: 332 PP-----PNLKKLRIDEYRGRRNVVPISWFMS--LTN---------LRFLFL-FGW 370
P +L +D+Y + L N R +FL F +
Sbjct: 455 IPKTFDSDDLIPPYLDQY--------FYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 52/288 (18%), Positives = 92/288 (31%), Gaps = 60/288 (20%)
Query: 54 FAQYL-CSNGCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIWDNVK--GLRG 110
+YL C L E+ + +S E+ + G + WDN K
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAES--------IRDGLA----TWDNWKHVNCDK 354
Query: 111 LRSLLVESGEYSWSNEILPQLFDKLTCLR------ALKLEVREQGLYTNFIKKIPTNIEK 164
L +++ S E ++FD+L+ + L + ++ + IK +
Sbjct: 355 LTTIIESSLNVLEPAE-YRKMFDRLSVFPPSAHIPTILLSL----IWFDVIKSDVMVVVN 409
Query: 165 LLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIG---KLRKLMYLHN 221
LH KY + Q K E+ + ++ +N L R I + K +
Sbjct: 410 KLH-KYSLVEKQPK-----ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 222 EGTDSLR-YLPAGIG------------ELIR-----LRSVRKFVVGGGYDRACSLGSLKK 263
L Y + IG L R R + + + S GS+
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS-GSI-- 520
Query: 264 LNLLRDCRI--RGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGD 309
LN L+ + + D E + L K+ + S+ D
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAIL--DFLPKIEENLICSKYTD 566
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 5e-09
Identities = 38/177 (21%), Positives = 57/177 (32%), Gaps = 49/177 (27%)
Query: 108 LRGLRSLLVESGEYSWSNEI--LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKL 165
GL L + N++ LP L L L + N + +P +L
Sbjct: 120 PSGLCKLWIFG------NQLTSLPVLPPGLQELS----------VSDNQLASLPALPSEL 163
Query: 166 LHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTD 225
L + ++ LP L+ L+V + L LP +L KL +N
Sbjct: 164 CKLWAYNN----QLTSLPM---LPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNN---- 211
Query: 226 SLRYLPAGIGELI-------RLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGL 275
L LPA L RL S+ LK+L + R+ L
Sbjct: 212 RLTSLPALPSGLKELIVSGNRLTSL-----------PVLPSELKELM-VSGNRLTSL 256
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 9e-09
Identities = 59/290 (20%), Positives = 87/290 (30%), Gaps = 97/290 (33%)
Query: 128 LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLC 187
LP L +L L + N + +P LL L S + LP LC
Sbjct: 76 LPALPPELRTLE----------VSGNQLTSLPVLPPGLLELSIFSN-PLTHLPALPSGLC 124
Query: 188 ELY--------------NLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAG 233
+L+ L+ L+V + L LP +L KL +N L LP
Sbjct: 125 KLWIFGNQLTSLPVLPPGLQELSVSDNQ-LASLPALPSELCKLWAYNN----QLTSLPML 179
Query: 234 IGELI-------RLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARR 286
L +L S+ L KL + R+ L
Sbjct: 180 PSGLQELSVSDNQLASLPT-----------LPSELYKLWAY-NNRLTSL----------P 217
Query: 287 AELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGP-PPNLKKLRIDEYR 345
A L +L + N L +L P LK+L +
Sbjct: 218 ALPS---GLKELIVSG---------------NR-------LTSLPVLPSELKELMV---- 248
Query: 346 GRRNVVPISWF-MSLTNLRFLFLFGWRNC-EHLPP-LGKLPSLEYLEIEG 392
N ++ M + L L ++ N LP L L S + +EG
Sbjct: 249 -SGN--RLTSLPMLPSGLLSLSVYR--NQLTRLPESLIHLSSETTVNLEG 293
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 24/130 (18%)
Query: 150 LYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRG 209
+ + + +P + H+ L + + LP L L V + L LP
Sbjct: 47 VGESGLTTLPDCLPA--HITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQ-LTSLPVL 99
Query: 210 IGKLRKLMYLHNEGTDSLRYLPAGIGELI----RLRSVRKFVVGGGYDRACSLGSLKKLN 265
L +L N T L LP+G+ +L +L S+ L++L+
Sbjct: 100 PPGLLELSIFSNPLT-HLPALPSGLCKLWIFGNQLTSLPV-----------LPPGLQELS 147
Query: 266 LLRDCRIRGL 275
+ D ++ L
Sbjct: 148 -VSDNQLASL 156
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 23/135 (17%)
Query: 108 LRGLRSLLVESGEYSWSNEI--LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKL 165
GL+ L+V N + LP L +L L + N + +P L
Sbjct: 220 PSGLKELIVSG------NRLTSLPVLPSELKELM----------VSGNRLTSLPMLPSGL 263
Query: 166 LHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTD 225
L L + + ++ +LPE+L L + +N++ L E + ++
Sbjct: 264 LSL-SVY---RNQLTRLPESLIHLSSETTVNLEGNP-LSERTLQALREITSAPGYSGPII 318
Query: 226 SLRYLPAGIGELIRL 240
A R
Sbjct: 319 RFDMAGASAPRETRA 333
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 9e-09
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 15 GDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCSNGCLTVEIHSGEQS 74
+ E+ ++S G+ ++ +HD+ DF C ++ +
Sbjct: 408 TEEVEDILQEFVNKSLLF---CDRNGKSFRYYLHDLQVDFLT---EKNC--SQLQDLHKK 459
Query: 75 TISSF 79
I+ F
Sbjct: 460 IITQF 464
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 2e-08
Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 22/115 (19%)
Query: 128 LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLC 187
LP+L L L + N + +P L +Y++ ++ LPE
Sbjct: 115 LPELPASLKHLD----------VDNNQLTMLPELPALL---EYINA-DNNQLTMLPELPT 160
Query: 188 ELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRS 242
+LE L+V + + L LP L L N L LPA
Sbjct: 161 ---SLEVLSVRNNQ-LTFLPELPESLEALDVSTNL----LESLPAVPVRNHHSEE 207
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 3e-07
Identities = 21/117 (17%), Positives = 29/117 (24%), Gaps = 13/117 (11%)
Query: 125 NEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPE 184
+ F L G N + + L L + + LP+
Sbjct: 23 SGTYADYFSAWDKWEKQALP----GENRNEAVSLLKEC-LINQFSELQL-NRLNLSSLPD 76
Query: 185 TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241
L + L + L LP L L N L LP L L
Sbjct: 77 NLPP--QITVLEITQNA-LISLPELPASLEYLDACDNR----LSTLPELPASLKHLD 126
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 9e-07
Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 22/113 (19%)
Query: 128 LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLC 187
LP+L L L N + +P E LK+L + + + LPE
Sbjct: 95 LPELPASLEYLD----------ACDNRLSTLP---ELPASLKHLDVDNNQ-LTMLPELPA 140
Query: 188 ELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240
LE +N D+ + L LP L L +N+ L +LP L L
Sbjct: 141 ---LLEYINADNNQ-LTMLPELPTSLEVLSVRNNQ----LTFLPELPESLEAL 185
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 150 LYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRG 209
+ N + +P L +L ++ LPE +L+ L+VD+ + L LP
Sbjct: 87 ITQNALISLPELPASLEYLDACDN----RLSTLPELPA---SLKHLDVDNNQ-LTMLPEL 138
Query: 210 IGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241
L + +N+ L LP L L
Sbjct: 139 PALLEYINADNNQ----LTMLPELPTSLEVLS 166
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 52/389 (13%), Positives = 117/389 (30%), Gaps = 62/389 (15%)
Query: 126 EILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN--IEKLLHLKYLSLFGQKKIEKLP 183
+ F L+ L+ L L N + + L +L+ L + + ++
Sbjct: 88 SLSSSWFGPLSSLKYL-------NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140
Query: 184 E-TLCELYNLERLNVDHCKNLRELPRG-IGKLRKL--MYLHNEGTDSLRYLPAGIGELIR 239
L +L L + +LR + +R + + LH +L +
Sbjct: 141 RIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHL---SESAFLLEIFAD--I 194
Query: 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKL- 298
L SVR + L + + E+ L+ + +L+L
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254
Query: 299 GLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMS 358
+ F E++ + +E + +++L I ++ + +
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETV----TIRRLHIPQF--YLFYDLSTVYSL 308
Query: 359 LTNLRFLFLFGWRNC-EHLPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSV 415
L ++ + + + +P L SLE+L++ N +
Sbjct: 309 LEKVKRITV--ENSKVFLVPCSFSQHLKSLEFLDLS--------ENLMVEEYLKNSACKG 358
Query: 416 IAFPKLKHL---------------TFWVMNALEELDFE----TAIKREIIIMPRLSSLTI 456
A+P L+ L + L LD + ++ L +
Sbjct: 359 -AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL 417
Query: 457 WSCRKLKALPDHLLQKTTLQKLHIRRCPI 485
S ++ + + TL+ L + +
Sbjct: 418 -SSTGIRVVKTCIP--QTLEVLDVSNNNL 443
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 42/333 (12%), Positives = 94/333 (28%), Gaps = 68/333 (20%)
Query: 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSW-SNEILPQLFDKLTCLRA 140
+ + +L L A + ++ L + S L +L + L
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255
Query: 141 LKLEVREQGLYTNFIKKIPTNIE---------KLLHLKYLSLFGQKKIEKLPETLCELYN 191
++ N + + + + ++ L + L L
Sbjct: 256 VEF----DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311
Query: 192 LERLNVDHCKNLRELPRGIGK-LRKLMYL---HNEGTDSLRYLPAGIGEL-----IRLRS 242
++R+ V++ K + +P + L+ L +L N + A G + L
Sbjct: 312 VKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370
Query: 243 VRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHF 302
+ + +L +L L+ + + D + + + L L
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLD-ISRNTFHPMPD----------SCQWPEKMRFLNLSS 419
Query: 303 GHSRDGDEERAGRRENEEDEDERLLEAL--GPPPNLKKLRIDEYRGRRNVVPISWFMSLT 360
+ + P L+ L + S+ + L
Sbjct: 420 ---------------TG-------IRVVKTCIPQTLEVLDVSNNNLD------SFSLFLP 451
Query: 361 NLRFLFLFGWRNC-EHLPPLGKLPSLEYLEIEG 392
L+ L++ N + LP P L ++I
Sbjct: 452 RLQELYISR--NKLKTLPDASLFPVLLVMKISR 482
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 43/272 (15%), Positives = 73/272 (26%), Gaps = 92/272 (33%)
Query: 125 NEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI----PTNIEKLLHLKYLSLFGQK--K 178
+ L L L L N + + L+ L L
Sbjct: 323 FLVPCSFSQHLKSLEFLDL-------SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375
Query: 179 IEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYL---HNEGTDSLRYLPAGIG 235
++K E L L NL L++ +P K+ +L +R + I
Sbjct: 376 MQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST----GIRVVKTCI- 429
Query: 236 ELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSL 295
+L+ L++ + + L L
Sbjct: 430 ----------------------PQTLEVLDV-SNNNLDSFS----------LFLP---RL 453
Query: 296 LKLGLHFGHSRDGDEERAGRRENEEDEDERL--LEALGPPPNLKKLRIDEYRGRRN---V 350
+L + N +L L P L ++I RN
Sbjct: 454 QELYISR---------------N------KLKTLPDASLFPVLLVMKI-----SRNQLKS 487
Query: 351 VPISWFMSLTNLRFLFLFG--WR-NCEHLPPL 379
VP F LT+L+ ++L W +C + L
Sbjct: 488 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 519
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 3e-08
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 6 LSEKGPKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCSNGCLT 65
+ +++ D + L+ R + + K+ I+H F +++ +
Sbjct: 418 ICSNEEEQLDDEVADRLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTIA 474
Query: 66 VEIHSGEQ 73
I EQ
Sbjct: 475 NGISILEQ 482
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 7e-08
Identities = 30/143 (20%), Positives = 46/143 (32%), Gaps = 27/143 (18%)
Query: 124 SNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLP 183
L +L L L +N I+ + L L +S K+ +LP
Sbjct: 288 IFSGLSELPPNLYYLN----------ASSNEIRSLCDLPPSLEEL-NVS---NNKLIELP 333
Query: 184 ETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSV 243
LERL L E+P L++L +N LR P + LR
Sbjct: 334 ALPP---RLERLIASFNH-LAEVPELPQNLKQLHVEYNP----LREFPDIPESVEDLRMN 385
Query: 244 RKFVVGGGYDRACSLGSLKKLNL 266
+LK+L++
Sbjct: 386 SHLAEVPE-----LPQNLKQLHV 403
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 33/153 (21%), Positives = 54/153 (35%), Gaps = 38/153 (24%)
Query: 104 NVKGLRGLRSLLVESGEYSWSNEI--LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161
++ L L ++ ++ N + LP L L L + N++ +P
Sbjct: 232 ELQNLPFLTTIYADN------NLLKTLPDLPPSLEALN----------VRDNYLTDLPEL 275
Query: 162 IEKLLHLKYLSLFGQKKIEKLPETLCELY--------------NLERLNVDHCKNLRELP 207
+ L L + +LP L L +LE LNV + K L ELP
Sbjct: 276 PQSLTFLDVSENIFSG-LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELP 333
Query: 208 RGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240
+L +L+ N L +P L +L
Sbjct: 334 ALPPRLERLIASFN----HLAEVPELPQNLKQL 362
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 9e-07
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 18/115 (15%)
Query: 126 EILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPET 185
E LP+ L L A+ + N +KK+P + L L+ + G +E+LPE
Sbjct: 186 EELPE-LQNLPFLTAIYAD-------NNSLKKLP---DLPLSLESIVA-GNNILEELPE- 232
Query: 186 LCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240
L L L + D+ L+ LP L L N L LP L L
Sbjct: 233 LQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDN----YLTDLPELPQSLTFL 282
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 33/131 (25%)
Query: 128 LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQK---------- 177
LP+L L L N + ++P + L L + +
Sbjct: 86 LPELPPHLESLV----------ASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEY 135
Query: 178 ------KIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLP 231
++EKLPE L L+ ++VD+ L++LP L + +N L LP
Sbjct: 136 LGVSNNQLEKLPE-LQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNN----QLEELP 189
Query: 232 AGIGELIRLRS 242
+ L L +
Sbjct: 190 E-LQNLPFLTA 199
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 18/105 (17%)
Query: 150 LYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELY-------------NLERLN 196
+++ + ++P E + + P E L
Sbjct: 18 RHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELE 77
Query: 197 VDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241
+++ L LP L L+ N SL LP L L
Sbjct: 78 LNNL-GLSSLPELPPHLESLVASCN----SLTELPELPQSLKSLL 117
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 9e-04
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 19/110 (17%)
Query: 128 LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLC 187
+P+L L L + N +++ P E + L+ S + ++PE
Sbjct: 352 VPELPQNLKQLH----------VEYNPLREFPDIPESVEDLRMNS-----HLAEVPELPQ 396
Query: 188 ELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGEL 237
NL++L+V+ LRE P + L D + +L
Sbjct: 397 ---NLKQLHVETN-PLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKL 442
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 14/101 (13%)
Query: 124 SNEI----LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKI 179
NEI +L L L L NFI + + LK L L K+
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNL-------QYNFIYDVKGQV-VFAKLKTLDL-SSNKL 203
Query: 180 EKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLH 220
+ + +++ + K L + + + + L +
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFD 243
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 8e-04
Identities = 41/285 (14%), Positives = 86/285 (30%), Gaps = 78/285 (27%)
Query: 125 NEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN-IEKLLHLKYLSLFGQKKIEKLP 183
+ L L ++ L L N + +I + L+ L+L + +
Sbjct: 23 KQALASLRQSAWNVKELDL-------SGNPLSQISAADLAPFTKLELLNLSSNV-LYETL 74
Query: 184 ETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELI----- 238
+ L L L L++++ ++EL G + L +N ++ + G+
Sbjct: 75 D-LESLSTLRTLDLNNNY-VQELLVGP-SIETLHAANN----NISRVSCSRGQGKKNIYL 127
Query: 239 ---RLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSL 295
++ +R G ++ L+L + I + +L
Sbjct: 128 ANNKITMLRDLDEGC-------RSRVQYLDL-KLNEIDTVNF--------AELAASSDTL 171
Query: 296 LKLGLHFGHSRDGDEERAGRRENEEDEDERL--LEALGPPPNLKKLRIDEYRGRRN---V 350
L L N + ++ LK L + N
Sbjct: 172 EHLNLQ---------------YN------FIYDVKGQVVFAKLKTLDLS-----SNKLAF 205
Query: 351 VPISWFMSLTNLRFLFLFGWRNC--EHLPP-LGKLPSLEYLEIEG 392
+ F S + ++ L RN + L +LE+ ++ G
Sbjct: 206 MGPE-FQSAAGVTWISL---RNNKLVLIEKALRFSQNLEHFDLRG 246
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 25/151 (16%)
Query: 129 PQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI-EKLLHLKYLSLFGQKKIEKLPE--T 185
F L+ L+ L + + L LK L++ I+
Sbjct: 93 LGAFSGLSSLQKL-------VAVETNLASLENFPIGHLKTLKELNV-AHNLIQSFKLPEY 144
Query: 186 LCELYNLERLNVDHCKNLRELPRGI-GKLRKLMYLHNE---GTDSLRYLPAGIGELIRLR 241
L NLE L++ K ++ + L ++ L+ + + ++ G + IRL+
Sbjct: 145 FSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLK 203
Query: 242 SVR------KFVVGGGYDRACSLGSLKKLNL 266
+ K V G +DR L SL+K+ L
Sbjct: 204 ELALDTNQLKSVPDGIFDR---LTSLQKIWL 231
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 51/298 (17%), Positives = 90/298 (30%), Gaps = 71/298 (23%)
Query: 106 KGLRGLRSLLVESGEYSWSNEIL---PQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI 162
+ L++L SN I F L L L L N++ + ++
Sbjct: 73 QRCVNLQAL------VLTSNGINTIEEDSFSSLGSLEHLDL-------SYNYLSNLSSSW 119
Query: 163 -EKLLHLKYLSLFGQKKIEKLPE--TLCELYNLERLNVDHCKNLRELPRGI-GKLRKLMY 218
+ L L +L+L G + L E L L+ L V + ++ R L L
Sbjct: 120 FKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178
Query: 219 LHNEGTDSLRYLPAGI-GELIRLRSVR------KFVVGGGYDRACSLGSLKKLNL----L 267
L + + L+ + + + ++ D S++ L L L
Sbjct: 179 LEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV---TSSVECLELRDTDL 234
Query: 268 RDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLL 327
L L KK + + + ++
Sbjct: 235 DTFHFSELSTGETNS------LIKKFTFRNVKITDESLFQ------------------VM 270
Query: 328 EALGPPPNLKKLRIDEYRGRRN---VVPISWFMSLTNLRFLFLFG--WR-NCEHLPPL 379
+ L L +L RN VP F LT+L+ ++L W +C + L
Sbjct: 271 KLLNQISGLLELEFS-----RNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 323
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 66/415 (15%), Positives = 127/415 (30%), Gaps = 83/415 (20%)
Query: 99 IPIWDNVKGLRGLRSLLVESGEYSWSN---EILPQLFDKLTCLRALKLEVREQGLYTNFI 155
+ + L L L + S N I L + L L + L N +
Sbjct: 139 FKLPEYFSNLTNLEHLDLSS------NKIQSIYCTDLRVLHQMPLLNLSLD---LSLNPM 189
Query: 156 KKIPTNIEKLLHLKYLSLFG-QKKIEKLPETLCELYNLERLNVDHCK-----NLRELPRG 209
I K + L L+L + + + L LE + + NL + +
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249
Query: 210 -IGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLR 268
+ L L L YL + ++I L + L ++ +L
Sbjct: 250 ALEGLCNLTIEEF----RLAYLDYYLDDIIDLFN--------------CLTNVSSFSL-V 290
Query: 269 DCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLE 328
I + D S + L + FG + ++ +R
Sbjct: 291 SVTIERVKDFS--------YNFGWQHLELVNCKFGQF-PTLKLKSLKRLTFTSNKGGNAF 341
Query: 329 ALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNC-EHLPP-LGKLPSLE 386
+ P+L+ L + T+L++L L N + L LE
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF--NGVITMSSNFLGLEQLE 399
Query: 387 YLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHL-------------TFWVMNALE 433
+L+ + + + ++ S ++ L +L F +++LE
Sbjct: 400 HLDFQ--------HSNLKQM---SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448
Query: 434 ELD-----FETAIKREIII-MPRLSSLTIWSCRKLKALPDHLLQKTT-LQKLHIR 481
L F+ +I + L+ L + C +L+ L + LQ L++
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMS 502
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 61/381 (16%), Positives = 104/381 (27%), Gaps = 84/381 (22%)
Query: 122 SWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKL--LHLKYLSL-FGQKK 178
S ++ L L +L + E N K + +E L L ++ L +
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270
Query: 179 IEKLPETLCELYNLERLNVDHCKNLRELPRGIG--KLRKLMYLHNEGTDSLRYLPAG-IG 235
++ + + L N+ ++ + + + L ++ P +
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSV-TIERVKDFSYNFGWQHLELVNC----KFGQFPTLKLK 325
Query: 236 ELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSL 295
L RL GG L SL+ L+L + G S + SL
Sbjct: 326 SLKRLTFTS--NKGGNAFSEVDLPSLEFLDL-SRNGLSFKGCCSQS-------DFGTTSL 375
Query: 296 LKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRN----VV 351
L L F N + L+ L + + +
Sbjct: 376 KYLDLSF---------------NGV---ITMSSNFLGLEQLEHLDF-----QHSNLKQMS 412
Query: 352 PISWFMSLTNLRFLFLFGWRNC--EHLPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVE 407
S F+SL NL +L + + L SLE L++ GN F
Sbjct: 413 EFSVFLSLRNLIYLDI---SHTHTRVAFNGIFNGLSSLEVLKMA--------GNSFQEN- 460
Query: 408 SDTDGSSVIAFPKLKHLTFWVMNALEELD-----FETAIKREIIIMPRLSSLTIWSCRKL 462
F + L LD E + L L +
Sbjct: 461 -------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-F 506
Query: 463 KALPDHLLQK-TTLQKLHIRR 482
+L + +LQ L
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSL 527
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 16/136 (11%)
Query: 150 LYTNFIKKI-PTNIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELP 207
L N ++ + + L+ L L + I+ + L +L L +
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93
Query: 208 RGIGKLRKLMYL---HNEGTDSLRYLPAG-IGELIRLRSVR----KFVVGGGYDRACSLG 259
L L L +L L IG L L+ + + +L
Sbjct: 94 GAFSGLSSLQKLVAVET----NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 260 SLKKLNLLRDCRIRGL 275
+L+ L+ L +I+ +
Sbjct: 150 NLEHLD-LSSNKIQSI 164
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 21/145 (14%)
Query: 106 KGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI-EK 164
GL L L +E + I + L L L+L I I ++
Sbjct: 149 SGLNSLEQLTLEKCNLTS---IPTEALSHLHGLIVLRL-------RHLNINAIRDYSFKR 198
Query: 165 LLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYL---H 220
L LK L + ++ + NL L++ HC NL +P + L L +L +
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSY 257
Query: 221 NEGTDSLRYLPAGI-GELIRLRSVR 244
N + + + EL+RL+ ++
Sbjct: 258 NP----ISTIEGSMLHELLRLQEIQ 278
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 60/301 (19%), Positives = 86/301 (28%), Gaps = 82/301 (27%)
Query: 106 KGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI-EK 164
L L + S + P F+ L LR L L +N +K IP +
Sbjct: 53 ASFPHLEELELNENIVS---AVEPGAFNNLFNLRTLGL-------RSNRLKLIPLGVFTG 102
Query: 165 LLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPRGI-GKLRKLMYLH-- 220
L +L L + + KI L + +LYNL+ L V L + L L L
Sbjct: 103 LSNLTKLDI-SENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLE 160
Query: 221 -NEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVS 279
+L +P L L L L R I + D S
Sbjct: 161 KC----NLTSIPTEA-----------L---------SHLHGLIVLRL-RHLNINAIRDYS 195
Query: 280 DAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKL 339
++ L L + D NL L
Sbjct: 196 ---------FKRLYRLKVLEISHWPYLDTMTPNCLY-----------------GLNLTSL 229
Query: 340 RIDEYRGRRN---VVPISWFMSLTNLRFLFLFGWRNC-EHLPP--LGKLPSLEYLEIEGM 393
I VP L LRFL L N + L +L L+ +++ G
Sbjct: 230 SIT-----HCNLTAVPYLAVRHLVYLRFLNLSY--NPISTIEGSMLHELLRLQEIQLVGG 282
Query: 394 K 394
+
Sbjct: 283 Q 283
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 53/297 (17%), Positives = 93/297 (31%), Gaps = 78/297 (26%)
Query: 106 KGLRGLRSLLVESGEYSWSNEI---LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI 162
GL L L + N+I L +F L L++L+ + N + I
Sbjct: 101 TGLSNLTKLDISE------NKIVILLDYMFQDLYNLKSLE-------VGDNDLVYISHRA 147
Query: 163 -EKLLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLRELPRGI-GKLRKLMYL 219
L L+ L+L + +P E L L+ L L + H N+ + +L +L L
Sbjct: 148 FSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVL 205
Query: 220 HNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVS 279
L + +L L+ + C + + ++
Sbjct: 206 EISHWPYLDTMTPN---------------------CLYGLNLTSLS-ITHCNLTAVPYLA 243
Query: 280 DAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE-EDEDERLLEALGPPPNLKK 338
+ L L L N + +L L L++
Sbjct: 244 ---------VRHLVYLRFLNLS---------------YNPISTIEGSMLHEL---LRLQE 276
Query: 339 LRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNC-EHLPP--LGKLPSLEYLEIEG 392
+++ G+ VV F L LR L + G N L + +LE L ++
Sbjct: 277 IQL--VGGQLAVVEPYAFRGLNYLRVLNVSG--NQLTTLEESVFHSVGNLETLILDS 329
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 38/279 (13%), Positives = 80/279 (28%), Gaps = 56/279 (20%)
Query: 126 EILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPET 185
+ + L L L L N I I + L+ G + + + +
Sbjct: 167 YLSKEDMSSLQQATNLSLN-----LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKG 221
Query: 186 L--CELYNLERLNVDHCKNLRELPRGIGKLRKLMYL------HNEGTDSLRYLPAGIGEL 237
L + +L + + ++ + + M + + + +
Sbjct: 222 LKNSTIQSLWLGTFEDM-DDEDISPAVFEGLCEMSVESINLQKH----YFFNISSNT--F 274
Query: 238 IRLRSVRKFVVGGGY-----DRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKK 292
+++ + + L +LKKL L + L +S
Sbjct: 275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLV-LSANKFENLCQIS---------ASNF 324
Query: 293 KSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVP 352
SL L + G+++ + L NL++L + +
Sbjct: 325 PSLTHLSIK-GNTKRLELGT---------------GCLENLENLRELDLSHDDIETSDCC 368
Query: 353 ISWFMSLTNLRFLFLFGWRNC-EHLPP--LGKLPSLEYL 388
+L++L+ L L N L + P LE L
Sbjct: 369 NLQLRNLSHLQSLNLSY--NEPLSLKTEAFKECPQLELL 405
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 46/356 (12%), Positives = 102/356 (28%), Gaps = 76/356 (21%)
Query: 150 LYTNFIKKI-PTNIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELP 207
N + I T +L++L +L L + I + +T + L+ L + L +
Sbjct: 40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANP-LIFMA 97
Query: 208 RGI-GKLRKLMYL---HNEGTDSLRYLPAG-IGELIRLRSV---RKFVVGGGYDRACSLG 259
+ L +L + + + L S+ + +
Sbjct: 98 ETALSGPKALKHLFFIQT----GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153
Query: 260 SLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE 319
LK L+ ++ I L + ++ + L L+ N+
Sbjct: 154 KLKVLD-FQNNAIHYL---------SKEDMSSLQQATNLSLNLNG-------------ND 190
Query: 320 EDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPL 379
E + L + + ++ +L F + E + P
Sbjct: 191 IAGIEPGAFDS---AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT-FEDMDDEDISPA 246
Query: 380 ----GKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEEL 435
S+E + ++ + F + S+ TF + L+EL
Sbjct: 247 VFEGLCEMSVESINLQ--------KHYFFNISSN---------------TFHCFSGLQEL 283
Query: 436 DFE----TAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTT-LQKLHIRRCPIL 486
D + + ++ + L L + + + + L L L I+
Sbjct: 284 DLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKR 338
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 55/397 (13%), Positives = 108/397 (27%), Gaps = 92/397 (23%)
Query: 126 EILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI-EKLLHLKYLSLFGQKKIEKLPE 184
I F L L L N + + LK+L Q I +
Sbjct: 71 WIHEDTFQSQHRLDTLVL-------TANPLIFMAETALSGPKALKHLFF-IQTGISSIDF 122
Query: 185 -TLCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYL---HNEGTDSLRYLPAGIGELIR 239
L LE L + ++ + KL L +N ++ YL ++
Sbjct: 123 IPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNN----AIHYLSK--EDMSS 175
Query: 240 LRSVRKFVVGGGY-------DRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKK 292
L+ + A + LN + +
Sbjct: 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG-GTQNLLVIFKGLKN-------STI 227
Query: 293 KSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVP 352
+SL ++++ + +++ + + + +
Sbjct: 228 QSLWLGTFED---------------MDDEDISPAVFEGLCEMSVESINL--QKHYFFNIS 270
Query: 353 ISWFMSLTNLRFLFLFGWRNC-EHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDT 410
+ F + L+ L L LP L L +L+ L + N+F + +
Sbjct: 271 SNTFHCFSGLQELDLTA--THLSELPSGLVGLSTLKKLVLS--------ANKFENLCQIS 320
Query: 411 DGSSVIAFPKLKHL--------------TFWVMNALEELD-------FETAIKREIIIMP 449
+ FP L HL + L ELD ++ +
Sbjct: 321 ASN----FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376
Query: 450 RLSSLTIWSCRKLKALPDHLLQKTT-LQKLHIRRCPI 485
L SL + S + +L ++ L+ L + +
Sbjct: 377 HLQSLNL-SYNEPLSLKTEAFKECPQLELLDLAFTRL 412
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 9e-04
Identities = 53/361 (14%), Positives = 97/361 (26%), Gaps = 97/361 (26%)
Query: 153 NFIKKIPTNIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELPRG-I 210
+ +IP + + L + + T L NL L++ C + +
Sbjct: 22 LGLNEIPGTLPN--STECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTF 77
Query: 211 GKLRKLMYL---HNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLL 267
+L L N L ++ +LK L
Sbjct: 78 QSQHRLDTLVLTAN----PLIFMAETA-----------L---------SGPKALKHLFF- 112
Query: 268 RDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLL 327
I + + L +K+L L L N +
Sbjct: 113 IQTGISSIDFIP---------LHNQKTLESLYLGS---------------N-------HI 141
Query: 328 EALGPP-----PNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNC-EHLPP-LG 380
++ P LK L + SL L L N + P
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIH--YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199
Query: 381 KLPSLEYLEIEGMKSVKRV--GNEFLGVES---------DTDGSSVIAFPKLKHLTFWVM 429
+ L G +++ + G + ++S D + S F L ++
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS---- 255
Query: 430 NALEELDFE----TAIKREIII-MPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCP 484
+E ++ + I L L + + L LP L+ +TL+KL +
Sbjct: 256 --VESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANK 312
Query: 485 I 485
Sbjct: 313 F 313
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 5e-07
Identities = 72/416 (17%), Positives = 123/416 (29%), Gaps = 131/416 (31%)
Query: 126 EILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI-EKLLHLKYLSLFGQKKIEKLPE 184
++ L D + L L I++I T ++ L + I LP
Sbjct: 59 KLPAALLDSFRQVELLNLN-------DLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPP 110
Query: 185 -TLCELYNLERLNVDHCKNLRELPRGI-GKLRKLMYL---HNEGTDSLRYLPAGIGELIR 239
+ L L ++ L LPRGI KL L +N +L + +
Sbjct: 111 HVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN----NLERIEDDTFQ--- 162
Query: 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLG 299
+ SL+ L L R+ + +L SL
Sbjct: 163 -----------------ATTSLQNLQL-SSNRLTHV------------DLSLIPSLFHAN 192
Query: 300 LHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRR----------- 348
+ + N L L P +++L
Sbjct: 193 VSY---------------NL-------LSTLAIPIAVEELDASHNSINVVRGPVNVELTI 230
Query: 349 ------NVVPISWFMSLTNLRFLFLFGWRNC-EHLPP--LGKLPSLEYL----------- 388
N+ +W ++ L + L N E + K+ LE L
Sbjct: 231 LKLQHNNLTDTAWLLNYPGLVEVDL--SYNELEKIMYHPFVKMQRLERLYISNNRLVALN 288
Query: 389 -EIEGMKSVKRV---GNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKRE 444
+ + ++K + N L VE + F +L++L N++ L T
Sbjct: 289 LYGQPIPTLKVLDLSHNHLLHVERNQPQ-----FDRLENLYLD-HNSIVTLKLST----- 337
Query: 445 IIIMPRLSSLTI----WSCRKLKALPDHLLQKTTLQ-KLHIRRCPILEER-CRKET 494
L +LT+ W C L+AL ++ + H + LE C KE+
Sbjct: 338 ---HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKES 390
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 72/398 (18%), Positives = 124/398 (31%), Gaps = 52/398 (13%)
Query: 106 KGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI-EK 164
L L+ L + S I + F L LR L L ++ I + + +
Sbjct: 45 PFLEQLQLLELGSQ--YTPLTIDKEAFRNLPNLRILDLG-------SSKIYFLHPDAFQG 95
Query: 165 LLHLKYLSLFGQK--KIEKLPETLCELYNLERLNVDHCKNLRELPRG--IGKLRKLMYLH 220
L HL L L+ L L RL++ +R L GKL L +
Sbjct: 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSID 154
Query: 221 NEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRA-CSLGSLKKLNLLRDCRIRGLGDVS 279
+ + E ++ +++ F + + S+ K +N R+ + L DVS
Sbjct: 155 FSSN-QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL-DVS 212
Query: 280 DAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKL 339
G ++ K N +D D+ L +++ L
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL-ARSSVRHL 271
Query: 340 RIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNC-EHLPP--LGKLPSLEYLEIEGMKSV 396
+ G + F +L +L+ L L N + L +L+ L +
Sbjct: 272 DL--SHGFVFSLNSRVFETLKDLKVLNLAY--NKINKIADEAFYGLDNLQVLNLS----- 322
Query: 397 KRVGNEFLGVESDTDGSSVIAFPKLKHL-------------TFWVMNALEELDFETAIKR 443
N + S PK+ ++ TF + L+ LD
Sbjct: 323 ---YNLLGELYSSNFYG----LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
Query: 444 EIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIR 481
I +P + + S KL LP L + R
Sbjct: 376 TIHFIPSIPDI-FLSGNKLVTLPKINLTANLIHLSENR 412
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 68/409 (16%), Positives = 118/409 (28%), Gaps = 129/409 (31%)
Query: 126 EILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI-EKLLHLKYLSLFGQKKIEKLPE 184
++ L D + L L I++I T ++ L + G I LP
Sbjct: 65 KLPAALLDSFRQVELLNLN-------DLQIEEIDTYAFAYAHTIQKLYM-GFNAIRYLPP 116
Query: 185 -TLCELYNLERLNVDHCKNLRELPRGI-GKLRKLMYL---HNEGTDSLRYLPAGIGELIR 239
+ L L ++ L LPRGI KL L +N +L + +
Sbjct: 117 HVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN----NLERIEDDTFQ--- 168
Query: 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLG 299
+ SL+ L L R+ + +L SL
Sbjct: 169 -----------------ATTSLQNLQL-SSNRLTHV------------DLSLIPSLFHAN 198
Query: 300 LHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYR-------------- 345
+ + N L L P +++L
Sbjct: 199 VSY---------------NL-------LSTLAIPIAVEELDASHNSINVVRGPVNVELTI 236
Query: 346 ---GRRNVVPISWFMSLTNLRFLFLFGWRNC-EHLPP--LGKLPSLEYL----------- 388
N+ +W ++ L + L N E + K+ LE L
Sbjct: 237 LKLQHNNLTDTAWLLNYPGLVEVDL--SYNELEKIMYHPFVKMQRLERLYISNNRLVALN 294
Query: 389 -EIEGMKSVKRV---GNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKRE 444
+ + ++K + N L VE + F +L++L N++ L T
Sbjct: 295 LYGQPIPTLKVLDLSHNHLLHVERNQPQ-----FDRLENLYL-DHNSIVTLKLST----- 343
Query: 445 IIIMPRLSSLTI----WSCRKLKALPDHLLQKTTLQKLHIRRCPILEER 489
L +LT+ W C L+AL ++ + + E
Sbjct: 344 ---HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEH 389
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 22/115 (19%)
Query: 106 KGLRGLRSLLVESGEYSWSNEI--LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIE 163
++ L L + + N + L + L+ L L N + + N
Sbjct: 275 VKMQRLERLYISN------NRLVALNLYGQPIPTLKVLDLS-------HNHLLHVERNQP 321
Query: 164 KLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDH----CKNLRELPRGIGKLR 214
+ L+ L L I L + + L+ L + H C +LR L R + +
Sbjct: 322 QFDRLENLYLDHN-SIVTLKLST--HHTLKNLTLSHNDWDCNSLRALFRNVARPA 373
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 20/119 (16%)
Query: 106 KGLRGLRSLLVESGEYSWSNEI----LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161
++ L ++ NEI +L L L L NFI +
Sbjct: 141 GCRSRVQYLDLKL------NEIDTVNFAELAASSDTLEHLNL-------QYNFIYDVKGQ 187
Query: 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLH 220
+ LK L L K + + + +++ + K L + + + + L +
Sbjct: 188 V-VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFD 243
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 38/140 (27%), Positives = 53/140 (37%), Gaps = 16/140 (11%)
Query: 106 KGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI-EK 164
K LR L L + I F+ L L L+L + N + IP
Sbjct: 85 KHLRHLEILQLSRNHIR---TIEIGAFNGLANLNTLEL-------FDNRLTTIPNGAFVY 134
Query: 165 LLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPRGI-GKLRKLMYLHNE 222
L LK L L IE +P + +L RL++ K L + G L L YL+
Sbjct: 135 LSKLKELWL-RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193
Query: 223 GTDSLRYLPAGIGELIRLRS 242
+LR +P LI+L
Sbjct: 194 MC-NLREIPNLTP-LIKLDE 211
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 31/185 (16%), Positives = 53/185 (28%), Gaps = 50/185 (27%)
Query: 328 EALGPPPNLKKLRIDEYRGRRN---VVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKL 382
A LK+L + R N +P F + +LR L L + ++ L
Sbjct: 130 GAFVYLSKLKELWL-----RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184
Query: 383 PSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLT----------------F 426
+L YL + + L L F
Sbjct: 185 SNLRYLNLA--------MCNL---------REIPNLTPLIKLDELDLSGNHLSAIRPGSF 227
Query: 427 WVMNALEELDFE----TAIKREIII-MPRLSSLTIWSCRKLKALPDHLLQK-TTLQKLHI 480
+ L++L I+R + L + + L LP L L+++H+
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHL 286
Query: 481 RRCPI 485
P
Sbjct: 287 HHNPW 291
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 44/264 (16%), Positives = 79/264 (29%), Gaps = 53/264 (20%)
Query: 134 KLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLE 193
+ AL + + + T L + LS FG + + E + L NL
Sbjct: 11 VIFPDPALA-NAIKIAAGKSNVTDTVT-QADLDGITTLSAFG-TGVTTI-EGVQYLNNLI 66
Query: 194 RLNVDHCKNLRELPRGIGKLRKLMYL---HNEGTDSLRYLPAGIGELIRLRSVRKFVVGG 250
L + + + +L + L K+ L N + + I L ++++ +
Sbjct: 67 GLELKDNQ-ITDLA-PLKNLTKITELELSGNPLKN-----VSAIAGLQSIKTL--DLTST 117
Query: 251 GYDRACSLGSLKKLNLL--RDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDG 308
L L L +L +I + + L +L L + D
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNI-----------SPLAGLTNLQYLSIGNAQVSD- 165
Query: 309 DEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLF 368
L L L L+ D+ + IS SL NL + L
Sbjct: 166 ------------------LTPLANLSKLTTLKADD----NKISDISPLASLPNLIEVHLK 203
Query: 369 GWRNCEHLPPLGKLPSLEYLEIEG 392
+ PL +L + +
Sbjct: 204 N-NQISDVSPLANTSNLFIVTLTN 226
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 53/278 (19%), Positives = 91/278 (32%), Gaps = 61/278 (21%)
Query: 124 SNEIL-PQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKL 182
S I +++ AL E + L + + L + L I+ +
Sbjct: 5 SATITQDTPINQIFTDTALA-EKMKTVLGKTNVTDTVS-QTDLDQVTTLQADR-LGIKSI 61
Query: 183 PETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYL---HNEGTDSLRYLPAGIGELIR 239
+ L NL ++N + + L ++ + L KL+ + +N+ D I L
Sbjct: 62 DG-VEYLNNLTQINFSNNQ-LTDIT-PLKNLTKLVDILMNNNQIAD--------ITPLAN 110
Query: 240 LRSVRKFVVGG----GYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSL 295
L ++ + D +L +L +L L I + L SL
Sbjct: 111 LTNLTGLTLFNNQITDIDPLKNLTNLNRLEL-SSNTISDIS-----------ALSGLTSL 158
Query: 296 LKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISW 355
+L + L+ L L++L I + V IS
Sbjct: 159 QQLSFGNQVTD--------------------LKPLANLTTLERLDISSNK----VSDISV 194
Query: 356 FMSLTNLRFLFLFGWRNC-EHLPPLGKLPSLEYLEIEG 392
LTNL L N + PLG L +L+ L + G
Sbjct: 195 LAKLTNLESLIA--TNNQISDITPLGILTNLDELSLNG 230
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 4e-06
Identities = 56/300 (18%), Positives = 107/300 (35%), Gaps = 75/300 (25%)
Query: 103 DNVKGLRGLRSLLVESGEYSWSNEIL-PQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161
+ GL L+ L S+ N++ + LT L L + +N + I
Sbjct: 150 SALSGLTSLQQL-------SFGNQVTDLKPLANLTTLERL-------DISSNKVSDIS-V 194
Query: 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYL-- 219
+ KL +L+ L +I + L L NL+ L+++ + L+++ + L L L
Sbjct: 195 LAKLTNLESLIA-TNNQISDITP-LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDL 250
Query: 220 -HNEGTDSLRYLPAGIGELIRLRSVRKFVVGG----GYDRACSLGSLKKLNLLRDCRIRG 274
+N+ + L + L +L ++ +G L +L L L + ++
Sbjct: 251 ANNQ----ISNLA-PLSGLTKLTELK---LGANQISNISPLAGLTALTNLE-LNENQLED 301
Query: 275 LGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPP 334
+ + + K+L L L+F + D + +
Sbjct: 302 I-----------SPISNLKNLTYLTLYFNNISD-------------------ISPVSSLT 331
Query: 335 NLKKLRIDEYRGRRNVVP-ISWFMSLTNLRFLFLFGWRNC-EHLPPLGKLPSLEYLEIEG 392
L++L N V +S +LTN+ +L N L PL L + L +
Sbjct: 332 KLQRLFFYN-----NKVSDVSSLANLTNINWLSAGH--NQISDLTPLANLTRITQLGLND 384
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 4e-06
Identities = 63/391 (16%), Positives = 123/391 (31%), Gaps = 106/391 (27%)
Query: 127 ILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186
LP +++ L E L + + T E+L + L + G +K+ + +
Sbjct: 7 TLPAPINQIFPDADLA-EGIRAVLQKASVTDVVT-QEELESITKLVVAG-EKVASIQG-I 62
Query: 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYL---HNEGTDSLRYLPAGIGELIRLR-- 241
L NLE LN++ + + ++ + L KL L N+ TD + + L LR
Sbjct: 63 EYLTNLEYLNLNGNQ-ITDIS-PLSNLVKLTNLYIGTNKITD-----ISALQNLTNLREL 115
Query: 242 --------SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKK 293
+ +L + LNL + + L + L
Sbjct: 116 YLNEDNISDISPL---------ANLTKMYSLNLGANHNLSDL-----------SPLSNMT 155
Query: 294 SLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPI 353
L L + +D + + +L L + + I
Sbjct: 156 GLNYLTVTESKVKD-------------------VTPIANLTDLYSLSL----NYNQIEDI 192
Query: 354 SWFMSLTNLRFLFLFGWRNC-EHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDG 412
S SLT+L + + N + P+ + L L+I N+
Sbjct: 193 SPLASLTSLHYFTA--YVNQITDITPVANMTRLNSLKIG--------NNKI--------- 233
Query: 413 SSVIAFPKLKHLT--------------FWVMNALEELDFE----TAIKREIIIMPRLSSL 454
+ + L LT + L+ L+ + I + + +L+SL
Sbjct: 234 TDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSL 292
Query: 455 TIWSCRKLKALPDHLLQKTTLQKLHIRRCPI 485
+ + + + + T L L + + I
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 43/273 (15%), Positives = 86/273 (31%), Gaps = 70/273 (25%)
Query: 132 FDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYN 191
LT + +L L N + + + L YL++ + K++ + + L +
Sbjct: 128 LANLTKMYSLNL-------GANHNLSDLSPLSNMTGLNYLTV-TESKVKDVTP-IANLTD 178
Query: 192 LERLNVDHCKNLRELPRGIGKLRKLMYL---HNEGTDSLRYLPAGIGELIRLRSVRKFVV 248
L L++++ + + ++ + L L Y N+ TD I + + + +
Sbjct: 179 LYSLSLNYNQ-IEDIS-PLASLTSLHYFTAYVNQITD--------ITPVANMTRLNSLKI 228
Query: 249 GG----GYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGH 304
G +L L L + +I + ++ L L +
Sbjct: 229 GNNKITDLSPLANLSQLTWLE-IGTNQISDIN-----------AVKDLTKLKMLNVG--- 273
Query: 305 SRDGDEERAGRRENE-EDEDERLLEALGPPPNLKKLRIDEYRGRRN---VVPISWFMSLT 360
N+ D + L L L ++ N + LT
Sbjct: 274 ------------SNQISD-----ISVLNNLSQLNSLFLN-----NNQLGNEDMEVIGGLT 311
Query: 361 NLRFLFLFGWRNC-EHLPPLGKLPSLEYLEIEG 392
NL LFL N + PL L ++ +
Sbjct: 312 NLTTLFLSQ--NHITDIRPLASLSKMDSADFAN 342
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 15/140 (10%)
Query: 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLL 166
GL + + + + S+ I F + L +++ I IP +
Sbjct: 143 GLNQMIVVELGTNPLK-SSGIENGAFQGMKKLSYIRI-------ADTNITTIPQGL--PP 192
Query: 167 HLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPRGI-GKLRKLMYLHNEGT 224
L L L KI K+ +L L NL +L + + + G L LH
Sbjct: 193 SLTELHL-DGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN 250
Query: 225 DSLRYLPAGIGELIRLRSVR 244
L +P G+ + ++ V
Sbjct: 251 -KLVKVPGGLADHKYIQVVY 269
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 9e-06
Identities = 49/246 (19%), Positives = 76/246 (30%), Gaps = 62/246 (25%)
Query: 59 CSNGCL----TVEIHSGEQSTISS--FGETKILHLML----TLHRGASVPIPIWDNVKGL 108
C + V + + +T ILHL T +
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLAT---------LMPY 54
Query: 109 RGLRSLLVESGEYSWSNEI--LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLL 166
L L E+ L + L L L L N ++ +P + L
Sbjct: 55 TRLTQL------NLDRAELTKLQ-VDGTLPVLGTLDL-------SHNQLQSLPLLGQTLP 100
Query: 167 HLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPRGI----GKLRKLMYLHN 221
L L + ++ LP L L L+ L + + L+ LP G+ KL KL L N
Sbjct: 101 ALTVLDV-SFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKL-SLAN 157
Query: 222 EGTDSLRYLPAGI-GELIRLRSVR------KFVVGGGYDRACSLGSLKKLNLLR-----D 269
++L LPAG+ L L ++ + G + L L +
Sbjct: 158 ---NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG----SHLLPFAFLHGNPWLCN 210
Query: 270 CRIRGL 275
C I
Sbjct: 211 CEILYF 216
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 72/385 (18%), Positives = 129/385 (33%), Gaps = 77/385 (20%)
Query: 125 NEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN-IEKLLHLKYLSLFGQKKIEKL- 182
+++ P+L KL L+ L L+ N + ++ +L L L I+K+
Sbjct: 62 SKLEPELCQKLPMLKVLNLQ-------HNELSQLSDKTFAFCTNLTELHLMSNS-IQKIK 113
Query: 183 PETLCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYL---HNEGTDSLRYLPAGIGELI 238
+ NL L++ H L G +L L L +N ++ L + ++
Sbjct: 114 NNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNN----KIQALKSEELDIF 168
Query: 239 RLRSVRKFVVGG----GYDRAC--SLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKK 292
S++K + + C ++G L L L + ++ E +
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL-NNVQLGPSLTEKLCLELANTSIRN- 226
Query: 293 KSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVP 352
L +S+ L NL L + NVV
Sbjct: 227 -------LSLSNSQL------------STTSNTTFLGL-KWTNLTMLDL--SYNNLNVVG 264
Query: 353 ISWFMSLTNLRFLFLFGWRNC-EHLPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVESD 409
F L L + FL N +HL L L ++ YL ++ + S
Sbjct: 265 NDSFAWLPQLEYFFLEY--NNIQHLFSHSLHGLFNVRYLNLK--------RSFTKQSISL 314
Query: 410 TDGSSVIAFPKLKHLTFWVMNALEELDFE----TAIKREIII-MPRLSSLTI-WSCRKLK 463
+ PK+ +F + LE L+ E IK + + L L++ S L+
Sbjct: 315 A------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368
Query: 464 ALPDHL---LQKTTLQKLHIRRCPI 485
L + L + L L++ + I
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKI 393
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 60/388 (15%), Positives = 107/388 (27%), Gaps = 103/388 (26%)
Query: 125 NEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSL--------FGQ 176
N + F L L LE Y N ++ L +++YL+L
Sbjct: 261 NVVGNDSFAWLPQLEYFFLE------YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314
Query: 177 KKIEKL-PETLCELYNLERLNVDHCKNLRELPRGI-GKLRKLMYL---HNEGTDSLRYLP 231
+ K+ + L LE LN++ ++ + + L L YL ++ SLR L
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSF--TSLRTLT 371
Query: 232 AGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEK 291
+ + L LN L +I + +
Sbjct: 372 NETF------------------VSLAHSPLHILN-LTKNKISKIESDA---------FSW 403
Query: 292 KKSLLKLGL---HFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRR 348
L L L G G N+ ++ +
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQ-------------------EWRGLENIFEIYLS-----Y 439
Query: 349 N---VVPISWFMSLTNLRFLFLFG---WRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNE 402
N + + F + +L+ L L P L +L L++ N
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS--------NNN 491
Query: 403 FLGVESDTDGSSVIAFPKLKHLTFWVM--NALEELDFETAIKREIIIMPRLSSLTIWSCR 460
+ D L+ L + N L L I + LS L I +
Sbjct: 492 IANINDD-------MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544
Query: 461 --KLKALPDHLLQKTT-LQKLHIRRCPI 485
+P + + L+ + + +
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNL 572
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 9e-06
Identities = 39/161 (24%), Positives = 60/161 (37%), Gaps = 44/161 (27%)
Query: 126 EILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI-EKLLHLKYLSLFGQKKIEKLPE 184
E+ P LF L L+ L L N ++ +P + L +L +L L G +I +PE
Sbjct: 119 ELGPGLFRGLAALQYLY-------LQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPE 170
Query: 185 -TLCELYNLERLNVDHCKNLRELPRGI-GKLRKLMYL---HNEGTDSLRYLPAGIGELIR 239
L++L+RL + + + + L +LM L N +L LP
Sbjct: 171 RAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN----NLSALPTEA----- 220
Query: 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLR-----DCRIRGL 275
L +L+ L L DCR R L
Sbjct: 221 ------LA---------PLRALQYLRLNDNPWVCDCRARPL 246
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 25/137 (18%)
Query: 106 KGLRGLRSLLVESGEYSWSNEIL---PQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI 162
L L SLL+ N + + F + LR L L +N + + +
Sbjct: 61 TRLTNLHSLLLSH------NHLNFISSEAFVPVPNLRYLD-------LSSNHLHTLDEFL 107
Query: 163 -EKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPRGI----GKLRKL 216
L L+ L L+ I + ++ L++L + + + P + KL KL
Sbjct: 108 FSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKL 165
Query: 217 MYLHNEGTDSLRYLPAG 233
M L L+ LP
Sbjct: 166 MLLDLSSN-KLKKLPLT 181
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 14/142 (9%)
Query: 103 DNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI 162
D + +L + I L + L L L + G N + IP I
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYI-----GGINNLVGPIPPAI 97
Query: 163 EKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLR-ELPRGIGKLRKLMYL-- 219
KL L YL + +P+ L ++ L L+ + L LP I L L+ +
Sbjct: 98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITF 156
Query: 220 -HNEGTDSLRYLPAGIGELIRL 240
N + + +P G +L
Sbjct: 157 DGNRISGA---IPDSYGSFSKL 175
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 42/177 (23%)
Query: 127 ILPQLFDKLTCLRALKL-----------------EVREQGLYTNFIKKIPTNI-EKLLHL 168
+ + F +LT LR L L + + N ++ +P + ++L++L
Sbjct: 52 LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111
Query: 169 KYLSLFGQKKIEKLPETLCE-LYNLERLNVDHCKNLRELPRGI----GKLRKLMYLHNEG 223
L L + +++ LP + + L L L++ + + L+ LP+G+ L++L L+N
Sbjct: 112 AELRL-DRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKEL-RLYN-- 166
Query: 224 TDSLRYLPAGI-GELIRLRSVR------KFVVGGGYDRACSLGSLKKLNLLR---DC 270
+ L+ +P G +L L++++ K V G +D L LK L L DC
Sbjct: 167 -NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS---LEKLKMLQLQENPWDC 219
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 8e-04
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 24/132 (18%)
Query: 95 ASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEI--LPQ-LFDKLTCLRALKLEVREQGLY 151
++PI ++D L L L N++ LP +FD LT L L L
Sbjct: 98 QALPIGVFD---QLVNLAEL------RLDRNQLKSLPPRVFDSLTKLTYL-------SLG 141
Query: 152 TNFIKKIPTNI-EKLLHLKYLSLFGQKKIEKLPETLCE-LYNLERLNVDHCKNLRELPRG 209
N ++ +P + +KL LK L L+ +++++PE + L L+ L +D+ L+ +P G
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLY-NNQLKRVPEGAFDKLTELKTLKLDN-NQLKRVPEG 199
Query: 210 I-GKLRKLMYLH 220
L KL L
Sbjct: 200 AFDSLEKLKMLQ 211
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 19/135 (14%)
Query: 106 KGLRGLRSLLVESGEYSWSN---EILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI 162
L L + + +N I P+ F L L+ L + IK +P
Sbjct: 76 SNLPKLHEIRI-----EKANNLLYINPEAFQNLPNLQYL-------LISNTGIKHLPDVH 123
Query: 163 -EKLLHLKYLSLFGQKKIEKLPE-TLCEL-YNLERLNVDHCKNLRELPRGIGKLRKLMYL 219
L L + I + + L + L ++ ++E+ +L L
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDEL 182
Query: 220 HNEGTDSLRYLPAGI 234
+ ++L LP +
Sbjct: 183 NLSDNNNLEELPNDV 197
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 15/121 (12%)
Query: 126 EILPQLFDKLTC-LRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPE 184
I F L+ L L N I++I + L L+L +E+LP
Sbjct: 143 TIERNSFVGLSFESVILWL-------NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195
Query: 185 -TLCELYNLERLNVDHCKNLRELPRGI-GKLRKLMYLHNEGTDSLRYLPAGIGELIRLRS 242
L++ + LP L+KL +L+ LP + +L+ L
Sbjct: 196 DVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTY---NLKKLPT-LEKLVALME 250
Query: 243 V 243
Sbjct: 251 A 251
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 34/256 (13%), Positives = 67/256 (26%), Gaps = 62/256 (24%)
Query: 150 LYTNFIKKIPTNI-EKLLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLRELP 207
++ I L+ + + +E + + L L + ++ NL +
Sbjct: 37 FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96
Query: 208 RGI-GKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266
L L YL T +++LP L++
Sbjct: 97 PEAFQNLPNLQYLLISNT-GIKHLPDVHK--------------------IHSLQKVLLDI 135
Query: 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERL 326
+ I + S G + + L L+ +N
Sbjct: 136 QDNINIHTIERNSFVGLSFE--------SVILWLN---------------KNG------- 165
Query: 327 LEALGPPPNLKKLRIDEYRGRRN----VVPISWFMSLTNLRFLFLFGWRNCEHLPP--LG 380
++ + ++DE N +P F + L + R LP L
Sbjct: 166 IQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLE 223
Query: 381 KLPSLEYLEIEGMKSV 396
L L +K +
Sbjct: 224 NLKKLRARSTYNLKKL 239
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 66/365 (18%), Positives = 111/365 (30%), Gaps = 90/365 (24%)
Query: 125 NEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPE 184
++L L +L + + I + IEKL L L I L
Sbjct: 31 QATDTISEEQLATLTSLDC-------HNSSITDMT-GIEKLTGLTKLICTSNN-ITTLD- 80
Query: 185 TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVR 244
L + NL L D K L L + L KL YL+ + L L + + L +
Sbjct: 81 -LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLN 133
Query: 245 KFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGH 304
C+ +L ++++ + ++ L D + + ++ + L L F
Sbjct: 134 -----------CARNTLTEIDVSHNTQLTEL-DCHLNKKITKLDVTPQTQLTTLDCSFNK 181
Query: 305 SRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRN---VVPISWFMSLTN 361
+ D + L +L D N + ++
Sbjct: 182 ITELD--------------------VSQNKLLNRLNCDT-----NNITKLDLN---QNIQ 213
Query: 362 LRFLFLFGWRNC-EHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPK 420
L FL N + + L L Y + N ++ D S+ K
Sbjct: 214 LTFLDCSS--NKLTEID-VTPLTQLTYFDCS--------VNPL----TELDVST---LSK 255
Query: 421 LKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHI 480
L L + L E+D +L CRK+K L + T L L
Sbjct: 256 LTTLHC-IQTDLLEIDLTH--------NTQLIYFQAEGCRKIKELD--VTHNTQLYLLDC 304
Query: 481 RRCPI 485
+ I
Sbjct: 305 QAAGI 309
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 2/93 (2%)
Query: 150 LYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRG 209
+ I L +L+ L + G+ L L +L L++ H + +
Sbjct: 73 INNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131
Query: 210 IGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRS 242
I L K+ + ++ + + L L+S
Sbjct: 132 INTLPKVNSIDLSYNGAITDIM-PLKTLPELKS 163
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 150 LYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRG 209
L + + T IE ++K L++ + L NLERL + +
Sbjct: 51 LANINVTDL-TGIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPN 107
Query: 210 IGKLRKLMYL---HNEGTDSLRYLPAGIGELIRLRS 242
+ L L L H+ DS + I L ++ S
Sbjct: 108 LSGLTSLTLLDISHSAHDDS---ILTKINTLPKVNS 140
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 18/121 (14%)
Query: 103 DNVKGLRGLRSLLVESGEYSWSNEI---LPQLFDKLTCLRALKLEVREQGLYTNFIKKIP 159
+ + GL L L ++ LT L L + ++ I
Sbjct: 82 NPISGLSNLERL------RIMGKDVTSDKIPNLSGLTSLTLLDIS------HSAHDDSIL 129
Query: 160 TNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYL 219
T I L + + L I + L L L+ LN+ + + RGI KL L
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDG-VHDY-RGIEDFPKLNQL 186
Query: 220 H 220
+
Sbjct: 187 Y 187
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 57/327 (17%), Positives = 102/327 (31%), Gaps = 79/327 (24%)
Query: 77 SSFGETKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEIL---PQLFD 133
+F K+ L L + +S + ++ L GL + GE+ + P + +
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMK--TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256
Query: 134 KLTCLRALKLEVREQGLYTNFIKKI-PTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNL 192
L + + L L ++ +SL G I+ L + + + +
Sbjct: 257 GLCDVTIDEFR-----LTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLED-VPKHFKW 309
Query: 193 ERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGG 251
+ L++ C L++ P + L+ L N+G+ S +
Sbjct: 310 QSLSIIRC-QLKQFPTLDLPFLKSLTLTMNKGSISFK----------------------- 345
Query: 252 YDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEE 311
+L SL L+L + G S + SL L L F
Sbjct: 346 ---KVALPSLSYLDL-SRNALSFSGCCSYSDL-------GTNSLRHLDLSF--------- 385
Query: 312 RAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRN----VVPISWFMSLTNLRFLFL 367
N L L+ L + V S F+SL L +L +
Sbjct: 386 ------NGAIIMSANFMGL---EELQHLDFQH-----STLKRVTEFSAFLSLEKLLYLDI 431
Query: 368 FGWRNCEHLPP--LGKLPSLEYLEIEG 392
+ N + L SL L++ G
Sbjct: 432 -SYTNTKIDFDGIFLGLTSLNTLKMAG 457
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 62/398 (15%), Positives = 113/398 (28%), Gaps = 87/398 (21%)
Query: 99 IPIWDNVKGLRGLRSLLVESGEYSWSN---EILPQLFDKLTCLRALKLEVREQGLYTNFI 155
+ L L + + N I L + L + + N I
Sbjct: 143 CKLPAYFSNLTNLVHVDLSY------NYIQTITVNDLQFLRENPQVNLSLD---MSLNPI 193
Query: 156 KKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRK 215
I + + L L+L G + +T + NL L+V R + R
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ--NLAGLHV-----HRLILGEFKDERN 246
Query: 216 LMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGL 275
L + L + + R + L ++ ++ L I+ L
Sbjct: 247 LEIFEPSIMEGLCDV-----TIDEFRLTYTNDFSDDIVKFHCLANVSAMS-LAGVSIKYL 300
Query: 276 GDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPN 335
DV + K +SL + D P
Sbjct: 301 EDV--------PKHFKWQSLSIIRCQLKQFPTLD-----------------------LPF 329
Query: 336 LKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNC-EHLPP----LGKLPSLEYLEI 390
LK L + +G ++L +L +L L N SL +L++
Sbjct: 330 LKSLTLTMNKGSI----SFKKVALPSLSYLDLSR--NALSFSGCCSYSDLGTNSLRHLDL 383
Query: 391 EGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPR 450
N + + ++ G +L+HL F + L+ + +A + +
Sbjct: 384 S--------FNGAIIMSANFMGL-----EELQHLDF-QHSTLKRVTEFSAFLS----LEK 425
Query: 451 LSSLTIWSCRKLKALPDHLLQK-TTLQKLHIRRCPILE 487
L L I K D + T+L L + +
Sbjct: 426 LLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGNSFKD 462
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 54/233 (23%), Positives = 91/233 (39%), Gaps = 51/233 (21%)
Query: 59 CSNGCLTVEIHSGEQSTISSF-GETKILHLMLTLHRGASVP-IPIWDNVKGLRGLRSLLV 116
+ + + + I ++ SV I NV+ L
Sbjct: 17 AFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYL-------- 68
Query: 117 ESGEYSWSNEI--LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI-EKLLHLKYLSL 173
N++ + +LT L L L N ++ +P + +KL +LK L L
Sbjct: 69 ----ALGGNKLHDIS-ALKELTNLTYLILT-------GNQLQSLPNGVFDKLTNLKELVL 116
Query: 174 FGQKKIEKLPETLC-ELYNLERLNVDHCKNLRELPRGI-GKLRKLMYLHNEGTDSLRYLP 231
+ +++ LP+ + +L NL LN+ H + L+ LP+G+ KL L L + L+ LP
Sbjct: 117 -VENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELD-LSYNQLQSLP 173
Query: 232 AGI----GELIR-------LRSVRKFVVGGGYDRACSLGSLKKLNLLR---DC 270
G+ +L L+SV G +DR L SL+ + L DC
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKSVPD----GVFDR---LTSLQYIWLHDNPWDC 219
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 25/142 (17%)
Query: 89 LTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEI--LPQ-LFDKLTCLRALKLEV 145
L L+ + K L LR + + N+I + + F+ + + +
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSN------NKITDIEEGAFEGASGVNEI---- 86
Query: 146 REQGLYTNFIKKIPTNI-EKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNL 203
L +N ++ + + + L LK L L +I + + L ++ L++ + +
Sbjct: 87 ---LLTSNRLENVQHKMFKGLESLKTLML-RSNRITCVGNDSFIGLSSVRLLSLYDNQ-I 141
Query: 204 RELPRGI----GKLRKLMYLHN 221
+ G L L L
Sbjct: 142 TTVAPGAFDTLHSLSTL-NLLA 162
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 7e-05
Identities = 25/176 (14%), Positives = 58/176 (32%), Gaps = 24/176 (13%)
Query: 98 PIPIWDNVKGLRGLRSLLVESGEYSWSNEI---LPQLFDKLTCLRALKLEVREQGLYTNF 154
IP + ++ L +L++ N++ +P T L + L
Sbjct: 457 EIP--QELMYVKTLETLIL------DFNDLTGEIPSGLSNCTNLNWISLS------NNRL 502
Query: 155 IKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLR-ELPRGIGKL 213
+IP I +L +L L L +P L + +L L+++ +P + K
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT-NLFNGTIPAAMFKQ 561
Query: 214 RKLM---YLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266
+ ++ + ++ + + G ++ L + N+
Sbjct: 562 SGKIAANFIAGKRYVYIKNDG--MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 9e-05
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 125 NEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI-EKLLHLKYLSLFGQKKIEKLP 183
N+I F LT L L L NF+ I + + E L L+ L L I L
Sbjct: 312 NKIDDNAFWGLTHLLKL-------NLSQNFLGSIDSRMFENLDKLEVLDL-SYNHIRALG 363
Query: 184 E-TLCELYNLERLNVDHCKNLRELPRGI-GKLRKLMYLH 220
+ + L NL+ L +D + L+ +P GI +L L +
Sbjct: 364 DQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIW 401
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 50/298 (16%), Positives = 92/298 (30%), Gaps = 35/298 (11%)
Query: 106 KGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI-EK 164
L+ L+ L VE I F L+ L LKL N ++ T
Sbjct: 51 SRLQDLQFLKVEQQTPGLV--IRNNTFRGLSSLIILKL-------DYNQFLQLETGAFNG 101
Query: 165 LLHLKYLSLFG-QKKIEKLPE-TLCELYNLERLNVDHCKNLREL-PRGI-GKLRKL--MY 218
L +L+ L+L L L +LE L + ++++ P +R+ +
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLD 160
Query: 219 LHN-----EGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIR 273
L + L L+RL S+ + + G+ K + +
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220
Query: 274 GLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPP 333
G G + + K + L L ++ ++ + + L
Sbjct: 221 GNGFKESMAKRFFDAIAGTK-IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL-----EA 274
Query: 334 PNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNC-EHLPP--LGKLPSLEYL 388
+K + + + + S F T+L L L +N + L L L
Sbjct: 275 SGVKTCDL--SKSKIFALLKSVFSHFTDLEQLTLA--QNEINKIDDNAFWGLTHLLKL 328
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 64/418 (15%), Positives = 116/418 (27%), Gaps = 89/418 (21%)
Query: 99 IPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI 158
+ + L L L + S I L + L L + L N + I
Sbjct: 139 FKLPEYFSNLTNLEHLDLSS--NKIQ-SIYCTDLRVLHQMPLLNLSLD---LSLNPMNFI 192
Query: 159 PTNIEKLLHLKYLSLFG-QKKIEKLPETLCELYNLERLN-----VDHCKNLRELPRGI-G 211
K + L L+L + + + L LE + NL + +
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252
Query: 212 KLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGY----DRACSLGSLKKLNLL 267
L L YL I L +V F + + L L+
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 312
Query: 268 RDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLL 327
+C+ + KSL +L +
Sbjct: 313 -NCKFGQFPTLKL------------KSLKRLTFTSNKGGN-------------------A 340
Query: 328 EALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLE 386
+ P+L+ L + T+L++L L + + L LE
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL-SFNGVITMSSNFLGLEQLE 399
Query: 387 YLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLT----------------FWVMN 430
+L+ + + + S F L++L F ++
Sbjct: 400 HLDFQ--------HSNLKQM------SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445
Query: 431 ALEELD-----FETAIKREII-IMPRLSSLTIWSCRKLKALPDHLLQKTT-LQKLHIR 481
+LE L F+ +I + L+ L + C +L+ L + LQ L++
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMA 502
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 18/137 (13%)
Query: 150 LYTNFIKKIPTNI-EKLLHLKYLSLFGQKKIEKLPETLCE-LYNLERLNVDHCKNLRELP 207
L N ++ + + L+ L L + I+ + + + L +L L + ++ L
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLA 92
Query: 208 RGI-GKLRKLMYL---HNEGTDSLRYLPAG-IGELIRLRSVR----KFVVGGGYDRACSL 258
G L L L +L L IG L L+ + + +L
Sbjct: 93 LGAFSGLSSLQKLVAVET----NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 259 GSLKKLNLLRDCRIRGL 275
+L+ L+ L +I+ +
Sbjct: 149 TNLEHLD-LSSNKIQSI 164
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 48/251 (19%), Positives = 86/251 (34%), Gaps = 68/251 (27%)
Query: 155 IKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLR 214
IK+I + + +L +K + T EL +++++ ++ +++ + GI L
Sbjct: 14 IKQI-FSDDAFAETIKDNL-KKKSVTDA-VTQNELNSIDQIIANNS-DIKSVQ-GIQYLP 68
Query: 215 KLMYL---HNEGTD--------SLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKK 263
+ L N+ TD +L +L ++ L S++ L LK
Sbjct: 69 NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKD------------LKKLKS 116
Query: 264 LNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDED 323
L+ L I D++ L L L L D
Sbjct: 117 LS-LEHNGIS---DING--------LVHLPQLESLYLGNNKITD---------------- 148
Query: 324 ERLLEALGPPPNLKKLRIDEYRGRRN-VVPISWFMSLTNLRFLFLFGWRNC-EHLPPLGK 381
+ L L L +++ N + I LT L+ L+L N L L
Sbjct: 149 ---ITVLSRLTKLDTLSLED-----NQISDIVPLAGLTKLQNLYLSK--NHISDLRALAG 198
Query: 382 LPSLEYLEIEG 392
L +L+ LE+
Sbjct: 199 LKNLDVLELFS 209
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 8/87 (9%)
Query: 136 TCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLP-ETLCELYNLER 194
+ L G ++ +L L + Q+ ++ L L L L
Sbjct: 6 CPHGSSGLRCTRDGALD-----SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60
Query: 195 LNVDHCKNLRELPRGI-GKLRKLMYLH 220
L + LR + +L L+
Sbjct: 61 LTIVKSG-LRFVAPDAFHFTPRLSRLN 86
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-04
Identities = 33/179 (18%), Positives = 63/179 (35%), Gaps = 28/179 (15%)
Query: 132 FDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYN 191
L L++L LE N I I + L L+ L L K I + L L
Sbjct: 105 LKDLKKLKSLSLE-------HNGISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTK 154
Query: 192 LERLNVDHCKNLRELPRGIGKLRKLMYL---HNEGTDSLRYLPAGIGELIRLRSVRKFVV 248
L+ L+++ + + ++ + L KL L N +D + L L+++ +
Sbjct: 155 LDTLSLEDNQ-ISDIV-PLAGLTKLQNLYLSKNHISD--------LRALAGLKNLDVLEL 204
Query: 249 GG---GYDRACSLGSLKKLNLLR--DCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHF 302
+L N ++ D + +SD G+ + ++ + F
Sbjct: 205 FSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSF 263
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 7e-04
Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 71/247 (28%)
Query: 150 LYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRG 209
+ IK + I+ L ++ L L G K+ + + L L NL L +D K +++L
Sbjct: 50 ANNSDIKSV-QGIQYLPNVTKLFLNGN-KLTDI-KPLTNLKNLGWLFLDENK-IKDLS-S 104
Query: 210 IGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRD 269
+ L+KL L E + + L L+ L L +
Sbjct: 105 LKDLKKLKSLSLEHN--------------GISDINGL---------VHLPQLESLY-LGN 140
Query: 270 CRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE-EDEDERLLE 328
+I D++ L + L L L +N+ D +
Sbjct: 141 NKIT---DITV--------LSRLTKLDTLSL---------------EDNQISD-----IV 169
Query: 329 ALGPPPNLKKLRIDEYRGRRNVVP-ISWFMSLTNLRFLFLFG----WRNCEHLPPLGKLP 383
L L+ L + + N + + L NL L LF + H L
Sbjct: 170 PLAGLTKLQNLYLSK-----NHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224
Query: 384 SLEYLEI 390
+++ +
Sbjct: 225 TVKNTDG 231
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 21/141 (14%)
Query: 95 ASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNF 154
ASVP I N + L + ++ P +FD L L+ L L +N
Sbjct: 32 ASVPAGIPTNAQILYL---------HDNQITKLEPGVFDSLINLKEL-------YLGSNQ 75
Query: 155 IKKIPTNI-EKLLHLKYLSLFGQKKIEKLPETLCE-LYNLERLNVDHCKNLRELPRGIGK 212
+ +P + + L L L L G ++ LP + + L +L+ L + C L ELPRGI +
Sbjct: 76 LGALPVGVFDSLTQLTVLDL-GTNQLTVLPSAVFDRLVHLKELFM-CCNKLTELPRGIER 133
Query: 213 LRKLMYLHNEGTDSLRYLPAG 233
L L +L + + L+ +P G
Sbjct: 134 LTHLTHLALD-QNQLKSIPHG 153
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 69/398 (17%), Positives = 124/398 (31%), Gaps = 67/398 (16%)
Query: 105 VKGLRGLRSL-LVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIE 163
R L+ L L ES S L D T L +L + + + ++++ T
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR-- 209
Query: 164 KLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRE------LPRGIGKLRKLM 217
+LK L L +EKL L LE L L + ++L
Sbjct: 210 -CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELR 268
Query: 218 YLHNEGTDSLRYLPAGIGELIRLRSVR----KFVVGGGYDRACSLGSLKKLNLLRDCRIR 273
L YLPA RL ++ C L++L +L
Sbjct: 269 CLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDA 328
Query: 274 GLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPP 333
GL ++ K L +L + + A ++ L+
Sbjct: 329 GLEVLASTC----------KDLRELRVFPSEPFVMEPNVALT-------EQGLVSVSMGC 371
Query: 334 PNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGM 393
P L+ + + + +TN + + RN P++ + +
Sbjct: 372 PKLESV-------------LYFCRQMTNAALITIA--RNR---------PNMTRFRLCII 407
Query: 394 KSVKRVGNEFLGVESDTDGSSVIA--FPKLKHLTFWVMNALEELDFETAIKREIIIMPRL 451
+ ++L +E G I L+ L +L L + + ++
Sbjct: 408 ---EPKAPDYLTLEPLDIGFGAIVEHCKDLRRL------SLSGLLTDKVFEYIGTYAKKM 458
Query: 452 SSLTIWSCRKLKALPDHLLQK-TTLQKLHIRRCPILEE 488
L++ H+L +L+KL IR CP ++
Sbjct: 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 15/114 (13%)
Query: 126 EILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI---EKLLHLKYLSLFGQKKIEKL 182
+ +FDKLT L L L +N + LKYL L + +
Sbjct: 42 SLPHGVFDKLTQLTKLSL-------SSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITM 93
Query: 183 PETLCELYNLERLNVDHCKNLRELPRG--IGKLRKLMYLHNEGTDSLRYLPAGI 234
L LE L+ H NL+++ LR L+YL T R GI
Sbjct: 94 SSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGI 145
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 4e-04
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 134 KLTCLRALK--LEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYN 191
LT L L+ L V L N ++ +P + L L+ L +E + + L
Sbjct: 452 DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDG-VANLPR 509
Query: 192 LERLNVDHCK--NLRELPRGIGKLRKLMYLHNEG 223
L+ L + + + + + +L+ L+ +G
Sbjct: 510 LQELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQG 542
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 8e-04
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 132 FDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYN 191
F++ + A + E E I+K+ + L K+L+L IEK+ +L + N
Sbjct: 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLAL-STNNIEKI-SSLSGMEN 71
Query: 192 LERLNVDHCKNLRELPRGIGKLRKLMYLH 220
L L++ ++++ L L
Sbjct: 72 LRILSLGRN-LIKKIENLDAVADTLEELW 99
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 8e-04
Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 44/182 (24%)
Query: 328 EALGPPPNLKKLRIDEYRGRRN---VVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKL 382
A L++L + N +P F + +L L L + E++ L
Sbjct: 141 GAFEYLSKLRELWLR-----NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195
Query: 383 PSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHL-------------TFWVM 429
+L+YL + + + T L+ L +F +
Sbjct: 196 FNLKYLNLG--------MCNIKDMPNLTP------LVGLEELEMSGNHFPEIRPGSFHGL 241
Query: 430 NALEELDFE----TAIKREIII-MPRLSSLTIWSCRKLKALPDHLLQK-TTLQKLHIRRC 483
++L++L + I+R + L L + L +LP L L +LH+
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHN 300
Query: 484 PI 485
P
Sbjct: 301 PW 302
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 510 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.97 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.97 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.97 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.97 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.96 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.96 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.96 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.96 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.96 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.96 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.96 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.96 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.96 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.96 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.95 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.95 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.95 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.95 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.95 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.95 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.95 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.95 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.95 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.94 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.94 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.94 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.94 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.94 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.94 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.94 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.93 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.93 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.93 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.92 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.92 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.92 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.91 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.91 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.91 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.91 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.9 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.9 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.9 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.89 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.88 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.88 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.88 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.87 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.87 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.86 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.86 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.85 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.84 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.84 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.84 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.84 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.84 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.84 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.84 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.83 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.83 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.83 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.81 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.81 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.8 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.79 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.79 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.78 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.78 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.76 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.76 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.75 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.73 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.72 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.72 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.72 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.71 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.71 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.7 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.7 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.7 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.7 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.69 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.69 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.68 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.68 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.66 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.65 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.65 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.63 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.62 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.61 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.6 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.6 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.58 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.57 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.57 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.55 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.55 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.54 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.53 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.53 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.52 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.51 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.51 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.5 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.49 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.49 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.48 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.48 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.47 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.47 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.47 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.46 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.46 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.45 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.44 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.44 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.44 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.4 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.39 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.38 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.36 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.34 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.33 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.32 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.32 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.31 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.28 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.28 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.27 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.21 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.12 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.12 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.12 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.05 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.02 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.01 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.95 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.89 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.76 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.67 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.67 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.58 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.56 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.46 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.42 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.42 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.28 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.26 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 98.2 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.2 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.05 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.99 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.97 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.88 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.88 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.79 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 95.74 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.04 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 94.96 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 92.75 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 92.63 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 85.07 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 84.47 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=297.97 Aligned_cols=388 Identities=19% Similarity=0.181 Sum_probs=252.2
Q ss_pred CceeEEEEEeecCC-CccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccc-ccc
Q 010462 82 TKILHLMLTLHRGA-SVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIK-KIP 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~lp 159 (510)
..+++|.+.++.+. ..+..+. ..+++|+.|++++|. +....|..|..+++|++|+++ +|.+. .+|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~---~~~~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L~-------~n~l~~~ip 335 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLS---GACDTLTGLDLSGNH---FYGAVPPFFGSCSLLESLALS-------SNNFSGELP 335 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSC---TTCTTCSEEECCSSE---EEECCCGGGGGCTTCCEEECC-------SSEEEEECC
T ss_pred CCCCEEECcCCccCCccCHHHH---hhcCcCCEEECcCCc---CCCccchHHhcCCCccEEECC-------CCcccCcCC
Confidence 55666666665544 2333333 124777777777776 444466667777888888887 77665 666
Q ss_pred cc-ccccCccceEeccCCCCccccchhhhccc-ccceeccCCCCccccCchhhhc--cccCceeecCCCccccccccccc
Q 010462 160 TN-IEKLLHLKYLSLFGQKKIEKLPETLCELY-NLERLNVDHCKNLRELPRGIGK--LRKLMYLHNEGTDSLRYLPAGIG 235 (510)
Q Consensus 160 ~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~L~~~~~~~~lp~~~~~--l~~L~~L~l~~~~~~~~~p~~l~ 235 (510)
.. +.++++|++|++++|.+.+.+|..+..++ +|++|++++|.....+|..+.. +++|++|++++|.....+|..++
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 415 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415 (768)
T ss_dssp HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG
T ss_pred HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh
Confidence 54 77777888888887774446777777776 7777777777755566666665 67788888887766667777788
Q ss_pred CcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccC
Q 010462 236 ELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGR 315 (510)
Q Consensus 236 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 315 (510)
.+++|+.|++..+... ...+..+..+++|+.|++.+.... ...+..+..+++|+.|++++|.
T Consensus 416 ~l~~L~~L~Ls~N~l~---~~~p~~l~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~N~----------- 477 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLS---GTIPSSLGSLSKLRDLKLWLNMLE----GEIPQELMYVKTLETLILDFND----------- 477 (768)
T ss_dssp GCTTCCEEECCSSEEE---SCCCGGGGGCTTCCEEECCSSCCC----SCCCGGGGGCTTCCEEECCSSC-----------
T ss_pred cCCCCCEEECcCCccc---CcccHHHhcCCCCCEEECCCCccc----CcCCHHHcCCCCceEEEecCCc-----------
Confidence 8888888887766554 334556677777777777664321 2233456677888888888876
Q ss_pred CCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 316 RENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
.....+..+..+++|+.|++++|..... +| .++..+++|++|++++|...+.+|. ++.+++|+.|+|++|.
T Consensus 478 ------l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 478 ------LTGEIPSGLSNCTNLNWISLSNNRLTGE-IP-KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp ------CCSCCCGGGGGCTTCCEEECCSSCCCSC-CC-GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred ------ccCcCCHHHhcCCCCCEEEccCCccCCc-CC-hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 2233455677788888888888887743 77 7888888888888888877767776 7888888888888876
Q ss_pred ccEEecccccCCCCC----------------------------------------------------------CCCCccc
Q 010462 395 SVKRVGNEFLGVESD----------------------------------------------------------TDGSSVI 416 (510)
Q Consensus 395 ~l~~~~~~~~~~~~~----------------------------------------------------------~~~~~~~ 416 (510)
....+|..++..... .....+.
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 333444332210000 0001123
Q ss_pred cccccccccccccc-------------c-----ccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEE
Q 010462 417 AFPKLKHLTFWVMN-------------A-----LEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKL 478 (510)
Q Consensus 417 ~~~~L~~L~l~~~~-------------~-----L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 478 (510)
.+++|+.|+++++. . |....+.+.+|..++.+++|+.|++++|...+.+|..+..+++|+.|
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 34566666665542 1 12223556788888999999999999998777899999999999999
Q ss_pred EEcCCcc-----------------------hHH----HhhccCCCCCCccCCCCccc
Q 010462 479 HIRRCPI-----------------------LEE----RCRKETGEDWPKIRHIPEIS 508 (510)
Q Consensus 479 ~l~~c~~-----------------------l~~----~~~~~~~~~~~~~~~i~~~~ 508 (510)
++++|+. +.. .|....+++|++++|+|++.
T Consensus 710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred ECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 9988742 111 35667788999999999874
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-31 Score=274.00 Aligned_cols=346 Identities=13% Similarity=0.114 Sum_probs=271.5
Q ss_pred CceeEEEEEeecCCCc-------ccc-------cccccc--CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecc
Q 010462 82 TKILHLMLTLHRGASV-------PIP-------IWDNVK--GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEV 145 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~-------~~~-------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 145 (510)
.+++.|++.++.+... +.. +++.+. ++++|++|++++|. ....+|..|..+++|++|+++
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~Ls- 281 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP---NLTKLPTFLKALPEMQLINVA- 281 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT---TCSSCCTTTTTCSSCCEEECT-
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc---CCccChHHHhcCCCCCEEECc-
Confidence 7899999999987751 000 344455 89999999999997 444478889999999999999
Q ss_pred ccccccccc-cc--ccccccccc------CccceEeccCCCCccccch--hhhcccccceeccCCCCccccCchhhhccc
Q 010462 146 REQGLYTNF-IK--KIPTNIEKL------LHLKYLSLFGQKKIEKLPE--TLCELYNLERLNVDHCKNLRELPRGIGKLR 214 (510)
Q Consensus 146 ~~~~~~~~~-~~--~lp~~i~~l------~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~ 214 (510)
+|. +. .+|..++++ ++|++|++++|. +..+|. .++++++|++|++++|.....+| .++.++
T Consensus 282 ------~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 282 ------CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp ------TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred ------CCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 887 76 489888887 999999999999 779998 89999999999999999444999 899999
Q ss_pred cCceeecCCCcccccccccccCccc-ccccCcEEEeCccCCccCccccccc--ccCCCceecCcccCCChhhhhHhhcc-
Q 010462 215 KLMYLHNEGTDSLRYLPAGIGELIR-LRSVRKFVVGGGYDRACSLGSLKKL--NLLRDCRIRGLGDVSDAGEARRAELE- 290 (510)
Q Consensus 215 ~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~l--~~L~~l~i~~~~~~~~~~~~~~~~l~- 290 (510)
+|++|++++|.. ..+|..++.+++ |+.|++..+.... ....+..+ ++|+.+++.+..-. ...+..+.
T Consensus 354 ~L~~L~L~~N~l-~~lp~~l~~l~~~L~~L~Ls~N~l~~----lp~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~ 424 (636)
T 4eco_A 354 KLASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNKLKY----IPNIFDAKSVSVMSAIDFSYNEIG----SVDGKNFDP 424 (636)
T ss_dssp EESEEECCSSEE-EECCTTSEEECTTCCEEECCSSCCSS----CCSCCCTTCSSCEEEEECCSSCTT----TTTTCSSCT
T ss_pred CCCEEECCCCcc-ccccHhhhhhcccCcEEEccCCcCcc----cchhhhhcccCccCEEECcCCcCC----Ccchhhhcc
Confidence 999999999954 589999999999 9999998877653 22333333 36777777763221 22223333
Q ss_pred ------CCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhc-cCCCCCCccEEEEeecCCccCCCchhHHhh-----
Q 010462 291 ------KKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLE-ALGPPPNLKKLRIDEYRGRRNVVPISWFMS----- 358 (510)
Q Consensus 291 ------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~----- 358 (510)
.+++|+.|++++|... .++. .+..+++|+.|++++|.+.. +|..++..
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~------------------~lp~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~~~~~~ 484 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQIS------------------KFPKELFSTGSPLSSINLMGNMLTE--IPKNSLKDENENF 484 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCC------------------SCCTHHHHTTCCCSEEECCSSCCSB--CCSSSSEETTEEC
T ss_pred cccccccCCCCCEEECcCCccC------------------cCCHHHHccCCCCCEEECCCCCCCC--cCHHHhccccccc
Confidence 5678999999998732 1222 23357899999999999886 77333332
Q ss_pred --hhcccceeccCccCCCcCCC-CC--CCCccceeeccCccccEEecccccCCCCCCCCCcccccccccccccccccccc
Q 010462 359 --LTNLRFLFLFGWRNCEHLPP-LG--KLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALE 433 (510)
Q Consensus 359 --l~~L~~L~L~~~~~~~~l~~-~~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 433 (510)
+++|+.|++++|... .+|. +. .+++|+.|+|++|. ++.+|.. +..+++|+.|++++++.+.
T Consensus 485 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~------------~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKFPTQ------------PLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp TTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSCCCG------------GGGCSSCCEEECCSCBCTT
T ss_pred cccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC-CCCcChh------------hhcCCCCCEEECCCCcccc
Confidence 339999999999655 6776 55 89999999999987 4335433 3478999999999887777
Q ss_pred ccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcc
Q 010462 434 ELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 434 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 485 (510)
...+.+.+|..+..+++|+.|++++|.. +.+|..+. ++|+.|++++|+.
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTT
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCC
Confidence 7777788899999999999999999965 88998765 8999999999974
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=268.80 Aligned_cols=320 Identities=13% Similarity=0.130 Sum_probs=231.9
Q ss_pred hhHhhhcCCceeEEEecccccccccccccc------------------cccccc--ccCccceEeccCCCCccccchhhh
Q 010462 128 LPQLFDKLTCLRALKLEVREQGLYTNFIKK------------------IPTNIE--KLLHLKYLSLFGQKKIEKLPETLC 187 (510)
Q Consensus 128 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------------------lp~~i~--~l~~L~~L~l~~~~~~~~lp~~~~ 187 (510)
+|..|..+++|++|+++ +|.+.. +|..++ ++++|++|++++|.+.+.+|..++
T Consensus 198 ip~~l~~l~~L~~L~Ls-------~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMG-------NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp ECGGGGGCTTCCEEEEE-------SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCHHHhcccCCCEEECc-------CCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 67778899999999999 888777 899988 999999999999987788898899
Q ss_pred cccccceeccCCCC-ccc-cCchhhhcc------ccCceeecCCCcccccccc--cccCcccccccCcEEEeCccCCccC
Q 010462 188 ELYNLERLNVDHCK-NLR-ELPRGIGKL------RKLMYLHNEGTDSLRYLPA--GIGELIRLRSVRKFVVGGGYDRACS 257 (510)
Q Consensus 188 ~l~~L~~L~L~~~~-~~~-~lp~~~~~l------~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~~~~~~~~~ 257 (510)
++++|++|++++|. ... .+|..++++ ++|++|++++|... .+|. .++.+++|+.|++..+.... ..
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g---~i 346 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEG---KL 346 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEE---EC
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCcc---ch
Confidence 99999999999997 444 688888877 89999999998554 8888 88899999999888776651 22
Q ss_pred cccccccccCCCceecCcccCCChhhhhHhhccCCCC-CCeEEEEecCCCCCCcccccCC-------C-CcchhhHhhhc
Q 010462 258 LGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKS-LLKLGLHFGHSRDGDEERAGRR-------E-NEEDEDERLLE 328 (510)
Q Consensus 258 ~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~ 328 (510)
. .+..+++|+.|++.+..-. ..+..+..+++ |+.|++++|.....+....... . .........+.
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQIT-----EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEE-----ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred h-hhCCCCCCCEEECCCCccc-----cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 2 6677777777777653211 22334566666 7777777776442221100000 0 00012223344
Q ss_pred cCC-------CCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CC-------CCCccceeeccC
Q 010462 329 ALG-------PPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LG-------KLPSLEYLEIEG 392 (510)
Q Consensus 329 ~l~-------~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~-------~l~~L~~L~L~~ 392 (510)
.+. .+++|+.|++++|.+.. +|..++..+++|++|++++|... .+|. +. ++++|++|+|++
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISK--FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCS--CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred hhcccccccccCCCCCEEECcCCccCc--CCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcC
Confidence 444 56789999999998886 77455567899999999998655 5654 22 233899999998
Q ss_pred ccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeec------cCcccccCC
Q 010462 393 MKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIW------SCRKLKALP 466 (510)
Q Consensus 393 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~------~c~~l~~lp 466 (510)
|. ++.++..+.. ..+++|+.|+++++. ++ + +|..+..+++|+.|+++ +|...+.+|
T Consensus 498 N~-l~~lp~~~~~----------~~l~~L~~L~Ls~N~-l~-----~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 498 NK-LTKLSDDFRA----------TTLPYLVGIDLSYNS-FS-----K-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp SC-CCBCCGGGST----------TTCTTCCEEECCSSC-CS-----S-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred Cc-CCccChhhhh----------ccCCCcCEEECCCCC-CC-----C-cChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 87 5555543320 268899999988875 43 2 56667789999999995 455567789
Q ss_pred cccCCCCCCcEEEEcCCcc
Q 010462 467 DHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 467 ~~~~~l~~L~~L~l~~c~~ 485 (510)
..+..+++|+.|++++|..
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp TTGGGCSSCCEEECCSSCC
T ss_pred HHHhcCCCCCEEECCCCcC
Confidence 8899999999999999965
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=273.80 Aligned_cols=348 Identities=15% Similarity=0.137 Sum_probs=268.0
Q ss_pred CceeEEEEEeecCCCc-------cc-------ccccccc--CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecc
Q 010462 82 TKILHLMLTLHRGASV-------PI-------PIWDNVK--GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEV 145 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~-------~~-------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 145 (510)
.+++.|.+.++.+... +. .+++.+. ++++|+.|++++|. ....+|..|..+++|++|+++
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~---l~~~iP~~l~~L~~L~~L~Ls- 523 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP---NMTQLPDFLYDLPELQSLNIA- 523 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT---TCCSCCGGGGGCSSCCEEECT-
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC---CCccChHHHhCCCCCCEEECc-
Confidence 7899999999988750 00 1333334 89999999999997 344478889999999999999
Q ss_pred ccccccccc-cc--cccccccccC-------ccceEeccCCCCccccch--hhhcccccceeccCCCCccccCchhhhcc
Q 010462 146 REQGLYTNF-IK--KIPTNIEKLL-------HLKYLSLFGQKKIEKLPE--TLCELYNLERLNVDHCKNLRELPRGIGKL 213 (510)
Q Consensus 146 ~~~~~~~~~-~~--~lp~~i~~l~-------~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~~~~~l 213 (510)
+|. +. .+|..++++. +|++|++++|. +..+|. .++++++|++|++++|. +..+| .++.+
T Consensus 524 ------~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L 594 (876)
T 4ecn_A 524 ------CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTN 594 (876)
T ss_dssp ------TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTT
T ss_pred ------CCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCC
Confidence 886 66 4788777766 99999999999 779999 89999999999999999 66999 79999
Q ss_pred ccCceeecCCCcccccccccccCccc-ccccCcEEEeCccCCccCcccccccc--cCCCceecCcccCCChhhhhHhhcc
Q 010462 214 RKLMYLHNEGTDSLRYLPAGIGELIR-LRSVRKFVVGGGYDRACSLGSLKKLN--LLRDCRIRGLGDVSDAGEARRAELE 290 (510)
Q Consensus 214 ~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~l~--~L~~l~i~~~~~~~~~~~~~~~~l~ 290 (510)
++|+.|++++|.. ..+|..+..+++ |+.|++..+.... ....+..+. +|+.|++.+..-.... ......+.
T Consensus 595 ~~L~~L~Ls~N~l-~~lp~~l~~l~~~L~~L~Ls~N~L~~----lp~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~ 668 (876)
T 4ecn_A 595 VKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKY----IPNIFNAKSVYVMGSVDFSYNKIGSEG-RNISCSMD 668 (876)
T ss_dssp SEESEEECCSSCC-SCCCTTSCEECTTCCEEECCSSCCCS----CCSCCCTTCSSCEEEEECCSSCTTTTS-SSCSSCTT
T ss_pred CcceEEECcCCcc-ccchHHHhhccccCCEEECcCCCCCc----CchhhhccccCCCCEEECcCCcCCCcc-ccchhhhc
Confidence 9999999999965 489999999999 9999998877653 223333333 3777777753221110 11111122
Q ss_pred --CCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccC-CCCCCccEEEEeecCCccCCCchhHHh-------hhh
Q 010462 291 --KKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEAL-GPPPNLKKLRIDEYRGRRNVVPISWFM-------SLT 360 (510)
Q Consensus 291 --~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~p~~~~~-------~l~ 360 (510)
..++|+.|++++|... .++..+ ..+++|+.|++++|.+.. +|...+. +++
T Consensus 669 ~~~~~~L~~L~Ls~N~L~------------------~lp~~~~~~l~~L~~L~Ls~N~L~~--ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQ------------------KFPTELFATGSPISTIILSNNLMTS--IPENSLKPKDGNYKNTY 728 (876)
T ss_dssp TCCCCCEEEEECCSSCCC------------------SCCHHHHHTTCCCSEEECCSCCCSC--CCTTSSSCTTSCCTTGG
T ss_pred cccCCCcCEEEccCCcCC------------------ccCHHHHccCCCCCEEECCCCcCCc--cChHHhccccccccccC
Confidence 3458999999998722 222222 367899999999999886 7722222 344
Q ss_pred cccceeccCccCCCcCCC-CC--CCCccceeeccCccccEEecccccCCCCCCCCCcccccccccccccccccccccccc
Q 010462 361 NLRFLFLFGWRNCEHLPP-LG--KLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDF 437 (510)
Q Consensus 361 ~L~~L~L~~~~~~~~l~~-~~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~ 437 (510)
+|+.|+|++|... .+|. +. .+++|+.|+|++|. +..+|.. +..+++|+.|++++++.+....+
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~------------l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQ------------PLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSCCCG------------GGGCTTCCEEECCCCBCTTCCBC
T ss_pred CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-CCccchh------------hhcCCCCCEEECCCCCCcccccc
Confidence 9999999999555 6775 55 89999999999987 4434432 34789999999999887777777
Q ss_pred ccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcc
Q 010462 438 ETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 438 ~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 485 (510)
.+.+|..+..+++|+.|+|++|.. +.+|..+. ++|+.|+|++|+.
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred cccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 788899999999999999999965 89998765 7999999999974
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-31 Score=277.68 Aligned_cols=346 Identities=18% Similarity=0.106 Sum_probs=198.0
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccc-cccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIK-KIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~lp~ 160 (510)
.++++|.+.++.+..... .. .+++|++|++++|. +....|. +..+++|++|+++ +|.+. .+|.
T Consensus 178 ~~L~~L~Ls~n~l~~~~~-~~----~l~~L~~L~Ls~n~---l~~~~~~-l~~l~~L~~L~Ls-------~n~l~~~~~~ 241 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVD-VS----RCVNLEFLDVSSNN---FSTGIPF-LGDCSALQHLDIS-------GNKLSGDFSR 241 (768)
T ss_dssp TTCCEEECCSSEEESCCB-CT----TCTTCCEEECCSSC---CCSCCCB-CTTCCSCCEEECC-------SSCCCSCHHH
T ss_pred CCCCEEECCCCcccccCC-cc----cCCcCCEEECcCCc---CCCCCcc-cccCCCCCEEECc-------CCcCCCcccH
Confidence 455566655554432111 12 55555555555554 2222333 5555555555555 55443 3355
Q ss_pred cccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhcc-ccCceeecCCCcccccccccccCccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKL-RKLMYLHNEGTDSLRYLPAGIGELIR 239 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l-~~L~~L~l~~~~~~~~~p~~l~~l~~ 239 (510)
.++++++|++|++++|.+.+.+|.. .+++|++|++++|.....+|..+..+ ++|++|++++|.....+|..++.+++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred HHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 5555555555555555533333332 45555555555555333444444443 55555555555443344444555555
Q ss_pred ccccCcEEEeCccCCccCcc-cccccccCCCceecCcccC---CC------------------hhhhhHhhccC--CCCC
Q 010462 240 LRSVRKFVVGGGYDRACSLG-SLKKLNLLRDCRIRGLGDV---SD------------------AGEARRAELEK--KKSL 295 (510)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~-~l~~l~~L~~l~i~~~~~~---~~------------------~~~~~~~~l~~--~~~L 295 (510)
|+.|++..+.... .... .+..+++|+.|++.+.... +. .....+..+.. +++|
T Consensus 320 L~~L~L~~n~l~~---~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 320 LESLALSSNNFSG---ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CCEEECCSSEEEE---ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred ccEEECCCCcccC---cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 5555544433321 1111 1334444444444432110 00 00001111111 4456
Q ss_pred CeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCc
Q 010462 296 LKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEH 375 (510)
Q Consensus 296 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~ 375 (510)
+.|+++.|. .....+..+..+++|+.|++++|..... .| ..+..+++|+.|++++|...+.
T Consensus 397 ~~L~L~~n~-----------------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p-~~l~~l~~L~~L~L~~n~l~~~ 457 (768)
T 3rgz_A 397 QELYLQNNG-----------------FTGKIPPTLSNCSELVSLHLSFNYLSGT-IP-SSLGSLSKLRDLKLWLNMLEGE 457 (768)
T ss_dssp CEEECCSSE-----------------EEEECCGGGGGCTTCCEEECCSSEEESC-CC-GGGGGCTTCCEEECCSSCCCSC
T ss_pred cEEECCCCc-----------------cccccCHHHhcCCCCCEEECcCCcccCc-cc-HHHhcCCCCCEEECCCCcccCc
Confidence 666665554 2234556667778888888888876642 56 6777888888888888876666
Q ss_pred CCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCccccee
Q 010462 376 LPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSL 454 (510)
Q Consensus 376 l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L 454 (510)
+|. ++.+++|++|+|++|.....++.. +..+++|+.|++++|. +.+..|..++.+++|+.|
T Consensus 458 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~------------l~~l~~L~~L~L~~N~------l~~~~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 458 IPQELMYVKTLETLILDFNDLTGEIPSG------------LSNCTNLNWISLSNNR------LTGEIPKWIGRLENLAIL 519 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGG------------GGGCTTCCEEECCSSC------CCSCCCGGGGGCTTCCEE
T ss_pred CCHHHcCCCCceEEEecCCcccCcCCHH------------HhcCCCCCEEEccCCc------cCCcCChHHhcCCCCCEE
Confidence 665 777888888888887632223222 4477889999888775 335567788899999999
Q ss_pred eeccCcccccCCcccCCCCCCcEEEEcCCcc
Q 010462 455 TIWSCRKLKALPDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 455 ~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 485 (510)
++++|...+.+|..+..+++|+.|++++|+.
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 9999988778999999999999999999964
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-30 Score=268.02 Aligned_cols=319 Identities=13% Similarity=0.142 Sum_probs=230.8
Q ss_pred hhHhhhcCCceeEEEecccccccccccccc------------------cccccc--ccCccceEeccCCCCccccchhhh
Q 010462 128 LPQLFDKLTCLRALKLEVREQGLYTNFIKK------------------IPTNIE--KLLHLKYLSLFGQKKIEKLPETLC 187 (510)
Q Consensus 128 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------------------lp~~i~--~l~~L~~L~l~~~~~~~~lp~~~~ 187 (510)
+|..|..+++|++|+|+ +|.+.. +|..++ ++++|++|++++|.+.+.+|..++
T Consensus 440 IP~~l~~L~~L~~L~Ls-------~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFA-------NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp ECGGGGGCTTCCEEEEE-------SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred hhHHHhcCCCCCEEECc-------CCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 56678899999999999 888777 888887 899999999999987888999899
Q ss_pred cccccceeccCCCC-ccc-cCchhhhccc-------cCceeecCCCcccccccc--cccCcccccccCcEEEeCccCCcc
Q 010462 188 ELYNLERLNVDHCK-NLR-ELPRGIGKLR-------KLMYLHNEGTDSLRYLPA--GIGELIRLRSVRKFVVGGGYDRAC 256 (510)
Q Consensus 188 ~l~~L~~L~L~~~~-~~~-~lp~~~~~l~-------~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~~~~~~~~ 256 (510)
++++|++|++++|. ... .+|..+++++ +|++|++++|... .+|. .++.+++|+.|++..+....
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~---- 587 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH---- 587 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCB----
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCccc----
Confidence 99999999999987 444 5888777776 8999999998554 8888 88889999999887766542
Q ss_pred CcccccccccCCCceecCcccCCChhhhhHhhccCCCC-CCeEEEEecCCCCCCcccccCC-------CCcch-hhHh--
Q 010462 257 SLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKS-LLKLGLHFGHSRDGDEERAGRR-------ENEED-EDER-- 325 (510)
Q Consensus 257 ~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~-------~~~~~-~~~~-- 325 (510)
. +.+..+++|+.|++.+..-. ..+..+..+++ |+.|++++|.....+....... ..... ....
T Consensus 588 l-p~~~~L~~L~~L~Ls~N~l~-----~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 588 L-EAFGTNVKLTDLKLDYNQIE-----EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp C-CCCCTTSEESEEECCSSCCS-----CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred c-hhhcCCCcceEEECcCCccc-----cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence 2 26677778888877763321 22334666777 8888888876542221100000 00000 0010
Q ss_pred -hhccCC--CCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-C-C-------CCCccceeeccCc
Q 010462 326 -LLEALG--PPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-L-G-------KLPSLEYLEIEGM 393 (510)
Q Consensus 326 -~~~~l~--~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~-~-------~l~~L~~L~L~~~ 393 (510)
++..+. ..++|+.|++++|.+.. +|..++..+++|+.|+|++|... .+|. . . ++++|+.|+|++|
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred cchhhhccccCCCcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC
Confidence 111122 33589999999999886 88444558999999999999554 5554 2 2 3449999999998
Q ss_pred cccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeecc------CcccccCCc
Q 010462 394 KSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWS------CRKLKALPD 467 (510)
Q Consensus 394 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~------c~~l~~lp~ 467 (510)
. +..++..+.. ..+++|+.|+++++. ++. +|..+..+++|+.|+|++ |...+.+|.
T Consensus 739 ~-L~~lp~~l~~----------~~l~~L~~L~Ls~N~-L~~------lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 739 K-LTSLSDDFRA----------TTLPYLSNMDVSYNC-FSS------FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp C-CCCCCGGGST----------TTCTTCCEEECCSSC-CSS------CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred C-CccchHHhhh----------ccCCCcCEEEeCCCC-CCc------cchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence 6 5566543320 268999999998875 433 466677899999999977 555677898
Q ss_pred ccCCCCCCcEEEEcCCcc
Q 010462 468 HLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 468 ~~~~l~~L~~L~l~~c~~ 485 (510)
.+..+++|+.|++++|..
T Consensus 801 ~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TGGGCSSCCEEECCSSCC
T ss_pred HHhcCCCCCEEECCCCCC
Confidence 999999999999999965
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-29 Score=251.97 Aligned_cols=338 Identities=17% Similarity=0.116 Sum_probs=224.2
Q ss_pred CceeEEEEEeecCCCcc-ccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVP-IPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~ 160 (510)
.++++|++.++.+...+ ..+. .+++|++|++++|+ +..+.|..|..+++|++|+++ +|.+..+|.
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~N~l~~lp~ 86 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDIL----SLSKLRILIISHNR---IQYLDISVFKFNQELEYLDLS-------HNKLVKISC 86 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHT----TCTTCCEEECCSSC---CCEEEGGGGTTCTTCCEEECC-------SSCCCEEEC
T ss_pred ccccEEECCCCcccccChhhcc----ccccccEEecCCCc---cCCcChHHhhcccCCCEEecC-------CCceeecCc
Confidence 78999999999887644 3344 89999999999998 556568889999999999999 899989987
Q ss_pred cccccCccceEeccCCCCccc--cchhhhcccccceeccCCCCccccCchhhhccccC--ceeecCCCcc--cccccccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEK--LPETLCELYNLERLNVDHCKNLRELPRGIGKLRKL--MYLHNEGTDS--LRYLPAGI 234 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~p~~l 234 (510)
. .+++|++|++++|. +.. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|.. ....|..+
T Consensus 87 ~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l 160 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160 (520)
T ss_dssp C--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT
T ss_pred c--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccccccccccccc
Confidence 6 89999999999998 554 67889999999999999988 443 346777777 8888888755 33444433
Q ss_pred cC--------------------------cccccccCcEEEe---------------------------------------
Q 010462 235 GE--------------------------LIRLRSVRKFVVG--------------------------------------- 249 (510)
Q Consensus 235 ~~--------------------------l~~L~~L~l~~~~--------------------------------------- 249 (510)
+. +++|+.|++..+.
T Consensus 161 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~ 240 (520)
T 2z7x_B 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240 (520)
T ss_dssp TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHH
T ss_pred cccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHH
Confidence 33 4444555444432
Q ss_pred ------------------CccCCccCcccc-----cccccCCCceecCcccCCChh-hhhHhh-----------------
Q 010462 250 ------------------GGYDRACSLGSL-----KKLNLLRDCRIRGLGDVSDAG-EARRAE----------------- 288 (510)
Q Consensus 250 ------------------~~~~~~~~~~~l-----~~l~~L~~l~i~~~~~~~~~~-~~~~~~----------------- 288 (510)
.. +.....+ ..+++|+.+++..... ... ......
T Consensus 241 ~~~~~~~~L~~L~l~~n~l~---~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~ 315 (520)
T 2z7x_B 241 LQLVWHTTVWYFSISNVKLQ---GQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV 315 (520)
T ss_dssp HHHHHTSSCSEEEEEEEEEE---SCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHhhhCcccEEEeeccccc---CccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc
Confidence 11 0111111 2222233222221110 000 000000
Q ss_pred ----ccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccC-CCchhHHhhhhccc
Q 010462 289 ----LEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRN-VVPISWFMSLTNLR 363 (510)
Q Consensus 289 ----l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~p~~~~~~l~~L~ 363 (510)
...+++|+.|++++|. .....+..+..+++|+.|++++|.+..- .+| .++..+++|+
T Consensus 316 ~~~~~~~l~~L~~L~Ls~n~-----------------l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~-~~~~~l~~L~ 377 (520)
T 2z7x_B 316 HMLCPSKISPFLHLDFSNNL-----------------LTDTVFENCGHLTELETLILQMNQLKELSKIA-EMTTQMKSLQ 377 (520)
T ss_dssp CCCCCSSCCCCCEEECCSSC-----------------CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH-HHHTTCTTCC
T ss_pred cccchhhCCcccEEEeECCc-----------------cChhhhhhhccCCCCCEEEccCCccCccccch-HHHhhCCCCC
Confidence 0234445555554443 2233455667778888888888877640 033 4566788888
Q ss_pred ceeccCccCCCcCCC--CCCCCccceeeccCccccEEecccccCCCCCCCCCccccc-cccccccccccccccccccccc
Q 010462 364 FLFLFGWRNCEHLPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAF-PKLKHLTFWVMNALEELDFETA 440 (510)
Q Consensus 364 ~L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~ 440 (510)
+|++++|.....+|. +..+++|++|++++|.....++ ..+ ++|+.|+++++. ++ .
T Consensus 378 ~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------~~l~~~L~~L~Ls~N~-l~------~ 435 (520)
T 2z7x_B 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF---------------RCLPPRIKVLDLHSNK-IK------S 435 (520)
T ss_dssp EEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG---------------GSCCTTCCEEECCSSC-CC------C
T ss_pred EEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh---------------hhhcccCCEEECCCCc-cc------c
Confidence 888888866554553 6777888888888876211111 123 688888888874 44 3
Q ss_pred cccccccCcccceeeeccCcccccCCcc-cCCCCCCcEEEEcCCcc
Q 010462 441 IKREIIIMPRLSSLTIWSCRKLKALPDH-LLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 441 ~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~ 485 (510)
+|..+..+++|+.|++++| .++.+|.. +..+++|+.|++++|+.
T Consensus 436 ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 436 IPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 4555568999999999999 56688876 78899999999999975
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=240.54 Aligned_cols=303 Identities=17% Similarity=0.200 Sum_probs=196.4
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+++|+.|++.++. +.. ++. +..+++|++|+++ ++.+..+|. +..+++|++|++++|. ++.+|. +
T Consensus 42 ~l~~L~~L~l~~~~---i~~-~~~-~~~~~~L~~L~l~-------~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~-~ 106 (347)
T 4fmz_A 42 ELESITKLVVAGEK---VAS-IQG-IEYLTNLEYLNLN-------GNQITDISP-LSNLVKLTNLYIGTNK-ITDISA-L 106 (347)
T ss_dssp HHTTCSEEECCSSC---CCC-CTT-GGGCTTCCEEECC-------SSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-G
T ss_pred hcccccEEEEeCCc---ccc-chh-hhhcCCccEEEcc-------CCccccchh-hhcCCcCCEEEccCCc-ccCchH-H
Confidence 45566666666655 222 222 5556666666666 555555544 5556666666666665 555543 5
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
.++++|++|++++|. +..+|. +..+++|++|++++|.....++. +..+++|+.|++..+.... ...+..+++
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~-----~~~~~~l~~ 178 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD-----VTPIANLTD 178 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC-----CGGGGGCTT
T ss_pred cCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC-----chhhccCCC
Confidence 566666666666665 444544 55666666666666644443332 5555666666555444332 122555556
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRG 346 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (510)
|+.+++.++.. ... ..+..+++|+.+++++|.... . ..+..+++|+.|++++|..
T Consensus 179 L~~L~l~~n~l-~~~-----~~~~~l~~L~~L~l~~n~l~~------------------~-~~~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 179 LYSLSLNYNQI-EDI-----SPLASLTSLHYFTAYVNQITD------------------I-TPVANMTRLNSLKIGNNKI 233 (347)
T ss_dssp CSEEECTTSCC-CCC-----GGGGGCTTCCEEECCSSCCCC------------------C-GGGGGCTTCCEEECCSSCC
T ss_pred CCEEEccCCcc-ccc-----ccccCCCccceeecccCCCCC------------------C-chhhcCCcCCEEEccCCcc
Confidence 66666654322 111 115667888888888775211 1 1156678999999999998
Q ss_pred ccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccc
Q 010462 347 RRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTF 426 (510)
Q Consensus 347 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 426 (510)
.. ++ . +..+++|++|++++|. ...++.+..+++|++|++++|. +..++. +..+++|+.|++
T Consensus 234 ~~--~~-~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-------------~~~l~~L~~L~L 294 (347)
T 4fmz_A 234 TD--LS-P-LANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQ-ISDISV-------------LNNLSQLNSLFL 294 (347)
T ss_dssp CC--CG-G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGG-------------GGGCTTCSEEEC
T ss_pred CC--Cc-c-hhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCCc-cCCChh-------------hcCCCCCCEEEC
Confidence 87 77 4 7789999999999994 4556778899999999999986 444321 457899999999
Q ss_pred cccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCc
Q 010462 427 WVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 427 ~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 484 (510)
++|. +. +..+..++.+++|+.|++++|+ +..++. +..+++|+.|++++|+
T Consensus 295 ~~n~-l~-----~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 295 NNNQ-LG-----NEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CSSC-CC-----GGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred cCCc-CC-----CcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 8885 33 3445566789999999999996 555654 7779999999999996
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-29 Score=257.23 Aligned_cols=145 Identities=19% Similarity=0.156 Sum_probs=121.3
Q ss_pred CceeEEEEEeecCCCccc-cccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGASVPI-PIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-P 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p 159 (510)
..+++|++.++.+...+. .+. ++++|++|++++|. +..+.|..|..+++|++|+++ +|.+..+ |
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~---l~~i~~~~~~~l~~L~~L~Ls-------~n~l~~~~p 97 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFS----NFSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILT-------GNPIQSFSP 97 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TCCCCCCCT
T ss_pred CCcCEEECCCCCcCEeChhhcc----CCccCcEEeCCCCc---ccccCHHHhhchhhcCEeECC-------CCcccccCh
Confidence 789999999998876443 444 99999999999998 566577789999999999999 8988888 8
Q ss_pred ccccccCccceEeccCCCCccccc-hhhhcccccceeccCCCCccc-cCchhhhccccCceeecCCCcccccccccccCc
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLR-ELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGEL 237 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l 237 (510)
..|+++++|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+
T Consensus 98 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 176 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176 (606)
T ss_dssp TSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHH
T ss_pred hhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhh
Confidence 889999999999999999 66665 679999999999999998433 579999999999999999996655556666666
Q ss_pred cccc
Q 010462 238 IRLR 241 (510)
Q Consensus 238 ~~L~ 241 (510)
++|+
T Consensus 177 ~~L~ 180 (606)
T 3vq2_A 177 RENP 180 (606)
T ss_dssp HHCT
T ss_pred hccc
Confidence 6655
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-29 Score=257.46 Aligned_cols=151 Identities=17% Similarity=0.073 Sum_probs=121.8
Q ss_pred CceeEEEEEeecCCCc-cccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGASV-PIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-P 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p 159 (510)
..+++|++.++.+... +..+. ++++|++|++++|. +..+.|..|..+++|++|+++ +|.+..+ |
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~ 98 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFS----RLINLTFLDLTRCQ---IYWIHEDTFQSQHRLDTLVLT-------ANPLIFMAE 98 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTST----TCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TCCCSEECT
T ss_pred CcCcEEEccCCccCcCChhHhc----cCccceEEECCCCc---cceeChhhccCccccCeeeCC-------CCcccccCh
Confidence 7899999999988764 33444 99999999999998 556678889999999999999 8888776 7
Q ss_pred ccccccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccC--chhhhccccCceeecCCCcccccccccccC
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLREL--PRGIGKLRKLMYLHNEGTDSLRYLPAGIGE 236 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 236 (510)
..++++++|++|++++|. +..+ |..++++++|++|++++|. +..+ |. +..+++|++|++++|......|..++.
T Consensus 99 ~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSS 175 (606)
T ss_dssp TTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred hhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCccc-ccCCcccCEEEcccCcccccChhhhhh
Confidence 789999999999999999 6666 6678899999999999998 5544 44 455999999999998655555666778
Q ss_pred ccccc--ccCcEEEe
Q 010462 237 LIRLR--SVRKFVVG 249 (510)
Q Consensus 237 l~~L~--~L~l~~~~ 249 (510)
+++|+ .|++..+.
T Consensus 176 l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 176 LQQATNLSLNLNGND 190 (606)
T ss_dssp TTTCCSEEEECTTCC
T ss_pred hcccceeEEecCCCc
Confidence 88888 55554443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=251.47 Aligned_cols=364 Identities=16% Similarity=0.105 Sum_probs=256.8
Q ss_pred CceeEEEEEeecCCCc-cccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGASV-PIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-P 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p 159 (510)
+.+++|++.++.+... +..+. ++++|++|++++|.. ...+.+..|..+++|++|+++ +|.+..+ |
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~L~~n~~--~~~i~~~~~~~l~~L~~L~Ls-------~n~l~~~~~ 96 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFS----RLQDLQFLKVEQQTP--GLVIRNNTFRGLSSLIILKLD-------YNQFLQLET 96 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTS----SCTTCCEEECCCCST--TCEECTTTTTTCTTCCEEECT-------TCTTCEECT
T ss_pred CccCEEEecCCccCcCChhHhc----cCccccEEECcCCcc--cceECcccccccccCCEEeCC-------CCccCccCh
Confidence 7899999999988764 34444 999999999999972 123346678999999999999 8888777 7
Q ss_pred ccccccCccceEeccCCCCccccchh--hhcccccceeccCCCCccccCchh-hhccccCceeecCCCcccccccccccC
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKLPET--LCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPAGIGE 236 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~ 236 (510)
..++++++|++|++++|.+.+.+|.. +..+++|++|++++|......|.. +.++++|++|++++|......|..+..
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 88999999999999999933335554 889999999999999944444665 789999999999999766666766766
Q ss_pred c--ccccccCcEEEeCccCCccC-----cccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCC
Q 010462 237 L--IRLRSVRKFVVGGGYDRACS-----LGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGD 309 (510)
Q Consensus 237 l--~~L~~L~l~~~~~~~~~~~~-----~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 309 (510)
+ .+|+.|++..+......... ...+..+++|+.|++.+..... .............+|+.|+++.+......
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE-SMAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-HHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc-cchhhhhccccccceeeEeeccccccccc
Confidence 5 56777776665544311111 1123345677888887642211 11111122223478888988877532211
Q ss_pred cccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCcccee
Q 010462 310 EERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYL 388 (510)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L 388 (510)
.......... ...... ...++|+.|++++|..... .| .++..+++|++|++++|......|. ++.+++|++|
T Consensus 256 ~~~~~~~~~~----~~~~~~-~~~~~L~~L~l~~n~l~~~-~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 328 (455)
T 3v47_A 256 FGHTNFKDPD----NFTFKG-LEASGVKTCDLSKSKIFAL-LK-SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328 (455)
T ss_dssp TTCCSSCCCC----TTTTGG-GTTSCCCEEECCSSCCCEE-CT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cchhhhccCc----cccccc-ccccCceEEEecCcccccc-ch-hhcccCCCCCEEECCCCcccccChhHhcCcccCCEE
Confidence 1000000000 000000 1246899999999998762 45 7888999999999999976665564 8899999999
Q ss_pred eccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCCc-
Q 010462 389 EIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPD- 467 (510)
Q Consensus 389 ~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~- 467 (510)
+|++|. +..++... +..+++|+.|+++++. + .+..|..+..+++|+.|++++|. ++.+|.
T Consensus 329 ~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~Ls~N~-l-----~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 389 (455)
T 3v47_A 329 NLSQNF-LGSIDSRM-----------FENLDKLEVLDLSYNH-I-----RALGDQSFLGLPNLKELALDTNQ-LKSVPDG 389 (455)
T ss_dssp ECCSSC-CCEECGGG-----------GTTCTTCCEEECCSSC-C-----CEECTTTTTTCTTCCEEECCSSC-CSCCCTT
T ss_pred ECCCCc-cCCcChhH-----------hcCcccCCEEECCCCc-c-----cccChhhccccccccEEECCCCc-cccCCHh
Confidence 999987 55553332 3478999999998875 3 34446677899999999999995 566665
Q ss_pred ccCCCCCCcEEEEcCCcc
Q 010462 468 HLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 468 ~~~~l~~L~~L~l~~c~~ 485 (510)
.+..+++|+.|++++|+.
T Consensus 390 ~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 390 IFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp TTTTCTTCCEEECCSSCB
T ss_pred HhccCCcccEEEccCCCc
Confidence 457899999999998864
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-29 Score=253.07 Aligned_cols=360 Identities=18% Similarity=0.180 Sum_probs=231.1
Q ss_pred CceeEEEEEeecCCCcc-ccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVP-IPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~ 160 (510)
..+++|++.++.+...+ ..+. .+++|++|++++|. +..+.|..|..+++|++|+++ +|.+..+|.
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~ 91 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLR----ACANLQVLILKSSR---INTIEGDAFYSLGSLEHLDLS-------DNHLSSLSS 91 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTS----SCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-------TSCCCSCCH
T ss_pred CCccEEECcCCccCccChhhhh----cCCcccEEECCCCC---cCccChhhccccccCCEEECC-------CCccCccCH
Confidence 68999999998877543 3344 89999999999997 555567778999999999999 888888755
Q ss_pred -cccccCccceEeccCCCCccc--cchhhhcccccceeccCCCCccccCc-hhhhccccCceeecCCCcccccccccccC
Q 010462 161 -NIEKLLHLKYLSLFGQKKIEK--LPETLCELYNLERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGTDSLRYLPAGIGE 236 (510)
Q Consensus 161 -~i~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 236 (510)
.++++++|++|++++|. +.. .|..++++++|++|++++|..+..+| ..+.++++|++|++++|......|..++.
T Consensus 92 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 48889999999999998 664 46678899999999999987666666 46888999999999988766667777776
Q ss_pred cccccccCcEEEeC------------------------ccCCccCcccccccccCCC-----------------------
Q 010462 237 LIRLRSVRKFVVGG------------------------GYDRACSLGSLKKLNLLRD----------------------- 269 (510)
Q Consensus 237 l~~L~~L~l~~~~~------------------------~~~~~~~~~~l~~l~~L~~----------------------- 269 (510)
+++|+.|++..+.. .............+++|+.
T Consensus 171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 66666665544332 1100000000001111111
Q ss_pred -----ceecCccc--CCChhh----------------------------------------------------hhH-hhc
Q 010462 270 -----CRIRGLGD--VSDAGE----------------------------------------------------ARR-AEL 289 (510)
Q Consensus 270 -----l~i~~~~~--~~~~~~----------------------------------------------------~~~-~~l 289 (510)
+++.++.. ...... ..+ ..+
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~ 330 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH
Confidence 11111100 000000 000 001
Q ss_pred cCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhh---hccCCCCCCccEEEEeecCCccCCCch--hHHhhhhcccc
Q 010462 290 EKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERL---LEALGPPPNLKKLRIDEYRGRRNVVPI--SWFMSLTNLRF 364 (510)
Q Consensus 290 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~p~--~~~~~l~~L~~ 364 (510)
..+++|+.|++++|. ..... ...+..+++|+.|++++|.... ++. ..+..+++|++
T Consensus 331 ~~l~~L~~L~Ls~N~-----------------l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~ 391 (549)
T 2z81_A 331 QHLKSLEFLDLSENL-----------------MVEEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTS 391 (549)
T ss_dssp HHCTTCCEEECCSSC-----------------CCHHHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCE
T ss_pred hcCccccEEEccCCc-----------------cccccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCE
Confidence 123334444444333 22222 3346778899999999998776 541 34678999999
Q ss_pred eeccCccCCCcCCC-CCCCCccceeeccCccccEEecccccCCCC------CCCCCcccccccccccccccccccccccc
Q 010462 365 LFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVES------DTDGSSVIAFPKLKHLTFWVMNALEELDF 437 (510)
Q Consensus 365 L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~L~~L~l~~~~~L~~~~~ 437 (510)
|++++|... .+|. ++.+++|++|++++|. ++.++........ -.-......+++|++|+++++. ++.+.
T Consensus 392 L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~ip- 467 (549)
T 2z81_A 392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKTLP- 467 (549)
T ss_dssp EECTTCCCC-CCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSCC-
T ss_pred EECCCCCCc-cCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc-cCcCC-
Confidence 999999544 5665 7888999999999887 4443322110000 0000011357778888877774 55432
Q ss_pred ccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcc
Q 010462 438 ETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 438 ~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 485 (510)
. ...+++|+.|++++|...+..|..+..+++|+.|++++|+.
T Consensus 468 -----~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 468 -----D-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp -----C-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred -----C-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 2 24689999999999965444455688899999999999874
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=253.94 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=111.0
Q ss_pred CceeEEEEEeecCCCccc-cccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-
Q 010462 82 TKILHLMLTLHRGASVPI-PIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP- 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp- 159 (510)
..+++|++.++.+...+. .+. ++++|++|++++|. +..+.+..|..+++|++|+++ ++.+..+|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~-------~n~l~~~~~ 93 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFF----SFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILT-------GNPIQSLAL 93 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTT----TCSSCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TCCCCEECT
T ss_pred ccccEEEccCCccCccChhHhh----CCCCceEEECCCCc---CCccCcccccCchhCCEEeCc-------CCcCCccCH
Confidence 678999999888775432 333 88999999999987 555567778889999999998 88887774
Q ss_pred ccccccCccceEeccCCCCccccch-hhhcccccceeccCCCCccc-cCchhhhccccCceeecCCCcccccccccccCc
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLR-ELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGEL 237 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l 237 (510)
..|+++++|++|++++|. +..+|. .++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+
T Consensus 94 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 172 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (570)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH
T ss_pred hhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccch
Confidence 678889999999999888 777765 58888999999999888333 368888888999999988885544444445555
Q ss_pred ccc
Q 010462 238 IRL 240 (510)
Q Consensus 238 ~~L 240 (510)
++|
T Consensus 173 ~~L 175 (570)
T 2z63_A 173 HQM 175 (570)
T ss_dssp HTC
T ss_pred hcc
Confidence 555
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=258.03 Aligned_cols=156 Identities=21% Similarity=0.178 Sum_probs=128.0
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc-
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT- 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~- 160 (510)
.++++|++.++.+...+.. .|.++++|++|++++|. +..+.|.+|..+++|++|+++ +|.+..+|.
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~l~~~ 91 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA---NFTRYSQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQ-------HNELSQLSDK 91 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG---GGGGGTTCSEEECCSSC---CCCCCTTHHHHCTTCCEEECC-------SSCCCCCCTT
T ss_pred CCCcEEECCCCCCCCcCHH---HHhCCCcCcEEECCCCc---cCccCHHHHhcccCcCEEECC-------CCccCccChh
Confidence 7899999999988765542 23489999999999998 556678889999999999999 999999976
Q ss_pred cccccCccceEeccCCCCccccc-hhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccccccccccc--Cc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIG--EL 237 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~--~l 237 (510)
.|+++++|++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++++|......+..++ .+
T Consensus 92 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred hhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence 68999999999999999 66665 6799999999999999985556677788999999999999955444344333 45
Q ss_pred ccccccCcEEEeCc
Q 010462 238 IRLRSVRKFVVGGG 251 (510)
Q Consensus 238 ~~L~~L~l~~~~~~ 251 (510)
++|+.|++..+...
T Consensus 171 ~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 171 SSLKKLELSSNQIK 184 (680)
T ss_dssp CEESEEECTTCCCC
T ss_pred ccccEEECCCCccc
Confidence 78898888776554
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-28 Score=242.86 Aligned_cols=316 Identities=20% Similarity=0.134 Sum_probs=216.7
Q ss_pred EEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccccc
Q 010462 86 HLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEK 164 (510)
Q Consensus 86 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~ 164 (510)
.+...+.....+|..+. ++++.|++++|. +..+.+..|..+++|++|+++ +|.+..+ |..|.+
T Consensus 15 ~v~c~~~~l~~ip~~~~------~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~i~~~~~~~~~~ 78 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP------TETRLLDLGKNR---IKTLNQDEFASFPHLEELELN-------ENIVSAVEPGAFNN 78 (477)
T ss_dssp EEECCSCCCSSCCSCCC------TTCSEEECCSSC---CCEECTTTTTTCTTCCEEECT-------TSCCCEECTTTTTT
T ss_pred EEEeCCCCcCcCCCCCC------CCCcEEECCCCc---cceECHhHccCCCCCCEEECC-------CCccCEeChhhhhC
Confidence 45555555665665543 678889999887 555566778888999999998 8888777 778888
Q ss_pred cCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccccc
Q 010462 165 LLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSV 243 (510)
Q Consensus 165 l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 243 (510)
+++|++|++++|. ++.+|.. +.++++|++|++++|......|..+.++++|++|++++|......|..++.+++|+.|
T Consensus 79 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 79 LFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp CTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 8999999999888 7777754 6788999999999888555566778888999999998886655556678888888888
Q ss_pred CcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhh
Q 010462 244 RKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDED 323 (510)
Q Consensus 244 ~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 323 (510)
++..+.... .....+..+++|+.|++.+... .......+..+++|+.|+++.+. ..
T Consensus 158 ~l~~n~l~~---~~~~~l~~l~~L~~L~l~~n~i----~~~~~~~~~~l~~L~~L~l~~~~-----------------~~ 213 (477)
T 2id5_A 158 TLEKCNLTS---IPTEALSHLHGLIVLRLRHLNI----NAIRDYSFKRLYRLKVLEISHWP-----------------YL 213 (477)
T ss_dssp EEESCCCSS---CCHHHHTTCTTCCEEEEESCCC----CEECTTCSCSCTTCCEEEEECCT-----------------TC
T ss_pred ECCCCcCcc---cChhHhcccCCCcEEeCCCCcC----cEeChhhcccCcccceeeCCCCc-----------------cc
Confidence 887765542 2223456666777777665321 11222356667788888887765 22
Q ss_pred HhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEEeccc
Q 010462 324 ERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNE 402 (510)
Q Consensus 324 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~ 402 (510)
..++.......+|+.|++++|.+.. +|...+..+++|+.|+|++|......+. +..+++|+.|+|++|. +..++..
T Consensus 214 ~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 290 (477)
T 2id5_A 214 DTMTPNCLYGLNLTSLSITHCNLTA--VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPY 290 (477)
T ss_dssp CEECTTTTTTCCCSEEEEESSCCCS--CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTT
T ss_pred cccCcccccCccccEEECcCCcccc--cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHH
Confidence 2233334444578888888887776 6645667788888888888854443333 7778888888888776 4443222
Q ss_pred ccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCccc
Q 010462 403 FLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKL 462 (510)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 462 (510)
. +..+++|+.|+++++. ++.+ .+..+..+++|+.|++++|+..
T Consensus 291 ~-----------~~~l~~L~~L~L~~N~-l~~~-----~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 291 A-----------FRGLNYLRVLNVSGNQ-LTTL-----EESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp T-----------BTTCTTCCEEECCSSC-CSCC-----CGGGBSCGGGCCEEECCSSCEE
T ss_pred H-----------hcCcccCCEEECCCCc-Ccee-----CHhHcCCCcccCEEEccCCCcc
Confidence 1 2356777777777763 4432 2334456777788888777654
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-28 Score=251.05 Aligned_cols=260 Identities=17% Similarity=0.165 Sum_probs=118.0
Q ss_pred hhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccc
Q 010462 186 LCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLN 265 (510)
Q Consensus 186 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 265 (510)
+..+++|++|++++|. +..+|..+..+++|++|++++|......|..++.+++|+.|++..+.... ......+..++
T Consensus 274 ~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~l~ 350 (606)
T 3t6q_A 274 FHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL--ELGTGCLENLE 350 (606)
T ss_dssp TTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC--BCCSSTTTTCT
T ss_pred hccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc--ccchhhhhccC
Confidence 4455555555555555 44555555555555555555554333334445555555555554443321 11112244444
Q ss_pred cCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecC
Q 010462 266 LLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYR 345 (510)
Q Consensus 266 ~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 345 (510)
+|+.+++.+..... . ......+..+++|+.|++++|.. ....+..+..+++|+.|++++|.
T Consensus 351 ~L~~L~l~~n~l~~-~-~~~~~~~~~l~~L~~L~l~~n~l-----------------~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 351 NLRELDLSHDDIET-S-DCCNLQLRNLSHLQSLNLSYNEP-----------------LSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp TCCEEECCSSCCCE-E-EESTTTTTTCTTCCEEECCSCSC-----------------EEECTTTTTTCTTCSEEECTTCC
T ss_pred cCCEEECCCCcccc-c-cCcchhcccCCCCCEEECCCCcC-----------------CcCCHHHhcCCccCCeEECCCCc
Confidence 55555544321100 0 00022344455555555555531 11122233344444444444444
Q ss_pred CccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccc--------------------------cEE
Q 010462 346 GRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKS--------------------------VKR 398 (510)
Q Consensus 346 ~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~--------------------------l~~ 398 (510)
......+ .++..+++|+.|++++|......|. ++.+++|++|++++|.. +..
T Consensus 412 l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 412 LKVKDAQ-SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp EECCTTC-CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred CCCcccc-hhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 3321011 2233444444444444433332222 34444444444444431 222
Q ss_pred ecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEE
Q 010462 399 VGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKL 478 (510)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 478 (510)
++... +..+++|+.|+++++. +.+..|..+..+++| .|++++|......|..+..+++|+.|
T Consensus 491 ~~~~~-----------~~~l~~L~~L~Ls~N~------l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L 552 (606)
T 3t6q_A 491 IDQHA-----------FTSLKMMNHVDLSHNR------LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI 552 (606)
T ss_dssp ECTTT-----------TTTCTTCCEEECCSSC------CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred cChhh-----------hccccCCCEEECCCCc------cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE
Confidence 21111 2244555555555442 223345555666777 77777775443344445667777788
Q ss_pred EEcCCcch
Q 010462 479 HIRRCPIL 486 (510)
Q Consensus 479 ~l~~c~~l 486 (510)
++++||..
T Consensus 553 ~l~~N~~~ 560 (606)
T 3t6q_A 553 NLRQNPLD 560 (606)
T ss_dssp ECTTCCEE
T ss_pred eCCCCCcc
Confidence 88777643
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=245.15 Aligned_cols=338 Identities=14% Similarity=0.071 Sum_probs=207.8
Q ss_pred CceeEEEEEeecCCCcc-ccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVP-IPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~ 160 (510)
+.+++|++.++.+...+ ..+. .+++|++|++++|. +..+.|..|..+++|++|+++ +|.+..+|.
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~----~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls-------~N~l~~lp~ 117 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDIS----FLSELRVLRLSHNR---IRSLDFHVFLFNQDLEYLDVS-------HNRLQNISC 117 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTT----TCTTCCEEECCSCC---CCEECTTTTTTCTTCCEEECT-------TSCCCEECS
T ss_pred CCcCEEECCCCCccccChhhhc----cCCCccEEECCCCC---CCcCCHHHhCCCCCCCEEECC-------CCcCCccCc
Confidence 67788888877776544 2333 77888888888886 555556677788888888888 777777776
Q ss_pred cccccCccceEeccCCCCcccc--chhhhcccccceeccCCCCccccCchhhhccccC--ceeecCCCcc--cccccccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKL--PETLCELYNLERLNVDHCKNLRELPRGIGKLRKL--MYLHNEGTDS--LRYLPAGI 234 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~p~~l 234 (510)
. .+++|++|++++|. +..+ |..++++++|++|++++|. +.. ..+..+++| ++|++++|.. ....|..+
T Consensus 118 ~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 118 C--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp C--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred c--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCcccc
Confidence 6 67888888888887 6554 3677788888888888776 332 234455555 7777777644 23333333
Q ss_pred cCc--------------------------cc-------------------------------------------------
Q 010462 235 GEL--------------------------IR------------------------------------------------- 239 (510)
Q Consensus 235 ~~l--------------------------~~------------------------------------------------- 239 (510)
..+ ++
T Consensus 192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence 222 22
Q ss_pred ------ccccCcEEEeCccCCccCcccc-----cccccCCCceecCcccCCChhhhhHhhc-------------------
Q 010462 240 ------LRSVRKFVVGGGYDRACSLGSL-----KKLNLLRDCRIRGLGDVSDAGEARRAEL------------------- 289 (510)
Q Consensus 240 ------L~~L~l~~~~~~~~~~~~~~~l-----~~l~~L~~l~i~~~~~~~~~~~~~~~~l------------------- 289 (510)
|+.|++..+.... ..+..+ ..++.|+.+++.... + .........+
T Consensus 272 ~~~~~~L~~L~l~~n~l~~---~ip~~~~~~~~~~L~~L~~~~~~~~~-~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~ 346 (562)
T 3a79_B 272 FFWPRPVEYLNIYNLTITE---RIDREEFTYSETALKSLMIEHVKNQV-F-LFSKEALYSVFAEMNIKMLSISDTPFIHM 346 (562)
T ss_dssp HHTTSSEEEEEEEEEEECS---CCCCCCCCCCSCSCCEEEEEEEEECC-C-SSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred hhhcccccEEEEeccEeec---cccchhhhcccccchheehhhcccce-e-ecChhhhhhhhccCcceEEEccCCCcccc
Confidence 2222222222210 011111 111111111111100 0 0000000011
Q ss_pred ---cCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCch--hHHhhhhcccc
Q 010462 290 ---EKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPI--SWFMSLTNLRF 364 (510)
Q Consensus 290 ---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~--~~~~~l~~L~~ 364 (510)
..+++|+.|++++|. .....+..+..+++|+.|++++|.... ++. ..+..+++|+.
T Consensus 347 ~~~~~l~~L~~L~l~~n~-----------------l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 347 VCPPSPSSFTFLNFTQNV-----------------FTDSVFQGCSTLKRLQTLILQRNGLKN--FFKVALMTKNMSSLET 407 (562)
T ss_dssp CCCSSCCCCCEEECCSSC-----------------CCTTTTTTCCSCSSCCEEECCSSCCCB--TTHHHHTTTTCTTCCE
T ss_pred cCccCCCCceEEECCCCc-----------------cccchhhhhcccCCCCEEECCCCCcCC--cccchhhhcCCCCCCE
Confidence 344556666665554 223345666778888888888887765 441 34567888888
Q ss_pred eeccCccCCCcCCC--CCCCCccceeeccCccccEEecccccCCCCCCCCCccccc-ccccccccccccccccccccccc
Q 010462 365 LFLFGWRNCEHLPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAF-PKLKHLTFWVMNALEELDFETAI 441 (510)
Q Consensus 365 L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~ 441 (510)
|++++|.....+|. +..+++|++|++++|. +. ... ...+ ++|+.|+++++. ++. +
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~---~~~-----------~~~l~~~L~~L~L~~N~-l~~------i 465 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNM-LT---GSV-----------FRCLPPKVKVLDLHNNR-IMS------I 465 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSSC-CC---GGG-----------GSSCCTTCSEEECCSSC-CCC------C
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCCC-CC---cch-----------hhhhcCcCCEEECCCCc-Ccc------c
Confidence 88888866554554 6778888888888876 21 111 1133 589999988874 543 4
Q ss_pred ccccccCcccceeeeccCcccccCCcc-cCCCCCCcEEEEcCCcch
Q 010462 442 KREIIIMPRLSSLTIWSCRKLKALPDH-LLQKTTLQKLHIRRCPIL 486 (510)
Q Consensus 442 ~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l 486 (510)
|..+..+++|+.|++++| .++.+|.. +..+++|+.|++++||.-
T Consensus 466 p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 466 PKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred ChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 555568999999999999 46688887 888999999999999853
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-28 Score=247.84 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=122.6
Q ss_pred eEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccccc
Q 010462 85 LHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIE 163 (510)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~ 163 (510)
+++++.++.+..+|..+. ++|+.|++++|. +..+.|..|..+++|++|+++ +|.+..+ |..|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~------~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~~~~~ 66 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS------QKTTILNISQNY---ISELWTSDILSLSKLRILIIS-------HNRIQYLDISVFK 66 (520)
T ss_dssp CEEECTTSCCSSCCCSCC------TTCSEEECCSSC---CCCCCHHHHTTCTTCCEEECC-------SSCCCEEEGGGGT
T ss_pred ceEecCCCCccccccccc------ccccEEECCCCc---ccccChhhccccccccEEecC-------CCccCCcChHHhh
Confidence 567888888887776542 899999999998 566577789999999999999 9998888 78999
Q ss_pred ccCccceEeccCCCCccccchhhhcccccceeccCCCCccc-cCchhhhccccCceeecCCCcccccccccccCcccc--
Q 010462 164 KLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLR-ELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL-- 240 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L-- 240 (510)
++++|++|++++|. ++.+|.. .+++|++|++++|.... .+|..++++++|++|++++|.... ..++.+++|
T Consensus 67 ~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L 140 (520)
T 2z7x_B 67 FNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNI 140 (520)
T ss_dssp TCTTCCEEECCSSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCE
T ss_pred cccCCCEEecCCCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcccccccee
Confidence 99999999999999 8899986 89999999999999443 468899999999999999995433 346777788
Q ss_pred cccCcEEEeC
Q 010462 241 RSVRKFVVGG 250 (510)
Q Consensus 241 ~~L~l~~~~~ 250 (510)
+.|++..+..
T Consensus 141 ~~L~l~~n~l 150 (520)
T 2z7x_B 141 SKVLLVLGET 150 (520)
T ss_dssp EEEEEEECTT
T ss_pred eEEEeecccc
Confidence 9999888766
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=253.05 Aligned_cols=279 Identities=19% Similarity=0.092 Sum_probs=187.4
Q ss_pred CCceeEEEEEeecCCCc-cccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-
Q 010462 81 ETKILHLMLTLHRGASV-PIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI- 158 (510)
Q Consensus 81 ~~~~~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l- 158 (510)
++.+++|++.++.+... +..+. ++++|++|++++|.. ...+.|..|..+++|++|+|+ +|.+..+
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~----~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls-------~N~l~~~~ 89 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFP----FLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLG-------SSKIYFLH 89 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCS----SCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECT-------TCCCCEEC
T ss_pred CCCcCEEECCCCcCCccChhHCc----ccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECC-------CCcCcccC
Confidence 38899999999988763 34444 999999999999952 444457789999999999999 8988877
Q ss_pred cccccccCccceEeccCCCCccccchh--hhcccccceeccCCCCccccC-chhhhccccCceeecCCCccccccccccc
Q 010462 159 PTNIEKLLHLKYLSLFGQKKIEKLPET--LCELYNLERLNVDHCKNLREL-PRGIGKLRKLMYLHNEGTDSLRYLPAGIG 235 (510)
Q Consensus 159 p~~i~~l~~L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~l~ 235 (510)
|..|+++++|++|++++|...+.+|.. +.++++|++|++++|...... +..++++++|++|++++|......|..++
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence 889999999999999999944446665 889999999999999843333 35689999999999999976566666666
Q ss_pred Cc--ccccccCcEEEeCccCCccCcccccccc------cCCCceecCcccC-----------------------------
Q 010462 236 EL--IRLRSVRKFVVGGGYDRACSLGSLKKLN------LLRDCRIRGLGDV----------------------------- 278 (510)
Q Consensus 236 ~l--~~L~~L~l~~~~~~~~~~~~~~~l~~l~------~L~~l~i~~~~~~----------------------------- 278 (510)
.+ ++|+.|++..+..... ....+..+. .|+.+++++....
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~---~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSR---VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCC---CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred cccCCccceEECCCCccccc---cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 65 6677776665544321 111111111 1333333321000
Q ss_pred -----------------------------CChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhcc
Q 010462 279 -----------------------------SDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEA 329 (510)
Q Consensus 279 -----------------------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (510)
..........+..+++|+.|+++.|. .....+..
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-----------------i~~~~~~~ 309 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-----------------INKIADEA 309 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-----------------CCEECTTT
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-----------------CCCCChHH
Confidence 00001112234455666666666664 22223445
Q ss_pred CCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 330 LGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 330 l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
+..+++|+.|++++|..... .| ..+..+++|+.|++++|......+. +..+++|++|+|++|.
T Consensus 310 ~~~l~~L~~L~Ls~N~l~~~-~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 310 FYGLDNLQVLNLSYNLLGEL-YS-SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp TTTCSSCCEEEEESCCCSCC-CS-CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred hcCCCCCCEEECCCCCCCcc-CH-HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 66777888888888877651 24 5667788888888888754333332 6777888888887765
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-28 Score=250.29 Aligned_cols=358 Identities=18% Similarity=0.147 Sum_probs=225.0
Q ss_pred eEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccccc
Q 010462 85 LHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIE 163 (510)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~ 163 (510)
+.+...+..+..+|..+. +++++|++++|. +..+.+..|..+++|++|+++ +|.+..+ |..|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~------~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~l~~i~~~~~~ 77 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP------SSTKNIDLSFNP---LKILKSYSFSNFSELQWLDLS-------RCEIETIEDKAWH 77 (606)
T ss_dssp TEEECTTSCCSSCCTTSC------TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-------TCCCCEECTTTTT
T ss_pred CceEccCCCcccCCCCCC------CCcCEEECCCCC---cCEeChhhccCCccCcEEeCC-------CCcccccCHHHhh
Confidence 345666666776776543 789999999998 566567679999999999999 9998888 67899
Q ss_pred ccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccCc-hhhhccccCceeecCCCcccc-cccccccCcccc
Q 010462 164 KLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGTDSLR-YLPAGIGELIRL 240 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L 240 (510)
++++|++|++++|. +..+ |.+++++++|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|
T Consensus 78 ~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 155 (606)
T 3vq2_A 78 GLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155 (606)
T ss_dssp TCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTC
T ss_pred chhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCC
Confidence 99999999999999 6665 8889999999999999999 55555 779999999999999996544 579999999999
Q ss_pred cccCcEEEeCccCCccCcccccccccCC----CceecCccc--CCC------------------hhhhhHhhccCCCCCC
Q 010462 241 RSVRKFVVGGGYDRACSLGSLKKLNLLR----DCRIRGLGD--VSD------------------AGEARRAELEKKKSLL 296 (510)
Q Consensus 241 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~----~l~i~~~~~--~~~------------------~~~~~~~~l~~~~~L~ 296 (510)
++|++..+..... ....+..+.+|+ .+++..... +.. ........+..++.|+
T Consensus 156 ~~L~Ls~n~l~~~---~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 232 (606)
T 3vq2_A 156 VHVDLSYNYIQTI---TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232 (606)
T ss_dssp CEEECCSSCCCEE---CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCE
T ss_pred CEEEccCCcceec---ChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccc
Confidence 9999988766532 222333333333 344433111 000 0112223334444444
Q ss_pred eEEEEecCCCCCCccc----ccCCC------------CcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhh
Q 010462 297 KLGLHFGHSRDGDEER----AGRRE------------NEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLT 360 (510)
Q Consensus 297 ~L~l~~~~~~~~~~~~----~~~~~------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~ 360 (510)
.+.+..+.+....... ..... .........+. +..+++|+.|+++++.... +| ++..++
T Consensus 233 ~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~--l~--~l~~~~ 307 (606)
T 3vq2_A 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY--LE--DVPKHF 307 (606)
T ss_dssp EEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC--CC--CCCTTC
T ss_pred cccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh--hh--hccccc
Confidence 4444333211100000 00000 00001111222 4556677777777777655 55 455667
Q ss_pred cccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccc----------
Q 010462 361 NLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMN---------- 430 (510)
Q Consensus 361 ~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------- 430 (510)
+|++|++++|.. +.+|.+ .+++|++|++++|..+..++ +..+++|+.|+++++.
T Consensus 308 ~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~--------------~~~l~~L~~L~ls~n~l~~~~~~~~~ 371 (606)
T 3vq2_A 308 KWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFK--------------KVALPSLSYLDLSRNALSFSGCCSYS 371 (606)
T ss_dssp CCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECC--------------CCCCTTCCEEECCSSCEEEEEECCHH
T ss_pred cCCEEEcccccC-cccccC-CCCccceeeccCCcCccchh--------------hccCCCCCEEECcCCccCCCcchhhh
Confidence 777777777754 566655 66777777776664333321 1234455555544332
Q ss_pred -----cccccccc----cccccccccCcccceeeeccCcccccCC-cccCCCCCCcEEEEcCCc
Q 010462 431 -----ALEELDFE----TAIKREIIIMPRLSSLTIWSCRKLKALP-DHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 431 -----~L~~~~~~----~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~ 484 (510)
.|+.+.+. ...|..+..+++|+.|++++|...+..| ..+..+++|+.|++++|.
T Consensus 372 ~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 372 DLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp HHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred hccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 11111111 1234455677888888888885544444 466778888888888875
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=238.51 Aligned_cols=326 Identities=19% Similarity=0.214 Sum_probs=188.3
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..++.|.+.++.+..++. +. .+++|++|++++|. +.. .+. +..+++|++|+++ ++.+..++.
T Consensus 46 ~~l~~L~l~~~~i~~l~~-~~----~l~~L~~L~Ls~n~---l~~-~~~-~~~l~~L~~L~l~-------~n~l~~~~~- 107 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-VE----YLNNLTQINFSNNQ---LTD-ITP-LKNLTKLVDILMN-------NNQIADITP- 107 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-GG----GCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECC-------SSCCCCCGG-
T ss_pred ccccEEecCCCCCccCcc-hh----hhcCCCEEECCCCc---cCC-chh-hhccccCCEEECC-------CCccccChh-
Confidence 456777777666654432 33 67777777777776 333 233 6777777777777 777766655
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
+.++++|++|++++|. ++.+|. +.++++|++|++++|. +..+|. +..+++|++|+++++ ...++. ++.+++|+
T Consensus 108 ~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~ 180 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQ--VTDLKP-LANLTTLE 180 (466)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEES--CCCCGG-GTTCTTCC
T ss_pred hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCCc--ccCchh-hccCCCCC
Confidence 7777777777777776 666665 6777777777777776 555543 555555555555422 122222 44555555
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChh----------------hhhHhhccCCCCCCeEEEEecCC
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAG----------------EARRAELEKKKSLLKLGLHFGHS 305 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~----------------~~~~~~l~~~~~L~~L~l~~~~~ 305 (510)
.|++..+.... +..+..+++|+.|++.+........ -.....+..+++|+.|++++|..
T Consensus 181 ~L~l~~n~l~~-----~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l 255 (466)
T 1o6v_A 181 RLDISSNKVSD-----ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 255 (466)
T ss_dssp EEECCSSCCCC-----CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC
T ss_pred EEECcCCcCCC-----ChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcc
Confidence 55554443321 1234444444444444321111000 00001233445555555554431
Q ss_pred CCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCcc
Q 010462 306 RDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSL 385 (510)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L 385 (510)
. .. ..+..+++|+.|++++|.... ++ . +..+++|+.|++++|. +..++.++.+++|
T Consensus 256 ~------------------~~-~~~~~l~~L~~L~l~~n~l~~--~~-~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L 311 (466)
T 1o6v_A 256 S------------------NL-APLSGLTKLTELKLGANQISN--IS-P-LAGLTALTNLELNENQ-LEDISPISNLKNL 311 (466)
T ss_dssp C------------------CC-GGGTTCTTCSEEECCSSCCCC--CG-G-GTTCTTCSEEECCSSC-CSCCGGGGGCTTC
T ss_pred c------------------cc-hhhhcCCCCCEEECCCCccCc--cc-c-ccCCCccCeEEcCCCc-ccCchhhcCCCCC
Confidence 1 01 114556667777777766655 55 3 5566777777777763 3334446667777
Q ss_pred ceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccC
Q 010462 386 EYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKAL 465 (510)
Q Consensus 386 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 465 (510)
+.|++++|. +..++. +..+++|+.|++++|. ++.+ ..+..+++|+.|++++|... .+
T Consensus 312 ~~L~L~~n~-l~~~~~-------------~~~l~~L~~L~l~~n~-l~~~-------~~l~~l~~L~~L~l~~n~l~-~~ 368 (466)
T 1o6v_A 312 TYLTLYFNN-ISDISP-------------VSSLTKLQRLFFYNNK-VSDV-------SSLANLTNINWLSAGHNQIS-DL 368 (466)
T ss_dssp SEEECCSSC-CSCCGG-------------GGGCTTCCEEECCSSC-CCCC-------GGGTTCTTCCEEECCSSCCC-BC
T ss_pred CEEECcCCc-CCCchh-------------hccCccCCEeECCCCc-cCCc-------hhhccCCCCCEEeCCCCccC-cc
Confidence 777777765 222211 3467788888877774 4443 23467888999999888654 44
Q ss_pred CcccCCCCCCcEEEEcCCcc
Q 010462 466 PDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 466 p~~~~~l~~L~~L~l~~c~~ 485 (510)
++ +..+++|+.|++++|+.
T Consensus 369 ~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 369 TP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp GG-GTTCTTCCEEECCCEEE
T ss_pred ch-hhcCCCCCEEeccCCcc
Confidence 43 77788999999988864
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=233.13 Aligned_cols=308 Identities=17% Similarity=0.112 Sum_probs=228.5
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCcccc-ch
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKL-PE 184 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l-p~ 184 (510)
.+++++.|++.++. +..+.+..|..+++|++|+++ ++.+..++ ..+..+++|++|++++|. +..+ |.
T Consensus 43 ~l~~l~~l~l~~~~---l~~l~~~~~~~l~~L~~L~L~-------~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLN-------DLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEESCE---ESEECTHHHHHCCCCSEEECT-------TSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred ccCCceEEEecCCc---hhhCChhHhcccccCcEEECC-------CCcccccChhhccCCCCcCEEECCCCC-CCcCCHH
Confidence 56788888888886 555455667888888888888 88877774 477888888888888888 5555 45
Q ss_pred hhhcccccceeccCCCCccccCchh-hhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccc
Q 010462 185 TLCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKK 263 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 263 (510)
.+.++++|++|++++|. +..+|.. +.++++|++|++++|......|..++.+++|+.|++..+.... . .+..
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~---~~~~ 184 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---V---DLSL 184 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB---C---CGGG
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc---c---cccc
Confidence 57888888888888887 6677766 4778888888888886555555667888888888887765543 1 2455
Q ss_pred cccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEee
Q 010462 264 LNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDE 343 (510)
Q Consensus 264 l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 343 (510)
+++|+.+++....- ..+.....|+.|++++|... .++. ..+++|+.|++++
T Consensus 185 l~~L~~L~l~~n~l---------~~~~~~~~L~~L~l~~n~l~------------------~~~~--~~~~~L~~L~l~~ 235 (390)
T 3o6n_A 185 IPSLFHANVSYNLL---------STLAIPIAVEELDASHNSIN------------------VVRG--PVNVELTILKLQH 235 (390)
T ss_dssp CTTCSEEECCSSCC---------SEEECCSSCSEEECCSSCCC------------------EEEC--CCCSSCCEEECCS
T ss_pred ccccceeecccccc---------cccCCCCcceEEECCCCeee------------------eccc--cccccccEEECCC
Confidence 56677766654211 12334568999999888621 1111 2357899999999
Q ss_pred cCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccc
Q 010462 344 YRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLK 422 (510)
Q Consensus 344 ~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 422 (510)
|.... .+ ++..+++|++|++++|......|. ++.+++|++|+|++|. ++.++.. ...+|+|+
T Consensus 236 n~l~~--~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~------------~~~l~~L~ 298 (390)
T 3o6n_A 236 NNLTD--TA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY------------GQPIPTLK 298 (390)
T ss_dssp SCCCC--CG--GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS------------SSCCTTCC
T ss_pred CCCcc--cH--HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc------------cCCCCCCC
Confidence 99876 44 788999999999999976655454 8899999999999987 6555432 23689999
Q ss_pred cccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcchHH
Q 010462 423 HLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPILEE 488 (510)
Q Consensus 423 ~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 488 (510)
.|+++++. ++. +|..+..+++|+.|++++|+ +..++ +..+++|+.|++++|+.-.+
T Consensus 299 ~L~L~~n~-l~~------~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 299 VLDLSHNH-LLH------VERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp EEECCSSC-CCC------CGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred EEECCCCc-cee------cCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCccch
Confidence 99999985 543 34445689999999999995 56665 66789999999999985443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=237.72 Aligned_cols=333 Identities=13% Similarity=0.101 Sum_probs=240.0
Q ss_pred CceeEEEEEeecCCC-c-cccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGAS-V-PIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKK-I 158 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~-~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-l 158 (510)
.+++.|.+.++.... . +..+ ..+++|++|++++|. +....|..|..+++|++|+++ +|.+.. +
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~----~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~ 119 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTF----RGLSSLIILKLDYNQ---FLQLETGAFNGLANLEVLTLT-------QCNLDGAV 119 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTT----TTCTTCCEEECTTCT---TCEECTTTTTTCTTCCEEECT-------TSCCBTHH
T ss_pred ccccEEECcCCcccceECcccc----cccccCCEEeCCCCc---cCccChhhccCcccCCEEeCC-------CCCCCccc
Confidence 789999999987752 2 2334 489999999999998 556568889999999999999 888775 3
Q ss_pred ccc--ccccCccceEeccCCCCcccc-chh-hhcccccceeccCCCCccccCchhhhcc--ccCceeecCCCcccccccc
Q 010462 159 PTN--IEKLLHLKYLSLFGQKKIEKL-PET-LCELYNLERLNVDHCKNLRELPRGIGKL--RKLMYLHNEGTDSLRYLPA 232 (510)
Q Consensus 159 p~~--i~~l~~L~~L~l~~~~~~~~l-p~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l--~~L~~L~l~~~~~~~~~p~ 232 (510)
|.. +..+++|++|++++|. +..+ |.. +.++++|++|++++|......|..+..+ .+|+.|++++|......+.
T Consensus 120 ~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~ 198 (455)
T 3v47_A 120 LSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198 (455)
T ss_dssp HHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTT
T ss_pred cCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchh
Confidence 444 8899999999999999 5555 665 8899999999999999656667777766 7899999999954332222
Q ss_pred --------cccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCC------hhhhhHhhcc--CCCCCC
Q 010462 233 --------GIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSD------AGEARRAELE--KKKSLL 296 (510)
Q Consensus 233 --------~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~------~~~~~~~~l~--~~~~L~ 296 (510)
.+..+++|+.|++..+.........+.......+|+.+.+.+...... ........+. ..++|+
T Consensus 199 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 278 (455)
T 3v47_A 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278 (455)
T ss_dssp CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCC
T ss_pred hccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCce
Confidence 133567899998887765431111111122225566666654321110 0000011111 236899
Q ss_pred eEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcC
Q 010462 297 KLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHL 376 (510)
Q Consensus 297 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l 376 (510)
.|+++.|. .....+..+..+++|++|++++|.... ++...+..+++|++|++++|......
T Consensus 279 ~L~l~~n~-----------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~ 339 (455)
T 3v47_A 279 TCDLSKSK-----------------IFALLKSVFSHFTDLEQLTLAQNEINK--IDDNAFWGLTHLLKLNLSQNFLGSID 339 (455)
T ss_dssp EEECCSSC-----------------CCEECTTTTTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred EEEecCcc-----------------ccccchhhcccCCCCCEEECCCCcccc--cChhHhcCcccCCEEECCCCccCCcC
Confidence 99999987 333456677889999999999999886 43267889999999999999665544
Q ss_pred CC-CCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceee
Q 010462 377 PP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLT 455 (510)
Q Consensus 377 ~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~ 455 (510)
+. ++.+++|++|+|++|. +..++... +..+++|++|+++++. ++.+. +..+..+++|+.|+
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~N~-l~~~~-----~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNH-IRALGDQS-----------FLGLPNLKELALDTNQ-LKSVP-----DGIFDRLTSLQKIW 401 (455)
T ss_dssp GGGGTTCTTCCEEECCSSC-CCEECTTT-----------TTTCTTCCEEECCSSC-CSCCC-----TTTTTTCTTCCEEE
T ss_pred hhHhcCcccCCEEECCCCc-ccccChhh-----------ccccccccEEECCCCc-cccCC-----HhHhccCCcccEEE
Confidence 54 8899999999999997 55553222 3478999999999875 55432 33456899999999
Q ss_pred eccCcccccCC
Q 010462 456 IWSCRKLKALP 466 (510)
Q Consensus 456 l~~c~~l~~lp 466 (510)
+++|+.....|
T Consensus 402 l~~N~l~~~~~ 412 (455)
T 3v47_A 402 LHTNPWDCSCP 412 (455)
T ss_dssp CCSSCBCCCTT
T ss_pred ccCCCcccCCC
Confidence 99998766665
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=242.16 Aligned_cols=353 Identities=15% Similarity=0.104 Sum_probs=231.6
Q ss_pred ceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccc
Q 010462 83 KILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTN 161 (510)
Q Consensus 83 ~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~ 161 (510)
..+++++.++.+..+|..+ .++|++|++++|. +..+.+..|..+++|++|+++ +|.+..+ |..
T Consensus 32 ~~~~l~ls~~~L~~ip~~~------~~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~~ 95 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL------PPRTKALSLSQNS---ISELRMPDISFLSELRVLRLS-------HNRIRSLDFHV 95 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS------CTTCCEEECCSSC---CCCCCGGGTTTCTTCCEEECC-------SCCCCEECTTT
T ss_pred CCcEEEcCCCCCccCCCCC------CCCcCEEECCCCC---ccccChhhhccCCCccEEECC-------CCCCCcCCHHH
Confidence 3478899998888777654 3899999999998 566567789999999999999 9999888 778
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccC--chhhhccccCceeecCCCcccccccccccCccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLREL--PRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIR 239 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 239 (510)
|.++++|++|++++|. ++.+|.. .+++|++|++++|. +..+ |..++++++|++|++++|.... ..++.+++
T Consensus 96 ~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~ 168 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAH 168 (562)
T ss_dssp TTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTT
T ss_pred hCCCCCCCEEECCCCc-CCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---Cchhhhhh
Confidence 9999999999999999 8899987 89999999999999 6554 5789999999999999985433 34555666
Q ss_pred c--cccCcEEEeC--ccCCccCccc-----------------------ccccccCCCceecCcc----------------
Q 010462 240 L--RSVRKFVVGG--GYDRACSLGS-----------------------LKKLNLLRDCRIRGLG---------------- 276 (510)
Q Consensus 240 L--~~L~l~~~~~--~~~~~~~~~~-----------------------l~~l~~L~~l~i~~~~---------------- 276 (510)
| +.|++..+.. .......+.. +..+++|+.+++....
T Consensus 169 L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l 248 (562)
T 3a79_B 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248 (562)
T ss_dssp SCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC
T ss_pred ceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc
Confidence 6 8888887765 2211111111 1234445555444311
Q ss_pred ------------cCCChhhhhHhhccCCCCCCeEEEEecCCCCC-CcccccC--CCCc---------------chhhHhh
Q 010462 277 ------------DVSDAGEARRAELEKKKSLLKLGLHFGHSRDG-DEERAGR--RENE---------------EDEDERL 326 (510)
Q Consensus 277 ------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~--~~~~---------------~~~~~~~ 326 (510)
............ ....+|+.|++++|..... +...+.. .... .......
T Consensus 249 ~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~ 327 (562)
T 3a79_B 249 PTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327 (562)
T ss_dssp SSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHH
T ss_pred CcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhh
Confidence 000000000111 1223788888887763311 1100000 0000 0000000
Q ss_pred ----------------hc--cCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCC----CCCCCCc
Q 010462 327 ----------------LE--ALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLP----PLGKLPS 384 (510)
Q Consensus 327 ----------------~~--~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~----~~~~l~~ 384 (510)
.. ....+++|++|++++|..... .| .++..+++|+.|++++|... .++ .++.+++
T Consensus 328 ~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~ 404 (562)
T 3a79_B 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS-VF-QGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSS 404 (562)
T ss_dssp HHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT-TT-TTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTT
T ss_pred hccCcceEEEccCCCcccccCccCCCCceEEECCCCccccc-hh-hhhcccCCCCEEECCCCCcC-CcccchhhhcCCCC
Confidence 00 004566777777777776652 44 56667777888888777433 332 2677778
Q ss_pred cceeeccCccccEE-ecccccCCCCCCCCCccccccccccccccccccccccccccccccccccC-cccceeeeccCccc
Q 010462 385 LEYLEIEGMKSVKR-VGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIM-PRLSSLTIWSCRKL 462 (510)
Q Consensus 385 L~~L~L~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l 462 (510)
|++|++++|. +.. ++... +..+++|+.|+++++. ++ +..|. .+ ++|+.|++++| .+
T Consensus 405 L~~L~l~~N~-l~~~~~~~~-----------~~~l~~L~~L~l~~n~-l~-----~~~~~---~l~~~L~~L~L~~N-~l 462 (562)
T 3a79_B 405 LETLDVSLNS-LNSHAYDRT-----------CAWAESILVLNLSSNM-LT-----GSVFR---CLPPKVKVLDLHNN-RI 462 (562)
T ss_dssp CCEEECTTSC-CBSCCSSCC-----------CCCCTTCCEEECCSSC-CC-----GGGGS---SCCTTCSEEECCSS-CC
T ss_pred CCEEECCCCc-CCCccChhh-----------hcCcccCCEEECCCCC-CC-----cchhh---hhcCcCCEEECCCC-cC
Confidence 8888887776 322 33322 2356788888887765 32 23333 34 69999999999 67
Q ss_pred ccCCcccCCCCCCcEEEEcCCc
Q 010462 463 KALPDHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 463 ~~lp~~~~~l~~L~~L~l~~c~ 484 (510)
+.+|..+..+++|+.|++++|.
T Consensus 463 ~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 463 MSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp CCCCTTTTSSCCCSEEECCSSC
T ss_pred cccChhhcCCCCCCEEECCCCC
Confidence 7899888899999999999985
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-27 Score=241.26 Aligned_cols=308 Identities=17% Similarity=0.113 Sum_probs=232.5
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccc-h
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLP-E 184 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp-~ 184 (510)
.+++++.+++.+|. +..+.+..|..+++|++|+++ ++.+..++ ..|+.+++|++|++++|. +..+| .
T Consensus 49 ~l~~l~~l~l~~~~---l~~lp~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLN-------DLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH 117 (597)
T ss_dssp GGCCCSEEEESSCE---ESEECTHHHHHCCCCSEEECT-------TSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred cCCCceEEEeeCCC---CCCcCHHHHccCCCCcEEECC-------CCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHH
Confidence 56788888888886 556566667888899999998 88887774 478888899999999888 55554 4
Q ss_pred hhhcccccceeccCCCCccccCchh-hhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccc
Q 010462 185 TLCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKK 263 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 263 (510)
.++++++|++|++++|. +..+|.. ++++++|++|++++|......|..++.+++|+.|++..+.... . .+..
T Consensus 118 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~---~~~~ 190 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---V---DLSL 190 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB---C---CGGG
T ss_pred HHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC---c---Chhh
Confidence 56888999999999888 6677766 4788899999998886655556678888888888887766543 1 2455
Q ss_pred cccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEee
Q 010462 264 LNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDE 343 (510)
Q Consensus 264 l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 343 (510)
+++|+.+++.+..- ..+....+|+.|++++|... .++. ..+++|+.|++++
T Consensus 191 l~~L~~L~l~~n~l---------~~l~~~~~L~~L~ls~n~l~------------------~~~~--~~~~~L~~L~L~~ 241 (597)
T 3oja_B 191 IPSLFHANVSYNLL---------STLAIPIAVEELDASHNSIN------------------VVRG--PVNVELTILKLQH 241 (597)
T ss_dssp CTTCSEEECCSSCC---------SEEECCTTCSEEECCSSCCC------------------EEEC--SCCSCCCEEECCS
T ss_pred hhhhhhhhcccCcc---------ccccCCchhheeeccCCccc------------------cccc--ccCCCCCEEECCC
Confidence 66677776664211 12344568999999888621 1111 1236899999999
Q ss_pred cCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccc
Q 010462 344 YRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLK 422 (510)
Q Consensus 344 ~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 422 (510)
|.+.. . .++..+++|+.|++++|......|. ++.+++|+.|+|++|. +..++.. ...+|+|+
T Consensus 242 n~l~~--~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~------------~~~l~~L~ 304 (597)
T 3oja_B 242 NNLTD--T--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY------------GQPIPTLK 304 (597)
T ss_dssp SCCCC--C--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECS------------SSCCTTCC
T ss_pred CCCCC--C--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc------------cccCCCCc
Confidence 99876 3 4788999999999999976666564 8899999999999987 6555432 23689999
Q ss_pred cccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcchHH
Q 010462 423 HLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPILEE 488 (510)
Q Consensus 423 ~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 488 (510)
.|++++|. +.. +|..+..+++|+.|++++|. +..+| +..+++|+.|++++|+.-.+
T Consensus 305 ~L~Ls~N~-l~~------i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 305 VLDLSHNH-LLH------VERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp EEECCSSC-CCC------CGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred EEECCCCC-CCc------cCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCCCCh
Confidence 99999985 443 45555789999999999995 45665 66789999999999986444
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=223.51 Aligned_cols=302 Identities=19% Similarity=0.193 Sum_probs=237.2
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
+.+++|.+.++.+..++. +. .+++|++|++++|. +.. ++. +..+++|++|+++ +|.+..+| .
T Consensus 44 ~~L~~L~l~~~~i~~~~~-~~----~~~~L~~L~l~~n~---i~~-~~~-~~~l~~L~~L~L~-------~n~i~~~~-~ 105 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG-IE----YLTNLEYLNLNGNQ---ITD-ISP-LSNLVKLTNLYIG-------TNKITDIS-A 105 (347)
T ss_dssp TTCSEEECCSSCCCCCTT-GG----GCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECC-------SSCCCCCG-G
T ss_pred ccccEEEEeCCccccchh-hh----hcCCccEEEccCCc---ccc-chh-hhcCCcCCEEEcc-------CCcccCch-H
Confidence 789999999988776543 44 89999999999998 444 344 8999999999999 88888886 5
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
+.++++|++|++++|. +..+|. +..+++|++|++++|.....++. +..+++|++|++++|.. ..++. ++.+++|+
T Consensus 106 ~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~ 180 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKV-KDVTP-IANLTDLY 180 (347)
T ss_dssp GTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCS
T ss_pred HcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCc-CCchh-hccCCCCC
Confidence 8999999999999999 888887 89999999999999985666655 99999999999999954 44444 88899999
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcch
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEED 321 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 321 (510)
.|++..+.... +..+..+++|+.+++.+.... .. ..+..+++|+.|++++|....
T Consensus 181 ~L~l~~n~l~~-----~~~~~~l~~L~~L~l~~n~l~-~~-----~~~~~~~~L~~L~l~~n~l~~-------------- 235 (347)
T 4fmz_A 181 SLSLNYNQIED-----ISPLASLTSLHYFTAYVNQIT-DI-----TPVANMTRLNSLKIGNNKITD-------------- 235 (347)
T ss_dssp EEECTTSCCCC-----CGGGGGCTTCCEEECCSSCCC-CC-----GGGGGCTTCCEEECCSSCCCC--------------
T ss_pred EEEccCCcccc-----cccccCCCccceeecccCCCC-CC-----chhhcCCcCCEEEccCCccCC--------------
Confidence 99988776543 333777888888888764322 11 126788999999999986221
Q ss_pred hhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecc
Q 010462 322 EDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGN 401 (510)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~ 401 (510)
.+ .+..+++|+.|++++|.... ++ .+..+++|++|++++|. +..++.+..+++|+.|++++|. +...+.
T Consensus 236 ----~~-~~~~l~~L~~L~l~~n~l~~--~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 304 (347)
T 4fmz_A 236 ----LS-PLANLSQLTWLEIGTNQISD--IN--AVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQ-LGNEDM 304 (347)
T ss_dssp ----CG-GGTTCTTCCEEECCSSCCCC--CG--GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCGGGH
T ss_pred ----Cc-chhcCCCCCEEECCCCccCC--Ch--hHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCc-CCCcCh
Confidence 11 16788999999999998876 55 57789999999999994 5556778899999999999987 332222
Q ss_pred cccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcc
Q 010462 402 EFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRK 461 (510)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 461 (510)
.. +..+++|+.|++++|+ ++.+. | +..+++|+.|++++|+.
T Consensus 305 ~~-----------l~~l~~L~~L~L~~n~-l~~~~-----~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 305 EV-----------IGGLTNLTTLFLSQNH-ITDIR-----P--LASLSKMDSADFANQVI 345 (347)
T ss_dssp HH-----------HHTCTTCSEEECCSSS-CCCCG-----G--GGGCTTCSEESSSCC--
T ss_pred hH-----------hhccccCCEEEccCCc-ccccc-----C--hhhhhccceeehhhhcc
Confidence 11 3478999999999986 54432 2 46899999999999964
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-27 Score=244.10 Aligned_cols=148 Identities=20% Similarity=0.145 Sum_probs=121.5
Q ss_pred EEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccccc
Q 010462 86 HLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEK 164 (510)
Q Consensus 86 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~ 164 (510)
.+...+.....+|..+. ++++.|++++|. +..+.+..|..+++|++|+++ +|.+..+ |..|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~------~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~i~~i~~~~~~~ 74 (570)
T 2z63_A 11 TYQCMELNFYKIPDNLP------FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLS-------RCEIQTIEDGAYQS 74 (570)
T ss_dssp EEECCSSCCSSCCSSSC------SSCCEEECCSCC---CCEECTTTTTTCSSCCEEECT-------TCCCCEECTTTTTT
T ss_pred EEEeCCCCccccCCCcc------ccccEEEccCCc---cCccChhHhhCCCCceEEECC-------CCcCCccCcccccC
Confidence 34444445555665443 579999999998 555566679999999999999 9988888 467899
Q ss_pred cCccceEeccCCCCccccc-hhhhcccccceeccCCCCccccCch-hhhccccCceeecCCCcccc-cccccccCccccc
Q 010462 165 LLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLR-YLPAGIGELIRLR 241 (510)
Q Consensus 165 l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~ 241 (510)
+++|++|++++|. +..+| ..+.++++|++|++++|. +..+|. .++++++|++|++++|.... .+|..++++++|+
T Consensus 75 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 152 (570)
T 2z63_A 75 LSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (570)
T ss_dssp CTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred chhCCEEeCcCCc-CCccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCC
Confidence 9999999999999 66665 679999999999999998 777665 58999999999999996544 4789999999999
Q ss_pred ccCcEEEeCc
Q 010462 242 SVRKFVVGGG 251 (510)
Q Consensus 242 ~L~l~~~~~~ 251 (510)
+|++..+...
T Consensus 153 ~L~l~~n~l~ 162 (570)
T 2z63_A 153 HLDLSSNKIQ 162 (570)
T ss_dssp EEECTTSCCC
T ss_pred EEeCcCCccc
Confidence 9998776554
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.5e-27 Score=239.09 Aligned_cols=349 Identities=16% Similarity=0.115 Sum_probs=230.9
Q ss_pred EEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccC
Q 010462 88 MLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLL 166 (510)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~ 166 (510)
+..++.+..+|..+ .++|++|++++|. +..+.|..|..+++|++|+++ +|.+..++ ..|++++
T Consensus 11 ~~~~~~l~~ip~~~------~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~i~~~~~~~~~~l~ 74 (549)
T 2z81_A 11 DGRSRSFTSIPSGL------TAAMKSLDLSFNK---ITYIGHGDLRACANLQVLILK-------SSRINTIEGDAFYSLG 74 (549)
T ss_dssp ECTTSCCSSCCSCC------CTTCCEEECCSSC---CCEECSSTTSSCTTCCEEECT-------TSCCCEECTTTTTTCT
T ss_pred ECCCCccccccccC------CCCccEEECcCCc---cCccChhhhhcCCcccEEECC-------CCCcCccChhhccccc
Confidence 34444555556544 3789999999998 556567779999999999999 99988884 7899999
Q ss_pred ccceEeccCCCCccccch-hhhcccccceeccCCCCccc--cCchhhhccccCceeecCCCccccccc-ccccCcccccc
Q 010462 167 HLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLR--ELPRGIGKLRKLMYLHNEGTDSLRYLP-AGIGELIRLRS 242 (510)
Q Consensus 167 ~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~ 242 (510)
+|++|++++|. +..+|. .++++++|++|++++|. +. ..|..++++++|++|++++|.....+| ..++.+++|+.
T Consensus 75 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 75 SLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp TCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred cCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 99999999999 666665 59999999999999998 55 456789999999999999997666676 57999999999
Q ss_pred cCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCC------
Q 010462 243 VRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRR------ 316 (510)
Q Consensus 243 L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~------ 316 (510)
|++..+... ......+..+++|+.+++..... ... ....+..+++|+.|++++|.............
T Consensus 153 L~L~~n~l~---~~~~~~l~~l~~L~~L~l~~n~~-~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 225 (549)
T 2z81_A 153 LEIKALSLR---NYQSQSLKSIRDIHHLTLHLSES-AFL---LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225 (549)
T ss_dssp EEEEETTCC---EECTTTTTTCSEEEEEEEECSBS-TTH---HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCC
T ss_pred eeccCCccc---ccChhhhhccccCceEecccCcc-ccc---chhhHhhcccccEEEccCCccccccccccchhhhhhcc
Confidence 999988765 33455667777788888775332 111 12223457888888888887544211000000
Q ss_pred --------CCcchhhHhhhccCC------------------------------C--------------------------
Q 010462 317 --------ENEEDEDERLLEALG------------------------------P-------------------------- 332 (510)
Q Consensus 317 --------~~~~~~~~~~~~~l~------------------------------~-------------------------- 332 (510)
...+.....+...+. .
T Consensus 226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~ 305 (549)
T 2z81_A 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305 (549)
T ss_dssp CEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH
T ss_pred cceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhh
Confidence 000000111111111 1
Q ss_pred ---CCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCC----CCCCCCccceeeccCccccEEecccccC
Q 010462 333 ---PPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLP----PLGKLPSLEYLEIEGMKSVKRVGNEFLG 405 (510)
Q Consensus 333 ---~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~----~~~~l~~L~~L~L~~~~~l~~~~~~~~~ 405 (510)
.++|+.|++++|.... +|..++..+++|++|++++|...+.+| .++.+++|++|+|++|. ++.++.. +
T Consensus 306 ~~~~~~L~~L~l~~n~l~~--ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--~ 380 (549)
T 2z81_A 306 YSLLEKVKRITVENSKVFL--VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKT--G 380 (549)
T ss_dssp HHHSTTCCEEEEESSCCCC--CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHH--H
T ss_pred hhhcccceEEEeccCcccc--CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccc--h
Confidence 1346666666666554 662233467777777777775544332 25667777777777765 3333210 0
Q ss_pred CCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCC
Q 010462 406 VESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRC 483 (510)
Q Consensus 406 ~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 483 (510)
..+..+++|+.|+++++. ++. +|..+..+++|+.|++++|. ++.+|..+ .++|+.|++++|
T Consensus 381 -------~~~~~l~~L~~L~Ls~N~-l~~------lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~--~~~L~~L~Ls~N 441 (549)
T 2z81_A 381 -------EILLTLKNLTSLDISRNT-FHP------MPDSCQWPEKMRFLNLSSTG-IRVVKTCI--PQTLEVLDVSNN 441 (549)
T ss_dssp -------HHGGGCTTCCEEECTTCC-CCC------CCSCCCCCTTCCEEECTTSC-CSCCCTTS--CTTCSEEECCSS
T ss_pred -------hhhhcCCCCCEEECCCCC-Ccc------CChhhcccccccEEECCCCC-cccccchh--cCCceEEECCCC
Confidence 002356777777777763 432 34445667778888887774 55666443 357888888777
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=248.04 Aligned_cols=349 Identities=14% Similarity=0.090 Sum_probs=215.9
Q ss_pred eEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccc-ccccc-cccc
Q 010462 85 LHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTN-FIKKI-PTNI 162 (510)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l-p~~i 162 (510)
+..+..+.....+|. + .+++++|++++|. +..+.|..|..+++|++|+++ +| .+..+ |..|
T Consensus 7 ~~~dcs~~~L~~vP~-l------p~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs-------~n~~~~~i~~~~f 69 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-V------LNTTERLLLSFNY---IRTVTASSFPFLEQLQLLELG-------SQYTPLTIDKEAF 69 (844)
T ss_dssp EEEEESCCCSSCCCS-S------CTTCCEEEEESCC---CCEECSSSCSSCCSCSEEEEC-------TTCCCCEECTTTT
T ss_pred eEEEccCCCCCCCCC-C------CCCcCEEECCCCc---CCccChhHCcccccCeEEeCC-------CCCCccccCHHHh
Confidence 345566666666665 3 4789999999998 566567789999999999999 77 46677 7889
Q ss_pred cccCccceEeccCCCCccc-cchhhhcccccceeccCCCCccccCchh--hhccccCceeecCCCccccccc-ccccCcc
Q 010462 163 EKLLHLKYLSLFGQKKIEK-LPETLCELYNLERLNVDHCKNLRELPRG--IGKLRKLMYLHNEGTDSLRYLP-AGIGELI 238 (510)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~-lp~~~~~l~~L~~L~L~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~ 238 (510)
.++++|++|+|++|. +.. .|.++.++++|++|+|++|......|.. +.++++|++|++++|......+ ..+++++
T Consensus 70 ~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~ 148 (844)
T 3j0a_A 70 RNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148 (844)
T ss_dssp SSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred cCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC
Confidence 999999999999999 555 4889999999999999999955556665 8999999999999996654433 5689999
Q ss_pred cccccCcEEEeCccCCccCccccccc--ccCCCceecCcccCCChhhhhHhhccCCC------CCCeEEEEecCCCCCCc
Q 010462 239 RLRSVRKFVVGGGYDRACSLGSLKKL--NLLRDCRIRGLGDVSDAGEARRAELEKKK------SLLKLGLHFGHSRDGDE 310 (510)
Q Consensus 239 ~L~~L~l~~~~~~~~~~~~~~~l~~l--~~L~~l~i~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~ 310 (510)
+|++|++..+.... .....+..+ ++|+.+++........ ....+..+. .|+.|+++.|.......
T Consensus 149 ~L~~L~Ls~N~i~~---~~~~~l~~l~~~~L~~L~L~~n~l~~~----~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 221 (844)
T 3j0a_A 149 SLKSIDFSSNQIFL---VCEHELEPLQGKTLSFFSLAANSLYSR----VSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221 (844)
T ss_dssp SCCEEEEESSCCCC---CCSGGGHHHHHCSSCCCEECCSBSCCC----CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTT
T ss_pred CCCEEECCCCcCCe---eCHHHcccccCCccceEECCCCccccc----cccchhhcCCccccCceeEEecCCCcCchhHH
Confidence 99999998776653 234455555 6788888876432211 111222222 48889988875322111
Q ss_pred ccccCCCC-------------------cchhhHhhhccCCC--CCCccEEEEeecCCccCCCchhHHhhhhcccceeccC
Q 010462 311 ERAGRREN-------------------EEDEDERLLEALGP--PPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFG 369 (510)
Q Consensus 311 ~~~~~~~~-------------------~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~ 369 (510)
........ ...........+.. +++|+.|++++|..... .| ..+..+++|+.|++++
T Consensus 222 ~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~-~~-~~~~~l~~L~~L~L~~ 299 (844)
T 3j0a_A 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL-NS-RVFETLKDLKVLNLAY 299 (844)
T ss_dssp SGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE-CS-CCSSSCCCCCEEEEES
T ss_pred HHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc-Ch-hhhhcCCCCCEEECCC
Confidence 10000000 00000001111111 25666777766665541 23 4555666777777766
Q ss_pred ccCCCcCCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccC
Q 010462 370 WRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIM 448 (510)
Q Consensus 370 ~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l 448 (510)
|......+. ++.+++|++|+|++|. +..+.... +..+++|+.|+++++. +..+ .+..+..+
T Consensus 300 n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~N~-i~~~-----~~~~~~~l 361 (844)
T 3j0a_A 300 NKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSN-----------FYGLPKVAYIDLQKNH-IAII-----QDQTFKFL 361 (844)
T ss_dssp CCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSCS-----------CSSCTTCCEEECCSCC-CCCC-----CSSCSCSC
T ss_pred CcCCCCChHHhcCCCCCCEEECCCCC-CCccCHHH-----------hcCCCCCCEEECCCCC-CCcc-----ChhhhcCC
Confidence 654444443 6666677777776665 22221111 2355666666666553 3222 22334455
Q ss_pred cccceeeeccCcccccCCcccCCCCCCcEEEEcCC
Q 010462 449 PRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRC 483 (510)
Q Consensus 449 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 483 (510)
++|+.|++++|. ++.++. +++|+.|++++|
T Consensus 362 ~~L~~L~Ls~N~-l~~i~~----~~~L~~L~l~~N 391 (844)
T 3j0a_A 362 EKLQTLDLRDNA-LTTIHF----IPSIPDIFLSGN 391 (844)
T ss_dssp CCCCEEEEETCC-SCCCSS----CCSCSEEEEESC
T ss_pred CCCCEEECCCCC-CCcccC----CCCcchhccCCC
Confidence 666666666653 333332 444455554444
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=226.02 Aligned_cols=255 Identities=17% Similarity=0.121 Sum_probs=172.8
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
+.+++|++.++.+...+ .+. .+++|++|++++|. +.. +| +..+++|++|+++ +|.+..+|
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~----~l~~L~~L~Ls~n~---l~~-~~--~~~l~~L~~L~Ls-------~N~l~~~~-- 101 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIE----KLTGLTKLICTSNN---ITT-LD--LSQNTNLTYLACD-------SNKLTNLD-- 101 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGG----GCTTCSEEECCSSC---CSC-CC--CTTCTTCSEEECC-------SSCCSCCC--
T ss_pred CCCCEEEccCCCcccCh-hhc----ccCCCCEEEccCCc---CCe-Ec--cccCCCCCEEECc-------CCCCceee--
Confidence 67888888888776554 333 78888888888887 333 23 7778888888888 77777775
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
++++++|++|++++|. ++.+| ++.+++|++|++++|. +..+| ++.+++|++|++++|..+..+ .++.+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 7788888888888887 66675 7788888888888887 55564 778888888888888655555 367778888
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcch
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEED 321 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 321 (510)
.|++..+.... +. +..+++|+.+++.+..- ... .+..+++|+.|++++|...
T Consensus 174 ~L~ls~n~l~~-----l~-l~~l~~L~~L~l~~N~l-~~~------~l~~l~~L~~L~Ls~N~l~--------------- 225 (457)
T 3bz5_A 174 TLDCSFNKITE-----LD-VSQNKLLNRLNCDTNNI-TKL------DLNQNIQLTFLDCSSNKLT--------------- 225 (457)
T ss_dssp EEECCSSCCCC-----CC-CTTCTTCCEEECCSSCC-SCC------CCTTCTTCSEEECCSSCCS---------------
T ss_pred EEECCCCccce-----ec-cccCCCCCEEECcCCcC-Cee------ccccCCCCCEEECcCCccc---------------
Confidence 88877765543 11 55666677777665321 111 3566778888888777511
Q ss_pred hhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhh-------cccceeccCccCCCcCCCCCCCCccceeeccCcc
Q 010462 322 EDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLT-------NLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMK 394 (510)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~-------~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~ 394 (510)
. ++ +..+++|+.|++++|.... +|...+..++ +|+.|++++|...+.+| .+.+++|+.|++++|.
T Consensus 226 --~-ip--~~~l~~L~~L~l~~N~l~~--~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 226 --E-ID--VTPLTQLTYFDCSVNPLTE--LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNT 297 (457)
T ss_dssp --C-CC--CTTCTTCSEEECCSSCCSC--CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCT
T ss_pred --c-cC--ccccCCCCEEEeeCCcCCC--cCHHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCc
Confidence 1 22 5667788888888887766 4422222222 34455555555444444 4567777777777777
Q ss_pred ccEEec
Q 010462 395 SVKRVG 400 (510)
Q Consensus 395 ~l~~~~ 400 (510)
.+..++
T Consensus 298 ~l~~l~ 303 (457)
T 3bz5_A 298 QLYLLD 303 (457)
T ss_dssp TCCEEE
T ss_pred ccceec
Confidence 666554
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-26 Score=238.74 Aligned_cols=269 Identities=17% Similarity=0.095 Sum_probs=183.5
Q ss_pred eEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccccc
Q 010462 85 LHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIE 163 (510)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~ 163 (510)
+.++..+.....+|..+. +++++|++++|. +..+.+..|..+++|++|+++ ++.+..+ |..++
T Consensus 7 ~~~~cs~~~L~~ip~~~~------~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~~~~~ 70 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP------TNITVLNLTHNQ---LRRLPAANFTRYSQLTSLDVG-------FNTISKLEPELCQ 70 (680)
T ss_dssp SEEECCSSCCSSCCSCSC------TTCSEEECCSSC---CCCCCGGGGGGGTTCSEEECC-------SSCCCCCCTTHHH
T ss_pred CeeECCCCCccccccccC------CCCcEEECCCCC---CCCcCHHHHhCCCcCcEEECC-------CCccCccCHHHHh
Confidence 345666666666666543 789999999998 556567779999999999999 8888877 67889
Q ss_pred ccCccceEeccCCCCccccch-hhhcccccceeccCCCCccccCc-hhhhccccCceeecCCCcccccccccccCccccc
Q 010462 164 KLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
++++|++|++++|. +..+|. .+.++++|++|++++|. +..+| ..++++++|++|++++|......|..++.+++|+
T Consensus 71 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 71 KLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp HCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred cccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence 99999999999998 888886 59999999999999998 55555 6799999999999999977666777889999999
Q ss_pred ccCcEEEeCccCCccCcccc--cccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCc
Q 010462 242 SVRKFVVGGGYDRACSLGSL--KKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE 319 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l--~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 319 (510)
.|++..+.... .....+ ..+++|+.+++.+... . ...+..+..+.+|+.+.+..+...
T Consensus 149 ~L~L~~n~l~~---~~~~~~~~~~~~~L~~L~L~~n~l-~---~~~~~~~~~l~~L~~L~l~~~~l~------------- 208 (680)
T 1ziw_A 149 ELLLSNNKIQA---LKSEELDIFANSSLKKLELSSNQI-K---EFSPGCFHAIGRLFGLFLNNVQLG------------- 208 (680)
T ss_dssp EEECCSSCCCC---BCHHHHGGGTTCEESEEECTTCCC-C---CBCTTGGGGSSEECEEECTTCCCH-------------
T ss_pred EEEccCCcccc---cCHHHhhccccccccEEECCCCcc-c---ccChhhhhhhhhhhhhhccccccC-------------
Confidence 99988776543 122222 2346778887775321 1 122334555666777666554310
Q ss_pred chhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhc--ccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 320 EDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTN--LRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 320 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~--L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
..........+ ..++|+.|++++|..... .| .++..++. |+.|++++|......+. ++.+++|++|++++|.
T Consensus 209 ~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~-~~-~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 209 PSLTEKLCLEL-ANTSIRNLSLSNSQLSTT-SN-TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp HHHHHHHHHHH-TTSCCCEEECTTSCCCEE-CT-TTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred hhhHHHHHHHh-hhccccEEEccCCccccc-Ch-hHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 00111111111 235666666666655441 23 45555443 66666666644433333 5666666666666654
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-26 Score=227.59 Aligned_cols=311 Identities=20% Similarity=0.240 Sum_probs=205.7
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+++++.|.+.++. +.. +|. +..+++|++|+++ ++.+..+|. +.++++|++|++++|. +..++. +
T Consensus 44 ~l~~l~~L~l~~~~---i~~-l~~-~~~l~~L~~L~Ls-------~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~ 108 (466)
T 1o6v_A 44 DLDQVTTLQADRLG---IKS-IDG-VEYLNNLTQINFS-------NNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-L 108 (466)
T ss_dssp HHHTCCEEECCSSC---CCC-CTT-GGGCTTCCEEECC-------SSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-G
T ss_pred HhccccEEecCCCC---Ccc-Ccc-hhhhcCCCEEECC-------CCccCCchh-hhccccCCEEECCCCc-cccChh-h
Confidence 57899999999997 444 454 8889999999999 999999877 8999999999999999 888877 9
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
.++++|++|++++|. +..+|. +.++++|++|++++|. +..++ .++.+++|+.|.+.. ... ....+..+++
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~-~~~-----~~~~~~~l~~ 178 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGN-QVT-----DLKPLANLTT 178 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEE-SCC-----CCGGGTTCTT
T ss_pred cCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCC-ccc-----CchhhccCCC
Confidence 999999999999998 777776 9999999999999995 45555 488899999998852 222 3344788889
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRG 346 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (510)
|+.|++.+... ... ..+..+++|+.|++++|....... +..+++|+.|++++|..
T Consensus 179 L~~L~l~~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~~~~~-------------------~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 179 LERLDISSNKV-SDI-----SVLAKLTNLESLIATNNQISDITP-------------------LGILTNLDELSLNGNQL 233 (466)
T ss_dssp CCEEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCCCCGG-------------------GGGCTTCCEEECCSSCC
T ss_pred CCEEECcCCcC-CCC-----hhhccCCCCCEEEecCCccccccc-------------------ccccCCCCEEECCCCCc
Confidence 99999887532 221 246778899999998886322111 23344555555555554
Q ss_pred ccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccccCC----------CCCCCCCccc
Q 010462 347 RRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGV----------ESDTDGSSVI 416 (510)
Q Consensus 347 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~----------~~~~~~~~~~ 416 (510)
.. ++ .+..+++|+.|++++|... .++.+..+++|++|++++|. +..++. +... ........+.
T Consensus 234 ~~--~~--~l~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~ 306 (466)
T 1o6v_A 234 KD--IG--TLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISPIS 306 (466)
T ss_dssp CC--CG--GGGGCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGGGG
T ss_pred cc--ch--hhhcCCCCCEEECCCCccc-cchhhhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchhhc
Confidence 43 33 3344555555555555322 22224444445555544443 211111 0000 0000000133
Q ss_pred cccccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCc
Q 010462 417 AFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 417 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 484 (510)
.+++|+.|++++|. +... .| +..+++|+.|++++| .+..++ .+..+++|+.|++++|+
T Consensus 307 ~l~~L~~L~L~~n~-l~~~-----~~--~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 307 NLKNLTYLTLYFNN-ISDI-----SP--VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp GCTTCSEEECCSSC-CSCC-----GG--GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECcCCc-CCCc-----hh--hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence 56666666666653 3322 12 357788888888888 445554 56778888888888885
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-26 Score=228.37 Aligned_cols=297 Identities=20% Similarity=0.127 Sum_probs=232.0
Q ss_pred CceeEEEEEeecCCCcc-ccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVP-IPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~ 160 (510)
..++.|++.++.+...+ ..+. .+++|+.|++++|. +..+.|..|..+++|++|+++ +|.+..+|.
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~ 97 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFA----SFPHLEELELNENI---VSAVEPGAFNNLFNLRTLGLR-------SNRLKLIPL 97 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTT----TCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCCSCCT
T ss_pred CCCcEEECCCCccceECHhHcc----CCCCCCEEECCCCc---cCEeChhhhhCCccCCEEECC-------CCcCCccCc
Confidence 78999999999887643 3444 99999999999998 666578889999999999999 999999975
Q ss_pred -cccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccc
Q 010462 161 -NIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIR 239 (510)
Q Consensus 161 -~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 239 (510)
.+.++++|++|++++|.+....|..+.++++|++|++++|......|..+..+++|++|++++|......+..+..+++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 4788999999999999944445678999999999999999955555678999999999999999554433455889999
Q ss_pred ccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCc
Q 010462 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE 319 (510)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 319 (510)
|+.|++..+.... .....+..+++|+.|++.++...... ........+|+.|++++|....
T Consensus 178 L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~------------ 238 (477)
T 2id5_A 178 LIVLRLRHLNINA---IRDYSFKRLYRLKVLEISHWPYLDTM----TPNCLYGLNLTSLSITHCNLTA------------ 238 (477)
T ss_dssp CCEEEEESCCCCE---ECTTCSCSCTTCCEEEEECCTTCCEE----CTTTTTTCCCSEEEEESSCCCS------------
T ss_pred CcEEeCCCCcCcE---eChhhcccCcccceeeCCCCcccccc----CcccccCccccEEECcCCcccc------------
Confidence 9999998876653 23345677888999998875443322 1222334589999999987221
Q ss_pred chhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEE
Q 010462 320 EDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKR 398 (510)
Q Consensus 320 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~ 398 (510)
.....+..+++|+.|++++|.+.. ++...+..+++|+.|+|++|......|. +..+++|+.|+|++|. ++.
T Consensus 239 -----~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~ 310 (477)
T 2id5_A 239 -----VPYLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTT 310 (477)
T ss_dssp -----CCHHHHTTCTTCCEEECCSSCCCE--ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSC
T ss_pred -----cCHHHhcCccccCeeECCCCcCCc--cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-Cce
Confidence 112346678999999999999876 5536678899999999999976665554 8899999999999986 555
Q ss_pred ecccccCCCCCCCCCccccccccccccccccc
Q 010462 399 VGNEFLGVESDTDGSSVIAFPKLKHLTFWVMN 430 (510)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 430 (510)
++... +..+++|+.|++++++
T Consensus 311 ~~~~~-----------~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 311 LEESV-----------FHSVGNLETLILDSNP 331 (477)
T ss_dssp CCGGG-----------BSCGGGCCEEECCSSC
T ss_pred eCHhH-----------cCCCcccCEEEccCCC
Confidence 55433 2468899999998765
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.7e-26 Score=221.07 Aligned_cols=305 Identities=15% Similarity=0.089 Sum_probs=235.9
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~ 160 (510)
..++++++.++.+..++..+. ..+++|++|++++|. +..+.+..|..+++|++|+++ ++.+..+ |.
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~---~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~ 111 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALL---DSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMG-------FNAIRYLPPH 111 (390)
T ss_dssp CCCSEEEEESCEESEECTHHH---HHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCCCCCTT
T ss_pred CCceEEEecCCchhhCChhHh---cccccCcEEECCCCc---ccccChhhccCCCCcCEEECC-------CCCCCcCCHH
Confidence 788999999998887665532 389999999999998 556566679999999999999 9998888 46
Q ss_pred cccccCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIR 239 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 239 (510)
.++++++|++|++++|. ++.+|.. +.++++|++|++++|......|..+..+++|++|++++|.. ..+ .++.+++
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~--~~~~l~~ 187 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THV--DLSLIPS 187 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBC--CGGGCTT
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-Ccc--ccccccc
Confidence 68899999999999999 8888876 58899999999999994444456689999999999999954 333 3667888
Q ss_pred ccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCc
Q 010462 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE 319 (510)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 319 (510)
|+.|++..+... .+.....|+.+++.+... ... .....++|+.|++++|....
T Consensus 188 L~~L~l~~n~l~--------~~~~~~~L~~L~l~~n~l-~~~------~~~~~~~L~~L~l~~n~l~~------------ 240 (390)
T 3o6n_A 188 LFHANVSYNLLS--------TLAIPIAVEELDASHNSI-NVV------RGPVNVELTILKLQHNNLTD------------ 240 (390)
T ss_dssp CSEEECCSSCCS--------EEECCSSCSEEECCSSCC-CEE------ECCCCSSCCEEECCSSCCCC------------
T ss_pred cceeeccccccc--------ccCCCCcceEEECCCCee-eec------cccccccccEEECCCCCCcc------------
Confidence 888887655333 334445677777765321 111 11234789999999987221
Q ss_pred chhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEE
Q 010462 320 EDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKR 398 (510)
Q Consensus 320 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~ 398 (510)
...+..+++|++|++++|..... .| ..+..+++|++|++++|... .++. ...+++|++|+|++|. +..
T Consensus 241 -------~~~l~~l~~L~~L~Ls~n~l~~~-~~-~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~-l~~ 309 (390)
T 3o6n_A 241 -------TAWLLNYPGLVEVDLSYNELEKI-MY-HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH-LLH 309 (390)
T ss_dssp -------CGGGGGCTTCSEEECCSSCCCEE-ES-GGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSC-CCC
T ss_pred -------cHHHcCCCCccEEECCCCcCCCc-Ch-hHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCc-cee
Confidence 13567789999999999988762 35 78889999999999999554 4444 6789999999999986 555
Q ss_pred ecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCccc
Q 010462 399 VGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKL 462 (510)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 462 (510)
++.. +..+++|+.|++++++ ++.+. +..+++|+.|++++|+.-
T Consensus 310 ~~~~------------~~~l~~L~~L~L~~N~-i~~~~--------~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 310 VERN------------QPQFDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CGGG------------HHHHTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSCEE
T ss_pred cCcc------------ccccCcCCEEECCCCc-cceeC--------chhhccCCEEEcCCCCcc
Confidence 5433 3478999999999986 55543 357899999999999764
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-25 Score=229.31 Aligned_cols=371 Identities=16% Similarity=0.089 Sum_probs=237.1
Q ss_pred CCceeEEEEEeecCCCccc-cccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc
Q 010462 81 ETKILHLMLTLHRGASVPI-PIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP 159 (510)
Q Consensus 81 ~~~~~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp 159 (510)
+..+++|++.++.+..++. .+. ++++|++|++++|+ +..+.+.+|..+++|++|+|+ +|.+..+|
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~----~l~~L~~L~Ls~N~---i~~i~~~~f~~L~~L~~L~Ls-------~N~l~~l~ 116 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFF----SFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILT-------GNPIQSLA 116 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TCCCCEEC
T ss_pred CcCCCEEEeeCCCCCCCCHHHHh----CCCCCCEEECCCCc---CCCcChhHhcCCCCCCEEEcc-------CCcCCCCC
Confidence 3789999999999887553 444 99999999999998 666677789999999999999 99999996
Q ss_pred -ccccccCccceEeccCCCCccccch-hhhcccccceeccCCCCccc-cCchhhhccccCceeecCCCcccccccccccC
Q 010462 160 -TNIEKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLR-ELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGE 236 (510)
Q Consensus 160 -~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 236 (510)
..|.++.+|++|++++|. ++.+|. .++++++|++|++++|.... ..|..++.+++|++|++++|......|..+..
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp GGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred HHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc
Confidence 468899999999999999 777775 58999999999999998332 46788899999999999998543333333332
Q ss_pred cccccccCc---------------------------E-------------------------EEeCcc------CCc---
Q 010462 237 LIRLRSVRK---------------------------F-------------------------VVGGGY------DRA--- 255 (510)
Q Consensus 237 l~~L~~L~l---------------------------~-------------------------~~~~~~------~~~--- 255 (510)
+.+++.+.. . ...... ...
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred hhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence 222211100 0 000000 000
Q ss_pred ---------------------c----------------------CcccccccccCCCceecCccc--CCCh---------
Q 010462 256 ---------------------C----------------------SLGSLKKLNLLRDCRIRGLGD--VSDA--------- 281 (510)
Q Consensus 256 ---------------------~----------------------~~~~l~~l~~L~~l~i~~~~~--~~~~--------- 281 (510)
. .+..+.....++.+.+.++.. +...
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~ 355 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 355 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEE
T ss_pred ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcc
Confidence 0 000011111222233222110 0000
Q ss_pred ----hhhhHhhccCCCCCCeEEEEecCCCCCCccc---ccC-----------------------CC-------CcchhhH
Q 010462 282 ----GEARRAELEKKKSLLKLGLHFGHSRDGDEER---AGR-----------------------RE-------NEEDEDE 324 (510)
Q Consensus 282 ----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~-----------------------~~-------~~~~~~~ 324 (510)
..........+++|+.++++.+......... ... .. .......
T Consensus 356 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 435 (635)
T 4g8a_A 356 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 435 (635)
T ss_dssp EESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEEST
T ss_pred cccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccc
Confidence 0000011223556666666655432110000 000 00 0000001
Q ss_pred hhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCc-CCC-CCCCCccceeeccCccccEEeccc
Q 010462 325 RLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEH-LPP-LGKLPSLEYLEIEGMKSVKRVGNE 402 (510)
Q Consensus 325 ~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~-l~~-~~~l~~L~~L~L~~~~~l~~~~~~ 402 (510)
.....+..+++++.++++++.... .+...+..+++|+.|++++|..... .|. +..+++|++|+|++|. ++.++..
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~--~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~ 512 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT 512 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEE--CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT
T ss_pred cccccccccccccccccccccccc--ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChH
Confidence 112234556677778877777665 3325666788999999998865553 444 8889999999999987 6666443
Q ss_pred ccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCC-CCCcEEEEc
Q 010462 403 FLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQK-TTLQKLHIR 481 (510)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l-~~L~~L~l~ 481 (510)
. +..+++|+.|+++++. ++.+ .+..+..+++|+.|++++|......|..+..+ ++|+.|+++
T Consensus 513 ~-----------f~~l~~L~~L~Ls~N~-l~~l-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 513 A-----------FNSLSSLQVLNMSHNN-FFSL-----DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp T-----------TTTCTTCCEEECTTSC-CCBC-----CCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred H-----------HcCCCCCCEEECCCCc-CCCC-----ChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence 2 3478999999998874 4443 35556789999999999997655566677777 689999999
Q ss_pred CCcch
Q 010462 482 RCPIL 486 (510)
Q Consensus 482 ~c~~l 486 (510)
+||.-
T Consensus 576 ~Np~~ 580 (635)
T 4g8a_A 576 QNDFA 580 (635)
T ss_dssp TCCBC
T ss_pred CCCCc
Confidence 98853
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-25 Score=229.69 Aligned_cols=305 Identities=15% Similarity=0.087 Sum_probs=235.5
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-T 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~ 160 (510)
..++.+.+.++.+..+|..+. ..+++|++|++++|. +..+.|..|..+++|++|+++ +|.+..+| .
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~---~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~ 117 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALL---DSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMG-------FNAIRYLPPH 117 (597)
T ss_dssp CCCSEEEESSCEESEECTHHH---HHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCCCCCTT
T ss_pred CCceEEEeeCCCCCCcCHHHH---ccCCCCcEEECCCCC---CCCCChHHhcCCCCCCEEECC-------CCcCCCCCHH
Confidence 678899999888777665542 379999999999998 556567679999999999999 99988885 5
Q ss_pred cccccCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIR 239 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 239 (510)
.|+++++|++|++++|. +..+|.. ++++++|++|++++|......|..++.+++|++|++++|.. ..++ ++.+++
T Consensus 118 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~--~~~l~~ 193 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPS 193 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC--GGGCTT
T ss_pred HHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC--hhhhhh
Confidence 57899999999999999 8888876 58999999999999995555566799999999999999954 4443 566788
Q ss_pred ccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCc
Q 010462 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE 319 (510)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 319 (510)
|+.|++..+.. ..+.....|+.|++.+... .... ....++|+.|++++|....
T Consensus 194 L~~L~l~~n~l--------~~l~~~~~L~~L~ls~n~l-~~~~------~~~~~~L~~L~L~~n~l~~------------ 246 (597)
T 3oja_B 194 LFHANVSYNLL--------STLAIPIAVEELDASHNSI-NVVR------GPVNVELTILKLQHNNLTD------------ 246 (597)
T ss_dssp CSEEECCSSCC--------SEEECCTTCSEEECCSSCC-CEEE------CSCCSCCCEEECCSSCCCC------------
T ss_pred hhhhhcccCcc--------ccccCCchhheeeccCCcc-cccc------cccCCCCCEEECCCCCCCC------------
Confidence 88888765433 3344455677777765321 1111 1123689999999987221
Q ss_pred chhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEE
Q 010462 320 EDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKR 398 (510)
Q Consensus 320 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~ 398 (510)
+..+..+++|+.|++++|.+... .| ..+..+++|+.|+|++|.... +|. .+.+++|+.|+|++|. +..
T Consensus 247 -------~~~l~~l~~L~~L~Ls~N~l~~~-~~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~-l~~ 315 (597)
T 3oja_B 247 -------TAWLLNYPGLVEVDLSYNELEKI-MY-HPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH-LLH 315 (597)
T ss_dssp -------CGGGGGCTTCSEEECCSSCCCEE-ES-GGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSC-CCC
T ss_pred -------ChhhccCCCCCEEECCCCccCCC-CH-HHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCC-CCc
Confidence 24567789999999999998762 35 788899999999999995544 454 7789999999999987 555
Q ss_pred ecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCccc
Q 010462 399 VGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKL 462 (510)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 462 (510)
++.. +..+++|+.|+++++. +..+. +..+++|+.|++++|+..
T Consensus 316 i~~~------------~~~l~~L~~L~L~~N~-l~~~~--------~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 316 VERN------------QPQFDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CGGG------------HHHHTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSCEE
T ss_pred cCcc------------cccCCCCCEEECCCCC-CCCcC--------hhhcCCCCEEEeeCCCCC
Confidence 5433 3478999999999986 55442 357899999999999764
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=206.97 Aligned_cols=232 Identities=22% Similarity=0.285 Sum_probs=164.0
Q ss_pred cCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhcc
Q 010462 134 KLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKL 213 (510)
Q Consensus 134 ~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l 213 (510)
...++++|+++ ++.+..+|..++++++|++|++++|. +..+|..++++++|++|++++|. +..+|..++++
T Consensus 79 ~~~~l~~L~L~-------~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l 149 (328)
T 4fcg_A 79 TQPGRVALELR-------SVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASL 149 (328)
T ss_dssp TSTTCCEEEEE-------SSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGC
T ss_pred cccceeEEEcc-------CCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcC
Confidence 35789999999 88888999889999999999999998 77899889999999999999998 66889889999
Q ss_pred ccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCC
Q 010462 214 RKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKK 293 (510)
Q Consensus 214 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~ 293 (510)
++|++|++++|.....+|..++... .. ..+..++
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~------------------~~----------------------------~~~~~l~ 183 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTD------------------AS----------------------------GEHQGLV 183 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-------------------C----------------------------CCEEEST
T ss_pred cCCCEEECCCCCCccccChhHhhcc------------------ch----------------------------hhhccCC
Confidence 9999999999877777776543210 00 0123345
Q ss_pred CCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCC
Q 010462 294 SLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNC 373 (510)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~ 373 (510)
+|+.|++++|.. . .++..+..+++|++|++++|.+.. +| ..+..+++|++|++++|...
T Consensus 184 ~L~~L~L~~n~l-----------------~-~lp~~l~~l~~L~~L~L~~N~l~~--l~-~~l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 184 NLQSLRLEWTGI-----------------R-SLPASIANLQNLKSLKIRNSPLSA--LG-PAIHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp TCCEEEEEEECC-----------------C-CCCGGGGGCTTCCEEEEESSCCCC--CC-GGGGGCTTCCEEECTTCTTC
T ss_pred CCCEEECcCCCc-----------------C-cchHhhcCCCCCCEEEccCCCCCc--Cc-hhhccCCCCCEEECcCCcch
Confidence 566666666641 1 233445556677777777776665 66 55666677777777776666
Q ss_pred CcCCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccc
Q 010462 374 EHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLS 452 (510)
Q Consensus 374 ~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~ 452 (510)
+.+|. ++.+++|++|+|++|.... .+|..+..+++|+
T Consensus 243 ~~~p~~~~~l~~L~~L~L~~n~~~~------------------------------------------~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 243 RNYPPIFGGRAPLKRLILKDCSNLL------------------------------------------TLPLDIHRLTQLE 280 (328)
T ss_dssp CBCCCCTTCCCCCCEEECTTCTTCC------------------------------------------BCCTTGGGCTTCC
T ss_pred hhhHHHhcCCCCCCEEECCCCCchh------------------------------------------hcchhhhcCCCCC
Confidence 65554 5556666666666554222 2233345677888
Q ss_pred eeeeccCcccccCCcccCCCCCCcEEEEcCC
Q 010462 453 SLTIWSCRKLKALPDHLLQKTTLQKLHIRRC 483 (510)
Q Consensus 453 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 483 (510)
.|+|++|+.++.+|..+.++++|+.+++..+
T Consensus 281 ~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 8888888777888888888888888877643
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-25 Score=217.78 Aligned_cols=299 Identities=20% Similarity=0.184 Sum_probs=228.2
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
++++|++|++++|. +.+ +| .+..+++|++|+++ ++.+..+| ++.+++|++|++++|. ++.+| +
T Consensus 40 ~l~~L~~L~Ls~n~---l~~-~~-~l~~l~~L~~L~Ls-------~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~ 102 (457)
T 3bz5_A 40 QLATLTSLDCHNSS---ITD-MT-GIEKLTGLTKLICT-------SNNITTLD--LSQNTNLTYLACDSNK-LTNLD--V 102 (457)
T ss_dssp HHTTCCEEECCSSC---CCC-CT-TGGGCTTCSEEECC-------SSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--C
T ss_pred HcCCCCEEEccCCC---ccc-Ch-hhcccCCCCEEEcc-------CCcCCeEc--cccCCCCCEEECcCCC-Cceee--c
Confidence 89999999999998 444 35 48999999999999 99998886 8899999999999999 77776 8
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
+++++|++|++++|. +..+| ++.+++|++|++++|.. ..++ ++.+++|+.|++..+.... .+ .+..+++
T Consensus 103 ~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l-~~l~--l~~l~~L~~L~l~~n~~~~----~~-~~~~l~~ 171 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTL-TEID--VSHNTQLTELDCHLNKKIT----KL-DVTPQTQ 171 (457)
T ss_dssp TTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCC-SCCC--CTTCTTCCEEECTTCSCCC----CC-CCTTCTT
T ss_pred CCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCcc-ceec--cccCCcCCEEECCCCCccc----cc-ccccCCc
Confidence 899999999999998 66776 89999999999999954 4453 7889999999987774432 11 4667788
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRG 346 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (510)
|+.|++.+..- ... .+..+++|+.|++++|... . . .+..+++|+.|++++|.+
T Consensus 172 L~~L~ls~n~l-~~l------~l~~l~~L~~L~l~~N~l~-----------------~-~--~l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 172 LTTLDCSFNKI-TEL------DVSQNKLLNRLNCDTNNIT-----------------K-L--DLNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp CCEEECCSSCC-CCC------CCTTCTTCCEEECCSSCCS-----------------C-C--CCTTCTTCSEEECCSSCC
T ss_pred CCEEECCCCcc-cee------ccccCCCCCEEECcCCcCC-----------------e-e--ccccCCCCCEEECcCCcc
Confidence 88888876422 221 2677899999999988622 1 1 367789999999999998
Q ss_pred ccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceee----------ccCccccEEecccccCCCCCCCCCccc
Q 010462 347 RRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLE----------IEGMKSVKRVGNEFLGVESDTDGSSVI 416 (510)
Q Consensus 347 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~----------L~~~~~l~~~~~~~~~~~~~~~~~~~~ 416 (510)
.. +| +..+++|+.|++++|.... +| .+.+++|+.|+ +++|..+..++ ..
T Consensus 225 ~~--ip---~~~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--------------~~ 283 (457)
T 3bz5_A 225 TE--ID---VTPLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--------------AE 283 (457)
T ss_dssp SC--CC---CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--------------CT
T ss_pred cc--cC---ccccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccCCCCCEEECCCCccCCccc--------------cc
Confidence 87 77 4688999999999995544 43 44555555554 44444333332 34
Q ss_pred cccccccccccccccccccccccc--cccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCc
Q 010462 417 AFPKLKHLTFWVMNALEELDFETA--IKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 417 ~~~~L~~L~l~~~~~L~~~~~~~~--~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 484 (510)
.+++|+.|++++|+.+..+..... ..-.+..+++|+.|++++|. ++.++ +..+++|+.|++++|.
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc-ccccc--cccCCcCcEEECCCCC
Confidence 789999999999986655542110 00124567899999999884 56664 7889999999999985
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-25 Score=206.32 Aligned_cols=248 Identities=19% Similarity=0.151 Sum_probs=166.4
Q ss_pred CceeEEEEEeecCCC---ccccccccccCCCCccEEEecc-CCcCccccchhHhhhcCCceeEEEeccccccccccccc-
Q 010462 82 TKILHLMLTLHRGAS---VPIPIWDNVKGLRGLRSLLVES-GEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIK- 156 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~- 156 (510)
.++++|++.++.+.. .+..+. ++++|++|++++ |. +...+|..|..+++|++|+++ +|.+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~----~l~~L~~L~L~~~n~---l~~~~p~~l~~l~~L~~L~Ls-------~n~l~~ 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA----NLPYLNFLYIGGINN---LVGPIPPAIAKLTQLHYLYIT-------HTNVSG 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG----GCTTCSEEEEEEETT---EESCCCGGGGGCTTCSEEEEE-------EECCEE
T ss_pred ceEEEEECCCCCccCCcccChhHh----CCCCCCeeeCCCCCc---ccccCChhHhcCCCCCEEECc-------CCeeCC
Confidence 467778887777652 344343 778888888874 65 443466667778888888887 77765
Q ss_pred cccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccc-cCceeecCCCccccccccccc
Q 010462 157 KIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLR-KLMYLHNEGTDSLRYLPAGIG 235 (510)
Q Consensus 157 ~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~~p~~l~ 235 (510)
.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.....+|..++.++ +|++|++++|.....+|..++
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 5677777788888888888873336777777888888888888774447777777777 788888887765556666666
Q ss_pred CcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccC
Q 010462 236 ELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGR 315 (510)
Q Consensus 236 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 315 (510)
.++ |+.|++..+.... ..+..+..+++|+.|++++|..
T Consensus 196 ~l~-L~~L~Ls~N~l~~-------------------------------~~~~~~~~l~~L~~L~L~~N~l---------- 233 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEG-------------------------------DASVLFGSDKNTQKIHLAKNSL---------- 233 (313)
T ss_dssp GCC-CSEEECCSSEEEE-------------------------------CCGGGCCTTSCCSEEECCSSEE----------
T ss_pred CCc-ccEEECcCCcccC-------------------------------cCCHHHhcCCCCCEEECCCCce----------
Confidence 654 6665554433221 1122344556667777766641
Q ss_pred CCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccc
Q 010462 316 RENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKS 395 (510)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~ 395 (510)
. ..+..+..+++|++|++++|.+... +| .++..+++|++|++++|...+.+|..+.+++|+.|++.+|+.
T Consensus 234 -------~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~p-~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 234 -------A-FDLGKVGLSKNLNGLDLRNNRIYGT-LP-QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp -------C-CBGGGCCCCTTCCEEECCSSCCEEC-CC-GGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred -------e-eecCcccccCCCCEEECcCCcccCc-CC-hHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence 1 1122255667788888888777632 66 677778888888888887666777777777777777777763
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=204.77 Aligned_cols=243 Identities=19% Similarity=0.172 Sum_probs=137.6
Q ss_pred ceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccc
Q 010462 83 KILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTN 161 (510)
Q Consensus 83 ~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~ 161 (510)
.++.+.+.++....+|..+ .++++.|++++|. +..+.+..|..+++|++|+++ ++.+..+ |..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~------~~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL------PPDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILI-------NNKISKISPGA 95 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC------CTTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECC-------SSCCCCBCTTT
T ss_pred CCeEEEecCCCccccCccC------CCCCeEEECCCCc---CCEeChhhhccCCCCCEEECC-------CCcCCeeCHHH
Confidence 3445555555555444433 2566677777766 444344456667777777776 6666665 566
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCc-hhhhccccCceeecCCCcccc--cccccccCcc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGTDSLR--YLPAGIGELI 238 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~--~~p~~l~~l~ 238 (510)
+.++++|++|++++|. ++.+|..+. ++|++|++++|. +..++ ..+.++++|++|++++|.... ..+..++.++
T Consensus 96 ~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp TTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred hcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 6667777777777766 666665443 567777777766 33333 345666777777776664321 3334445555
Q ss_pred cccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCC
Q 010462 239 RLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRREN 318 (510)
Q Consensus 239 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 318 (510)
+|+.|++..+.... ++. .+ .++|+.|++++|.
T Consensus 172 ~L~~L~l~~n~l~~-------------------------l~~-------~~--~~~L~~L~l~~n~-------------- 203 (330)
T 1xku_A 172 KLSYIRIADTNITT-------------------------IPQ-------GL--PPSLTELHLDGNK-------------- 203 (330)
T ss_dssp TCCEEECCSSCCCS-------------------------CCS-------SC--CTTCSEEECTTSC--------------
T ss_pred CcCEEECCCCcccc-------------------------CCc-------cc--cccCCEEECCCCc--------------
Confidence 55555443322211 000 00 1456666666554
Q ss_pred cchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccE
Q 010462 319 EEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVK 397 (510)
Q Consensus 319 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~ 397 (510)
.....+..+..+++|+.|++++|.... ++..++..+++|++|++++|... .+|. +..+++|++|++++|. ++
T Consensus 204 ---l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-i~ 276 (330)
T 1xku_A 204 ---ITKVDAASLKGLNNLAKLGLSFNSISA--VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN-IS 276 (330)
T ss_dssp ---CCEECTGGGTTCTTCCEEECCSSCCCE--ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC-CC
T ss_pred ---CCccCHHHhcCCCCCCEEECCCCcCce--eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc-CC
Confidence 112223445566777777777776655 43245667777777777777433 4443 6677777777777765 44
Q ss_pred Eec
Q 010462 398 RVG 400 (510)
Q Consensus 398 ~~~ 400 (510)
.++
T Consensus 277 ~~~ 279 (330)
T 1xku_A 277 AIG 279 (330)
T ss_dssp CCC
T ss_pred ccC
Confidence 443
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-24 Score=205.48 Aligned_cols=236 Identities=21% Similarity=0.220 Sum_probs=130.5
Q ss_pred eeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccc
Q 010462 84 ILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNI 162 (510)
Q Consensus 84 ~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i 162 (510)
++.+.+.++.+..+|..+ .++++.|++++|. +..+.+..|..+++|++|+++ +|.+..+ |..+
T Consensus 35 l~~l~~~~~~l~~ip~~~------~~~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~ 98 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI------SPDTTLLDLQNND---ISELRKDDFKGLQHLYALVLV-------NNKISKIHEKAF 98 (332)
T ss_dssp TTEEECCSSCCSSCCSCC------CTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SSCCCEECGGGS
T ss_pred CCEEECCCCCccccCCCC------CCCCeEEECCCCc---CCccCHhHhhCCCCCcEEECC-------CCccCccCHhHh
Confidence 455555555555444433 2566777777765 444345556667777777776 6666665 5566
Q ss_pred cccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCch-hhhccccCceeecCCCccc--ccccccccCccc
Q 010462 163 EKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSL--RYLPAGIGELIR 239 (510)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~--~~~p~~l~~l~~ 239 (510)
+++++|++|++++|. ++.+|..+. ++|++|++++|. +..+|. .+..+++|++|++++|... ...|..++.+ +
T Consensus 99 ~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 99 SPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp TTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred hCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 667777777777766 666665544 567777777766 444443 3566677777777666432 1333334444 4
Q ss_pred ccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCc
Q 010462 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE 319 (510)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 319 (510)
|+.|++..+.... ++ ..+ .++|+.|++++|..
T Consensus 174 L~~L~l~~n~l~~-------------------------l~-------~~~--~~~L~~L~l~~n~i-------------- 205 (332)
T 2ft3_A 174 LNYLRISEAKLTG-------------------------IP-------KDL--PETLNELHLDHNKI-------------- 205 (332)
T ss_dssp CSCCBCCSSBCSS-------------------------CC-------SSS--CSSCSCCBCCSSCC--------------
T ss_pred cCEEECcCCCCCc-------------------------cC-------ccc--cCCCCEEECCCCcC--------------
Confidence 4544443332221 00 000 13455555555541
Q ss_pred chhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 320 EDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 320 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
....+..+..+++|+.|++++|.... ++..++..+++|++|++++|... .+|. ++.+++|++|++++|.
T Consensus 206 ---~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 206 ---QAIELEDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp ---CCCCTTSSTTCTTCSCCBCCSSCCCC--CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC
T ss_pred ---CccCHHHhcCCCCCCEEECCCCcCCc--CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC
Confidence 11122345556666666666666555 43245566666666766666333 4444 5666666666666654
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=223.88 Aligned_cols=146 Identities=21% Similarity=0.143 Sum_probs=121.4
Q ss_pred EEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccC
Q 010462 88 MLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLL 166 (510)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~ 166 (510)
+..+.+...+|..++ +.++.|+|++|. +..+.+..|..+++|++|+|+ +|.+..+| ..|.+++
T Consensus 37 ~c~~~~l~~vP~~lp------~~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~Ls-------~N~i~~i~~~~f~~L~ 100 (635)
T 4g8a_A 37 QCMELNFYKIPDNLP------FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLS-------RCEIQTIEDGAYQSLS 100 (635)
T ss_dssp ECTTSCCSSCCSSSC------TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-------TCCCCEECTTTTTTCT
T ss_pred ECCCCCcCccCCCCC------cCCCEEEeeCCC---CCCCCHHHHhCCCCCCEEECC-------CCcCCCcChhHhcCCC
Confidence 333445566676654 589999999998 666667789999999999999 99999995 5689999
Q ss_pred ccceEeccCCCCccccch-hhhcccccceeccCCCCccccCch-hhhccccCceeecCCCcccc-cccccccCccccccc
Q 010462 167 HLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLR-YLPAGIGELIRLRSV 243 (510)
Q Consensus 167 ~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L 243 (510)
+|++|+|++|+ ++.+|. .|.++++|++|++++|. +..+|. .++++++|++|++++|.... ..|..++.+++|++|
T Consensus 101 ~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 101 HLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp TCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence 99999999999 888875 58999999999999998 667765 48999999999999996533 467788999999999
Q ss_pred CcEEEeCc
Q 010462 244 RKFVVGGG 251 (510)
Q Consensus 244 ~l~~~~~~ 251 (510)
++..+...
T Consensus 179 ~L~~N~l~ 186 (635)
T 4g8a_A 179 DLSSNKIQ 186 (635)
T ss_dssp ECCSSCCC
T ss_pred cccCcccc
Confidence 98876554
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=204.53 Aligned_cols=224 Identities=19% Similarity=0.140 Sum_probs=158.6
Q ss_pred CCccEEEeccCCcCcccc--chhHhhhcCCceeEEEeccccccccc-cccc-cccccccccCccceEeccCCCCccccch
Q 010462 109 RGLRSLLVESGEYSWSNE--ILPQLFDKLTCLRALKLEVREQGLYT-NFIK-KIPTNIEKLLHLKYLSLFGQKKIEKLPE 184 (510)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~ 184 (510)
.+++.|++++|. +.. .+|..|..+++|++|+++ + +.+. .+|..++++++|++|++++|.+.+.+|.
T Consensus 50 ~~l~~L~L~~~~---l~~~~~~~~~l~~l~~L~~L~L~-------~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLN---LPKPYPIPSSLANLPYLNFLYIG-------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECCC---CSSCEECCGGGGGCTTCSEEEEE-------EETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred ceEEEEECCCCC---ccCCcccChhHhCCCCCCeeeCC-------CCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH
Confidence 689999999998 433 367779999999999998 5 5544 6799999999999999999994448899
Q ss_pred hhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcc-cccccCcEEEeCccCCccCcccccc
Q 010462 185 TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELI-RLRSVRKFVVGGGYDRACSLGSLKK 263 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~ 263 (510)
.+.++++|++|++++|.....+|..+..+++|++|++++|.....+|..++.+. +|+.|++..+.... ...
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~---~~~----- 191 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG---KIP----- 191 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE---ECC-----
T ss_pred HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec---cCC-----
Confidence 999999999999999995558999999999999999999976668888888877 77777765443321 011
Q ss_pred cccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEee
Q 010462 264 LNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDE 343 (510)
Q Consensus 264 l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 343 (510)
..+..+. |+.|++++|. .....+..+..+++|+.|++++
T Consensus 192 -----------------------~~~~~l~-L~~L~Ls~N~-----------------l~~~~~~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 192 -----------------------PTFANLN-LAFVDLSRNM-----------------LEGDASVLFGSDKNTQKIHLAK 230 (313)
T ss_dssp -----------------------GGGGGCC-CSEEECCSSE-----------------EEECCGGGCCTTSCCSEEECCS
T ss_pred -----------------------hHHhCCc-ccEEECcCCc-----------------ccCcCCHHHhcCCCCCEEECCC
Confidence 1122222 5666666554 2223344555666666666666
Q ss_pred cCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 344 YRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 344 ~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
|.... .+ ..+..+++|++|++++|...+.+|. ++.+++|++|+|++|.
T Consensus 231 N~l~~--~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 231 NSLAF--DL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp SEECC--BG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred Cceee--ec-CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 66554 22 2344566666666666655444544 5666666666666655
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-24 Score=204.86 Aligned_cols=222 Identities=23% Similarity=0.294 Sum_probs=156.9
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
..++++.|++++|. +.. +|..+..+++|++|+++ +|.+..+|..++++++|++|++++|. +..+|..+
T Consensus 79 ~~~~l~~L~L~~n~---l~~-lp~~l~~l~~L~~L~L~-------~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l 146 (328)
T 4fcg_A 79 TQPGRVALELRSVP---LPQ-FPDQAFRLSHLQHMTID-------AAGLMELPDTMQQFAGLETLTLARNP-LRALPASI 146 (328)
T ss_dssp TSTTCCEEEEESSC---CSS-CCSCGGGGTTCSEEEEE-------SSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGG
T ss_pred cccceeEEEccCCC---chh-cChhhhhCCCCCEEECC-------CCCccchhHHHhccCCCCEEECCCCc-cccCcHHH
Confidence 45788899999887 444 55557778999999998 88888888888889999999999998 77888889
Q ss_pred hcccccceeccCCCCccccCchhhhc---------cccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccC
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGK---------LRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACS 257 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~---------l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~ 257 (510)
.++++|++|++++|..+..+|..+.. +++|++|++++|. +..+|..++.+++|+.|++..+.... .
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~----l 221 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSA----L 221 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCC----C
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCc----C
Confidence 99999999999988878888877654 7777777777773 34666666666666666665443321 1
Q ss_pred cccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCcc
Q 010462 258 LGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLK 337 (510)
Q Consensus 258 ~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 337 (510)
.. .+..+++|+.|++++|. ....++..+..+++|+
T Consensus 222 ~~----------------------------~l~~l~~L~~L~Ls~n~-----------------~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 222 GP----------------------------AIHHLPKLEELDLRGCT-----------------ALRNYPPIFGGRAPLK 256 (328)
T ss_dssp CG----------------------------GGGGCTTCCEEECTTCT-----------------TCCBCCCCTTCCCCCC
T ss_pred ch----------------------------hhccCCCCCEEECcCCc-----------------chhhhHHHhcCCCCCC
Confidence 11 23334455555555544 2233445566677777
Q ss_pred EEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccC
Q 010462 338 KLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEG 392 (510)
Q Consensus 338 ~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~ 392 (510)
.|++++|..... +| .++..+++|++|+|++|...+.+|. ++.+++|+.+.+..
T Consensus 257 ~L~L~~n~~~~~-~p-~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 257 RLILKDCSNLLT-LP-LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp EEECTTCTTCCB-CC-TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred EEECCCCCchhh-cc-hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 777777665543 56 5667777777777777777777766 77777777777664
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-24 Score=203.08 Aligned_cols=291 Identities=16% Similarity=0.176 Sum_probs=195.1
Q ss_pred CccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccccccCccceEeccCCCCcccc-chhhh
Q 010462 110 GLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKLLHLKYLSLFGQKKIEKL-PETLC 187 (510)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~l-p~~~~ 187 (510)
+++.++++++. +.. +|..+ .++|++|+++ ++.+..+ |..+.++++|++|++++|. +..+ |..+.
T Consensus 34 ~l~~l~~~~~~---l~~-ip~~~--~~~l~~L~l~-------~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 99 (332)
T 2ft3_A 34 HLRVVQCSDLG---LKA-VPKEI--SPDTTLLDLQ-------NNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFS 99 (332)
T ss_dssp ETTEEECCSSC---CSS-CCSCC--CTTCCEEECC-------SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGST
T ss_pred cCCEEECCCCC---ccc-cCCCC--CCCCeEEECC-------CCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhh
Confidence 68888888876 333 34323 3678888888 8888777 4578888888999988888 5555 67788
Q ss_pred cccccceeccCCCCccccCchhhhccccCceeecCCCccccccc-ccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 188 ELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLP-AGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 188 ~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
++++|++|++++|. +..+|..+. ++|++|++++|.. ..+| ..++.+++|+.|++..+..... +...
T Consensus 100 ~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~-------- 166 (332)
T 2ft3_A 100 PLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENS-GFEP-------- 166 (332)
T ss_dssp TCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGG-GSCT--------
T ss_pred CcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccC-CCCc--------
Confidence 88889999988887 677887665 7888888888854 3444 3477778888877765544310 0011
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRG 346 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (510)
..+..+ +|+.|++++|... .++..+ .++|++|++++|..
T Consensus 167 --------------------~~~~~l-~L~~L~l~~n~l~------------------~l~~~~--~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 167 --------------------GAFDGL-KLNYLRISEAKLT------------------GIPKDL--PETLNELHLDHNKI 205 (332)
T ss_dssp --------------------TSSCSC-CCSCCBCCSSBCS------------------SCCSSS--CSSCSCCBCCSSCC
T ss_pred --------------------ccccCC-ccCEEECcCCCCC------------------ccCccc--cCCCCEEECCCCcC
Confidence 122223 5666666666421 122222 26889999999888
Q ss_pred ccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCcccccccccccc
Q 010462 347 RRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLT 425 (510)
Q Consensus 347 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 425 (510)
.. ++...+..+++|+.|++++|......+. ++.+++|++|++++|. +..+|.. +..+++|+.|+
T Consensus 206 ~~--~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~------------l~~l~~L~~L~ 270 (332)
T 2ft3_A 206 QA--IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAG------------LPDLKLLQVVY 270 (332)
T ss_dssp CC--CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTT------------GGGCTTCCEEE
T ss_pred Cc--cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChh------------hhcCccCCEEE
Confidence 76 4435677889999999999865554443 7888999999999886 5555443 34788999999
Q ss_pred cccccccccccccccccccc-ccCcccceeeeccCccc--ccCCcccCCCCCCcEEEEcCCc
Q 010462 426 FWVMNALEELDFETAIKREI-IIMPRLSSLTIWSCRKL--KALPDHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 426 l~~~~~L~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~l~~c~ 484 (510)
+++++ ++.+......+..+ ..+++|+.|++.+|+.. ...|..+..+++|+.+++++|.
T Consensus 271 l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 271 LHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 88875 55543221111000 12578899999999765 3455567778999999998875
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=200.54 Aligned_cols=292 Identities=18% Similarity=0.177 Sum_probs=184.4
Q ss_pred CccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc-cccccCccceEeccCCCCcccc-chhhh
Q 010462 110 GLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT-NIEKLLHLKYLSLFGQKKIEKL-PETLC 187 (510)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l-p~~~~ 187 (510)
+++.++++++. ... +|..+ .+.|++|+++ ++.+..++. .+.++++|++|++++|. +..+ |..+.
T Consensus 32 ~l~~l~~~~~~---l~~-lp~~~--~~~l~~L~L~-------~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 97 (330)
T 1xku_A 32 HLRVVQCSDLG---LEK-VPKDL--PPDTALLDLQ-------NNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFA 97 (330)
T ss_dssp ETTEEECTTSC---CCS-CCCSC--CTTCCEEECC-------SSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTT
T ss_pred CCeEEEecCCC---ccc-cCccC--CCCCeEEECC-------CCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhc
Confidence 67777777765 333 33222 2577888887 777777754 67778888888888887 5554 66777
Q ss_pred cccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccC
Q 010462 188 ELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLL 267 (510)
Q Consensus 188 ~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L 267 (510)
++++|++|++++|. +..+|..+. ++|++|++++|......+..++.+++|+.|++..+....
T Consensus 98 ~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------- 159 (330)
T 1xku_A 98 PLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--------------- 159 (330)
T ss_dssp TCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG---------------
T ss_pred CCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc---------------
Confidence 88888888888877 667776554 678888887775433333446666666666655433221
Q ss_pred CCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCc
Q 010462 268 RDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGR 347 (510)
Q Consensus 268 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 347 (510)
.......+..+++|+.|++++|... .++..+ .++|++|++++|...
T Consensus 160 --------------~~~~~~~~~~l~~L~~L~l~~n~l~------------------~l~~~~--~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 160 --------------SGIENGAFQGMKKLSYIRIADTNIT------------------TIPQGL--PPSLTELHLDGNKIT 205 (330)
T ss_dssp --------------GGBCTTGGGGCTTCCEEECCSSCCC------------------SCCSSC--CTTCSEEECTTSCCC
T ss_pred --------------cCcChhhccCCCCcCEEECCCCccc------------------cCCccc--cccCCEEECCCCcCC
Confidence 0011234455677777777777522 112222 268888888888876
Q ss_pred cCCCchhHHhhhhcccceeccCccCCCcCC-CCCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccc
Q 010462 348 RNVVPISWFMSLTNLRFLFLFGWRNCEHLP-PLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTF 426 (510)
Q Consensus 348 ~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 426 (510)
. ++...+..+++|++|++++|......+ .++.+++|++|+|++|. +..++.. +..+++|++|++
T Consensus 206 ~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~------------l~~l~~L~~L~l 270 (330)
T 1xku_A 206 K--VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGG------------LADHKYIQVVYL 270 (330)
T ss_dssp E--ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTT------------TTTCSSCCEEEC
T ss_pred c--cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChh------------hccCCCcCEEEC
Confidence 6 432677788888888888886554444 37788888888888876 4444332 236788888888
Q ss_pred ccccccccccccccccc-ccccCcccceeeeccCcccc--cCCcccCCCCCCcEEEEcCC
Q 010462 427 WVMNALEELDFETAIKR-EIIIMPRLSSLTIWSCRKLK--ALPDHLLQKTTLQKLHIRRC 483 (510)
Q Consensus 427 ~~~~~L~~~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~c 483 (510)
++++ ++.+......+. .....++|+.|++.+|+... ..|..+..+++++.+++++|
T Consensus 271 ~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 271 HNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 8775 554432211100 01134778888888887532 23456666788888888876
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-25 Score=224.62 Aligned_cols=366 Identities=16% Similarity=0.064 Sum_probs=234.9
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccc-cchhHhhhcCCceeEEEeccccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSN-EILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-P 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p 159 (510)
+++++|++.++.+.... ....+..+++|++|++++|.+.... ..++..+..+++|++|+++ ++.+... +
T Consensus 3 ~~l~~L~Ls~~~l~~~~--~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls-------~n~l~~~~~ 73 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR-------SNELGDVGV 73 (461)
T ss_dssp EEEEEEEEESCCCCHHH--HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT-------TCCCHHHHH
T ss_pred ccceehhhhhcccCchh--HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCC-------CCcCChHHH
Confidence 67889999888776422 2212348899999999999842211 1256778889999999999 7776553 3
Q ss_pred cccc-ccC----ccceEeccCCCCcc-----ccchhhhcccccceeccCCCCccccCchhhh-----ccccCceeecCCC
Q 010462 160 TNIE-KLL----HLKYLSLFGQKKIE-----KLPETLCELYNLERLNVDHCKNLRELPRGIG-----KLRKLMYLHNEGT 224 (510)
Q Consensus 160 ~~i~-~l~----~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~-----~l~~L~~L~l~~~ 224 (510)
..+. .+. +|++|++++|. ++ .+|..+..+++|++|++++|......+..+. ..++|++|++++|
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 3333 244 69999999998 65 4678888999999999999983333233332 2567999999999
Q ss_pred cccc----cccccccCcccccccCcEEEeCccCCccCccccc-----ccccCCCceecCcccCCChhhhhHhhccCCCCC
Q 010462 225 DSLR----YLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLK-----KLNLLRDCRIRGLGDVSDAGEARRAELEKKKSL 295 (510)
Q Consensus 225 ~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~-----~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L 295 (510)
.... .++..+..+++|++|++..+.... ..+..+. ..++|+.|++.++.-...........+..+++|
T Consensus 153 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~---~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 229 (461)
T 1z7x_W 153 SLSAASCEPLASVLRAKPDFKELTVSNNDINE---AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229 (461)
T ss_dssp CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH---HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEECcCCCcch---HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCc
Confidence 5543 235556778899999988776542 1122222 244788888887644333333455667788999
Q ss_pred CeEEEEecCCCCCCcccccCCCCcchhhHhhhc-cCCCCCCccEEEEeecCCccCC---CchhHHhhhhcccceeccCcc
Q 010462 296 LKLGLHFGHSRDGDEERAGRRENEEDEDERLLE-ALGPPPNLKKLRIDEYRGRRNV---VPISWFMSLTNLRFLFLFGWR 371 (510)
Q Consensus 296 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~---~p~~~~~~l~~L~~L~L~~~~ 371 (510)
+.|++++|... ......+.. ....+++|++|++++|...... ++ ..+..+++|++|++++|.
T Consensus 230 ~~L~Ls~n~l~-------------~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 230 RELALGSNKLG-------------DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC-RVLRAKESLKELSLAGNE 295 (461)
T ss_dssp CEEECCSSBCH-------------HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH-HHHHHCTTCCEEECTTCC
T ss_pred cEEeccCCcCC-------------hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH-HHHhhCCCcceEECCCCC
Confidence 99999988611 111122222 2345789999999998765411 23 445578899999999885
Q ss_pred CCCc----CCC--CCCCCccceeeccCccccEEecccccCCCCCCCCCcccccccccccccccccccccccccccccccc
Q 010462 372 NCEH----LPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREI 445 (510)
Q Consensus 372 ~~~~----l~~--~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~ 445 (510)
.... +.. ....++|++|++++|. +...+..... ..+..+++|++|+++++. +...... .+...+
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~-------~~l~~~~~L~~L~Ls~n~-i~~~~~~-~l~~~l 365 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFS-------SVLAQNRFLLELQISNNR-LEDAGVR-ELCQGL 365 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH-------HHHHHCSSCCEEECCSSB-CHHHHHH-HHHHHH
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHH-------HHHhhCCCccEEEccCCc-cccccHH-HHHHHH
Confidence 4321 111 2234689999999886 3221100000 012356888888888774 4332111 011111
Q ss_pred c-cCcccceeeeccCcccc----cCCcccCCCCCCcEEEEcCCc
Q 010462 446 I-IMPRLSSLTIWSCRKLK----ALPDHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 446 ~-~l~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~l~~c~ 484 (510)
. ..++|++|++++|.... .+|..+..+++|++|++++|+
T Consensus 366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 1 26789999998885432 567777778889999998885
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=194.23 Aligned_cols=254 Identities=18% Similarity=0.191 Sum_probs=144.9
Q ss_pred ceeEEEeccccccccccccccccc-cccccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccCchh-hhcc
Q 010462 137 CLRALKLEVREQGLYTNFIKKIPT-NIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELPRG-IGKL 213 (510)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l 213 (510)
+|++|+++ ++.+..+|. .+.++++|++|++++|. ++.+ |..+.++++|++|++++|. +..+|.. +.++
T Consensus 53 ~L~~L~l~-------~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l 123 (353)
T 2z80_A 53 AVKSLDLS-------NNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPL 123 (353)
T ss_dssp TCCEEECT-------TSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTC
T ss_pred cCcEEECC-------CCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCC
Confidence 56666666 555555543 55566666666666665 4443 3446666666666666665 4445544 5566
Q ss_pred ccCceeecCCCcccccccc--cccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccC
Q 010462 214 RKLMYLHNEGTDSLRYLPA--GIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEK 291 (510)
Q Consensus 214 ~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~ 291 (510)
++|++|++++|. +..+|. .++.+++|+.|++..+.... . .....+..
T Consensus 124 ~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~--~----------------------------~~~~~~~~ 172 (353)
T 2z80_A 124 SSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT--K----------------------------IQRKDFAG 172 (353)
T ss_dssp TTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC--E----------------------------ECTTTTTT
T ss_pred ccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc--c----------------------------cCHHHccC
Confidence 666666666663 234443 45555555555554432110 0 00112334
Q ss_pred CCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCcc
Q 010462 292 KKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWR 371 (510)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~ 371 (510)
+++|+.|++++|. .....+..+..+++|++|++++|.... +|..++..+++|+.|++++|.
T Consensus 173 l~~L~~L~l~~n~-----------------l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 173 LTFLEELEIDASD-----------------LQSYEPKSLKSIQNVSHLILHMKQHIL--LLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp CCEEEEEEEEETT-----------------CCEECTTTTTTCSEEEEEEEECSCSTT--HHHHHHHHTTTEEEEEEESCB
T ss_pred CCCCCEEECCCCC-----------------cCccCHHHHhccccCCeecCCCCcccc--chhhhhhhcccccEEECCCCc
Confidence 4566666666664 222234556677888888888888765 663445568889999998885
Q ss_pred CCCcCCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcc
Q 010462 372 NCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPR 450 (510)
Q Consensus 372 ~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~ 450 (510)
.....+. +.. ....+.++.+++.++. +....+. .+|..+..+++
T Consensus 234 l~~~~~~~l~~---------------------------------~~~~~~l~~l~L~~~~-l~~~~l~-~l~~~l~~l~~ 278 (353)
T 2z80_A 234 LDTFHFSELST---------------------------------GETNSLIKKFTFRNVK-ITDESLF-QVMKLLNQISG 278 (353)
T ss_dssp CTTCCCC---------------------------------------CCCCCCEEEEESCB-CCHHHHH-HHHHHHHTCTT
T ss_pred ccccccccccc---------------------------------ccccchhhcccccccc-ccCcchh-hhHHHHhcccC
Confidence 4432211 110 0012233333333321 2221111 24555678899
Q ss_pred cceeeeccCcccccCCccc-CCCCCCcEEEEcCCcc
Q 010462 451 LSSLTIWSCRKLKALPDHL-LQKTTLQKLHIRRCPI 485 (510)
Q Consensus 451 L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~c~~ 485 (510)
|+.|++++| .++.+|..+ ..+++|+.|++++|+.
T Consensus 279 L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 279 LLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 999999998 456888764 7889999999998874
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-22 Score=198.84 Aligned_cols=302 Identities=22% Similarity=0.231 Sum_probs=166.4
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
+.++.|++.++.+..++. .+++|+.|++++|.+..+.. + .++|++|+++ +|.+..+| .
T Consensus 91 ~~L~~L~l~~n~l~~lp~-------~~~~L~~L~l~~n~l~~l~~-----~--~~~L~~L~L~-------~n~l~~lp-~ 148 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPE-------LPQSLKSLLVDNNNLKALSD-----L--PPLLEYLGVS-------NNQLEKLP-E 148 (454)
T ss_dssp TTCSEEECCSSCCSSCCC-------CCTTCCEEECCSSCCSCCCS-----C--CTTCCEEECC-------SSCCSSCC-C
T ss_pred CCCCEEEccCCcCCcccc-------ccCCCcEEECCCCccCcccC-----C--CCCCCEEECc-------CCCCCCCc-c
Confidence 667777777777665432 24677777777776332211 1 1577788887 77777777 4
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
++++++|++|++++|. ++.+|..+ .+|++|++++|. +..+| .++++++|++|++++|. +..+|... ++|+
T Consensus 149 ~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~---~~L~ 218 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNS-LKKLPDLP---LSLE 218 (454)
T ss_dssp CTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSC-CSSCCCCC---TTCC
T ss_pred cCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCc-CCcCCCCc---Cccc
Confidence 7777788888887777 66676533 477777887776 55666 47777778888877774 34455432 4667
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcch
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEED 321 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 321 (510)
.|++..+.... +..+..+++|+.+++.+..- .... ...++|+.|++++|....
T Consensus 219 ~L~l~~n~l~~-----lp~~~~l~~L~~L~l~~N~l-~~l~-------~~~~~L~~L~l~~N~l~~-------------- 271 (454)
T 1jl5_A 219 SIVAGNNILEE-----LPELQNLPFLTTIYADNNLL-KTLP-------DLPPSLEALNVRDNYLTD-------------- 271 (454)
T ss_dssp EEECCSSCCSS-----CCCCTTCTTCCEEECCSSCC-SSCC-------SCCTTCCEEECCSSCCSC--------------
T ss_pred EEECcCCcCCc-----ccccCCCCCCCEEECCCCcC-Cccc-------ccccccCEEECCCCcccc--------------
Confidence 77666554432 22356666677776665321 1110 013567777777665211
Q ss_pred hhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecc
Q 010462 322 EDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGN 401 (510)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~ 401 (510)
++. .+++|+.|++++|.... +| .. .++|+.|++++|... .++.+ .++|++|++++|. +..++.
T Consensus 272 ----l~~---~~~~L~~L~ls~N~l~~--l~-~~---~~~L~~L~l~~N~l~-~i~~~--~~~L~~L~Ls~N~-l~~lp~ 334 (454)
T 1jl5_A 272 ----LPE---LPQSLTFLDVSENIFSG--LS-EL---PPNLYYLNASSNEIR-SLCDL--PPSLEELNVSNNK-LIELPA 334 (454)
T ss_dssp ----CCC---CCTTCCEEECCSSCCSE--ES-CC---CTTCCEEECCSSCCS-EECCC--CTTCCEEECCSSC-CSCCCC
T ss_pred ----cCc---ccCcCCEEECcCCccCc--cc-Cc---CCcCCEEECcCCcCC-cccCC--cCcCCEEECCCCc-cccccc
Confidence 111 12566666766666554 33 11 246666666666332 22211 1366666666654 222221
Q ss_pred cccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccc--cCCcccCCC-------
Q 010462 402 EFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLK--ALPDHLLQK------- 472 (510)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l------- 472 (510)
.+++|+.|+++++. ++.+ |. .+++|+.|++++|...+ .+|..+..+
T Consensus 335 ---------------~~~~L~~L~L~~N~-l~~l------p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~ 389 (454)
T 1jl5_A 335 ---------------LPPRLERLIASFNH-LAEV------PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA 389 (454)
T ss_dssp ---------------CCTTCCEEECCSSC-CSCC------CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---
T ss_pred ---------------cCCcCCEEECCCCc-cccc------cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccc
Confidence 34667777766653 4332 22 35667777777765444 455555444
Q ss_pred ------CCCcEEEEcCCc
Q 010462 473 ------TTLQKLHIRRCP 484 (510)
Q Consensus 473 ------~~L~~L~l~~c~ 484 (510)
++|+.|++++|+
T Consensus 390 ~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 390 EVPELPQNLKQLHVETNP 407 (454)
T ss_dssp ------------------
T ss_pred ccccccCcCCEEECCCCc
Confidence 667777777664
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-23 Score=204.04 Aligned_cols=326 Identities=19% Similarity=0.149 Sum_probs=150.0
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCce-------------eEEEeccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCL-------------RALKLEVREQ 148 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~ 148 (510)
..++.+.+.++.+..+|..+. ++++|+.|++++|. +.+..|..+..+.+| ++|+++
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~----~L~~L~~L~l~~n~---~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~---- 79 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAE----NVKSKTEYYNAWSE---WERNAPPGNGEQREMAVSRLRDCLDRQAHELELN---- 79 (454)
T ss_dssp ---------------------------CCHHHHHHHHHH---HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECT----
T ss_pred ccchhhhcccCchhhCChhHh----cccchhhhhccCCc---ccccCCcccccchhcchhhhhhhhccCCCEEEec----
Confidence 567777787777765665555 78888888888776 333355556655553 666776
Q ss_pred cccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccc
Q 010462 149 GLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLR 228 (510)
Q Consensus 149 ~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 228 (510)
++.+..+|.. .++|++|++++|. ++.+|.. +++|++|++++|. +..+|.. .++|++|++++|.. .
T Consensus 80 ---~~~l~~lp~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l-~ 144 (454)
T 1jl5_A 80 ---NLGLSSLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQL-E 144 (454)
T ss_dssp ---TSCCSCCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCC-S
T ss_pred ---CCccccCCCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCC-C
Confidence 6666665542 2456666666665 4445542 2445555555544 3333321 13455555554422 2
Q ss_pred cccccccCcccccccCcEEEeCccCCc---------------cCcccccccccCCCceecCcccCCChhhhhHhhccCCC
Q 010462 229 YLPAGIGELIRLRSVRKFVVGGGYDRA---------------CSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKK 293 (510)
Q Consensus 229 ~~p~~l~~l~~L~~L~l~~~~~~~~~~---------------~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~ 293 (510)
.+| .++.+++|+.|++..+....... ..+..+..+++|+.+++.+..-. ... ....
T Consensus 145 ~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~-~l~-------~~~~ 215 (454)
T 1jl5_A 145 KLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK-KLP-------DLPL 215 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCC-------CCCT
T ss_pred CCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC-cCC-------CCcC
Confidence 344 24444455554444433221000 00112334444444444332110 000 0012
Q ss_pred CCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCC
Q 010462 294 SLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNC 373 (510)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~ 373 (510)
+|+.|++++|. . ..++ .+..+++|+.|++++|.... +| . .+++|+.|++++|..
T Consensus 216 ~L~~L~l~~n~-----------------l-~~lp-~~~~l~~L~~L~l~~N~l~~--l~-~---~~~~L~~L~l~~N~l- 269 (454)
T 1jl5_A 216 SLESIVAGNNI-----------------L-EELP-ELQNLPFLTTIYADNNLLKT--LP-D---LPPSLEALNVRDNYL- 269 (454)
T ss_dssp TCCEEECCSSC-----------------C-SSCC-CCTTCTTCCEEECCSSCCSS--CC-S---CCTTCCEEECCSSCC-
T ss_pred cccEEECcCCc-----------------C-Cccc-ccCCCCCCCEEECCCCcCCc--cc-c---cccccCEEECCCCcc-
Confidence 44444444443 1 1222 35566777777777776665 55 3 236677777777643
Q ss_pred CcCCCCCCCCccceeeccCccccEEecccccCC--C--CCCCCCccccc-cccccccccccccccccccccccccccccC
Q 010462 374 EHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGV--E--SDTDGSSVIAF-PKLKHLTFWVMNALEELDFETAIKREIIIM 448 (510)
Q Consensus 374 ~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~--~--~~~~~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l 448 (510)
..+|.. +++|++|++++|. ++.++.....- . ..-....+..+ ++|+.|+++++. ++. +|. .+
T Consensus 270 ~~l~~~--~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~-l~~------lp~---~~ 336 (454)
T 1jl5_A 270 TDLPEL--PQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIE------LPA---LP 336 (454)
T ss_dssp SCCCCC--CTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSC------CCC---CC
T ss_pred cccCcc--cCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc-ccc------ccc---cC
Confidence 334432 3567777777665 33332100000 0 00000001122 356666666543 332 222 46
Q ss_pred cccceeeeccCcccccCCcccCCCCCCcEEEEcCCcc
Q 010462 449 PRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 449 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 485 (510)
++|+.|++++| .++.+|. .+++|+.|++++|+.
T Consensus 337 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 337 PRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp TTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCC
T ss_pred CcCCEEECCCC-ccccccc---hhhhccEEECCCCCC
Confidence 88999999988 5667886 478999999998854
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-22 Score=190.91 Aligned_cols=241 Identities=20% Similarity=0.159 Sum_probs=144.1
Q ss_pred EEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc---ccccc
Q 010462 87 LMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI---PTNIE 163 (510)
Q Consensus 87 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l---p~~i~ 163 (510)
+...+..+..+|..+ .++|+.|++++|. +..+.+..|..+++|++|+++ ++.+..+ |..+.
T Consensus 12 l~c~~~~l~~ip~~~------~~~l~~L~L~~n~---l~~i~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~~~~ 75 (306)
T 2z66_A 12 IRCNSKGLTSVPTGI------PSSATRLELESNK---LQSLPHGVFDKLTQLTKLSLS-------SNGLSFKGCCSQSDF 75 (306)
T ss_dssp EECCSSCCSSCCSCC------CTTCCEEECCSSC---CCCCCTTTTTTCTTCSEEECC-------SSCCCEEEEEEHHHH
T ss_pred EEcCCCCcccCCCCC------CCCCCEEECCCCc---cCccCHhHhhccccCCEEECC-------CCccCcccCcccccc
Confidence 344444444444433 2567777777776 334344446677777777777 6665543 45555
Q ss_pred ccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCch--hhhccccCceeecCCCcccccccccccCccccc
Q 010462 164 KLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPR--GIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
.+++|++|++++|. +..+|..+..+++|++|++++|. +..+|. .+..+++|++|++++|......|..++.+++|+
T Consensus 76 ~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 76 GTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153 (306)
T ss_dssp SCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred cccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence 66777777777776 66666666677777777777766 444443 566677777777777654444445555555565
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcch
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEED 321 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 321 (510)
.|++..+.... . ..+..+..+++|+.|++++|.
T Consensus 154 ~L~l~~n~l~~--~----------------------------~~~~~~~~l~~L~~L~Ls~n~----------------- 186 (306)
T 2z66_A 154 VLKMAGNSFQE--N----------------------------FLPDIFTELRNLTFLDLSQCQ----------------- 186 (306)
T ss_dssp EEECTTCEEGG--G----------------------------EECSCCTTCTTCCEEECTTSC-----------------
T ss_pred EEECCCCcccc--c----------------------------cchhHHhhCcCCCEEECCCCC-----------------
Confidence 55544332211 0 011123334455555555554
Q ss_pred hhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCC-ccceeeccCcc
Q 010462 322 EDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLP-SLEYLEIEGMK 394 (510)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~-~L~~L~L~~~~ 394 (510)
.....+..+..+++|+.|++++|.... ++...+..+++|+.|++++|......+. +..++ +|++|+|++|+
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFS--LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSB--CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCc--cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 112223455667778888888877766 5434566778888888888866555554 66664 78888888776
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=188.50 Aligned_cols=267 Identities=17% Similarity=0.071 Sum_probs=199.0
Q ss_pred EEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccccccc
Q 010462 87 LMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKL 165 (510)
Q Consensus 87 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l 165 (510)
.+..++.+..+|..+. ++|++|++++|. +..+.+..|..+++|++|+++ +|.+..+ |..+.++
T Consensus 36 c~~~~~~l~~iP~~~~------~~L~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT------EAVKSLDLSNNR---ITYISNSDLQRCVNLQALVLT-------SNGINTIEEDSFSSL 99 (353)
T ss_dssp EECCSTTCSSCCTTCC------TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-------TSCCCEECTTTTTTC
T ss_pred eeCCCCCccccccccc------ccCcEEECCCCc---CcccCHHHhccCCCCCEEECC-------CCccCccCHhhcCCC
Confidence 4555666666666543 589999999998 555456578999999999999 8888887 5678999
Q ss_pred CccceEeccCCCCccccchh-hhcccccceeccCCCCccccCch--hhhccccCceeecCCCcccccc-cccccCccccc
Q 010462 166 LHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPR--GIGKLRKLMYLHNEGTDSLRYL-PAGIGELIRLR 241 (510)
Q Consensus 166 ~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~ 241 (510)
++|++|++++|. ++.+|.. +.++++|++|++++|. +..+|. .+.++++|++|++++|..+..+ |..++.+++|+
T Consensus 100 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 100 GSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp TTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred CCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 999999999999 7788775 8899999999999998 777876 6889999999999998545554 56788999999
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcch
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEED 321 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 321 (510)
.|++..+.... .....+..+++|+.+++.+... .. .....+..+++|+.|++++|........
T Consensus 178 ~L~l~~n~l~~---~~~~~l~~l~~L~~L~l~~n~l-~~---~~~~~~~~~~~L~~L~L~~n~l~~~~~~---------- 240 (353)
T 2z80_A 178 ELEIDASDLQS---YEPKSLKSIQNVSHLILHMKQH-IL---LLEIFVDVTSSVECLELRDTDLDTFHFS---------- 240 (353)
T ss_dssp EEEEEETTCCE---ECTTTTTTCSEEEEEEEECSCS-TT---HHHHHHHHTTTEEEEEEESCBCTTCCCC----------
T ss_pred EEECCCCCcCc---cCHHHHhccccCCeecCCCCcc-cc---chhhhhhhcccccEEECCCCcccccccc----------
Confidence 99998877653 3445667778888888876432 22 2223344578999999999874322210
Q ss_pred hhHhhhccCCCCCCccEEEEeecCCccC---CCchhHHhhhhcccceeccCccCCCcCCC--CCCCCccceeeccCcc
Q 010462 322 EDERLLEALGPPPNLKKLRIDEYRGRRN---VVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~ 394 (510)
..........++.+++.++..... .+| .++..+++|+.|++++|... .+|. ++.+++|++|+|++|+
T Consensus 241 ----~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~-~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 241 ----ELSTGETNSLIKKFTFRNVKITDESLFQVM-KLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ----------CCCCCCEEEEESCBCCHHHHHHHH-HHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ----ccccccccchhhccccccccccCcchhhhH-HHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 011223456788888887765431 145 67778999999999999554 6665 5889999999999986
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.7e-22 Score=183.58 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=105.6
Q ss_pred eEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccccc
Q 010462 85 LHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIE 163 (510)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~ 163 (510)
+.++..+..+..+|..+ .++|+.|++++|. +..+.+..|..+++|++|+++ ++.+..+ |..+.
T Consensus 14 ~~~~c~~~~l~~ip~~~------~~~l~~L~l~~n~---i~~~~~~~~~~~~~L~~L~l~-------~n~l~~~~~~~~~ 77 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI------PAASQRIFLHGNR---ISHVPAASFRACRNLTILWLH-------SNVLARIDAAAFT 77 (285)
T ss_dssp CEEECCSSCCSSCCTTC------CTTCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCCEECTTTTT
T ss_pred eEEEcCcCCcccCCcCC------CCCceEEEeeCCc---CCccCHHHcccCCCCCEEECC-------CCccceeCHhhcC
Confidence 45566666666555443 4688888888887 555455668888888888888 8887777 67788
Q ss_pred ccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccc
Q 010462 164 KLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRS 242 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 242 (510)
.+++|++|++++|..++.+ |..+..+++|++|++++|......|..+.++++|++|++++|......+..++.+++|+.
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence 8888888888888645655 667888888888888888844444666788888888888888543333334666666666
Q ss_pred cCcEEE
Q 010462 243 VRKFVV 248 (510)
Q Consensus 243 L~l~~~ 248 (510)
|++..+
T Consensus 158 L~l~~n 163 (285)
T 1ozn_A 158 LFLHGN 163 (285)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 665543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-23 Score=214.28 Aligned_cols=174 Identities=11% Similarity=0.015 Sum_probs=85.0
Q ss_pred ccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccc-----ccccccccCccceEeccCCCCcc-----
Q 010462 111 LRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKK-----IPTNIEKLLHLKYLSLFGQKKIE----- 180 (510)
Q Consensus 111 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~----- 180 (510)
|++|++.+|... ....++.....+++|++|+++ +|.+.. ++..+..+++|++|++++|. +.
T Consensus 140 L~~L~L~~~~~~-~~~~l~~~~~~~~~L~~L~L~-------~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~ 210 (592)
T 3ogk_B 140 LETLKLDKCSGF-TTDGLLSIVTHCRKIKTLLME-------ESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPK 210 (592)
T ss_dssp CCEEEEESCEEE-EHHHHHHHHHHCTTCSEEECT-------TCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHH
T ss_pred CcEEECcCCCCc-CHHHHHHHHhhCCCCCEEECc-------cccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHH
Confidence 566666555311 111133334456666666666 444321 22223345666666666665 32
Q ss_pred ccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccc---ccccccccCcccccccCcEEEeCccCCccC
Q 010462 181 KLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSL---RYLPAGIGELIRLRSVRKFVVGGGYDRACS 257 (510)
Q Consensus 181 ~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~---~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~ 257 (510)
.++..+.++++|++|++++|. +..+|..+..+++|++|+++.+... ...+..++.+++|+.|.+..... ...
T Consensus 211 ~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~----~~l 285 (592)
T 3ogk_B 211 DLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP----NEM 285 (592)
T ss_dssp HHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT----TTG
T ss_pred HHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch----hHH
Confidence 234444556666666666665 4456666666666666666542211 12223344444555444332111 122
Q ss_pred cccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEE
Q 010462 258 LGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLH 301 (510)
Q Consensus 258 ~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 301 (510)
...+..+++|+.|++.++. +. .......+..+++|+.|++.
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~-l~--~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYAL-LE--TEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp GGGGGGGGGCCEEEETTCC-CC--HHHHHHHHTTCTTCCEEEEE
T ss_pred HHHHhhcCCCcEEecCCCc-CC--HHHHHHHHHhCcCCCEEecc
Confidence 3334456667777766543 21 11222334556666666666
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.2e-21 Score=194.79 Aligned_cols=262 Identities=19% Similarity=0.160 Sum_probs=155.1
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..++.|++.++.+..+|..+. ++|+.|++++|. +.. +|. .+++|++|+++ +|.+..+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~------~~L~~L~L~~N~---l~~-lp~---~l~~L~~L~Ls-------~N~l~~lp~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP------AHITTLVIPDNN---LTS-LPA---LPPELRTLEVS-------GNQLTSLPV- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC------TTCSEEEECSCC---CSC-CCC---CCTTCCEEEEC-------SCCCSCCCC-
T ss_pred CCCcEEEecCCCcCccChhhC------CCCcEEEecCCC---CCC-CCC---cCCCCCEEEcC-------CCcCCcCCC-
Confidence 446777887777776665442 678888888886 333 333 46778888888 777777776
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
.+++|++|++++|. ++.+|. .+++|+.|++++|. +..+|.. +++|++|++++| .+..+|.. +.+|+
T Consensus 99 --~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~---~~~L~ 164 (622)
T 3g06_A 99 --LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPAL---PSELC 164 (622)
T ss_dssp --CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCC---CTTCC
T ss_pred --CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCc---cCCCC
Confidence 56778888888887 777776 56778888888877 6667764 377788888877 33444432 23444
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcch
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEED 321 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 321 (510)
.|++..+.... + + ..+++|+.|++++|....
T Consensus 165 ~L~L~~N~l~~----------------------l---~----------~~~~~L~~L~Ls~N~l~~-------------- 195 (622)
T 3g06_A 165 KLWAYNNQLTS----------------------L---P----------MLPSGLQELSVSDNQLAS-------------- 195 (622)
T ss_dssp EEECCSSCCSC----------------------C---C----------CCCTTCCEEECCSSCCSC--------------
T ss_pred EEECCCCCCCC----------------------C---c----------ccCCCCcEEECCCCCCCC--------------
Confidence 44433221110 0 0 123556666666664111
Q ss_pred hhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecc
Q 010462 322 EDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGN 401 (510)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~ 401 (510)
++ ..+++|+.|++++|.+.. +| . .+++|+.|++++|. +..+| ..+++|+.|+|++|. ++.++.
T Consensus 196 ----l~---~~~~~L~~L~L~~N~l~~--l~-~---~~~~L~~L~Ls~N~-L~~lp--~~l~~L~~L~Ls~N~-L~~lp~ 258 (622)
T 3g06_A 196 ----LP---TLPSELYKLWAYNNRLTS--LP-A---LPSGLKELIVSGNR-LTSLP--VLPSELKELMVSGNR-LTSLPM 258 (622)
T ss_dssp ----CC---CCCTTCCEEECCSSCCSS--CC-C---CCTTCCEEECCSSC-CSCCC--CCCTTCCEEECCSSC-CSCCCC
T ss_pred ----CC---CccchhhEEECcCCcccc--cC-C---CCCCCCEEEccCCc-cCcCC--CCCCcCcEEECCCCC-CCcCCc
Confidence 11 123567777777776665 55 2 24667777777663 33444 445667777776664 333322
Q ss_pred cccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCC
Q 010462 402 EFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALP 466 (510)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 466 (510)
.+++|+.|++++|. ++. +|..+..+++|+.|+|++|+..+..|
T Consensus 259 ---------------~~~~L~~L~Ls~N~-L~~------lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 259 ---------------LPSGLLSLSVYRNQ-LTR------LPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp ---------------CCTTCCEEECCSSC-CCS------CCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred ---------------ccccCcEEeCCCCC-CCc------CCHHHhhccccCEEEecCCCCCCcCH
Confidence 34566666666653 332 23444566666666666665443333
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-21 Score=191.77 Aligned_cols=241 Identities=20% Similarity=0.170 Sum_probs=174.5
Q ss_pred eeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccc
Q 010462 84 ILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNI 162 (510)
Q Consensus 84 ~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i 162 (510)
.+.+...+.....+|..+. ++++.|++++|. +..+.+..|..+++|++|+++ +|.+..+ |..|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~------~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~i~~~~~~~~ 119 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP------SNTRYLNLMENN---IQMIQADTFRHLHHLEVLQLG-------RNSIRQIEVGAF 119 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC------TTCSEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SSCCCEECTTTT
T ss_pred CcEEEECCCCcCccCCCCC------CCccEEECcCCc---CceECHHHcCCCCCCCEEECC-------CCccCCcChhhc
Confidence 3456666666666666543 689999999998 555567778999999999999 8888887 4778
Q ss_pred cccCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCch-hhhccccCceeecCCCcccccccc-cccCccc
Q 010462 163 EKLLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLRYLPA-GIGELIR 239 (510)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~ 239 (510)
.++++|++|+|++|. +..+|.. +..+++|++|++++|. +..+|. .+.++++|++|++++|..+..++. .+..+++
T Consensus 120 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 120 NGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp TTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred cCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 889999999999998 7777654 7889999999999998 555554 678899999999999777777665 4777788
Q ss_pred ccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCc
Q 010462 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE 319 (510)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 319 (510)
|+.|++..+.... +.. +..+++|+.|++++|.
T Consensus 198 L~~L~L~~n~l~~-----~~~----------------------------~~~l~~L~~L~Ls~N~--------------- 229 (452)
T 3zyi_A 198 LKYLNLGMCNIKD-----MPN----------------------------LTPLVGLEELEMSGNH--------------- 229 (452)
T ss_dssp CCEEECTTSCCSS-----CCC----------------------------CTTCTTCCEEECTTSC---------------
T ss_pred CCEEECCCCcccc-----ccc----------------------------ccccccccEEECcCCc---------------
Confidence 8888766544331 111 2344566666666665
Q ss_pred chhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 320 EDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 320 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
.....+..+..+++|+.|++++|.+.. ++...+..+++|+.|+|++|......+. +..+++|+.|+|++|+
T Consensus 230 --l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 230 --FPEIRPGSFHGLSSLKKLWVMNSQVSL--IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp --CSEECGGGGTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred --CcccCcccccCccCCCEEEeCCCcCce--ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 222334556677788888888877765 4325667788888888888854433333 6778888888888775
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-23 Score=210.36 Aligned_cols=368 Identities=14% Similarity=0.068 Sum_probs=238.0
Q ss_pred CceeEEEEEeecCCCc-cccccccccCCCCccEEEeccCCcCccccc-hhHhhhcCC----ceeEEEecccccccccccc
Q 010462 82 TKILHLMLTLHRGASV-PIPIWDNVKGLRGLRSLLVESGEYSWSNEI-LPQLFDKLT----CLRALKLEVREQGLYTNFI 155 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l~----~L~~L~l~~~~~~~~~~~~ 155 (510)
+.+++|.+.++.+... ...+...+..+++|++|++++|. +.+. ....+..++ +|++|+++ +|.+
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---l~~~~~~~l~~~l~~~~~~L~~L~L~-------~n~i 97 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE---LGDVGVHCVLQGLQTPSCKIQKLSLQ-------NCCL 97 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC---CHHHHHHHHHHTTCSTTCCCCEEECT-------TSCC
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc---CChHHHHHHHHHHhhCCCceeEEEcc-------CCCC
Confidence 6789999999887631 11233334588999999999997 3332 233344566 79999999 8876
Q ss_pred c-----cccccccccCccceEeccCCCCcccc-chhhhc-----ccccceeccCCCCccc----cCchhhhccccCceee
Q 010462 156 K-----KIPTNIEKLLHLKYLSLFGQKKIEKL-PETLCE-----LYNLERLNVDHCKNLR----ELPRGIGKLRKLMYLH 220 (510)
Q Consensus 156 ~-----~lp~~i~~l~~L~~L~l~~~~~~~~l-p~~~~~-----l~~L~~L~L~~~~~~~----~lp~~~~~l~~L~~L~ 220 (510)
. .+|..+..+++|++|++++|. ++.. +..+.. .++|++|++++|.... .++..+..+++|++|+
T Consensus 98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 98 TGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp BGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 6 468889999999999999998 5542 333332 5689999999998433 2466678889999999
Q ss_pred cCCCccccccccccc-----CcccccccCcEEEeCccCC-ccCcccccccccCCCceecCcccCCChhhhh-HhhccCCC
Q 010462 221 NEGTDSLRYLPAGIG-----ELIRLRSVRKFVVGGGYDR-ACSLGSLKKLNLLRDCRIRGLGDVSDAGEAR-RAELEKKK 293 (510)
Q Consensus 221 l~~~~~~~~~p~~l~-----~l~~L~~L~l~~~~~~~~~-~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~-~~~l~~~~ 293 (510)
+++|......+..+. ..++|+.|++..+...... ......+..+++|+.|++.+..-........ ......++
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~ 256 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCC
Confidence 999964333222232 2558999988877655310 0124456677889999888742111111111 22233588
Q ss_pred CCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhh-----hhcccceecc
Q 010462 294 SLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMS-----LTNLRFLFLF 368 (510)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~-----l~~L~~L~L~ 368 (510)
+|+.|++++|... ......++..+..+++|++|++++|.... .+...+.. .++|++|+++
T Consensus 257 ~L~~L~L~~n~l~-------------~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~--~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 257 RLRTLWIWECGIT-------------AKGCGDLCRVLRAKESLKELSLAGNELGD--EGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp CCCEEECTTSCCC-------------HHHHHHHHHHHHHCTTCCEEECTTCCCHH--HHHHHHHHHHTSTTCCCCEEECT
T ss_pred CceEEECcCCCCC-------------HHHHHHHHHHHhhCCCcceEECCCCCCch--HHHHHHHHHhccCCccceeeEcC
Confidence 9999999988621 12233456667778999999999998754 22123332 2699999999
Q ss_pred CccCCCc----CCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCcccccccccccccccccccccccccccccc
Q 010462 369 GWRNCEH----LPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKR 443 (510)
Q Consensus 369 ~~~~~~~----l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~ 443 (510)
+|..... ++. +..+++|++|+|++|. +...+.......- ....++|++|++++|. ++.... ..+|.
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l------~~~~~~L~~L~L~~n~-i~~~~~-~~l~~ 392 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGL------GQPGSVLRVLWLADCD-VSDSSC-SSLAA 392 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHH------TSTTCCCCEEECTTSC-CCHHHH-HHHHH
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHH------cCCCCceEEEECCCCC-CChhhH-HHHHH
Confidence 9965433 222 5678999999999986 4322111110000 0125799999999885 432111 14566
Q ss_pred ccccCcccceeeeccCccccc----CCccc-CCCCCCcEEEEcCCc
Q 010462 444 EIIIMPRLSSLTIWSCRKLKA----LPDHL-LQKTTLQKLHIRRCP 484 (510)
Q Consensus 444 ~~~~l~~L~~L~l~~c~~l~~----lp~~~-~~l~~L~~L~l~~c~ 484 (510)
.+..+++|++|++++|+.... +...+ ....+|+.|.+.++.
T Consensus 393 ~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 667899999999999965322 11111 123467777776654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.8e-23 Score=210.54 Aligned_cols=353 Identities=15% Similarity=0.054 Sum_probs=224.2
Q ss_pred eeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccc-cchhHhhhcCCceeEEEeccccccccccccc-----c
Q 010462 84 ILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSN-EILPQLFDKLTCLRALKLEVREQGLYTNFIK-----K 157 (510)
Q Consensus 84 ~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~ 157 (510)
+++|.+.++... ....+...+..+++|++|++++|.+.... .+++..+..+++|++|+++ ++.+. .
T Consensus 140 L~~L~L~~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~-------~n~~~~~~~~~ 211 (592)
T 3ogk_B 140 LETLKLDKCSGF-TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFY-------MTEFAKISPKD 211 (592)
T ss_dssp CCEEEEESCEEE-EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECT-------TCCCSSCCHHH
T ss_pred CcEEECcCCCCc-CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEee-------ccCCCccCHHH
Confidence 777777665411 01112112237899999999999732211 1155667889999999999 77664 4
Q ss_pred ccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCcc---ccCchhhhccccCceeecCCCcccccccccc
Q 010462 158 IPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNL---RELPRGIGKLRKLMYLHNEGTDSLRYLPAGI 234 (510)
Q Consensus 158 lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~---~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l 234 (510)
++..+.++++|++|++++|. +..+|..+..+++|+.|+++++... ...+..+..+++|+.|+++++ ....+|..+
T Consensus 212 l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~ 289 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILF 289 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGG
T ss_pred HHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHH
Confidence 45556779999999999998 7889998999999999999864422 234455778888999988876 446677777
Q ss_pred cCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEe----------cC
Q 010462 235 GELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHF----------GH 304 (510)
Q Consensus 235 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~----------~~ 304 (510)
..+++|+.|++..+.... ......+..+++|+.|++.. .+ ...........+++|++|++.. +.
T Consensus 290 ~~~~~L~~L~Ls~~~l~~--~~~~~~~~~~~~L~~L~L~~--~~--~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~ 363 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLET--EDHCTLIQKCPNLEVLETRN--VI--GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363 (592)
T ss_dssp GGGGGCCEEEETTCCCCH--HHHHHHHTTCTTCCEEEEEG--GG--HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred hhcCCCcEEecCCCcCCH--HHHHHHHHhCcCCCEEeccC--cc--CHHHHHHHHHhCCCCCEEEeecCccccccccccC
Confidence 888889998887766332 11223356677888887762 11 1233334445678899999984 22
Q ss_pred CCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHh-hhhcccceeccC---ccCCCcCCC--
Q 010462 305 SRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFM-SLTNLRFLFLFG---WRNCEHLPP-- 378 (510)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~-~l~~L~~L~L~~---~~~~~~l~~-- 378 (510)
. . ....+......+++|++|++..+..... .+ ..+. .+++|+.|++++ |..++..|.
T Consensus 364 ~------------~---~~~~~~~l~~~~~~L~~L~l~~~~l~~~-~~-~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 364 L------------V---SQRGLIALAQGCQELEYMAVYVSDITNE-SL-ESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp C------------C---CHHHHHHHHHHCTTCSEEEEEESCCCHH-HH-HHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred c------------c---CHHHHHHHHhhCccCeEEEeecCCccHH-HH-HHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 0 0 1112222233468888888866665442 22 2333 488899988874 334444321
Q ss_pred -----CCCCCccceeeccCccc-cEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccc
Q 010462 379 -----LGKLPSLEYLEIEGMKS-VKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLS 452 (510)
Q Consensus 379 -----~~~l~~L~~L~L~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~ 452 (510)
+..+++|++|+|+.|.+ +........ ...+++|+.|++++|. +... ..+..+..+++|+
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~----------~~~~~~L~~L~L~~n~-l~~~----~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI----------GQYSPNVRWMLLGYVG-ESDE----GLMEFSRGCPNLQ 491 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH----------HHSCTTCCEEEECSCC-SSHH----HHHHHHTCCTTCC
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHH----------HHhCccceEeeccCCC-CCHH----HHHHHHhcCcccC
Confidence 34578888888876553 111100000 1247788888888765 3321 2233345678888
Q ss_pred eeeeccCccccc-CCcccCCCCCCcEEEEcCCc
Q 010462 453 SLTIWSCRKLKA-LPDHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 453 ~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~ 484 (510)
+|+|++|+.... ++.....+++|+.|++++|+
T Consensus 492 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred eeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 888888873211 34444567888888888887
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=186.28 Aligned_cols=109 Identities=25% Similarity=0.295 Sum_probs=54.5
Q ss_pred HhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccccCCCCCCCCCcccccccccccccccccccccc
Q 010462 356 FMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEEL 435 (510)
Q Consensus 356 ~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 435 (510)
+..+++|++|++++| .+..+|.+..+++|++|+|++|. +..++... +..+++|+.|+++++. ++
T Consensus 192 ~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~n~-l~-- 255 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNH-FPEIRPGS-----------FHGLSSLKKLWVMNSQ-VS-- 255 (452)
T ss_dssp TTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSC-CSEECGGG-----------GTTCTTCCEEECTTSC-CC--
T ss_pred ccCCCCCCEEECCCC-cccccccccccccccEEECcCCc-CcccCccc-----------ccCccCCCEEEeCCCc-Cc--
Confidence 334445555555555 23334445555555555555554 32222111 2245555555555543 22
Q ss_pred ccccccccccccCcccceeeeccCcccccCCc-ccCCCCCCcEEEEcCCc
Q 010462 436 DFETAIKREIIIMPRLSSLTIWSCRKLKALPD-HLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 436 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~ 484 (510)
...+..+..+++|+.|+|++|. +..+|. .+..+++|+.|++++||
T Consensus 256 ---~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 256 ---LIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ---EECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ---eECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 2223344556666666766663 344443 34556667777776665
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=185.11 Aligned_cols=80 Identities=29% Similarity=0.338 Sum_probs=39.8
Q ss_pred CceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccc-hhhhcccccceeccCCCCccccCch-hhhc
Q 010462 136 TCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLRELPR-GIGK 212 (510)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~ 212 (510)
+++++|+|+ ++.+..++ ..|.++++|++|+|++|. +..++ ..+.++++|++|+|++|. +..+|. .+..
T Consensus 64 ~~l~~L~L~-------~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 134 (440)
T 3zyj_A 64 TNTRLLNLH-------ENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVY 134 (440)
T ss_dssp TTCSEEECC-------SCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCS
T ss_pred CCCcEEEcc-------CCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCc-CCeeCHhHhhc
Confidence 345555555 55554442 445555555555555555 33332 345555555555555554 333333 3445
Q ss_pred cccCceeecCCC
Q 010462 213 LRKLMYLHNEGT 224 (510)
Q Consensus 213 l~~L~~L~l~~~ 224 (510)
+++|++|++++|
T Consensus 135 l~~L~~L~L~~N 146 (440)
T 3zyj_A 135 LSKLKELWLRNN 146 (440)
T ss_dssp CSSCCEEECCSC
T ss_pred cccCceeeCCCC
Confidence 555555555554
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-21 Score=190.82 Aligned_cols=241 Identities=19% Similarity=0.183 Sum_probs=171.0
Q ss_pred eeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccc
Q 010462 84 ILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNI 162 (510)
Q Consensus 84 ~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i 162 (510)
.+.+...+..+..+|..+. ++++.|++++|. +..+.+..|..+++|++|+|+ +|.+..++ ..|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~------~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~i~~i~~~~~ 108 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS------TNTRLLNLHENQ---IQIIKVNSFKHLRHLEILQLS-------RNHIRTIEIGAF 108 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC------TTCSEEECCSCC---CCEECTTTTSSCSSCCEEECC-------SSCCCEECGGGG
T ss_pred CCEEEeCCCCcCcCCCCCC------CCCcEEEccCCc---CCeeCHHHhhCCCCCCEEECC-------CCcCCccChhhc
Confidence 3456666666776676553 688999999998 555566778999999999999 88888874 678
Q ss_pred cccCccceEeccCCCCccccch-hhhcccccceeccCCCCccccCch-hhhccccCceeecCCCcccccccc-cccCccc
Q 010462 163 EKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLRYLPA-GIGELIR 239 (510)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~ 239 (510)
.++++|++|++++|. ++.+|. .+..+++|++|++++|. +..+|. .+.++++|++|++++|..+..++. .+..+++
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 186 (440)
T 3zyj_A 109 NGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186 (440)
T ss_dssp TTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred cCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence 889999999999998 777765 58889999999999998 555554 678899999999998766666664 4777788
Q ss_pred ccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCc
Q 010462 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENE 319 (510)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 319 (510)
|+.|++..+.... +.. +..+++|+.|++++|.
T Consensus 187 L~~L~L~~n~l~~-----~~~----------------------------~~~l~~L~~L~Ls~N~--------------- 218 (440)
T 3zyj_A 187 LRYLNLAMCNLRE-----IPN----------------------------LTPLIKLDELDLSGNH--------------- 218 (440)
T ss_dssp CCEEECTTSCCSS-----CCC----------------------------CTTCSSCCEEECTTSC---------------
T ss_pred cCeecCCCCcCcc-----ccc----------------------------cCCCcccCEEECCCCc---------------
Confidence 8888766553331 111 2334556666666664
Q ss_pred chhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 320 EDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 320 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
.....+..+..+++|+.|++++|.+.. ++...+..+++|+.|+|++|......+. +..+++|+.|+|++|+
T Consensus 219 --l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 219 --LSAIRPGSFQGLMHLQKLWMIQSQIQV--IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp --CCEECTTTTTTCTTCCEEECTTCCCCE--ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred --cCccChhhhccCccCCEEECCCCceeE--EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 222234456667777777777777665 4325666777888888887744433333 6677888888887765
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-21 Score=185.94 Aligned_cols=215 Identities=15% Similarity=0.111 Sum_probs=121.7
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+++|+.|++++|. +..+.|..|..+++|++|+++ +|.+..++. +..+++|++|++++|. ++.+|.
T Consensus 32 ~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~-- 97 (317)
T 3o53_A 32 SAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLS-------SNVLYETLD-LESLSTLRTLDLNNNY-VQELLV-- 97 (317)
T ss_dssp TGGGCSEEECTTSC---CCCCCHHHHTTCTTCCEEECT-------TSCCEEEEE-ETTCTTCCEEECCSSE-EEEEEE--
T ss_pred cCCCCCEEECcCCc---cCcCCHHHhhCCCcCCEEECC-------CCcCCcchh-hhhcCCCCEEECcCCc-cccccC--
Confidence 55677777777776 444455667777777777777 666665544 6667777777777776 555552
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
.++|++|++++|. +..++. ..+++|++|++++|......|..++.+++|+.|++..+....
T Consensus 98 --~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------- 158 (317)
T 3o53_A 98 --GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-------------- 158 (317)
T ss_dssp --CTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE--------------
T ss_pred --CCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc--------------
Confidence 3677777777776 444443 235667777777764433334445555555555544332221
Q ss_pred CCCceecCcccCCChhhhhHhh-ccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAE-LEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYR 345 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 345 (510)
..... ...+++|+.|++++|... .+ .....+++|+.|++++|.
T Consensus 159 -----------------~~~~~~~~~l~~L~~L~L~~N~l~------------------~~-~~~~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 159 -----------------VNFAELAASSDTLEHLNLQYNFIY------------------DV-KGQVVFAKLKTLDLSSNK 202 (317)
T ss_dssp -----------------EEGGGGGGGTTTCCEEECTTSCCC------------------EE-ECCCCCTTCCEEECCSSC
T ss_pred -----------------ccHHHHhhccCcCCEEECCCCcCc------------------cc-ccccccccCCEEECCCCc
Confidence 00011 123455666666555411 00 122235667777777666
Q ss_pred CccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 346 GRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 346 ~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
... +| ..+..+++|+.|++++|... .+|. +..+++|+.|++++|+
T Consensus 203 l~~--l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 203 LAF--MG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CCE--EC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred CCc--ch-hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCC
Confidence 665 55 44556666666666666433 3333 5556666666666654
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-22 Score=188.81 Aligned_cols=287 Identities=14% Similarity=0.116 Sum_probs=173.0
Q ss_pred ccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccchhhhcc
Q 010462 111 LRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLPETLCEL 189 (510)
Q Consensus 111 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l 189 (510)
++..++..+. +.......+..+++|++|+++ ++.+..++ ..+.++++|++|++++|. +..++. +..+
T Consensus 12 l~i~~ls~~~---l~~~~~~~~~~~~~L~~L~L~-------~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l 79 (317)
T 3o53_A 12 YKIEKVTDSS---LKQALASLRQSAWNVKELDLS-------GNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESL 79 (317)
T ss_dssp EEEESCCTTT---HHHHHHHHHTTGGGCSEEECT-------TSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTC
T ss_pred eeEeeccccc---hhhhHHHHhccCCCCCEEECc-------CCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhc
Confidence 3444455554 444455666777889999998 88888774 678889999999999998 666655 8888
Q ss_pred cccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCC
Q 010462 190 YNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRD 269 (510)
Q Consensus 190 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 269 (510)
++|++|++++|. +..+| ..++|++|++++|.. ..++. ..+++|+.|++..+....
T Consensus 80 ~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l~~n~l-~~~~~--~~~~~L~~L~l~~N~l~~----------------- 134 (317)
T 3o53_A 80 STLRTLDLNNNY-VQELL----VGPSIETLHAANNNI-SRVSC--SRGQGKKNIYLANNKITM----------------- 134 (317)
T ss_dssp TTCCEEECCSSE-EEEEE----ECTTCCEEECCSSCC-SEEEE--CCCSSCEEEECCSSCCCS-----------------
T ss_pred CCCCEEECcCCc-ccccc----CCCCcCEEECCCCcc-CCcCc--cccCCCCEEECCCCCCCC-----------------
Confidence 999999999987 66555 348889999988844 33332 124555555554333221
Q ss_pred ceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccC-CCCCCccEEEEeecCCcc
Q 010462 270 CRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEAL-GPPPNLKKLRIDEYRGRR 348 (510)
Q Consensus 270 l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~ 348 (510)
.....+..+++|+.|++++|... ...+..+ ..+++|+.|++++|.+..
T Consensus 135 --------------~~~~~~~~l~~L~~L~Ls~N~l~-----------------~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 135 --------------LRDLDEGCRSRVQYLDLKLNEID-----------------TVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp --------------GGGBCTGGGSSEEEEECTTSCCC-----------------EEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred --------------ccchhhhccCCCCEEECCCCCCC-----------------cccHHHHhhccCcCCEEECCCCcCcc
Confidence 01112334466666776666511 1112222 245677777777777665
Q ss_pred CCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccc
Q 010462 349 NVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWV 428 (510)
Q Consensus 349 ~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 428 (510)
++ .. ..+++|++|++++|......+.+..+++|++|+|++|. ++.++..+ ..+++|+.|++++
T Consensus 184 --~~-~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~------------~~l~~L~~L~l~~ 246 (317)
T 3o53_A 184 --VK-GQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKAL------------RFSQNLEHFDLRG 246 (317)
T ss_dssp --EE-CC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTC------------CCCTTCCEEECTT
T ss_pred --cc-cc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHh------------hcCCCCCEEEccC
Confidence 44 22 24677777777777544333346677777777777775 55554432 2567777777776
Q ss_pred cccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcchH
Q 010462 429 MNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPILE 487 (510)
Q Consensus 429 ~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 487 (510)
++ +.. +..+..+..+++|+.|++.+|..++..+......+.+....-..|..+.
T Consensus 247 N~-~~~----~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 247 NG-FHC----GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp CC-CBH----HHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCT
T ss_pred CC-ccC----cCHHHHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCC
Confidence 65 220 2344555667777777777666665543332223333333333454443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-20 Score=177.31 Aligned_cols=231 Identities=19% Similarity=0.125 Sum_probs=168.5
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..+++|.+.++.+..++... +.++++|+.|++++|.+..... .+..+..+++|++|+++ ++.+..+|..
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~---~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~L~~L~Ls-------~n~i~~l~~~ 96 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGV---FDKLTQLTKLSLSSNGLSFKGC-CSQSDFGTTSLKYLDLS-------FNGVITMSSN 96 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTT---TTTCTTCSEEECCSSCCCEEEE-EEHHHHSCSCCCEEECC-------SCSEEEEEEE
T ss_pred CCCCEEECCCCccCccCHhH---hhccccCCEEECCCCccCcccC-cccccccccccCEEECC-------CCccccChhh
Confidence 78999999999888666542 2389999999999998433322 35557889999999999 9999999999
Q ss_pred ccccCccceEeccCCCCccccch--hhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccc-cccccccCcc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPE--TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLR-YLPAGIGELI 238 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~ 238 (510)
+..+++|++|++++|. +..++. .+..+++|++|++++|......|..+..+++|++|++++|.... .+|..++.++
T Consensus 97 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 9999999999999999 777764 68899999999999999556667778999999999999996544 5788899999
Q ss_pred cccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCC
Q 010462 239 RLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRREN 318 (510)
Q Consensus 239 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 318 (510)
+|+.|++..+.... .....+..+++|+.|++.+..-. ......+..+++|+.|++++|.
T Consensus 176 ~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~-------------- 234 (306)
T 2z66_A 176 NLTFLDLSQCQLEQ---LSPTAFNSLSSLQVLNMSHNNFF----SLDTFPYKCLNSLQVLDYSLNH-------------- 234 (306)
T ss_dssp TCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCS----BCCSGGGTTCTTCCEEECTTSC--------------
T ss_pred CCCEEECCCCCcCC---cCHHHhcCCCCCCEEECCCCccC----ccChhhccCcccCCEeECCCCC--------------
Confidence 99999887765542 22344555666666666553211 1111234556666666666665
Q ss_pred cchhhHhhhccCCCC-CCccEEEEeecCCcc
Q 010462 319 EEDEDERLLEALGPP-PNLKKLRIDEYRGRR 348 (510)
Q Consensus 319 ~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~ 348 (510)
.....+..+..+ ++|+.|++++|.+..
T Consensus 235 ---l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 235 ---IMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp ---CCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ---CcccCHHHHHhhhccCCEEEccCCCeec
Confidence 112223334444 366666666666543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-20 Score=187.78 Aligned_cols=257 Identities=21% Similarity=0.242 Sum_probs=171.8
Q ss_pred CCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhc
Q 010462 109 RGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCE 188 (510)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~ 188 (510)
.+++.|++++|. +.. +|..+. ++|++|+++ +|.+..+|. .+++|++|++++|. ++.+|. .
T Consensus 40 ~~l~~L~ls~n~---L~~-lp~~l~--~~L~~L~L~-------~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~ 99 (622)
T 3g06_A 40 NGNAVLNVGESG---LTT-LPDCLP--AHITTLVIP-------DNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---L 99 (622)
T ss_dssp HCCCEEECCSSC---CSC-CCSCCC--TTCSEEEEC-------SCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---C
T ss_pred CCCcEEEecCCC---cCc-cChhhC--CCCcEEEec-------CCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---C
Confidence 457888888887 333 343333 678888888 788877776 46788888888887 777776 6
Q ss_pred ccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCC
Q 010462 189 LYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLR 268 (510)
Q Consensus 189 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~ 268 (510)
+++|++|++++|. +..+|. .+++|+.|++++|. +..+|.. +++|+.|++..+.... ++
T Consensus 100 l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~--------l~------ 157 (622)
T 3g06_A 100 PPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLAS--------LP------ 157 (622)
T ss_dssp CTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSC--------CC------
T ss_pred CCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCC--------cC------
Confidence 7888888888887 667776 56778888888873 4556653 3566666555432221 00
Q ss_pred CceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCcc
Q 010462 269 DCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRR 348 (510)
Q Consensus 269 ~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 348 (510)
....+|+.|++++|... .++ ..+++|+.|++++|.+..
T Consensus 158 ---------------------~~~~~L~~L~L~~N~l~------------------~l~---~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 158 ---------------------ALPSELCKLWAYNNQLT------------------SLP---MLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp ---------------------CCCTTCCEEECCSSCCS------------------CCC---CCCTTCCEEECCSSCCSC
T ss_pred ---------------------CccCCCCEEECCCCCCC------------------CCc---ccCCCCcEEECCCCCCCC
Confidence 01245666766666411 111 345778888888888776
Q ss_pred CCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccc
Q 010462 349 NVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWV 428 (510)
Q Consensus 349 ~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 428 (510)
+| . .+++|+.|++++|. +..+|. .+++|+.|+|++|. ++.++ ..+++|+.|++++
T Consensus 196 --l~-~---~~~~L~~L~L~~N~-l~~l~~--~~~~L~~L~Ls~N~-L~~lp---------------~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 196 --LP-T---LPSELYKLWAYNNR-LTSLPA--LPSGLKELIVSGNR-LTSLP---------------VLPSELKELMVSG 250 (622)
T ss_dssp --CC-C---CCTTCCEEECCSSC-CSSCCC--CCTTCCEEECCSSC-CSCCC---------------CCCTTCCEEECCS
T ss_pred --CC-C---ccchhhEEECcCCc-ccccCC--CCCCCCEEEccCCc-cCcCC---------------CCCCcCcEEECCC
Confidence 66 3 34788888888874 444553 34778888888775 44333 1467888888887
Q ss_pred cccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcc
Q 010462 429 MNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 429 ~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 485 (510)
+. ++.+. . .+++|+.|++++| .+..+|..+..+++|+.|++++|+.
T Consensus 251 N~-L~~lp------~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 251 NR-LTSLP------M---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp SC-CSCCC------C---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CC-CCcCC------c---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 63 54432 2 4678888888888 4567887788888888888888864
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.4e-21 Score=179.96 Aligned_cols=201 Identities=18% Similarity=0.102 Sum_probs=119.4
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccc--cccccc-------ccCccceEeccCCC
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKK--IPTNIE-------KLLHLKYLSLFGQK 177 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--lp~~i~-------~l~~L~~L~l~~~~ 177 (510)
..++|+.|++.+|.+ . +|..+... |++|+++ ++.+.. +|..+. ++.+|++|++++|.
T Consensus 41 ~~~~L~~l~l~~n~l----~-~p~~~~~~--L~~L~L~-------~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 106 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE----A-DLGQFTDI--IKSLSLK-------RLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106 (312)
T ss_dssp EEEECTTHHHHCCTT----C-CCHHHHHH--HHHCCCC-------EEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB
T ss_pred cCCCceeEeeccccc----c-cHHHHHHH--Hhhcccc-------cccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc
Confidence 455666667777762 2 34333333 6777777 666533 454444 56777777777777
Q ss_pred Cccccchhh--hcccccceeccCCCCccccCchhhhcc-----ccCceeecCCCcccccccccccCcccccccCcEEEeC
Q 010462 178 KIEKLPETL--CELYNLERLNVDHCKNLRELPRGIGKL-----RKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGG 250 (510)
Q Consensus 178 ~~~~lp~~~--~~l~~L~~L~L~~~~~~~~lp~~~~~l-----~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~ 250 (510)
+.+.+|..+ ..+++|++|++++|. +...|..++.+ ++|++|++++|......|..++.+++|++|++.++..
T Consensus 107 l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 107 VTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp CBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred ccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence 333566655 667777777777776 44456666665 6777777777744333334444444444444332211
Q ss_pred ccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccC
Q 010462 251 GYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEAL 330 (510)
Q Consensus 251 ~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (510)
. .....+..+
T Consensus 186 ~----------------------------------------------------------------------~~~~~~~~~ 195 (312)
T 1wwl_A 186 L----------------------------------------------------------------------GERGLISAL 195 (312)
T ss_dssp C----------------------------------------------------------------------HHHHHHHHS
T ss_pred C----------------------------------------------------------------------cchHHHHHH
Confidence 1 001112222
Q ss_pred --CCCCCccEEEEeecCCccCCCc---hhHHhhhhcccceeccCccCCCcCC--CCCCCCccceeeccCcc
Q 010462 331 --GPPPNLKKLRIDEYRGRRNVVP---ISWFMSLTNLRFLFLFGWRNCEHLP--PLGKLPSLEYLEIEGMK 394 (510)
Q Consensus 331 --~~~~~L~~L~l~~~~~~~~~~p---~~~~~~l~~L~~L~L~~~~~~~~l~--~~~~l~~L~~L~L~~~~ 394 (510)
..+++|++|++++|.+.. ++ ...+..+++|++|++++|......| .+..+++|++|+|++|.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMET--PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCC--HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred HhccCCCCCEEECCCCcCcc--hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 566788888888887763 32 1233467899999999986655443 35667888888888775
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-21 Score=201.43 Aligned_cols=366 Identities=14% Similarity=0.071 Sum_probs=164.1
Q ss_pred CceeEEEEEeecCCCccccccccc-cCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccc---
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNV-KGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKK--- 157 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--- 157 (510)
+.+++|.+.++.+... ....+ ..+++|++|++.+|.... ...++..+..+++|++|+++ +|.+..
T Consensus 105 ~~L~~L~L~~~~~~~~---~~~~l~~~~~~L~~L~L~~~~~~~-~~~l~~~~~~~~~L~~L~L~-------~~~i~~~~~ 173 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDD---CLELIAKSFKNFKVLVLSSCEGFS-TDGLAAIAATCRNLKELDLR-------ESDVDDVSG 173 (594)
T ss_dssp TTCCEEEEESCBCCHH---HHHHHHHHCTTCCEEEEESCEEEE-HHHHHHHHHHCTTCCEEECT-------TCEEECCCG
T ss_pred CCCCeEEeeCcEEcHH---HHHHHHHhCCCCcEEeCCCcCCCC-HHHHHHHHHhCCCCCEEeCc-------CCccCCcch
Confidence 4566666666554321 11111 146677777777663111 11144444567777777776 554332
Q ss_pred --ccccccccCccceEeccCCC-Cc--cccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcc------
Q 010462 158 --IPTNIEKLLHLKYLSLFGQK-KI--EKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDS------ 226 (510)
Q Consensus 158 --lp~~i~~l~~L~~L~l~~~~-~~--~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~------ 226 (510)
++.....+++|++|++++|. .+ ..++..+..+++|++|++++|..+..+|..+.++++|++|+++.+..
T Consensus 174 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhh
Confidence 22222345667777776664 01 11222234457777777777654555666666677777776554421
Q ss_pred cccccccccCcccccccC-cEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCC
Q 010462 227 LRYLPAGIGELIRLRSVR-KFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHS 305 (510)
Q Consensus 227 ~~~~p~~l~~l~~L~~L~-l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 305 (510)
+..++..+.++++|+.|. +..... ......+..+++|+.|++.++. +. .......+..+++|+.|++.++.
T Consensus 254 ~~~l~~~l~~~~~L~~Ls~~~~~~~----~~l~~~~~~~~~L~~L~L~~~~-l~--~~~l~~~~~~~~~L~~L~l~~~~- 325 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLSGFWDAVP----AYLPAVYSVCSRLTTLNLSYAT-VQ--SYDLVKLLCQCPKLQRLWVLDYI- 325 (594)
T ss_dssp HHHHHHHHHTCTTCCEEECCBTCCG----GGGGGGHHHHTTCCEEECTTCC-CC--HHHHHHHHTTCTTCCEEEEEGGG-
T ss_pred HHHHHHHHhcCCCcccccCCcccch----hhHHHHHHhhCCCCEEEccCCC-CC--HHHHHHHHhcCCCcCEEeCcCcc-
Confidence 111222233334444331 110000 0111112234555555555443 21 11122223444555555555442
Q ss_pred CCCCcc----------cccC--------CCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceec
Q 010462 306 RDGDEE----------RAGR--------RENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFL 367 (510)
Q Consensus 306 ~~~~~~----------~~~~--------~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L 367 (510)
...... .... .................+++|+.|.+..+......+. .....+++|+.|++
T Consensus 326 ~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~-~l~~~~~~L~~L~L 404 (594)
T 2p1m_B 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI-TIARNRPNMTRFRL 404 (594)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHH-HHHHHCTTCCEEEE
T ss_pred CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHH-HHHhhCCCcceeEe
Confidence 000000 0000 0000000000111111245555554444443321011 11124566666666
Q ss_pred c-----CccCCCcCCC-------CCCCCccceeeccCccccEEecccccCCCCCCCCCcccccccccccccccccccccc
Q 010462 368 F-----GWRNCEHLPP-------LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEEL 435 (510)
Q Consensus 368 ~-----~~~~~~~l~~-------~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 435 (510)
+ +|...+..|. +..+++|+.|+|++ .+...+.... ...+++|+.|++++|. +..
T Consensus 405 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l----------~~~~~~L~~L~L~~~~-i~~- 470 (594)
T 2p1m_B 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYI----------GTYAKKMEMLSVAFAG-DSD- 470 (594)
T ss_dssp EESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHH----------HHHCTTCCEEEEESCC-SSH-
T ss_pred ecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHH----------HHhchhccEeeccCCC-CcH-
Confidence 6 2333332221 23455666666644 1111100000 0125677777777664 222
Q ss_pred cccccccccc-ccCcccceeeeccCcccccC-CcccCCCCCCcEEEEcCCcc
Q 010462 436 DFETAIKREI-IIMPRLSSLTIWSCRKLKAL-PDHLLQKTTLQKLHIRRCPI 485 (510)
Q Consensus 436 ~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~c~~ 485 (510)
..+..+ ..+++|+.|+|++|+..... ...+..+++|+.|++++|+.
T Consensus 471 ----~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 471 ----LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp ----HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred ----HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 112112 46899999999999763222 22345578999999999976
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-21 Score=181.30 Aligned_cols=244 Identities=18% Similarity=0.137 Sum_probs=168.4
Q ss_pred eeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhh-------cCCceeEEEeccccccccccccc
Q 010462 84 ILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFD-------KLTCLRALKLEVREQGLYTNFIK 156 (510)
Q Consensus 84 ~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~ 156 (510)
++.+.+.++.+ ..|..+. .. |+.|++++|.+... .+|..+. .+++|++|+++ ++.+.
T Consensus 45 L~~l~l~~n~l-~~p~~~~----~~--L~~L~L~~n~l~~~--~~~~~~~~~~~~~~~l~~L~~L~L~-------~n~l~ 108 (312)
T 1wwl_A 45 LEYLLKRVDTE-ADLGQFT----DI--IKSLSLKRLTVRAA--RIPSRILFGALRVLGISGLQELTLE-------NLEVT 108 (312)
T ss_dssp CTTHHHHCCTT-CCCHHHH----HH--HHHCCCCEEEEEEE--ECBHHHHHHHHHHHTTSCCCEEEEE-------EEBCB
T ss_pred ceeEeeccccc-ccHHHHH----HH--HhhcccccccccCC--CcCHHHHHHHHHhcCcCCccEEEcc-------CCccc
Confidence 34444444444 3455444 33 88888888873221 2444343 79999999999 88887
Q ss_pred -cccccc--cccCccceEeccCCCCccccchhhhcc-----cccceeccCCCCccccCchhhhccccCceeecCCCcccc
Q 010462 157 -KIPTNI--EKLLHLKYLSLFGQKKIEKLPETLCEL-----YNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLR 228 (510)
Q Consensus 157 -~lp~~i--~~l~~L~~L~l~~~~~~~~lp~~~~~l-----~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 228 (510)
.+|..+ ..+++|++|++++|. +..+|..+..+ ++|++|++++|......|..++++++|++|++++|....
T Consensus 109 ~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 109 GTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp SCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred chhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 578876 889999999999999 77778888888 999999999999444444789999999999999996543
Q ss_pred c--ccccc--cCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecC
Q 010462 229 Y--LPAGI--GELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGH 304 (510)
Q Consensus 229 ~--~p~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 304 (510)
. +|..+ +.+++|+.|++..+... .........+..+++|+.|++++|.
T Consensus 188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~----------------------------~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 188 ERGLISALCPLKFPTLQVLALRNAGME----------------------------TPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp HHHHHHHSCTTSCTTCCEEECTTSCCC----------------------------CHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred chHHHHHHHhccCCCCCEEECCCCcCc----------------------------chHHHHHHHHhcCCCCCEEECCCCc
Confidence 3 23333 66666666665433221 1111222334466788888888876
Q ss_pred CCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCc
Q 010462 305 SRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPS 384 (510)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~ 384 (510)
..... ....+..+++|+.|++++|.+.. +| .++. ++|++|++++|.. ..+|.+..+++
T Consensus 240 l~~~~----------------~~~~~~~l~~L~~L~Ls~N~l~~--ip-~~~~--~~L~~L~Ls~N~l-~~~p~~~~l~~ 297 (312)
T 1wwl_A 240 LRDAA----------------GAPSCDWPSQLNSLNLSFTGLKQ--VP-KGLP--AKLSVLDLSYNRL-DRNPSPDELPQ 297 (312)
T ss_dssp CCSSC----------------CCSCCCCCTTCCEEECTTSCCSS--CC-SSCC--SEEEEEECCSSCC-CSCCCTTTSCE
T ss_pred CCccc----------------chhhhhhcCCCCEEECCCCccCh--hh-hhcc--CCceEEECCCCCC-CCChhHhhCCC
Confidence 22111 01234456788999999888876 77 5444 7888999988854 44466888888
Q ss_pred cceeeccCcc
Q 010462 385 LEYLEIEGMK 394 (510)
Q Consensus 385 L~~L~L~~~~ 394 (510)
|++|+|++|+
T Consensus 298 L~~L~L~~N~ 307 (312)
T 1wwl_A 298 VGNLSLKGNP 307 (312)
T ss_dssp EEEEECTTCT
T ss_pred CCEEeccCCC
Confidence 8888888876
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-20 Score=186.29 Aligned_cols=234 Identities=14% Similarity=0.115 Sum_probs=118.6
Q ss_pred ceeEEEeccccccccccccccc-cccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhcccc
Q 010462 137 CLRALKLEVREQGLYTNFIKKI-PTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRK 215 (510)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~ 215 (510)
+|++|+++ +|.+..+ |..|+.+++|++|+|++|. +...+. +..+++|++|++++|. +..+|. .++
T Consensus 35 ~L~~L~Ls-------~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~ 100 (487)
T 3oja_A 35 NVKELDLS-------GNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLV----GPS 100 (487)
T ss_dssp GCCEEECC-------SSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTT
T ss_pred CccEEEee-------CCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCC
Confidence 66666666 6666555 3556666666666666666 444443 6666666666666665 444443 256
Q ss_pred CceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCC
Q 010462 216 LMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSL 295 (510)
Q Consensus 216 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L 295 (510)
|++|++++|......+. .+++|+.|++..+.... ..+..+..+++|
T Consensus 101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~-------------------------------~~~~~~~~l~~L 146 (487)
T 3oja_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITM-------------------------------LRDLDEGCRSRV 146 (487)
T ss_dssp CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCS-------------------------------GGGBCGGGGSSE
T ss_pred cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCC-------------------------------CCchhhcCCCCC
Confidence 66666666633222111 22334444333222111 001112233444
Q ss_pred CeEEEEecCCCCCCcccccCCCCcchhhHhhhccCC-CCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCC
Q 010462 296 LKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALG-PPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCE 374 (510)
Q Consensus 296 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~ 374 (510)
+.|++++|.. ....+..+. .+++|+.|++++|.+.. +| . ...+++|+.|++++|....
T Consensus 147 ~~L~Ls~N~l-----------------~~~~~~~l~~~l~~L~~L~Ls~N~l~~--~~-~-~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 147 QYLDLKLNEI-----------------DTVNFAELAASSDTLEHLNLQYNFIYD--VK-G-QVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp EEEECTTSCC-----------------CEEEGGGGGGGTTTCCEEECTTSCCCE--EE-C-CCCCTTCCEEECCSSCCCE
T ss_pred CEEECCCCCC-----------------CCcChHHHhhhCCcccEEecCCCcccc--cc-c-cccCCCCCEEECCCCCCCC
Confidence 4555544431 111222222 45666667766666554 44 2 1246666666666664443
Q ss_pred cCCCCCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCccccee
Q 010462 375 HLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSL 454 (510)
Q Consensus 375 ~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L 454 (510)
..|.++.+++|+.|+|++|. +..+|.. +..+++|+.|++++++ +.. +..|..+..++.|+.|
T Consensus 206 ~~~~~~~l~~L~~L~Ls~N~-l~~lp~~------------l~~l~~L~~L~l~~N~-l~c----~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 206 MGPEFQSAAGVTWISLRNNK-LVLIEKA------------LRFSQNLEHFDLRGNG-FHC----GTLRDFFSKNQRVQTV 267 (487)
T ss_dssp ECGGGGGGTTCSEEECTTSC-CCEECTT------------CCCCTTCCEEECTTCC-BCH----HHHHHHHTTCHHHHHH
T ss_pred CCHhHcCCCCccEEEecCCc-Ccccchh------------hccCCCCCEEEcCCCC-CcC----cchHHHHHhCCCCcEE
Confidence 33346666666666666665 4444432 1245666666666554 110 2234444556666666
Q ss_pred eec
Q 010462 455 TIW 457 (510)
Q Consensus 455 ~l~ 457 (510)
++.
T Consensus 268 ~~~ 270 (487)
T 3oja_A 268 AKQ 270 (487)
T ss_dssp HHH
T ss_pred ecc
Confidence 665
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-19 Score=165.79 Aligned_cols=152 Identities=23% Similarity=0.276 Sum_probs=123.4
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccc-cccc-c
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNF-IKKI-P 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l-p 159 (510)
..+++|.+.++.+...+.. .+..+++|++|++++|. +..+.+..|..+++|++|+++ ++. +..+ |
T Consensus 32 ~~l~~L~l~~n~i~~~~~~---~~~~~~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~~l~~~~~ 98 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAA---SFRACRNLTILWLHSNV---LARIDAAAFTGLALLEQLDLS-------DNAQLRSVDP 98 (285)
T ss_dssp TTCSEEECTTSCCCEECTT---TTTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SCTTCCCCCT
T ss_pred CCceEEEeeCCcCCccCHH---HcccCCCCCEEECCCCc---cceeCHhhcCCccCCCEEeCC-------CCCCccccCH
Confidence 7899999999988765432 23389999999999998 556567789999999999999 886 8888 7
Q ss_pred ccccccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccCch-hhhccccCceeecCCCcccccccc-cccC
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLRYLPA-GIGE 236 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~ 236 (510)
..+..+++|++|++++|. +..+ |..+.++++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|. .+..
T Consensus 99 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~ 175 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRG 175 (285)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CEECTTTTTT
T ss_pred HHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcc-cccCHHHhcC
Confidence 789999999999999999 5555 6778999999999999999 666664 488999999999999954 44443 4677
Q ss_pred cccccccCcEEEe
Q 010462 237 LIRLRSVRKFVVG 249 (510)
Q Consensus 237 l~~L~~L~l~~~~ 249 (510)
+++|+.|++..+.
T Consensus 176 l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 176 LHSLDRLLLHQNR 188 (285)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccccCEEECCCCc
Confidence 7777777665443
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-19 Score=179.31 Aligned_cols=239 Identities=13% Similarity=0.094 Sum_probs=174.9
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+++|+.|++++|. +..+.|..|..+++|++|+|+ +|.+..++. ++.+++|++|++++|. ++.+|.
T Consensus 32 ~~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~-- 97 (487)
T 3oja_A 32 SAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLS-------SNVLYETLD-LESLSTLRTLDLNNNY-VQELLV-- 97 (487)
T ss_dssp TGGGCCEEECCSSC---CCCCCGGGGTTCTTCCEEECT-------TSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE--
T ss_pred cCCCccEEEeeCCc---CCCCCHHHHhCCCCCCEEEee-------CCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC--
Confidence 55689999999998 555567789999999999999 888877655 8889999999999998 777764
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
.++|++|++++|. +..+|. ..+++|+.|++++|......|..++.+++|+.|++..+.... ..+..+
T Consensus 98 --~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~l----- 164 (487)
T 3oja_A 98 --GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT---VNFAEL----- 164 (487)
T ss_dssp --CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE---EEGGGG-----
T ss_pred --CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC---cChHHH-----
Confidence 3899999999998 555554 356889999999997666667778888888888776554432 011111
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRG 346 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (510)
...+++|+.|++++|.+. .. .....+++|+.|++++|.+
T Consensus 165 ----------------------~~~l~~L~~L~Ls~N~l~------------------~~-~~~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 165 ----------------------AASSDTLEHLNLQYNFIY------------------DV-KGQVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp ----------------------GGGTTTCCEEECTTSCCC------------------EE-ECCCCCTTCCEEECCSSCC
T ss_pred ----------------------hhhCCcccEEecCCCccc------------------cc-cccccCCCCCEEECCCCCC
Confidence 113466777777766511 01 2234578999999999998
Q ss_pred ccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcccc-EEecccccCCCCCCCCCccccccccccc
Q 010462 347 RRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSV-KRVGNEFLGVESDTDGSSVIAFPKLKHL 424 (510)
Q Consensus 347 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~L 424 (510)
.. +| ..+..+++|+.|++++|... .+|. ++.+++|+.|++++|+.. ..++.. +..++.|+.+
T Consensus 204 ~~--~~-~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~------------~~~l~~L~~l 267 (487)
T 3oja_A 204 AF--MG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF------------FSKNQRVQTV 267 (487)
T ss_dssp CE--EC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHH------------HTTCHHHHHH
T ss_pred CC--CC-HhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHH------------HHhCCCCcEE
Confidence 87 77 56788999999999999655 4554 888999999999998722 112111 2356777777
Q ss_pred ccccc
Q 010462 425 TFWVM 429 (510)
Q Consensus 425 ~l~~~ 429 (510)
.+..+
T Consensus 268 ~~~~~ 272 (487)
T 3oja_A 268 AKQTV 272 (487)
T ss_dssp HHHHH
T ss_pred ecccc
Confidence 77543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-21 Score=197.63 Aligned_cols=254 Identities=16% Similarity=0.086 Sum_probs=157.0
Q ss_pred CceeEEEEEeecCCC----cccc--------ccccccCCCCccEEEeccCCcCccccchhHhhh-cCCceeEEEeccccc
Q 010462 82 TKILHLMLTLHRGAS----VPIP--------IWDNVKGLRGLRSLLVESGEYSWSNEILPQLFD-KLTCLRALKLEVREQ 148 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~----~~~~--------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~ 148 (510)
+.++.+.+.++.... .+.. +......+++|+.|++++|. +.+..+..+. .+++|++|+++
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~---~~~~~~~~l~~~~~~L~~L~L~---- 138 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV---VTDDCLELIAKSFKNFKVLVLS---- 138 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB---CCHHHHHHHHHHCTTCCEEEEE----
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE---EcHHHHHHHHHhCCCCcEEeCC----
Confidence 568888888764211 1110 01112378899999999987 3332344453 78999999999
Q ss_pred ccccc-cccc--ccccccccCccceEeccCCCCccc-----cchhhhcccccceeccCCCC-cc--ccCchhhhccccCc
Q 010462 149 GLYTN-FIKK--IPTNIEKLLHLKYLSLFGQKKIEK-----LPETLCELYNLERLNVDHCK-NL--RELPRGIGKLRKLM 217 (510)
Q Consensus 149 ~~~~~-~~~~--lp~~i~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~L~~~~-~~--~~lp~~~~~l~~L~ 217 (510)
++ .+.. ++..+.++++|++|++++|. +.. ++.....+++|+.|++++|. .+ ..++..+..+++|+
T Consensus 139 ---~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~ 214 (594)
T 2p1m_B 139 ---SCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214 (594)
T ss_dssp ---SCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCC
T ss_pred ---CcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCc
Confidence 66 4444 45555579999999999998 444 22223367799999999886 11 12233345679999
Q ss_pred eeecCCCcccccccccccCcccccccCcEEEeCcc---CCccCcccccccccCCCc-eecCcccCCChhhhhHhhccCCC
Q 010462 218 YLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGY---DRACSLGSLKKLNLLRDC-RIRGLGDVSDAGEARRAELEKKK 293 (510)
Q Consensus 218 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~---~~~~~~~~l~~l~~L~~l-~i~~~~~~~~~~~~~~~~l~~~~ 293 (510)
+|++++|.....+|..+..+++|+.|.+..+...- ........+.++++|+.+ .+.. .. .......+..++
T Consensus 215 ~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~---~~--~~~l~~~~~~~~ 289 (594)
T 2p1m_B 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD---AV--PAYLPAVYSVCS 289 (594)
T ss_dssp EEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBT---CC--GGGGGGGHHHHT
T ss_pred EEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcc---cc--hhhHHHHHHhhC
Confidence 99999986666677778888899988765432100 001122244555666655 2222 11 123333444678
Q ss_pred CCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccC
Q 010462 294 SLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFG 369 (510)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~ 369 (510)
+|++|++++|.. ........+..+++|++|++.+| .....++ .....+++|++|++.+
T Consensus 290 ~L~~L~L~~~~l----------------~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~-~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 290 RLTTLNLSYATV----------------QSYDLVKLLCQCPKLQRLWVLDY-IEDAGLE-VLASTCKDLRELRVFP 347 (594)
T ss_dssp TCCEEECTTCCC----------------CHHHHHHHHTTCTTCCEEEEEGG-GHHHHHH-HHHHHCTTCCEEEEEC
T ss_pred CCCEEEccCCCC----------------CHHHHHHHHhcCCCcCEEeCcCc-cCHHHHH-HHHHhCCCCCEEEEec
Confidence 999999998861 11223334566788888888887 2221122 3344678888888844
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-18 Score=161.17 Aligned_cols=194 Identities=18% Similarity=0.274 Sum_probs=119.7
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
++++|+.|++.+|. +.. ++. +..+++|++|+++ +|.+..++. +..+++|++|++++|. ++.+| .+
T Consensus 39 ~l~~L~~L~l~~~~---i~~-l~~-~~~l~~L~~L~L~-------~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~ 103 (308)
T 1h6u_A 39 DLDGITTLSAFGTG---VTT-IEG-VQYLNNLIGLELK-------DNQITDLAP-LKNLTKITELELSGNP-LKNVS-AI 103 (308)
T ss_dssp HHHTCCEEECTTSC---CCC-CTT-GGGCTTCCEEECC-------SSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GG
T ss_pred HcCCcCEEEeeCCC---ccC-chh-hhccCCCCEEEcc-------CCcCCCChh-HccCCCCCEEEccCCc-CCCch-hh
Confidence 56677777777776 333 332 6667777777777 677766655 6677777777777777 66665 36
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
..+++|++|++++|. +..+|. +..+++|++|++++|.. ..++. ++.+++|+
T Consensus 104 ~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~------------------------- 154 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQ------------------------- 154 (308)
T ss_dssp TTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCC-------------------------
T ss_pred cCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCcc-------------------------
Confidence 677777777777776 555554 66777777777776632 22222 33333333
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRG 346 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (510)
.|++++|... .++ .+..+++|+.|++++|..
T Consensus 155 ------------------------------~L~l~~n~l~------------------~~~-~l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 155 ------------------------------YLSIGNAQVS------------------DLT-PLANLSKLTTLKADDNKI 185 (308)
T ss_dssp ------------------------------EEECCSSCCC------------------CCG-GGTTCTTCCEEECCSSCC
T ss_pred ------------------------------EEEccCCcCC------------------CCh-hhcCCCCCCEEECCCCcc
Confidence 3333333200 001 144566777777777776
Q ss_pred ccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccccEEe
Q 010462 347 RRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRV 399 (510)
Q Consensus 347 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~ 399 (510)
.. ++ . +..+++|++|++++|.. ..++.+..+++|+.|++++|+ +...
T Consensus 186 ~~--~~-~-l~~l~~L~~L~L~~N~l-~~~~~l~~l~~L~~L~l~~N~-i~~~ 232 (308)
T 1h6u_A 186 SD--IS-P-LASLPNLIEVHLKNNQI-SDVSPLANTSNLFIVTLTNQT-ITNQ 232 (308)
T ss_dssp CC--CG-G-GGGCTTCCEEECTTSCC-CBCGGGTTCTTCCEEEEEEEE-EECC
T ss_pred Cc--Ch-h-hcCCCCCCEEEccCCcc-CccccccCCCCCCEEEccCCe-eecC
Confidence 65 55 3 56777888888888743 344457778888888888776 4433
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-18 Score=159.43 Aligned_cols=130 Identities=22% Similarity=0.196 Sum_probs=92.2
Q ss_pred CCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccc-hhh
Q 010462 109 RGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLP-ETL 186 (510)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp-~~~ 186 (510)
++|++|++++|. +..+.+..|..+++|++|+++ ++.+..++ ..+.++++|++|++++|. ++.++ ..+
T Consensus 28 ~~l~~L~ls~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLS-------RCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF 96 (276)
T ss_dssp TTCCEEECTTCC---CCEECTTTTTTCTTCSEEECT-------TCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred CCccEEECCCCc---ccccCHhHhccccCCcEEECC-------CCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhh
Confidence 468888888887 444445567788888888888 77777774 467778888888888887 55544 567
Q ss_pred hcccccceeccCCCCccccCch-hhhccccCceeecCCCcccc-cccccccCcccccccCcEEEeC
Q 010462 187 CELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLR-YLPAGIGELIRLRSVRKFVVGG 250 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~~ 250 (510)
.++++|++|++++|. +..++. .++.+++|++|++++|.... .+|..++.+++|+.|++..+..
T Consensus 97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 788888888888887 444443 57778888888888875433 2566677777777776665543
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-19 Score=172.01 Aligned_cols=255 Identities=15% Similarity=0.166 Sum_probs=152.1
Q ss_pred CCccEEEeccCCcCccccchhHhhhcC--CceeEEEeccccccccccccccccccccccCccceEeccCCCCccc--cch
Q 010462 109 RGLRSLLVESGEYSWSNEILPQLFDKL--TCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEK--LPE 184 (510)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~--lp~ 184 (510)
..++.++++++. + .+..+..+ +++++|+++ ++.+...+..+..+++|++|++++|. +.. +|.
T Consensus 47 ~~~~~l~l~~~~---~---~~~~~~~~~~~~l~~L~l~-------~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~ 112 (336)
T 2ast_B 47 SLWQTLDLTGKN---L---HPDVTGRLLSQGVIAFRCP-------RSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHG 112 (336)
T ss_dssp TTSSEEECTTCB---C---CHHHHHHHHHTTCSEEECT-------TCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHH
T ss_pred hhheeecccccc---C---CHHHHHhhhhccceEEEcC-------CccccccchhhccCCCCCEEEccCCC-cCHHHHHH
Confidence 346778888775 2 24446666 788999998 88877776667788999999999988 543 777
Q ss_pred hhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccc--cccccccCcccccccCcEEEeCccCCccCccccc
Q 010462 185 TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLR--YLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLK 262 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 262 (510)
.+..+++|++|++++|......|..++++++|++|++++|..+. .++..+..+++|++|+
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~------------------ 174 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN------------------ 174 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE------------------
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc------------------
Confidence 78889999999999988555677778888899999988883222 1333233333333333
Q ss_pred ccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEec-CCCCCCcccccCCCCcchhhHhhhccCCCCC-CccEEE
Q 010462 263 KLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFG-HSRDGDEERAGRRENEEDEDERLLEALGPPP-NLKKLR 340 (510)
Q Consensus 263 ~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~ 340 (510)
+++| .. ....++..+..++ +|++|+
T Consensus 175 -------------------------------------l~~~~~l----------------~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 175 -------------------------------------LSWCFDF----------------TEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp -------------------------------------CCCCTTC----------------CHHHHHHHHHHSCTTCCEEE
T ss_pred -------------------------------------CCCCCCc----------------ChHHHHHHHHhcccCCCEEE
Confidence 3332 10 0011222233345 666666
Q ss_pred EeecC--CccCCCchhHHhhhhcccceeccCccCCC--cCCCCCCCCccceeeccCccccEEecccccCCCCCCCCCccc
Q 010462 341 IDEYR--GRRNVVPISWFMSLTNLRFLFLFGWRNCE--HLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVI 416 (510)
Q Consensus 341 l~~~~--~~~~~~p~~~~~~l~~L~~L~L~~~~~~~--~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 416 (510)
+++|. .....+| ..+..+++|++|++++|...+ .++.++.+++|++|++++|..+.. ..+ . .+.
T Consensus 202 l~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~-~--------~l~ 269 (336)
T 2ast_B 202 LSGYRKNLQKSDLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP--ETL-L--------ELG 269 (336)
T ss_dssp CCSCGGGSCHHHHH-HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG--GGG-G--------GGG
T ss_pred eCCCcccCCHHHHH-HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH--HHH-H--------HHh
Confidence 66663 2211144 455667777777777775332 233466677777777777752211 100 0 133
Q ss_pred cccccccccccccccccccccccccccccccC-cccceeeeccCcccccCCcccC
Q 010462 417 AFPKLKHLTFWVMNALEELDFETAIKREIIIM-PRLSSLTIWSCRKLKALPDHLL 470 (510)
Q Consensus 417 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~ 470 (510)
.+++|+.|++++| +..-.+ ..+ .+|+.|++++|...+..|..+.
T Consensus 270 ~~~~L~~L~l~~~--i~~~~~--------~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 270 EIPTLKTLQVFGI--VPDGTL--------QLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GCTTCCEEECTTS--SCTTCH--------HHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred cCCCCCEEeccCc--cCHHHH--------HHHHhhCcceEEecccCccccCCccc
Confidence 5777777777776 222111 122 3466667777755455555443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.73 E-value=9.8e-18 Score=155.97 Aligned_cols=197 Identities=19% Similarity=0.133 Sum_probs=108.3
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccccccCccceEeccCCCCccccchh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKLLHLKYLSLFGQKKIEKLPET 185 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~ 185 (510)
++++++.+++.++. +.. +|..+ .+.+++|+++ +|.+..+ |..+..+++|++|++++|. ++.+|..
T Consensus 8 ~l~~l~~l~~~~~~---l~~-ip~~~--~~~l~~L~L~-------~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 73 (290)
T 1p9a_G 8 KVASHLEVNCDKRN---LTA-LPPDL--PKDTTILHLS-------ENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD 73 (290)
T ss_dssp CSTTCCEEECTTSC---CSS-CCSCC--CTTCCEEECT-------TSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC
T ss_pred ccCCccEEECCCCC---CCc-CCCCC--CCCCCEEEcC-------CCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC
Confidence 55666666666665 333 22212 1456666666 6666555 3456666666666666666 5555553
Q ss_pred hhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccc
Q 010462 186 LCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLN 265 (510)
Q Consensus 186 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 265 (510)
..+++|++|++++|. +..+|..+..+++|++|++++|......|..++.+++|+.|++..+....
T Consensus 74 -~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~------------- 138 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT------------- 138 (290)
T ss_dssp -SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-------------
T ss_pred -CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-------------
Confidence 566666666666666 55666666666666666666663322222334444444444332211110
Q ss_pred cCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecC
Q 010462 266 LLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYR 345 (510)
Q Consensus 266 ~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 345 (510)
..+..+..+++|+.|++++|.
T Consensus 139 -----------------------------------------------------------~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 139 -----------------------------------------------------------LPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp -----------------------------------------------------------CCTTTTTTCTTCCEEECTTSC
T ss_pred -----------------------------------------------------------cChhhcccccCCCEEECCCCc
Confidence 001123345566666666666
Q ss_pred CccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 346 GRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 346 ~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
+.. +|...+..+++|+.|++++|... .+|. +..+++|+.|+|++|+
T Consensus 160 l~~--l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LTE--LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSC--CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred CCc--cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 655 55344556777777777777433 4443 5666677777777765
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=151.49 Aligned_cols=61 Identities=23% Similarity=0.241 Sum_probs=35.0
Q ss_pred CCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 332 PPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 332 ~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
.+++|+.|++++|.+.. ++...+..+++|+.|++++|......+. ++.+++|+.|++++|+
T Consensus 155 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQS--LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCccCCEEECCCCCcCc--cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 34555566666555554 4424445666677777766644433333 5666677777776654
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=151.88 Aligned_cols=196 Identities=24% Similarity=0.285 Sum_probs=114.5
Q ss_pred CccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccchh-hh
Q 010462 110 GLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLPET-LC 187 (510)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~-~~ 187 (510)
..++++++++. +.. +|..+. +++++|+++ ++.+..+| ..+.++++|++|++++|. +..+|.. +.
T Consensus 17 ~~~~l~~~~~~---l~~-ip~~~~--~~l~~L~l~-------~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~ 82 (270)
T 2o6q_A 17 NKNSVDCSSKK---LTA-IPSNIP--ADTKKLDLQ-------SNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFK 82 (270)
T ss_dssp TTTEEECTTSC---CSS-CCSCCC--TTCSEEECC-------SSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTS
T ss_pred CCCEEEccCCC---CCc-cCCCCC--CCCCEEECc-------CCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhc
Confidence 45667777766 333 232222 467777777 66666664 356677777777777776 5666554 35
Q ss_pred cccccceeccCCCCccccCch-hhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 188 ELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 188 ~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
++++|++|++++|. +..+|. .+..+++|++|++++|......+..++.+++|+.|
T Consensus 83 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L----------------------- 138 (270)
T 2o6q_A 83 ELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL----------------------- 138 (270)
T ss_dssp SCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE-----------------------
T ss_pred CCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE-----------------------
Confidence 67777777777776 444443 34667777777777663322222223333333333
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRG 346 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (510)
++++|... ......+..+++|+.|++++|.+
T Consensus 139 --------------------------------~Ls~n~l~-----------------~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 139 --------------------------------SLGYNELQ-----------------SLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp --------------------------------ECCSSCCC-----------------CCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------------------ECCCCcCC-----------------ccCHhHccCCcccceeEecCCcC
Confidence 33333210 00112244566777777777776
Q ss_pred ccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 347 RRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 347 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
.. ++...+..+++|++|++++|......+. +..+++|+.|+|++|+
T Consensus 170 ~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 170 KR--VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cE--eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 65 5534566778888888888744432222 6777888888888765
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=156.09 Aligned_cols=229 Identities=17% Similarity=0.067 Sum_probs=149.5
Q ss_pred CCCCccEEEeccCCcCcccc-chhHhhhcCCceeEEEecccccccccccccc-ccccc--cccCccceEeccCCCCcccc
Q 010462 107 GLRGLRSLLVESGEYSWSNE-ILPQLFDKLTCLRALKLEVREQGLYTNFIKK-IPTNI--EKLLHLKYLSLFGQKKIEKL 182 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-lp~~i--~~l~~L~~L~l~~~~~~~~l 182 (510)
....++.+.+.++......- .+.. +..+++|++|+++ +|.+.. .|..+ ..+++|++|++++|.+....
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~-------~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLE-------DLKITGTMPPLPLEATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEE-------SCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEee-------CCEeccchhhhhhhccCCCCCEEEeecccccchh
Confidence 44567888888876321100 0112 3345679999999 888664 47776 88999999999999833333
Q ss_pred c----hhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccccc--cc--ccccCcccccccCcEEEeCccCC
Q 010462 183 P----ETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRY--LP--AGIGELIRLRSVRKFVVGGGYDR 254 (510)
Q Consensus 183 p----~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~--~p--~~l~~l~~L~~L~l~~~~~~~~~ 254 (510)
| ..+..+++|++|++++|......|..++.+++|++|++++|..... ++ ..++.+++|++|++..+...
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--- 210 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--- 210 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC---
T ss_pred hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC---
Confidence 3 3345789999999999995444556788999999999999954321 22 22356666666665544322
Q ss_pred ccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCC--
Q 010462 255 ACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGP-- 332 (510)
Q Consensus 255 ~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 332 (510)
.........+..+++|+.|++++|... ...+..+..
T Consensus 211 -------------------------~l~~~~~~l~~~l~~L~~L~Ls~N~l~-----------------~~~p~~~~~~~ 248 (310)
T 4glp_A 211 -------------------------TPTGVCAALAAAGVQPHSLDLSHNSLR-----------------ATVNPSAPRCM 248 (310)
T ss_dssp -------------------------CHHHHHHHHHHHTCCCSSEECTTSCCC-----------------CCCCSCCSSCC
T ss_pred -------------------------chHHHHHHHHhcCCCCCEEECCCCCCC-----------------ccchhhHHhcc
Confidence 111111122355677788888777622 112223333
Q ss_pred -CCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCcc
Q 010462 333 -PPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMK 394 (510)
Q Consensus 333 -~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~ 394 (510)
+++|++|++++|.+.. +| ..+ +++|+.|++++|. +..+|.+..+++|+.|+|++|+
T Consensus 249 ~~~~L~~L~Ls~N~l~~--lp-~~~--~~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQ--VP-KGL--PAKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCTTCCCEECCSSCCCS--CC-SCC--CSCCSCEECCSCC-CCSCCCTTSCCCCSCEECSSTT
T ss_pred CcCcCCEEECCCCCCCc--hh-hhh--cCCCCEEECCCCc-CCCCchhhhCCCccEEECcCCC
Confidence 3688888888888876 77 443 3788888888884 4455667778888888888876
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=152.30 Aligned_cols=147 Identities=19% Similarity=0.168 Sum_probs=122.4
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..++.+.+.++.+..+|..+. ++++.|++++|. +..+.+..|..+++|++|+++ ++.+..++..
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~------~~l~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~ 73 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP------KDTTILHLSENL---LYTFSLATLMPYTRLTQLNLD-------RAELTKLQVD 73 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC------TTCCEEECTTSC---CSEEEGGGGTTCTTCCEEECT-------TSCCCEEECC
T ss_pred CCccEEECCCCCCCcCCCCCC------CCCCEEEcCCCc---CCccCHHHhhcCCCCCEEECC-------CCccCcccCC
Confidence 668888888888887776553 789999999998 555567789999999999999 9999888764
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCc-hhhhccccCceeecCCCccccccc-ccccCccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGTDSLRYLP-AGIGELIR 239 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~ 239 (510)
+.+++|++|++++|. ++.+|..+..+++|++|++++|. +..+| ..+..+++|++|++++|.. ..+| ..+..+++
T Consensus 74 -~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPK 149 (290)
T ss_dssp -SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTT
T ss_pred -CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCC-CccChhhcccccC
Confidence 789999999999999 88999999999999999999999 66666 5689999999999999955 4444 44567777
Q ss_pred ccccCcEEE
Q 010462 240 LRSVRKFVV 248 (510)
Q Consensus 240 L~~L~l~~~ 248 (510)
|+.|++..+
T Consensus 150 L~~L~L~~N 158 (290)
T 1p9a_G 150 LEKLSLANN 158 (290)
T ss_dssp CCEEECTTS
T ss_pred CCEEECCCC
Confidence 777766543
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-17 Score=149.30 Aligned_cols=103 Identities=14% Similarity=0.213 Sum_probs=75.4
Q ss_pred CCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccc-cccccc-cccccCccceEeccC-CCCccccc-h
Q 010462 109 RGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNF-IKKIPT-NIEKLLHLKYLSLFG-QKKIEKLP-E 184 (510)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~lp~-~i~~l~~L~~L~l~~-~~~~~~lp-~ 184 (510)
++|+.|++++|. +..+.+..|..+++|++|+++ ++. +..++. .+.++++|++|++++ |. ++.+| .
T Consensus 31 ~~l~~L~l~~n~---l~~i~~~~~~~l~~L~~L~l~-------~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~ 99 (239)
T 2xwt_C 31 PSTQTLKLIETH---LRTIPSHAFSNLPNISRIYVS-------IDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPD 99 (239)
T ss_dssp TTCCEEEEESCC---CSEECTTTTTTCTTCCEEEEE-------CCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTT
T ss_pred CcccEEEEeCCc---ceEECHHHccCCCCCcEEeCC-------CCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHH
Confidence 378888888887 455455567788888888888 775 777754 677788888888887 66 66665 3
Q ss_pred hhhcccccceeccCCCCccccCchhhhccccCc---eeecCCC
Q 010462 185 TLCELYNLERLNVDHCKNLRELPRGIGKLRKLM---YLHNEGT 224 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~---~L~l~~~ 224 (510)
.+.++++|++|++++|. +..+|. +..+++|+ +|++++|
T Consensus 100 ~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp SEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESC
T ss_pred HhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCC
Confidence 56778888888888877 666776 66677776 7777776
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-18 Score=163.53 Aligned_cols=252 Identities=17% Similarity=0.074 Sum_probs=142.4
Q ss_pred ceeEEEEEeecCCCccccccccccCC--CCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccc--c
Q 010462 83 KILHLMLTLHRGASVPIPIWDNVKGL--RGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKK--I 158 (510)
Q Consensus 83 ~~~~L~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--l 158 (510)
..+++++.++.+. +..+. .+ ++++.|++.+|. +....+. +..+++|++|+++ ++.+.. +
T Consensus 48 ~~~~l~l~~~~~~--~~~~~----~~~~~~l~~L~l~~n~---l~~~~~~-~~~~~~L~~L~L~-------~~~l~~~~~ 110 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTG----RLLSQGVIAFRCPRSF---MDQPLAE-HFSPFRVQHMDLS-------NSVIEVSTL 110 (336)
T ss_dssp TSSEEECTTCBCC--HHHHH----HHHHTTCSEEECTTCE---ECSCCCS-CCCCBCCCEEECT-------TCEECHHHH
T ss_pred hheeeccccccCC--HHHHH----hhhhccceEEEcCCcc---ccccchh-hccCCCCCEEEcc-------CCCcCHHHH
Confidence 3556666555443 22222 44 777788887776 3332333 4567778888887 666543 5
Q ss_pred cccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccc--cCchhhhccccCceeecCCC-ccccc-ccccc
Q 010462 159 PTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLR--ELPRGIGKLRKLMYLHNEGT-DSLRY-LPAGI 234 (510)
Q Consensus 159 p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~lp~~~~~l~~L~~L~l~~~-~~~~~-~p~~l 234 (510)
|..+..+++|++|++++|......|..+..+++|++|++++|..+. .+|..+..+++|++|++++| ..... ++..+
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence 6667777888888888777333566677777888888888774344 35666777788888888777 33221 45556
Q ss_pred cCcc-cccccCcEEEe--CccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcc
Q 010462 235 GELI-RLRSVRKFVVG--GGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEE 311 (510)
Q Consensus 235 ~~l~-~L~~L~l~~~~--~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 311 (510)
..++ +|+.|++.++. ... ......+..+++|+.|++.++..+.. .....+..+++|+.|++++|. .
T Consensus 191 ~~l~~~L~~L~l~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~l~~L~~L~l~~~~-~----- 259 (336)
T 2ast_B 191 AHVSETITQLNLSGYRKNLQK--SDLSTLVRRCPNLVHLDLSDSVMLKN---DCFQEFFQLNYLQHLSLSRCY-D----- 259 (336)
T ss_dssp HHSCTTCCEEECCSCGGGSCH--HHHHHHHHHCTTCSEEECTTCTTCCG---GGGGGGGGCTTCCEEECTTCT-T-----
T ss_pred HhcccCCCEEEeCCCcccCCH--HHHHHHHhhCCCCCEEeCCCCCcCCH---HHHHHHhCCCCCCEeeCCCCC-C-----
Confidence 6666 77777666552 111 11222334455566666655432221 122344555666666666653 0
Q ss_pred cccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhh-hcccceeccCccCCCcCCC
Q 010462 312 RAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSL-TNLRFLFLFGWRNCEHLPP 378 (510)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l-~~L~~L~L~~~~~~~~l~~ 378 (510)
........+..+++|+.|++++| ... ..+..+ .++..|++++|...+..|.
T Consensus 260 ----------~~~~~~~~l~~~~~L~~L~l~~~-i~~-----~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 260 ----------IIPETLLELGEIPTLKTLQVFGI-VPD-----GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp ----------CCGGGGGGGGGCTTCCEEECTTS-SCT-----TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred ----------CCHHHHHHHhcCCCCCEEeccCc-cCH-----HHHHHHHhhCcceEEecccCccccCC
Confidence 11112233445667777777766 221 223333 3466666666655544443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.3e-19 Score=170.48 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=66.9
Q ss_pred cCCCCccEEEeccCCcCccc-cchhHhhhcCCceeEEEecccccccccccccc----ccccc-------cccCccceEec
Q 010462 106 KGLRGLRSLLVESGEYSWSN-EILPQLFDKLTCLRALKLEVREQGLYTNFIKK----IPTNI-------EKLLHLKYLSL 173 (510)
Q Consensus 106 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----lp~~i-------~~l~~L~~L~l 173 (510)
..+++|+.|++++|.+.... ..++..+..+++|++|+++ ++.+.. +|..+ ..+++|++|++
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls-------~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS-------DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECC-------SCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCc-------ccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 36777777777777621110 0123335677777777777 543332 23333 56777777777
Q ss_pred cCCCCccc-----cchhhhcccccceeccCCCCcccc----Cchhhhcc---------ccCceeecCCCcc
Q 010462 174 FGQKKIEK-----LPETLCELYNLERLNVDHCKNLRE----LPRGIGKL---------RKLMYLHNEGTDS 226 (510)
Q Consensus 174 ~~~~~~~~-----lp~~~~~l~~L~~L~L~~~~~~~~----lp~~~~~l---------~~L~~L~l~~~~~ 226 (510)
++|. ++. +|..+..+++|++|+|++|..... ++..+..+ ++|++|++++|..
T Consensus 102 s~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 102 SDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp CSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred CCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 7777 444 666677777777777777763221 22333334 6777777777643
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-17 Score=151.72 Aligned_cols=125 Identities=23% Similarity=0.358 Sum_probs=74.9
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccch-h
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPE-T 185 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~ 185 (510)
.+++|+.|.+.+|. +.. ++. +..+++|++|+++ +|.+..++ .+..+++|++|++++|. ++.+|. .
T Consensus 39 ~l~~L~~L~l~~~~---i~~-~~~-l~~l~~L~~L~l~-------~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~ 104 (272)
T 3rfs_A 39 ELNSIDQIIANNSD---IKS-VQG-IQYLPNVRYLALG-------GNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGV 104 (272)
T ss_dssp HHTTCCEEECTTSC---CCC-CTT-GGGCTTCCEEECT-------TSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTT
T ss_pred cccceeeeeeCCCC---ccc-ccc-cccCCCCcEEECC-------CCCCCCch-hhcCCCCCCEEECCCCc-cCccChhH
Confidence 56677777777765 222 222 6667777777777 66666653 56667777777777776 555543 3
Q ss_pred hhcccccceeccCCCCccccCch-hhhccccCceeecCCCcccccccccccCcccccccCcE
Q 010462 186 LCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKF 246 (510)
Q Consensus 186 ~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 246 (510)
+.++++|++|++++|. +..+|. .+..+++|++|++++|......+..++.+++|+.|++.
T Consensus 105 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred hcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence 5667777777777776 444443 35667777777777763322222224455555555444
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-18 Score=167.37 Aligned_cols=245 Identities=19% Similarity=0.093 Sum_probs=129.4
Q ss_pred hhHhhhcCCceeEEEecccccccccccccc-----ccccccccCccceEeccCCCCcc----ccchhh-------hcccc
Q 010462 128 LPQLFDKLTCLRALKLEVREQGLYTNFIKK-----IPTNIEKLLHLKYLSLFGQKKIE----KLPETL-------CELYN 191 (510)
Q Consensus 128 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~----~lp~~~-------~~l~~ 191 (510)
++..+..+++|++|+++ +|.+.. ++..+..+++|++|++++|. +. .+|..+ ..+++
T Consensus 24 l~~~l~~~~~L~~L~L~-------~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLS-------GNTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp TSHHHHHCSCCCEEECT-------TSEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHHhcCCCccEEECC-------CCCCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCc
Confidence 34446666667777776 555443 33345566677777776653 22 233333 45667
Q ss_pred cceeccCCCCccc----cCchhhhccccCceeecCCCccccc----ccccccCc---------ccccccCcEEEeCcc-C
Q 010462 192 LERLNVDHCKNLR----ELPRGIGKLRKLMYLHNEGTDSLRY----LPAGIGEL---------IRLRSVRKFVVGGGY-D 253 (510)
Q Consensus 192 L~~L~L~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l---------~~L~~L~l~~~~~~~-~ 253 (510)
|++|+|++|.... .+|..+.++++|++|++++|..... ++..+..+ ++|++|++..+.... .
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 7777777666332 2555666667777777776643221 22223333 566666666555432 0
Q ss_pred CccCcccccccccCCCceecCcccCCChhhhhHh-hccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCC
Q 010462 254 RACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRA-ELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGP 332 (510)
Q Consensus 254 ~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 332 (510)
.......+..+++|+.|++.++.-.......... .+..+++|+.|++++|.. .......++..+..
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l-------------~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-------------THLGSSALAIALKS 242 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC-------------HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC-------------CcHHHHHHHHHHcc
Confidence 0111123445556666666653211101111222 555666777777776651 00112445556666
Q ss_pred CCCccEEEEeecCCccCC---CchhHHhh--hhcccceeccCccCCC----cCCC-C-CCCCccceeeccCcc
Q 010462 333 PPNLKKLRIDEYRGRRNV---VPISWFMS--LTNLRFLFLFGWRNCE----HLPP-L-GKLPSLEYLEIEGMK 394 (510)
Q Consensus 333 ~~~L~~L~l~~~~~~~~~---~p~~~~~~--l~~L~~L~L~~~~~~~----~l~~-~-~~l~~L~~L~L~~~~ 394 (510)
+++|++|++++|.+.... ++ .++.. +++|++|+|++|.... .+|. + .++++|++|+|++|+
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVV-DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHH-HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCcCEEECCCCCCchhhHHHHH-HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 677777777777654310 12 23322 6677777777775444 2443 3 456777777777765
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-17 Score=150.66 Aligned_cols=199 Identities=18% Similarity=0.171 Sum_probs=151.8
Q ss_pred CceeEEEEEeecCCCccc-cccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-
Q 010462 82 TKILHLMLTLHRGASVPI-PIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP- 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp- 159 (510)
..+++|++.++.+...+. .+. ++++|++|++++|. +..+.+..|..+++|++|+++ +|.+..++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~----~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~ 93 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFF----SFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILT-------GNPIQSLAL 93 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTT----TCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TCCCCEECT
T ss_pred CCccEEECCCCcccccCHhHhc----cccCCcEEECCCCc---CCccCHHHccCCcCCCEEECC-------CCccCccCh
Confidence 779999999998876544 344 89999999999998 556566679999999999999 99988875
Q ss_pred ccccccCccceEeccCCCCccccch-hhhcccccceeccCCCCcccc--CchhhhccccCceeecCCCcccccccccccC
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRE--LPRGIGKLRKLMYLHNEGTDSLRYLPAGIGE 236 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 236 (510)
..+.++++|++|++++|. +..++. .+..+++|++|++++|. +.. +|..+..+++|++|++++|......+..+..
T Consensus 94 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred hhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 678999999999999999 666655 68999999999999998 544 7899999999999999999655555566777
Q ss_pred ccccc----ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecC
Q 010462 237 LIRLR----SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGH 304 (510)
Q Consensus 237 l~~L~----~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 304 (510)
+.+|+ .|++..+.... .........+|+.|++.+.. +. ......+..+++|+.|++++|.
T Consensus 172 l~~L~~l~l~L~ls~n~l~~----~~~~~~~~~~L~~L~L~~n~-l~---~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNF----IQPGAFKEIRLKELALDTNQ-LK---SVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCE----ECTTSSCSCCEEEEECCSSC-CS---CCCTTTTTTCCSCCEEECCSSC
T ss_pred hhhccccceeeecCCCcccc----cCccccCCCcccEEECCCCc-ee---ecCHhHhcccccccEEEccCCc
Confidence 77777 44454444432 11112222357777777532 22 1223346778999999999886
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=147.77 Aligned_cols=195 Identities=23% Similarity=0.307 Sum_probs=124.8
Q ss_pred eeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc-c
Q 010462 84 ILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN-I 162 (510)
Q Consensus 84 ~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~-i 162 (510)
.+.+.+.++.+..+|..+. ++++.|++++|. +..+.+..|..+++|++|+++ ++.+..+|.. +
T Consensus 18 ~~~l~~~~~~l~~ip~~~~------~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~l~~i~~~~~ 81 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP------ADTKKLDLQSNK---LSSLPSKAFHRLTKLRLLYLN-------DNKLQTLPAGIF 81 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC------TTCSEEECCSSC---CSCCCTTSSSSCTTCCEEECC-------SSCCSCCCTTTT
T ss_pred CCEEEccCCCCCccCCCCC------CCCCEEECcCCC---CCeeCHHHhcCCCCCCEEECC-------CCccCeeChhhh
Confidence 4556666666665554432 567777777776 444445557777778888877 7777777544 4
Q ss_pred cccCccceEeccCCCCccccch-hhhcccccceeccCCCCccccCc-hhhhccccCceeecCCCcccccccc-cccCccc
Q 010462 163 EKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGTDSLRYLPA-GIGELIR 239 (510)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~ 239 (510)
.++++|++|++++|. +..+|. .+..+++|++|++++|. +..+| ..+..+++|++|++++|.. ..+|. .++.+++
T Consensus 82 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 82 KELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTS 158 (270)
T ss_dssp SSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTT
T ss_pred cCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcC-CccCHhHccCCcc
Confidence 667778888887777 666554 35677778888887777 44443 4467777788888777743 44443 3677777
Q ss_pred ccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecC
Q 010462 240 LRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGH 304 (510)
Q Consensus 240 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 304 (510)
|+.|++..+.... .....+..+++|+.|++.+..- . ......+..+++|+.|++++|.
T Consensus 159 L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l-~---~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 159 LKELRLYNNQLKR---VPEGAFDKLTELKTLKLDNNQL-K---RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCEEECCSSCCSC---CCTTTTTTCTTCCEEECCSSCC-S---CCCTTTTTTCTTCCEEECCSSC
T ss_pred cceeEecCCcCcE---eChhHhccCCCcCEEECCCCcC-C---cCCHHHhccccCCCEEEecCCC
Confidence 7777776665542 1223355666777777765321 1 1122345677889999998886
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-17 Score=147.53 Aligned_cols=62 Identities=15% Similarity=0.092 Sum_probs=33.6
Q ss_pred CCCCCCcc-EEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CCCC-CccceeeccCcc
Q 010462 330 LGPPPNLK-KLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKL-PSLEYLEIEGMK 394 (510)
Q Consensus 330 l~~~~~L~-~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l-~~L~~L~L~~~~ 394 (510)
+..+++|+ .|++++|.... +|...+.. ++|+.|++++|+.+..++. +..+ ++|+.|++++|.
T Consensus 151 ~~~l~~L~~~L~l~~n~l~~--i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFTS--VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp TTTTBSSEEEEECCSCCCCE--ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred ccchhcceeEEEcCCCCCcc--cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 44455666 66666666554 55222223 5666666666643333332 5556 666666666654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-16 Score=146.64 Aligned_cols=188 Identities=21% Similarity=0.246 Sum_probs=155.1
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..+++|.+.++.+...+ .+. .+++|+.|++++|. +.. ++. +..+++|++|+++ +|.+..++ .
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~----~l~~L~~L~L~~n~---i~~-~~~-~~~l~~L~~L~L~-------~n~l~~~~-~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQ----YLNNLIGLELKDNQ---ITD-LAP-LKNLTKITELELS-------GNPLKNVS-A 102 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGG----GCTTCCEEECCSSC---CCC-CGG-GTTCCSCCEEECC-------SCCCSCCG-G
T ss_pred CCcCEEEeeCCCccCch-hhh----ccCCCCEEEccCCc---CCC-Chh-HccCCCCCEEEcc-------CCcCCCch-h
Confidence 67899999988877654 344 89999999999998 445 344 8999999999999 99988886 5
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
+..+++|++|++++|. ++.+|. +..+++|++|++++|. +..+|. +..+++|++|++++|. +..++. +..+++|+
T Consensus 103 ~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~ 176 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLT 176 (308)
T ss_dssp GTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCC
T ss_pred hcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCC
Confidence 8899999999999999 888886 9999999999999998 777776 8999999999999994 455655 88999999
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecC
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGH 304 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 304 (510)
.|++..+.... +..+..+++|+.|++.+..- .... .+..+++|+.|++++|.
T Consensus 177 ~L~l~~n~l~~-----~~~l~~l~~L~~L~L~~N~l-~~~~-----~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 177 TLKADDNKISD-----ISPLASLPNLIEVHLKNNQI-SDVS-----PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp EEECCSSCCCC-----CGGGGGCTTCCEEECTTSCC-CBCG-----GGTTCTTCCEEEEEEEE
T ss_pred EEECCCCccCc-----ChhhcCCCCCCEEEccCCcc-Cccc-----cccCCCCCCEEEccCCe
Confidence 99998876653 23377888899999887432 2111 37789999999999997
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=152.17 Aligned_cols=99 Identities=17% Similarity=0.119 Sum_probs=50.1
Q ss_pred CccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CCCCCccceeeccCccccEEecccccCCCCCCCC
Q 010462 335 NLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDG 412 (510)
Q Consensus 335 ~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 412 (510)
.++.|++++|.+.. +| .......+|+.|.+.++..++.+|. ++.+++|++|+|++|. ++.+|..
T Consensus 155 ~l~~L~L~~N~i~~--i~-~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~---------- 220 (350)
T 4ay9_X 155 ESVILWLNKNGIQE--IH-NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY---------- 220 (350)
T ss_dssp SCEEEECCSSCCCE--EC-TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS----------
T ss_pred hhhhhccccccccC--CC-hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh----------
Confidence 45555566555554 44 2223345566666655545555553 5566666666666654 4444321
Q ss_pred CccccccccccccccccccccccccccccccccccCcccceeeecc
Q 010462 413 SSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWS 458 (510)
Q Consensus 413 ~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 458 (510)
.|.+|+.|.+.++.+++.+.. +..+++|+.+++.+
T Consensus 221 ----~~~~L~~L~~l~~~~l~~lP~-------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 ----GLENLKKLRARSTYNLKKLPT-------LEKLVALMEASLTY 255 (350)
T ss_dssp ----SCTTCCEEECTTCTTCCCCCC-------TTTCCSCCEEECSC
T ss_pred ----hhccchHhhhccCCCcCcCCC-------chhCcChhhCcCCC
Confidence 344445554444444444321 23455666666543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-17 Score=158.54 Aligned_cols=105 Identities=16% Similarity=0.245 Sum_probs=52.6
Q ss_pred CCccEEEeccCCcCccccchh----HhhhcCC-ceeEEEeccccccccccccccc-ccccccc-----CccceEeccCCC
Q 010462 109 RGLRSLLVESGEYSWSNEILP----QLFDKLT-CLRALKLEVREQGLYTNFIKKI-PTNIEKL-----LHLKYLSLFGQK 177 (510)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l-----~~L~~L~l~~~~ 177 (510)
++|+.|++++|. +....+ ..|..++ +|++|+++ +|.+... +..+..+ ++|++|++++|.
T Consensus 22 ~~L~~L~Ls~n~---l~~~~~~~l~~~l~~~~~~L~~L~Ls-------~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 22 HGVTSLDLSLNN---LYSISTVELIQAFANTPASVTSLNLS-------GNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp TTCCEEECTTSC---GGGSCHHHHHHHHHTCCTTCCEEECC-------SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred CCceEEEccCCC---CChHHHHHHHHHHHhCCCceeEEECc-------CCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 346666666665 222222 4455555 56666666 5555443 3334443 566666666666
Q ss_pred Ccccc-chhh----hcc-cccceeccCCCCccccCc-hhhh----c-cccCceeecCCCc
Q 010462 178 KIEKL-PETL----CEL-YNLERLNVDHCKNLRELP-RGIG----K-LRKLMYLHNEGTD 225 (510)
Q Consensus 178 ~~~~l-p~~~----~~l-~~L~~L~L~~~~~~~~lp-~~~~----~-l~~L~~L~l~~~~ 225 (510)
++.. +..+ ..+ ++|++|++++|. +...+ ..+. . .++|++|++++|.
T Consensus 92 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 92 -LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp -GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred -CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 4332 2222 223 566666666666 33332 2222 2 2456666666653
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.8e-16 Score=147.90 Aligned_cols=238 Identities=16% Similarity=0.129 Sum_probs=156.4
Q ss_pred eEEEeccccccccccccccccccccccCccceEeccCCCCccccch-hhhcccccceeccCCCCccccCch-hhhccccC
Q 010462 139 RALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPR-GIGKLRKL 216 (510)
Q Consensus 139 ~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L 216 (510)
++++.+ ++.+..+|..+ ..++++|+|++|. ++.+|. +|.++++|++|+|++|...+.+|. .+.++++|
T Consensus 12 ~~v~C~-------~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l 81 (350)
T 4ay9_X 12 RVFLCQ-------ESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81 (350)
T ss_dssp TEEEEE-------STTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred CEEEec-------CCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence 456666 77777787766 3578888888887 777775 467788888888888875555654 35667776
Q ss_pred ceeec-CCCcccccc-cccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCC
Q 010462 217 MYLHN-EGTDSLRYL-PAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKS 294 (510)
Q Consensus 217 ~~L~l-~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~ 294 (510)
+.+.. .+| .+..+ |..++.+++|+.|++..+....
T Consensus 82 ~~~l~~~~N-~l~~l~~~~f~~l~~L~~L~l~~n~l~~------------------------------------------ 118 (350)
T 4ay9_X 82 HEIRIEKAN-NLLYINPEAFQNLPNLQYLLISNTGIKH------------------------------------------ 118 (350)
T ss_dssp CEEEEEEET-TCCEECTTSBCCCTTCCEEEEEEECCSS------------------------------------------
T ss_pred hhhhcccCC-cccccCchhhhhcccccccccccccccc------------------------------------------
Confidence 65433 334 33333 3445666666666665554331
Q ss_pred CCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhh-hcccceeccCccCC
Q 010462 295 LLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSL-TNLRFLFLFGWRNC 373 (510)
Q Consensus 295 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l-~~L~~L~L~~~~~~ 373 (510)
. ....+....++..|++.++..... ++...+..+ ..++.|++++|...
T Consensus 119 -------------~-----------------~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 119 -------------L-----------------PDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp -------------C-----------------CCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSCEEEECCSSCCC
T ss_pred -------------C-----------------Cchhhcccchhhhhhhcccccccc-ccccchhhcchhhhhhcccccccc
Confidence 0 000111223345555544332221 332333333 46889999999544
Q ss_pred CcCCC-CCCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccc
Q 010462 374 EHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLS 452 (510)
Q Consensus 374 ~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~ 452 (510)
.++. ....++|++|.+.++..++.++.+.+ ..+++|+.|+++++. ++.+.. ..+.+|+
T Consensus 168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f-----------~~l~~L~~LdLs~N~-l~~lp~--------~~~~~L~ 226 (350)
T 4ay9_X 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVF-----------HGASGPVILDISRTR-IHSLPS--------YGLENLK 226 (350)
T ss_dssp -EECTTSSTTEEEEEEECTTCTTCCCCCTTTT-----------TTEECCSEEECTTSC-CCCCCS--------SSCTTCC
T ss_pred -CCChhhccccchhHHhhccCCcccCCCHHHh-----------ccCcccchhhcCCCC-cCccCh--------hhhccch
Confidence 4544 56678999999998877888876543 378999999999985 766542 2578889
Q ss_pred eeeeccCcccccCCcccCCCCCCcEEEEcC
Q 010462 453 SLTIWSCRKLKALPDHLLQKTTLQKLHIRR 482 (510)
Q Consensus 453 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 482 (510)
.|.+.+|..++.+| .+..+++|+.+++.+
T Consensus 227 ~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 227 KLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp EEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred HhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 99999999999999 477899999999975
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.9e-17 Score=154.89 Aligned_cols=254 Identities=13% Similarity=0.042 Sum_probs=136.6
Q ss_pred EeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-----ccccccC-ccceEeccCCCCcccc-chhhh
Q 010462 115 LVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-----TNIEKLL-HLKYLSLFGQKKIEKL-PETLC 187 (510)
Q Consensus 115 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-----~~i~~l~-~L~~L~l~~~~~~~~l-p~~~~ 187 (510)
.++.|. +.+.+|.++...++|++|+++ +|.+...+ ..+.+++ +|++|++++|. ++.. +..+.
T Consensus 4 ~ls~n~---~~~~~~~~~~~~~~L~~L~Ls-------~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~ 72 (362)
T 3goz_A 4 KLTLHP---GSNPVEEFTSIPHGVTSLDLS-------LNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELV 72 (362)
T ss_dssp ECCCCT---TCCHHHHHHTSCTTCCEEECT-------TSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHH
T ss_pred cccccc---chHHHHHHHhCCCCceEEEcc-------CCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHH
Confidence 445554 344456655555557777777 66666553 4555666 67777777776 4443 44455
Q ss_pred cc-----cccceeccCCCCccccCchhhh----cc-ccCceeecCCCccccccccc----ccC-cccccccCcEEEeCcc
Q 010462 188 EL-----YNLERLNVDHCKNLRELPRGIG----KL-RKLMYLHNEGTDSLRYLPAG----IGE-LIRLRSVRKFVVGGGY 252 (510)
Q Consensus 188 ~l-----~~L~~L~L~~~~~~~~lp~~~~----~l-~~L~~L~l~~~~~~~~~p~~----l~~-l~~L~~L~l~~~~~~~ 252 (510)
.+ ++|++|++++|......+..+. .+ ++|++|++++|......+.. +.. .++|++|++..+....
T Consensus 73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 54 6777777777773333333333 33 67777777777543322222 222 2467777666655442
Q ss_pred CCc-cCcccccccc-cCCCceecCcccCCChhhhhHhhccCC-CCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhcc
Q 010462 253 DRA-CSLGSLKKLN-LLRDCRIRGLGDVSDAGEARRAELEKK-KSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEA 329 (510)
Q Consensus 253 ~~~-~~~~~l~~l~-~L~~l~i~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (510)
... .....+..++ +|+.|++.++.-...........+... ++|+.|++++|.... .....++..
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~-------------~~~~~l~~~ 219 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL-------------KSYAELAYI 219 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG-------------SCHHHHHHH
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh-------------hHHHHHHHH
Confidence 100 1112223333 666666665432222222333344445 477777777775111 112233444
Q ss_pred CCC-CCCccEEEEeecCCccCCCchh----HHhhhhcccceeccCccCCC-------cCC-CCCCCCccceeeccCcc
Q 010462 330 LGP-PPNLKKLRIDEYRGRRNVVPIS----WFMSLTNLRFLFLFGWRNCE-------HLP-PLGKLPSLEYLEIEGMK 394 (510)
Q Consensus 330 l~~-~~~L~~L~l~~~~~~~~~~p~~----~~~~l~~L~~L~L~~~~~~~-------~l~-~~~~l~~L~~L~L~~~~ 394 (510)
+.. .++|+.|++++|.+.. .+.. .+..+++|+.|++++|.... .++ .+..+++|+.|++++|.
T Consensus 220 l~~~~~~L~~L~Ls~N~l~~--~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLNCLHG--PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHSCTTCCEEECCSSCCCC--CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HhcCCCCceEEECcCCCCCc--HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 433 3577788887777665 3311 22356778888887775211 112 25677888888888876
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=143.92 Aligned_cols=202 Identities=19% Similarity=0.090 Sum_probs=113.7
Q ss_pred CCCCccEEEeccCCcCccccchhHhh--hcCCceeEEEeccccccccccccccc-c----ccccccCccceEeccCCCCc
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLF--DKLTCLRALKLEVREQGLYTNFIKKI-P----TNIEKLLHLKYLSLFGQKKI 179 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~l-p----~~i~~l~~L~~L~l~~~~~~ 179 (510)
.+++|+.|++++|. +....|..+ ..+++|++|+++ +|.+... + ..+..+++|++|++++|. +
T Consensus 89 ~~~~L~~L~l~~n~---l~~~~~~~~~~~~~~~L~~L~Ls-------~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l 157 (310)
T 4glp_A 89 AYSRLKELTLEDLK---ITGTMPPLPLEATGLALSSLRLR-------NVSWATGRSWLAELQQWLKPGLKVLSIAQAH-S 157 (310)
T ss_dssp HHSCCCEEEEESCC---CBSCCCCCSSSCCCBCCSSCEEE-------SCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-S
T ss_pred ccCceeEEEeeCCE---eccchhhhhhhccCCCCCEEEee-------cccccchhhhhHHHHhhhccCCCEEEeeCCC-c
Confidence 34567777777776 333344444 667777777777 6665532 1 233456777777777777 4
Q ss_pred ccc-chhhhcccccceeccCCCCcccc--Cc--hhhhccccCceeecCCCccccccccc----ccCcccccccCcEEEeC
Q 010462 180 EKL-PETLCELYNLERLNVDHCKNLRE--LP--RGIGKLRKLMYLHNEGTDSLRYLPAG----IGELIRLRSVRKFVVGG 250 (510)
Q Consensus 180 ~~l-p~~~~~l~~L~~L~L~~~~~~~~--lp--~~~~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~l~~~~~ 250 (510)
..+ |..+..+++|++|++++|..... ++ ..++.+++|++|++++|.. ..+|.. ++.+++|++|+++++..
T Consensus 158 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l 236 (310)
T 4glp_A 158 PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSL 236 (310)
T ss_dssp CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCC
T ss_pred chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCC
Confidence 443 35566777777777777763221 22 2235667777777777733 333331 35566777776665544
Q ss_pred ccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccC
Q 010462 251 GYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEAL 330 (510)
Q Consensus 251 ~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (510)
... .+..+..+ ..+++|+.|++++|... .++..+
T Consensus 237 ~~~---~p~~~~~~-------------------------~~~~~L~~L~Ls~N~l~------------------~lp~~~ 270 (310)
T 4glp_A 237 RAT---VNPSAPRC-------------------------MWSSALNSLNLSFAGLE------------------QVPKGL 270 (310)
T ss_dssp CCC---CCSCCSSC-------------------------CCCTTCCCEECCSSCCC------------------SCCSCC
T ss_pred Ccc---chhhHHhc-------------------------cCcCcCCEEECCCCCCC------------------chhhhh
Confidence 320 01111111 11235555555555411 122223
Q ss_pred CCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccC
Q 010462 331 GPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRN 372 (510)
Q Consensus 331 ~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~ 372 (510)
+++|+.|++++|.+.. +| . +..+++|+.|++++|..
T Consensus 271 --~~~L~~L~Ls~N~l~~--~~-~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 271 --PAKLRVLDLSSNRLNR--AP-Q-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp --CSCCSCEECCSCCCCS--CC-C-TTSCCCCSCEECSSTTT
T ss_pred --cCCCCEEECCCCcCCC--Cc-h-hhhCCCccEEECcCCCC
Confidence 2678888888887776 56 3 46778888888888754
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=136.81 Aligned_cols=148 Identities=23% Similarity=0.256 Sum_probs=95.2
Q ss_pred eeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccc
Q 010462 84 ILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNI 162 (510)
Q Consensus 84 ~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i 162 (510)
.+++++.++....+|..+. ++++.|++++|. +..+.+..|..+++|++|+++ +|.+..++ ..+
T Consensus 16 ~~~l~~~~~~l~~~p~~~~------~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~ 79 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP------ADTEKLDLQSTG---LATLSDATFRGLTKLTWLNLD-------YNQLQTLSAGVF 79 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC------TTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECT-------TSCCCCCCTTTT
T ss_pred CeEEecCCCCccccCCCCC------CCCCEEEccCCC---cCccCHhHhcCcccCCEEECC-------CCcCCccCHhHh
Confidence 3455666666665555443 567777777776 444455557777777777777 77766663 446
Q ss_pred cccCccceEeccCCCCccccc-hhhhcccccceeccCCCCccccCchh-hhccccCceeecCCCcccccccc-cccCccc
Q 010462 163 EKLLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPA-GIGELIR 239 (510)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~ 239 (510)
..+++|++|++++|. ++.+| ..+..+++|++|++++|. +..+|.. +..+++|++|++++|.. ..+|. .++.+++
T Consensus 80 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~ 156 (251)
T 3m19_A 80 DDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTN 156 (251)
T ss_dssp TTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTT
T ss_pred ccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcC
Confidence 677777777777777 55554 345677777777777776 5555544 46677777777777743 34443 4666677
Q ss_pred ccccCcEEEeC
Q 010462 240 LRSVRKFVVGG 250 (510)
Q Consensus 240 L~~L~l~~~~~ 250 (510)
|+.|++..+..
T Consensus 157 L~~L~L~~N~l 167 (251)
T 3m19_A 157 LQTLSLSTNQL 167 (251)
T ss_dssp CCEEECCSSCC
T ss_pred CCEEECCCCcC
Confidence 77776655433
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-15 Score=129.00 Aligned_cols=149 Identities=12% Similarity=0.141 Sum_probs=115.9
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccc-ccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKK-IPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-lp~ 160 (510)
..+++|.+.++.+..++ .+. .+++|+.|++++|. +.. ++ .+..+++|++|+++ +|.+.. .|.
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~----~l~~L~~L~l~~n~---~~~-~~-~l~~l~~L~~L~l~-------~n~l~~~~~~ 106 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIE----YAHNIKDLTINNIH---ATN-YN-PISGLSNLERLRIM-------GKDVTSDKIP 106 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGG----GCTTCSEEEEESCC---CSC-CG-GGTTCTTCCEEEEE-------CTTCBGGGSC
T ss_pred CCccEEeccCCCccChH-HHh----cCCCCCEEEccCCC---CCc-ch-hhhcCCCCCEEEeE-------CCccCcccCh
Confidence 67888999888877555 444 88999999999986 333 33 37888999999998 888775 577
Q ss_pred cccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 240 (510)
.++.+++|++|++++|.+....|..+..+++|++|++++|..+..+| .+..+++|++|++++|. +..++ .+..+++|
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L 183 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKL 183 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSC
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCC
Confidence 88889999999999998433467778899999999999987677777 58889999999999884 44455 67778888
Q ss_pred cccCcEEEeC
Q 010462 241 RSVRKFVVGG 250 (510)
Q Consensus 241 ~~L~l~~~~~ 250 (510)
+.|++.++.+
T Consensus 184 ~~L~l~~N~i 193 (197)
T 4ezg_A 184 NQLYAFSQTI 193 (197)
T ss_dssp CEEEECBC--
T ss_pred CEEEeeCccc
Confidence 8888776554
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-15 Score=134.96 Aligned_cols=155 Identities=23% Similarity=0.285 Sum_probs=129.2
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-T 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~ 160 (510)
..++.|.+.++.+...+.. .+..+++|+.|++++|. +..+.+..|..+++|++|+++ +|.+..+| .
T Consensus 35 ~~l~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~ 101 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDA---TFRGLTKLTWLNLDYNQ---LQTLSAGVFDDLTELGTLGLA-------NNQLASLPLG 101 (251)
T ss_dssp TTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECT-------TSCCCCCCTT
T ss_pred CCCCEEEccCCCcCccCHh---HhcCcccCCEEECCCCc---CCccCHhHhccCCcCCEEECC-------CCcccccChh
Confidence 7899999999988764432 23489999999999998 555577778999999999999 99998886 5
Q ss_pred cccccCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCch-hhhccccCceeecCCCcccccccccccCcc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLRYLPAGIGELI 238 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 238 (510)
.+..+++|++|++++|. ++.+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++|......+..+..++
T Consensus 102 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred HhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence 67889999999999999 7777765 6889999999999998 667766 588999999999999965544445788899
Q ss_pred cccccCcEEEeCc
Q 010462 239 RLRSVRKFVVGGG 251 (510)
Q Consensus 239 ~L~~L~l~~~~~~ 251 (510)
+|+.|++.++...
T Consensus 180 ~L~~L~l~~N~~~ 192 (251)
T 3m19_A 180 KLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSCCBC
T ss_pred CCCEEEeeCCcee
Confidence 9999988776553
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-15 Score=152.89 Aligned_cols=173 Identities=23% Similarity=0.243 Sum_probs=89.7
Q ss_pred hhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhh
Q 010462 132 FDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIG 211 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~ 211 (510)
+..+++|+.|+++ ++.+..+| .+..+++|++|+|++|. +..+|. +..+++|+.|+|++|. +..+| .+.
T Consensus 39 ~~~L~~L~~L~l~-------~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~ 106 (605)
T 1m9s_A 39 QNELNSIDQIIAN-------NSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLK 106 (605)
T ss_dssp HHHHTTCCCCBCT-------TCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TST
T ss_pred hhcCCCCCEEECc-------CCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhc
Confidence 3445555555555 55555554 35555555555555555 444544 5555555555555555 44444 355
Q ss_pred ccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccC
Q 010462 212 KLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEK 291 (510)
Q Consensus 212 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~ 291 (510)
.+++|++|++++|.. ..++ .+..+++|+.|++..+.... + ..+..
T Consensus 107 ~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L~Ls~N~l~~-----l----------------------------~~l~~ 151 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGI-SDIN-GLVHLPQLESLYLGNNKITD-----I----------------------------TVLSR 151 (605)
T ss_dssp TCTTCCEEECTTSCC-CCCG-GGGGCTTCSEEECCSSCCCC-----C----------------------------GGGGS
T ss_pred cCCCCCEEEecCCCC-CCCc-cccCCCccCEEECCCCccCC-----c----------------------------hhhcc
Confidence 555555555555532 2222 23344444444333221110 0 12233
Q ss_pred CCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCcc
Q 010462 292 KKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWR 371 (510)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~ 371 (510)
+++|+.|+++.|... . .+. +..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.
T Consensus 152 l~~L~~L~Ls~N~l~-----------------~-~~~-l~~l~~L~~L~Ls~N~i~~--l~--~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 152 LTKLDTLSLEDNQIS-----------------D-IVP-LAGLTKLQNLYLSKNHISD--LR--ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CTTCSEEECCSSCCC-----------------C-CGG-GTTCTTCCEEECCSSCCCB--CG--GGTTCTTCSEEECCSEE
T ss_pred cCCCCEEECcCCcCC-----------------C-chh-hccCCCCCEEECcCCCCCC--Ch--HHccCCCCCEEEccCCc
Confidence 445555555555411 1 111 5566777778887777665 55 35677777777777775
Q ss_pred CCC
Q 010462 372 NCE 374 (510)
Q Consensus 372 ~~~ 374 (510)
...
T Consensus 209 l~~ 211 (605)
T 1m9s_A 209 CLN 211 (605)
T ss_dssp EEC
T ss_pred CcC
Confidence 443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.57 E-value=9.6e-15 Score=135.87 Aligned_cols=141 Identities=23% Similarity=0.270 Sum_probs=66.9
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..++.|.+.++.+...+ .+. .+++|+.|++++|. +.. ++. +..+++|++|+++ +|.+..+|.
T Consensus 46 ~~L~~L~l~~~~i~~~~-~~~----~l~~L~~L~L~~n~---l~~-~~~-l~~l~~L~~L~l~-------~n~l~~~~~- 107 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ-GIQ----YLPNVTKLFLNGNK---LTD-IKP-LANLKNLGWLFLD-------ENKVKDLSS- 107 (291)
T ss_dssp HTCCEEECTTSCCCCCT-TGG----GCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECC-------SSCCCCGGG-
T ss_pred CcccEEEccCCCcccCh-hHh----cCCCCCEEEccCCc---cCC-Ccc-cccCCCCCEEECC-------CCcCCCChh-
Confidence 34455555554444332 122 45555555555554 222 122 4555555555555 555544433
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
+..+++|++|++++|. +..++ .+..+++|+.|++++|. +..+ ..+..+++|++|++++|.. ..++. +..+++|+
T Consensus 108 l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l-~~~~~-l~~l~~L~ 181 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQ 181 (291)
T ss_dssp GTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCC-CCCGG-GTTCTTCC
T ss_pred hccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCcc-ccchh-hcCCCccC
Confidence 4555555555555555 44443 25555555555555555 3333 2355555555555555522 22222 44444444
Q ss_pred ccCcE
Q 010462 242 SVRKF 246 (510)
Q Consensus 242 ~L~l~ 246 (510)
.|++.
T Consensus 182 ~L~L~ 186 (291)
T 1h6t_A 182 NLYLS 186 (291)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 44443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-15 Score=130.30 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=106.1
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+++|+.|++++|. +.. +| .+..+++|++|+++ +|.+..++ .+..+++|++|++++|.+....|..+
T Consensus 42 ~l~~L~~L~l~~n~---i~~-l~-~l~~l~~L~~L~l~-------~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 42 QMNSLTYITLANIN---VTD-LT-GIEYAHNIKDLTIN-------NIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp HHHTCCEEEEESSC---CSC-CT-TGGGCTTCSEEEEE-------SCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCC
T ss_pred hcCCccEEeccCCC---ccC-hH-HHhcCCCCCEEEcc-------CCCCCcch-hhhcCCCCCEEEeECCccCcccChhh
Confidence 78899999999997 444 45 38899999999999 88776664 68889999999999998333467789
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGG 251 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 251 (510)
..+++|++|++++|......|..+..+++|++|++++|..+..+| .++.+++|+.|++..+...
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 999999999999999555678889999999999999996566666 5777888888877655443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.55 E-value=9e-15 Score=130.04 Aligned_cols=145 Identities=19% Similarity=0.227 Sum_probs=89.9
Q ss_pred EEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccccccc
Q 010462 87 LMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKL 165 (510)
Q Consensus 87 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l 165 (510)
+.+.++.+..+|..+. ++++.|++++|. +..+.+..|..+++|++|+++ +|.+..+ |..|.++
T Consensus 16 v~c~~~~l~~iP~~l~------~~l~~L~l~~n~---i~~i~~~~~~~l~~L~~L~Ls-------~N~i~~~~~~~~~~l 79 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNLP------ETITEIRLEQNT---IKVIPPGAFSPYKKLRRIDLS-------NNQISELAPDAFQGL 79 (220)
T ss_dssp EECTTSCCSSCCSSCC------TTCCEEECCSSC---CCEECTTSSTTCTTCCEEECC-------SSCCCEECTTTTTTC
T ss_pred EEcCCCCcCcCCCccC------cCCCEEECCCCc---CCCcCHhHhhCCCCCCEEECC-------CCcCCCcCHHHhhCC
Confidence 3444444444444332 567777777776 444445556777777777777 6766666 5667777
Q ss_pred CccceEeccCCCCccccchh-hhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccC
Q 010462 166 LHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVR 244 (510)
Q Consensus 166 ~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 244 (510)
++|++|+|++|. ++.+|.. +..+++|++|+|++|......|..+..+++|++|++++|......+..+..+++|+.|+
T Consensus 80 ~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 80 RSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp SSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 777777777777 6666654 46677777777777773333355566777777777777744333334466666666666
Q ss_pred cEEE
Q 010462 245 KFVV 248 (510)
Q Consensus 245 l~~~ 248 (510)
+..+
T Consensus 159 L~~N 162 (220)
T 2v9t_B 159 LAQN 162 (220)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 5544
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-15 Score=136.03 Aligned_cols=166 Identities=20% Similarity=0.228 Sum_probs=97.4
Q ss_pred CCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccc
Q 010462 135 LTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLR 214 (510)
Q Consensus 135 l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~ 214 (510)
+..+..++++ ++.+..++ .+..+++|++|++++|. ++.+| .+..+++|++|++++|. +..+|. +.+++
T Consensus 18 l~~l~~l~l~-------~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~ 85 (263)
T 1xeu_A 18 LANAVKQNLG-------KQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLT 85 (263)
T ss_dssp HHHHHHHHHT-------CSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCS
T ss_pred HHHHHHHHhc-------CCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCC
Confidence 4445555555 55555554 45556666666666665 55565 36666666666666665 555554 66666
Q ss_pred cCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCC
Q 010462 215 KLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKS 294 (510)
Q Consensus 215 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~ 294 (510)
+|++|++++|. +..+|... . ++
T Consensus 86 ~L~~L~L~~N~-l~~l~~~~-~--------------------------------------------------------~~ 107 (263)
T 1xeu_A 86 KLEELSVNRNR-LKNLNGIP-S--------------------------------------------------------AC 107 (263)
T ss_dssp SCCEEECCSSC-CSCCTTCC-C--------------------------------------------------------SS
T ss_pred CCCEEECCCCc-cCCcCccc-c--------------------------------------------------------Cc
Confidence 66666666652 22222110 0 22
Q ss_pred CCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCC
Q 010462 295 LLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCE 374 (510)
Q Consensus 295 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~ 374 (510)
|+.|++++|... . ...+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|...
T Consensus 108 L~~L~L~~N~l~------------------~-~~~l~~l~~L~~L~Ls~N~i~~--~~--~l~~l~~L~~L~L~~N~i~- 163 (263)
T 1xeu_A 108 LSRLFLDNNELR------------------D-TDSLIHLKNLEILSIRNNKLKS--IV--MLGFLSKLEVLDLHGNEIT- 163 (263)
T ss_dssp CCEEECCSSCCS------------------B-SGGGTTCTTCCEEECTTSCCCB--CG--GGGGCTTCCEEECTTSCCC-
T ss_pred ccEEEccCCccC------------------C-ChhhcCcccccEEECCCCcCCC--Ch--HHccCCCCCEEECCCCcCc-
Confidence 333333333200 0 1224556677777777777665 55 4667888888888888543
Q ss_pred cCCCCCCCCccceeeccCcc
Q 010462 375 HLPPLGKLPSLEYLEIEGMK 394 (510)
Q Consensus 375 ~l~~~~~l~~L~~L~L~~~~ 394 (510)
.++.+..+++|+.|++++|+
T Consensus 164 ~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 164 NTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp BCTTSTTCCCCCEEEEEEEE
T ss_pred chHHhccCCCCCEEeCCCCc
Confidence 34668888889999988876
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=129.52 Aligned_cols=145 Identities=28% Similarity=0.373 Sum_probs=104.3
Q ss_pred EEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc-cccc
Q 010462 86 HLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT-NIEK 164 (510)
Q Consensus 86 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~-~i~~ 164 (510)
.+...++....+|..+ .++|+.|++++|. +..+.|..|..+++|++|+++ +|.+..+|. .+..
T Consensus 23 ~v~c~~~~l~~ip~~~------~~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~-------~N~l~~i~~~~~~~ 86 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGI------PTNAQILYLHDNQ---ITKLEPGVFDSLINLKELYLG-------SNQLGALPVGVFDS 86 (229)
T ss_dssp EEECTTSCCSSCCSCC------CTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECC-------SSCCCCCCTTTTTT
T ss_pred EeEccCCCcCccCCCC------CCCCCEEEcCCCc---cCccCHHHhhCccCCcEEECC-------CCCCCCcChhhccc
Confidence 3455555555555543 3778888888887 455456677888888888888 888877764 4577
Q ss_pred cCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCchhhhccccCceeecCCCccccccc-ccccCcccccc
Q 010462 165 LLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLP-AGIGELIRLRS 242 (510)
Q Consensus 165 l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~ 242 (510)
+++|++|++++|. ++.+|.. +..+++|++|++++|. +..+|..+..+++|++|++++|.. ..+| ..+..+++|+.
T Consensus 87 l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 87 LTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTH 163 (229)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCE
T ss_pred CCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCE
Confidence 8888888888887 6666554 5778888888888887 668888888888888888888844 4444 44677777777
Q ss_pred cCcEEEe
Q 010462 243 VRKFVVG 249 (510)
Q Consensus 243 L~l~~~~ 249 (510)
|++.++.
T Consensus 164 L~l~~N~ 170 (229)
T 3e6j_A 164 AYLFGNP 170 (229)
T ss_dssp EECTTSC
T ss_pred EEeeCCC
Confidence 7766544
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=128.95 Aligned_cols=147 Identities=22% Similarity=0.303 Sum_probs=126.5
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..++.|.+.++.+...+. +. .+++|+.|++++|. +.. ++. +..+++|++|+++ +|.+..++ .
T Consensus 68 ~~L~~L~L~~n~l~~~~~-l~----~l~~L~~L~l~~n~---l~~-~~~-l~~l~~L~~L~L~-------~n~i~~~~-~ 129 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKP-LA----NLKNLGWLFLDENK---VKD-LSS-LKDLKKLKSLSLE-------HNGISDIN-G 129 (291)
T ss_dssp TTCCEEECCSSCCCCCGG-GT----TCTTCCEEECCSSC---CCC-GGG-GTTCTTCCEEECT-------TSCCCCCG-G
T ss_pred CCCCEEEccCCccCCCcc-cc----cCCCCCEEECCCCc---CCC-Chh-hccCCCCCEEECC-------CCcCCCCh-h
Confidence 789999999998876554 44 99999999999998 444 444 8999999999999 99988874 6
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
+..+++|++|++++|. +..++ .+..+++|++|++++|. +..++. +..+++|++|++++|. +..+|. +..+++|+
T Consensus 130 l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~-i~~l~~-l~~l~~L~ 203 (291)
T 1h6t_A 130 LVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLD 203 (291)
T ss_dssp GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCS
T ss_pred hcCCCCCCEEEccCCc-CCcch-hhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCCc-CCCChh-hccCCCCC
Confidence 8899999999999999 88884 59999999999999998 777776 9999999999999994 456664 88999999
Q ss_pred ccCcEEEeCcc
Q 010462 242 SVRKFVVGGGY 252 (510)
Q Consensus 242 ~L~l~~~~~~~ 252 (510)
.|++..+....
T Consensus 204 ~L~l~~n~i~~ 214 (291)
T 1h6t_A 204 VLELFSQECLN 214 (291)
T ss_dssp EEEEEEEEEEC
T ss_pred EEECcCCcccC
Confidence 99999987654
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-14 Score=127.18 Aligned_cols=148 Identities=16% Similarity=0.118 Sum_probs=104.6
Q ss_pred EEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccch-hHhhhcCCceeEEEeccccccccccccccccc-ccc
Q 010462 86 HLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEIL-PQLFDKLTCLRALKLEVREQGLYTNFIKKIPT-NIE 163 (510)
Q Consensus 86 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~-~i~ 163 (510)
.+.+.++.+..+|..+. +.++.|++++|. +..+. +..|..+++|++|+++ +|.+..++. .|.
T Consensus 15 ~l~~s~n~l~~iP~~~~------~~~~~L~L~~N~---l~~~~~~~~~~~l~~L~~L~L~-------~N~i~~i~~~~~~ 78 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP------QYTAELRLNNNE---FTVLEATGIFKKLPQLRKINFS-------NNKITDIEEGAFE 78 (220)
T ss_dssp EEECCSSCCSSCCSCCC------TTCSEEECCSSC---CCEECCCCCGGGCTTCCEEECC-------SSCCCEECTTTTT
T ss_pred EeEeCCCCcccCccCCC------CCCCEEEcCCCc---CCccCchhhhccCCCCCEEECC-------CCcCCEECHHHhC
Confidence 56666666666665443 456788888887 43432 2347788888888888 888777753 677
Q ss_pred ccCccceEeccCCCCccccch-hhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccc
Q 010462 164 KLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRS 242 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 242 (510)
.+++|++|++++|. +..+|. .+..+++|++|++++|......|..+..+++|++|++++|......|..+..+++|+.
T Consensus 79 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 79 GASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp TCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence 88888888888888 555544 4778888888888888844444667788888888888888554555677777888887
Q ss_pred cCcEEEeC
Q 010462 243 VRKFVVGG 250 (510)
Q Consensus 243 L~l~~~~~ 250 (510)
|++..+..
T Consensus 158 L~L~~N~l 165 (220)
T 2v70_A 158 LNLLANPF 165 (220)
T ss_dssp EECCSCCE
T ss_pred EEecCcCC
Confidence 77765543
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.6e-14 Score=127.64 Aligned_cols=146 Identities=20% Similarity=0.191 Sum_probs=120.9
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..++.|.+.++.+..++ .+. .+++|+.|++++|. +.. ++. +..+++|++|+++ +|.+..+|..
T Consensus 41 ~~L~~L~l~~n~i~~l~-~l~----~l~~L~~L~L~~N~---i~~-~~~-l~~l~~L~~L~L~-------~N~l~~l~~~ 103 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-GMQ----FFTNLKELHLSHNQ---ISD-LSP-LKDLTKLEELSVN-------RNRLKNLNGI 103 (263)
T ss_dssp TTCSEEECTTSCCCCCT-TGG----GCTTCCEEECCSSC---CCC-CGG-GTTCSSCCEEECC-------SSCCSCCTTC
T ss_pred CcCcEEECcCCCcccch-HHh----hCCCCCEEECCCCc---cCC-Chh-hccCCCCCEEECC-------CCccCCcCcc
Confidence 77899999998877655 344 89999999999998 445 333 8899999999999 9998888764
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
.. .+|++|++++|. ++.+|. +..+++|+.|++++|. +..+| .+..+++|++|++++|.. ..+ ..+..+++|+
T Consensus 104 ~~--~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i-~~~-~~l~~l~~L~ 175 (263)
T 1xeu_A 104 PS--ACLSRLFLDNNE-LRDTDS-LIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEI-TNT-GGLTRLKKVN 175 (263)
T ss_dssp CC--SSCCEEECCSSC-CSBSGG-GTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCC-CBC-TTSTTCCCCC
T ss_pred cc--CcccEEEccCCc-cCCChh-hcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcC-cch-HHhccCCCCC
Confidence 33 899999999998 888775 8999999999999998 77776 588999999999999954 444 5688899999
Q ss_pred ccCcEEEeCcc
Q 010462 242 SVRKFVVGGGY 252 (510)
Q Consensus 242 ~L~l~~~~~~~ 252 (510)
.|++.++....
T Consensus 176 ~L~l~~N~~~~ 186 (263)
T 1xeu_A 176 WIDLTGQKCVN 186 (263)
T ss_dssp EEEEEEEEEEC
T ss_pred EEeCCCCcccC
Confidence 99999887654
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.9e-14 Score=120.31 Aligned_cols=131 Identities=24% Similarity=0.214 Sum_probs=85.2
Q ss_pred CCCCccEEEeccCCcCccc-cchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccc-cch
Q 010462 107 GLRGLRSLLVESGEYSWSN-EILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEK-LPE 184 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-lp~ 184 (510)
..++|+.|++++|. +. ..+|..+..+++|++|+++ +|.+..+ ..+..+++|++|++++|. +.. +|.
T Consensus 22 ~~~~L~~L~l~~n~---l~~~~i~~~~~~l~~L~~L~l~-------~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~ 89 (168)
T 2ell_A 22 TPAAVRELVLDNCK---SNDGKIEGLTAEFVNLEFLSLI-------NVGLISV-SNLPKLPKLKKLELSENR-IFGGLDM 89 (168)
T ss_dssp CTTSCSEEECCSCB---CBTTBCSSCCGGGGGCCEEEEE-------SSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCH
T ss_pred CcccCCEEECCCCC---CChhhHHHHHHhCCCCCEEeCc-------CCCCCCh-hhhccCCCCCEEECcCCc-CchHHHH
Confidence 34667777777776 32 1245546677777777777 6666666 566677777777777777 444 666
Q ss_pred hhhcccccceeccCCCCccccCc--hhhhccccCceeecCCCcccccccc----cccCcccccccCcEEEeCc
Q 010462 185 TLCELYNLERLNVDHCKNLRELP--RGIGKLRKLMYLHNEGTDSLRYLPA----GIGELIRLRSVRKFVVGGG 251 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~l~~~~~~ 251 (510)
.+..+++|++|++++|. +..+| ..+..+++|++|++++|.. ..+|. .+..+++|+.|++..+...
T Consensus 90 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66667777777777776 55554 5566777777777777733 34443 5666777777776665443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-14 Score=145.02 Aligned_cols=164 Identities=23% Similarity=0.226 Sum_probs=80.4
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..++.|.+.++.+..++ .+. .+++|+.|+|++|. +.. ++. +..+++|+.|+|+ +|.+..+| .
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~----~l~~L~~L~Ls~N~---l~~-~~~-l~~l~~L~~L~Ls-------~N~l~~l~-~ 104 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQ----YLPNVTKLFLNGNK---LTD-IKP-LTNLKNLGWLFLD-------ENKIKDLS-S 104 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGG----GCTTCCEEECTTSC---CCC-CGG-GGGCTTCCEEECC-------SSCCCCCT-T
T ss_pred CCCCEEECcCCCCCCCh-HHc----cCCCCCEEEeeCCC---CCC-Chh-hccCCCCCEEECc-------CCCCCCCh-h
Confidence 34445555554444332 122 55555555555555 222 122 5555555555555 55555544 3
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
+..+++|++|+|++|. +..+|. +..+++|+.|+|++|. +..+ ..+..+++|+.|++++|.. ..++. +..+++|+
T Consensus 105 l~~l~~L~~L~Ls~N~-l~~l~~-l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~ 178 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNG-ISDING-LVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQ 178 (605)
T ss_dssp STTCTTCCEEECTTSC-CCCCGG-GGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCC-CCCGG-GTTCTTCC
T ss_pred hccCCCCCEEEecCCC-CCCCcc-ccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcC-CCchh-hccCCCCC
Confidence 5555555555555555 444433 5555555555555555 4444 2355555555555555533 22222 55555555
Q ss_pred ccCcEEEeCccCCccCcccccccccCCCceecC
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRG 274 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~ 274 (510)
.|++..+.... +..+..+++|+.|++.+
T Consensus 179 ~L~Ls~N~i~~-----l~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 179 NLYLSKNHISD-----LRALAGLKNLDVLELFS 206 (605)
T ss_dssp EEECCSSCCCB-----CGGGTTCTTCSEEECCS
T ss_pred EEECcCCCCCC-----ChHHccCCCCCEEEccC
Confidence 55555444332 12344444444444443
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-14 Score=142.48 Aligned_cols=131 Identities=23% Similarity=0.266 Sum_probs=75.4
Q ss_pred ceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccc
Q 010462 83 KILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI 162 (510)
Q Consensus 83 ~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i 162 (510)
+++.|++.++.+..+|..+ +++|+.|++++|. +.. +| ..+++|++|+++ +|.+..+|. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l------~~~L~~L~Ls~N~---l~~-ip---~~l~~L~~L~Ls-------~N~l~~ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL------PPQITVLEITQNA---LIS-LP---ELPASLEYLDAC-------DNRLSTLPE-L 118 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC------CTTCSEEECCSSC---CSC-CC---CCCTTCCEEECC-------SSCCSCCCC-C
T ss_pred CccEEEeCCCCCCccCHhH------cCCCCEEECcCCC---Ccc-cc---cccCCCCEEEcc-------CCCCCCcch-h
Confidence 4666666666655444332 2556666666665 222 33 335666666666 666666665 4
Q ss_pred cccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccc
Q 010462 163 EKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRS 242 (510)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 242 (510)
.+ +|++|++++|. ++.+|. .+++|++|++++|. +..+|. .+++|++|++++|. +..+|. +. ++|+.
T Consensus 119 ~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~ 184 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEA 184 (571)
T ss_dssp CT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCE
T ss_pred hc--CCCEEECCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCE
Confidence 44 66666666666 555665 45666666666666 555655 45666666666663 333555 43 55555
Q ss_pred cCcEEE
Q 010462 243 VRKFVV 248 (510)
Q Consensus 243 L~l~~~ 248 (510)
|++..+
T Consensus 185 L~Ls~N 190 (571)
T 3cvr_A 185 LDVSTN 190 (571)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 555443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=121.71 Aligned_cols=147 Identities=24% Similarity=0.363 Sum_probs=85.3
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..+++|.+.++.+...+... +..+++|++|++++|. +..+.+..|..+++|++|+++ +|.+..+|..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~~ 94 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGV---FDELTSLTQLYLGGNK---LQSLPNGVFNKLTSLTYLNLS-------TNQLQSLPNG 94 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTT---TTTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECC-------SSCCCCCCTT
T ss_pred CCCcEEEcCCCccCcCChhh---hcccccCcEEECCCCc---cCccChhhcCCCCCcCEEECC-------CCcCCccCHh
Confidence 55666666666655433321 2266667777777665 334344445666677777776 6666666433
Q ss_pred -ccccCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCchh-hhccccCceeecCCCcccccccccccCcc
Q 010462 162 -IEKLLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPAGIGELI 238 (510)
Q Consensus 162 -i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 238 (510)
+..+++|++|++++|. ++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|... +.++
T Consensus 95 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~ 165 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCP 165 (208)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-------CCTT
T ss_pred HhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-------cCCC
Confidence 4566677777777666 5555443 5666677777777666 4444443 556667777777666322 2344
Q ss_pred cccccCcEEEeC
Q 010462 239 RLRSVRKFVVGG 250 (510)
Q Consensus 239 ~L~~L~l~~~~~ 250 (510)
+|+.|.++.+..
T Consensus 166 ~l~~L~~~~n~~ 177 (208)
T 2o6s_A 166 GIRYLSEWINKH 177 (208)
T ss_dssp TTHHHHHHHHHC
T ss_pred CHHHHHHHHHhC
Confidence 555555544433
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.3e-14 Score=119.50 Aligned_cols=132 Identities=23% Similarity=0.255 Sum_probs=111.9
Q ss_pred CceeEEEEEeecCC--CccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGA--SVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKK-I 158 (510)
Q Consensus 82 ~~~~~L~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-l 158 (510)
..+++|.+.++.+. .++..+. .+++|+.|++++|. +..+ ..+..+++|++|+++ +|.+.. +
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~----~l~~L~~L~l~~n~---l~~~--~~~~~l~~L~~L~Ls-------~N~l~~~~ 87 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA----EFVNLEFLSLINVG---LISV--SNLPKLPKLKKLELS-------ENRIFGGL 87 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG----GGGGCCEEEEESSC---CCCC--SSCCCCSSCCEEEEE-------SCCCCSCC
T ss_pred ccCCEEECCCCCCChhhHHHHHH----hCCCCCEEeCcCCC---CCCh--hhhccCCCCCEEECc-------CCcCchHH
Confidence 78999999999887 4555544 89999999999998 4442 448899999999999 999888 6
Q ss_pred cccccccCccceEeccCCCCccccc--hhhhcccccceeccCCCCccccCch----hhhccccCceeecCCCcccccccc
Q 010462 159 PTNIEKLLHLKYLSLFGQKKIEKLP--ETLCELYNLERLNVDHCKNLRELPR----GIGKLRKLMYLHNEGTDSLRYLPA 232 (510)
Q Consensus 159 p~~i~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~~~lp~----~~~~l~~L~~L~l~~~~~~~~~p~ 232 (510)
|..+..+++|++|++++|. ++.+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++|. ...+|.
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp CHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred HHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 7777789999999999998 88876 678999999999999998 777776 78899999999999994 455554
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.2e-14 Score=143.48 Aligned_cols=71 Identities=21% Similarity=0.298 Sum_probs=34.3
Q ss_pred ceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccC
Q 010462 137 CLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKL 216 (510)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L 216 (510)
+|++|+++ ++.+..+|..+. ++|++|++++|. ++.+| ..+++|++|++++|. +..+|. +.+ +|
T Consensus 60 ~L~~L~Ls-------~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLN-------RLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECC-------SSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TC
T ss_pred CccEEEeC-------CCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CC
Confidence 45555555 444444544332 445555555554 44444 234455555555554 333444 333 55
Q ss_pred ceeecCCC
Q 010462 217 MYLHNEGT 224 (510)
Q Consensus 217 ~~L~l~~~ 224 (510)
++|++++|
T Consensus 123 ~~L~Ls~N 130 (571)
T 3cvr_A 123 KHLDVDNN 130 (571)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 55555555
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.48 E-value=4.2e-14 Score=117.49 Aligned_cols=125 Identities=24% Similarity=0.236 Sum_probs=81.8
Q ss_pred CCCCccEEEeccCCcCccc-cchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccc-cch
Q 010462 107 GLRGLRSLLVESGEYSWSN-EILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEK-LPE 184 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-lp~ 184 (510)
..++|+.|++++|. +. ..+|..+..+++|++|+++ +|.+..+ ..++.+++|++|++++|. +.. +|.
T Consensus 15 ~~~~l~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~l~-------~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~ 82 (149)
T 2je0_A 15 TPSDVKELVLDNSR---SNEGKLEGLTDEFEELEFLSTI-------NVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEV 82 (149)
T ss_dssp CGGGCSEEECTTCB---CBTTBCCSCCTTCTTCCEEECT-------TSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHH
T ss_pred CCccCeEEEccCCc---CChhHHHHHHhhcCCCcEEECc-------CCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHH
Confidence 34667777777776 32 2245556777777777777 6666666 556677777777777777 444 666
Q ss_pred hhhcccccceeccCCCCccccCc--hhhhccccCceeecCCCcccccccc----cccCcccccccCc
Q 010462 185 TLCELYNLERLNVDHCKNLRELP--RGIGKLRKLMYLHNEGTDSLRYLPA----GIGELIRLRSVRK 245 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~l 245 (510)
.+..+++|++|++++|. +..+| ..+..+++|++|++++|.. ...|. .++.+++|+.|++
T Consensus 83 ~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETT
T ss_pred HhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccC
Confidence 66667777777777777 55543 5677777777777777733 33443 4666666666654
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=121.05 Aligned_cols=146 Identities=25% Similarity=0.296 Sum_probs=113.8
Q ss_pred EEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc-cccc
Q 010462 86 HLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT-NIEK 164 (510)
Q Consensus 86 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~-~i~~ 164 (510)
.+...++....++..+ .++|+.|++++|. +..+.+..|..+++|++|+++ ++.+..+|. .+..
T Consensus 11 ~v~c~~~~l~~~p~~~------~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~~ 74 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI------PAQTTYLDLETNS---LKSLPNGVFDELTSLTQLYLG-------GNKLQSLPNGVFNK 74 (208)
T ss_dssp EEECCSSCCSSCCSCC------CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECC-------SSCCCCCCTTTTTT
T ss_pred EEEecCCCccCCCCCC------CCCCcEEEcCCCc---cCcCChhhhcccccCcEEECC-------CCccCccChhhcCC
Confidence 3445555555555443 4689999999998 455566678999999999999 999988865 4678
Q ss_pred cCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCchh-hhccccCceeecCCCcccccccccccCcccccc
Q 010462 165 LLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRS 242 (510)
Q Consensus 165 l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 242 (510)
+++|++|++++|. +..+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|......+..+..+++|+.
T Consensus 75 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 75 LTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 9999999999999 7777654 6899999999999998 6666654 788999999999999554333344778888888
Q ss_pred cCcEEEe
Q 010462 243 VRKFVVG 249 (510)
Q Consensus 243 L~l~~~~ 249 (510)
|++..+.
T Consensus 153 L~l~~N~ 159 (208)
T 2o6s_A 153 IWLHDNP 159 (208)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 8877653
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.7e-13 Score=119.74 Aligned_cols=130 Identities=27% Similarity=0.351 Sum_probs=112.7
Q ss_pred CceeEEEEEeecCCCc-cccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASV-PIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~ 160 (510)
..++.|.+.++.+... +..+. .+++|+.|++++|. +..+.+..|..+++|++|+++ +|.+..+|.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~L~~N~---l~~i~~~~~~~l~~L~~L~Ls-------~N~l~~l~~ 105 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFD----SLINLKELYLGSNQ---LGALPVGVFDSLTQLTVLDLG-------TNQLTVLPS 105 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECC-------SSCCCCCCT
T ss_pred CCCCEEEcCCCccCccCHHHhh----CccCCcEEECCCCC---CCCcChhhcccCCCcCEEECC-------CCcCCccCh
Confidence 8899999999998864 33344 89999999999998 556566778999999999999 999999865
Q ss_pred -cccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCch-hhhccccCceeecCCCccc
Q 010462 161 -NIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSL 227 (510)
Q Consensus 161 -~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~ 227 (510)
.+..+++|++|++++|. +..+|..+..+++|++|++++|. +..+|. .+..+++|+.|++++|...
T Consensus 106 ~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred hHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 46889999999999999 88999999999999999999998 667764 5888999999999999643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-15 Score=153.93 Aligned_cols=193 Identities=17% Similarity=0.084 Sum_probs=113.2
Q ss_pred hcCCceeEEEeccccccccccccccccccccccCccceEeccCCC-------------Cccccchhhhcccccceec-cC
Q 010462 133 DKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQK-------------KIEKLPETLCELYNLERLN-VD 198 (510)
Q Consensus 133 ~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~-------------~~~~lp~~~~~l~~L~~L~-L~ 198 (510)
..+++|+.|+|+ ++.+..+|..++++.+|+.|++++|. ..+..|..++.+++|+.|+ ++
T Consensus 346 ~~~~~L~~L~Ls-------~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELS-------VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCC-------HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred ccCccceeccCC-------hhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh
Confidence 456777777777 77777777777777777777776553 2445566777788888877 55
Q ss_pred CCCccccCch------hhhc--cccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCc
Q 010462 199 HCKNLRELPR------GIGK--LRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDC 270 (510)
Q Consensus 199 ~~~~~~~lp~------~~~~--l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l 270 (510)
.+. +..++. .+.. ...|+.|++++| .+..+|. ++.+++|+.|++..+.... .+.
T Consensus 419 ~n~-~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~----lp~----------- 480 (567)
T 1dce_A 419 AAY-LDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRA----LPP----------- 480 (567)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCC----CCG-----------
T ss_pred hcc-cchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccc----cch-----------
Confidence 443 333332 1221 125778888887 4455665 7777777777766543321 111
Q ss_pred eecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCC
Q 010462 271 RIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNV 350 (510)
Q Consensus 271 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 350 (510)
.+..+++|+.|++++|... .++ .+..+++|+.|++++|.+..
T Consensus 481 -----------------~~~~l~~L~~L~Ls~N~l~------------------~lp-~l~~l~~L~~L~Ls~N~l~~-- 522 (567)
T 1dce_A 481 -----------------ALAALRCLEVLQASDNALE------------------NVD-GVANLPRLQELLLCNNRLQQ-- 522 (567)
T ss_dssp -----------------GGGGCTTCCEEECCSSCCC------------------CCG-GGTTCSSCCEEECCSSCCCS--
T ss_pred -----------------hhhcCCCCCEEECCCCCCC------------------CCc-ccCCCCCCcEEECCCCCCCC--
Confidence 2233444555555555311 122 45566677777777776665
Q ss_pred C--chhHHhhhhcccceeccCccCCCcCCCC----CCCCccceee
Q 010462 351 V--PISWFMSLTNLRFLFLFGWRNCEHLPPL----GKLPSLEYLE 389 (510)
Q Consensus 351 ~--p~~~~~~l~~L~~L~L~~~~~~~~l~~~----~~l~~L~~L~ 389 (510)
+ | ..+..+++|+.|++++|......|.. ..+|+|+.|+
T Consensus 523 ~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 523 SAAI-QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSTT-GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCc-HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 4 5 56666777777777777544333322 1255666554
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=117.77 Aligned_cols=129 Identities=22% Similarity=0.160 Sum_probs=95.9
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+++|+.|++++|.+ .. ++......++|++|+++ +|.+..+ ..+..+++|++|++++|. +..+|..+
T Consensus 17 ~~~~L~~L~l~~n~l---~~-i~~~~~~~~~L~~L~Ls-------~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~ 83 (176)
T 1a9n_A 17 NAVRDRELDLRGYKI---PV-IENLGATLDQFDAIDFS-------DNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGL 83 (176)
T ss_dssp CTTSCEEEECTTSCC---CS-CCCGGGGTTCCSEEECC-------SSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCH
T ss_pred CcCCceEEEeeCCCC---ch-hHHhhhcCCCCCEEECC-------CCCCCcc-cccccCCCCCEEECCCCc-ccccCcch
Confidence 778888888888873 33 34423333488888888 8887777 567888888888888888 77777544
Q ss_pred -hcccccceeccCCCCccccCch--hhhccccCceeecCCCccccccccc----ccCcccccccCcEEEeC
Q 010462 187 -CELYNLERLNVDHCKNLRELPR--GIGKLRKLMYLHNEGTDSLRYLPAG----IGELIRLRSVRKFVVGG 250 (510)
Q Consensus 187 -~~l~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~l~~~~~ 250 (510)
..+++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|.. ++.+++|+.|++..+..
T Consensus 84 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 84 DQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 788888888888887 677776 678888888888888843 455653 67777888887766543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-13 Score=119.20 Aligned_cols=130 Identities=25% Similarity=0.346 Sum_probs=111.1
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..++.|.+.++.+..++.. .|..+++|+.|++++|. +..+.|..|..+++|++|+|+ +|.+..+|..
T Consensus 32 ~~l~~L~l~~n~i~~i~~~---~~~~l~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls-------~N~l~~l~~~ 98 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPG---AFSPYKKLRRIDLSNNQ---ISELAPDAFQGLRSLNSLVLY-------GNKITELPKS 98 (220)
T ss_dssp TTCCEEECCSSCCCEECTT---SSTTCTTCCEEECCSSC---CCEECTTTTTTCSSCCEEECC-------SSCCCCCCTT
T ss_pred cCCCEEECCCCcCCCcCHh---HhhCCCCCCEEECCCCc---CCCcCHHHhhCCcCCCEEECC-------CCcCCccCHh
Confidence 7899999999988765542 23489999999999998 566578889999999999999 9999999765
Q ss_pred -ccccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccCch-hhhccccCceeecCCCcc
Q 010462 162 -IEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDS 226 (510)
Q Consensus 162 -i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~ 226 (510)
+..+++|++|++++|. +..+ |..+..+++|++|+|++|. +..+|. .+..+++|++|++++|..
T Consensus 99 ~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred HccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 5789999999999999 6665 6679999999999999999 666654 588899999999999954
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-13 Score=132.44 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=84.9
Q ss_pred EEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhh-cCCceeEEEecccccccccccccccc-cccc
Q 010462 86 HLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFD-KLTCLRALKLEVREQGLYTNFIKKIP-TNIE 163 (510)
Q Consensus 86 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~ 163 (510)
.+.+.++.+..+|..+. +.++.|++++|. +..+.+..|. .+++|++|+|+ +|.+..++ ..|.
T Consensus 22 ~l~c~~~~l~~iP~~~~------~~l~~L~Ls~N~---l~~l~~~~~~~~l~~L~~L~L~-------~N~i~~i~~~~~~ 85 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP------SYTALLDLSHNN---LSRLRAEWTPTRLTNLHSLLLS-------HNHLNFISSEAFV 85 (361)
T ss_dssp EEECCSSCCSSCCSSCC------TTCSEEECCSSC---CCEECTTSSSSCCTTCCEEECC-------SSCCCEECTTTTT
T ss_pred EEEeCCCCcCccCccCC------CCCCEEECCCCC---CCccChhhhhhcccccCEEECC-------CCcCCccChhhcc
Confidence 44555555555554432 346667777766 4443444454 66677777776 66666664 4566
Q ss_pred ccCccceEeccCCCCccccch-hhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccc----cCcc
Q 010462 164 KLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGI----GELI 238 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l----~~l~ 238 (510)
++++|++|+|++|. +..+|. .+..+++|++|+|++|......|..+..+++|++|++++| .+..+|..+ ..++
T Consensus 86 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~ 163 (361)
T 2xot_A 86 PVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLP 163 (361)
T ss_dssp TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CT
T ss_pred CCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCC
Confidence 66777777777766 555543 4566677777777776633333555666777777777766 334444432 3455
Q ss_pred cccccCcEEEeC
Q 010462 239 RLRSVRKFVVGG 250 (510)
Q Consensus 239 ~L~~L~l~~~~~ 250 (510)
+|+.|++..+..
T Consensus 164 ~L~~L~L~~N~l 175 (361)
T 2xot_A 164 KLMLLDLSSNKL 175 (361)
T ss_dssp TCCEEECCSSCC
T ss_pred cCCEEECCCCCC
Confidence 666665554433
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-13 Score=113.33 Aligned_cols=124 Identities=27% Similarity=0.293 Sum_probs=105.8
Q ss_pred CceeEEEEEeecCC--CccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGA--SVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKK-I 158 (510)
Q Consensus 82 ~~~~~L~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-l 158 (510)
..+++|.+.++.+. ..+..+. .+++|+.|++++|. +..+ ..+..+++|++|+++ +|.+.. +
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~----~l~~L~~L~l~~n~---l~~~--~~~~~l~~L~~L~Ls-------~n~i~~~~ 80 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTD----EFEELEFLSTINVG---LTSI--ANLPKLNKLKKLELS-------DNRVSGGL 80 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCT----TCTTCCEEECTTSC---CCCC--TTCCCCTTCCEEECC-------SSCCCSCT
T ss_pred ccCeEEEccCCcCChhHHHHHHh----hcCCCcEEECcCCC---CCCc--hhhhcCCCCCEEECC-------CCcccchH
Confidence 77999999999887 4555444 89999999999998 4442 448899999999999 999888 7
Q ss_pred cccccccCccceEeccCCCCccccc--hhhhcccccceeccCCCCccccCch----hhhccccCceeecCC
Q 010462 159 PTNIEKLLHLKYLSLFGQKKIEKLP--ETLCELYNLERLNVDHCKNLRELPR----GIGKLRKLMYLHNEG 223 (510)
Q Consensus 159 p~~i~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~~~lp~----~~~~l~~L~~L~l~~ 223 (510)
|..+..+++|++|++++|. ++.+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 8878889999999999999 78765 779999999999999998 666665 688999999999863
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=144.31 Aligned_cols=156 Identities=21% Similarity=0.161 Sum_probs=82.1
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCc-cccchhHhhhcCCceeEEEeccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSW-SNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~ 160 (510)
..++++.+..+.+...+.... ....|+.+.+....... .-...+..|..++.|++|+|+ +|.+..+|.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l----~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls-------~n~l~~l~~ 241 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALL----QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLS-------NLQIFNISA 241 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECT-------TSCCSCCCG
T ss_pred CccceEEeeCCCCCcchhhHh----hcCccCcccccCccccccceecChhhhccCCCCcEEECC-------CCCCCCCCh
Confidence 557777777766654333332 33333333332211000 001245667777778888887 777777777
Q ss_pred cccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL 240 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 240 (510)
.+.++.+|++|+|++|. +..+|..+++|++|++|+|++|. +..+|..++.+++|++|+|++| .+..+|..++.+++|
T Consensus 242 ~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNL 318 (727)
T ss_dssp GGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTC
T ss_pred hhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCc
Confidence 77777788888888877 66777777778888888888877 5577777777888888888777 445777777777777
Q ss_pred cccCcEEEeCc
Q 010462 241 RSVRKFVVGGG 251 (510)
Q Consensus 241 ~~L~l~~~~~~ 251 (510)
+.|++..+...
T Consensus 319 ~~L~L~~N~l~ 329 (727)
T 4b8c_D 319 QFLGVEGNPLE 329 (727)
T ss_dssp CCEECTTSCCC
T ss_pred cEEeCCCCccC
Confidence 77777666554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.7e-13 Score=118.35 Aligned_cols=133 Identities=17% Similarity=0.150 Sum_probs=111.4
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-c
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-T 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~ 160 (510)
..++.|.+.++.+...+.. ..+..+++|+.|++++|. +..+.+..|..+++|++|+++ +|.+..++ .
T Consensus 32 ~~~~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~ 99 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEAT--GIFKKLPQLRKINFSNNK---ITDIEEGAFEGASGVNEILLT-------SNRLENVQHK 99 (220)
T ss_dssp TTCSEEECCSSCCCEECCC--CCGGGCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SSCCCCCCGG
T ss_pred CCCCEEEcCCCcCCccCch--hhhccCCCCCEEECCCCc---CCEECHHHhCCCCCCCEEECC-------CCccCccCHh
Confidence 6788999999988765321 113489999999999998 556567679999999999999 99998885 4
Q ss_pred cccccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccc
Q 010462 161 NIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSL 227 (510)
Q Consensus 161 ~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 227 (510)
.+..+++|++|++++|. +..+ |..+..+++|++|+|++|......|..+..+++|++|++++|...
T Consensus 100 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp GGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred HhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 58899999999999999 6665 778999999999999999944444788999999999999999653
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.3e-13 Score=128.91 Aligned_cols=151 Identities=21% Similarity=0.278 Sum_probs=120.5
Q ss_pred CceeEEEEEeecCCCcccccccccc-CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVK-GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~ 160 (510)
..++.|++.++.+...+... +. .+++|+.|++++|. +..+.+..|..+++|++|+|+ +|.+..++.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~---~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls-------~N~l~~~~~ 105 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEW---TPTRLTNLHSLLLSHNH---LNFISSEAFVPVPNLRYLDLS-------SNHLHTLDE 105 (361)
T ss_dssp TTCSEEECCSSCCCEECTTS---SSSCCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SSCCCEECT
T ss_pred CCCCEEECCCCCCCccChhh---hhhcccccCEEECCCCc---CCccChhhccCCCCCCEEECC-------CCcCCcCCH
Confidence 67899999999887655433 33 78999999999998 566566779999999999999 999998854
Q ss_pred -cccccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccCchhh----hccccCceeecCCCccccccc-cc
Q 010462 161 -NIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELPRGI----GKLRKLMYLHNEGTDSLRYLP-AG 233 (510)
Q Consensus 161 -~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~~----~~l~~L~~L~l~~~~~~~~~p-~~ 233 (510)
.|..+.+|++|+|++|. +..+ |..+..+++|+.|+|++|. +..+|..+ ..+++|++|++++|.. ..+| ..
T Consensus 106 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~ 182 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLPLTD 182 (361)
T ss_dssp TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCC-CCCCHHH
T ss_pred HHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCC-CccCHHH
Confidence 68889999999999999 6665 6789999999999999998 88888775 5799999999999954 4555 34
Q ss_pred ccCcccc--cccCcEEE
Q 010462 234 IGELIRL--RSVRKFVV 248 (510)
Q Consensus 234 l~~l~~L--~~L~l~~~ 248 (510)
+..++.+ +.|++..+
T Consensus 183 ~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp HHHSCHHHHTTEECCSS
T ss_pred hhhccHhhcceEEecCC
Confidence 5555543 55555443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.2e-14 Score=145.38 Aligned_cols=119 Identities=21% Similarity=0.248 Sum_probs=104.7
Q ss_pred ccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccch
Q 010462 105 VKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPE 184 (510)
Q Consensus 105 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~ 184 (510)
+..++.|+.|+|++|. +.. +|..+..+++|++|+|+ +|.+..+|..|+++++|++|+|++|. +..+|.
T Consensus 220 ~~~l~~L~~L~Ls~n~---l~~-l~~~~~~l~~L~~L~Ls-------~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~ 287 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ---IFN-ISANIFKYDFLTRLYLN-------GNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPA 287 (727)
T ss_dssp --CCCCCCEEECTTSC---CSC-CCGGGGGCCSCSCCBCT-------TSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCS
T ss_pred hccCCCCcEEECCCCC---CCC-CChhhcCCCCCCEEEee-------CCcCcccChhhhCCCCCCEEeCcCCc-CCccCh
Confidence 4489999999999998 444 45446699999999999 99999999999999999999999999 889999
Q ss_pred hhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccC
Q 010462 185 TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGE 236 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 236 (510)
.+++|++|++|+|++|. +..+|..|+.+++|++|+|++|.....+|..+..
T Consensus 288 ~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp SGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred hhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 99999999999999998 7899999999999999999999776666665544
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.38 E-value=7.1e-13 Score=113.36 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=107.6
Q ss_pred CceeEEEEEeecCCCccccccccccCC-CCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGL-RGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT 160 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~ 160 (510)
..++.|.+.++.+..++. +. .+ ++|+.|++++|.+ ..+ ..|..+++|++|+++ +|.+..+|.
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~----~~~~~L~~L~Ls~N~l---~~~--~~l~~l~~L~~L~Ls-------~N~l~~~~~ 81 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LG----ATLDQFDAIDFSDNEI---RKL--DGFPLLRRLKTLLVN-------NNRICRIGE 81 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GG----GGTTCCSEEECCSSCC---CEE--CCCCCCSSCCEEECC-------SSCCCEECS
T ss_pred CCceEEEeeCCCCchhHH-hh----hcCCCCCEEECCCCCC---Ccc--cccccCCCCCEEECC-------CCcccccCc
Confidence 779999999998886543 32 44 4999999999984 442 348899999999999 999999976
Q ss_pred cc-cccCccceEeccCCCCccccch--hhhcccccceeccCCCCccccCchh----hhccccCceeecCCCcc
Q 010462 161 NI-EKLLHLKYLSLFGQKKIEKLPE--TLCELYNLERLNVDHCKNLRELPRG----IGKLRKLMYLHNEGTDS 226 (510)
Q Consensus 161 ~i-~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~~----~~~l~~L~~L~l~~~~~ 226 (510)
.+ ..+++|++|++++|. ++.+|. .+..+++|++|++++|. +..+|.. +..+++|++|++++|..
T Consensus 82 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55 889999999999999 888887 78999999999999999 7788875 89999999999998853
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=112.74 Aligned_cols=126 Identities=24% Similarity=0.248 Sum_probs=95.6
Q ss_pred eEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhH-hhhcCCceeEEEeccccccccccccccc-cccc
Q 010462 85 LHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQ-LFDKLTCLRALKLEVREQGLYTNFIKKI-PTNI 162 (510)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i 162 (510)
+.+++.++.+..+|..+. ++++.|++++|. +..+.+. .|..+++|++|+++ +|.+..+ |..+
T Consensus 11 ~~l~~s~~~l~~ip~~~~------~~l~~L~l~~n~---i~~~~~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~~~ 74 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP------LHTTELLLNDNE---LGRISSDGLFGRLPHLVKLELK-------RNQLTGIEPNAF 74 (192)
T ss_dssp TEEECTTSCCSSCCSCCC------TTCSEEECCSCC---CCSBCCSCSGGGCTTCCEEECC-------SSCCCCBCTTTT
T ss_pred CEEEcCCCCcCcCccCCC------CCCCEEECCCCc---CCccCCccccccCCCCCEEECC-------CCCCCCcCHhHc
Confidence 456677777766666543 388888998887 4443332 47888889999998 8888777 6778
Q ss_pred cccCccceEeccCCCCccccc-hhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccc
Q 010462 163 EKLLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSL 227 (510)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 227 (510)
.++++|++|++++|. ++.++ ..+.++++|++|++++|......|..+..+++|++|++++|...
T Consensus 75 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 75 EGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 888899999999888 55554 45788888999999988855556777888888999998888543
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-12 Score=110.59 Aligned_cols=122 Identities=18% Similarity=0.234 Sum_probs=91.5
Q ss_pred EEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccc
Q 010462 86 HLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEK 164 (510)
Q Consensus 86 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~ 164 (510)
.+.+.++.+..+|..+. ++|+.|++++|. +.. +|..|..+++|++|+++ +|.+..++ ..|.+
T Consensus 14 ~l~~~~~~l~~ip~~~~------~~l~~L~L~~n~---i~~-ip~~~~~l~~L~~L~Ls-------~N~i~~i~~~~f~~ 76 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP------RDVTELYLDGNQ---FTL-VPKELSNYKHLTLIDLS-------NNRISTLSNQSFSN 76 (193)
T ss_dssp EEECTTSCCSSCCSCCC------TTCCEEECCSSC---CCS-CCGGGGGCTTCCEEECC-------SSCCCCCCTTTTTT
T ss_pred EEEcCCCCCCcCCCCCC------CCCCEEECCCCc---Cch-hHHHhhcccCCCEEECC-------CCcCCEeCHhHccC
Confidence 45566666666665442 578888888887 444 45668888888888888 88888874 56788
Q ss_pred cCccceEeccCCCCccccc-hhhhcccccceeccCCCCccccCchh-hhccccCceeecCCCcc
Q 010462 165 LLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDS 226 (510)
Q Consensus 165 l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 226 (510)
+++|++|++++|. +..+| ..+..+++|++|+|++|. +..+|.. +..+++|++|++++|..
T Consensus 77 l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 77 MTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 8888888888888 66655 468888888888888888 6666654 67788888888888754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-12 Score=129.99 Aligned_cols=156 Identities=17% Similarity=0.106 Sum_probs=111.8
Q ss_pred ccCCCCccEEE-eccCCcCccccc--hhHhhhc--CCceeEEEeccccccccccccccccccccccCccceEeccCCCCc
Q 010462 105 VKGLRGLRSLL-VESGEYSWSNEI--LPQLFDK--LTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKI 179 (510)
Q Consensus 105 ~~~~~~L~~L~-l~~~~~~~~~~~--~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 179 (510)
+..+++|+.|+ +..|.+...... ....+.. ...|++|+++ +|.+..+|. ++.+++|++|++++|. +
T Consensus 405 l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls-------~n~l~~lp~-~~~l~~L~~L~Ls~N~-l 475 (567)
T 1dce_A 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA-------HKDLTVLCH-LEQLLLVTHLDLSHNR-L 475 (567)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECT-------TSCCSSCCC-GGGGTTCCEEECCSSC-C
T ss_pred HHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEec-------CCCCCCCcC-ccccccCcEeecCccc-c
Confidence 44778888887 555542111100 0000111 1358999999 888888987 8999999999999998 7
Q ss_pred cccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccc-cccccCcccccccCcEEEeCccCCccCc
Q 010462 180 EKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYL-PAGIGELIRLRSVRKFVVGGGYDRACSL 258 (510)
Q Consensus 180 ~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~~~ 258 (510)
+.+|..++.+++|++|+|++|. +..+| .++++++|++|++++|...... |..++.+++|+.|++.++..........
T Consensus 476 ~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 476 RALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp CCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred cccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 8999999999999999999998 77788 7999999999999999554443 8889999999999988877664222222
Q ss_pred ccccccccCCCce
Q 010462 259 GSLKKLNLLRDCR 271 (510)
Q Consensus 259 ~~l~~l~~L~~l~ 271 (510)
..+..+++|+.|+
T Consensus 554 ~l~~~lp~L~~L~ 566 (567)
T 1dce_A 554 RLAEMLPSVSSIL 566 (567)
T ss_dssp HHHHHCTTCSEEE
T ss_pred HHHHHCcccCccC
Confidence 2233456666553
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=117.31 Aligned_cols=290 Identities=11% Similarity=0.091 Sum_probs=161.0
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhc-CCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccc-h
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDK-LTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLP-E 184 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~ 184 (510)
.+.+++.|.+.++- ....-..+.. +++|++|||+ ++.+......-+.++.++++.+..+. +| .
T Consensus 23 ~~~~l~~L~l~g~i----~~~~~~~l~~~l~~L~~LdLs-------~n~i~~~~~~~~~~~~~~~~~~~~~~----I~~~ 87 (329)
T 3sb4_A 23 EANSITHLTLTGKL----NAEDFRHLRDEFPSLKVLDIS-------NAEIKMYSGKAGTYPNGKFYIYMANF----VPAY 87 (329)
T ss_dssp HHHHCSEEEEEEEE----CHHHHHHHHHSCTTCCEEEEE-------EEEECCEEESSSSSGGGCCEEECTTE----ECTT
T ss_pred hhCceeEEEEeccc----cHHHHHHHHHhhccCeEEecC-------cceeEEecCccccccccccccccccc----cCHH
Confidence 35677888887752 1111122444 7888899998 77776221111223334555555442 33 3
Q ss_pred hhhc--------ccccceeccCCCCccccCch-hhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCc
Q 010462 185 TLCE--------LYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRA 255 (510)
Q Consensus 185 ~~~~--------l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~ 255 (510)
.|.+ +++|+.|++.+ . +..++. .|..+++|+.+++.+|......+..+..+.++..+......
T Consensus 88 aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~------ 159 (329)
T 3sb4_A 88 AFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSD------ 159 (329)
T ss_dssp TTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTH------
T ss_pred HhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchh------
Confidence 4556 88888888887 4 555554 47788888888888874433333445444444333221100
Q ss_pred cCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCC-eEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCC
Q 010462 256 CSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLL-KLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPP 334 (510)
Q Consensus 256 ~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 334 (510)
.......+.. ..+..+..|+ .+.+.... .........-..+.
T Consensus 160 ----~~~~~~~i~~-----------------~~f~~~~~L~~~i~~~~~~----------------~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 160 ----AYRFKNRWEH-----------------FAFIEGEPLETTIQVGAMG----------------KLEDEIMKAGLQPR 202 (329)
T ss_dssp ----HHHTSTTTTT-----------------SCEEESCCCEEEEEECTTC----------------CHHHHHHHTTCCGG
T ss_pred ----hhhccccccc-----------------cccccccccceeEEecCCC----------------cHHHHHhhcccCcc
Confidence 0000000000 1122223333 22222111 01222222233455
Q ss_pred CccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CCCCCccceeeccCccccEEecccccCCCCCCCC
Q 010462 335 NLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDG 412 (510)
Q Consensus 335 ~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 412 (510)
++..+.+.+.-...+ +. .....+++|+.|+|.+|. +..++. +..+++|+.|+|.++ ++.++...+
T Consensus 203 ~~~~l~~~~~l~~~~-~~-~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF-------- 269 (329)
T 3sb4_A 203 DINFLTIEGKLDNAD-FK-LIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVF-------- 269 (329)
T ss_dssp GCSEEEEEECCCHHH-HH-HHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTT--------
T ss_pred ccceEEEeeeecHHH-HH-HHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHh--------
Confidence 677777776533220 11 122257889999998874 455554 888889999999875 777766543
Q ss_pred Cccccccccc-cccccccccccccccccccccccccCcccceeeeccCcccccCCc-ccCCCCCCcEEEE
Q 010462 413 SSVIAFPKLK-HLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPD-HLLQKTTLQKLHI 480 (510)
Q Consensus 413 ~~~~~~~~L~-~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l 480 (510)
.++++|+ .+.+.+ .++.+ .+.+|..+++|+.|++.++ .++.++. .+.++++|+.|+.
T Consensus 270 ---~~~~~L~~~l~l~~--~l~~I-----~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 270 ---SNCGRLAGTLELPA--SVTAI-----EFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ---TTCTTCCEEEEECT--TCCEE-----CTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred ---hCChhccEEEEEcc--cceEE-----chhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 3677888 887766 34433 3455678899999999777 4566655 6778889988863
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-12 Score=111.98 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=100.8
Q ss_pred cEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc--ccccCccceEeccCCCCcccc-chhhhc
Q 010462 112 RSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN--IEKLLHLKYLSLFGQKKIEKL-PETLCE 188 (510)
Q Consensus 112 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~~l-p~~~~~ 188 (510)
++++++++. +.. +|..+. .+|++|+++ ++.+..++.. +..+++|++|++++|. ++.+ |..+.+
T Consensus 11 ~~l~~s~~~---l~~-ip~~~~--~~l~~L~l~-------~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRG---LKE-IPRDIP--LHTTELLLN-------DNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSC---CSS-CCSCCC--TTCSEEECC-------SCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTT
T ss_pred CEEEcCCCC---cCc-CccCCC--CCCCEEECC-------CCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCC
Confidence 688999887 444 343232 389999999 9999888653 8899999999999999 5555 778999
Q ss_pred ccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCc
Q 010462 189 LYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGG 251 (510)
Q Consensus 189 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 251 (510)
+++|++|++++|......|..+..+++|++|++++|......|..++.+++|+.|++..+...
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999999999999944444555889999999999999766666888888999999887766543
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.31 E-value=8.2e-14 Score=121.75 Aligned_cols=110 Identities=23% Similarity=0.231 Sum_probs=80.2
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+++|+.|++++|. +.. +| .+..+++|++|+++ +|.+..+|..+..+++|++|++++|. +..+| .+
T Consensus 46 ~l~~L~~L~ls~n~---l~~-l~-~~~~l~~L~~L~l~-------~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~ 111 (198)
T 1ds9_A 46 TLKACKHLALSTNN---IEK-IS-SLSGMENLRILSLG-------RNLIKKIENLDAVADTLEELWISYNQ-IASLS-GI 111 (198)
T ss_dssp HTTTCSEEECSEEE---ESC-CC-CHHHHTTCCEEEEE-------EEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HH
T ss_pred cCCCCCEEECCCCC---Ccc-cc-ccccCCCCCEEECC-------CCCcccccchhhcCCcCCEEECcCCc-CCcCC-cc
Confidence 77888888888876 333 44 47777888888888 77777777777777788888888887 67776 47
Q ss_pred hcccccceeccCCCCccccCch--hhhccccCceeecCCCccccccc
Q 010462 187 CELYNLERLNVDHCKNLRELPR--GIGKLRKLMYLHNEGTDSLRYLP 231 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p 231 (510)
..+++|++|++++|. +..+|. .+..+++|++|++++|......|
T Consensus 112 ~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 778888888888877 555543 57778888888888875433333
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=105.63 Aligned_cols=125 Identities=28% Similarity=0.369 Sum_probs=96.5
Q ss_pred eEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc-ccc
Q 010462 85 LHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT-NIE 163 (510)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~-~i~ 163 (510)
+.+.+.++.+..+|..+ .++|+.|++++|. +..+.+..|..+++|++|+++ +|.+..+|. .+.
T Consensus 10 ~~l~~~~~~l~~~p~~~------~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~ 73 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI------PSSATRLELESNK---LQSLPHGVFDKLTQLTKLSLS-------QNQIQSLPDGVFD 73 (177)
T ss_dssp TEEECCSSCCSSCCTTC------CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECC-------SSCCCCCCTTTTT
T ss_pred CEEEecCCCCccCCCCC------CCCCcEEEeCCCc---ccEeCHHHhcCcccccEEECC-------CCcceEeChhHcc
Confidence 34566666666555433 4689999999987 445456667889999999999 888888865 467
Q ss_pred ccCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCchh-hhccccCceeecCCCccc
Q 010462 164 KLLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSL 227 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~ 227 (510)
.+++|++|++++|. ++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|...
T Consensus 74 ~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 74 KLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 89999999999998 6776654 6789999999999998 6677765 467899999999998543
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.6e-12 Score=108.47 Aligned_cols=123 Identities=20% Similarity=0.280 Sum_probs=97.1
Q ss_pred cEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccc-hhhhccc
Q 010462 112 RSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLP-ETLCELY 190 (510)
Q Consensus 112 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~ 190 (510)
++++++++. +.. +|..+ .++|++|+++ ++.+..+|..+.++++|++|++++|. ++.++ ..|.+++
T Consensus 13 ~~l~~~~~~---l~~-ip~~~--~~~l~~L~L~-------~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSNKG---LKV-LPKGI--PRDVTELYLD-------GNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMT 78 (193)
T ss_dssp TEEECTTSC---CSS-CCSCC--CTTCCEEECC-------SSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CEEEcCCCC---CCc-CCCCC--CCCCCEEECC-------CCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCC
Confidence 567888887 444 33323 2589999999 99999999999999999999999999 66665 5689999
Q ss_pred ccceeccCCCCccccCc-hhhhccccCceeecCCCcccccccc-cccCcccccccCcEEEeC
Q 010462 191 NLERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGTDSLRYLPA-GIGELIRLRSVRKFVVGG 250 (510)
Q Consensus 191 ~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~ 250 (510)
+|++|+|++|. +..+| ..+..+++|++|++++|.. ..+|. .+..+++|+.|++..+..
T Consensus 79 ~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 79 QLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCCCe
Confidence 99999999999 55554 5688999999999999954 45554 577888888887765543
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-14 Score=124.39 Aligned_cols=111 Identities=23% Similarity=0.220 Sum_probs=91.0
Q ss_pred hhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCc
Q 010462 128 LPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELP 207 (510)
Q Consensus 128 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp 207 (510)
+|..|..+++|++|+++ +|.+..+| .+..+++|++|++++|. ++.+|..+..+++|++|++++|. +..+|
T Consensus 40 l~~~~~~l~~L~~L~ls-------~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~ 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALS-------TNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS 109 (198)
T ss_dssp CHHHHHHTTTCSEEECS-------EEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH
T ss_pred hhHHHhcCCCCCEEECC-------CCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC
Confidence 45578999999999999 88888888 88889999999999998 88899888888999999999998 67777
Q ss_pred hhhhccccCceeecCCCccccccc--ccccCcccccccCcEEEeC
Q 010462 208 RGIGKLRKLMYLHNEGTDSLRYLP--AGIGELIRLRSVRKFVVGG 250 (510)
Q Consensus 208 ~~~~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~ 250 (510)
.+..+++|++|++++|. +..++ ..+..+++|+.|++..+..
T Consensus 110 -~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp -HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred -ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 58899999999999984 34433 3567777788777765543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-11 Score=116.00 Aligned_cols=266 Identities=11% Similarity=0.044 Sum_probs=144.0
Q ss_pred CCceeEEEeccccccccccccccccccccc-cCccceEeccCCCCccccchhhhcccccceeccCCCCccccCc-hhhhc
Q 010462 135 LTCLRALKLEVREQGLYTNFIKKIPTNIEK-LLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELP-RGIGK 212 (510)
Q Consensus 135 l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~-l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~ 212 (510)
+.+++.|.++ +.--..-...+.. +++|++|+|++|. +......-+.++.++.+.+..+. +| ..|.+
T Consensus 24 ~~~l~~L~l~-------g~i~~~~~~~l~~~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~~----I~~~aF~~ 91 (329)
T 3sb4_A 24 ANSITHLTLT-------GKLNAEDFRHLRDEFPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMANF----VPAYAFSN 91 (329)
T ss_dssp HHHCSEEEEE-------EEECHHHHHHHHHSCTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTTE----ECTTTTEE
T ss_pred hCceeEEEEe-------ccccHHHHHHHHHhhccCeEEecCcce-eEEecCccccccccccccccccc----cCHHHhcc
Confidence 5577888887 4321110122333 7889999999988 55221111222334444444442 33 23556
Q ss_pred --------cccCceeecCCCccccccc-ccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhh
Q 010462 213 --------LRKLMYLHNEGTDSLRYLP-AGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGE 283 (510)
Q Consensus 213 --------l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~ 283 (510)
+++|+.|++.+ .+..++ ..+..+++|+.+.+..+........
T Consensus 92 ~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~--------------------------- 142 (329)
T 3sb4_A 92 VVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPE--------------------------- 142 (329)
T ss_dssp EETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTT---------------------------
T ss_pred cccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchh---------------------------
Confidence 89999999987 234444 4577888888887765433221111
Q ss_pred hhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCcc-EEEEeecCCccCCCchhHHh---hh
Q 010462 284 ARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLK-KLRIDEYRGRRNVVPISWFM---SL 359 (510)
Q Consensus 284 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~p~~~~~---~l 359 (510)
.|..+.++..+...... .... ........+..+..|+ .+.+..... ++...+. ..
T Consensus 143 ----aF~~~~~l~~l~~~~~~------~~~~-------~~~i~~~~f~~~~~L~~~i~~~~~~~----l~~~~~~~~~~~ 201 (329)
T 3sb4_A 143 ----ALADSVTAIFIPLGSSD------AYRF-------KNRWEHFAFIEGEPLETTIQVGAMGK----LEDEIMKAGLQP 201 (329)
T ss_dssp ----SSCTTTCEEEECTTCTH------HHHT-------STTTTTSCEEESCCCEEEEEECTTCC----HHHHHHHTTCCG
T ss_pred ----hhcCCCceEEecCcchh------hhhc-------cccccccccccccccceeEEecCCCc----HHHHHhhcccCc
Confidence 11111222211111100 0000 0000011122344555 444443222 3312222 35
Q ss_pred hcccceeccCccCCCcCCCC-CCCCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccc
Q 010462 360 TNLRFLFLFGWRNCEHLPPL-GKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFE 438 (510)
Q Consensus 360 ~~L~~L~L~~~~~~~~l~~~-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 438 (510)
.++..+.+.+.-.......+ ..+++|+.|+|.++. ++.++...+ .++++|++|++.+. ++.+
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF-----------~~~~~L~~l~l~~n--i~~I--- 264 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTF-----------AQKKYLLKIKLPHN--LKTI--- 264 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTT-----------TTCTTCCEEECCTT--CCEE---
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhh-----------hCCCCCCEEECCcc--ccee---
Confidence 66777777654211111111 237899999999876 778876544 37889999998773 4443
Q ss_pred cccccccccCcccc-eeeeccCcccccCC-cccCCCCCCcEEEEcCC
Q 010462 439 TAIKREIIIMPRLS-SLTIWSCRKLKALP-DHLLQKTTLQKLHIRRC 483 (510)
Q Consensus 439 ~~~~~~~~~l~~L~-~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c 483 (510)
.+.+|..+++|+ .+.+.+ .++.++ ..+..+++|+.|++.++
T Consensus 265 --~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 265 --GQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp --CTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred --hHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence 345567899999 999987 466665 46788999999999765
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=99.26 Aligned_cols=125 Identities=26% Similarity=0.342 Sum_probs=97.0
Q ss_pred ccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccc-cccccCccceEeccCCCCccccchh-hhc
Q 010462 111 LRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPT-NIEKLLHLKYLSLFGQKKIEKLPET-LCE 188 (510)
Q Consensus 111 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~-~~~ 188 (510)
.+.+++.++. +.. +|.. ..++|++|+++ ++.+..+|. .+..+++|++|++++|. ++.+|.. +..
T Consensus 9 ~~~l~~~~~~---l~~-~p~~--~~~~l~~L~l~-------~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 74 (177)
T 2o6r_A 9 GTEIRCNSKG---LTS-VPTG--IPSSATRLELE-------SNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDK 74 (177)
T ss_dssp TTEEECCSSC---CSS-CCTT--CCTTCSEEECC-------SSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT
T ss_pred CCEEEecCCC---Ccc-CCCC--CCCCCcEEEeC-------CCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccC
Confidence 4678888876 444 3322 23689999999 888888865 46889999999999998 7777654 689
Q ss_pred ccccceeccCCCCccccCchh-hhccccCceeecCCCccccccccc-ccCcccccccCcEEEeCc
Q 010462 189 LYNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTDSLRYLPAG-IGELIRLRSVRKFVVGGG 251 (510)
Q Consensus 189 l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~ 251 (510)
+++|++|++++|. +..+|.. +..+++|++|++++|.. ..+|.. +..+++|+.|++..+...
T Consensus 75 l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 75 LTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCCee
Confidence 9999999999998 6666654 68899999999999954 556654 577888998888766443
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.3e-11 Score=100.30 Aligned_cols=99 Identities=22% Similarity=0.335 Sum_probs=64.7
Q ss_pred cEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccccccCccceEeccCCCCccccchh-hhcc
Q 010462 112 RSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKLLHLKYLSLFGQKKIEKLPET-LCEL 189 (510)
Q Consensus 112 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l 189 (510)
+.++++++. +.. +|..+ .++|++|+++ +|.+..+ |..|.++++|++|+|++|. +..+|.. +.++
T Consensus 15 ~~l~~~~n~---l~~-iP~~~--~~~L~~L~Ls-------~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIR---LAS-VPAGI--PTDKQRLWLN-------NNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSC---CSS-CCSCC--CTTCSEEECC-------SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred cEEEeCCCC---CCc-cCCCc--CCCCcEEEeC-------CCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCc
Confidence 556666665 333 33322 2667777777 7777666 4566677777777777776 6666654 4667
Q ss_pred cccceeccCCCCccccCchh-hhccccCceeecCCCc
Q 010462 190 YNLERLNVDHCKNLRELPRG-IGKLRKLMYLHNEGTD 225 (510)
Q Consensus 190 ~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 225 (510)
++|++|+|++|. +..+|.. +..+++|++|++++|.
T Consensus 81 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 81 TQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred chhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC
Confidence 777777777776 5566654 6677777777777773
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=99.09 Aligned_cols=110 Identities=25% Similarity=0.299 Sum_probs=91.5
Q ss_pred eEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc-cc
Q 010462 85 LHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN-IE 163 (510)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~-i~ 163 (510)
+.+.+.++.+..+|..+ .++|+.|++++|. +..+.|..|..+++|++|+|+ +|.+..+|.. +.
T Consensus 15 ~~l~~~~n~l~~iP~~~------~~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls-------~N~l~~i~~~~~~ 78 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI------PTDKQRLWLNNNQ---ITKLEPGVFDHLVNLQQLYFN-------SNKLTAIPTGVFD 78 (174)
T ss_dssp SEEECCSSCCSSCCSCC------CTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECC-------SSCCCCCCTTTTT
T ss_pred cEEEeCCCCCCccCCCc------CCCCcEEEeCCCC---ccccCHHHhcCCcCCCEEECC-------CCCCCccChhHhC
Confidence 46777777777677654 3899999999998 666568889999999999999 9999999765 57
Q ss_pred ccCccceEeccCCCCccccchh-hhcccccceeccCCCCccccCchhhhc
Q 010462 164 KLLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCKNLRELPRGIGK 212 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~ 212 (510)
++++|++|++++|. ++.+|.. +..+++|++|++++|. +...|..+..
T Consensus 79 ~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~~~ 126 (174)
T 2r9u_A 79 KLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP-WDCECRDIMY 126 (174)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-BCTTBGGGHH
T ss_pred CcchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC-cccccccHHH
Confidence 89999999999999 8888875 8899999999999998 6655554443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-10 Score=96.40 Aligned_cols=99 Identities=22% Similarity=0.332 Sum_probs=61.2
Q ss_pred cEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccccccCccceEeccCCCCccccchh-hhcc
Q 010462 112 RSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKLLHLKYLSLFGQKKIEKLPET-LCEL 189 (510)
Q Consensus 112 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l 189 (510)
+.+++++|. +.. +|..+ .++|++|+++ +|.+..+ |..|.++++|++|++++|. +..+|.. +.++
T Consensus 12 ~~l~~s~n~---l~~-ip~~~--~~~l~~L~L~-------~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l 77 (170)
T 3g39_A 12 TTVDCSGKS---LAS-VPTGI--PTTTQVLYLY-------DNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKL 77 (170)
T ss_dssp TEEECTTSC---CSS-CCSCC--CTTCSEEECC-------SSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTC
T ss_pred CEEEeCCCC---cCc-cCccC--CCCCcEEEcC-------CCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCC
Confidence 556666665 333 23222 2566777777 6666666 4556667777777777776 5555543 4667
Q ss_pred cccceeccCCCCccccCch-hhhccccCceeecCCCc
Q 010462 190 YNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTD 225 (510)
Q Consensus 190 ~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 225 (510)
++|++|+|++|. +..+|. .+..+++|++|++++|.
T Consensus 78 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 78 TQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 777777777776 555554 36667777777777764
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-09 Score=104.02 Aligned_cols=305 Identities=15% Similarity=0.086 Sum_probs=160.8
Q ss_pred cccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCcccc
Q 010462 104 NVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKL 182 (510)
Q Consensus 104 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l 182 (510)
+|.+|.+|+.+.+..+ +..+-..+|..|.+|+.+++. ++ +..++ ..|.++..|+.+.+..+ +..+
T Consensus 66 AF~~c~~L~~i~lp~~----i~~I~~~aF~~c~~L~~i~lp-------~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i 131 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST----VREIGEFAFENCSKLEIINIP-------DS-VKMIGRCTFSGCYALKSILLPLM--LKSI 131 (394)
T ss_dssp TTTTCTTEEEEECCTT----CCEECTTTTTTCTTCCEECCC-------TT-CCEECTTTTTTCTTCCCCCCCTT--CCEE
T ss_pred HhhCCCCceEEEeCCC----ccCcchhHhhCCCCCcEEEeC-------CC-ceEccchhhcccccchhhcccCc--eeee
Confidence 3458899999999754 555556779999999999996 43 55553 45777888888777654 3333
Q ss_pred c-hhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccccccc-ccccCcccccccCcEEEeCccCCccCccc
Q 010462 183 P-ETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLP-AGIGELIRLRSVRKFVVGGGYDRACSLGS 260 (510)
Q Consensus 183 p-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 260 (510)
+ .++.++..++.........+ -...+..+++|+.+.+.++ . ..++ ..+..+.+|+.+.+... .. ......
T Consensus 132 ~~~aF~~~~~~~~~~~~~~~~i--~~~aF~~c~~L~~i~l~~~-~-~~I~~~~F~~c~~L~~i~l~~~-~~---~I~~~~ 203 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGVTVI--GDEAFATCESLEYVSLPDS-M-ETLHNGLFSGCGKLKSIKLPRN-LK---IIRDYC 203 (394)
T ss_dssp CTTTTTTCCCSEEECCTTCCEE--CTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCBCCCCTT-CC---EECTTT
T ss_pred cceeeecccccccccCcccccc--chhhhcccCCCcEEecCCc-c-ceeccccccCCCCceEEEcCCC-ce---EeCchh
Confidence 3 33444444443333332211 1234667777777777654 1 2232 34556666776654321 00 001112
Q ss_pred ccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEE
Q 010462 261 LKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLR 340 (510)
Q Consensus 261 l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 340 (510)
+..+..|+.+.+..- .. ...........|+.+.+.... .......+..+..++.+.
T Consensus 204 F~~~~~L~~i~~~~~--~~----~i~~~~~~~~~l~~i~ip~~~------------------~~i~~~~f~~~~~l~~~~ 259 (394)
T 4fs7_A 204 FAECILLENMEFPNS--LY----YLGDFALSKTGVKNIIIPDSF------------------TELGKSVFYGCTDLESIS 259 (394)
T ss_dssp TTTCTTCCBCCCCTT--CC----EECTTTTTTCCCCEEEECTTC------------------CEECSSTTTTCSSCCEEE
T ss_pred hccccccceeecCCC--ce----EeehhhcccCCCceEEECCCc------------------eecccccccccccceeEE
Confidence 223333333332210 00 000112233566666654321 001112344566777777
Q ss_pred EeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CCCCCccceeeccCccccEEecccccCCCCCCCCCccccc
Q 010462 341 IDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAF 418 (510)
Q Consensus 341 l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 418 (510)
+..+... ++...+..+..++.+...... ++. +..+.+|+.+.+... ++.++... +..+
T Consensus 260 ~~~~~~~---i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~--i~~I~~~a-----------F~~c 319 (394)
T 4fs7_A 260 IQNNKLR---IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS--VKFIGEEA-----------FESC 319 (394)
T ss_dssp ECCTTCE---ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT--CCEECTTT-----------TTTC
T ss_pred cCCCcce---eeccccccccccceeccCcee----eccccccccccccccccccc--cceechhh-----------hcCC
Confidence 7654322 222445566666666554432 222 556777777777542 55554433 2356
Q ss_pred cccccccccccccccccccccccccccccCcccceeeeccCcccccCCc-ccCCCCCCcEEEEcCC
Q 010462 419 PKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPD-HLLQKTTLQKLHIRRC 483 (510)
Q Consensus 419 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c 483 (510)
.+|+.+.+.+ .++.+ ...+|..+.+|+.+.+..+ ++.+.. .+..+++|+.+++..+
T Consensus 320 ~~L~~i~lp~--~v~~I-----~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 320 TSLVSIDLPY--LVEEI-----GKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTCCEECCCT--TCCEE-----CTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCEEEeCC--cccEE-----hHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 6777776643 13222 2334556777777777554 445543 4566778888877543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.01 E-value=5.3e-10 Score=94.64 Aligned_cols=103 Identities=24% Similarity=0.352 Sum_probs=86.3
Q ss_pred ceeEEEeccccccccccccccccccccccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccCchh-hhccc
Q 010462 137 CLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELPRG-IGKLR 214 (510)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~ 214 (510)
..++++++ ++.+..+|..+. .+|++|++++|. +..+ |..+.++++|++|+|++|. +..+|.. +..++
T Consensus 10 ~~~~l~~s-------~n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~ 78 (170)
T 3g39_A 10 SGTTVDCS-------GKSLASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLT 78 (170)
T ss_dssp ETTEEECT-------TSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCCEEEeC-------CCCcCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCC
Confidence 35789999 999999998774 899999999999 6666 6679999999999999999 6677765 58999
Q ss_pred cCceeecCCCcccccccc-cccCcccccccCcEEEeCc
Q 010462 215 KLMYLHNEGTDSLRYLPA-GIGELIRLRSVRKFVVGGG 251 (510)
Q Consensus 215 ~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~ 251 (510)
+|++|++++|.. ..+|. .+..+++|+.|++..+...
T Consensus 79 ~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 79 QLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCEEECCCCcc-CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 999999999954 55554 5889999999988876543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-09 Score=103.31 Aligned_cols=120 Identities=15% Similarity=0.225 Sum_probs=83.6
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccc-h
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLP-E 184 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp-~ 184 (510)
.+..++.+.+.++ +..+-..+|..+ +|+.+.+. ++ +..++ ..|.+ .+|+.+.+.. . ++.++ .
T Consensus 111 ~~~~l~~i~ip~~----i~~I~~~aF~~~-~L~~i~l~-------~~-i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~ 174 (401)
T 4fdw_A 111 ILKGYNEIILPNS----VKSIPKDAFRNS-QIAKVVLN-------EG-LKSIGDMAFFN-STVQEIVFPS-T-LEQLKED 174 (401)
T ss_dssp ECSSCSEEECCTT----CCEECTTTTTTC-CCSEEECC-------TT-CCEECTTTTTT-CCCCEEECCT-T-CCEECSS
T ss_pred ecCCccEEEECCc----cCEehHhhcccC-CccEEEeC-------CC-ccEECHHhcCC-CCceEEEeCC-C-ccEehHH
Confidence 4577777777765 555556667775 68888886 44 66674 45555 4788888876 3 66665 4
Q ss_pred hhhcccccceeccCCCCccccCchhhhccccCceeecCCCccccccc-ccccCcccccccCc
Q 010462 185 TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLP-AGIGELIRLRSVRK 245 (510)
Q Consensus 185 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l 245 (510)
+|.++++|+.+++.+|. +..+|.......+|+.+.+..+ +..++ ..+..+.+|+.+.+
T Consensus 175 aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp TTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred HhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence 68888999999998877 7777776666788888888754 33333 34666666766654
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-08 Score=98.26 Aligned_cols=221 Identities=14% Similarity=0.121 Sum_probs=145.8
Q ss_pred cccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccccccCccceEeccCCCCcccc
Q 010462 104 NVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKLLHLKYLSLFGQKKIEKL 182 (510)
Q Consensus 104 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~l 182 (510)
+|.++ +|+.+.+..+ +..+-..+|..+ .|+.+.+. + .+..+ +..|.++.+|+.+++..|. +..+
T Consensus 131 aF~~~-~L~~i~l~~~----i~~I~~~aF~~~-~L~~i~lp-------~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I 195 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG----LKSIGDMAFFNS-TVQEIVFP-------S-TLEQLKEDIFYYCYNLKKADLSKTK-ITKL 195 (401)
T ss_dssp TTTTC-CCSEEECCTT----CCEECTTTTTTC-CCCEEECC-------T-TCCEECSSTTTTCTTCCEEECTTSC-CSEE
T ss_pred hcccC-CccEEEeCCC----ccEECHHhcCCC-CceEEEeC-------C-CccEehHHHhhCcccCCeeecCCCc-ceEe
Confidence 34465 7999999876 555566678885 69999997 5 56777 4678889999999999988 8888
Q ss_pred chhhhcccccceeccCCCCccccCc-hhhhccccCceeecCCCcccccccc-cccCcccccccCcEEEeCccCCccCccc
Q 010462 183 PETLCELYNLERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGTDSLRYLPA-GIGELIRLRSVRKFVVGGGYDRACSLGS 260 (510)
Q Consensus 183 p~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 260 (510)
|.......+|+.+.+..+ +..++ ..|.++++|+.+++..+ +..++. .+.. .+|+.+.+
T Consensus 196 ~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~l--------------- 255 (401)
T 4fdw_A 196 PASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKL--------------- 255 (401)
T ss_dssp CTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEE---------------
T ss_pred chhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEe---------------
Confidence 876555799999999854 55554 45778999999999865 233332 2332 34444433
Q ss_pred ccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEE
Q 010462 261 LKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLR 340 (510)
Q Consensus 261 l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 340 (510)
.. . ........|.++++|+.+.+..+...... ........+..+++|+.+.
T Consensus 256 ------------p~--~---i~~I~~~aF~~c~~L~~l~l~~~~~~~~~------------~~~I~~~aF~~c~~L~~l~ 306 (401)
T 4fdw_A 256 ------------PN--G---VTNIASRAFYYCPELAEVTTYGSTFNDDP------------EAMIHPYCLEGCPKLARFE 306 (401)
T ss_dssp ------------ET--T---CCEECTTTTTTCTTCCEEEEESSCCCCCT------------TCEECTTTTTTCTTCCEEC
T ss_pred ------------CC--C---ccEEChhHhhCCCCCCEEEeCCccccCCc------------ccEECHHHhhCCccCCeEE
Confidence 11 0 00111235666777888877765411000 0011234566778888888
Q ss_pred EeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CCCCCccceeeccCcc
Q 010462 341 IDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 341 l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~ 394 (510)
+.+ .... ++...|.+|++|+.+.|..+ +..++. +.++ +|+.+.+.++.
T Consensus 307 l~~-~i~~--I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 307 IPE-SIRI--LGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CCT-TCCE--ECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred eCC-ceEE--EhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 874 3333 44466778888998888655 444443 7777 89999988775
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-08 Score=96.82 Aligned_cols=84 Identities=19% Similarity=0.237 Sum_probs=40.3
Q ss_pred hhcCCceeEEEeccccccccc-ccccccc-ccccccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccCch
Q 010462 132 FDKLTCLRALKLEVREQGLYT-NFIKKIP-TNIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELPR 208 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~-~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~ 208 (510)
+..+.+|++|+|+ + |.+..+| ..|.++.+|++|+|++|. +..+ |..|.+|++|+.|+|++|. +..+|.
T Consensus 27 l~~~~~L~~L~l~-------~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~ 97 (347)
T 2ifg_A 27 LPGAENLTELYIE-------NQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLSW 97 (347)
T ss_dssp SCSCSCCSEEECC-------SCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCCS
T ss_pred CCCCCCeeEEEcc-------CCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc-cceeCH
Confidence 4445555555554 4 4455443 344555555555555555 3333 2234555555555555554 444444
Q ss_pred hhhccccCceeecCCC
Q 010462 209 GIGKLRKLMYLHNEGT 224 (510)
Q Consensus 209 ~~~~l~~L~~L~l~~~ 224 (510)
.+.....|+.|++.+|
T Consensus 98 ~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGN 113 (347)
T ss_dssp TTTCSCCCCEEECCSS
T ss_pred HHcccCCceEEEeeCC
Confidence 3333223555555554
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.67 E-value=2.9e-08 Score=94.59 Aligned_cols=100 Identities=18% Similarity=0.104 Sum_probs=82.2
Q ss_pred EEEEee-cCCCccccccccccCCCCccEEEecc-CCcCccccchhHhhhcCCceeEEEecccccccccccccccc-cccc
Q 010462 87 LMLTLH-RGASVPIPIWDNVKGLRGLRSLLVES-GEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIE 163 (510)
Q Consensus 87 L~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~ 163 (510)
+.+.++ .+..+|. +. .+++|+.|+|++ |. +..+.+..|..+++|++|+|+ +|.+..+| ..|.
T Consensus 13 v~~~~~n~l~~ip~-l~----~~~~L~~L~l~~~n~---l~~~~~~~~~~l~~L~~L~l~-------~N~l~~~~~~~~~ 77 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LP----GAENLTELYIENQQH---LQHLELRDLRGLGELRNLTIV-------KSGLRFVAPDAFH 77 (347)
T ss_dssp EECCSSCCCTTTTT-SC----SCSCCSEEECCSCSS---CCEECGGGSCSCCCCSEEECC-------SSCCCEECTTGGG
T ss_pred EEcCCCCCCCccCC-CC----CCCCeeEEEccCCCC---CCCcChhHhccccCCCEEECC-------CCccceeCHHHhc
Confidence 455555 5666666 65 899999999996 87 666567789999999999999 99998884 5789
Q ss_pred ccCccceEeccCCCCccccchhhhcccccceeccCCCCc
Q 010462 164 KLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKN 202 (510)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~ 202 (510)
++++|++|+|++|. +..+|..+.....|+.|+|.+|..
T Consensus 78 ~l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 78 FTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp SCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CCcCCCEEeCCCCc-cceeCHHHcccCCceEEEeeCCCc
Confidence 99999999999999 888887655544599999999983
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.8e-09 Score=102.09 Aligned_cols=109 Identities=15% Similarity=0.158 Sum_probs=63.2
Q ss_pred CCCccEEEeccCCcCccc-cchhHhhh-cCCceeEEEeccccccccccccccc-cccc-cccCccceEeccCCCCccccc
Q 010462 108 LRGLRSLLVESGEYSWSN-EILPQLFD-KLTCLRALKLEVREQGLYTNFIKKI-PTNI-EKLLHLKYLSLFGQKKIEKLP 183 (510)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~-~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i-~~l~~L~~L~l~~~~~~~~lp 183 (510)
.++|+.|++++|.+.... ..+...+. ..++|++|+|+ +|.+... ...+ ..+.+|++|+|++|. ++..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls-------~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~ 142 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA-------SCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEA 142 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECT-------TCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEec-------CCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHH
Confidence 466778888887632111 01222222 23678888887 6665432 1222 235677888888887 54422
Q ss_pred -hhh-----hcccccceeccCCCCccc-----cCchhhhccccCceeecCCCc
Q 010462 184 -ETL-----CELYNLERLNVDHCKNLR-----ELPRGIGKLRKLMYLHNEGTD 225 (510)
Q Consensus 184 -~~~-----~~l~~L~~L~L~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~ 225 (510)
..+ ...++|++|+|++|. ++ .++..+..+++|++|++++|.
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred HHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 222 235678888888877 33 244555667778888888774
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.2e-07 Score=88.09 Aligned_cols=289 Identities=11% Similarity=0.044 Sum_probs=164.6
Q ss_pred ccchhHhhhcCCceeEEEeccccccccccccccc-cccccccCccceEeccCCCCccccch-hhhcccccceeccCCCCc
Q 010462 125 NEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKN 202 (510)
Q Consensus 125 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~ 202 (510)
..+-..+|..|.+|+.+.+. .+ +..+ ..+|.++.+|+.+++..+ ++.++. ++.++.+|+.+.+..+
T Consensus 60 tsIg~~AF~~c~~L~~i~lp-------~~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-- 127 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIP-------ST-VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-- 127 (394)
T ss_dssp EEECTTTTTTCTTEEEEECC-------TT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT--
T ss_pred eEhHHHHhhCCCCceEEEeC-------CC-ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc--
Confidence 34445669999999999996 43 6677 456888999999999765 566654 5778889988877654
Q ss_pred cccCc-hhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCCh
Q 010462 203 LRELP-RGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDA 281 (510)
Q Consensus 203 ~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~ 281 (510)
+..+. ..+..+..+......... ..-...+..+++|+.+.+.... . ......+..+.+|+.+.+.. .+
T Consensus 128 l~~i~~~aF~~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~-~---~I~~~~F~~c~~L~~i~l~~--~~--- 196 (394)
T 4fs7_A 128 LKSIGVEAFKGCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSM-E---TLHNGLFSGCGKLKSIKLPR--NL--- 196 (394)
T ss_dssp CCEECTTTTTTCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTC-C---EECTTTTTTCTTCCBCCCCT--TC---
T ss_pred eeeecceeeecccccccccCcccc--ccchhhhcccCCCcEEecCCcc-c---eeccccccCCCCceEEEcCC--Cc---
Confidence 33332 334444433333332221 1112346677777777653111 0 11122344445555555432 11
Q ss_pred hhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhc
Q 010462 282 GEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTN 361 (510)
Q Consensus 282 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~ 361 (510)
.......+.++..|+.+.+..+. ..+........+|+.+.+.... .. ++...+..+.+
T Consensus 197 ~~I~~~~F~~~~~L~~i~~~~~~-------------------~~i~~~~~~~~~l~~i~ip~~~-~~--i~~~~f~~~~~ 254 (394)
T 4fs7_A 197 KIIRDYCFAECILLENMEFPNSL-------------------YYLGDFALSKTGVKNIIIPDSF-TE--LGKSVFYGCTD 254 (394)
T ss_dssp CEECTTTTTTCTTCCBCCCCTTC-------------------CEECTTTTTTCCCCEEEECTTC-CE--ECSSTTTTCSS
T ss_pred eEeCchhhccccccceeecCCCc-------------------eEeehhhcccCCCceEEECCCc-ee--ccccccccccc
Confidence 11122345566677766554332 1111223344678888775432 11 23245567788
Q ss_pred ccceeccCccCCCcCCCCCCCCccceeeccCccccEEecccccCCCCCCCCCcccccccccccccccccccccccccccc
Q 010462 362 LRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAI 441 (510)
Q Consensus 362 L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~ 441 (510)
|+.+.+..+...-....+..++.++.+...... ++... +..+.+|+.+.+.+ .++.+ .
T Consensus 255 l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~-----------F~~~~~L~~i~l~~--~i~~I-----~ 312 (394)
T 4fs7_A 255 LESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI----VPEKT-----------FYGCSSLTEVKLLD--SVKFI-----G 312 (394)
T ss_dssp CCEEEECCTTCEECSCTTTTCTTCCEEEECSSE----ECTTT-----------TTTCTTCCEEEECT--TCCEE-----C
T ss_pred ceeEEcCCCcceeeccccccccccceeccCcee----ecccc-----------cccccccccccccc--cccee-----c
Confidence 888888765221122236677778777765422 33222 23567788777644 23332 2
Q ss_pred ccccccCcccceeeeccCcccccCCc-ccCCCCCCcEEEEcC
Q 010462 442 KREIIIMPRLSSLTIWSCRKLKALPD-HLLQKTTLQKLHIRR 482 (510)
Q Consensus 442 ~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~ 482 (510)
..+|..+.+|+.++|..+ ++.+.. .+.++++|+.+.+..
T Consensus 313 ~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp TTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCT
T ss_pred hhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECc
Confidence 344567899999999654 556644 566788999988854
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.1e-09 Score=99.78 Aligned_cols=159 Identities=18% Similarity=0.121 Sum_probs=106.4
Q ss_pred CceeEEEEEeecCCCc-ccccccccc-CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-
Q 010462 82 TKILHLMLTLHRGASV-PIPIWDNVK-GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI- 158 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~-~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l- 158 (510)
..++.|++.++.+... ...+...+. ..++|+.|++++|.+. ..........+++|+.|+|+ +|.+...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~L~~L~~L~Ls-------~n~l~~~~ 142 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGLRTLLPVFLRARKLGLQ-------LNSLGPEA 142 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC--HHHHHHTHHHHHTEEEEECC-------SSCCCHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC--HHHHHHHHHHHHhccHhhcC-------CCCCCHHH
Confidence 6688999988877641 122221222 3379999999999732 12133334566789999999 8876543
Q ss_pred ----cccc-cccCccceEeccCCCCccc-----cchhhhcccccceeccCCCCcccc-----CchhhhccccCceeecCC
Q 010462 159 ----PTNI-EKLLHLKYLSLFGQKKIEK-----LPETLCELYNLERLNVDHCKNLRE-----LPRGIGKLRKLMYLHNEG 223 (510)
Q Consensus 159 ----p~~i-~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~L~~~~~~~~-----lp~~~~~l~~L~~L~l~~ 223 (510)
...+ ...++|++|+|++|. ++. ++..+..+++|++|+|++|. +.. ++..+...++|+.|++++
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 2222 246789999999998 654 55566788999999999998 432 455677788999999999
Q ss_pred Ccccc----cccccccCcccccccCcEEEeCc
Q 010462 224 TDSLR----YLPAGIGELIRLRSVRKFVVGGG 251 (510)
Q Consensus 224 ~~~~~----~~p~~l~~l~~L~~L~l~~~~~~ 251 (510)
|.... .++..+...++|++|++..|.+.
T Consensus 221 N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 221 NGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp SCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 95432 23333445566777766655443
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.9e-06 Score=80.00 Aligned_cols=105 Identities=13% Similarity=0.155 Sum_probs=73.0
Q ss_pred ccCCC-CccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccc---cccc-cccccccCccceEeccCCCCc
Q 010462 105 VKGLR-GLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNF---IKKI-PTNIEKLLHLKYLSLFGQKKI 179 (510)
Q Consensus 105 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~l-p~~i~~l~~L~~L~l~~~~~~ 179 (510)
|.+++ .|+.+.+..+ +..+-..+|..|.+|+.+.+. .+. +..+ ...|..+.+|+.+.+..+ +
T Consensus 59 F~~~~~~L~sI~iP~s----vt~Ig~~AF~~C~~L~~i~~~-------~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~ 125 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT----VTEIGSNAFYNCTSLKRVTIQ-------DNKPSCVKKIGRQAFMFCSELTDIPILDS--V 125 (394)
T ss_dssp TTTCCSCCCEEEECTT----CCEECTTTTTTCTTCCEEEEG-------GGCCCCCCEECTTTTTTCTTCCBCGGGTT--C
T ss_pred ccCCCCcCEEEEECCC----eeEEhHHHhhCCccCceEeec-------CCCCCeeeEechhhchhcccceeeccCCc--c
Confidence 34674 5899988765 555566779999999999987 543 5566 356777888888887665 4
Q ss_pred cccch-hhhcccccceeccCCCCccccCc-hhhhccccCceeecCCC
Q 010462 180 EKLPE-TLCELYNLERLNVDHCKNLRELP-RGIGKLRKLMYLHNEGT 224 (510)
Q Consensus 180 ~~lp~-~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~ 224 (510)
+.++. .+..+.+|+.+.+..+. ..++ ..+..+.+|+.+.+..+
T Consensus 126 ~~I~~~aF~~c~~L~~i~lp~~~--~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 126 TEIDSEAFHHCEELDTVTIPEGV--TSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp SEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECCTT
T ss_pred ceehhhhhhhhccccccccccee--eeecccceecccccccccccce
Confidence 55543 56788889888886542 3333 34667778888877654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.42 E-value=8.4e-07 Score=85.98 Aligned_cols=302 Identities=11% Similarity=0.102 Sum_probs=162.2
Q ss_pred cccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCcccc
Q 010462 104 NVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKL 182 (510)
Q Consensus 104 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l 182 (510)
+|.+|.+|+.+.+..+....+..+-..+|..|..|+.+.+. .+ +..++ ..+..+.+|+.+.+..+ +..+
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~-------~~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I 151 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL-------DS-VTEIDSEAFHHCEELDTVTIPEG--VTSV 151 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG-------TT-CSEECTTTTTTCTTCCEEECCTT--CCEE
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccC-------Cc-cceehhhhhhhhcccccccccce--eeee
Confidence 45599999999998764333555556679999999988875 33 55563 56778999999999765 4555
Q ss_pred c-hhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccc
Q 010462 183 P-ETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSL 261 (510)
Q Consensus 183 p-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 261 (510)
+ ..+..+.+|+.+.+..+ +..+........+|+.+.+..+. ...-...+..+.++............. ....
T Consensus 152 ~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~-~~~~--- 224 (394)
T 4gt6_A 152 ADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAI-DNVL--- 224 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBS-SSCE---
T ss_pred cccceecccccccccccce--eeEeccccccccceeEEEECCcc-cccccchhhhccccceecccccccccc-ccee---
Confidence 4 45778999999998764 45554444445678888876541 112223344444444332211100000 0000
Q ss_pred cccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEE
Q 010462 262 KKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRI 341 (510)
Q Consensus 262 ~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 341 (510)
-.-.......+. .......+..+.+... ....-...+..+..|+.+.+
T Consensus 225 ~~~~~~~~~~~~--------------~~~~~~~~~~~~ip~~------------------v~~i~~~aF~~c~~L~~i~l 272 (394)
T 4gt6_A 225 YEKSANGDYALI--------------RYPSQREDPAFKIPNG------------------VARIETHAFDSCAYLASVKM 272 (394)
T ss_dssp EEECTTSCEEEE--------------ECCTTCCCSEEECCTT------------------EEEECTTTTTTCSSCCEEEC
T ss_pred eccccccccccc--------------ccccccccceEEcCCc------------------ceEcccceeeecccccEEec
Confidence 000000000000 0001111222221110 00011223455667777776
Q ss_pred eecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CCCCCccceeeccCccccEEecccccCCCCCCCCCcccccc
Q 010462 342 DEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFP 419 (510)
Q Consensus 342 ~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 419 (510)
.+.... ++...+.++++|+.+.+.. .+..++. +..+.+|+.+.|.. .++.++... +.++.
T Consensus 273 p~~~~~---I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~a-----------F~~C~ 334 (394)
T 4gt6_A 273 PDSVVS---IGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDA-----------FAGCE 334 (394)
T ss_dssp CTTCCE---ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTT-----------TTTCT
T ss_pred ccccce---ecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhH-----------hhCCC
Confidence 543221 3324556778888887754 3444443 77788888888864 266665543 23667
Q ss_pred ccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcC
Q 010462 420 KLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRR 482 (510)
Q Consensus 420 ~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 482 (510)
+|+++.|-. +++.+ ...+|..+++|+.+++.++.... ..+..+.+|+.+.+..
T Consensus 335 ~L~~i~ip~--sv~~I-----~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 335 QLERIAIPS--SVTKI-----PESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAP 387 (394)
T ss_dssp TCCEEEECT--TCCBC-----CGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-------
T ss_pred CCCEEEECc--ccCEE-----hHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCC
Confidence 888887743 23332 23456678899999988764321 2445567788777754
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.42 E-value=8.5e-08 Score=91.04 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=19.7
Q ss_pred CCCCccEEEEeecCCccCC---CchhHHhhhhcccceeccCcc
Q 010462 332 PPPNLKKLRIDEYRGRRNV---VPISWFMSLTNLRFLFLFGWR 371 (510)
Q Consensus 332 ~~~~L~~L~l~~~~~~~~~---~p~~~~~~l~~L~~L~L~~~~ 371 (510)
.+++|++|+|+.|.+.... ++ ..+..+++|+.|++++|.
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~-~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLL-DHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHH-TTHHHHTTCSEEECCSBB
T ss_pred cCCCCCEEECCCCCCChHHHHHHH-hhcccCCcceEEECCCCc
Confidence 3456666666655543210 11 122345666666666663
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.2e-07 Score=88.16 Aligned_cols=135 Identities=16% Similarity=0.195 Sum_probs=76.1
Q ss_pred CceeEEEEEeecCC-Cc----cccccccccCCCCccEEEeccCCc-----Cccc-cchhHhhhcCCceeEEEeccccccc
Q 010462 82 TKILHLMLTLHRGA-SV----PIPIWDNVKGLRGLRSLLVESGEY-----SWSN-EILPQLFDKLTCLRALKLEVREQGL 150 (510)
Q Consensus 82 ~~~~~L~l~~~~~~-~~----~~~~~~~~~~~~~L~~L~l~~~~~-----~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~ 150 (510)
.+++.|.+...... .. ...+..++..+++|+.|.+..... .+.. ..+...+..+++|+.|+++
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~------ 180 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIK------ 180 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEE------
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEe------
Confidence 55777777654432 00 011222334778999998865431 1111 1255667888899999998
Q ss_pred cccccccccccccccCccceEeccCCCCccc-cchhhh--cccccceeccCCCCc-------cccCchhh--hccccCce
Q 010462 151 YTNFIKKIPTNIEKLLHLKYLSLFGQKKIEK-LPETLC--ELYNLERLNVDHCKN-------LRELPRGI--GKLRKLMY 218 (510)
Q Consensus 151 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-lp~~~~--~l~~L~~L~L~~~~~-------~~~lp~~~--~~l~~L~~ 218 (510)
++.-..++. + .+++|+.|++..|. +.. ....+. .+++|+.|+|+.+.. +..+...+ ..+++|++
T Consensus 181 -g~~~l~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~ 256 (362)
T 2ra8_A 181 -GTNNLSIGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKW 256 (362)
T ss_dssp -CCBTCBCCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCE
T ss_pred -CCCCceecc-c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCE
Confidence 553223443 3 37888999988776 332 222333 688888888853210 11121112 24677777
Q ss_pred eecCCCcc
Q 010462 219 LHNEGTDS 226 (510)
Q Consensus 219 L~l~~~~~ 226 (510)
|++.+|..
T Consensus 257 L~L~~~~i 264 (362)
T 2ra8_A 257 LGIVDAEE 264 (362)
T ss_dssp EEEESCTT
T ss_pred EeCCCCCC
Confidence 77777643
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=6.9e-07 Score=76.39 Aligned_cols=114 Identities=12% Similarity=0.029 Sum_probs=76.9
Q ss_pred cccCCCCccEEEeccC-CcCcc-ccchhHhhhcCCceeEEEecccccccccccccc-----ccccccccCccceEeccCC
Q 010462 104 NVKGLRGLRSLLVESG-EYSWS-NEILPQLFDKLTCLRALKLEVREQGLYTNFIKK-----IPTNIEKLLHLKYLSLFGQ 176 (510)
Q Consensus 104 ~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----lp~~i~~l~~L~~L~l~~~ 176 (510)
.+...+.|++|++++| .+... ...+...+...+.|++|+|+ +|.+.. +...+...+.|++|+|++|
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls-------~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV-------GTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT-------TSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECc-------CCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 3447888888888888 63211 01144456777888888888 666543 4455566678888888888
Q ss_pred CCccc-----cchhhhcccccceecc--CCCCcccc----CchhhhccccCceeecCCCc
Q 010462 177 KKIEK-----LPETLCELYNLERLNV--DHCKNLRE----LPRGIGKLRKLMYLHNEGTD 225 (510)
Q Consensus 177 ~~~~~-----lp~~~~~l~~L~~L~L--~~~~~~~~----lp~~~~~l~~L~~L~l~~~~ 225 (510)
. ++. +...+...+.|++|+| ++|..... +...+...++|++|++++|.
T Consensus 104 ~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 104 F-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp C-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred c-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 8 655 4555677788888888 66763222 34445566788888888874
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.8e-07 Score=93.29 Aligned_cols=60 Identities=10% Similarity=0.144 Sum_probs=45.5
Q ss_pred CCC--CCcCCCC-CCCHHHHHHHHHHHHHhCCCCceeecCCCCcEeeEEeChhHHHHHHHHhcCCeE
Q 010462 1 MAQ--DYLSEKG-PKEMGDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCSNGCL 64 (510)
Q Consensus 1 iae--g~i~~~~-~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~~~e~~ 64 (510)
+|| ||+...+ +.+++++++ ||++|+++||++.+..+ ...+|+|||++|++|++++.+++.
T Consensus 411 ~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 411 SCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred eeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 467 9999877 678899999 99999999999987653 345699999999999999877653
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.20 E-value=5.1e-07 Score=81.20 Aligned_cols=60 Identities=27% Similarity=0.378 Sum_probs=27.6
Q ss_pred hcCCceeEEEeccccccccccccccc---cccccccCccceEeccCCCCccccchhhhccc--ccceeccCCCC
Q 010462 133 DKLTCLRALKLEVREQGLYTNFIKKI---PTNIEKLLHLKYLSLFGQKKIEKLPETLCELY--NLERLNVDHCK 201 (510)
Q Consensus 133 ~~l~~L~~L~l~~~~~~~~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~L~L~~~~ 201 (510)
..+++|+.|+|+ +|.+..+ |..+..+++|++|+|++|. +..+.. +..+. +|++|+|++|+
T Consensus 167 ~~l~~L~~L~Ls-------~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~-l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLS-------NNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE-LDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECT-------TSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGG-GGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECC-------CCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchh-hhhcccCCcceEEccCCc
Confidence 344555555555 4444433 2333445555555555555 443321 33333 45555555555
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.3e-06 Score=74.64 Aligned_cols=117 Identities=16% Similarity=0.129 Sum_probs=83.0
Q ss_pred cccchhHhhhcCCceeEEEecccccccccc-ccc-----cccccccccCccceEeccCCCCccc-----cchhhhccccc
Q 010462 124 SNEILPQLFDKLTCLRALKLEVREQGLYTN-FIK-----KIPTNIEKLLHLKYLSLFGQKKIEK-----LPETLCELYNL 192 (510)
Q Consensus 124 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~-----~lp~~i~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L 192 (510)
....+...+...+.|++|+|+ ++ .+. .+...+...++|++|+|++|. ++. +...+...++|
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~-------~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L 95 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLN-------NIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTL 95 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECT-------TCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHhcCCCCCEEEec-------CCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCc
Confidence 334466678889999999999 76 554 355667778899999999998 654 44556677899
Q ss_pred ceeccCCCCcccc-----CchhhhccccCceeec--CCCccccc----ccccccCcccccccCcEEEe
Q 010462 193 ERLNVDHCKNLRE-----LPRGIGKLRKLMYLHN--EGTDSLRY----LPAGIGELIRLRSVRKFVVG 249 (510)
Q Consensus 193 ~~L~L~~~~~~~~-----lp~~~~~l~~L~~L~l--~~~~~~~~----~p~~l~~l~~L~~L~l~~~~ 249 (510)
++|+|++|. +.. +...+...++|++|++ ++|..... +...+...++|+.|++..+.
T Consensus 96 ~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 96 KSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 999999998 433 4566777889999999 77744322 22334445666666665443
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.99 E-value=8.5e-06 Score=73.23 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=63.1
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccC--ccceEeccCCCCccccch
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLL--HLKYLSLFGQKKIEKLPE 184 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~--~L~~L~l~~~~~~~~lp~ 184 (510)
.+++|++|+|++|.+..+.. ++..+..+++|++|+|+ +|.+..+ ..+..+. +|++|+|++|.+...+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~-l~~~~~~l~~L~~L~Ls-------~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDD-MSSIVQKAPNLKILNLS-------GNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGG-GTTHHHHSTTCCEEECT-------TSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hCCCCCEEECCCCCCCCCcc-chhHHhhCCCCCEEECC-------CCccCCc-hhhhhcccCCcceEEccCCcCccccCc
Confidence 68999999999999655544 56778899999999999 9998877 3355555 999999999994444542
Q ss_pred -------hhhcccccceecc
Q 010462 185 -------TLCELYNLERLNV 197 (510)
Q Consensus 185 -------~~~~l~~L~~L~L 197 (510)
.+..+++|+.||=
T Consensus 239 ~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHHHCTTCCEESS
T ss_pred chhHHHHHHHHCcccCeECC
Confidence 3556777777763
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.4e-05 Score=72.25 Aligned_cols=78 Identities=12% Similarity=0.180 Sum_probs=40.2
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccchh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLPET 185 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~ 185 (510)
...+|+.+.+... +..+-..+|..|.+|+.+.+. .+ +..+. .+|.++ .|+.+.+..+ ++.++..
T Consensus 44 ~~~~i~~v~ip~~----vt~Ig~~aF~~C~~L~~I~lp-------~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~ 108 (379)
T 4h09_A 44 DRDRISEVRVNSG----ITSIGEANFNSCYNMTKVTVA-------ST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDY 108 (379)
T ss_dssp GGGGCSEEEECTT----EEEECTTTTTTCTTCCEEEEC-------TT-CCEECTTTTTTC-CCCEEEECTT--CCEECTT
T ss_pred cccCCEEEEeCCC----ccChHHHHhhCCCCCCEEEeC-------Cc-ceEechhhhcCC-CCceEECCce--eeEeccc
Confidence 4456666666554 444445556666777776664 32 44443 334443 4555555433 4444443
Q ss_pred hhcccccceeccCC
Q 010462 186 LCELYNLERLNVDH 199 (510)
Q Consensus 186 ~~~l~~L~~L~L~~ 199 (510)
.....+|+.+.+..
T Consensus 109 aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 109 VFQGTDLDDFEFPG 122 (379)
T ss_dssp TTTTCCCSEEECCT
T ss_pred eeccCCcccccCCC
Confidence 22223566666644
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.88 E-value=3.5e-06 Score=70.15 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=10.0
Q ss_pred cccccccccccccccccc
Q 010462 417 AFPKLKHLTFWVMNALEE 434 (510)
Q Consensus 417 ~~~~L~~L~l~~~~~L~~ 434 (510)
.+++|++|++++|+.++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 445555555555555554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.88 E-value=2.3e-06 Score=71.27 Aligned_cols=69 Identities=10% Similarity=0.210 Sum_probs=42.8
Q ss_pred cccccccccCccceEeccCCCCcccc-chhhhcccccceeccCCCCccccC-chhhhcc----ccCceeecCCCcc
Q 010462 157 KIPTNIEKLLHLKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLREL-PRGIGKL----RKLMYLHNEGTDS 226 (510)
Q Consensus 157 ~lp~~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l----~~L~~L~l~~~~~ 226 (510)
.+|.....-.+|+.|++++|. ++.. -..+.++++|+.|+|++|..++.- -..+..+ ++|++|++++|..
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN 126 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred cCCcccCCCceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence 345433334578888888887 5542 233677888888888888755431 1223443 3678888877743
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00024 Score=68.14 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=62.4
Q ss_pred cccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccc
Q 010462 104 NVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLP 183 (510)
Q Consensus 104 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp 183 (510)
+|.+|.+|+.+.+..+ +..+-..+|..+ .|+.+.+. . .+..+.+......+|+.+.+..+ +..+.
T Consensus 64 aF~~C~~L~~I~lp~~----v~~Ig~~aF~~c-~l~~i~~~-------~-~l~~I~~~aF~~~~L~~i~lp~~--~~~i~ 128 (379)
T 4h09_A 64 NFNSCYNMTKVTVAST----VTSIGDGAFADT-KLQSYTGM-------E-RVKKFGDYVFQGTDLDDFEFPGA--TTEIG 128 (379)
T ss_dssp TTTTCTTCCEEEECTT----CCEECTTTTTTC-CCCEEEEC-------T-TCCEECTTTTTTCCCSEEECCTT--CCEEC
T ss_pred HhhCCCCCCEEEeCCc----ceEechhhhcCC-CCceEECC-------c-eeeEeccceeccCCcccccCCCc--ccccc
Confidence 3459999999999765 455556678887 57777664 3 35566443333458999998765 44554
Q ss_pred hhhhcccccceeccCCCCccccC-chhhhccccCceeecCCC
Q 010462 184 ETLCELYNLERLNVDHCKNLREL-PRGIGKLRKLMYLHNEGT 224 (510)
Q Consensus 184 ~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~ 224 (510)
.....-.+|+...+..+ +..+ ...+..+.+++...+...
T Consensus 129 ~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 129 NYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp TTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTT
T ss_pred ccccccceeeeeeccce--eeccccchhcccccccccccccc
Confidence 43322235655555443 2222 233556677777666544
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0081 Score=50.84 Aligned_cols=110 Identities=13% Similarity=0.077 Sum_probs=59.6
Q ss_pred CCCCccEEEeccC-CcCcc-ccchhHhhhcCCceeEEEecccccccccccccc-----ccccccccCccceEeccCCCCc
Q 010462 107 GLRGLRSLLVESG-EYSWS-NEILPQLFDKLTCLRALKLEVREQGLYTNFIKK-----IPTNIEKLLHLKYLSLFGQKKI 179 (510)
Q Consensus 107 ~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~ 179 (510)
.-+.|+.|+|+++ .+... ...+..++..-..|+.|+|+ +|.++. +.+.+..-..|++|+|++|. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~-------~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-I 110 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLA-------NTAISDSEARGLIELIETSPSLRVLNVESNF-L 110 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECT-------TSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-C
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEcc-------CCCCChHHHHHHHHHHhcCCccCeEecCCCc-C
Confidence 5567777777764 42110 01134445566677777777 665542 33444445667777777777 5
Q ss_pred cc-----cchhhhcccccceeccCCCCc--cc-----cCchhhhccccCceeecCCC
Q 010462 180 EK-----LPETLCELYNLERLNVDHCKN--LR-----ELPRGIGKLRKLMYLHNEGT 224 (510)
Q Consensus 180 ~~-----lp~~~~~l~~L~~L~L~~~~~--~~-----~lp~~~~~l~~L~~L~l~~~ 224 (510)
+. +-..+..-+.|+.|+|+++.. +. .+...+..-+.|+.|+++.+
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 53 223344445577777765431 11 12233444556666666554
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.03 Score=44.01 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=25.9
Q ss_pred ccccc--cccccccccCccceEeccCCCCccccchh-hhcccccceeccCCCC
Q 010462 152 TNFIK--KIPTNIEKLLHLKYLSLFGQKKIEKLPET-LCELYNLERLNVDHCK 201 (510)
Q Consensus 152 ~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~ 201 (510)
+..+. .+|..+. .+|++|+|++|. ++.+|.. |..+++|++|+|++|.
T Consensus 17 ~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 17 RRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp SSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 44554 5554332 346666666666 5555543 4456666666666655
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.022 Score=48.17 Aligned_cols=93 Identities=17% Similarity=0.146 Sum_probs=62.2
Q ss_pred cccchhHhhhcCCceeEEEecccccccccc-ccc-----cccccccccCccceEeccCCCCccc-----cchhhhccccc
Q 010462 124 SNEILPQLFDKLTCLRALKLEVREQGLYTN-FIK-----KIPTNIEKLLHLKYLSLFGQKKIEK-----LPETLCELYNL 192 (510)
Q Consensus 124 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~-----~lp~~i~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L 192 (510)
....+...+..-+.|+.|+|+ ++ .+. .+.+.+..-..|+.|+|++|. +++ +...+..-+.|
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~-------~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL 100 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNIN-------NMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSL 100 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECT-------TCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSC
T ss_pred HHHHHHHHHhcCCCccEEECC-------CCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCcc
Confidence 333355556677889999998 64 443 245566667789999999998 654 34445666789
Q ss_pred ceeccCCCCcccc----CchhhhccccCceeecCCC
Q 010462 193 ERLNVDHCKNLRE----LPRGIGKLRKLMYLHNEGT 224 (510)
Q Consensus 193 ~~L~L~~~~~~~~----lp~~~~~l~~L~~L~l~~~ 224 (510)
++|+|++|.+... +-..+..-+.|++|+++++
T Consensus 101 ~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 101 RVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 9999998883221 2333445566888888764
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.12 Score=40.56 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=23.2
Q ss_pred ceeEEEeccccccccccccccccc-cccccCccceEeccCCC
Q 010462 137 CLRALKLEVREQGLYTNFIKKIPT-NIEKLLHLKYLSLFGQK 177 (510)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 177 (510)
+|++|+|+ +|.+..+|. .|..+++|++|+|.+|.
T Consensus 32 ~l~~L~Ls-------~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLT-------GNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECT-------TSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECC-------CCcCCccChhhhhhccccCEEEecCCC
Confidence 46777777 777777753 34557777777777776
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.1 Score=58.21 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhCCCCceeecCCCCcEeeEEeChhHHHHHHHHhcCC
Q 010462 15 GDIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLCSNG 62 (510)
Q Consensus 15 e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~~~e 62 (510)
++.++.++++|+++||++.... ++..+|+|||++|++++..+.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~~---~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNRN---GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEES---SSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEecC---CCceEEEecHHHHHHHHhhhhHH
Confidence 5788999999999999997543 44456999999999999987654
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=85.07 E-value=0.62 Score=49.76 Aligned_cols=36 Identities=11% Similarity=-0.054 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhCCCCceeecCCCCcEeeEEeChhHHHHHH
Q 010462 16 DIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQ 56 (510)
Q Consensus 16 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~ 56 (510)
+.++.+|++|+++|||+... ...+|+|||++++++.
T Consensus 402 edAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHhc
Confidence 46899999999999999742 2246899999999653
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.47 E-value=1.1 Score=45.20 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCCCceeecCCCCcEeeEEeChhHHHHHHHHh
Q 010462 16 DIGEEYFNILASRSFFQDFYKGYGGEIYKCKMHDIVHDFAQYLC 59 (510)
Q Consensus 16 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~ 59 (510)
+.++.++++|+++||++.... +....|+|||++|++++...
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhh
Confidence 467899999999999986543 33456899999999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 510 | ||||
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 0.001 | |
| d1m9la_ | 198 | c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree | 0.001 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.003 |
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.6 bits (93), Expect = 3e-04
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 167 HLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDS 226
L+ L++ K+ +LP LERL +L E+P L++L +N
Sbjct: 285 SLEELNV-SNNKLIELPALPP---RLERLIASFN-HLAEVPELPQNLKQLHVEYNP---- 335
Query: 227 LRYLPAGIGELIRLR 241
LR P + LR
Sbjct: 336 LREFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.6 bits (93), Expect = 4e-04
Identities = 27/179 (15%), Positives = 55/179 (30%), Gaps = 16/179 (8%)
Query: 43 YKCKMHDIVHDFAQYLCSNGCLTVEIHSGEQSTISSFGETKILHLMLTLHRGASVPIPIW 102
+L + + + S + + L +
Sbjct: 191 NNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLD 250
Query: 103 DNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI 162
+ GL L + S+ + L D L L + N + ++P
Sbjct: 251 VSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV-------SNNKLIELPALP 303
Query: 163 EKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHN 221
+L L S + ++PE NL++L+V++ LRE P + L +++
Sbjct: 304 PRLERL-IAS---FNHLAEVPELPQ---NLKQLHVEYNP-LREFPDIPESVEDL-RMNS 353
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.001
Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 1/94 (1%)
Query: 139 RALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQK-KIEKLPETLCELYNLERLNV 197
R L V +F+ + ++++ L ++ L L + L+ L++
Sbjct: 19 RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 78
Query: 198 DHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLP 231
+ + + + K L+ L+ G
Sbjct: 79 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Score = 38.1 bits (87), Expect = 0.001
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 161 NIEKLLHLKYLSLFGQ-KKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYL 219
+ + L G IEK+ TL L + L + N+ ++ + + L L
Sbjct: 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRIL 75
Query: 220 HN 221
Sbjct: 76 SL 77
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.003
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 327 LEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLE 386
+ + L++L V +S +LTN+ +L G L PL L +
Sbjct: 322 ISPVSSLTKLQRLFFA----NNKVSDVSSLANLTNINWLSA-GHNQISDLTPLANLTRIT 376
Query: 387 YLEIEG 392
L +
Sbjct: 377 QLGLND 382
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 510 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.87 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.86 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.82 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.82 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.8 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.79 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.69 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.69 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.69 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.67 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.62 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.62 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.6 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.57 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.56 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.51 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.5 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.49 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.47 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.46 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.44 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.43 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.42 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.41 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.37 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.35 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.32 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.26 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.24 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.22 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.16 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.08 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.0 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.95 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.95 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.85 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.25 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.05 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.34 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.02 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.73 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.42 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.87 E-value=1.3e-21 Score=188.44 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=49.6
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+.+|++|++.++. +.. +.+ +..+++|++|+++ +|.+..+|. ++++++|++|++++|. +..++. +
T Consensus 42 ~l~~l~~L~l~~~~---I~~-l~g-l~~L~nL~~L~Ls-------~N~l~~l~~-l~~L~~L~~L~L~~n~-i~~i~~-l 106 (384)
T d2omza2 42 DLDQVTTLQADRLG---IKS-IDG-VEYLNNLTQINFS-------NNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-L 106 (384)
T ss_dssp HHTTCCEEECCSSC---CCC-CTT-GGGCTTCCEEECC-------SSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-G
T ss_pred HhCCCCEEECCCCC---CCC-ccc-cccCCCCCEEeCc-------CCcCCCCcc-ccCCcccccccccccc-cccccc-c
Confidence 45566666666665 222 222 5566667777776 666666653 6666667777776666 555554 6
Q ss_pred hcccccceeccCCCC
Q 010462 187 CELYNLERLNVDHCK 201 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~ 201 (510)
+++++|+.|+++++.
T Consensus 107 ~~l~~L~~L~~~~~~ 121 (384)
T d2omza2 107 ANLTNLTGLTLFNNQ 121 (384)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccccccccccccccc
Confidence 666667777666665
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.86 E-value=2.2e-22 Score=188.05 Aligned_cols=250 Identities=20% Similarity=0.184 Sum_probs=132.3
Q ss_pred CccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccc-ccc-ccccccccccCccceEeccCCCCccccchhhh
Q 010462 110 GLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYT-NFI-KKIPTNIEKLLHLKYLSLFGQKKIEKLPETLC 187 (510)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~ 187 (510)
+++.|+++++....... +|..+..+++|++|+|+ + +.+ +.+|..|+++++|++|++++|.+.+..|..+.
T Consensus 51 ~v~~L~L~~~~l~g~~~-lp~~l~~L~~L~~L~Ls-------~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~ 122 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIG-------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEE-------EETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred EEEEEECCCCCCCCCCC-CChHHhcCccccccccc-------cccccccccccccccccccchhhhcccccccccccccc
Confidence 44555555544222112 34445555555555554 3 222 24555555555555555555553233344455
Q ss_pred cccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccc-cccCcEEEeCccCCccCccccccccc
Q 010462 188 ELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRL-RSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 188 ~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L-~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
.+.+|+.+++++|.....+|..+.++++|+.+++++|.....+|..++.+.++ +.+.+..+... +.....+..+..
T Consensus 123 ~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~---~~~~~~~~~l~~ 199 (313)
T d1ogqa_ 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT---GKIPPTFANLNL 199 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE---EECCGGGGGCCC
T ss_pred chhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccc---cccccccccccc
Confidence 55555555555555444555555555555555555554444455544444443 22322222211 111122222211
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCC
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRG 346 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (510)
+ .+.+.... .....+..+..+++++.+++..+. . ...+..+..+++|+.|++++|.+
T Consensus 200 ~-~l~l~~~~----~~~~~~~~~~~~~~l~~l~~~~~~-----------------l-~~~~~~~~~~~~L~~L~Ls~N~l 256 (313)
T d1ogqa_ 200 A-FVDLSRNM----LEGDASVLFGSDKNTQKIHLAKNS-----------------L-AFDLGKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp S-EEECCSSE----EEECCGGGCCTTSCCSEEECCSSE-----------------E-CCBGGGCCCCTTCCEEECCSSCC
T ss_pred c-cccccccc----cccccccccccccccccccccccc-----------------c-cccccccccccccccccCccCee
Confidence 1 12222110 111123344556677777776664 1 11234566778888888888887
Q ss_pred ccCCCchhHHhhhhcccceeccCccCCCcCCCCCCCCccceeeccCccc
Q 010462 347 RRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGKLPSLEYLEIEGMKS 395 (510)
Q Consensus 347 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~ 395 (510)
... +| .++.++++|++|+|++|...+.+|.++++++|+.+++.+|+.
T Consensus 257 ~g~-iP-~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 257 YGT-LP-QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp EEC-CC-GGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred ccc-CC-hHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCcc
Confidence 733 78 778888888888888887766788888888888888888763
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.82 E-value=1.2e-19 Score=174.59 Aligned_cols=320 Identities=19% Similarity=0.229 Sum_probs=220.0
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
..++.|.+.++.+..+ ..+. .+++|++|++++|+ +.+ ++. +..+++|++|+++ +|.+..++.
T Consensus 44 ~~l~~L~l~~~~I~~l-~gl~----~L~nL~~L~Ls~N~---l~~-l~~-l~~L~~L~~L~L~-------~n~i~~i~~- 105 (384)
T d2omza2 44 DQVTTLQADRLGIKSI-DGVE----YLNNLTQINFSNNQ---LTD-ITP-LKNLTKLVDILMN-------NNQIADITP- 105 (384)
T ss_dssp TTCCEEECCSSCCCCC-TTGG----GCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECC-------SSCCCCCGG-
T ss_pred CCCCEEECCCCCCCCc-cccc----cCCCCCEEeCcCCc---CCC-Ccc-ccCCccccccccc-------ccccccccc-
Confidence 6789999999888754 3444 89999999999998 555 343 8999999999999 999888864
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCc--------------------hhhhccccCceeec
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELP--------------------RGIGKLRKLMYLHN 221 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp--------------------~~~~~l~~L~~L~l 221 (510)
++++++|++|+++++. +..++. ......+..+....+. +..+. ..+...+.......
T Consensus 106 l~~l~~L~~L~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (384)
T d2omza2 106 LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 182 (384)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEEC
T ss_pred cccccccccccccccc-cccccc-cccccccccccccccc-ccccccccccccccccccccccchhhhhccccccccccc
Confidence 8899999999999998 666655 3344455555444333 11111 11222222333333
Q ss_pred CCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEE
Q 010462 222 EGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLH 301 (510)
Q Consensus 222 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 301 (510)
..+. ...+.....+++++.+.+..+.... +......++|+.+++.+... .. ...+..+++|+.+++.
T Consensus 183 ~~~~--~~~~~~~~~l~~~~~l~l~~n~i~~-----~~~~~~~~~L~~L~l~~n~l-~~-----~~~l~~l~~L~~L~l~ 249 (384)
T d2omza2 183 SSNK--VSDISVLAKLTNLESLIATNNQISD-----ITPLGILTNLDELSLNGNQL-KD-----IGTLASLTNLTDLDLA 249 (384)
T ss_dssp CSSC--CCCCGGGGGCTTCSEEECCSSCCCC-----CGGGGGCTTCCEEECCSSCC-CC-----CGGGGGCTTCSEEECC
T ss_pred cccc--cccccccccccccceeeccCCccCC-----CCcccccCCCCEEECCCCCC-CC-----cchhhcccccchhccc
Confidence 3321 1223345566677777665544332 23345556677777765422 21 1246677889999998
Q ss_pred ecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCCCCC
Q 010462 302 FGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPPLGK 381 (510)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~~~~ 381 (510)
.+.... ...+..+++|+.|+++++.... ++ .+..++.++.+.+..|. ...++.+..
T Consensus 250 ~n~l~~-------------------~~~~~~~~~L~~L~l~~~~l~~--~~--~~~~~~~l~~l~~~~n~-l~~~~~~~~ 305 (384)
T d2omza2 250 NNQISN-------------------LAPLSGLTKLTELKLGANQISN--IS--PLAGLTALTNLELNENQ-LEDISPISN 305 (384)
T ss_dssp SSCCCC-------------------CGGGTTCTTCSEEECCSSCCCC--CG--GGTTCTTCSEEECCSSC-CSCCGGGGG
T ss_pred cCccCC-------------------CCcccccccCCEeeccCcccCC--CC--ccccccccccccccccc-cccccccch
Confidence 876211 1235678899999999988876 55 35678889999998884 445666788
Q ss_pred CCccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcc
Q 010462 382 LPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRK 461 (510)
Q Consensus 382 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 461 (510)
+++++.|++++|. ++.++. +..+|+|++|++++|. ++.+. .+..+++|+.|++++| .
T Consensus 306 ~~~l~~L~ls~n~-l~~l~~-------------l~~l~~L~~L~L~~n~-l~~l~-------~l~~l~~L~~L~l~~N-~ 362 (384)
T d2omza2 306 LKNLTYLTLYFNN-ISDISP-------------VSSLTKLQRLFFANNK-VSDVS-------SLANLTNINWLSAGHN-Q 362 (384)
T ss_dssp CTTCSEEECCSSC-CSCCGG-------------GGGCTTCCEEECCSSC-CCCCG-------GGGGCTTCCEEECCSS-C
T ss_pred hcccCeEECCCCC-CCCCcc-------------cccCCCCCEEECCCCC-CCCCh-------hHcCCCCCCEEECCCC-c
Confidence 8999999999876 444321 3578999999999984 66542 2468999999999998 5
Q ss_pred cccCCcccCCCCCCcEEEEcCC
Q 010462 462 LKALPDHLLQKTTLQKLHIRRC 483 (510)
Q Consensus 462 l~~lp~~~~~l~~L~~L~l~~c 483 (510)
++.+++ +.++++|+.|+|++|
T Consensus 363 l~~l~~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 363 ISDLTP-LANLTRITQLGLNDQ 383 (384)
T ss_dssp CCBCGG-GTTCTTCSEEECCCE
T ss_pred CCCChh-hccCCCCCEeeCCCC
Confidence 667764 788999999999986
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.82 E-value=5.9e-21 Score=178.19 Aligned_cols=224 Identities=18% Similarity=0.127 Sum_probs=142.2
Q ss_pred CceeEEEeccccccccccccc---cccccccccCccceEeccC-CCCccccchhhhcccccceeccCCCCccccCchhhh
Q 010462 136 TCLRALKLEVREQGLYTNFIK---KIPTNIEKLLHLKYLSLFG-QKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIG 211 (510)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~---~lp~~i~~l~~L~~L~l~~-~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~ 211 (510)
.+++.|+|+ ++.+. .+|..++++++|++|+|++ |.+.+.+|.++++|++|++|+|++|......|..+.
T Consensus 50 ~~v~~L~L~-------~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~ 122 (313)
T d1ogqa_ 50 YRVNNLDLS-------GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEE-------CCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred EEEEEEECC-------CCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccccccc
Confidence 468999999 76654 5899999999999999987 665568999999999999999999996666777789
Q ss_pred ccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCC-ceecCcccCCChhhhhHhhcc
Q 010462 212 KLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRD-CRIRGLGDVSDAGEARRAELE 290 (510)
Q Consensus 212 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~-l~i~~~~~~~~~~~~~~~~l~ 290 (510)
.+.+|++++++.|.....+|..++.+++|+.+++..+... +..+..+..+..+.. +.+... .+ .......+.
T Consensus 123 ~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~---~~ip~~~~~l~~l~~~l~~~~n-~l---~~~~~~~~~ 195 (313)
T d1ogqa_ 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS---GAIPDSYGSFSKLFTSMTISRN-RL---TGKIPPTFA 195 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE---EECCGGGGCCCTTCCEEECCSS-EE---EEECCGGGG
T ss_pred chhhhcccccccccccccCchhhccCcccceeeccccccc---cccccccccccccccccccccc-cc---ccccccccc
Confidence 9999999999999888889999999999999988766544 223344444444322 322221 00 001111122
Q ss_pred CCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCc
Q 010462 291 KKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGW 370 (510)
Q Consensus 291 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~ 370 (510)
.+. ...+++..+. .....+..+..+++++.+++.++.... .+ ..+..+++|+.|++++|
T Consensus 196 ~l~-~~~l~l~~~~-----------------~~~~~~~~~~~~~~l~~l~~~~~~l~~--~~-~~~~~~~~L~~L~Ls~N 254 (313)
T d1ogqa_ 196 NLN-LAFVDLSRNM-----------------LEGDASVLFGSDKNTQKIHLAKNSLAF--DL-GKVGLSKNLNGLDLRNN 254 (313)
T ss_dssp GCC-CSEEECCSSE-----------------EEECCGGGCCTTSCCSEEECCSSEECC--BG-GGCCCCTTCCEEECCSS
T ss_pred ccc-cccccccccc-----------------ccccccccccccccccccccccccccc--cc-cccccccccccccCccC
Confidence 221 1233333332 112233344455555666655555443 22 23444555666666655
Q ss_pred cCCCcCCC-CCCCCccceeeccCcc
Q 010462 371 RNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 371 ~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
+..+.+|. ++++++|++|+|++|.
T Consensus 255 ~l~g~iP~~l~~L~~L~~L~Ls~N~ 279 (313)
T d1ogqa_ 255 RIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp CCEECCCGGGGGCTTCCEEECCSSE
T ss_pred eecccCChHHhCCCCCCEEECcCCc
Confidence 44444544 5555566666665554
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.80 E-value=3.2e-19 Score=165.70 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=43.1
Q ss_pred ccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEEecc
Q 010462 328 EALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGN 401 (510)
Q Consensus 328 ~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~ 401 (510)
..+..++.++.|.+++|.... ++..++.++++|++|+|++|. +..+|. +..+++|++|+|++|. ++.++.
T Consensus 189 ~~~~~~~~l~~L~~s~n~l~~--~~~~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~ 259 (305)
T d1xkua_ 189 ASLKGLNNLAKLGLSFNSISA--VDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN-ISAIGS 259 (305)
T ss_dssp GGGTTCTTCCEEECCSSCCCE--ECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC-CCCCCT
T ss_pred hHhhccccccccccccccccc--cccccccccccceeeeccccc-ccccccccccccCCCEEECCCCc-cCccCh
Confidence 445556667777777666655 432566667777777777773 334443 6667777777777664 555543
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.79 E-value=7.1e-19 Score=163.27 Aligned_cols=131 Identities=16% Similarity=0.148 Sum_probs=81.4
Q ss_pred CCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCccccEEecccccCCCC
Q 010462 330 LGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMKSVKRVGNEFLGVES 408 (510)
Q Consensus 330 l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 408 (510)
+..+++|+.+.+.++.... +| .. .+++|+.|++++|......+. +..++.++.|++++|. +..++...
T Consensus 146 ~~~l~~L~~l~l~~n~l~~--l~-~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~-l~~~~~~~----- 214 (305)
T d1xkua_ 146 FQGMKKLSYIRIADTNITT--IP-QG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGS----- 214 (305)
T ss_dssp GGGCTTCCEEECCSSCCCS--CC-SS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTT-----
T ss_pred cccccccCccccccCCccc--cC-cc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccc-cccccccc-----
Confidence 3445566667776666555 55 22 356777777777655544443 6667777777777765 55554322
Q ss_pred CCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccccCCcc-------cCCCCCCcEEEEc
Q 010462 409 DTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDH-------LLQKTTLQKLHIR 481 (510)
Q Consensus 409 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-------~~~l~~L~~L~l~ 481 (510)
+..+++|++|+++++. ++.+ |..+..+++|+.|++++| .++.++.. ...+++|+.|+++
T Consensus 215 ------~~~l~~L~~L~L~~N~-L~~l------p~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~ 280 (305)
T d1xkua_ 215 ------LANTPHLRELHLNNNK-LVKV------PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLF 280 (305)
T ss_dssp ------GGGSTTCCEEECCSSC-CSSC------CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred ------ccccccceeeeccccc-cccc------ccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECC
Confidence 2356777777777763 5433 344567788888888887 46666432 2345778888888
Q ss_pred CCcc
Q 010462 482 RCPI 485 (510)
Q Consensus 482 ~c~~ 485 (510)
+||.
T Consensus 281 ~N~~ 284 (305)
T d1xkua_ 281 SNPV 284 (305)
T ss_dssp SSSS
T ss_pred CCcC
Confidence 8873
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.6e-17 Score=150.78 Aligned_cols=141 Identities=21% Similarity=0.247 Sum_probs=86.8
Q ss_pred EEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-ccccccCc
Q 010462 89 LTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP-TNIEKLLH 167 (510)
Q Consensus 89 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~ 167 (510)
..+.+...+|..++ +.++.|++++|. +..+.+..|..+++|++|+++ ++.+..++ ..+..+..
T Consensus 18 c~~~~L~~iP~~ip------~~~~~L~Ls~N~---i~~i~~~~f~~l~~L~~L~ls-------~n~l~~i~~~~~~~~~~ 81 (284)
T d1ozna_ 18 CPQQGLQAVPVGIP------AASQRIFLHGNR---ISHVPAASFRACRNLTILWLH-------SNVLARIDAAAFTGLAL 81 (284)
T ss_dssp CCSSCCSSCCTTCC------TTCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCCEECTTTTTTCTT
T ss_pred cCCCCCCccCCCCC------CCCCEEECcCCc---CCCCCHHHhhccccccccccc-------ccccccccccccccccc
Confidence 33444444555443 457778888877 455455567778888888887 77777663 44455677
Q ss_pred cceEeccCCCCcccc-chhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccccccc-ccccCcccccccCc
Q 010462 168 LKYLSLFGQKKIEKL-PETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLP-AGIGELIRLRSVRK 245 (510)
Q Consensus 168 L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l 245 (510)
++.+....+..+..+ |.++.++++|++|++++|......+..+..+++|+.+++++|.. ..+| ..+..+++|+.|++
T Consensus 82 ~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l-~~i~~~~f~~~~~L~~L~l 160 (284)
T d1ozna_ 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFL 160 (284)
T ss_dssp CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccc-cccChhHhccccchhhccc
Confidence 777766544436555 44577777888888887773333334456677777788777743 3333 33455555555554
Q ss_pred E
Q 010462 246 F 246 (510)
Q Consensus 246 ~ 246 (510)
.
T Consensus 161 ~ 161 (284)
T d1ozna_ 161 H 161 (284)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2e-17 Score=149.85 Aligned_cols=62 Identities=24% Similarity=0.303 Sum_probs=44.7
Q ss_pred CCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC-CCCCCccceeeccCcc
Q 010462 330 LGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 330 l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
+..+++++.+++++|.... ++...+..+++|++|+|++|. ++.+|. +..+++|+.|+|++|+
T Consensus 144 ~~~l~~l~~l~l~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 144 LTPTPKLEKLSLANNNLTE--LPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp TTTCTTCCEEECTTSCCSC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred ccccccchhcccccccccc--cCccccccccccceeecccCC-CcccChhHCCCCCCCEEEecCCC
Confidence 3456677788888777766 553566778888888888885 446665 6678888888888765
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.69 E-value=2.2e-16 Score=149.43 Aligned_cols=57 Identities=32% Similarity=0.420 Sum_probs=40.5
Q ss_pred cccccccccccccccccccccccccccccccCcccceeeeccCcccccCCcccCCCCCCcEEEEcCCcchHH
Q 010462 417 AFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLKALPDHLLQKTTLQKLHIRRCPILEE 488 (510)
Q Consensus 417 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 488 (510)
.+|+|++|++++|. ++.++ ..+++|+.|++++| .++.+|.. +++|++|++++|+ ++.
T Consensus 282 ~~~~L~~L~Ls~N~-l~~lp---------~~~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~-L~~ 338 (353)
T d1jl5a_ 282 LPPSLEELNVSNNK-LIELP---------ALPPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNP-LRE 338 (353)
T ss_dssp CCTTCCEEECCSSC-CSCCC---------CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSS
T ss_pred cCCCCCEEECCCCc-cCccc---------cccCCCCEEECCCC-cCCccccc---cCCCCEEECcCCc-CCC
Confidence 46788888888874 55432 24678888888887 46777753 4678888888886 543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.1e-16 Score=144.99 Aligned_cols=141 Identities=18% Similarity=0.120 Sum_probs=87.1
Q ss_pred eEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccc
Q 010462 85 LHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEK 164 (510)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~ 164 (510)
..++..+..++.+|..++ ++++.|+|++|. +..+.+..|..+++|++|+|+ +|.+..+|. ++.
T Consensus 13 ~~v~C~~~~L~~iP~~lp------~~l~~L~Ls~N~---i~~l~~~~f~~l~~L~~L~L~-------~N~l~~l~~-~~~ 75 (266)
T d1p9ag_ 13 LEVNCDKRNLTALPPDLP------KDTTILHLSENL---LYTFSLATLMPYTRLTQLNLD-------RAELTKLQV-DGT 75 (266)
T ss_dssp CEEECTTSCCSSCCSCCC------TTCCEEECTTSC---CSEEEGGGGTTCTTCCEEECT-------TSCCCEEEC-CSC
T ss_pred eEEEccCCCCCeeCcCcC------cCCCEEECcCCc---CCCcCHHHhhccccccccccc-------ccccccccc-ccc
Confidence 344555555555554443 467777777776 444445567777777777777 777776653 456
Q ss_pred cCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccccccc-ccccCccccccc
Q 010462 165 LLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLP-AGIGELIRLRSV 243 (510)
Q Consensus 165 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L 243 (510)
+++|++|++++|+ +...|..+..+++|+.|+++++......+..+..+.++++|++++|.. ..+| ..+..+++|+.+
T Consensus 76 l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l-~~l~~~~~~~l~~l~~l 153 (266)
T d1p9ag_ 76 LPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKL 153 (266)
T ss_dssp CTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEE
T ss_pred ccccccccccccc-ccccccccccccccccccccccccceeecccccccccccccccccccc-ceeccccccccccchhc
Confidence 7777777777777 666666677777777777777763333344456677777777777633 3333 223334444444
Q ss_pred C
Q 010462 244 R 244 (510)
Q Consensus 244 ~ 244 (510)
+
T Consensus 154 ~ 154 (266)
T d1p9ag_ 154 S 154 (266)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3e-16 Score=143.60 Aligned_cols=201 Identities=21% Similarity=0.211 Sum_probs=125.3
Q ss_pred CceeEEEecccccccccccccccc-ccccccCccceEeccCCCCccccc-hhhhcccccceeccCCCCccccC-chhhhc
Q 010462 136 TCLRALKLEVREQGLYTNFIKKIP-TNIEKLLHLKYLSLFGQKKIEKLP-ETLCELYNLERLNVDHCKNLREL-PRGIGK 212 (510)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~ 212 (510)
..+++|+|+ +|.+..+| ..|.++.+|++|+++++. +..++ ..+..+..++.++...+..+..+ |..+.+
T Consensus 32 ~~~~~L~Ls-------~N~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 103 (284)
T d1ozna_ 32 AASQRIFLH-------GNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103 (284)
T ss_dssp TTCSEEECT-------TSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCCCEEECc-------CCcCCCCCHHHhhcccccccccccccc-ccccccccccccccccccccccccccccccchhhcc
Confidence 467888888 88888886 457778888888888887 55554 34556777888776655546555 445777
Q ss_pred cccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCC
Q 010462 213 LRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKK 292 (510)
Q Consensus 213 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~ 292 (510)
+++|++|++++|......+..+..+.+|+.+++..+.... .....+..+
T Consensus 104 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~-------------------------------i~~~~f~~~ 152 (284)
T d1ozna_ 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-------------------------------LPDDTFRDL 152 (284)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------------------------CCTTTTTTC
T ss_pred cccCCEEecCCcccccccccccchhcccchhhhccccccc-------------------------------cChhHhccc
Confidence 8888888888875433334445555666665554332221 001123444
Q ss_pred CCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccC
Q 010462 293 KSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRN 372 (510)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~ 372 (510)
++|+.|++.+|. .....+..+..+++|+.+.+.+|.... ..| .++..+++|++|++++|..
T Consensus 153 ~~L~~L~l~~N~-----------------l~~l~~~~f~~l~~L~~l~l~~N~l~~-i~~-~~f~~l~~L~~L~l~~N~i 213 (284)
T d1ozna_ 153 GNLTHLFLHGNR-----------------ISSVPERAFRGLHSLDRLLLHQNRVAH-VHP-HAFRDLGRLMTLYLFANNL 213 (284)
T ss_dssp TTCCEEECCSSC-----------------CCEECTTTTTTCTTCCEEECCSSCCCE-ECT-TTTTTCTTCCEEECCSSCC
T ss_pred cchhhcccccCc-----------------ccccchhhhccccccchhhhhhccccc-cCh-hHhhhhhhccccccccccc
Confidence 566666666664 111223445566777777777776665 134 6667777777777777754
Q ss_pred CCcCCC-CCCCCccceeeccCcc
Q 010462 373 CEHLPP-LGKLPSLEYLEIEGMK 394 (510)
Q Consensus 373 ~~~l~~-~~~l~~L~~L~L~~~~ 394 (510)
....+. ++.+++|++|+|++|+
T Consensus 214 ~~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 214 SALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp SCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccccccccccccccCEEEecCCC
Confidence 443332 6677777777777765
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.62 E-value=1.8e-15 Score=143.07 Aligned_cols=297 Identities=22% Similarity=0.225 Sum_probs=159.1
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
.++++|++.++.++.+|. ..++|++|++++|+ +.. +|.. +.+|+.|+++ ++.+..+++.
T Consensus 38 ~~l~~LdLs~~~L~~lp~-------~~~~L~~L~Ls~N~---l~~-lp~~---~~~L~~L~l~-------~n~l~~l~~l 96 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLPE-------LPPHLESLVASCNS---LTE-LPEL---PQSLKSLLVD-------NNNLKALSDL 96 (353)
T ss_dssp HTCSEEECTTSCCSCCCS-------CCTTCSEEECCSSC---CSS-CCCC---CTTCCEEECC-------SSCCSCCCSC
T ss_pred cCCCEEEeCCCCCCCCCC-------CCCCCCEEECCCCC---Ccc-cccc---hhhhhhhhhh-------hcccchhhhh
Confidence 345677777776665542 23577778887776 333 3432 3567777777 6666665432
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
.+.|++|++++|. +..+|. ++.+++|++|+++++. +...|..+ ..+..+.+..+.. ..+..++.++.++
T Consensus 97 ---p~~L~~L~L~~n~-l~~lp~-~~~l~~L~~L~l~~~~-~~~~~~~~---~~l~~l~~~~~~~--~~~~~l~~l~~l~ 165 (353)
T d1jl5a_ 97 ---PPLLEYLGVSNNQ-LEKLPE-LQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQL--EELPELQNLPFLT 165 (353)
T ss_dssp ---CTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSCC--SSCCCCTTCTTCC
T ss_pred ---ccccccccccccc-cccccc-hhhhccceeecccccc-cccccccc---ccccchhhccccc--cccccccccccce
Confidence 1357778888777 777775 5677788888887776 44444432 3445555544422 1123345555555
Q ss_pred ccCcEEEeCccCCccCcccccccc-cCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcc
Q 010462 242 SVRKFVVGGGYDRACSLGSLKKLN-LLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEE 320 (510)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~l~~l~-~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 320 (510)
.+.+..+.... ..... ....+.... .... ....+..++.|+.+.++.+....
T Consensus 166 ~L~l~~n~~~~--------~~~~~~~~~~l~~~~-~~~~-----~~~~~~~l~~L~~l~l~~n~~~~------------- 218 (353)
T d1jl5a_ 166 AIYADNNSLKK--------LPDLPLSLESIVAGN-NILE-----ELPELQNLPFLTTIYADNNLLKT------------- 218 (353)
T ss_dssp EEECCSSCCSS--------CCCCCTTCCEEECCS-SCCS-----SCCCCTTCTTCCEEECCSSCCSS-------------
T ss_pred ecccccccccc--------ccccccccccccccc-cccc-----ccccccccccccccccccccccc-------------
Confidence 55544332221 00000 001111111 0000 11123455677777777664111
Q ss_pred hhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCcc----------------CCCcCCC-CCCCC
Q 010462 321 DEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWR----------------NCEHLPP-LGKLP 383 (510)
Q Consensus 321 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~----------------~~~~l~~-~~~l~ 383 (510)
......++..+.+.++.... .+ .. .+.+....+..+. ....++. ...++
T Consensus 219 --------~~~~~~~l~~~~~~~~~~~~--~~-~~---~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 284 (353)
T d1jl5a_ 219 --------LPDLPPSLEALNVRDNYLTD--LP-EL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP 284 (353)
T ss_dssp --------CCSCCTTCCEEECCSSCCSC--CC-CC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCT
T ss_pred --------cccccccccccccccccccc--cc-cc---cccccccccccccccccccccchhcccccccCccccccccCC
Confidence 01122345555555544433 22 11 1112211111110 0001111 23468
Q ss_pred ccceeeccCccccEEecccccCCCCCCCCCccccccccccccccccccccccccccccccccccCcccceeeeccCcccc
Q 010462 384 SLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREIIIMPRLSSLTIWSCRKLK 463 (510)
Q Consensus 384 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 463 (510)
+|++|+|++|. ++.++. .+++|+.|+++++. ++++. ..+++|++|++++|+ ++
T Consensus 285 ~L~~L~Ls~N~-l~~lp~---------------~~~~L~~L~L~~N~-L~~l~---------~~~~~L~~L~L~~N~-L~ 337 (353)
T d1jl5a_ 285 SLEELNVSNNK-LIELPA---------------LPPRLERLIASFNH-LAEVP---------ELPQNLKQLHVEYNP-LR 337 (353)
T ss_dssp TCCEEECCSSC-CSCCCC---------------CCTTCCEEECCSSC-CSCCC---------CCCTTCCEEECCSSC-CS
T ss_pred CCCEEECCCCc-cCcccc---------------ccCCCCEEECCCCc-CCccc---------cccCCCCEEECcCCc-CC
Confidence 99999999986 555542 57899999998874 66543 246789999999996 78
Q ss_pred cCCcccCCCCCCcEEEEc
Q 010462 464 ALPDHLLQKTTLQKLHIR 481 (510)
Q Consensus 464 ~lp~~~~~l~~L~~L~l~ 481 (510)
.+|.. ..+|+.|.+.
T Consensus 338 ~lp~~---~~~L~~L~~~ 352 (353)
T d1jl5a_ 338 EFPDI---PESVEDLRMN 352 (353)
T ss_dssp SCCCC---CTTCCEEECC
T ss_pred CCCcc---ccccCeeECc
Confidence 89864 4577777664
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.60 E-value=1.4e-15 Score=134.07 Aligned_cols=189 Identities=19% Similarity=0.179 Sum_probs=96.3
Q ss_pred hhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhh
Q 010462 132 FDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIG 211 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~ 211 (510)
+..+.+|+.|++. ++.+..++ .+.++++|++|++++|. +..++. +.++++|+++++++|. ++.++ .+.
T Consensus 37 ~~~l~~L~~L~l~-------~~~i~~l~-~l~~l~~L~~L~ls~n~-i~~~~~-l~~l~~l~~l~~~~n~-~~~i~-~l~ 104 (227)
T d1h6ua2 37 QADLDGITTLSAF-------GTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIA 104 (227)
T ss_dssp HHHHHTCCEEECT-------TSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGT
T ss_pred HHHcCCcCEEECC-------CCCCCcch-hHhcCCCCcEeecCCce-eecccc-cccccccccccccccc-ccccc-ccc
Confidence 3445566666666 66666653 45666666666666665 555443 5666666666666665 44444 255
Q ss_pred ccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccC
Q 010462 212 KLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEK 291 (510)
Q Consensus 212 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~ 291 (510)
++++|+.++++++.... ++ .+.....+..+. +....... ...+..
T Consensus 105 ~l~~L~~l~l~~~~~~~-~~-~~~~~~~~~~l~---------------------------~~~~~~~~------~~~~~~ 149 (227)
T d1h6ua2 105 GLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLY---------------------------LDLNQITN------ISPLAG 149 (227)
T ss_dssp TCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEE---------------------------CCSSCCCC------CGGGGG
T ss_pred ccccccccccccccccc-cc-hhccccchhhhh---------------------------chhhhhch------hhhhcc
Confidence 66666666666553211 11 111222222221 11100000 011223
Q ss_pred CCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCcc
Q 010462 292 KKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWR 371 (510)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~ 371 (510)
+++|+.|.+..+... ....+..+++|+.|++++|.... ++ .+..+++|++|++++|
T Consensus 150 ~~~L~~L~l~~n~~~-------------------~~~~l~~l~~L~~L~Ls~n~l~~--l~--~l~~l~~L~~L~Ls~N- 205 (227)
T d1h6ua2 150 LTNLQYLSIGNAQVS-------------------DLTPLANLSKLTTLKADDNKISD--IS--PLASLPNLIEVHLKNN- 205 (227)
T ss_dssp CTTCCEEECCSSCCC-------------------CCGGGTTCTTCCEEECCSSCCCC--CG--GGGGCTTCCEEECTTS-
T ss_pred ccccccccccccccc-------------------cchhhcccccceecccCCCccCC--Ch--hhcCCCCCCEEECcCC-
Confidence 445555555544310 01124456667777776666554 44 3556667777777766
Q ss_pred CCCcCCCCCCCCccceeecc
Q 010462 372 NCEHLPPLGKLPSLEYLEIE 391 (510)
Q Consensus 372 ~~~~l~~~~~l~~L~~L~L~ 391 (510)
.++.++.++++++|+.|+|+
T Consensus 206 ~lt~i~~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 206 QISDVSPLANTSNLFIVTLT 225 (227)
T ss_dssp CCCBCGGGTTCTTCCEEEEE
T ss_pred cCCCCcccccCCCCCEEEee
Confidence 34555556666666666664
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.57 E-value=1e-15 Score=134.93 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=47.3
Q ss_pred ccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCC
Q 010462 152 TNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGT 224 (510)
Q Consensus 152 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 224 (510)
.+.+..+ ..+..+.+|++|++.+|. ++.++ .+..+++|++|++++|. +..++. +.++++|+++++++|
T Consensus 28 ~~~~~d~-~~~~~l~~L~~L~l~~~~-i~~l~-~l~~l~~L~~L~ls~n~-i~~~~~-l~~l~~l~~l~~~~n 95 (227)
T d1h6ua2 28 KSNVTDT-VTQADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGN 95 (227)
T ss_dssp CSSTTSE-ECHHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSC
T ss_pred CCCcCCc-CCHHHcCCcCEEECCCCC-CCcch-hHhcCCCCcEeecCCce-eecccc-ccccccccccccccc
Confidence 4444443 234567788888888887 77775 47788888888888877 555543 777788888887776
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.56 E-value=3.6e-15 Score=129.41 Aligned_cols=78 Identities=28% Similarity=0.378 Sum_probs=44.9
Q ss_pred CCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccc
Q 010462 135 LTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLR 214 (510)
Q Consensus 135 l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~ 214 (510)
+..|+.|+++ ++.+..++ .+..+++|++|++++|. ++.++. ++.+++|++|++++|. ++.+|. +..++
T Consensus 45 L~~L~~L~l~-------~~~i~~l~-~l~~l~~L~~L~L~~n~-i~~l~~-~~~l~~L~~L~l~~n~-i~~l~~-l~~l~ 112 (210)
T d1h6ta2 45 LNSIDQIIAN-------NSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLK 112 (210)
T ss_dssp HHTCCEEECT-------TSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCT
T ss_pred hcCccEEECc-------CCCCCCch-hHhhCCCCCEEeCCCcc-ccCccc-cccCcccccccccccc-cccccc-ccccc
Confidence 4455666666 55555553 25556666666666665 555553 5556666666666665 555542 55566
Q ss_pred cCceeecCCC
Q 010462 215 KLMYLHNEGT 224 (510)
Q Consensus 215 ~L~~L~l~~~ 224 (510)
+|+.|++++|
T Consensus 113 ~L~~L~l~~~ 122 (210)
T d1h6ta2 113 KLKSLSLEHN 122 (210)
T ss_dssp TCCEEECTTS
T ss_pred cccccccccc
Confidence 6666666555
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.51 E-value=3.5e-14 Score=123.08 Aligned_cols=142 Identities=23% Similarity=0.258 Sum_probs=72.5
Q ss_pred ceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccc
Q 010462 83 KILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNI 162 (510)
Q Consensus 83 ~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i 162 (510)
.+++|.+.++.+.... .+. .+++|+.|++++|+ +.+ ++. +..+++|++|+++ +|.+..+| .+
T Consensus 47 ~L~~L~l~~~~i~~l~-~l~----~l~~L~~L~L~~n~---i~~-l~~-~~~l~~L~~L~l~-------~n~i~~l~-~l 108 (210)
T d1h6ta2 47 SIDQIIANNSDIKSVQ-GIQ----YLPNVTKLFLNGNK---LTD-IKP-LANLKNLGWLFLD-------ENKVKDLS-SL 108 (210)
T ss_dssp TCCEEECTTSCCCCCT-TGG----GCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECC-------SSCCCCGG-GG
T ss_pred CccEEECcCCCCCCch-hHh----hCCCCCEEeCCCcc---ccC-ccc-cccCccccccccc-------cccccccc-cc
Confidence 4555555555444322 122 55666666666665 222 222 4555666666665 55555554 35
Q ss_pred cccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccc
Q 010462 163 EKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRS 242 (510)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 242 (510)
.++++|++|++++|. +..++. +..+++|+.+++++|. +...+ .+..+++|+++++++|.. ..++. ++.+++|+.
T Consensus 109 ~~l~~L~~L~l~~~~-~~~~~~-l~~l~~l~~l~~~~n~-l~~~~-~~~~l~~L~~l~l~~n~l-~~i~~-l~~l~~L~~ 182 (210)
T d1h6ta2 109 KDLKKLKSLSLEHNG-ISDING-LVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQN 182 (210)
T ss_dssp TTCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCC-CCCGG-GTTCTTCCE
T ss_pred ccccccccccccccc-cccccc-cccccccccccccccc-ccccc-cccccccccccccccccc-ccccc-ccCCCCCCE
Confidence 555666666666655 444443 5555666666665555 33332 355556666666665532 33322 455555555
Q ss_pred cCcEEE
Q 010462 243 VRKFVV 248 (510)
Q Consensus 243 L~l~~~ 248 (510)
|++.++
T Consensus 183 L~Ls~N 188 (210)
T d1h6ta2 183 LYLSKN 188 (210)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 555443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.50 E-value=5e-14 Score=120.97 Aligned_cols=144 Identities=19% Similarity=0.260 Sum_probs=79.0
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
.+++.|.+.++.+..+. .+. .+++|++|++++|+ +.. ++. +..+++|++|+++ ++.+..++.
T Consensus 40 ~~l~~L~l~~~~i~~l~-~l~----~l~nL~~L~Ls~N~---l~~-~~~-l~~l~~L~~L~l~-------~n~~~~~~~- 101 (199)
T d2omxa2 40 DQVTTLQADRLGIKSID-GVE----YLNNLTQINFSNNQ---LTD-ITP-LKNLTKLVDILMN-------NNQIADITP- 101 (199)
T ss_dssp TTCCEEECTTSCCCCCT-TGG----GCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECC-------SSCCCCCGG-
T ss_pred cCCCEEECCCCCCCCcc-ccc----cCCCcCcCcccccc---ccC-ccc-ccCCccccccccc-------ccccccccc-
Confidence 45566666655554321 222 56666666666665 223 222 5666666666666 555555542
Q ss_pred ccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCccccc
Q 010462 162 IEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLR 241 (510)
Q Consensus 162 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 241 (510)
+.++++|++|+++++. ...++. +..+++|+.|++++|. +..+| .+..+++|+.|++.+|. +..++ .++++++|+
T Consensus 102 l~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~~L~l~~n~-l~~l~-~l~~l~~L~ 175 (199)
T d2omxa2 102 LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLNFSSNQ-VTDLK-PLANLTTLE 175 (199)
T ss_dssp GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCC
T ss_pred cccccccccccccccc-cccccc-cchhhhhHHhhhhhhh-hcccc-ccccccccccccccccc-ccCCc-cccCCCCCC
Confidence 5566666666666665 444332 5566666666666665 44444 35566666666666663 23333 255556666
Q ss_pred ccCcEEEe
Q 010462 242 SVRKFVVG 249 (510)
Q Consensus 242 ~L~l~~~~ 249 (510)
.|++.++.
T Consensus 176 ~L~ls~N~ 183 (199)
T d2omxa2 176 RLDISSNK 183 (199)
T ss_dssp EEECCSSC
T ss_pred EEECCCCC
Confidence 66555443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.49 E-value=9.5e-14 Score=119.18 Aligned_cols=162 Identities=19% Similarity=0.239 Sum_probs=126.1
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhh
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETL 186 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 186 (510)
.+++++.|++.++.+ .. ++. ++.+++|++|+++ +|.+..++. ++++++|++|++++|. +..++. +
T Consensus 38 ~l~~l~~L~l~~~~i---~~-l~~-l~~l~nL~~L~Ls-------~N~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~~-l 102 (199)
T d2omxa2 38 DLDQVTTLQADRLGI---KS-IDG-VEYLNNLTQINFS-------NNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-L 102 (199)
T ss_dssp HHTTCCEEECTTSCC---CC-CTT-GGGCTTCCEEECC-------SSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-G
T ss_pred HhcCCCEEECCCCCC---CC-ccc-cccCCCcCcCccc-------cccccCccc-ccCCcccccccccccc-cccccc-c
Confidence 678999999999984 33 333 7889999999999 999888865 8899999999999998 788875 8
Q ss_pred hcccccceeccCCCCccccCchhhhccccCceeecCCCcccccccccccCcccccccCcEEEeCccCCccCccccccccc
Q 010462 187 CELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 266 (510)
Q Consensus 187 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 266 (510)
.++++|+.|++++|. ....+ .+..+++|+.|++++|. +..++ .+..+++|+.|.+..+... .+..+..+++
T Consensus 103 ~~l~~L~~L~l~~~~-~~~~~-~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~~L~l~~n~l~-----~l~~l~~l~~ 173 (199)
T d2omxa2 103 ANLTNLTGLTLFNNQ-ITDID-PLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLNFSSNQVT-----DLKPLANLTT 173 (199)
T ss_dssp TTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCCC-----CCGGGTTCTT
T ss_pred ccccccccccccccc-ccccc-ccchhhhhHHhhhhhhh-hcccc-ccccccccccccccccccc-----CCccccCCCC
Confidence 899999999999988 44444 48889999999999984 44544 4778889999988776554 3345777888
Q ss_pred CCCceecCcccCCChhhhhHhhccCCCCCCeE
Q 010462 267 LRDCRIRGLGDVSDAGEARRAELEKKKSLLKL 298 (510)
Q Consensus 267 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L 298 (510)
|+.|++++.. +.+. ..+..+++|++|
T Consensus 174 L~~L~ls~N~-i~~i-----~~l~~L~~L~~L 199 (199)
T d2omxa2 174 LERLDISSNK-VSDI-----SVLAKLTNLESL 199 (199)
T ss_dssp CCEEECCSSC-CCCC-----GGGGGCTTCSEE
T ss_pred CCEEECCCCC-CCCC-----ccccCCCCCCcC
Confidence 8888888753 3332 235566777664
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.9e-14 Score=128.17 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=44.5
Q ss_pred CccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCcCCC--CCCCCccceeeccCccccEEecccccCCCCCCCC
Q 010462 335 NLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEHLPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDG 412 (510)
Q Consensus 335 ~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 412 (510)
.++.|.+.++.... ++ ......++++.+....+..++.+|. +..+++|++|+|++|. ++.++...
T Consensus 154 ~l~~L~l~~n~l~~--i~-~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~--------- 220 (242)
T d1xwdc1 154 ESVILWLNKNGIQE--IH-NCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYG--------- 220 (242)
T ss_dssp SCEEEECCSSCCCE--EC-TTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSS---------
T ss_pred cceeeecccccccc--cc-cccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCHHH---------
Confidence 45566666665554 44 2223344555554333335555554 6777888888887766 55554322
Q ss_pred Cccccccccccccccccc
Q 010462 413 SSVIAFPKLKHLTFWVMN 430 (510)
Q Consensus 413 ~~~~~~~~L~~L~l~~~~ 430 (510)
+..+++|+.+++.++.
T Consensus 221 --~~~l~~L~~l~~~~l~ 236 (242)
T d1xwdc1 221 --LENLKKLRARSTYNLK 236 (242)
T ss_dssp --CTTCCEEESSSEESSS
T ss_pred --HcCCcccccCcCCCCC
Confidence 2355666666655544
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=4.4e-15 Score=135.29 Aligned_cols=197 Identities=18% Similarity=0.210 Sum_probs=98.8
Q ss_pred ccccccccccccccCccceEeccCCCCccc--cchhhhcccccceeccCCCCccccCchhhhccccCceeecCCCccccc
Q 010462 152 TNFIKKIPTNIEKLLHLKYLSLFGQKKIEK--LPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRY 229 (510)
Q Consensus 152 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~ 229 (510)
...+...........+|++|++++|. +.. ++..+..+++|++|++++|......+..+.++++|++|++++|..+..
T Consensus 32 ~~~~~~~~~~~~~~~~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd 110 (284)
T d2astb2 32 RSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE 110 (284)
T ss_dssp TCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH
T ss_pred ccccccchhhhccCCCCCEEECCCCc-cCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccc
Confidence 44333332333445677777777776 332 344456677777777777764445556667777777777777643321
Q ss_pred --ccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhc-cCCCCCCeEEEEecCCC
Q 010462 230 --LPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAEL-EKKKSLLKLGLHFGHSR 306 (510)
Q Consensus 230 --~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~ 306 (510)
+......+++|++| ++++|..+.+ +.....+ ...+.|+.|+++++...
T Consensus 111 ~~l~~l~~~~~~L~~L---------------------------~ls~c~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~ 161 (284)
T d2astb2 111 FALQTLLSSCSRLDEL---------------------------NLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKN 161 (284)
T ss_dssp HHHHHHHHHCTTCCEE---------------------------ECCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred cccchhhHHHHhcccc---------------------------cccccccccc--ccchhhhcccccccchhhhcccccc
Confidence 11111223333333 3333322221 1111111 12345666665543200
Q ss_pred CCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhHHhhhhcccceeccCccCCCc--CCCCCCCCc
Q 010462 307 DGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISWFMSLTNLRFLFLFGWRNCEH--LPPLGKLPS 384 (510)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~--l~~~~~l~~ 384 (510)
.....+......+++|++|++++|...++... ..+..+++|++|++++|..+.+ +..++.+|+
T Consensus 162 --------------i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~-~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~ 226 (284)
T d2astb2 162 --------------LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226 (284)
T ss_dssp --------------SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred --------------cccccccccccccccccccccccccCCCchhh-hhhcccCcCCEEECCCCCCCChHHHHHHhcCCC
Confidence 00111222223456677777766554332122 3455667777777777654432 222566677
Q ss_pred cceeeccCc
Q 010462 385 LEYLEIEGM 393 (510)
Q Consensus 385 L~~L~L~~~ 393 (510)
|+.|++.+|
T Consensus 227 L~~L~l~~~ 235 (284)
T d2astb2 227 LKTLQVFGI 235 (284)
T ss_dssp CCEEECTTS
T ss_pred CCEEeeeCC
Confidence 777777665
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=2.3e-13 Score=106.43 Aligned_cols=100 Identities=19% Similarity=0.300 Sum_probs=79.9
Q ss_pred cEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccc
Q 010462 112 RSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYN 191 (510)
Q Consensus 112 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 191 (510)
|+|++++|++ .. ++. +..+++|++|+++ +|.+..+|..++.+++|++|++++|. ++.+|. +..+++
T Consensus 1 R~L~Ls~n~l---~~-l~~-l~~l~~L~~L~ls-------~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~~-~~~l~~ 66 (124)
T d1dcea3 1 RVLHLAHKDL---TV-LCH-LEQLLLVTHLDLS-------HNRLRALPPALAALRCLEVLQASDNA-LENVDG-VANLPR 66 (124)
T ss_dssp SEEECTTSCC---SS-CCC-GGGGTTCCEEECC-------SSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-GTTCSS
T ss_pred CEEEcCCCCC---CC-Ccc-cccCCCCCEEECC-------CCccCcchhhhhhhhccccccccccc-ccccCc-cccccc
Confidence 5788888874 33 333 7888888999998 88888888888888889999998888 788875 888889
Q ss_pred cceeccCCCCccccCc--hhhhccccCceeecCCCcc
Q 010462 192 LERLNVDHCKNLRELP--RGIGKLRKLMYLHNEGTDS 226 (510)
Q Consensus 192 L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~ 226 (510)
|++|++++|. +..+| ..++.+++|++|++++|..
T Consensus 67 L~~L~l~~N~-i~~~~~~~~l~~~~~L~~L~l~~N~i 102 (124)
T d1dcea3 67 LQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSL 102 (124)
T ss_dssp CCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred cCeEECCCCc-cCCCCCchhhcCCCCCCEEECCCCcC
Confidence 9999998888 66665 3577888889999888843
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.3e-13 Score=113.42 Aligned_cols=125 Identities=21% Similarity=0.151 Sum_probs=95.2
Q ss_pred CCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchh-
Q 010462 107 GLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPET- 185 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~- 185 (510)
++.++|.|++++|+ +.. ++..+..+++|++|+++ +|.+..++ .+..+++|++|++++|. +..+|..
T Consensus 16 n~~~lr~L~L~~n~---I~~-i~~~~~~l~~L~~L~Ls-------~N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~ 82 (162)
T d1a9na_ 16 NAVRDRELDLRGYK---IPV-IENLGATLDQFDAIDFS-------DNEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGL 82 (162)
T ss_dssp CTTSCEEEECTTSC---CCS-CCCGGGGTTCCSEEECC-------SSCCCEEC-CCCCCSSCCEEECCSSC-CCEECSCH
T ss_pred CcCcCcEEECCCCC---CCc-cCccccccccCCEEECC-------CCCCCccC-CcccCcchhhhhccccc-ccCCCccc
Confidence 67788999999998 444 34446778899999999 88888884 57888999999999998 7777665
Q ss_pred hhcccccceeccCCCCccccCch--hhhccccCceeecCCCcccccccc----cccCcccccccCcE
Q 010462 186 LCELYNLERLNVDHCKNLRELPR--GIGKLRKLMYLHNEGTDSLRYLPA----GIGELIRLRSVRKF 246 (510)
Q Consensus 186 ~~~l~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~l~ 246 (510)
+..+++|++|++++|. +..++. .+..+++|++|++++|.. ...|. .+..+++|+.|+..
T Consensus 83 ~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i-~~~~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 83 DQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp HHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTE
T ss_pred cccccccccceecccc-ccccccccccccccccchhhcCCCcc-ccccchHHHHHHHCCCcCeeCCC
Confidence 4578999999999988 666653 477889999999999843 44442 35666777776644
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=1.3e-13 Score=107.83 Aligned_cols=101 Identities=22% Similarity=0.196 Sum_probs=85.6
Q ss_pred eEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcccccceeccCCCCccccCchhhhccccCce
Q 010462 139 RALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRELPRGIGKLRKLMY 218 (510)
Q Consensus 139 ~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 218 (510)
|+|+++ ++.+..++. +.++.+|++|++++|. ++.+|..++.+++|++|++++|. ++.+|. +.++++|++
T Consensus 1 R~L~Ls-------~n~l~~l~~-l~~l~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N~-i~~l~~-~~~l~~L~~ 69 (124)
T d1dcea3 1 RVLHLA-------HKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVDG-VANLPRLQE 69 (124)
T ss_dssp SEEECT-------TSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCE
T ss_pred CEEEcC-------CCCCCCCcc-cccCCCCCEEECCCCc-cCcchhhhhhhhccccccccccc-ccccCc-cccccccCe
Confidence 689999 999998874 8999999999999999 89999889999999999999998 788875 999999999
Q ss_pred eecCCCccccccc--ccccCcccccccCcEEEeCc
Q 010462 219 LHNEGTDSLRYLP--AGIGELIRLRSVRKFVVGGG 251 (510)
Q Consensus 219 L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~ 251 (510)
|++++|. +..+| ..++.+++|+.|++.++...
T Consensus 70 L~l~~N~-i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 70 LLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp EECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred EECCCCc-cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 9999994 44444 34677788888877665543
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=3.1e-14 Score=129.54 Aligned_cols=205 Identities=14% Similarity=0.107 Sum_probs=112.3
Q ss_pred cceEeccCCCCccccchhhhcccccceeccCCCCcccc-CchhhhccccCceeecCCCcccccccccccCcccccccCcE
Q 010462 168 LKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKNLRE-LPRGIGKLRKLMYLHNEGTDSLRYLPAGIGELIRLRSVRKF 246 (510)
Q Consensus 168 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 246 (510)
+..+.+..+. +...........+|++||+++|..... ++..+.++++|++|++++|......+..+++++
T Consensus 25 ~~~lrl~~~~-~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~-------- 95 (284)
T d2astb2 25 VIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS-------- 95 (284)
T ss_dssp CSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT--------
T ss_pred ceEeeccccc-cccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCC--------
Confidence 4455555444 333223344556788888888763322 444466788888888888743333333344444
Q ss_pred EEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhh
Q 010462 247 VVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERL 326 (510)
Q Consensus 247 ~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (510)
+|+.|+++++..+++ .........+++|++|++++|.. . .....
T Consensus 96 -------------------~L~~L~Ls~c~~itd--~~l~~l~~~~~~L~~L~ls~c~~------------~---~~~~~ 139 (284)
T d2astb2 96 -------------------NLVRLNLSGCSGFSE--FALQTLLSSCSRLDELNLSWCFD------------F---TEKHV 139 (284)
T ss_dssp -------------------TCSEEECTTCBSCCH--HHHHHHHHHCTTCCEEECCCCTT------------C---CHHHH
T ss_pred -------------------CCcCccccccccccc--cccchhhHHHHhccccccccccc------------c---ccccc
Confidence 444455544444432 22223345678899999887641 0 01111
Q ss_pred hccC-CCCCCccEEEEeecCC--ccCCCchhHHhhhhcccceeccCccCCCc--CCCCCCCCccceeeccCccccEEecc
Q 010462 327 LEAL-GPPPNLKKLRIDEYRG--RRNVVPISWFMSLTNLRFLFLFGWRNCEH--LPPLGKLPSLEYLEIEGMKSVKRVGN 401 (510)
Q Consensus 327 ~~~l-~~~~~L~~L~l~~~~~--~~~~~p~~~~~~l~~L~~L~L~~~~~~~~--l~~~~~l~~L~~L~L~~~~~l~~~~~ 401 (510)
...+ ..+++|+.|+++++.. ....+. ....++++|++|++++|...++ +..++.+++|++|+|++|..+.....
T Consensus 140 ~~~~~~~~~~L~~L~l~~~~~~i~~~~l~-~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l 218 (284)
T d2astb2 140 QVAVAHVSETITQLNLSGYRKNLQKSDLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 218 (284)
T ss_dssp HHHHHHSCTTCCEEECCSCGGGSCHHHHH-HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred hhhhcccccccchhhhccccccccccccc-ccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHH
Confidence 1111 2346788888887532 111122 3345678888888888765542 33366777788888877765432111
Q ss_pred cccCCCCCCCCCcccccccccccccccc
Q 010462 402 EFLGVESDTDGSSVIAFPKLKHLTFWVM 429 (510)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 429 (510)
. .+..+|+|+.|++.+|
T Consensus 219 ---~--------~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 219 ---L--------ELGEIPTLKTLQVFGI 235 (284)
T ss_dssp ---G--------GGGGCTTCCEEECTTS
T ss_pred ---H--------HHhcCCCCCEEeeeCC
Confidence 0 1235666677666665
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=3.8e-13 Score=119.48 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=77.4
Q ss_pred eEEEeccccccccccccccccccccccCccceEeccCCCCccccch-hhhcccccceeccCCCCccccCch-hhhccccC
Q 010462 139 RALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPR-GIGKLRKL 216 (510)
Q Consensus 139 ~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L 216 (510)
++++.+ +..+..+|..+. .++++|++++|. ++.+|. .|.++++|++|++++|.....+|. .+..++++
T Consensus 11 ~~i~c~-------~~~l~~iP~~l~--~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l 80 (242)
T d1xwdc1 11 RVFLCQ-------ESKVTEIPSDLP--RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80 (242)
T ss_dssp SEEEEE-------SCSCSSCCSCSC--SCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTC
T ss_pred CEEEEe-------CCCCCCcCCCCC--CCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeecccccccccc
Confidence 678887 777888887664 589999999998 888876 578899999999999985554543 46778899
Q ss_pred ceeecCCCcccc-cccccccCcccccccCcEEEeCc
Q 010462 217 MYLHNEGTDSLR-YLPAGIGELIRLRSVRKFVVGGG 251 (510)
Q Consensus 217 ~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~ 251 (510)
+++.+..+..+. ..+..+..+++|+.+.+..+...
T Consensus 81 ~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~ 116 (242)
T d1xwdc1 81 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 116 (242)
T ss_dssp CEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred ccccccccccccccccccccccccccccccchhhhc
Confidence 998876644443 34455777888888887765543
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=9.9e-13 Score=108.11 Aligned_cols=123 Identities=20% Similarity=0.142 Sum_probs=103.8
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccccc
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTN 161 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~ 161 (510)
.++|.|++.++.+..++..+. .+++|+.|++++|. +.. ++. |..+++|++|+++ +|.+..+|..
T Consensus 18 ~~lr~L~L~~n~I~~i~~~~~----~l~~L~~L~Ls~N~---i~~-l~~-~~~l~~L~~L~ls-------~N~i~~l~~~ 81 (162)
T d1a9na_ 18 VRDRELDLRGYKIPVIENLGA----TLDQFDAIDFSDNE---IRK-LDG-FPLLRRLKTLLVN-------NNRICRIGEG 81 (162)
T ss_dssp TSCEEEECTTSCCCSCCCGGG----GTTCCSEEECCSSC---CCE-ECC-CCCCSSCCEEECC-------SSCCCEECSC
T ss_pred CcCcEEECCCCCCCccCcccc----ccccCCEEECCCCC---CCc-cCC-cccCcchhhhhcc-------cccccCCCcc
Confidence 678999999999987765444 78999999999998 444 333 8899999999999 9999999766
Q ss_pred c-cccCccceEeccCCCCccccch--hhhcccccceeccCCCCccccCch----hhhccccCceeecC
Q 010462 162 I-EKLLHLKYLSLFGQKKIEKLPE--TLCELYNLERLNVDHCKNLRELPR----GIGKLRKLMYLHNE 222 (510)
Q Consensus 162 i-~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~----~~~~l~~L~~L~l~ 222 (510)
+ ..+++|++|++++|. +..++. .+..+++|++|++++|+ +...|. .+..+++|++||-.
T Consensus 82 ~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 82 LDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp HHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred ccccccccccceecccc-ccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCC
Confidence 4 569999999999999 888764 57889999999999998 777774 47889999999843
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=3.4e-14 Score=139.08 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=78.4
Q ss_pred CceeEEEEEeecCCCccccccccccCCCCccEEEeccCCcCccc-cchhHhhhcCCceeEEEecccccccccccccc---
Q 010462 82 TKILHLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSN-EILPQLFDKLTCLRALKLEVREQGLYTNFIKK--- 157 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--- 157 (510)
.+++.|+++++.+.. ..+..-++.++++++|.|.+|.+.... ..+..++..+++|++|+|+ +|.+..
T Consensus 2 ~~l~~ld~~~~~i~~--~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs-------~N~i~~~~~ 72 (460)
T d1z7xw1 2 LDIQSLDIQCEELSD--ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR-------SNELGDVGV 72 (460)
T ss_dssp EEEEEEEEESCCCCH--HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT-------TCCCHHHHH
T ss_pred CCCCEEEeeCCcCCh--HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECc-------CCcCChHHH
Confidence 568889999888874 222222348899999999999742211 1245667889999999999 777643
Q ss_pred --ccccccc-cCccceEeccCCCCccc-----cchhhhcccccceeccCCCC
Q 010462 158 --IPTNIEK-LLHLKYLSLFGQKKIEK-----LPETLCELYNLERLNVDHCK 201 (510)
Q Consensus 158 --lp~~i~~-l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~L~~~~ 201 (510)
+...+.. ..+|++|++++|. ++. ++..+..+++|++|++++|.
T Consensus 73 ~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 73 HCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHHHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence 2333332 3579999999998 654 45567788999999999987
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.26 E-value=1.5e-13 Score=117.40 Aligned_cols=106 Identities=24% Similarity=0.255 Sum_probs=80.3
Q ss_pred cCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchh
Q 010462 106 KGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPET 185 (510)
Q Consensus 106 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~ 185 (510)
..+++|+.|++++|. +.. ++. +..+++|++|+++ +|.+..+|..+..+++|++|++++|. ++.++.
T Consensus 45 ~~L~~L~~L~Ls~n~---I~~-i~~-l~~l~~L~~L~Ls-------~N~i~~i~~~~~~~~~L~~L~l~~N~-i~~l~~- 110 (198)
T d1m9la_ 45 STLKACKHLALSTNN---IEK-ISS-LSGMENLRILSLG-------RNLIKKIENLDAVADTLEELWISYNQ-IASLSG- 110 (198)
T ss_dssp HHTTTCCEEECSEEE---ESC-CCC-HHHHTTCCEEECC-------EEEECSCSSHHHHHHHCCEEECSEEE-CCCHHH-
T ss_pred hcccccceeECcccC---CCC-ccc-ccCCccccChhhc-------cccccccccccccccccccccccccc-cccccc-
Confidence 378888888888887 444 332 7788888888888 88888887655556778888888887 777754
Q ss_pred hhcccccceeccCCCCccccCc--hhhhccccCceeecCCCcc
Q 010462 186 LCELYNLERLNVDHCKNLRELP--RGIGKLRKLMYLHNEGTDS 226 (510)
Q Consensus 186 ~~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~ 226 (510)
+..+++|++|++++|. +..++ ..+..+++|++|++++|..
T Consensus 111 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 111 IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred ccccccccccccccch-hccccccccccCCCccceeecCCCcc
Confidence 7788888888888887 66555 3477888888888888743
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.24 E-value=8.4e-12 Score=106.09 Aligned_cols=124 Identities=23% Similarity=0.226 Sum_probs=91.5
Q ss_pred EEEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-cccccc
Q 010462 86 HLMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEK 164 (510)
Q Consensus 86 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~ 164 (510)
.+...++....+|..++ ++++.|++++|++.. .+.+..|..+++|+.|+++ ++.+..+ +..+..
T Consensus 12 ~v~Cs~~~L~~iP~~lp------~~l~~L~Ls~N~i~~--~~~~~~f~~l~~L~~L~L~-------~N~i~~~~~~~~~~ 76 (192)
T d1w8aa_ 12 TVDCTGRGLKEIPRDIP------LHTTELLLNDNELGR--ISSDGLFGRLPHLVKLELK-------RNQLTGIEPNAFEG 76 (192)
T ss_dssp EEECTTSCCSSCCSCCC------TTCSEEECCSCCCCS--BCCSCSGGGCTTCCEEECC-------SSCCCCBCTTTTTT
T ss_pred EEEEeCCCcCccCCCCC------CCCCEEEeCCCCCcc--cccccccCCCceEeeeecc-------cccccccccccccc
Confidence 44555566666666543 678888999887321 2234557888899999998 8887766 566777
Q ss_pred cCccceEeccCCCCccccch-hhhcccccceeccCCCCccccCch-hhhccccCceeecCCCcc
Q 010462 165 LLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPR-GIGKLRKLMYLHNEGTDS 226 (510)
Q Consensus 165 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~ 226 (510)
+++|++|++++|+ +..+|. +|.++++|++|+|++|. +..+|. .+..+++|++|++++|..
T Consensus 77 ~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~ 138 (192)
T d1w8aa_ 77 ASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCB
T ss_pred ccccceeeecccc-ccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCccccccccccccc
Confidence 8889999999888 777654 57888999999999888 666544 467888899999888854
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.22 E-value=1.7e-11 Score=104.18 Aligned_cols=128 Identities=20% Similarity=0.144 Sum_probs=99.3
Q ss_pred CceeEEEEEeecCCC-ccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccccccccc-
Q 010462 82 TKILHLMLTLHRGAS-VPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIP- 159 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp- 159 (510)
..+++|.+.++.+.. .+.. .|..+++|+.|++++|. +..+.+..|..++.|++|+++ +|.+..+|
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~---~f~~l~~L~~L~L~~N~---i~~~~~~~~~~~~~L~~L~Ls-------~N~l~~l~~ 95 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQ---LTGIEPNAFEGASHIQELQLG-------ENKIKEISN 95 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECC-------SCCCCEECS
T ss_pred CCCCEEEeCCCCCccccccc---ccCCCceEeeeeccccc---cccccccccccccccceeeec-------cccccccCH
Confidence 789999999999864 2222 23489999999999998 555577889999999999999 99999995
Q ss_pred ccccccCccceEeccCCCCccccch-hhhcccccceeccCCCCccccCchhhhccccCceeecCCC
Q 010462 160 TNIEKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGT 224 (510)
Q Consensus 160 ~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 224 (510)
..|.++++|++|+|++|. ++.+|. +|..+++|++|+|++|. +...+...+-...++.+.+..+
T Consensus 96 ~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~-~~~~~~~~~~~~~l~~~~l~~~ 159 (192)
T d1w8aa_ 96 KMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNP-FNCNCHLAWFAEWLRKKSLNGG 159 (192)
T ss_dssp SSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCC-BCCSGGGHHHHHHHHHHCCSGG
T ss_pred HHHhCCCcccccccCCcc-ccccCHHHhcCCcccccccccccc-cccccchHHHhhhhhhhcccCC
Confidence 568899999999999999 777755 57899999999999998 4433332222233455555544
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.16 E-value=6.4e-13 Score=113.30 Aligned_cols=127 Identities=20% Similarity=0.166 Sum_probs=98.2
Q ss_pred CccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccchhhhcc
Q 010462 110 GLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLPETLCEL 189 (510)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l 189 (510)
.++.+.+.+.. ..+.. ++..+..+++|++|+++ ++.+..++ .+..+++|++|++++|. ++.+|.....+
T Consensus 24 ~~~~~~l~~~~-~~i~~-l~~sl~~L~~L~~L~Ls-------~n~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~ 92 (198)
T d1m9la_ 24 EAEKVELHGMI-PPIEK-MDATLSTLKACKHLALS-------TNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVA 92 (198)
T ss_dssp TCSCEECCBCC-TTCCC-CHHHHHHTTTCCEEECS-------EEEESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHH
T ss_pred ccceeeeeccc-Cchhh-hhhHHhcccccceeECc-------ccCCCCcc-cccCCccccChhhcccc-ccccccccccc
Confidence 34445555432 12333 56679999999999999 99999885 58899999999999998 88998766777
Q ss_pred cccceeccCCCCccccCchhhhccccCceeecCCCccccccc--ccccCcccccccCcEEEeC
Q 010462 190 YNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTDSLRYLP--AGIGELIRLRSVRKFVVGG 250 (510)
Q Consensus 190 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~ 250 (510)
++|++|++++|. +..++ .+..+++|++|++++|. +..++ ..++.+++|+.|++.++..
T Consensus 93 ~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 93 DTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHCCEEECSEEE-CCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred cccccccccccc-ccccc-cccccccccccccccch-hccccccccccCCCccceeecCCCcc
Confidence 899999999998 77765 48899999999999984 34444 3467788888888776543
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=5.5e-13 Score=130.32 Aligned_cols=343 Identities=17% Similarity=0.095 Sum_probs=187.5
Q ss_pred CCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccc-----cccccccccCccceEeccCCCCcccc-
Q 010462 109 RGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIK-----KIPTNIEKLLHLKYLSLFGQKKIEKL- 182 (510)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~~l- 182 (510)
.+|+.|+++++++.. ..+...+..++++|+|+|+ +|.+. .++..+..+++|++|+|++|. ++..
T Consensus 2 ~~l~~ld~~~~~i~~--~~~~~l~~~l~~l~~L~L~-------~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~ 71 (460)
T d1z7xw1 2 LDIQSLDIQCEELSD--ARWAELLPLLQQCQVVRLD-------DCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVG 71 (460)
T ss_dssp EEEEEEEEESCCCCH--HHHHHHHHHHTTCSEEEEE-------SSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHH
T ss_pred CCCCEEEeeCCcCCh--HHHHHHHHhCCCCCEEEeC-------CCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHH
Confidence 368999999998432 2245557889999999999 77654 445667789999999999998 6532
Q ss_pred ----chhhh-cccccceeccCCCCcccc-----CchhhhccccCceeecCCCccccccccccc-CcccccccCcEEEeCc
Q 010462 183 ----PETLC-ELYNLERLNVDHCKNLRE-----LPRGIGKLRKLMYLHNEGTDSLRYLPAGIG-ELIRLRSVRKFVVGGG 251 (510)
Q Consensus 183 ----p~~~~-~l~~L~~L~L~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L~l~~~~~~ 251 (510)
...+. ...+|++|++++|. ++. ++..+..+++|++|++++|.....-...+. .+..............
T Consensus 72 ~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~ 150 (460)
T d1z7xw1 72 VHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY 150 (460)
T ss_dssp HHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHhcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccc
Confidence 22222 23579999999998 433 456678899999999999853211000000 0000000000000000
Q ss_pred c-C----CccCcccccccccCCC-----------------------------ceecCcccCCChhhhhHhhccCCCCCCe
Q 010462 252 Y-D----RACSLGSLKKLNLLRD-----------------------------CRIRGLGDVSDAGEARRAELEKKKSLLK 297 (510)
Q Consensus 252 ~-~----~~~~~~~l~~l~~L~~-----------------------------l~i~~~~~~~~~~~~~~~~l~~~~~L~~ 297 (510)
. . .......+.....++. +....+.............+...+.++.
T Consensus 151 ~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 230 (460)
T d1z7xw1 151 CSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 230 (460)
T ss_dssp SCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCE
T ss_pred cccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccc
Confidence 0 0 0000001111111221 2222211111111222333445566677
Q ss_pred EEEEecCCCCCCcccccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCc--hhHHhhhhcccceeccCccCCCc
Q 010462 298 LGLHFGHSRDGDEERAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVP--ISWFMSLTNLRFLFLFGWRNCEH 375 (510)
Q Consensus 298 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p--~~~~~~l~~L~~L~L~~~~~~~~ 375 (510)
+.+..+... .................++.+++++|........ ..++...+.++.+++++|.....
T Consensus 231 l~~~~n~~~------------~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~ 298 (460)
T d1z7xw1 231 LALGSNKLG------------DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 298 (460)
T ss_dssp EECCSSBCH------------HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred cchhhcccc------------ccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 766655400 0001123344455667899999998876541000 02334677888888888854321
Q ss_pred ----CCC--CCCCCccceeeccCccccEEecccccCCCCCCCCCcccccccccccccccccccccccccccccccc-ccC
Q 010462 376 ----LPP--LGKLPSLEYLEIEGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKHLTFWVMNALEELDFETAIKREI-IIM 448 (510)
Q Consensus 376 ----l~~--~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~-~~l 448 (510)
+.. ....+.|+.+++++|. +.......... .....++|++|+++++. +..-.+. .++..+ ...
T Consensus 299 ~~~~l~~~l~~~~~~L~~l~l~~~~-l~~~~~~~l~~-------~~~~~~~L~~L~Ls~N~-i~~~g~~-~l~~~l~~~~ 368 (460)
T d1z7xw1 299 GARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSS-------VLAQNRFLLELQISNNR-LEDAGVR-ELCQGLGQPG 368 (460)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHH-------HHHHCSSCCEEECCSSB-CHHHHHH-HHHHHHTSTT
T ss_pred ccchhhccccccccccccccccccc-hhhhhhhhccc-------ccccccchhhhheeeec-ccCcccc-hhhhhhhccc
Confidence 111 2345689999999875 22111110000 01245689999998874 4321111 112222 245
Q ss_pred cccceeeeccCccc----ccCCcccCCCCCCcEEEEcCCc
Q 010462 449 PRLSSLTIWSCRKL----KALPDHLLQKTTLQKLHIRRCP 484 (510)
Q Consensus 449 ~~L~~L~l~~c~~l----~~lp~~~~~l~~L~~L~l~~c~ 484 (510)
+.|++|++++|..- ..++..+..+++|++|++++|+
T Consensus 369 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 408 (460)
T d1z7xw1 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408 (460)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCc
Confidence 77999999999542 1244456668999999999995
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.00 E-value=5e-11 Score=111.46 Aligned_cols=241 Identities=16% Similarity=0.081 Sum_probs=118.7
Q ss_pred cCCCCccEEEeccCCcCcc-ccchhHhhhcCCceeEEEeccccccccccccc-----------cccccccccCccceEec
Q 010462 106 KGLRGLRSLLVESGEYSWS-NEILPQLFDKLTCLRALKLEVREQGLYTNFIK-----------KIPTNIEKLLHLKYLSL 173 (510)
Q Consensus 106 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----------~lp~~i~~l~~L~~L~l 173 (510)
.....++.|++++|.+... ...+...+...+.|+.|+++ ++... .+.+.+..+++|+.|++
T Consensus 28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~-------~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L 100 (344)
T d2ca6a1 28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS-------DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 100 (344)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECC-------SCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECC-------CCcccccccccchHHHHHHHHHhhCCCcccccc
Confidence 3677777888877752111 01133345666777777776 33221 12233455677777777
Q ss_pred cCCCCccc-----cchhhhcccccceeccCCCCcccc----Cchh---------hhccccCceeecCCCcccc----ccc
Q 010462 174 FGQKKIEK-----LPETLCELYNLERLNVDHCKNLRE----LPRG---------IGKLRKLMYLHNEGTDSLR----YLP 231 (510)
Q Consensus 174 ~~~~~~~~-----lp~~~~~l~~L~~L~L~~~~~~~~----lp~~---------~~~l~~L~~L~l~~~~~~~----~~p 231 (510)
++|. ++. +...+...++|+.|++++|..... +... ....+.|+.+++++|.... .+.
T Consensus 101 ~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~ 179 (344)
T d2ca6a1 101 SDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179 (344)
T ss_dssp CSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred cccc-cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccccc
Confidence 7776 433 334455667777777777752111 0000 1234556666666553211 111
Q ss_pred ccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhhHhhccCCCCCCeEEEEecCCCCCCcc
Q 010462 232 AGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEARRAELEKKKSLLKLGLHFGHSRDGDEE 311 (510)
Q Consensus 232 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 311 (510)
..+...+.|+.|++..+.... ..........+...++|+.|++++|.+
T Consensus 180 ~~l~~~~~L~~L~L~~n~i~~--------------------------~g~~~~l~~~l~~~~~L~~L~Ls~N~i------ 227 (344)
T d2ca6a1 180 KTFQSHRLLHTVKMVQNGIRP--------------------------EGIEHLLLEGLAYCQELKVLDLQDNTF------ 227 (344)
T ss_dssp HHHHHCTTCCEEECCSSCCCH--------------------------HHHHHHHHTTGGGCTTCCEEECCSSCC------
T ss_pred chhhhhhhhcccccccccccc--------------------------cccccchhhhhcchhhhcccccccccc------
Confidence 122233334443333222111 000111223455566777777766641
Q ss_pred cccCCCCcchhhHhhhccCCCCCCccEEEEeecCCccCCCchhH---Hh--hhhcccceeccCccCCCc----CCC-C-C
Q 010462 312 RAGRRENEEDEDERLLEALGPPPNLKKLRIDEYRGRRNVVPISW---FM--SLTNLRFLFLFGWRNCEH----LPP-L-G 380 (510)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~p~~~---~~--~l~~L~~L~L~~~~~~~~----l~~-~-~ 380 (510)
.......+...+..+++|++|++++|.+...... .. +. ..+.|++|++++|..... +.. + .
T Consensus 228 -------~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~-~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~ 299 (344)
T d2ca6a1 228 -------THLGSSALAIALKSWPNLRELGLNDCLLSARGAA-AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299 (344)
T ss_dssp -------HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH-HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH
T ss_pred -------cccccccccccccccccchhhhhhcCccCchhhH-HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHc
Confidence 1112234445566667777777777765431011 11 11 134577777777743221 111 2 2
Q ss_pred CCCccceeeccCcc
Q 010462 381 KLPSLEYLEIEGMK 394 (510)
Q Consensus 381 ~l~~L~~L~L~~~~ 394 (510)
++++|++|+|++|.
T Consensus 300 ~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 300 KMPDLLFLELNGNR 313 (344)
T ss_dssp HCTTCCEEECTTSB
T ss_pred cCCCCCEEECCCCc
Confidence 45677888887765
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.95 E-value=8.4e-11 Score=109.89 Aligned_cols=244 Identities=15% Similarity=0.061 Sum_probs=142.6
Q ss_pred CceeEEEEEeecCCC-ccccccccccCCCCccEEEeccCCcCccccc-------hhHhhhcCCceeEEEecccccccccc
Q 010462 82 TKILHLMLTLHRGAS-VPIPIWDNVKGLRGLRSLLVESGEYSWSNEI-------LPQLFDKLTCLRALKLEVREQGLYTN 153 (510)
Q Consensus 82 ~~~~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------~~~~~~~l~~L~~L~l~~~~~~~~~~ 153 (510)
..++.|.+.++.+.. ....+...+...++|+.+.+.++........ +...+..+++|+.|+++ +|
T Consensus 31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~-------~n 103 (344)
T d2ca6a1 31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS-------DN 103 (344)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC-------SC
T ss_pred CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc-------cc
Confidence 668889988876643 2233333455889999999988753222211 23446678999999999 66
Q ss_pred cccc-----ccccccccCccceEeccCCCCcccc-----chh---------hhcccccceeccCCCCccc----cCchhh
Q 010462 154 FIKK-----IPTNIEKLLHLKYLSLFGQKKIEKL-----PET---------LCELYNLERLNVDHCKNLR----ELPRGI 210 (510)
Q Consensus 154 ~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~l-----p~~---------~~~l~~L~~L~L~~~~~~~----~lp~~~ 210 (510)
.+.. +...+...++|++|++++|. ++.- ... ....+.|+.|+++++.... .+...+
T Consensus 104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l 182 (344)
T d2ca6a1 104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182 (344)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred ccccccccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence 6543 44556678999999999997 4321 111 1346789999999887322 244456
Q ss_pred hccccCceeecCCCccccc-----ccccccCcccccccCcEEEeCccCCccCcccccccccCCCceecCcccCCChhhhh
Q 010462 211 GKLRKLMYLHNEGTDSLRY-----LPAGIGELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRDCRIRGLGDVSDAGEAR 285 (510)
Q Consensus 211 ~~l~~L~~L~l~~~~~~~~-----~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~i~~~~~~~~~~~~~ 285 (510)
...+.|+.|++++|..... +...+..+++|+.|++..+.... ......
T Consensus 183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~---------------------------~g~~~L 235 (344)
T d2ca6a1 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH---------------------------LGSSAL 235 (344)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH---------------------------HHHHHH
T ss_pred hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccc---------------------------cccccc
Confidence 6788999999999854221 22334445555555544332211 011223
Q ss_pred HhhccCCCCCCeEEEEecCCCCCCcccccCCCCcchhhHhhhccCC--CCCCccEEEEeecCCccCCCc--hhHH-hhhh
Q 010462 286 RAELEKKKSLLKLGLHFGHSRDGDEERAGRRENEEDEDERLLEALG--PPPNLKKLRIDEYRGRRNVVP--ISWF-MSLT 360 (510)
Q Consensus 286 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~p--~~~~-~~l~ 360 (510)
...+..+++|++|++++|.. .+.....+...+. ..+.|++|++++|.+....+. ...+ .+++
T Consensus 236 ~~~l~~~~~L~~L~Ls~n~i-------------~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~ 302 (344)
T d2ca6a1 236 AIALKSWPNLRELGLNDCLL-------------SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302 (344)
T ss_dssp HHHGGGCTTCCEEECTTCCC-------------CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred cccccccccchhhhhhcCcc-------------CchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCC
Confidence 34455566777777766641 1112233333332 235677777777765431111 0112 1456
Q ss_pred cccceeccCccCC
Q 010462 361 NLRFLFLFGWRNC 373 (510)
Q Consensus 361 ~L~~L~L~~~~~~ 373 (510)
+|++|+|++|...
T Consensus 303 ~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 303 DLLFLELNGNRFS 315 (344)
T ss_dssp TCCEEECTTSBSC
T ss_pred CCCEEECCCCcCC
Confidence 7777777777543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1.1e-09 Score=88.90 Aligned_cols=102 Identities=17% Similarity=0.176 Sum_probs=63.1
Q ss_pred ccEEEeccCCcCccccchhHhhhcCCceeEEEecccccccccc-cccccc-ccccccCccceEeccCCCCcccc-chhhh
Q 010462 111 LRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTN-FIKKIP-TNIEKLLHLKYLSLFGQKKIEKL-PETLC 187 (510)
Q Consensus 111 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l-p~~~~ 187 (510)
...++..++. ..+ .|..+..+++|+.|+++ ++ .+..++ ..|.++++|+.|++++|+ ++.+ |.+|.
T Consensus 10 ~~~l~c~~~~---~~~-~p~~l~~l~~l~~L~l~-------~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~ 77 (156)
T d2ifga3 10 SSGLRCTRDG---ALD-SLHHLPGAENLTELYIE-------NQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFH 77 (156)
T ss_dssp SSCEECCSSC---CCT-TTTTSCSCSCCSEEECC-------SCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGG
T ss_pred CCeEEecCCC---Ccc-CcccccCccccCeeecC-------CCccccccCchhhccccccCcceeeccc-cCCccccccc
Confidence 3445555544 222 33345666677777775 44 366663 456667777777777776 5665 34566
Q ss_pred cccccceeccCCCCccccCchhhhccccCceeecCCCc
Q 010462 188 ELYNLERLNVDHCKNLRELPRGIGKLRKLMYLHNEGTD 225 (510)
Q Consensus 188 ~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 225 (510)
.+++|++|+|++|+ ++.+|..+....+|++|++++|.
T Consensus 78 ~l~~L~~L~Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 78 FTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNP 114 (156)
T ss_dssp SCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccccccceeccCCC-CcccChhhhccccccccccCCCc
Confidence 77777777777777 66666665555567777777764
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=3.1e-09 Score=86.15 Aligned_cols=102 Identities=18% Similarity=0.117 Sum_probs=83.9
Q ss_pred EEEEeecCCCccccccccccCCCCccEEEeccCCcCccccchhHhhhcCCceeEEEeccccccccccccccc-ccccccc
Q 010462 87 LMLTLHRGASVPIPIWDNVKGLRGLRSLLVESGEYSWSNEILPQLFDKLTCLRALKLEVREQGLYTNFIKKI-PTNIEKL 165 (510)
Q Consensus 87 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-p~~i~~l 165 (510)
+...++.....+..+. .+++|+.|.+.++. .+..+.+..|..+++|+.|+++ +|.+..+ |..|..+
T Consensus 13 l~c~~~~~~~~p~~l~----~l~~l~~L~l~~n~--~l~~i~~~~f~~l~~L~~L~Ls-------~N~l~~i~~~~f~~l 79 (156)
T d2ifga3 13 LRCTRDGALDSLHHLP----GAENLTELYIENQQ--HLQHLELRDLRGLGELRNLTIV-------KSGLRFVAPDAFHFT 79 (156)
T ss_dssp EECCSSCCCTTTTTSC----SCSCCSEEECCSCS--SCCEECGGGSCSCCCCSEEECC-------SSCCCEECTTGGGSC
T ss_pred EEecCCCCccCccccc----CccccCeeecCCCc--cccccCchhhccccccCcceee-------ccccCCccccccccc
Confidence 4455555555666666 89999999998663 1555566779999999999999 9999999 5678899
Q ss_pred CccceEeccCCCCccccchhhhcccccceeccCCCCc
Q 010462 166 LHLKYLSLFGQKKIEKLPETLCELYNLERLNVDHCKN 202 (510)
Q Consensus 166 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~ 202 (510)
++|++|+|++|+ ++.+|..+....+|+.|+|++|+.
T Consensus 80 ~~L~~L~Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 80 PRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp SCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred ccccceeccCCC-CcccChhhhccccccccccCCCcc
Confidence 999999999999 899988777667899999999983
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=8e-08 Score=78.16 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=29.2
Q ss_pred hhcCCceeEEEecccccccccccccccc---ccccccCccceEeccCCCCccccch-hhhcccccceeccCCCC
Q 010462 132 FDKLTCLRALKLEVREQGLYTNFIKKIP---TNIEKLLHLKYLSLFGQKKIEKLPE-TLCELYNLERLNVDHCK 201 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~lp---~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~ 201 (510)
+..++.|++|+++ +|.+..++ ..+..+++|++|++++|. ++.++. ...+..+|+.|++++|+
T Consensus 61 ~~~~~~L~~L~Ls-------~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Np 126 (162)
T d1koha1 61 EENIPELLSLNLS-------NNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNS 126 (162)
T ss_dssp HHHCTTCCCCCCC-------SSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTST
T ss_pred HHhCCCCCEeeCC-------CccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCC
Confidence 3445555555555 55544432 223345555555555555 444443 11222345555555554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=4.2e-07 Score=73.75 Aligned_cols=107 Identities=17% Similarity=0.073 Sum_probs=74.3
Q ss_pred hhcCCceeEEEeccccccccccccccccccccccCccceEeccCCCCccccc---hhhhcccccceeccCCCCccccCch
Q 010462 132 FDKLTCLRALKLEVREQGLYTNFIKKIPTNIEKLLHLKYLSLFGQKKIEKLP---ETLCELYNLERLNVDHCKNLRELPR 208 (510)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp---~~~~~l~~L~~L~L~~~~~~~~lp~ 208 (510)
+..+..+..+... ++....++....++++|++|++++|. ++.++ ..+..+++|+.|++++|. ++.++.
T Consensus 38 l~~~~~~~~l~~~-------~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~ 108 (162)
T d1koha1 38 LVAQNIDVVLNRR-------SSMAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE 108 (162)
T ss_dssp TTTTTCCCCTTSH-------HHHHHHHHHHHHHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGG
T ss_pred hhhccchhhcchh-------hhHhhhhHHHHHhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCc-cccchh
Confidence 4444455555555 44444454445578999999999999 77654 457789999999999999 777765
Q ss_pred -hhhccccCceeecCCCccccccc-------ccccCcccccccCcEE
Q 010462 209 -GIGKLRKLMYLHNEGTDSLRYLP-------AGIGELIRLRSVRKFV 247 (510)
Q Consensus 209 -~~~~l~~L~~L~l~~~~~~~~~p-------~~l~~l~~L~~L~l~~ 247 (510)
...+..+|+.|++++|....... ..+..+++|+.|+...
T Consensus 109 l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LDg~~ 155 (162)
T d1koha1 109 LDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHE 155 (162)
T ss_dssp HHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEETTEE
T ss_pred hhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEECcCC
Confidence 23345679999999996544332 2256688888887543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.34 E-value=0.00011 Score=59.19 Aligned_cols=109 Identities=11% Similarity=0.044 Sum_probs=61.7
Q ss_pred CCCCccEEEeccCCcCcccc--chhHhhhcCCceeEEEeccccccccccccc-----cccccccccCccceEeccCCCCc
Q 010462 107 GLRGLRSLLVESGEYSWSNE--ILPQLFDKLTCLRALKLEVREQGLYTNFIK-----KIPTNIEKLLHLKYLSLFGQKKI 179 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~ 179 (510)
+.+.|+.|+++++....... .+-.++...+.|++|+++ ++.+. .+.+.+...+.|++|++++|. +
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls-------~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i 84 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLA-------NTAISDSEARGLIELIETSPSLRVLNVESNF-L 84 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECT-------TSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-C
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecc-------ccccchhHHHHHhhhhhhcccccceeeehhh-c
Confidence 45777888887643111111 123335666778888887 55543 233445556777788887776 4
Q ss_pred cc-----cchhhhcccccceeccCCCCcccc--------CchhhhccccCceeecCCC
Q 010462 180 EK-----LPETLCELYNLERLNVDHCKNLRE--------LPRGIGKLRKLMYLHNEGT 224 (510)
Q Consensus 180 ~~-----lp~~~~~l~~L~~L~L~~~~~~~~--------lp~~~~~l~~L~~L~l~~~ 224 (510)
+. +-..+...+.|+.|++++|. ... +...+..-+.|+.|+++.+
T Consensus 85 ~~~g~~~l~~aL~~n~sL~~L~l~~n~-~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 85 TPELLARLLRSTLVTQSIVEFKADNQR-QSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCS-SCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred chHHHHHHHHHHHhCCcCCEEECCCCc-CCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 43 22334555667777777664 222 2333445566777766554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.02 E-value=0.00014 Score=58.71 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=62.6
Q ss_pred hhHhhhcCCceeEEEecccccccccc-ccc-----cccccccccCccceEeccCCCCccc-----cchhhhcccccceec
Q 010462 128 LPQLFDKLTCLRALKLEVREQGLYTN-FIK-----KIPTNIEKLLHLKYLSLFGQKKIEK-----LPETLCELYNLERLN 196 (510)
Q Consensus 128 ~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~-----~lp~~i~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~ 196 (510)
+.......+.|+.|+|+ ++ .+. .+-..+....+|++|++++|. ++. +...+...+.|+.|+
T Consensus 7 l~~l~~n~~~L~~L~L~-------~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~ 78 (167)
T d1pgva_ 7 INRLREDDTDLKEVNIN-------NMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLN 78 (167)
T ss_dssp HHHHHTTCSSCCEEECT-------TCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEE
T ss_pred HHHHHhCCCCCcEEEeC-------CCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhccccccee
Confidence 44445567899999998 53 232 244556677889999999998 553 334566678899999
Q ss_pred cCCCCcccc----CchhhhccccCceeecCCCc
Q 010462 197 VDHCKNLRE----LPRGIGKLRKLMYLHNEGTD 225 (510)
Q Consensus 197 L~~~~~~~~----lp~~~~~l~~L~~L~l~~~~ 225 (510)
+++|..... +-..+...+.|++|++++|.
T Consensus 79 L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 79 VESNFLTPELLARLLRSTLVTQSIVEFKADNQR 111 (167)
T ss_dssp CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred eehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence 999973221 33345667789999998773
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.73 E-value=0.00093 Score=53.52 Aligned_cols=110 Identities=15% Similarity=0.028 Sum_probs=56.6
Q ss_pred CCCCccEEEeccCCcCcccc--chhHhhhcCCceeEEEeccccccccccccc-----cccccccccCccceEeccCCCCc
Q 010462 107 GLRGLRSLLVESGEYSWSNE--ILPQLFDKLTCLRALKLEVREQGLYTNFIK-----KIPTNIEKLLHLKYLSLFGQKKI 179 (510)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~ 179 (510)
+.+.|+.|++.++....... .+-.++...++|+.|+++ ++.+. .+.+.+.....++.+++++|. +
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls-------~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~-~ 86 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV-------GTRSNDPVAFALAEMLKVNNTLKSLNVESNF-I 86 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT-------TSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-C
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeecc-------CCcccHHHHHHHHHHHhhcccchhhhhcccc-c
Confidence 45677777776532111111 123334566777777777 55432 233344556667777777666 3
Q ss_pred cc-----cchhhhcccccceeccC--CCCccc----cCchhhhccccCceeecCCC
Q 010462 180 EK-----LPETLCELYNLERLNVD--HCKNLR----ELPRGIGKLRKLMYLHNEGT 224 (510)
Q Consensus 180 ~~-----lp~~~~~l~~L~~L~L~--~~~~~~----~lp~~~~~l~~L~~L~l~~~ 224 (510)
+. +...+...++|+.++|+ +|.... .+...+.+.++|+.|++..+
T Consensus 87 ~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 87 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred cchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 32 22345556666655443 333111 23344556666677666554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.42 E-value=0.00063 Score=54.59 Aligned_cols=92 Identities=21% Similarity=0.196 Sum_probs=62.6
Q ss_pred cccchhHhhhcCCceeEEEecccccccccc-cc-----ccccccccccCccceEeccCCCCccc-----cchhhhccccc
Q 010462 124 SNEILPQLFDKLTCLRALKLEVREQGLYTN-FI-----KKIPTNIEKLLHLKYLSLFGQKKIEK-----LPETLCELYNL 192 (510)
Q Consensus 124 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~-----~~lp~~i~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L 192 (510)
+.+++.......+.|+.|+++ +. .+ ..+-..+...++|+.|++++|. ++. +-..+...+.+
T Consensus 5 i~~~l~~~~~~~~~L~~L~L~-------~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l 76 (166)
T d1io0a_ 5 VEETLKRIQNNDPDLEEVNLN-------NIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTL 76 (166)
T ss_dssp HHHHHHHHHTTCTTCCEEECT-------TCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHhcCCCCcEEEcC-------CCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccc
Confidence 444556656778999999998 53 23 2344556678899999999997 543 33446677889
Q ss_pred ceeccCCCCccc----cCchhhhccccCceeecCC
Q 010462 193 ERLNVDHCKNLR----ELPRGIGKLRKLMYLHNEG 223 (510)
Q Consensus 193 ~~L~L~~~~~~~----~lp~~~~~l~~L~~L~l~~ 223 (510)
+.+++++|.... .+...+...++|+.++++.
T Consensus 77 ~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l 111 (166)
T d1io0a_ 77 KSLNVESNFISGSGILALVEALQSNTSLIELRIDN 111 (166)
T ss_dssp CEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCC
T ss_pred hhhhhccccccchhHHHHHHHHHhCccccEEeecc
Confidence 999999887322 2334466778888766654
|