Citrus Sinensis ID: 010478

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51
Protein Sequence
MATCYVSICGLALDCSYMQLLSQSHHCRSPSTATVTSETQPILSQHKLLRLVITVLHSIFTVNYCIKSLSPATTAPHPYRWKANPPQSFAEMRKRPRNTPATREVKGEIVEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSNCISDPTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRTNYSFGCGNAKDCTKLREAKLRQGVELLVL
Secondary Structure (PSIPRED)
ccEEEEEEEccccccHHHHHHHccccccccccccccccccccccccccccEEEEcccccEEEEEccccccccccccccccccccccccHHHcccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccEEEcccccccccccHHHHHHHHHHHcccccEEEEEEEEcccccccHHHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccccEEEEEEEEEcHHHHHHHHcccccccEEEEEEcccccEEEEEEEcccEEEEEEEccccccEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEEEccccccccccccccccccEEEEEEcccEEEEEccccccccccEEEEEEEccccccHHHHHHHHHHcccccEEEEEEEcccccccccccccccccccccEEEEEEEEccccHHHHHHHHHHccccccEEEEEEcccccccccccccccHHHHHHccccEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccHcccHHHHHHHccccccccccccEEccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHcccEEEEEEEccccccccEEEEEEEEEEcccEccHHHcEEEEEEEEEccHHHHHHHHcccHHHEEEEEEcccccEEEEEEEcccEEEEEEEccccccEEEEEcccEEEEEEEcccccccEEEEcccccEEEEEEccccccHHHHHHHHHHHHHccEEEEEccccHEHHccccccccccEEEEEEEEcccccHHHHHHHHHHccccccEEEEEcccccccccccccccHHHHHHEEEEEEEcccccHHHHHHHHHHHHHHHHHcEEEEEccccccccHHHHHHHHcccccccccEEEEEc
Coil and Loop (DISEMBL)
MATCYVSICGLALDCSYMQLlsqshhcrspstatvtsetqpilsqHKLLRLVITVLHSIFTVNYCikslspattaphpyrwkanppqsfaemrkrprntpatreVKGEIVEDLMsllpddilINIISRLPLKEAAKTSVLSSRWKYLWTFTTVldfdgitessncisdptciDKVLqlhrgssinkFRLCLyskdlheseITNWVYSALSKRVQIFELElwprlknytFLENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFIlhncplldqlsvVRSETLVSLKVVGSAIQLKHLRISTCYRlneikistpnllsfkyfgpgqelklhienapqlvdisfRGVMLTRVRnvvgpitscfpqlktleldSCDELYAQFsehelpnlthLHLRVATLNRESLLGLASIMKACPFLQTLIVQFdyngykvgrrrkvprhshqHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRtnysfgcgnakdcTKLREAKLRQGVELLVL
Flexible Loop (DISEMBL)
MATCYVSICGLALDCSYMQLLSQSHHCRSPSTATVTSETQPILSQHKLLRLVITVLHSIFTVNYCIKSLspattaphpyrWKANppqsfaemrkrprntpatrevKGEIVEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSNCISDPTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKvvgsaiqlkhlristcyrlneIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRTNYSFGCGNAKDCTKLREAklrqgvellvl
Low Complexity Region (SEG)
MATCYVSICGLALDCSYMQLLSQSHHCRSPSTATVTSETQPILSQHKLLRLVITVLHSIFTVNYCIKSLSPATTAPHPYRWKANPPQSFAEMRKRPRNTPATREVKGEIVEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSNCISDPTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRTNYSFGCGNAKDCTKLREAKLRQGVELLVL
Disordered region (IsUnstruct)
**TCYVSICGLALDCSYMQLLSQSHHC*************PILSQHKLLRLVITVLHSIFTVNYCIKSLSPAT**********************************EIVEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSNCISDPTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRTNYSFGCGNAKDCTKLREAKLR********
Disordered Region (DISOPRED)
**TCYVSICGLALDCSYMQLLSQSHHCRSPSTAT********LSQHKLLRLVITVLHSIFTVN****************************************************LLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSNCISDPTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRTNYSFG****************QGVELLVL
Disordered Region (DISEMBL)
MATCYVSICGLALDCSYMQLLS********************LSQHKLLRLVITVLHSIFTVNYCIKSLSPATTAPHPYRWKANPPQSFAE***********REVKGEIVEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSNCISDPTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRTNYSFGCGNAKDCTKLREAKLRQGVELLVL
Disordered Region (DISPRO)
MATCYVSICGLALDCSYMQLLSQ*******STATVTSETQPILSQHKLLRLVITVLHSIFTVNYCIKS******************************************EDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSNCISDPTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRTNYSFGCGNAKDCTKLREAKLRQGVELLVL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATCYVSICGLALDCSYMQLLSQSHHCRSPSTATVTSETQPILSQHKLLRLVITVLHSIFTVNYCIKSLSPATTAPHPYRWKANPPQSFAEMRKRPRNTPATREVKGEIVEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSNCISDPTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRTNYSFGCGNAKDCTKLREAKLRQGVELLVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	509	2.2.26 [Sep-21-2011]
Q9SV82	409	FBD-associated F-box prot	yes	no	0.664	0.826	0.286	3e-20
Q9FFW2	410	FBD-associated F-box prot	no	no	0.691	0.858	0.282	1e-17
Q9FFW4	379	Putative FBD-associated F	no	no	0.650	0.873	0.268	2e-17
Q9FJT1	435	Putative FBD-associated F	no	no	0.699	0.818	0.281	3e-17
Q9FNJ4	443	Putative F-box/FBD/LRR-re	no	no	0.707	0.812	0.252	5e-16
Q9FJU2	398	Putative FBD-associated F	no	no	0.687	0.879	0.258	6e-16
Q9FGQ3	444	F-box/FBD/LRR-repeat prot	no	no	0.675	0.774	0.285	8e-15
Q9C8Y8	453	Putative F-box/FBD/LRR-re	no	no	0.695	0.781	0.244	9e-15
Q9LXR6	457	Putative F-box protein At	no	no	0.591	0.658	0.269	3e-14
Q9ZV94	452	Putative F-box/FBD/LRR-re	no	no	0.658	0.741	0.263	4e-14

>sp|Q9SV82|FBD40_ARATH FBD-associated F-box protein At4g10400 OS=Arabidopsis thaliana GN=At4g10400 PE=2 SV=2

 Score =  100 bits (249), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 116/405 (28%), Positives = 184/405 (45%), Gaps = 67/405 (16%)

Query: 112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSNCISDPTC 171
           D +S LPD++L+ I+S +P K A  TS+LS RW++LW + T L F     S +      C
Sbjct: 2   DRISGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSKRYSESEFKRLQC 61

Query: 172 -IDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWP-------- 222
            +D+ L LHR   I  FRL L        +I  WV  A+S+ ++  EL+++         
Sbjct: 62  FLDRNLPLHRAPVIESFRLVLSDSHFKPEDIRMWVVVAVSRYIR--ELKIYSSHYGEKQN 119

Query: 223 ---------------RLKNYTFLE----NCYNNLKS-ELSGVKYLRSLRLFSVNVTGEIL 262
                          +L     L+     C  +LK+ EL GV+Y +          G  L
Sbjct: 120 ILPSSLYTCKSLVILKLDGGVLLDVPRMVCLPSLKTLELKGVRYFKQ---------GS-L 169

Query: 263 EFILHNCPLLDQLSVVRS--ETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFK 320
           + +L NCP+L+ L V  S  + +  L V+  ++Q   L +ST     E  I TP+LLSF+
Sbjct: 170 QRLLCNCPVLEDLVVNLSHHDNMGKLTVIVPSLQ--RLSLSTPSS-REFVIDTPSLLSFQ 226

Query: 321 YFGPGQEL-KLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQ 379
                       IEN P+L + ++  V    +++++G ITS    +K L + S       
Sbjct: 227 LVDRNDNSHTFLIENMPKLRE-AYINVPFADIKSLIGSITS----VKRLAISS----EVG 277

Query: 380 FSEHELPNLTHLHLRVATL-NRESLLGLASIMKACPFLQTLIVQFDYNGYK------VGR 432
           + E  + N    HL   TL N+ S   L   +K  P L+ L++  + + ++        +
Sbjct: 278 YGEGFIFN----HLEELTLWNKYSSNLLVWFLKNSPNLRELMLVSETDDHENLGMLSWNQ 333

Query: 433 RRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVV 477
              VP      L+      +LGRP D ++A YIL+NA  L    +
Sbjct: 334 PSIVPECMLSSLQKFTWFKYLGRPQDRDIAVYILKNACRLRTATI 378

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFW2|FBD17_ARATH FBD-associated F-box protein At5g38590 OS=Arabidopsis thaliana GN=At5g38590 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 183/396 (46%), Gaps = 44/396 (11%)

Query: 112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDG-ITESSNCISDPT 170
           D ++ LPDD+L+ I+S +P   A  TS+LS RW++LW +   LD+          +    
Sbjct: 2   DKINGLPDDLLVKILSYVPTDIAVSTSILSKRWEFLWMWLPNLDYTSRWCRKPGDVGLRD 61

Query: 171 CIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFL 230
            I K L LHR   I   R    S D+   +I  W+  A+S+ V   +++ +   +N  FL
Sbjct: 62  FIHKNLPLHRAPVIESLRFHSNSPDIKPEDIRRWIEIAVSRHVHDLDIDHFSENEN-IFL 120

Query: 231 EN---CYNNLKSELSGVKY-----------LRSLRLFSVN-VTGEILEFILHNCPLLDQL 275
            +   C + +  +L  V             L++L L +V+ V G+ L+ +L  CP+L+ L
Sbjct: 121 SSFFACKSLVTLKLRSVTLRDIPSMVCLPSLKTLLLDNVSFVEGKSLQELLSICPVLEDL 180

Query: 276 SVV--RSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNL--LSFKYFGPGQELKLH 331
           SV     E    L +V  ++    L I   + L+   I TP+L  L  + +     L L 
Sbjct: 181 SVYCDDYENTKELTIVVPSLLSLSLYIPDEWLLDGYWIDTPSLEYLKLEDWNSCDHLSL- 239

Query: 332 IENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHL 391
           I+N P+L + ++        ++V+  ITS    +K L + S D     F  ++   L HL
Sbjct: 240 IKNMPKLRE-AYVDAKCFLPKSVIESITS----VKHLTICSKDGYGDGFVFNQ---LEHL 291

Query: 392 HLRVATLNRESLLGLASIMKACPFLQTL----------IVQFDYNGYKVGRRRKVPRHSH 441
            L V   +  SLLG   ++K  P L+ L           V    +G+   +   VP    
Sbjct: 292 TLCVCRGDSPSLLG--QLLKDSPNLRILEISVMEDHVDDVGISLDGW--NQPSSVPECLL 347

Query: 442 QHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVV 477
             L++ +   +LGRP D ++A YIL+NA  L+K  +
Sbjct: 348 SSLQIFKWPQYLGRPEDRDIAVYILKNARHLKKTTI 383

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFW4|FBD16_ARATH Putative FBD-associated F-box protein At5g38570 OS=Arabidopsis thaliana GN=At5g38570 PE=4 SV=2

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 163/369 (44%), Gaps = 38/369 (10%)

Query: 112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSNCISDPTC 171
           D ++ LPDD+L+ I+S +P   A  T VLS RW++LW +   L+F    +S   I D   
Sbjct: 2   DNINGLPDDLLVKILSFVPTYVAVSTCVLSKRWEFLWMWLPNLEFVSPWDSRPGIVD--F 59

Query: 172 IDKVLQLHRGSSINKFRLCLY---SKDLHESEITNWVYSALSKRVQIFELELWPRLKNYT 228
           I+K L +HR   I   RLC++   +  +    I  W+  A+S  V+  +++   + K   
Sbjct: 60  INKKLPIHRAPVIE--RLCIHINSNPHIKPEYIKRWIEIAVSHYVRELQIDYHSKTK--- 114

Query: 229 FLENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSV--VRSETLVSL 286
                   +  +L    Y          + G+ L+ ++  CP+L+ LS+    ++ L   
Sbjct: 115 --------ITLQLEAESYF---------IDGKYLQQLISGCPVLEDLSLRFCCNDNLREF 157

Query: 287 KVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGV 346
            V+  ++Q   L +     LN  KI TP+L   K             N P+L +      
Sbjct: 158 TVIIPSLQSLSLFLFGNSNLNRYKIDTPSLKYLKLEDWNDPEHYSWTNMPKLREAYVDVE 217

Query: 347 MLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGL 406
               ++ ++G ITS    +K L +  C E Y         +L HL L +   +  +LLG 
Sbjct: 218 SSNHLKTLIGSITS----VKHLTI-CCLEDYLYGDGFIFNHLEHLKLCMCPFDSSNLLG- 271

Query: 407 ASIMKACPFLQTL-IVQFDYNGYKVGRR-RKVPRHSHQHLKLVELHGFLGRPIDLELAFY 464
             ++K  P LQ L I +   N      +   V       LK++    + GRP D ++A Y
Sbjct: 272 -QLLKGSPNLQVLDIFEMKRNDIVCWNQPSSVLECLLSSLKILNWSAYFGRPQDRDIAVY 330

Query: 465 ILENAMTLE 473
           IL+NA  L+
Sbjct: 331 ILKNACHLK 339

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJT1|FBD29_ARATH Putative FBD-associated F-box protein At5g56820 OS=Arabidopsis thaliana GN=At5g56820 PE=4 SV=2

 Score = 90.5 bits (223), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 189/430 (43%), Gaps = 74/430 (17%)

Query: 112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSNCIS---- 167
           D +S LPDD+L+ I+S +   +A  TS+LS RWK++W     LD D   +S   I     
Sbjct: 15  DRISYLPDDLLLRILSFIHTSDAISTSLLSKRWKFVWKMMPTLDLDE--DSCRNIGTLRF 72

Query: 168 DPTCIDKVLQLHRGSSINKFRLCLYSKD-------------LHESEITNWVYSALS--KR 212
           D  C    L+ H    +    L L +               LHE  IT++ YS +   + 
Sbjct: 73  DEGCC-MFLKSHEAPVLTSLNLKLMTPSHDIDRLLSNIKPILHEITITSYRYSTIRFPRN 131

Query: 213 VQIFELELWPRLKNYTFLE----NCYNNLKS-ELSGVKYLRSLRLFSVNVTGEILEFILH 267
           + + +  +  +L++   ++     C+ +LKS  L+ VKY  S R        E    +L 
Sbjct: 132 LNVCQTLVVMKLQDKVLVDVSFPVCFRSLKSLHLTRVKY--SCR--------ESFTTLLS 181

Query: 268 NCPLLDQLSV----VRSETLVSLKVVGSAIQLKHLRISTC-----YRLNEIKISTPNLLS 318
            CP+L+ L +    V  + L S  +   ++Q    R+S C     +R    +IS P+L  
Sbjct: 182 ACPVLEDLDLFIGRVHYDCLNSFTIWVPSLQ----RLSICDESYRFRSTTFEISVPSLKY 237

Query: 319 FKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYA 378
            K        K  +E+ P LV+           +N++  +TS   +LK  + D  D ++ 
Sbjct: 238 LKIACQDSCFKF-VEDMPNLVEAHVEANQ-HETKNLLRFLTSV-ERLK--DPDLTDRIFH 292

Query: 379 QFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQ-------FDYNGYKVG 431
           Q    EL    HLH R   LN + +L   S++K  P LQTL +         D     V 
Sbjct: 293 QLLYLEL----HLHKR---LNGDRIL---SLLKHSPNLQTLKLNEKPLRSIKDQPNISVR 342

Query: 432 RRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNR--TNYSFGCGNA 489
           +   VP     HL+ +E  G+ GRP D E+A YIL NA+ L    ++R  ++  F     
Sbjct: 343 KPNSVPECLTFHLETLEWQGYAGRPEDKEIAVYILGNALRLNTATISRYFSSSRFRHHQK 402

Query: 490 KDCTKLREAK 499
           KD   + E K
Sbjct: 403 KDLKIVEELK 412

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNJ4|FDL32_ARATH Putative F-box/FBD/LRR-repeat protein At5g22670 OS=Arabidopsis thaliana GN=At5g22670 PE=4 SV=1

 Score = 86.3 bits (212), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 191/431 (44%), Gaps = 71/431 (16%)

Query: 106 KGEIVEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSNC 165
           +G   +D +SLLPDD+L  I+S LP K A +TSVLS RWK       +L+F+ ++E    
Sbjct: 5   RGVTSQDSISLLPDDLLCRILSNLPTKVAVRTSVLSKRWKRFSLSVPLLEFN-VSEFHGY 63

Query: 166 ISDPTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLK 225
                 +   L   R + I+K +L    K    S +T W+++A+ ++VQ  ++  W  L 
Sbjct: 64  YEFARVVHGFLDTSRETCIHKLKLAFEKKQHDRSYLTQWIHNAVKRKVQHLDIGRWSYLG 123

Query: 226 NYTFLENCYNNLKSELSGVKYLRSLRLFSVNV----------------------TGEILE 263
                 + Y          + L SLRL +V++                         +LE
Sbjct: 124 QELIPHSLYT--------CETLVSLRLHNVSLPDFDHVSLPRLKTMHLIDNIYPNDALLE 175

Query: 264 FILHNCPLLDQLSVVRS-ETLVSLKVVGSAIQLKHLRIS-TCYRLNEIK-------ISTP 314
            ++ +CP+L+ L+V R  E +V +  V S + LK L ++    R  +I+       I  P
Sbjct: 176 NLISSCPVLEDLNVSRDVENIVKVLRVRS-LSLKSLILALDGDRYGDIEDDSWEVVIDAP 234

Query: 315 NL--LSFKYFGPGQELKLHIENAPQLVDIS---------FRGVMLTR--VRNVVGPITSC 361
            L  LS +     +   L    +P  VDI           +  +LTR  VRN    ++S 
Sbjct: 235 RLSYLSLRD-DQSKSFVLSSVTSPAKVDIDVTFDVVRSVLKNFLLTRSVVRNFFTRLSS- 292

Query: 362 FPQLKTLELDSCD-ELYAQFSEHE-LPNLTHLHLRVATLNRESLLGLASIMKACPFLQTL 419
              ++ + +     ++ +++  HE LP   ++    A      L  L + +++CP L++L
Sbjct: 293 ---VRDMTMSGTTLKVLSRYMRHEPLPQFPNMIQFYAVFCNSDLEKLPNFLESCPNLKSL 349

Query: 420 IVQ---FDYNGYKVGRRRKVPRHSHQHLKLVELHGFL-GRPIDLELAFYILENAMTLEKM 475
           +++   F  N   +     +P+     L+ VE+H  + G   +++L  Y LEN+  L+K 
Sbjct: 350 VLELEVFKKNDLLI-LSSSIPKCLRSSLEHVEIHTPISGAEAEMKLVKYFLENSAVLKKF 408

Query: 476 VVNRTNYSFGC 486
            +       GC
Sbjct: 409 TLQ-----LGC 414

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJU2|FBD37_ARATH Putative FBD-associated F-box protein At5g56700 OS=Arabidopsis thaliana GN=At5g56700 PE=2 SV=2

 Score = 86.3 bits (212), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 172/391 (43%), Gaps = 41/391 (10%)

Query: 114 MSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDF---DGITESSNCISDPT 170
           +S L D++L+ I+S LP KEA  TS LS +W++LW + + L+F   DG    S C+ D  
Sbjct: 4   ISDLSDELLVKILSFLPTKEAVSTSCLSKQWEFLWMWLSKLEFYFSDG--SESACLRD-- 59

Query: 171 CIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTF- 229
            I K L LH+   I   R C +   L   ++ +WV  A+S+ V+   + L       +  
Sbjct: 60  FIAKNLPLHKAPIIESLRFCSFFGSLQPKDLKSWVRIAVSRCVRELSISLHDTTAAVSLP 119

Query: 230 --LENCYNNLKSELSGVKY------------LRSLRLFSVNVTGE-ILEFILHNCPLLDQ 274
             L  C + +  +L G K             L++L+L  +  + E  L  +L  CP+L+ 
Sbjct: 120 SSLYTCKSLVTLKLYGKKVLLDVPRTVFLPSLKTLQLERLRYSDEDSLRLLLSYCPVLED 179

Query: 275 LSVVRS--ETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPGQELKLHI 332
           LS+VR   + L +L V+  ++Q   L I      +   I TP+L  FK     + +   I
Sbjct: 180 LSIVREDYDNLRALVVIVPSLQRLSLEIPGNCSSDGYVIVTPSLKYFKVVDYRESMSYLI 239

Query: 333 ENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHL- 391
           E  P+L +     V+L     ++  +T      K L +      Y +    +      L 
Sbjct: 240 EQMPELEEADI--VVLQYPEKLLESVTF----FKRLSIRVIFNTYTETVYRDGIVFNRLE 293

Query: 392 HLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVG---------RRRKVPRHSHQ 442
           +L++   N +    L   +K  P L+ L +  D     +G          +  VP+   +
Sbjct: 294 NLKLCICNGDWSKLLIQFLKDSPNLRVLNLLVDDYPSSLGDYEPVRWKNNKSSVPKCLLE 353

Query: 443 HLKLVELHGFLGRPIDLELAFYILENAMTLE 473
            L+  E  G++G P + +   YI ++A  L+
Sbjct: 354 SLETFEFAGYIGTPEERDFLSYIFKHARCLK 384

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGQ3|FDL37_ARATH F-box/FBD/LRR-repeat protein At5g53840 OS=Arabidopsis thaliana GN=At5g53840 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 191/413 (46%), Gaps = 69/413 (16%)

Query: 111 EDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSNCISDPT 170
           E+ +S LPD ++  I+S L  K+A +TS+LS+RW+ LW    VLDFD   E  +     +
Sbjct: 17  EERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLDFDS-RELRSFSEFVS 75

Query: 171 CIDKVLQLHRGSSINKFRLCLYSKDLHES-EITNWVYSALSKRVQIFELELWP------- 222
                  LH+ S I K R+C+Y  DL  +  +T+W+      R+Q  ++ ++        
Sbjct: 76  FAGSFFYLHKDSYIQKLRVCIY--DLAGNYYLTSWIDLVTRHRIQHIDISVFTCSGFGVI 133

Query: 223 RLKNYTFLENCYNNLKSELSGVKY----------LRSLRLFSVNVTGE-ILEFILHNCPL 271
            L  YT    C   +  +LS V            L+ L L  VN T E  L+ I+   P+
Sbjct: 134 PLSLYT----CDTLVHLKLSRVTMVNVEFVSLPCLKILDLDFVNFTNETTLDKIISCSPV 189

Query: 272 LDQLSVVRSETLVSLKVVGSAIQ-LKHLRISTCY-RLNEIKISTP----------NLLSF 319
           L++L++V+S    ++K++    Q LK + I   + R N + I TP          ++ S 
Sbjct: 190 LEELTIVKSSE-DNVKIIQVRSQTLKRVEIHRRFDRHNGLVIDTPLLQFLSIKAHSIKSI 248

Query: 320 KYFGPGQELKLHIE-NAPQLVDISFRGV------MLTRVRNVV---GPITSCFPQLKTLE 369
           ++   G   K+ I+ N     D+S R +       ++RVR++V   G I   F  ++   
Sbjct: 249 EFINLGFTTKVDIDVNLLDPNDLSNRSMTRDFFTTISRVRSLVIRHGTIKDIFHYMEL-- 306

Query: 370 LDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTL---IVQFDYN 426
                E   QF       L+ L    +  N E LL L   +K+CP L++L   +V ++ N
Sbjct: 307 -----EPLQQFC-----YLSELSAVCSISNLEMLLNL---LKSCPKLESLSLKLVDYEKN 353

Query: 427 GYKVGRRRKVPRHSH-QHLKLVELHG-FLGRPIDLELAFYILENAMTLEKMVV 477
             +      VP       LK V+L    LG   +L++A Y LEN+  LEK+ +
Sbjct: 354 KKEEVMSSTVPPPCLVSSLKFVKLESQLLGCGTELKVARYFLENSTILEKLTL 406

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8Y8|FDL7_ARATH Putative F-box/FBD/LRR-repeat protein At1g66290 OS=Arabidopsis thaliana GN=At1g66290 PE=4 SV=1

 Score = 82.0 bits (201), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 192/441 (43%), Gaps = 87/441 (19%)

Query: 112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDG--ITESSNCISDP 169
           D +S LP+ +++ ++  LP K+  KTSVLS++W+ +W +   LD D    TE  +  S  
Sbjct: 29  DWISDLPEALIVLVLLNLPTKDVIKTSVLSTKWRNIWRYVPRLDLDNRHFTEFDSLAS-- 86

Query: 170 TCIDKVLQLHRGSSINKFRLCLYSKDLHESEIT----NWVYSALSKRVQIFELELWPRLK 225
             ID+ ++ +R   +NKF+L   S    + ++      W+Y A+ ++VQ  ++  WP ++
Sbjct: 87  -FIDRFMRSNR--KVNKFKLRCGSDLDGDVDLATCSWKWIYMAIKRKVQHIDVT-WPGVR 142

Query: 226 NYTFLENCYNNL----------KSELSGVKYLRSLRLFSVNVTGEI-LEFILHNCPLLDQ 274
            Y  + NC + +          K E   +  L+ L L  V    E   + ++  CP+L+ 
Sbjct: 143 IYPEIYNCESLVSLKLSEVTLTKPEFVSLPSLKVLVLDWVEFYNEFAFDMLMSGCPVLES 202

Query: 275 LSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPG--------- 325
            ++ R               L ++R+        +++ + +LLSF Y+G           
Sbjct: 203 FTLCRR-------------YLDNVRV--------LRVISQSLLSFNYYGSSSKSFRDDLV 241

Query: 326 --------QELKLH--------IENAPQLV----DISF---RGVMLTR----VRNVVGPI 358
                   ++LKL         IEN   LV    DI F   RG          R ++   
Sbjct: 242 VILDAPKLEKLKLSHQLTASFIIENLSSLVEADIDIEFNFCRGKKFDPDDLPKREMIRNF 301

Query: 359 TSCFPQLKTLELDSCD-ELYAQFSEHE-LPNLTHLHLRVATLNRESLLGLASIMKACPFL 416
                ++KT+ + +C  E+   +S  E LP   +L        ++    L    K+C  L
Sbjct: 302 LVGLSRVKTMTIAACTLEVIYDYSRCEPLPLFPNLSFFSVEFYQKRWEILPFFFKSCSNL 361

Query: 417 QTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMV 476
           ++L+++ DY   K       PR     L+ V++   L +   +EL  Y+LEN+  L+K+ 
Sbjct: 362 KSLVLESDYFPRKRTSIISEPRCLLSSLEYVKIEFALDKG-KMELVRYLLENSPILKKLT 420

Query: 477 VNRTNYSFGCGNAKDCTKLRE 497
           ++  + S      K C  LRE
Sbjct: 421 LSLDHSS----RKKSCVILRE 437

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR6|FB207_ARATH Putative F-box protein At3g58860 OS=Arabidopsis thaliana GN=At3g58860 PE=4 SV=1

 Score = 80.5 bits (197), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 151/342 (44%), Gaps = 41/342 (11%)

Query: 112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDF---------DGITES 162
           DL S LPD+++ +I+S LP KEAA TSVL+ +W+YL+ F   LDF         +G  E 
Sbjct: 7   DLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDFLHPQEGKREK 66

Query: 163 SNCI-SDPTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQ----IFE 217
              + S    +D+VL L   S I KF L + +  +    +  W+ + L + V       +
Sbjct: 67  DGILRSFMDFVDRVLALQGASPIKKFSLNVKTG-VDPDRVDRWICNVLQRGVSHLALFMD 125

Query: 218 LELWPRLKNYTFLENCYNNLKSELSGVKY----------LRSLRLFSVNVTGEILEFILH 267
            E    L     +      LK+      Y          L++L L SV       + +L 
Sbjct: 126 FEEEYSLPYEISVSKTLVELKTGYGVDLYLWDDDMFLPMLKTLVLESVEFGRGQFQTLLP 185

Query: 268 NCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRIST---CYRLNEIKISTPNLLSFKYFGP 324
            CP+L++L ++  E      V+ S+  LK+L+I++   C  L  +   TPNL+   Y+  
Sbjct: 186 ACPVLEELMLLNME-WKDRNVILSSSSLKNLKITSEDGC--LGTLSFDTPNLVFLDYYDY 242

Query: 325 GQELKLHIENAPQLVDISFRGVM----LTRVRNVVGPITSCFPQLKTLELDSCDELYAQF 380
             E    I N   LV++    V+    + R R+ V  +       +   +          
Sbjct: 243 VAE-DYPIVNLKNLVEVGINLVLTADRINRARDNVWNLIHGIQNAEIFHISPVTFEVLSL 301

Query: 381 SEHELP---NLTHLHLRVATLNRESLLGLASIMKACPFLQTL 419
           S   +P   NLT L++R  T+ ++    +  ++K CP L+TL
Sbjct: 302 SCEAMPVFKNLTTLNIR--TVMQQGWQAMPLLLKNCPNLETL 341

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV94|FDL11_ARATH Putative F-box/FBD/LRR-repeat protein At1g78760 OS=Arabidopsis thaliana GN=At1g78760 PE=4 SV=1

 Score = 80.1 bits (196), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 201/425 (47%), Gaps = 90/425 (21%)

Query: 111 EDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVL--DFDGITESSNCISD 168
           ED +S LP+ ++  I+  +P K+  K+SVLS RW+ LW +   L  +++   + +  +S 
Sbjct: 15  EDRLSNLPESLICQIMLNIPTKDVVKSSVLSKRWRNLWRYVPGLNVEYNQFLDYNAFVS- 73

Query: 169 PTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITN---WVYSALSKRVQIFELELWPRLK 225
              +D+ L L R S    FRL  Y  D  E  I+N   W+   + +++++ ++       
Sbjct: 74  --FVDRFLALDRESCFQSFRL-RYDCDEEERTISNVKRWINIVVDQKLKVLDV------- 123

Query: 226 NYTFLENCYNNLKSELSGVKY----LRSLRLFSVNVTGEILEFILHN-----CPLLD--Q 274
               L+  + N + ++    Y    L SL+L +V         IL N      PL+   +
Sbjct: 124 ----LDYTWGNEEVQIPPSVYTCESLVSLKLCNV---------ILPNPKVISLPLVKVIE 170

Query: 275 LSVVR-SETLVSLKVVGSAIQLKHLRI--STCYRLNEIKISTPNLLSFKYFG----PGQE 327
           L +V+ S  LV  K++ S   L+ L I  S+   +N +++S+ +LLSFK+ G       E
Sbjct: 171 LDIVKFSNALVLEKIISSCSALESLIISRSSVDDINVLRVSSRSLLSFKHIGNCSDGWDE 230

Query: 328 LKLHIENAPQL--VDISFRGVMLTRVRN----VVGPITSCF-----------PQLKTL-- 368
           L++ I+ AP+L  ++IS       +++N    V   I   F           P+ K +  
Sbjct: 231 LEVAID-APKLEYLNISDHSTAKFKMKNSGSLVEAKINIIFNMEELPHPNDRPKRKMIQD 289

Query: 369 ---ELDSCDELYAQFSEH----------ELP---NLTHLHLRVATLNRESLLGLASIMKA 412
              E+ S  +L+   S H          ELP   NL+ LH+        +L  L++ +++
Sbjct: 290 FLAEISSVKKLF--ISSHTLEVIHDLGCELPLFRNLSSLHI---DFEDHTLKMLSTFLQS 344

Query: 413 CPFLQTLIVQFDYNGYKVGRRR-KVPRHSHQHLKLVELH-GFLGRPIDLELAFYILENAM 470
           CP +++L+V+F  +  + G R   +PR     L+ V++     G    +++  YILEN+ 
Sbjct: 345 CPNVKSLVVEFKDSSKEDGDRVLSIPRCFFTTLEYVKIERPITGEARGMKVVSYILENSP 404

Query: 471 TLEKM 475
            L+K+
Sbjct: 405 ILKKL 409

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	509
449440973	475	PREDICTED: putative FBD-associated F-box	0.793	0.850	0.320	5e-48
255544812	464	ubiquitin-protein ligase, putative [Rici	0.722	0.793	0.351	2e-45
302142991	402	unnamed protein product [Vitis vinifera]	0.622	0.788	0.359	3e-45
255540581	457	ubiquitin-protein ligase, putative [Rici	0.717	0.798	0.332	2e-39
357477131	447	F-box family-6 [Medicago truncatula] gi|	0.681	0.776	0.317	1e-37
356544606	444	PREDICTED: putative F-box protein At3g58	0.695	0.797	0.320	4e-37
357155585	449	PREDICTED: LOW QUALITY PROTEIN: putative	0.715	0.810	0.284	5e-29
116311968	790	OSIGBa0113E10.10 [Oryza sativa Indica Gr	0.671	0.432	0.316	2e-28
357162424	482	PREDICTED: putative FBD-associated F-box	0.750	0.792	0.277	2e-26
23617087	515	hypothetical protein [Oryza sativa Japon	0.701	0.693	0.276	3e-26

>gi|449440973|ref|XP_004138258.1| PREDICTED: putative FBD-associated F-box protein At5g56700-like [Cucumis sativus] gi|449501454|ref|XP_004161371.1| PREDICTED: putative FBD-associated F-box protein At5g56700-like [Cucumis sativus]

 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 146/455 (32%), Positives = 233/455 (51%), Gaps = 51/455 (11%)

Query: 94  KRPRNTPATREVKGEIVEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTV 153
           + P N    R V      D +S LP DIL+ I+S LPLKEAA+TS LS +W+ LW+F   
Sbjct: 33  EEPENERCDRSV------DSISHLPQDILVFILSLLPLKEAARTSTLSHKWRCLWSFIPC 86

Query: 154 LDFDGITE-------SSNCISDP----TCIDKVLQLHRGSSINKFRLCLYSKDLHESEIT 202
           L+FD   +         N  S+       +++V+  ++GS++   R+        + ++ 
Sbjct: 87  LNFDAHKKLLDLQFTDENLKSERRQFVKWVNRVIDSYKGSNLETLRIRFNLDSSFQCDVD 146

Query: 203 NWVYSALSKRVQIFELELWPRLKNYTFLENCYNNLKSE---------LSGVKYLRSLRLF 253
            WV  A+  ++++FEL L     +  +    +  L             S    L++L+L 
Sbjct: 147 RWVQFAMQWKLKMFELNLSDSYDSGIYSPCSFPQLSDGPKENFPRFMFSNSSSLKTLKLI 206

Query: 254 SVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKIST 313
           +VNV GE LE  L N PLL+ L V  S  L+SL+VVG++++L+ L +  C  L  +++S 
Sbjct: 207 AVNVGGEALECFLTNSPLLEILVVEYSHCLLSLRVVGASLKLRQLEVCMCNYLESLEVSA 266

Query: 314 PNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSC 373
           PNL SFKY GP   L + ++N P+L++  F       + +    ++S   QL+ L LD  
Sbjct: 267 PNLESFKYVGPW--LSMPLKNTPKLLETYFGSEFGVEIIDHFFLLSSYSSQLQKLILD-- 322

Query: 374 DELYAQFSEHE-------LPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDY- 425
             L   F E++       L NL  L L V      SL+G  S++KA P L    ++ DY 
Sbjct: 323 --LEVDFMENQGFRKWPILANLKELKLIVIAEGHSSLIGFTSLIKASPSLLKFTLKLDYL 380

Query: 426 NGYKVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVN-RTNYSF 484
           + ++    RKV +  HQ++K+VEL GF+G+PIDLEL  Y  +NA+ LE+++ + R     
Sbjct: 381 DMFEQRPLRKVKKFPHQYIKVVELAGFVGKPIDLELVQYFHKNAVALEEIIFDTRKPKDM 440

Query: 485 GC-----GNA-----KDCTKLREAKLRQGVELLVL 509
           G       NA     ++C     +KL  GV++ ++
Sbjct: 441 GTIFEKKQNAETIAGRECANGLRSKLFSGVKVTII 475

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544812|ref|XP_002513467.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223547375|gb|EEF48870.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 142/404 (35%), Positives = 218/404 (53%), Gaps = 36/404 (8%)

Query: 103 REVKGEIVEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTF-TTVLDFD---- 157
           R   G I E + S LP+D+L+NI+SRL +KEAA+TS+LS+RW++LWT+ T ++DFD    
Sbjct: 25  RARNGNISEHI-SQLPEDVLLNILSRLTMKEAARTSILSTRWRHLWTYYTGIMDFDASLT 83

Query: 158 ------GITESSNCI---SDPTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSA 208
                 G+   S  +   S  + +++VL+ H G ++   R+C         EI +W+  A
Sbjct: 84  MWYLQLGLGSKSLDMERHSFVSWVNQVLRSHEGPTMEGLRICFDLDSDFMYEIDSWITIA 143

Query: 209 LSKRVQIFELELW---PRLK---NYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTGEIL 262
           + KRV+  E++L    P +K   +Y F     N+     S    L++L+L  V+VTGE L
Sbjct: 144 MQKRVKRLEIDLTNIEPSIKTTGSYAFPSGLLND-----SSFSSLKTLQLNMVDVTGEAL 198

Query: 263 E-FILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKY 321
           +  +L  CPLL+ LS+V S +LVSLKV GS+++LK+L +  C  L  ++I+  +L+SFKY
Sbjct: 199 QHLLLSWCPLLEVLSIVNSTSLVSLKVSGSSLKLKYLEMVCCNNLKYLEITAASLVSFKY 258

Query: 322 FGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS 381
           +GP   + L  ++ P LVD SF G         +   +    QL+TL  D       +  
Sbjct: 259 YGP--LIGLPFKSVPNLVDASFGGPFCQLTIENLYQFSLYILQLETLRFDVGSAYLMREF 316

Query: 382 EHELPNLTHL-HLRVATLNR---ESLLGLASIMKACPFLQ--TLIVQFDYNGYKVGRRRK 435
               P L+++ HL V T        L    S++K CP L   TL V    +       +K
Sbjct: 317 PTNFPILSNVKHLEVTTAVSAVAHCLFPCLSLLKGCPLLHRFTLKVISCESTLVCRASQK 376

Query: 436 VPR-HSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVN 478
           VP  HSH  LK+VE+ GF G   ++EL  Y L NA  L+ ++++
Sbjct: 377 VPEDHSHPCLKVVEVLGFQGNAAEVELVLYFLRNAAVLKNLIIS 420

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142991|emb|CBI20286.3| unnamed protein product [Vitis vinifera]

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 198/367 (53%), Gaps = 50/367 (13%)

Query: 107 GEIVEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDG----ITES 162
           G+  EDL+S LPD+ILI+I+SRL L+EAA TSVLS RW+YLWT+T+ L+FD     I   
Sbjct: 17  GDFGEDLLSELPDEILISILSRLTLREAAATSVLSQRWRYLWTYTSRLNFDSVVNKIVRR 76

Query: 163 SNCISDPTC-------------IDKVLQLHRGS-SINKFRLCLYSKDLHESEITNWVYSA 208
           S+  +  T              + KVL  +RG  ++++FR+C        S+I  W   A
Sbjct: 77  SHSFALSTAAGRRRRRRKYIKWVHKVLAKYRGGRNLDEFRVCFDLSKRSRSDIDKWFEFA 136

Query: 209 LSKRVQIFELELW----------PRLKNYTFLENCYN------------NLKSELSGVKY 246
           +SK V+  E +            P     ++ +N Y             +      G K 
Sbjct: 137 MSKNVKNLEFDFLRCSSQNQDRDPWFVMLSYFQNFYKFPHRILGVREARDPNGMFVGFKS 196

Query: 247 LRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRL 306
           L++L L S+NV+ E +E+ L NCPLL++LSV  SE+LV+L+V G +I L+HL I  C  +
Sbjct: 197 LKTLSLKSINVSSEAVEYFLSNCPLLERLSVHGSESLVNLRVAGPSIMLRHLEIVKCSSI 256

Query: 307 NEIKISTPNLLSFKYFG--PGQEL--KLHIENAPQLVDISFRGVMLTRVRNVVGPITSCF 362
             I+I   NL+SF Y G   G  L   +HIEN+P LV++      L   +N++  ++SC 
Sbjct: 257 QTIEICDTNLVSFTYRGERKGDLLPNNMHIENSPLLVEVLAGVGRLGFAKNMLLKLSSCV 316

Query: 363 PQLKTLELDSCDELYAQFSEH----ELPNLTHLHLRVATLNRES-LLGLASIMKACPFLQ 417
            QL+ L+L + D  + + S      +L NL  L L V     E+ LLG  +++K CP L+
Sbjct: 317 HQLQILQL-TVDHFFPERSRAYLLPKLRNLKQLKLTVFVGCPENCLLGFVAMLKKCPHLE 375

Query: 418 TLIVQFD 424
           +L++Q D
Sbjct: 376 SLVLQVD 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540581|ref|XP_002511355.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223550470|gb|EEF51957.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 136/409 (33%), Positives = 224/409 (54%), Gaps = 44/409 (10%)

Query: 108 EIVEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFD--------GI 159
           E  ED +S LP++IL +I+S L  +EA++TSVLS RW+ LWT T+ L+FD         +
Sbjct: 15  EAKEDRISHLPEEILTSILSFLTTEEASRTSVLSRRWRILWTLTSSLNFDCTKIALGKKL 74

Query: 160 TESSNCISDPT----CIDKVLQLHRGSSINKFRLCLYSKDL---HESEITNWVYSALSKR 212
            +     S+ T     + +VL++++ S++++F   + S DL       +  W+  A+SK 
Sbjct: 75  DDRFALRSERTRFAMWVKRVLEVYKDSNLDEF---IVSFDLTCNSRRSLDKWMNFAMSKT 131

Query: 213 VQIFELELWP------RLKN--YTFLENCYNNLKSE--LSGVKYLRSLRLFSVNVTGEIL 262
           ++  E+ L P      R  +  Y+F  +CY+ ++    LS +  LRSL L  VN+TGE++
Sbjct: 132 LKRLEISLAPFSSRKFRFHDECYSFPVDCYSFIRGPEGLSNISSLRSLCLRYVNMTGEVV 191

Query: 263 EFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYF 322
           E  L NCPLL+QL+V  +  L SLKV  S+++LK+L I  CY L   +I  PNL++  Y 
Sbjct: 192 EHFLLNCPLLEQLTVAVAYRLESLKVPASSLRLKYLEIFDCYHLKNFEICAPNLVTILYN 251

Query: 323 GP----GQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLE-------LD 371
                 G+ +KL   + P L+D+   G  L+   +  G  +S F QL TL+       + 
Sbjct: 252 QGGRYNGRRMKLQAVHLPHLLDLHLGGPELSITEDFFGACSSSFSQLMTLKIVVTEVRMQ 311

Query: 372 SCDELYAQFSEH-ELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF-DYNGYK 429
            C ++  +F +  EL NL HL  +    +  S+L +  ++K+ P L    ++  D +  +
Sbjct: 312 EC-QVRLKFPKFPELTNLRHLGFKTE-YDICSILAVRLLIKSSPLLNKFTLELADGSRCQ 369

Query: 430 VGRR-RKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVV 477
           + RR R      HQ+LK+VE+ GF+G  ++ E   + L+NA  LEK+++
Sbjct: 370 IKRRVRTGINCPHQNLKVVEIVGFIGGAVEYEFIMFFLDNASALEKIIL 418

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477131|ref|XP_003608851.1| F-box family-6 [Medicago truncatula] gi|355509906|gb|AES91048.1| F-box family-6 [Medicago truncatula]

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 127/400 (31%), Positives = 202/400 (50%), Gaps = 53/400 (13%)

Query: 111 EDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWT-FTTVLDFDGITESSNCISD- 168
           ED+++ LPD I INI++ LP+KEAA+TS+LS +WK LWT F+  L+F+G     + I D 
Sbjct: 24  EDIINQLPDGIPINILANLPIKEAARTSILSRKWKNLWTYFSGTLEFEGSPIMKDMIKDL 83

Query: 169 -----------------------PTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWV 205
                                   + I+++L   + S++   +     K++  S+I NW+
Sbjct: 84  KKVTGGRLQMAMEIMYDAERQTYTSWINELLSSLQCSTLQGLKFWFPMKNV--SDIDNWI 141

Query: 206 YSALSKRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSL---RLFSVNVTGEIL 262
           + A+ K+VQ  EL          F       L   +  V+   SL   R+ S+ VT E+L
Sbjct: 142 HFAVQKKVQKLEL---------YFGHTIVYVLPLHIFKVERFNSLCVLRMKSITVTDEML 192

Query: 263 EFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYF 322
           E+++ NC LL+ LS+V S    ++KV GS+++LK L +  C+ L +I+I    L+SFKY+
Sbjct: 193 EYLMCNCQLLETLSLVDSRVPKTMKVSGSSLKLKCLELVRCWELTKIEIFAEKLVSFKYY 252

Query: 323 GPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELD---SCDELYAQ 379
             G  L+   ++ P L + SF G  +  VR       S  PQ+K L+LD   +  E+   
Sbjct: 253 --GSHLETEFKSVPCLEEASFGGSFVEFVRE------SFLPQIKVLKLDITQNSPEVIYW 304

Query: 380 FSEHELPNLTHL-HLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR 438
            S  +LP L +L HL +     + +     ++KA P L  L ++            K   
Sbjct: 305 LS--QLPKLKNLKHLELVACADDGISACVMLLKASPSLWRLKIKMLNTKPTYITEHKFTM 362

Query: 439 HSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVN 478
             H +LK +EL GF G   ++EL  YILEN   L+K+ ++
Sbjct: 363 ECHYNLKELELVGFCGAACEVELVMYILENTDELQKITID 402

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544606|ref|XP_003540740.1| PREDICTED: putative F-box protein At3g58860-like [Glycine max]

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 129/402 (32%), Positives = 209/402 (51%), Gaps = 48/402 (11%)

Query: 112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTF-TTVLDFD------------- 157
           D++S +PDDIL +I+SRL LKEAA+TSVL+++W+Y WTF + +LDFD             
Sbjct: 11  DIISTMPDDILGDILSRLTLKEAARTSVLATKWRYHWTFFSGLLDFDHSLRNFHLRREHV 70

Query: 158 GITESSNCISDP-----TCIDKVLQLHRGSSINKFRLCLYSKDLHES-EITNWVYSALSK 211
           GI    N          T +  V++  + SS+   R+C+   DL +   +  WV  A  K
Sbjct: 71  GILTKCNVFVYEWERFMTRMANVMKSLKSSSLQGLRICM---DLGDPWRVAEWVKYAAEK 127

Query: 212 RVQIFELELWPRLKNYTF--------LENCYNNLKSELSGVKYLRSLRLFSVNVTGEILE 263
            VQ  +L+      +Y F        L   +N   S    +K L +LRL SV+V+GE++E
Sbjct: 128 HVQTLDLDF-----SYHFSVPFYEISLTIVHNVFPSRGYEMKSLCNLRLSSVDVSGEVIE 182

Query: 264 FILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFG 323
            +L +CPLL+ + V+ S+ LV LKV G A++LKHL +  C R+ ++ I   NL++F+Y  
Sbjct: 183 GLLASCPLLESICVIESKRLVRLKVRGEALRLKHLELVEC-RIMDLDIYAVNLVTFRY-- 239

Query: 324 PGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPIT--SCFPQLKTLELDSCDELYAQFS 381
            G+  K   +N P LV+ SF G+  + + + +  +       Q+  L+L+   + Y  F 
Sbjct: 240 QGKYGKFKFQNVPSLVEASFGGIFCSYLESDMDRVDFYGVLLQINVLKLE-LSKPYPGFL 298

Query: 382 EHELP---NLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRR--RKV 436
           E  LP   N+  L +R+   +  +L    S++ + P ++ L ++F  N   V     +  
Sbjct: 299 EG-LPVFDNVGQLEIRIPHRSGAALDHHVSLLSSFPSVRVLKIKFQRNDLSVVEENWKAN 357

Query: 437 PRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVN 478
             H + +L+ +E+ GF   P  +EL   I E A  L  +VV+
Sbjct: 358 LEHEYPNLRELEVSGFRRDPSQMELLISIFEKAPNLNSVVVD 399

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357155585|ref|XP_003577168.1| PREDICTED: LOW QUALITY PROTEIN: putative F-box/LRR-repeat protein At5g54820-like [Brachypodium distachyon]

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 121/426 (28%), Positives = 196/426 (46%), Gaps = 62/426 (14%)

Query: 117 LPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFD-----GITESSNCISD--- 168
           LP+DIL  I+SRL LK+A +TSV+SS W+++W +  +L F      G        SD   
Sbjct: 13  LPEDILSIIVSRLTLKDAVRTSVVSSDWRHIWKYHPILRFVISSVLGSKAKRKRSSDQHK 72

Query: 169 ----PTCIDKV---LQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELW 221
                  ID+V   L    G +++K  +    ++ H   I  WVY A++   +I  L   
Sbjct: 73  RRLRKRFIDRVSYILSKXSGLAVSKLAVKFDLREEHADHIDGWVYFAIASMAKILTLNFS 132

Query: 222 PRL---KNYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTGEI----------------- 261
           P L    +YTF  + +N+         YL++LRL SVN+   I                 
Sbjct: 133 PYLGYENHYTFPCHLFNS-----KNASYLQALRLDSVNLVPSIDFCGFANLKMLALDHVL 187

Query: 262 ----LEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLL 317
               L++ L  CP L+ LS+ R     +        +LK+L +  C  ++ I+ + PNL 
Sbjct: 188 VMQDLQYFLSKCPALEWLSIQRCYLKCNCHASAPLGRLKYLCVKNC-EVDRIEFAAPNLN 246

Query: 318 SFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDEL- 376
           +F+Y G    +K H  +  ++  I   G   + +  V   + +  P ++TL +++  ++ 
Sbjct: 247 TFEYRGYQILIKFHECSKLKMAIIHIIG--HSTLEYVFTGLPNAVPHVETLHVETFVDIP 304

Query: 377 ---YAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF------DYNG 427
                +++     +L HL LRV    + + L LA +++A PFL+ L +        DY G
Sbjct: 305 KIPEFRYAPLVFSHLKHLALRVRLFGKTTALQLACLLEAAPFLEDLHLDMYCFEGVDYIG 364

Query: 428 YKVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRTNYSFG-- 485
             +      P   H HLK   + GF G    +ELA YI+ NA+ LE+M ++  N  FG  
Sbjct: 365 SALDMIVDSP---HYHLKTACMTGFRGNRGQIELAKYIMRNAVELERMTIDPRNIMFGRS 421

Query: 486 CGNAKD 491
            GN  D
Sbjct: 422 IGNEFD 427

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116311968|emb|CAJ86327.1| OSIGBa0113E10.10 [Oryza sativa Indica Group]

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 126/398 (31%), Positives = 183/398 (45%), Gaps = 56/398 (14%)

Query: 117 LPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSN-----CISDP-- 169
           LP D+L +I S+LPLKEA +TSVLSS WK +WT    L+    T  S+     C S    
Sbjct: 365 LPKDVLCSITSKLPLKEAVRTSVLSSHWKRIWTCRANLELSTRTVYSDYDWERCSSHRGF 424

Query: 170 --------TCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELW 221
                     +D VLQ H G+   +FR+     + +   I  WV +A + + +   LEL+
Sbjct: 425 NLNKRNFIKIVDSVLQQHEGAGTEQFRIRFALDNKNSYHINRWVKNATALKTKGLVLELY 484

Query: 222 -----PRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLS 276
                PR+            + ++  G   L  L L  V++T E L   L  C  L ++ 
Sbjct: 485 SLLFGPRI------------VPADSRGSLNLTKLSLREVDITDEDLHQFLSECNHLREVD 532

Query: 277 VVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPGQELKLHIENAP 336
           +     L +L+V G   QLK L ++ C  L EIK+S   L +  Y GP   L+L I +  
Sbjct: 533 ITDCRMLTNLRVPGHLNQLKSLLVAICPLLREIKLSC-GLTALDYRGPFIPLQLAIPSQT 591

Query: 337 QLVDISFRGVMLTRVRNVVGPITSCFPQ---------LKTLELDSCDELYAQFSEHELPN 387
             V IS     L    + +G I S  P          LK+ +++  D L        L +
Sbjct: 592 TNVSIS-----LLTFHSALGYIFSDLPSTLTNLETLTLKSKQVERIDMLSRLPRLISLRH 646

Query: 388 LTHLHLRVATLNRE--SLLGLASIMKACPFLQTLIVQFD----YNGY--KVGRRRKVPRH 439
           LT L L ++ L +    LL  AS++KA PF++ L +       +  Y    G  R +PR 
Sbjct: 647 LT-LGLTISDLPQRKIDLLDFASLLKAAPFMEKLELHMKMVCVHQRYCQDDGELRSLPRC 705

Query: 440 SHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVV 477
            H HL  V++ GF G    LELA +IL NA  L+ MV+
Sbjct: 706 PHSHLSWVQITGFFGEKDQLELALHILRNATFLKAMVI 743

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357162424|ref|XP_003579406.1| PREDICTED: putative FBD-associated F-box protein At1g61330-like [Brachypodium distachyon]

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 123/444 (27%), Positives = 204/444 (45%), Gaps = 62/444 (13%)

Query: 82  KANPPQSFAEMRKRPRNTPATREVKGEIVEDLMSLLPDDILINIISRLPLKEAAKTSVLS 141
           K +P Q      KR R     +  K +++      LP DIL +++S+LPLKEA +TSVLS
Sbjct: 7   KTSPGQQHEAAAKRKR----IKRSKLQLIS-----LPTDILFSVLSKLPLKEALRTSVLS 57

Query: 142 SRWKYLWTFT-TVLDF---------DGITESSNCISDP-----TCIDKVLQLHRGSSINK 186
           ++WK++W    T LDF         +  T +S    D        ++ +++ H G  I +
Sbjct: 58  TQWKHVWRGGCTKLDFTRKTILTKNERTTFTSRSRDDNRKMFIKRVNSIIRQHSGIGIEQ 117

Query: 187 FRLCLYSKDLHESEITNWVYSALSKRVQIFELEL-W----PRLKNYTFLENCYNN----- 236
           FR+     + H   +  WV  A+  + +   L++ W    P +  Y F  +  N      
Sbjct: 118 FRVIQPLHNEHADYVDTWVNYAIESKAKELVLDMDWEAHGPEIVPYDFFSHSTNTNSYMH 177

Query: 237 ------------LKSELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLV 284
                       L ++ +G   L  L L SVN+T E  E +L  C LL  L +   + L 
Sbjct: 178 LNSLELNFVSLRLPADFTGFPNLTKLNLESVNITNEDTEHLLFICTLLVSLRIAHCKMLT 237

Query: 285 SLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFR 344
           SL+      +LKHL + TC  L EI+++   +    Y GP   + L +  + +L +I  +
Sbjct: 238 SLR-TRHLNKLKHLVVLTCPLLQEIELNC-GITQLDYRGPI--IPLALARSLRLTNICIK 293

Query: 345 -GVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHL-HLRVATL---N 399
                + +  +   I +    L+ L L  C  +        +     L HLR+ T+    
Sbjct: 294 LSTKHSAIDFIFSEIPNTLHDLEVLTL-RCTHIQRAVVPTRIFKFDSLRHLRLETIICRK 352

Query: 400 RESLLGLASIMKACPFLQT----LIVQFDYNGY--KVGRRRKVPRHSHQHLKLVELHGFL 453
           +  +L LA +++A PFL+     +++  D+  Y  + G  R++P + H HL +V + GF 
Sbjct: 353 KLDVLDLACLLEAAPFLEKFELHMVMNRDHRRYCLEDGELRRLPSYPHCHLNMVHITGFY 412

Query: 454 GRPIDLELAFYILENAMTLEKMVV 477
           G+   LELA Y+L NA  L++M V
Sbjct: 413 GQKDQLELALYVLNNATMLKEMKV 436

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23617087|dbj|BAC20770.1| hypothetical protein [Oryza sativa Japonica Group] gi|125599211|gb|EAZ38787.1| hypothetical protein OsJ_23190 [Oryza sativa Japonica Group]

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 194/420 (46%), Gaps = 63/420 (15%)

Query: 114 MSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDF-------------DGIT 160
           +S LP+DIL  I+S+LPL+EAA+TS+LSS+W   W   T L+              D   
Sbjct: 27  LSNLPEDILCTIVSKLPLREAARTSILSSQWNRTWCSHTNLNLSYRSIMSRRYIERDIRP 86

Query: 161 ESSNCISDPTC--IDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFEL 218
           E     ++     +D +LQ H G  + K  +    ++ +   I  WV  A+  + +   L
Sbjct: 87  EGRKLNAEEFIRRVDAILQQHNGGGVEKIEVIGLLENENAYHINGWVNFAIKSKTKQLVL 146

Query: 219 EL----WPRLKNYTFLENCYN-----NLKS------------ELSGVKYLRSLRLFSVNV 257
           +     WP  + Y F    ++     NL+S            +  G + L+ L+L  V +
Sbjct: 147 DFRSFHWPIDEPYNFAFQIFDAANMENLQSLKLGSISLKPPADFKGFQNLKRLKLLDVGI 206

Query: 258 TGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLL 317
           T E L+ +L NC  L+ L +   + + SL+    + QLKHL +  C  L EI++++  L 
Sbjct: 207 TDEDLQLLLSNCNCLEFLGIYCCKLITSLRTTHLSTQLKHLYVYECPCLKEIELNS-GLT 265

Query: 318 SFKYFGPGQELKLHIENAPQLVDISFRGVMLT-RVRNVVGPITSCFPQLKTLELDSCDEL 376
           + +Y GP   + L       L ++  + + ++  ++ +   + S  P+L+ L L  C EL
Sbjct: 266 TLEYIGP--LIPLAPPGIYVLTNLRIKSLDISDSLQYIFTELPSTLPRLEMLTL-QCREL 322

Query: 377 YAQFSEHELPN-------LTHLHLRVATLN----RESLLGLASIMKACPFLQTLIVQF-- 423
                   LP+       L HL L +A          +L  A I++A P ++ L      
Sbjct: 323 ----ERITLPDKPIKFIYLKHLRLELAFSGPRKWDADILDFACILEAAPLMEKLEFHMWM 378

Query: 424 ---DYNGYKV--GRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVN 478
              D+  Y+   G+ R +P   H HLK V + GF G+   LELA +IL N++ L+ M ++
Sbjct: 379 NCRDHLRYRKAHGKLRTLPPCPHYHLKEVNIAGFYGQKDQLELAHHILRNSVVLQAMNID 438

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	509
TAIR|locus:2159803	410	AT5G38590 "AT5G38590" [Arabido	0.695	0.863	0.284	9.7e-20
TAIR|locus:2162499	443	AT5G22670 "AT5G22670" [Arabido	0.375	0.431	0.293	2.8e-19
TAIR|locus:2165086	435	AT5G56820 "AT5G56820" [Arabido	0.707	0.827	0.276	7.4e-18
TAIR|locus:2162489	450	AT5G22660 "AT5G22660" [Arabido	0.430	0.486	0.288	9.6e-18
TAIR|locus:2201512	453	AT1G66290 "AT1G66290" [Arabido	0.379	0.426	0.278	1.4e-16
TAIR|locus:2039488	405	AT2G26860 "AT2G26860" [Arabido	0.198	0.249	0.375	1.9e-15
TAIR|locus:2099019	457	AT3G58860 "AT3G58860" [Arabido	0.198	0.221	0.357	5.5e-15
TAIR|locus:2122754	409	AT4G10400 "AT4G10400" [Arabido	0.673	0.838	0.275	1.6e-14
TAIR|locus:2126911	453	AT4G00160 "AT4G00160" [Arabido	0.477	0.536	0.281	1.7e-14
TAIR|locus:2201537	457	AT1G66320 "AT1G66320" [Arabido	0.400	0.446	0.279	2.2e-14

TAIR|locus:2159803 AT5G38590 "AT5G38590" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 9.7e-20, P = 9.7e-20
 Identities = 112/394 (28%), Positives = 184/394 (46%)

Query:   112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGI-TESSNCISDPT 170
             D ++ LPDD+L+ I+S +P   A  TS+LS RW++LW +   LD+          +    
Sbjct:     2 DKINGLPDDLLVKILSYVPTDIAVSTSILSKRWEFLWMWLPNLDYTSRWCRKPGDVGLRD 61

Query:   171 CIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFL 230
              I K L LHR   I   R    S D+   +I  W+  A+S+ V   +++ +   +N  FL
Sbjct:    62 FIHKNLPLHRAPVIESLRFHSNSPDIKPEDIRRWIEIAVSRHVHDLDIDHFSENENI-FL 120

Query:   231 EN---CYNNLKSELSGVKY-----------LRSLRLFSVN-VTGEILEFILHNCPLLDQL 275
              +   C + +  +L  V             L++L L +V+ V G+ L+ +L  CP+L+ L
Sbjct:   121 SSFFACKSLVTLKLRSVTLRDIPSMVCLPSLKTLLLDNVSFVEGKSLQELLSICPVLEDL 180

Query:   276 SVVRS--ETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNL--LSFKYFGPGQELKLH 331
             SV     E    L +V  ++    L I   + L+   I TP+L  L  + +     L L 
Sbjct:   181 SVYCDDYENTKELTIVVPSLLSLSLYIPDEWLLDGYWIDTPSLEYLKLEDWNSCDHLSL- 239

Query:   332 IENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHL 391
             I+N P+L + ++        ++V+  ITS    +K L + S D     F  ++L +LT  
Sbjct:   240 IKNMPKLRE-AYVDAKCFLPKSVIESITS----VKHLTICSKDGYGDGFVFNQLEHLT-- 292

Query:   392 HLRVATLNRESLLGLASIMKACPFLQTLIVQF-----DYNGYKV---GRRRKVPRHSHQH 443
              L V   +  SLLG   ++K  P L+ L +       D  G  +    +   VP      
Sbjct:   293 -LCVCRGDSPSLLG--QLLKDSPNLRILEISVMEDHVDDVGISLDGWNQPSSVPECLLSS 349

Query:   444 LKLVELHGFLGRPIDLELAFYILENAMTLEKMVV 477
             L++ +   +LGRP D ++A YIL+NA  L+K  +
Sbjct:   350 LQIFKWPQYLGRPEDRDIAVYILKNARHLKKTTI 383

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162499 AT5G22670 "AT5G22670" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
 Identities = 61/208 (29%), Positives = 101/208 (48%)

Query:   106 KGEIVEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSNC 165
             +G   +D +SLLPDD+L  I+S LP K A +TSVLS RWK       +L+F+ ++E    
Sbjct:     5 RGVTSQDSISLLPDDLLCRILSNLPTKVAVRTSVLSKRWKRFSLSVPLLEFN-VSEFHGY 63

Query:   166 ISDPTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLK 225
                   +   L   R + I+K +L    K    S +T W+++A+ ++VQ  ++  W  L 
Sbjct:    64 YEFARVVHGFLDTSRETCIHKLKLAFEKKQHDRSYLTQWIHNAVKRKVQHLDIGRWSYLG 123

Query:   226 NYTF---LENCYNNLKSELSGVKY----------LRSLRLF-SVNVTGEILEFILHNCPL 271
                    L  C   +   L  V            L+++ L  ++     +LE ++ +CP+
Sbjct:   124 QELIPHSLYTCETLVSLRLHNVSLPDFDHVSLPRLKTMHLIDNIYPNDALLENLISSCPV 183

Query:   272 LDQLSVVRS-ETLVSLKVVGSAIQLKHL 298
             L+ L+V R  E +V +  V S + LK L
Sbjct:   184 LEDLNVSRDVENIVKVLRVRS-LSLKSL 210

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165086 AT5G56820 "AT5G56820" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 7.4e-18, P = 7.4e-18
 Identities = 118/426 (27%), Positives = 186/426 (43%)

Query:   112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSNCIS---- 167
             D +S LPDD+L+ I+S +   +A  TS+LS RWK++W     LD D   +S   I     
Sbjct:    15 DRISYLPDDLLLRILSFIHTSDAISTSLLSKRWKFVWKMMPTLDLD--EDSCRNIGTLRF 72

Query:   168 DPTCIDKVLQLHRGSSINKFRLCLY--SKD-----------LHESEITNWVYSALS--KR 212
             D  C    L+ H    +    L L   S D           LHE  IT++ YS +   + 
Sbjct:    73 DEGCC-MFLKSHEAPVLTSLNLKLMTPSHDIDRLLSNIKPILHEITITSYRYSTIRFPRN 131

Query:   213 VQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSVNVT-GEILEFILHNCPL 271
             + + +  +  +L++   ++  +          + L+SL L  V  +  E    +L  CP+
Sbjct:   132 LNVCQTLVVMKLQDKVLVDVSFPVC------FRSLKSLHLTRVKYSCRESFTTLLSACPV 185

Query:   272 LDQLSV----VRSETLVSLKVVGSAIQLKHLRISTC-----YRLNEIKISTPNLLSFKYF 322
             L+ L +    V  + L S  +   ++Q    R+S C     +R    +IS P+L   K  
Sbjct:   186 LEDLDLFIGRVHYDCLNSFTIWVPSLQ----RLSICDESYRFRSTTFEISVPSLKYLKIA 241

Query:   323 GPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSE 382
                   K  +E+ P LV+           +N++  +TS   +LK  + D  D ++ Q   
Sbjct:   242 CQDSCFKF-VEDMPNLVEAHVEANQ-HETKNLLRFLTSV-ERLK--DPDLTDRIFHQLLY 296

Query:   383 HELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF-------DYNGYKVGRRRK 435
              EL    HLH R   LN + +L   S++K  P LQTL +         D     V +   
Sbjct:   297 LEL----HLHKR---LNGDRIL---SLLKHSPNLQTLKLNEKPLRSIKDQPNISVRKPNS 346

Query:   436 VPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNR--TNYSFGCGNAKDCT 493
             VP     HL+ +E  G+ GRP D E+A YIL NA+ L    ++R  ++  F     KD  
Sbjct:   347 VPECLTFHLETLEWQGYAGRPEDKEIAVYILGNALRLNTATISRYFSSSRFRHHQKKDLK 406

Query:   494 KLREAK 499
              + E K
Sbjct:   407 IVEELK 412

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162489 AT5G22660 "AT5G22660" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 9.6e-18, Sum P(2) = 9.6e-18
 Identities = 72/250 (28%), Positives = 126/250 (50%)

Query:   111 EDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFD--GITESSNCISD 168
             ED +S LPD +L  I+S LP + A  TS+LS+RWK LW  T VLD D     +++  IS 
Sbjct:    12 EDRISSLPDHLLSQILSNLPTENAVTTSILSTRWKDLWLSTPVLDIDIDAFDDATTFISF 71

Query:   169 PTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELE-----LWPR 223
              T   + L   + S ++K ++    + +    I  W+  A+ +R+Q  E++     +   
Sbjct:    72 AT---RFLDSFKDSCLHKLQISFQMEAVDMWTIIPWIEDAVKRRIQHLEVDSRIDHMIDT 128

Query:   224 LKNYTFLENCYNNLKSELSGV-KY----LRSLRLFSV--NVTG--EILEFILHNCPLLDQ 274
             L    +L     +L+  L  + ++    L +L++  +  N+    E +E  + +CP+L+ 
Sbjct:   129 LPLTVYLSESLVSLRLHLVMLHRFVFVSLPNLKVMHLEENIYSYAETMEKFISSCPVLED 188

Query:   275 LSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPGQELKLHIEN 334
             L+VVR+        V  A + K LR+S+   LN +K+   +   + Y     + K+ I+ 
Sbjct:   189 LTVVRN--------VDEATE-KVLRVSS-QSLNSLKLVIDSSKCW-YNDDSDDWKVVID- 236

Query:   335 APQLVDISFR 344
             APQLV +S +
Sbjct:   237 APQLVYLSLK 246

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2201512 AT1G66290 "AT1G66290" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 61/219 (27%), Positives = 114/219 (52%)

Query:    94 KRPRNTPATREVKGEIVEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTV 153
             KR  +  ++    G+ V D +S LP+ +++ ++  LP K+  KTSVLS++W+ +W +   
Sbjct:    12 KRSCSPESSDNGSGDEV-DWISDLPEALIVLVLLNLPTKDVIKTSVLSTKWRNIWRYVPR 70

Query:   154 LDFDG--ITESSNCISDPTCIDKVLQLHRGSSINKFRL-CLYSKDLHESEIT---NWVYS 207
             LD D    TE  +  S    ID+ ++ +R   +NKF+L C    D      T    W+Y 
Sbjct:    71 LDLDNRHFTEFDSLAS---FIDRFMRSNR--KVNKFKLRCGSDLDGDVDLATCSWKWIYM 125

Query:   208 ALSKRVQIFELELWPRLKNYTFLENCYN--NLK-SELSGVK----YLRSLRLFSVNVTGE 260
             A+ ++VQ  ++  WP ++ Y  + NC +  +LK SE++  K     L SL++  ++    
Sbjct:   126 AIKRKVQHIDVT-WPGVRIYPEIYNCESLVSLKLSEVTLTKPEFVSLPSLKVLVLDWVEF 184

Query:   261 ILEF----ILHNCPLLDQLSVVRS--ETLVSLKVVGSAI 293
               EF    ++  CP+L+  ++ R   + +  L+V+  ++
Sbjct:   185 YNEFAFDMLMSGCPVLESFTLCRRYLDNVRVLRVISQSL 223

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2039488 AT2G26860 "AT2G26860" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
 Identities = 39/104 (37%), Positives = 57/104 (54%)

Query:   112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFD-GITESSNCISDPT 170
             D +S LPD++L+ I+  LP KE   TS+LS RW++LW +   L F     ES   I D  
Sbjct:     2 DRISGLPDELLVEILHCLPTKEVVSTSILSKRWEFLWLWVPKLTFVMNHYESDLPIQD-- 59

Query:   171 CIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQ 214
              I K L+L +   I  F L  +S      +I +WV + +S+RV+
Sbjct:    60 FITKNLRLLKPQVIESFHLQCFSSSFKPEDIKHWVVTTISRRVR 103

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099019 AT3G58860 "AT3G58860" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
 Identities = 40/112 (35%), Positives = 60/112 (53%)

Query:   112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDF---------DGITES 162
             DL S LPD+++ +I+S LP KEAA TSVL+ +W+YL+ F   LDF         +G  E 
Sbjct:     7 DLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDFLHPQEGKREK 66

Query:   163 SNCI-SDPTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRV 213
                + S    +D+VL L   S I KF L + +  +    +  W+ + L + V
Sbjct:    67 DGILRSFMDFVDRVLALQGASPIKKFSLNVKT-GVDPDRVDRWICNVLQRGV 117

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122754 AT4G10400 "AT4G10400" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 110/400 (27%), Positives = 177/400 (44%)

Query:   112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSNCISDPTC 171
             D +S LPD++L+ I+S +P K A  TS+LS RW++LW + T L F     S +      C
Sbjct:     2 DRISGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSKRYSESEFKRLQC 61

Query:   172 -IDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFL 230
              +D+ L LHR   I  FRL L        +I  WV  A+S+ ++  EL+++    +Y   
Sbjct:    62 FLDRNLPLHRAPVIESFRLVLSDSHFKPEDIRMWVVVAVSRYIR--ELKIYS--SHYGEK 117

Query:   231 ENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHNC-PLLDQLSV--VR-------S 280
             +N    L S L   K L  L+L      G +L+     C P L  L +  VR        
Sbjct:   118 QNI---LPSSLYTCKSLVILKLDG----GVLLDVPRMVCLPSLKTLELKGVRYFKQGSLQ 170

Query:   281 ETLVSLKVVGS-AIQLKH--------LRISTCYRLN-------EIKISTPNLLSFKYFGP 324
               L +  V+    + L H        + + +  RL+       E  I TP+LLSF+    
Sbjct:   171 RLLCNCPVLEDLVVNLSHHDNMGKLTVIVPSLQRLSLSTPSSREFVIDTPSLLSFQLVDR 230

Query:   325 GQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHE 384
                    +      +  ++  V    +++++G ITS    +K L + S  E+   + E  
Sbjct:   231 NDNSHTFLIENMPKLREAYINVPFADIKSLIGSITS----VKRLAISS--EV--GYGEGF 282

Query:   385 LPNLTHLHLRVATL-NRESLLGLASIMKACPFLQTLIVQFDYNGYK-VG-----RRRKVP 437
             + N    HL   TL N+ S   L   +K  P L+ L++  + + ++ +G     +   VP
Sbjct:   283 IFN----HLEELTLWNKYSSNLLVWFLKNSPNLRELMLVSETDDHENLGMLSWNQPSIVP 338

Query:   438 RHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVV 477
                   L+      +LGRP D ++A YIL+NA  L    +
Sbjct:   339 ECMLSSLQKFTWFKYLGRPQDRDIAVYILKNACRLRTATI 378

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2126911 AT4G00160 "AT4G00160" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
 Identities = 76/270 (28%), Positives = 120/270 (44%)

Query:   244 VKYLRSLRLFSVNVTGEI-LEFILHNCPLLDQLSVVRSETL-VSLKVVGSAIQLKHLRIS 301
             +K LR+L L  V+   E  +  +L  CP+L++L V+R E   + +  +     LK L I+
Sbjct:   165 MKSLRTLHLELVSYKDESSIRNLLSGCPILEELLVIRGEDSDIEVFTIDEVPSLKRLTIN 224

Query:   302 TCYRLNEIKISTPNLLSFKYFGPGQELKL--HIENAPQLVDIS-FRGVMLTRVRNVVGPI 358
               +   E      N  S KY    ++L+      NAP+L++ + F G  +T   N +G +
Sbjct:   225 DDHDGQEFWGYVINAPSLKYLLI-EDLRCPGFCLNAPELMEANIFDGTSITN-DNFLGYL 282

Query:   359 TSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQT 418
             TS    L  L L      Y   S      L  L +    ++   LL L  +++  P LQ 
Sbjct:   283 TSVKRLL--LNLSPWKITYPTGSIFY--QLVSLEMYTREIDWWDLLTL--MLEHSPKLQV 336

Query:   419 L-----IVQFDYNGYKVGRRRK---VPRHSHQHLKLVELHGF-LGRPIDLELAFYILENA 469
             L      V+F  NG   G+  +   VP     HL+      F  GR  + E+A YIL+NA
Sbjct:   337 LKLTDNCVKFHKNGLPGGKWNEPKYVPECLLSHLETFVWRRFDWGREEEKEIATYILKNA 396

Query:   470 MTLEKMVVNRTNYSFGCGNAKDCTKLREAK 499
               L     N+  +S    N+++  KL+E +
Sbjct:   397 RRL-----NKATFSTNPVNSEELDKLKERR 421

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2201537 AT1G66320 "AT1G66320" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 66/236 (27%), Positives = 115/236 (48%)

Query:   117 LPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFD--GITESSNCISDPTCIDK 174
             LP+ +L  ++  +P K+  KTSV+S  W++LW     LD D    T+    +S    ID 
Sbjct:    35 LPESLLFQVLLNIPTKDLVKTSVVSPEWRHLWRCVPGLDLDEADFTQFDTLVS---FIDS 91

Query:   175 VLQLHRGSSINKFRLCLY-----SKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTF 229
              L ++R SS+NKF+L +Y      K+ + + +  W+ + + + VQ  +L  W  ++    
Sbjct:    92 FLSINRESSLNKFKLRIYCNHDRDKETNNAHMARWISAIVEQNVQHVDLT-WLPVEVPPI 150

Query:   230 LENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLS---VVRSETLVSL 286
             L  C +           L +LRL  V +    LEF+    PL+  L+   V+ +  L   
Sbjct:   151 LYLCES-----------LVTLRLCGVVLAN--LEFMY--LPLVKVLALEWVIFANELALE 195

Query:   287 KVVGSAIQLKHLRISTCY--RLNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVD 340
             K++   + L+ LR   C    +N +++ + +LLSF Y+GP     LH ++    +D
Sbjct:   196 KLISGCLVLESLRFCKCSLDNVNVLRVRSQSLLSFNYYGPSSR-DLHFKDLAVTID 250

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	509
pfam08387	51	pfam08387, FBD, FBD	3e-06
pfam00646	48	pfam00646, F-box, F-box domain	1e-04
smart00579	72	smart00579, FBD, domain in FBox and BRCT domain co	0.002
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	0.003

>gnl|CDD|203925 pfam08387, FBD, FBD

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 20/42 (47%), Positives = 25/42 (59%)

Query: 436 VPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVV 477
           VP      L+ VE  G+ G   +LELA YILENA  L+KM +
Sbjct: 8   VPECLLSSLETVEWRGYRGEEEELELAKYILENARVLKKMTI 49

This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors. Length = 51

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWT 149
             +  LPDD+L+ I+SRL  K+  + S++S RW+ L  
Sbjct: 1   FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVD 38

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|214730 smart00579, FBD, domain in FBox and BRCT domain containing plant proteins

 Score = 36.7 bits (86), Expect = 0.002
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 443 HLKLVELHGFLGRPIDLELAFYILENAMTLEKMVV 477
            L+++E+ G+ G   + EL  Y LENA  L+K+ +
Sbjct: 6   SLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTI 40

Length = 72

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 117 LPDDILINIISRLPLKEAAKTSVLSSRWKYLW 148
           LPD+IL  I+S+L  K+  +   +S +W+ L 
Sbjct: 1   LPDEILEEILSKLDPKDLLRLRKVSRKWRSLI 32

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	509
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.65
KOG4341	483	consensus F-box protein containing LRR [General fu	99.49
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	99.09
smart00579	72	FBD domain in FBox and BRCT domain containing plan	98.91
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.6
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.13
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.01
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.97
KOG4341	483	consensus F-box protein containing LRR [General fu	97.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.79
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.73
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.56
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.5
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.2
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.13
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.09
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	97.09
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.81
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.67
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.44
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.39
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.12
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	95.93
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.78
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	95.27
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	94.5
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	94.37
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	94.18
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	93.73
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	93.55
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	93.26
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	92.71
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.57
KOG2997	366	consensus F-box protein FBX9 [General function pre	91.13
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	91.06
KOG2123	388	consensus Uncharacterized conserved protein [Funct	89.78
PRK15386	426	type III secretion protein GogB; Provisional	89.42
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	89.08
KOG2982	418	consensus Uncharacterized conserved protein [Funct	88.62
PRK15386	426	type III secretion protein GogB; Provisional	88.18
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.3
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	86.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	86.73
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	85.75
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.6
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	84.94
PF13013	109	F-box-like_2: F-box-like domain	82.42
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	81.41
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	80.02

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=2.5e-17  Score=154.60  Aligned_cols=264  Identities=22%  Similarity=0.251  Sum_probs=156.2

Q ss_pred             CCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhh------hcccCceeEEeCCCCCCCCCChHHHHHHHhccccCCccceE
Q 010478          114 MSLLPDDILINIISRLPLKEAAKTSVLSSRWKY------LWTFTTVLDFDGITESSNCISDPTCIDKVLQLHRGSSINKF  187 (509)
Q Consensus       114 is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~------lw~~~p~L~f~~~~~~~~~~~~~~~v~~~L~~~~~~~l~~l  187 (509)
                      |..|||||+..||+.|+.+|..+.+.|||||.+      +|..   +++.+..+  ...    ...+++.  .|  |..|
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i--~p~----~l~~l~~--rg--V~v~  164 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNI--HPD----VLGRLLS--RG--VIVF  164 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCcc--Chh----HHHHHHh--CC--eEEE
Confidence            789999999999999999999999999999987      5765   55554443  111    1122211  12  4445


Q ss_pred             EEEeecCCCChhhHHHHHHH--HhccCcEEEEEEecCCCc----ceeeeccc-----cccccc------CCccCcCCcEE
Q 010478          188 RLCLYSKDLHESEITNWVYS--ALSKRVQIFELELWPRLK----NYTFLENC-----YNNLKS------ELSGVKYLRSL  250 (509)
Q Consensus       188 ~l~~~~~~~~~~~~~~wl~~--a~~~~v~~L~L~~~~~~~----~~~~p~~~-----~~~L~~------~~~~~p~Lk~L  250 (509)
                      ++.-.. ... .   +...+  ..+.++|+++|+...-..    ...-+|..     ...++.      ..+...+|+.|
T Consensus       165 Rlar~~-~~~-p---rlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l  239 (419)
T KOG2120|consen  165 RLARSF-MDQ-P---RLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL  239 (419)
T ss_pred             Ecchhh-hcC-c---hhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence            442110 001 1   11121  223467788776543100    00011110     111111      23456778888


Q ss_pred             EEeeEE-EChhhHHHHHhCCccccceeeeccccee---eEEEecccccceEEEEecccC------ccEEEEECCceeEEE
Q 010478          251 RLFSVN-VTGEILEFILHNCPLLDQLSVVRSETLV---SLKVVGSAIQLKHLRISTCYR------LNEIKISTPNLLSFK  320 (509)
Q Consensus       251 ~L~~v~-~~~~~l~~lls~CP~Le~L~L~~c~~~~---~l~i~~~~~~Lk~L~l~~c~~------l~~l~i~aP~L~~L~  320 (509)
                      +|+.+. |++..+.-++++|..|.+|+|++|...+   .+.|.+-+++|+.|.+.+|..      +..+.-.+|+|..|+
T Consensus       240 nlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD  319 (419)
T KOG2120|consen  240 NLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD  319 (419)
T ss_pred             ccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence            887775 7777777788888888888888886543   222333346777777777752      122223456666666


Q ss_pred             EecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhh--hhccCCCCCCcccEEEEEeecc
Q 010478          321 YFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDEL--YAQFSEHELPNLTHLHLRVATL  398 (509)
Q Consensus       321 ~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~--~~~~~~~~f~~Lk~L~L~~~~~  398 (509)
                      ++++.                        .+.+.+...+..++.|++|.++.|+.+  ...+.+...|.|++|++.++. 
T Consensus       320 LSD~v------------------------~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v-  374 (419)
T KOG2120|consen  320 LSDSV------------------------MLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV-  374 (419)
T ss_pred             ccccc------------------------ccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc-
Confidence            65554                        111122234457888999999999877  223337788899999995543 


Q ss_pred             CccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          399 NRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       399 ~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                         .+..+.-+.+.||+|+.-.-.+
T Consensus       375 ---sdt~mel~~e~~~~lkin~q~~  396 (419)
T KOG2120|consen  375 ---SDTTMELLKEMLSHLKINCQHF  396 (419)
T ss_pred             ---CchHHHHHHHhCccccccceee
Confidence               3335777888999887655444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.49  E-value=2e-15  Score=148.02  Aligned_cols=344  Identities=18%  Similarity=0.201  Sum_probs=209.7

Q ss_pred             ccCC-CCcHHHHHHHHcCCChhhHHHHHhhhhhhhhh------cccCceeEEeCCCCCCCCCChHHHHHHHhccccCCcc
Q 010478          112 DLMS-LLPDDILINIISRLPLKEAAKTSVLSSRWKYL------WTFTTVLDFDGITESSNCISDPTCIDKVLQLHRGSSI  184 (509)
Q Consensus       112 D~is-~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~l------w~~~p~L~f~~~~~~~~~~~~~~~v~~~L~~~~~~~l  184 (509)
                      +-++ .||.|++..|||+|+++...|++.+|+-|.-+      |....-.+|..+     .+  ...|. .+..+.|.++
T Consensus        69 ~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rD-----v~--g~VV~-~~~~Rcgg~l  140 (483)
T KOG4341|consen   69 NSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRD-----VD--GGVVE-NMISRCGGFL  140 (483)
T ss_pred             ccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhc-----CC--Cccee-hHhhhhcccc
Confidence            3344 59999999999999999999999999999764      665433333211     11  12222 2334455669


Q ss_pred             ceEEEEeecCCCChhhHHHHHHHH-hccCcEEEEEEecCCCcceeeecccccccccCCccCcCCcEEEEee-EEEChhhH
Q 010478          185 NKFRLCLYSKDLHESEITNWVYSA-LSKRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFS-VNVTGEIL  262 (509)
Q Consensus       185 ~~l~l~~~~~~~~~~~~~~wl~~a-~~~~v~~L~L~~~~~~~~~~~p~~~~~~L~~~~~~~p~Lk~L~L~~-v~~~~~~l  262 (509)
                      +.++++...+..+..    .-.++ ..+++++|.+..+     +.+...++.+   ....|+.|+.|.|.. ..+++..+
T Consensus       141 k~LSlrG~r~v~~ss----lrt~~~~CpnIehL~l~gc-----~~iTd~s~~s---la~~C~~l~~l~L~~c~~iT~~~L  208 (483)
T KOG4341|consen  141 KELSLRGCRAVGDSS----LRTFASNCPNIEHLALYGC-----KKITDSSLLS---LARYCRKLRHLNLHSCSSITDVSL  208 (483)
T ss_pred             ccccccccccCCcch----hhHHhhhCCchhhhhhhcc-----eeccHHHHHH---HHHhcchhhhhhhcccchhHHHHH
Confidence            999997764322211    11222 2358888876543     2222222211   235688999999988 45888889


Q ss_pred             HHHHhCCccccceeeecccceeeEE---EecccccceEEEEecccCcc-----EEEEECCceeEEEEecCCccce----e
Q 010478          263 EFILHNCPLLDQLSVVRSETLVSLK---VVGSAIQLKHLRISTCYRLN-----EIKISTPNLLSFKYFGPGQELK----L  330 (509)
Q Consensus       263 ~~lls~CP~Le~L~L~~c~~~~~l~---i~~~~~~Lk~L~l~~c~~l~-----~l~i~aP~L~~L~~~g~~~~~~----~  330 (509)
                      +.+..+||+|++|++++|+.+..-.   +..++..|+.+...+|...+     .++-.++.+..+++..+..-.+    .
T Consensus       209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~  288 (483)
T KOG4341|consen  209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL  288 (483)
T ss_pred             HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence            8899999999999999998765311   22344557777666776421     1222233333333222220000    0


Q ss_pred             eecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhh-hhccC--CCCCCcccEEEEEeeccCccCHHHHH
Q 010478          331 HIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDEL-YAQFS--EHELPNLTHLHLRVATLNRESLLGLA  407 (509)
Q Consensus       331 ~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~-~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~  407 (509)
                      .--.+..|+.+....... ..+..+..+..++++|+.|.+..|..+ ...+.  ..+++.|+.|+++.+...  .+..++
T Consensus       289 i~~~c~~lq~l~~s~~t~-~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~--~d~tL~  365 (483)
T KOG4341|consen  289 IACGCHALQVLCYSSCTD-ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI--TDGTLA  365 (483)
T ss_pred             HhhhhhHhhhhcccCCCC-CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee--hhhhHh
Confidence            011133344443333111 334556677889999999999988876 22222  678899999999665543  333689


Q ss_pred             HHhhcCCCCcEEEEEEeecCCccCCcccc--CccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEEEecCC
Q 010478          408 SIMKACPFLQTLIVQFDYNGYKVGRRRKV--PRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRTNY  482 (509)
Q Consensus       408 ~lL~~~P~Le~L~i~~~~~~~~~~~~~~~--p~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~~~  482 (509)
                      ++-.+||.|++|.++..+.... ...+.+  -.|.+.+|..+++.+......  +..+ .+.+.+.||++.+..-..
T Consensus       366 sls~~C~~lr~lslshce~itD-~gi~~l~~~~c~~~~l~~lEL~n~p~i~d--~~Le-~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  366 SLSRNCPRLRVLSLSHCELITD-EGIRHLSSSSCSLEGLEVLELDNCPLITD--ATLE-HLSICRNLERIELIDCQD  438 (483)
T ss_pred             hhccCCchhccCChhhhhhhhh-hhhhhhhhccccccccceeeecCCCCchH--HHHH-HHhhCcccceeeeechhh
Confidence            9999999999999984322111 111111  247788899999988877653  2333 456778999977665433

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=99.09  E-value=9.2e-11  Score=83.42  Aligned_cols=47  Identities=47%  Similarity=0.693  Sum_probs=44.4

Q ss_pred             CccccCccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEEE
Q 010478          432 RRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVN  478 (509)
Q Consensus       432 ~~~~~p~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~  478 (509)
                      +...+|+|..+|||.|+|.||.|.++|++|++||++||++||+|+|.
T Consensus         4 ~~~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~   50 (51)
T PF08387_consen    4 EPSSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS   50 (51)
T ss_pred             CCCCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence            45678999999999999999999999999999999999999999996

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=98.91  E-value=7.1e-10  Score=85.47  Aligned_cols=69  Identities=25%  Similarity=0.286  Sum_probs=59.0

Q ss_pred             ccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEEEecCCccCc--cCCCccccchhhhhhcccEE
Q 010478          438 RHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRTNYSFGC--GNAKDCTKLREAKLRQGVEL  506 (509)
Q Consensus       438 ~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~~~~~~~--~~~~~~~~l~~~~~~~~v~~  506 (509)
                      +|..+|||.|+|.||.|..+|+++++||++||+.||+|+|...+.....  ...+++..++++|.+++|.+
T Consensus         1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~~~aS~~c~i~~   71 (72)
T smart00579        1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSLPRASSSCQVQF   71 (72)
T ss_pred             CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhCcCCCCceEEEe
Confidence            4788999999999999999999999999999999999999987754332  23567888899999988754

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.60  E-value=3.8e-08  Score=68.92  Aligned_cols=35  Identities=34%  Similarity=0.655  Sum_probs=30.9

Q ss_pred             CCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhhhc
Q 010478          114 MSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLW  148 (509)
Q Consensus       114 is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~lw  148 (509)
                      |+.||+||+.+||++|+.+|.++++.|||+|+++-
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999853

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.13  E-value=8.8e-07  Score=62.19  Aligned_cols=37  Identities=41%  Similarity=0.600  Sum_probs=31.5

Q ss_pred             CCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhhhccc
Q 010478          114 MSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTF  150 (509)
Q Consensus       114 is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~lw~~  150 (509)
                      |++||+|++.+||++|+.+|.++.+.|||+|+++...
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            6789999999999999999999999999999987654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.01  E-value=6.2e-06  Score=55.55  Aligned_cols=34  Identities=41%  Similarity=0.707  Sum_probs=31.6

Q ss_pred             CcHHHHHHHHcCCChhhHHHHHhhhhhhhhhccc
Q 010478          117 LPDDILINIISRLPLKEAAKTSVLSSRWKYLWTF  150 (509)
Q Consensus       117 LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~lw~~  150 (509)
                      ||+|++.+||++|+.+|..+++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=2.2e-07  Score=88.40  Aligned_cols=182  Identities=21%  Similarity=0.236  Sum_probs=89.8

Q ss_pred             cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE--EEecccccceEEEEecccCccEEEEECCceeEEEEe
Q 010478          245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL--KVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYF  322 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l--~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~  322 (509)
                      .+|+.|+|++..++...+..+++.|..|+.|+|++-.-.+.+  .|+.. ..|+.|++..|..+....            
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~------------  251 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENA------------  251 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhH------------
Confidence            357777777777777777777777777777777765433221  23322 456666666665322111            


Q ss_pred             cCCccceeeecCCCCceEEEEEeccchhhhhhhcccccC-CCCccEEEEeechhh--hhccC--CCCCCcccEEEEEeec
Q 010478          323 GPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSC-FPQLKTLELDSCDEL--YAQFS--EHELPNLTHLHLRVAT  397 (509)
Q Consensus       323 g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~-l~~L~~L~L~~~~~~--~~~~~--~~~f~~Lk~L~L~~~~  397 (509)
                           ....+.++.+|.++.+..++..  ...++.+... -++++.|.|+++...  ...+.  ...+++|.+|+|+.+.
T Consensus       252 -----~~ll~~scs~L~~LNlsWc~l~--~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  252 -----LQLLLSSCSRLDELNLSWCFLF--TEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             -----HHHHHHhhhhHhhcCchHhhcc--chhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence                 2223445555555555442210  1111111111 134555566544322  11111  4556666666664432


Q ss_pred             cCccCHHHHHHHhhcCCCCcEEEEEEeecCCc--cCCccccCccccCCccEEEEecccC
Q 010478          398 LNRESLLGLASIMKACPFLQTLIVQFDYNGYK--VGRRRKVPRHSHQHLKLVELHGFLG  454 (509)
Q Consensus       398 ~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~--~~~~~~~p~c~~~~Lk~V~i~~f~g  454 (509)
                      .  ... ++...+-.+|.|+.|.+.-+|...+  .-+..     ....|+++.+.|+..
T Consensus       325 ~--l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~-----s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  325 M--LKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELN-----SKPSLVYLDVFGCVS  375 (419)
T ss_pred             c--cCc-hHHHHHHhcchheeeehhhhcCCChHHeeeec-----cCcceEEEEeccccC
Confidence            2  111 3555555666666666665543222  11111     234566666666544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.91  E-value=2.1e-07  Score=92.32  Aligned_cols=115  Identities=16%  Similarity=0.124  Sum_probs=70.0

Q ss_pred             ccccCCCCccEEEEeechhh-hhc-cC-CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCc
Q 010478          357 PITSCFPQLKTLELDSCDEL-YAQ-FS-EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRR  433 (509)
Q Consensus       357 ~l~~~l~~L~~L~L~~~~~~-~~~-~~-~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~  433 (509)
                      .....++-+..+++..|..+ ... .. ...+..|+.|...  .+...++..+..+-+.|++|+.|.++....   ..+.
T Consensus       262 ~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s--~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~---fsd~  336 (483)
T KOG4341|consen  262 KAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYS--SCTDITDEVLWALGQHCHNLQVLELSGCQQ---FSDR  336 (483)
T ss_pred             HHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhccc--CCCCCchHHHHHHhcCCCceEEEeccccch---hhhh
Confidence            33355556666666666554 111 11 4456677888773  344567777889999999999999988521   0010


Q ss_pred             c-ccCccccCCccEEEEecc-cCCccHHHHHHHHHhcCccCCcEEEEe
Q 010478          434 R-KVPRHSHQHLKLVELHGF-LGRPIDLELAFYILENAMTLEKMVVNR  479 (509)
Q Consensus       434 ~-~~p~c~~~~Lk~V~i~~f-~g~~~e~~l~~~lL~na~~Le~m~I~~  479 (509)
                      . .+-.-...+|+.+.+.+. .+...   -+..+..|++.|+++.++.
T Consensus       337 ~ft~l~rn~~~Le~l~~e~~~~~~d~---tL~sls~~C~~lr~lslsh  381 (483)
T KOG4341|consen  337 GFTMLGRNCPHLERLDLEECGLITDG---TLASLSRNCPRLRVLSLSH  381 (483)
T ss_pred             hhhhhhcCChhhhhhcccccceehhh---hHhhhccCCchhccCChhh
Confidence            0 000112456777777663 33332   2456788999999999983

>PLN03210 Resistant to P

Probab=97.79  E-value=3.2e-05  Score=90.73  Aligned_cols=83  Identities=19%  Similarity=0.217  Sum_probs=46.9

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEe-cccccceEEEEecccCccEEEE--ECCcee
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVV-GSAIQLKHLRISTCYRLNEIKI--STPNLL  317 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~-~~~~~Lk~L~l~~c~~l~~l~i--~aP~L~  317 (509)
                      ...+++|+.|+|++...-. .+.. ++.+++||.|+|.+|..+..+.-. ..+++|+.|.+.+|..++.+..  ..++|+
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~  707 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLY  707 (1153)
T ss_pred             cccCCCCCEEECCCCCCcC-cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCC
Confidence            4567888888887653111 0111 456788888888887655432111 1235677777777765544332  345566


Q ss_pred             EEEEecCC
Q 010478          318 SFKYFGPG  325 (509)
Q Consensus       318 ~L~~~g~~  325 (509)
                      .|.+.|+.
T Consensus       708 ~L~Lsgc~  715 (1153)
T PLN03210        708 RLNLSGCS  715 (1153)
T ss_pred             EEeCCCCC
Confidence            66665553

syringae 6; Provisional

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.79  E-value=1.2e-05  Score=78.43  Aligned_cols=255  Identities=18%  Similarity=0.169  Sum_probs=140.4

Q ss_pred             cceEEEEeecCCCChhhHHHHHHHHhcc--CcEEEEEEecCC-CcceeeecccccccccCCccCcCCcEEEEeeEEECh-
Q 010478          184 INKFRLCLYSKDLHESEITNWVYSALSK--RVQIFELELWPR-LKNYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTG-  259 (509)
Q Consensus       184 l~~l~l~~~~~~~~~~~~~~wl~~a~~~--~v~~L~L~~~~~-~~~~~~p~~~~~~L~~~~~~~p~Lk~L~L~~v~~~~-  259 (509)
                      +..+.++   ++..+.-..+|+..+.+.  .+++.+++-... ...-..|. ....|-....++|.|++|+|+.-.|.. 
T Consensus        32 ~~~l~ls---gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e-~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   32 LTKLDLS---GNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPE-ALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             eEEEecc---CCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHH-HHHHHHHHHhcCCceeEeeccccccCcc
Confidence            6666664   334455677888777664  344443321100 00001110 011111134578899999999887765 


Q ss_pred             --hhHHHHHhCCccccceeeeccccee--eEEEecccccceEEEEecccCccEEEEECCceeEEEEecCCc------cce
Q 010478          260 --EILEFILHNCPLLDQLSVVRSETLV--SLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPGQ------ELK  329 (509)
Q Consensus       260 --~~l~~lls~CP~Le~L~L~~c~~~~--~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~g~~~------~~~  329 (509)
                        +.+..++++|..||+|.|.+|-.-.  .-.+.   ..|..|.      .....-+.|.|++|.+.....      ...
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~---~al~~l~------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A  178 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG---RALFELA------VNKKAASKPKLRVFICGRNRLENGGATALA  178 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH---HHHHHHH------HHhccCCCcceEEEEeeccccccccHHHHH
Confidence              4589999999999999999994211  10111   1121111      111222467777777654431      112


Q ss_pred             eeecCCCCceEEEEEecc-chhhhhhhcccccCCCCccEEEEeech---hhhhccC--CCCCCcccEEEEEeeccCccCH
Q 010478          330 LHIENAPQLVDISFRGVM-LTRVRNVVGPITSCFPQLKTLELDSCD---ELYAQFS--EHELPNLTHLHLRVATLNRESL  403 (509)
Q Consensus       330 ~~~~~~~~L~~l~i~~~~-~~~~~~~~~~l~~~l~~L~~L~L~~~~---~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~  403 (509)
                      ..+...|.|+++.+..+. .......+..-+..+++|+.|+|....   +....+.  ++.+++|+.|++..+.....+.
T Consensus       179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga  258 (382)
T KOG1909|consen  179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA  258 (382)
T ss_pred             HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH
Confidence            245566888888887721 111112233344678999999998322   1111222  7888999999997665544454


Q ss_pred             HHHH-HHhhcCCCCcEEEEEEeecCCccCCccccCcc--ccCCccEEEEeccc
Q 010478          404 LGLA-SIMKACPFLQTLIVQFDYNGYKVGRRRKVPRH--SHQHLKLVELHGFL  453 (509)
Q Consensus       404 ~~l~-~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c--~~~~Lk~V~i~~f~  453 (509)
                      .++. .+-+..|+|+.|.+.+..-...-.  ..+..|  -..+|+.+.+.|.+
T Consensus       259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~--~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  259 IAFVDALKESAPSLEVLELAGNEITRDAA--LALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHHHHHHhccCCCCceeccCcchhHHHHH--HHHHHHHhcchhhHHhcCCccc
Confidence            4444 466678999999998852110000  000011  14668888887754

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.73  E-value=2.7e-05  Score=77.85  Aligned_cols=231  Identities=17%  Similarity=0.054  Sum_probs=104.8

Q ss_pred             ccCcCCcEEEEeeEEEC--hhh---HHHHHhCCccccceeeecccceeeE-----EEecccccceEEEEecccCcc----
Q 010478          242 SGVKYLRSLRLFSVNVT--GEI---LEFILHNCPLLDQLSVVRSETLVSL-----KVVGSAIQLKHLRISTCYRLN----  307 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~--~~~---l~~lls~CP~Le~L~L~~c~~~~~l-----~i~~~~~~Lk~L~l~~c~~l~----  307 (509)
                      ..+++|++|.+++..+.  ...   +...+..++.|++|+|.+|......     .+... ++|++|++.+|..-.    
T Consensus        48 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~  126 (319)
T cd00116          48 RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLR  126 (319)
T ss_pred             hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHH
Confidence            35677888888877765  232   3445566788888888887642110     11111 348888887775210    


Q ss_pred             EE---EEEC-CceeEEEEecCCcc------ceeeecCCCCceEEEEEeccchh-hhhhhcccccCCCCccEEEEeechh-
Q 010478          308 EI---KIST-PNLLSFKYFGPGQE------LKLHIENAPQLVDISFRGVMLTR-VRNVVGPITSCFPQLKTLELDSCDE-  375 (509)
Q Consensus       308 ~l---~i~a-P~L~~L~~~g~~~~------~~~~~~~~~~L~~l~i~~~~~~~-~~~~~~~l~~~l~~L~~L~L~~~~~-  375 (509)
                      .+   --.. |+|+.|.+.++.-.      ....+..+++|+.+++....... ....+...+..+++|++|.++.+.- 
T Consensus       127 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence            00   0012 66777777665410      00112334456665555421110 0000111122335666666654321 


Q ss_pred             -h-hhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhc----CCCCcEEEEEEeecCC-ccCCc-cccCccccCCcc
Q 010478          376 -L-YAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKA----CPFLQTLIVQFDYNGY-KVGRR-RKVPRHSHQHLK  445 (509)
Q Consensus       376 -~-~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~----~P~Le~L~i~~~~~~~-~~~~~-~~~p~c~~~~Lk  445 (509)
                       . ...+.  ...+++|++|++..+.   ....++..+.+.    .+.|+.|++....-.. ....+ ..++.  ..+|+
T Consensus       207 ~~~~~~l~~~~~~~~~L~~L~ls~n~---l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~--~~~L~  281 (319)
T cd00116         207 DEGASALAETLASLKSLEVLNLGDNN---LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE--KESLL  281 (319)
T ss_pred             hHHHHHHHHHhcccCCCCEEecCCCc---CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhc--CCCcc
Confidence             0 01111  4445666666663322   222233333333    2566666665531000 00000 01111  14555


Q ss_pred             EEEEeccc-CCccHHHHHHHHHhcCccCCcEEEE
Q 010478          446 LVELHGFL-GRPIDLELAFYILENAMTLEKMVVN  478 (509)
Q Consensus       446 ~V~i~~f~-g~~~e~~l~~~lL~na~~Le~m~I~  478 (509)
                      .+.+.+-. +.+.+..+++-+..+.+.|+.+.|.
T Consensus       282 ~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~  315 (319)
T cd00116         282 ELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK  315 (319)
T ss_pred             EEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence            55554421 2233455555555555666655543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=97.56  E-value=0.0001  Score=86.49  Aligned_cols=100  Identities=19%  Similarity=0.177  Sum_probs=60.5

Q ss_pred             cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEE---ECCceeEE
Q 010478          243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKI---STPNLLSF  319 (509)
Q Consensus       243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i---~aP~L~~L  319 (509)
                      .+.+|+.|+|.+..+..  +..-+..+++|+.|+|.+|..+..+.--+.+++|+.|.+.+|..+..+..   ..++|+.|
T Consensus       609 ~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        609 RPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             CccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            45688888887765532  22223568888888888876554332223347888888888876554432   35778888


Q ss_pred             EEecCCc--cceeeecCCCCceEEEEEe
Q 010478          320 KYFGPGQ--ELKLHIENAPQLVDISFRG  345 (509)
Q Consensus       320 ~~~g~~~--~~~~~~~~~~~L~~l~i~~  345 (509)
                      .+.++..  ..+.. .++++|+.+.+..
T Consensus       687 ~L~~c~~L~~Lp~~-i~l~sL~~L~Lsg  713 (1153)
T PLN03210        687 DMSRCENLEILPTG-INLKSLYRLNLSG  713 (1153)
T ss_pred             eCCCCCCcCccCCc-CCCCCCCEEeCCC
Confidence            8877641  11111 1455666666554

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.50  E-value=8.1e-05  Score=86.29  Aligned_cols=171  Identities=19%  Similarity=0.126  Sum_probs=99.2

Q ss_pred             cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE-EEecccccceEEEEecccCccEE---EEECCceeE
Q 010478          243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRISTCYRLNEI---KISTPNLLS  318 (509)
Q Consensus       243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~c~~l~~l---~i~aP~L~~  318 (509)
                      .+++|+.|+|++..+.+..-   ....+.|+.|+|.++.....+ ..-..+++|+.|++.++.....+   --..++|++
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  192 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF  192 (968)
T ss_pred             cCCCCCEEECcCCccccccC---ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence            56788888887766643211   134677888888877532211 11123478888888877522211   124677888


Q ss_pred             EEEecCCc--cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEE
Q 010478          319 FKYFGPGQ--ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLR  394 (509)
Q Consensus       319 L~~~g~~~--~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~  394 (509)
                      |.+.++.-  ..+-.++++++|+.+++.....   ...+...+..+++|++|++..+. +....|  +..+++|++|+|.
T Consensus       193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~  268 (968)
T PLN00113        193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNL---SGEIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLY  268 (968)
T ss_pred             eeccCCCCcCcCChHHcCcCCccEEECcCCcc---CCcCChhHhcCCCCCEEECcCce-eccccChhHhCCCCCCEEECc
Confidence            88876651  1233456777888887765211   11112223567888888887443 222333  6677888988885


Q ss_pred             eeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478          395 VATLNRESLLGLASIMKACPFLQTLIVQFD  424 (509)
Q Consensus       395 ~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~  424 (509)
                      .+....    .+..-+...++|+.|++...
T Consensus       269 ~n~l~~----~~p~~l~~l~~L~~L~Ls~n  294 (968)
T PLN00113        269 QNKLSG----PIPPSIFSLQKLISLDLSDN  294 (968)
T ss_pred             CCeeec----cCchhHhhccCcCEEECcCC
Confidence            432211    12333456788999988653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.20  E-value=0.00045  Score=69.01  Aligned_cols=220  Identities=17%  Similarity=0.092  Sum_probs=114.5

Q ss_pred             cCcCCcEEEEeeEEEChhh---HHHHHhCCccccceeeeccccee---eE-EEecccccceEEEEecccCccEEEEECCc
Q 010478          243 GVKYLRSLRLFSVNVTGEI---LEFILHNCPLLDQLSVVRSETLV---SL-KVVGSAIQLKHLRISTCYRLNEIKISTPN  315 (509)
Q Consensus       243 ~~p~Lk~L~L~~v~~~~~~---l~~lls~CP~Le~L~L~~c~~~~---~l-~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~  315 (509)
                      .+++|+.|.|.++.+++..   +...+...|.|++|.+.++....   .+ .+.....                  ..++
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~------------------~~~~   82 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT------------------KGCG   82 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH------------------hcCc
Confidence            4566888888888876653   45556667778888887654221   00 0000000                  1334


Q ss_pred             eeEEEEecCCcc--ceeeecCC---CCceEEEEEeccch-hhhhhhcccccCC-CCccEEEEeechhh---hhccC--CC
Q 010478          316 LLSFKYFGPGQE--LKLHIENA---PQLVDISFRGVMLT-RVRNVVGPITSCF-PQLKTLELDSCDEL---YAQFS--EH  383 (509)
Q Consensus       316 L~~L~~~g~~~~--~~~~~~~~---~~L~~l~i~~~~~~-~~~~~~~~l~~~l-~~L~~L~L~~~~~~---~~~~~--~~  383 (509)
                      |+.|.+.++.-.  ....+...   ++|+++++...... .....+...+..+ ++|+.|.+..+.-.   ...+.  +.
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  162 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR  162 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence            444444433310  01111122   56999999873221 1111122233455 89999999865411   01111  55


Q ss_pred             CCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecC-CccCCccccCccccCCccEEEEecccCCc-cHHHH
Q 010478          384 ELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNG-YKVGRRRKVPRHSHQHLKLVELHGFLGRP-IDLEL  461 (509)
Q Consensus       384 ~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~-~~~~~~~~~p~c~~~~Lk~V~i~~f~g~~-~e~~l  461 (509)
                      .+++|++|++..+...+.....+...+...++|+.|++....-. .....+... -....+|+.+.+.+..-.. .-..+
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET-LASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH-hcccCCCCEEecCCCcCchHHHHHH
Confidence            66789999996543322222234444556679999999764210 000000000 1124789999998754333 22234


Q ss_pred             HHHHHhcCccCCcEEEEecC
Q 010478          462 AFYILENAMTLEKMVVNRTN  481 (509)
Q Consensus       462 ~~~lL~na~~Le~m~I~~~~  481 (509)
                      +..+....+.|+.+.+....
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         242 ASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHHHhccCCCceEEEccCCC
Confidence            44444456889999987543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.13  E-value=0.00031  Score=81.46  Aligned_cols=59  Identities=19%  Similarity=0.182  Sum_probs=30.9

Q ss_pred             cCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          360 SCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       360 ~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      ..+++|+.|.+..+. +....+  ...+++|+.|+|..+....    .+...+...++|+.|++..
T Consensus       305 ~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~~~~L~~L~Ls~  365 (968)
T PLN00113        305 IQLQNLEILHLFSNN-FTGKIPVALTSLPRLQVLQLWSNKFSG----EIPKNLGKHNNLTVLDLST  365 (968)
T ss_pred             cCCCCCcEEECCCCc-cCCcCChhHhcCCCCCEEECcCCCCcC----cCChHHhCCCCCcEEECCC
Confidence            455666666665322 112222  4556677777774332110    1334455667777777754

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.09  E-value=0.00012  Score=77.55  Aligned_cols=39  Identities=23%  Similarity=0.471  Sum_probs=28.7

Q ss_pred             ccCCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhhhccc
Q 010478          112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTF  150 (509)
Q Consensus       112 D~is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~lw~~  150 (509)
                      +.....|++....+....+..+...+..+.++|......
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (482)
T KOG1947|consen   43 RFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS   81 (482)
T ss_pred             eeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence            446677888888888888877777777888888765443

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.09  E-value=0.00069  Score=40.55  Aligned_cols=25  Identities=44%  Similarity=0.638  Sum_probs=22.8

Q ss_pred             CCcEEEEeeEEEChh-hHHHHHhCCc
Q 010478          246 YLRSLRLFSVNVTGE-ILEFILHNCP  270 (509)
Q Consensus       246 ~Lk~L~L~~v~~~~~-~l~~lls~CP  270 (509)
                      +||+|+|..|.|.++ .++.++|+||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            599999999999876 6999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.81  E-value=4.4e-05  Score=80.85  Aligned_cols=64  Identities=28%  Similarity=0.396  Sum_probs=41.0

Q ss_pred             ccCcCCcEEEEeeEE-EChhhHHHHHhCCccccceeeecccceee---EEEecccccceEEEEecccC
Q 010478          242 SGVKYLRSLRLFSVN-VTGEILEFILHNCPLLDQLSVVRSETLVS---LKVVGSAIQLKHLRISTCYR  305 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~-~~~~~l~~lls~CP~Le~L~L~~c~~~~~---l~i~~~~~~Lk~L~l~~c~~  305 (509)
                      ..+++|+.|+|..+. ++|..+..+...||.||.|.+.+|..++.   ..+...++.|++|++..|..
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            345777777777666 67777777777777777777777765332   13334456677777766664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=7.7e-05  Score=74.84  Aligned_cols=179  Identities=17%  Similarity=0.150  Sum_probs=111.1

Q ss_pred             CccCcCCcEEEEeeEEECh-hhHHHHHhCCccccceeeecccce--eeEEEecccccceEEEEecccC----ccEEEEEC
Q 010478          241 LSGVKYLRSLRLFSVNVTG-EILEFILHNCPLLDQLSVVRSETL--VSLKVVGSAIQLKHLRISTCYR----LNEIKIST  313 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~-~~l~~lls~CP~Le~L~L~~c~~~--~~l~i~~~~~~Lk~L~l~~c~~----l~~l~i~a  313 (509)
                      ...||+++.|+|+.--|.. ..+..++...|+||.|+|+.-...  ..-.....++.||.|.+..|.-    +..+....
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f  221 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF  221 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence            4578999999999877765 558889999999999999875321  1111222458999999999972    44566778


Q ss_pred             CceeEEEEecCCc--cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhh-hccC------CCC
Q 010478          314 PNLLSFKYFGPGQ--ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELY-AQFS------EHE  384 (509)
Q Consensus       314 P~L~~L~~~g~~~--~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~-~~~~------~~~  384 (509)
                      |+|+.|.+.+...  ...........|+++++.....  .++........+|.|+.|.++.+.--. ...+      ...
T Consensus       222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l--i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~  299 (505)
T KOG3207|consen  222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL--IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT  299 (505)
T ss_pred             CcHHHhhhhcccccceecchhhhhhHHhhccccCCcc--cccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence            9999998887731  0111222344577777765211  111111233567888888887543110 1111      467


Q ss_pred             CCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478          385 LPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD  424 (509)
Q Consensus       385 f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~  424 (509)
                      |++|++|.+..+...  ++. -..=++..++|+.|.+...
T Consensus       300 f~kL~~L~i~~N~I~--~w~-sl~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  300 FPKLEYLNISENNIR--DWR-SLNHLRTLENLKHLRITLN  336 (505)
T ss_pred             cccceeeecccCccc--ccc-ccchhhccchhhhhhcccc
Confidence            889999998554321  121 1233455677777777665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=0.00035  Score=70.25  Aligned_cols=178  Identities=17%  Similarity=0.176  Sum_probs=94.7

Q ss_pred             cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccc---ceeeEEEecccccceEEEEeccc----CccEEEEECCc
Q 010478          243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSE---TLVSLKVVGSAIQLKHLRISTCY----RLNEIKISTPN  315 (509)
Q Consensus       243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~---~~~~l~i~~~~~~Lk~L~l~~c~----~l~~l~i~aP~  315 (509)
                      .+..|+...|.+..+.+...+.....||++.+|+|+.--   .....+|...+++|+.|.++.-.    .-.......+.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            456777777777666554444556667777777777631   11233555566777777776432    12233345677


Q ss_pred             eeEEEEecCCc---cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhh-hhccC-CCCCCcccE
Q 010478          316 LLSFKYFGPGQ---ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDEL-YAQFS-EHELPNLTH  390 (509)
Q Consensus       316 L~~L~~~g~~~---~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~-~~~~~-~~~f~~Lk~  390 (509)
                      |+.|.+.+|.-   .+.......|+|+.+++..+..-.....-.   .-+..|+.|+|+...-+ ....+ ...|++|..
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~---~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST---KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh---hhhhHHhhccccCCcccccccccccccccchhh
Confidence            77777777761   122234557777777766521100000000   12345777777643332 12222 566777777


Q ss_pred             EEEEeeccCccC--HHHHHHHhhcCCCCcEEEEEE
Q 010478          391 LHLRVATLNRES--LLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       391 L~L~~~~~~~~~--~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      |++..+.-....  +.........+|+|+.|.+.-
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~  310 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE  310 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeeccc
Confidence            777444321111  111233456677777777765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.39  E-value=0.0011  Score=73.06  Aligned_cols=204  Identities=19%  Similarity=0.199  Sum_probs=108.7

Q ss_pred             CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEe----------------cccccceEEEEecccC--
Q 010478          244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVV----------------GSAIQLKHLRISTCYR--  305 (509)
Q Consensus       244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~----------------~~~~~Lk~L~l~~c~~--  305 (509)
                      .-+|++.+|.++......++-+...+  ||+|.|.++.........                .+-.+|++|+|.+-..  
T Consensus        59 ~f~ltki~l~~~~~~~~~~~~l~~~~--L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s  136 (699)
T KOG3665|consen   59 KFNLTKIDLKNVTLQHQTLEMLRKQD--LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFS  136 (699)
T ss_pred             hheeEEeeccceecchhHHHHHhhcc--ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhh
Confidence            34677777777777766665544333  999999887654322111                0113566665554221  


Q ss_pred             ---ccEEEEECCceeEEEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCC
Q 010478          306 ---LNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSE  382 (509)
Q Consensus       306 ---l~~l~i~aP~L~~L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~  382 (509)
                         ...+.-..|+|++|.+.|..                      .  ....+.++...+|||..|+++++. +......
T Consensus       137 ~~W~~kig~~LPsL~sL~i~~~~----------------------~--~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GI  191 (699)
T KOG3665|consen  137 NGWPKKIGTMLPSLRSLVISGRQ----------------------F--DNDDFSQLCASFPNLRSLDISGTN-ISNLSGI  191 (699)
T ss_pred             ccHHHHHhhhCcccceEEecCce----------------------e--cchhHHHHhhccCccceeecCCCC-ccCcHHH
Confidence               12223334555555444433                      1  112245667788888888888433 2111115


Q ss_pred             CCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCccccCCccEEEEecccCCccHHHHH
Q 010478          383 HELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELA  462 (509)
Q Consensus       383 ~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V~i~~f~g~~~e~~l~  462 (509)
                      ..+.||+.|.+..-....  ...+..++ ...+|+.|+|+.+............-+|..- |.++.+..+.|+.-.-+++
T Consensus       192 S~LknLq~L~mrnLe~e~--~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~-LpeLrfLDcSgTdi~~~~l  267 (699)
T KOG3665|consen  192 SRLKNLQVLSMRNLEFES--YQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMV-LPELRFLDCSGTDINEEIL  267 (699)
T ss_pred             hccccHHHHhccCCCCCc--hhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhccc-CccccEEecCCcchhHHHH
Confidence            567777777774332211  11233333 3678888888876321110000001133211 3344444455777777888


Q ss_pred             HHHHhcCccCCcEEEE
Q 010478          463 FYILENAMTLEKMVVN  478 (509)
Q Consensus       463 ~~lL~na~~Le~m~I~  478 (509)
                      ..+++.=+.|+.+..-
T Consensus       268 e~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  268 EELLNSHPNLQQIAAL  283 (699)
T ss_pred             HHHHHhCccHhhhhhh
Confidence            8888888888888744

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.20  E-value=0.002  Score=70.90  Aligned_cols=132  Identities=15%  Similarity=0.163  Sum_probs=79.8

Q ss_pred             ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEE
Q 010478          242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKY  321 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~  321 (509)
                      .-||+|++|.+.++.+..+++..+..++|+|..|+++++. ++.+.--+.+++|+.|.+.+-.                +
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe----------------~  207 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLE----------------F  207 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccCCC----------------C
Confidence            3589999999999999999999999999999999999974 3333222222344444332211                0


Q ss_pred             ecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhh------hhccC-CCCCCcccEEEEE
Q 010478          322 FGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDEL------YAQFS-EHELPNLTHLHLR  394 (509)
Q Consensus       322 ~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~------~~~~~-~~~f~~Lk~L~L~  394 (509)
                      ....                        .+.    .+ -.+.+|+.|+++.....      ...+. ...+|+||.|+.+
T Consensus       208 e~~~------------------------~l~----~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS  258 (699)
T KOG3665|consen  208 ESYQ------------------------DLI----DL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS  258 (699)
T ss_pred             Cchh------------------------hHH----HH-hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence            0000                        001    11 13556666666622111      11111 4457788888885


Q ss_pred             eeccCccCHHHHHHHhhcCCCCcEEEEE
Q 010478          395 VATLNRESLLGLASIMKACPFLQTLIVQ  422 (509)
Q Consensus       395 ~~~~~~~~~~~l~~lL~~~P~Le~L~i~  422 (509)
                      ++   +.+...+..+++.-|+|+...+-
T Consensus       259 gT---di~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  259 GT---DINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             Cc---chhHHHHHHHHHhCccHhhhhhh
Confidence            43   34555678888888888877643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.12  E-value=0.0023  Score=58.04  Aligned_cols=64  Identities=22%  Similarity=0.138  Sum_probs=31.6

Q ss_pred             cCCCCccEEEEeech--hhhhccCCCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478          360 SCFPQLKTLELDSCD--ELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD  424 (509)
Q Consensus       360 ~~l~~L~~L~L~~~~--~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~  424 (509)
                      ..+|+|++|.++...  ++....+...+++|+.|+|..+..... ...-..++..+|+|+.|+-.-.
T Consensus        85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEET
T ss_pred             HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEc
Confidence            357888888887321  122222266788999999965543322 2235678889999999987654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=95.93  E-value=0.0012  Score=68.76  Aligned_cols=39  Identities=21%  Similarity=0.271  Sum_probs=21.6

Q ss_pred             CCccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeec
Q 010478          240 ELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVR  279 (509)
Q Consensus       240 ~~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~  279 (509)
                      .|.++.+|.+|.|++-+++.-- ...+.+.|.||.|.|.+
T Consensus       192 ~F~~lnsL~tlkLsrNrittLp-~r~Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  192 HFDSLNSLLTLKLSRNRITTLP-QRSFKRLPKLESLDLNR  230 (873)
T ss_pred             cccccchheeeecccCcccccC-HHHhhhcchhhhhhccc
Confidence            3455666666666665554321 12344566666666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.78  E-value=0.01  Score=57.26  Aligned_cols=218  Identities=13%  Similarity=0.111  Sum_probs=113.9

Q ss_pred             cCcCCcEEEEeeEEECh-hhHHHHHhCCccccceeeecccceeeE-EEecccccceEEEEecccC----ccEEEEECCce
Q 010478          243 GVKYLRSLRLFSVNVTG-EILEFILHNCPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRISTCYR----LNEIKISTPNL  316 (509)
Q Consensus       243 ~~p~Lk~L~L~~v~~~~-~~l~~lls~CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~c~~----l~~l~i~aP~L  316 (509)
                      .+..++.|+|.+-.+++ .++..++.+.|+|+.|+|+.-.--..+ ..+.+..+|+.|.+.+..-    ++..--+-|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45778888888888887 468899999999999999765432222 2223446788888776541    22222234555


Q ss_pred             eEEEEecCCc-----cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechh--hhhccCCCCCCccc
Q 010478          317 LSFKYFGPGQ-----ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDE--LYAQFSEHELPNLT  389 (509)
Q Consensus       317 ~~L~~~g~~~-----~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~--~~~~~~~~~f~~Lk  389 (509)
                      +.|..++...     .....-.-.+.+..++...+.. .......++.+-+||+..+.+..|+-  ....-....|+.+-
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~-~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~  227 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLE-QLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS  227 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHH-HHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence            5554444320     0000000011222222221110 11112335667789999998875531  10000033444444


Q ss_pred             EEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCc--cCCccccCccccCCccEEEEecc------cCCccHHHH
Q 010478          390 HLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYK--VGRRRKVPRHSHQHLKLVELHGF------LGRPIDLEL  461 (509)
Q Consensus       390 ~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~--~~~~~~~p~c~~~~Lk~V~i~~f------~g~~~e~~l  461 (509)
                      -|+|..+.-  .++ +-..-|..+|.|..|.+.-+.--++  +++.+.+   +...|..|++.+=      .-...|..|
T Consensus       228 ~LnL~~~~i--dsw-asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~l---lIaRL~~v~vLNGskIss~er~dSEr~f  301 (418)
T KOG2982|consen  228 CLNLGANNI--DSW-ASVDALNGFPQLVDLRVSENPLSDPLRGGERRFL---LIARLTKVQVLNGSKISSRERKDSERRF  301 (418)
T ss_pred             hhhhccccc--ccH-HHHHHHcCCchhheeeccCCcccccccCCcceEE---EEeeccceEEecCcccchhhhhhhHHHH
Confidence            566633321  122 2345677889999888876521111  2222222   2344555555431      123478999


Q ss_pred             HHHHHh
Q 010478          462 AFYILE  467 (509)
Q Consensus       462 ~~~lL~  467 (509)
                      ++|.++
T Consensus       302 VRyym~  307 (418)
T KOG2982|consen  302 VRYYMS  307 (418)
T ss_pred             HHHHhh
Confidence            999886

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=95.27  E-value=0.0028  Score=66.18  Aligned_cols=13  Identities=15%  Similarity=0.020  Sum_probs=9.0

Q ss_pred             cCCCCcEEEEEEe
Q 010478          412 ACPFLQTLIVQFD  424 (509)
Q Consensus       412 ~~P~Le~L~i~~~  424 (509)
                      -|++|+.|+++..
T Consensus       315 ftqkL~~LdLs~N  327 (873)
T KOG4194|consen  315 FTQKLKELDLSSN  327 (873)
T ss_pred             hcccceeEecccc
Confidence            4677777777664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=94.50  E-value=0.016  Score=57.06  Aligned_cols=36  Identities=17%  Similarity=0.164  Sum_probs=17.0

Q ss_pred             CcCCcEEEEeeEEEChh---hHHHHHhCCccccceeeec
Q 010478          244 VKYLRSLRLFSVNVTGE---ILEFILHNCPLLDQLSVVR  279 (509)
Q Consensus       244 ~p~Lk~L~L~~v~~~~~---~l~~lls~CP~Le~L~L~~  279 (509)
                      ...+++|+|++-.|..+   .+...+.+-+.|++-++++
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd   67 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD   67 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh
Confidence            34555555555555433   2444444444444444433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=94.37  E-value=0.11  Score=58.09  Aligned_cols=130  Identities=19%  Similarity=0.136  Sum_probs=69.5

Q ss_pred             CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEEec
Q 010478          244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFG  323 (509)
Q Consensus       244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~g  323 (509)
                      .++|++|+|++..++.  +.   ...+.|+.|+|.++. +..+  .....+|+.|.+.++. +..+....|+|+.|.+++
T Consensus       241 p~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls~N~-L~~L--p~lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~  311 (788)
T PRK15387        241 PPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNP-LTHL--PALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSD  311 (788)
T ss_pred             CCCCcEEEecCCccCc--cc---CcccccceeeccCCc-hhhh--hhchhhcCEEECcCCc-cccccccccccceeECCC
Confidence            4788999998766553  11   124688888888774 2222  1112578888887765 555544557888888877


Q ss_pred             CCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEE
Q 010478          324 PGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLR  394 (509)
Q Consensus       324 ~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~  394 (509)
                      ..  ..-.-...++|..+.+..+       .+..++....+|+.|+|+.+ .+ ..+| ....+|+.|.+.
T Consensus       312 N~--L~~Lp~lp~~L~~L~Ls~N-------~L~~LP~lp~~Lq~LdLS~N-~L-s~LP-~lp~~L~~L~Ls  370 (788)
T PRK15387        312 NQ--LASLPALPSELCKLWAYNN-------QLTSLPTLPSGLQELSVSDN-QL-ASLP-TLPSELYKLWAY  370 (788)
T ss_pred             Cc--cccCCCCcccccccccccC-------ccccccccccccceEecCCC-cc-CCCC-CCCcccceehhh
Confidence            65  1110011223554444331       12223322246778887632 22 1222 123456666653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=94.18  E-value=0.058  Score=60.23  Aligned_cols=205  Identities=13%  Similarity=0.114  Sum_probs=105.9

Q ss_pred             CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEE-CCceeEEEEe
Q 010478          244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKIS-TPNLLSFKYF  322 (509)
Q Consensus       244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~-aP~L~~L~~~  322 (509)
                      +++|+.|+|++..++.  +..-+  .+.|+.|.|++|.. ..+...- ..+|+.|.+.++. +..+.-. .++|+.|.++
T Consensus       219 ~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~Ls~N~L-~~LP~~l-~s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls  291 (754)
T PRK15370        219 QGNIKTLYANSNQLTS--IPATL--PDTIQEMELSINRI-TELPERL-PSALQSLDLFHNK-ISCLPENLPEELRYLSVY  291 (754)
T ss_pred             ccCCCEEECCCCcccc--CChhh--hccccEEECcCCcc-CcCChhH-hCCCCEEECcCCc-cCccccccCCCCcEEECC
Confidence            3688888888766542  11111  24788888888753 2221111 1468888887543 5444322 3578888887


Q ss_pred             cCCccceeeecC-CCCceEEEEEeccchhhhhhhccccc-CCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCc
Q 010478          323 GPGQELKLHIEN-APQLVDISFRGVMLTRVRNVVGPITS-CFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNR  400 (509)
Q Consensus       323 g~~~~~~~~~~~-~~~L~~l~i~~~~~~~~~~~~~~l~~-~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~  400 (509)
                      ++.  ..-.... .++|+.+++..+.       +..++. ..++|+.|.+..+. + ..+|..-.++|+.|+|..+... 
T Consensus       292 ~N~--Lt~LP~~lp~sL~~L~Ls~N~-------Lt~LP~~l~~sL~~L~Ls~N~-L-t~LP~~l~~sL~~L~Ls~N~L~-  359 (754)
T PRK15370        292 DNS--IRTLPAHLPSGITHLNVQSNS-------LTALPETLPPGLKTLEAGENA-L-TSLPASLPPELQVLDVSKNQIT-  359 (754)
T ss_pred             CCc--cccCcccchhhHHHHHhcCCc-------cccCCccccccceeccccCCc-c-ccCChhhcCcccEEECCCCCCC-
Confidence            765  1100011 1234444444311       112221 22578888887432 2 2233112368888888554211 


Q ss_pred             cCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEEEec
Q 010478          401 ESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRT  480 (509)
Q Consensus       401 ~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~  480 (509)
                          .+..-+  .++|+.|+|...       .+..+|......|+.+.+.+..-. .--+-+..+....+.+..+.+...
T Consensus       360 ----~LP~~l--p~~L~~LdLs~N-------~Lt~LP~~l~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~N  425 (754)
T PRK15370        360 ----VLPETL--PPTITTLDVSRN-------ALTNLPENLPAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYN  425 (754)
T ss_pred             ----cCChhh--cCCcCEEECCCC-------cCCCCCHhHHHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCC
Confidence                111111  267888888762       333455545556777776653221 111223445566777887777654


Q ss_pred             C
Q 010478          481 N  481 (509)
Q Consensus       481 ~  481 (509)
                      .
T Consensus       426 p  426 (754)
T PRK15370        426 P  426 (754)
T ss_pred             C
Confidence            3

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=93.73  E-value=0.069  Score=59.55  Aligned_cols=74  Identities=20%  Similarity=0.149  Sum_probs=34.3

Q ss_pred             CCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc--
Q 010478          361 CFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR--  438 (509)
Q Consensus       361 ~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~--  438 (509)
                      ...+|+.|+++.+. + ..+| ...++|+.|++..+.-.     .+..+   ..+|+.|++..       +.+..+|.  
T Consensus       380 l~~~L~~LdLs~N~-L-t~LP-~l~s~L~~LdLS~N~Ls-----sIP~l---~~~L~~L~Ls~-------NqLt~LP~sl  441 (788)
T PRK15387        380 LPSGLKELIVSGNR-L-TSLP-VLPSELKELMVSGNRLT-----SLPML---PSGLLSLSVYR-------NQLTRLPESL  441 (788)
T ss_pred             cccccceEEecCCc-c-cCCC-CcccCCCEEEccCCcCC-----CCCcc---hhhhhhhhhcc-------CcccccChHH
Confidence            33467777776321 2 1222 12356777777443211     11111   12455554433       23334553  


Q ss_pred             cccCCccEEEEecc
Q 010478          439 HSHQHLKLVELHGF  452 (509)
Q Consensus       439 c~~~~Lk~V~i~~f  452 (509)
                      +.+.+|+.|.+.|-
T Consensus       442 ~~L~~L~~LdLs~N  455 (788)
T PRK15387        442 IHLSSETTVNLEGN  455 (788)
T ss_pred             hhccCCCeEECCCC
Confidence            24567777777664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=93.55  E-value=0.011  Score=53.70  Aligned_cols=35  Identities=20%  Similarity=0.222  Sum_probs=5.9

Q ss_pred             cCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccc
Q 010478          245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSE  281 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~  281 (509)
                      -.++.|+|.+..++.  ++.+-..+..|+.|+++++.
T Consensus        19 ~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~   53 (175)
T PF14580_consen   19 VKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQ   53 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS-
T ss_pred             ccccccccccccccc--ccchhhhhcCCCEEECCCCC
Confidence            345666666665543  22222234566666666653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=93.26  E-value=0.052  Score=53.06  Aligned_cols=38  Identities=29%  Similarity=0.506  Sum_probs=35.7

Q ss_pred             cccccCCCCc----HHHHHHHHcCCChhhHHHHHhhhhhhhh
Q 010478          109 IVEDLMSLLP----DDILINIISRLPLKEAAKTSVLSSRWKY  146 (509)
Q Consensus       109 ~~~D~is~LP----deiL~~ILs~Lp~~d~~rts~lSrRWr~  146 (509)
                      -..|.|+.||    |+|-..|||+|+..+...+-.|||+|++
T Consensus        70 LqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r  111 (499)
T KOG0281|consen   70 LQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR  111 (499)
T ss_pred             HHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence            3568899999    9999999999999999999999999997

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=92.71  E-value=0.09  Score=53.27  Aligned_cols=36  Identities=25%  Similarity=0.360  Sum_probs=32.9

Q ss_pred             CCCCcHHHHHHHHcCCC-hhhHHHHHhhhhhhhhhcc
Q 010478          114 MSLLPDDILINIISRLP-LKEAAKTSVLSSRWKYLWT  149 (509)
Q Consensus       114 is~LPdeiL~~ILs~Lp-~~d~~rts~lSrRWr~lw~  149 (509)
                      +++||+|+|..|..+|+ .-|.+|...|||.||..-.
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~   40 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS   40 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence            88999999999999998 4799999999999998544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.57  E-value=0.057  Score=51.62  Aligned_cols=172  Identities=17%  Similarity=0.097  Sum_probs=97.9

Q ss_pred             CCccCcCCcEEEEeeEEECh---hhHHHHHhCCccccceeeecccce--eeEEEecccccceEEEEecccCccEEEEECC
Q 010478          240 ELSGVKYLRSLRLFSVNVTG---EILEFILHNCPLLDQLSVVRSETL--VSLKVVGSAIQLKHLRISTCYRLNEIKISTP  314 (509)
Q Consensus       240 ~~~~~p~Lk~L~L~~v~~~~---~~l~~lls~CP~Le~L~L~~c~~~--~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP  314 (509)
                      ....||+|.+.+|+.-.|..   +.+..++|+...|++|.+.+|-.-  ..-+|.   ..|.+|-.      ..-.-+.|
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig---kal~~la~------nKKaa~kp  157 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG---KALFHLAY------NKKAADKP  157 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH---HHHHHHHH------HhhhccCC
Confidence            34678999999998777654   458889999999999999998421  111222   11222211      11123678


Q ss_pred             ceeEEEEecCC------ccceeeecCCCCceEEEEEecc-ch-hhhh-hhcccccCCCCccEEEEeechhh---hhccC-
Q 010478          315 NLLSFKYFGPG------QELKLHIENAPQLVDISFRGVM-LT-RVRN-VVGPITSCFPQLKTLELDSCDEL---YAQFS-  381 (509)
Q Consensus       315 ~L~~L~~~g~~------~~~~~~~~~~~~L~~l~i~~~~-~~-~~~~-~~~~l~~~l~~L~~L~L~~~~~~---~~~~~-  381 (509)
                      .|+++.+....      ......+..-..|+++.|..+. .. .... .+-+ +..+.+|+.|+|....--   ...+. 
T Consensus       158 ~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~g-l~y~~~LevLDlqDNtft~~gS~~La~  236 (388)
T COG5238         158 KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLG-LFYSHSLEVLDLQDNTFTLEGSRYLAD  236 (388)
T ss_pred             CceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHH-HHHhCcceeeeccccchhhhhHHHHHH
Confidence            88888765432      0011122333567888877621 11 1111 1111 134678999999842211   12222 


Q ss_pred             -CCCCCcccEEEEEeeccCccCHHHHHHHhhc-----CCCCcEEEEEEe
Q 010478          382 -EHELPNLTHLHLRVATLNRESLLGLASIMKA-----CPFLQTLIVQFD  424 (509)
Q Consensus       382 -~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~-----~P~Le~L~i~~~  424 (509)
                       .+.+++|+.|.+..+.....+   ...+++.     .|+|..|-.+..
T Consensus       237 al~~W~~lrEL~lnDClls~~G---~~~v~~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         237 ALCEWNLLRELRLNDCLLSNEG---VKSVLRRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             Hhcccchhhhccccchhhcccc---HHHHHHHhhhhcCCCccccccchh
Confidence             678888999999665544433   3444443     588887776653

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=91.13  E-value=0.15  Score=49.63  Aligned_cols=35  Identities=26%  Similarity=0.433  Sum_probs=30.7

Q ss_pred             ccCCCCcHHHHHHHHc-----CCChhhHHHHHhhhhhhhh
Q 010478          112 DLMSLLPDDILINIIS-----RLPLKEAAKTSVLSSRWKY  146 (509)
Q Consensus       112 D~is~LPdeiL~~ILs-----~Lp~~d~~rts~lSrRWr~  146 (509)
                      +.|+.||||||..||.     .|+.++..++|.|||.|+-
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            4578999999999986     5667999999999999985

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=91.06  E-value=0.14  Score=57.33  Aligned_cols=190  Identities=13%  Similarity=0.126  Sum_probs=101.3

Q ss_pred             cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEE-CCceeEEEEec
Q 010478          245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKIS-TPNLLSFKYFG  323 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~-aP~L~~L~~~g  323 (509)
                      ++|+.|+|++..+..  +..-+  ...|+.|+++++ .++.+.-.- ..+|+.|.+.++. +..+... .++|+.|.+.+
T Consensus       241 ~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~Ls~N-~L~~LP~~l-~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~  313 (754)
T PRK15370        241 DTIQEMELSINRITE--LPERL--PSALQSLDLFHN-KISCLPENL-PEELRYLSVYDNS-IRTLPAHLPSGITHLNVQS  313 (754)
T ss_pred             ccccEEECcCCccCc--CChhH--hCCCCEEECcCC-ccCcccccc-CCCCcEEECCCCc-cccCcccchhhHHHHHhcC
Confidence            579999999887653  11111  247999999865 344321111 2589999999875 5544322 24678887776


Q ss_pred             CCccceeeecCCCCceEEEEEeccchhhhhhhcccccC-CCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCccC
Q 010478          324 PGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSC-FPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRES  402 (509)
Q Consensus       324 ~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~-l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~~  402 (509)
                      +.- ..+...-.++|+.+.+..+.       +..++.. .++|+.|+++.+. + ..+|..-.++|++|+|..+....  
T Consensus       314 N~L-t~LP~~l~~sL~~L~Ls~N~-------Lt~LP~~l~~sL~~L~Ls~N~-L-~~LP~~lp~~L~~LdLs~N~Lt~--  381 (754)
T PRK15370        314 NSL-TALPETLPPGLKTLEAGENA-------LTSLPASLPPELQVLDVSKNQ-I-TVLPETLPPTITTLDVSRNALTN--  381 (754)
T ss_pred             Ccc-ccCCccccccceeccccCCc-------cccCChhhcCcccEEECCCCC-C-CcCChhhcCCcCEEECCCCcCCC--
Confidence            651 01111123567777776522       1222222 2589999998543 2 22331123689999995543221  


Q ss_pred             HHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC----cc--ccCCccEEEEecccCCccHHHHHHHH
Q 010478          403 LLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP----RH--SHQHLKLVELHGFLGRPIDLELAFYI  465 (509)
Q Consensus       403 ~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p----~c--~~~~Lk~V~i~~f~g~~~e~~l~~~l  465 (509)
                         +..-+.  +.|+.|++...       .+..+|    .+  ...++..+.+.+-.-....+.-++.+
T Consensus       382 ---LP~~l~--~sL~~LdLs~N-------~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~~L  438 (754)
T PRK15370        382 ---LPENLP--AALQIMQASRN-------NLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQRL  438 (754)
T ss_pred             ---CCHhHH--HHHHHHhhccC-------CcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHHHHh
Confidence               111111  24666666552       222233    22  23567788777643333444444333

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.78  E-value=0.021  Score=54.61  Aligned_cols=40  Identities=20%  Similarity=0.177  Sum_probs=27.1

Q ss_pred             CCCCCcccEEEEEeeccC-ccCHHHHHHHhhcCCCCcEEEE
Q 010478          382 EHELPNLTHLHLRVATLN-RESLLGLASIMKACPFLQTLIV  421 (509)
Q Consensus       382 ~~~f~~Lk~L~L~~~~~~-~~~~~~l~~lL~~~P~Le~L~i  421 (509)
                      +..+++|+.|.|..+.|. ..+-..=..+|+..|+|++|+=
T Consensus        84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence            456777788888666653 3333345678888888888864

>PRK15386 type III secretion protein GogB; Provisional

Probab=89.42  E-value=0.64  Score=47.87  Aligned_cols=135  Identities=14%  Similarity=0.202  Sum_probs=69.7

Q ss_pred             HhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEE-ECCceeEEEEecCCccceeeecCCCCceEEEEE
Q 010478          266 LHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKI-STPNLLSFKYFGPGQELKLHIENAPQLVDISFR  344 (509)
Q Consensus       266 ls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i-~aP~L~~L~~~g~~~~~~~~~~~~~~L~~l~i~  344 (509)
                      +..|+.|+.|.+++| .++.+.  .-.++|++|.+.+|..+..+.- -.++|++|.+.++.. ..   .-.+.|+.+.+.
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~-L~---sLP~sLe~L~L~  120 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPE-IS---GLPESVRSLEIK  120 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccc-cc---ccccccceEEeC
Confidence            445788888888888 344332  1114688888888877654431 235788888777631 11   112346666664


Q ss_pred             eccchhhhhhhcccccCCCCccEEEEeechhh-hhccCCCCC-CcccEEEEEeeccCccCHHHHHHHhhcC-CCCcEEEE
Q 010478          345 GVMLTRVRNVVGPITSCFPQLKTLELDSCDEL-YAQFSEHEL-PNLTHLHLRVATLNRESLLGLASIMKAC-PFLQTLIV  421 (509)
Q Consensus       345 ~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~-~~~~~~~~f-~~Lk~L~L~~~~~~~~~~~~l~~lL~~~-P~Le~L~i  421 (509)
                      .....    .+..++   ++|+.|.+...... ....+ ..+ ++|++|.+..+  ....      +.... ++|+.|.+
T Consensus       121 ~n~~~----~L~~LP---ssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c--~~i~------LP~~LP~SLk~L~l  184 (426)
T PRK15386        121 GSATD----SIKNVP---NGLTSLSINSYNPENQARID-NLISPSLKTLSLTGC--SNII------LPEKLPESLQSITL  184 (426)
T ss_pred             CCCCc----ccccCc---chHhheeccccccccccccc-cccCCcccEEEecCC--Cccc------CcccccccCcEEEe
Confidence            32111    122233   35777776421111 11111 122 58999999542  2111      11112 47888888


Q ss_pred             EE
Q 010478          422 QF  423 (509)
Q Consensus       422 ~~  423 (509)
                      ..
T Consensus       185 s~  186 (426)
T PRK15386        185 HI  186 (426)
T ss_pred             cc
Confidence            64

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=89.08  E-value=0.18  Score=34.38  Aligned_cols=35  Identities=31%  Similarity=0.356  Sum_probs=26.7

Q ss_pred             cCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccc
Q 010478          245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSE  281 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~  281 (509)
                      ++|+.|+|.+..+++  +...+++||+|+.|+++++.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            578999999888874  55557889999999999884

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.62  E-value=0.22  Score=48.30  Aligned_cols=86  Identities=22%  Similarity=0.323  Sum_probs=58.8

Q ss_pred             CCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC-C-CCCCcccEEEEEeeccCccCHHHHHHHhh
Q 010478          334 NAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS-E-HELPNLTHLHLRVATLNRESLLGLASIMK  411 (509)
Q Consensus       334 ~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~-~-~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~  411 (509)
                      .+..++++++..+.-+.. ..+..++..+|.++.|.|+ |..+...+. . ....||+.|.|.++.   .++.-+..++.
T Consensus        69 ~~~~v~elDL~~N~iSdW-seI~~ile~lP~l~~LNls-~N~L~s~I~~lp~p~~nl~~lVLNgT~---L~w~~~~s~l~  143 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDW-SEIGAILEQLPALTTLNLS-CNSLSSDIKSLPLPLKNLRVLVLNGTG---LSWTQSTSSLD  143 (418)
T ss_pred             HhhhhhhhhcccchhccH-HHHHHHHhcCccceEeecc-CCcCCCccccCcccccceEEEEEcCCC---CChhhhhhhhh
Confidence            356677777766322211 2234677899999999998 666644333 3 367899999995543   45556788999


Q ss_pred             cCCCCcEEEEEEe
Q 010478          412 ACPFLQTLIVQFD  424 (509)
Q Consensus       412 ~~P~Le~L~i~~~  424 (509)
                      ..|.++.|+++..
T Consensus       144 ~lP~vtelHmS~N  156 (418)
T KOG2982|consen  144 DLPKVTELHMSDN  156 (418)
T ss_pred             cchhhhhhhhccc
Confidence            9999999987664

>PRK15386 type III secretion protein GogB; Provisional

Probab=88.18  E-value=0.54  Score=48.41  Aligned_cols=68  Identities=18%  Similarity=0.139  Sum_probs=33.1

Q ss_pred             CCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEEe
Q 010478          246 YLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYF  322 (509)
Q Consensus       246 ~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~  322 (509)
                      +|+.|.++++.-- ..+...+  .+.|+.|.+.+|..+..  ++   ++|+.|.+.. .....+.---++|+.|.+.
T Consensus        73 sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~s--LP---~sLe~L~L~~-n~~~~L~~LPssLk~L~I~  140 (426)
T PRK15386         73 ELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEISG--LP---ESVRSLEIKG-SATDSIKNVPNGLTSLSIN  140 (426)
T ss_pred             CCcEEEccCCCCc-ccCCchh--hhhhhheEccCcccccc--cc---cccceEEeCC-CCCcccccCcchHhheecc
Confidence            5777777664210 0011111  34677777777755432  22   4566666642 2222333223456666554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.30  E-value=0.066  Score=49.01  Aligned_cols=43  Identities=19%  Similarity=0.226  Sum_probs=24.7

Q ss_pred             ccCcCCcEEEEeeEE-EChhhHHHHHhCCccccceeeeccccee
Q 010478          242 SGVKYLRSLRLFSVN-VTGEILEFILHNCPLLDQLSVVRSETLV  284 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~-~~~~~l~~lls~CP~Le~L~L~~c~~~~  284 (509)
                      .+++.++.|.+.+|. |.|..|+.+-.-.|+||.|+|++|..++
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT  165 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT  165 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence            355566666666554 4455555555556666666666665544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=86.89  E-value=0.53  Score=34.26  Aligned_cols=34  Identities=38%  Similarity=0.479  Sum_probs=16.8

Q ss_pred             ccCCCCccEEEEeechhhhhccC--CCCCCcccEEEE
Q 010478          359 TSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHL  393 (509)
Q Consensus       359 ~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L  393 (509)
                      +.++++|++|.++ ...+...-+  +..+++|++|++
T Consensus        21 f~~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l   56 (61)
T PF13855_consen   21 FSNLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDL   56 (61)
T ss_dssp             TTTGTTESEEEET-SSSESEEETTTTTTSTTESEEEE
T ss_pred             HcCCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeC
Confidence            3455666666665 222211111  455566666665

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=86.73  E-value=0.16  Score=37.11  Aligned_cols=35  Identities=26%  Similarity=0.217  Sum_probs=14.9

Q ss_pred             cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecc
Q 010478          245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRS  280 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c  280 (509)
                      |+|++|+|.+..++.- -...+.+++.|+.|+++++
T Consensus         1 p~L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N   35 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNN   35 (61)
T ss_dssp             TTESEEEETSSTESEE-CTTTTTTGTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCcc-CHHHHcCCCCCCEeEccCC
Confidence            3455555554433210 0012344555555555543

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=85.75  E-value=0.26  Score=29.24  Aligned_cols=17  Identities=24%  Similarity=0.581  Sum_probs=13.6

Q ss_pred             Cccccceeeecccceee
Q 010478          269 CPLLDQLSVVRSETLVS  285 (509)
Q Consensus       269 CP~Le~L~L~~c~~~~~  285 (509)
                      ||.|++|+|.+|..+++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            78888888888887654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.60  E-value=0.083  Score=48.37  Aligned_cols=60  Identities=22%  Similarity=0.309  Sum_probs=40.3

Q ss_pred             CcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE---EEecccccceEEEEecccCcc
Q 010478          247 LRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL---KVVGSAIQLKHLRISTCYRLN  307 (509)
Q Consensus       247 Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l---~i~~~~~~Lk~L~l~~c~~l~  307 (509)
                      ++.++-++..|..+.++. +.+++.++.|.+.+|..++++   .+....++|+.|+|++|+.++
T Consensus       103 IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT  165 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT  165 (221)
T ss_pred             EEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence            344555555666666666 557999999999999877644   233344677777777777433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=84.94  E-value=0.063  Score=56.88  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=11.0

Q ss_pred             CCccccCccc--cCCccEEEEec
Q 010478          431 GRRRKVPRHS--HQHLKLVELHG  451 (509)
Q Consensus       431 ~~~~~~p~c~--~~~Lk~V~i~~  451 (509)
                      +++..+|+|+  +.+|+.+.+.|
T Consensus       232 N~Lp~vPecly~l~~LrrLNLS~  254 (1255)
T KOG0444|consen  232 NNLPIVPECLYKLRNLRRLNLSG  254 (1255)
T ss_pred             cCCCcchHHHhhhhhhheeccCc
Confidence            4455566664  34555555544

>PF13013 F-box-like_2: F-box-like domain

Probab=82.42  E-value=1.4  Score=36.49  Aligned_cols=29  Identities=17%  Similarity=-0.039  Sum_probs=26.3

Q ss_pred             CCCCcHHHHHHHHcCCChhhHHHHHhhhh
Q 010478          114 MSLLPDDILINIISRLPLKEAAKTSVLSS  142 (509)
Q Consensus       114 is~LPdeiL~~ILs~Lp~~d~~rts~lSr  142 (509)
                      +.+||+||+..|+.+-...+....+..++
T Consensus        22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   22 LLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            77999999999999999999988887776

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=81.41  E-value=0.86  Score=50.81  Aligned_cols=60  Identities=27%  Similarity=0.358  Sum_probs=31.3

Q ss_pred             cCCCCccEEEEeechhhhh-ccC-CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478          360 SCFPQLKTLELDSCDELYA-QFS-EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD  424 (509)
Q Consensus       360 ~~l~~L~~L~L~~~~~~~~-~~~-~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~  424 (509)
                      ..+++|+.++++ |.++.. .++ .-..++||+|++.++.....+    ..-|+.+.++..++++..
T Consensus       449 ~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d----~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  449 AQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRLVFD----HKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCcccccc----hhhhHHhhhhhheecccC
Confidence            356677777776 555522 223 222378888888555322111    233444555555555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=80.02  E-value=0.043  Score=58.09  Aligned_cols=37  Identities=22%  Similarity=0.202  Sum_probs=20.1

Q ss_pred             CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          382 EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       382 ~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      ...|..|+.|.|.-+.     ...+..-+.-.|.|+.|+++-
T Consensus       335 lcRC~kL~kL~L~~Nr-----LiTLPeaIHlL~~l~vLDlre  371 (1255)
T KOG0444|consen  335 LCRCVKLQKLKLDHNR-----LITLPEAIHLLPDLKVLDLRE  371 (1255)
T ss_pred             hhhhHHHHHhcccccc-----eeechhhhhhcCCcceeeccC
Confidence            5667777777773221     112334444456677776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	509
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-07
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.7 bits (167), Expect = 3e-12
 Identities = 98/564 (17%), Positives = 161/564 (28%), Gaps = 155/564 (27%)

Query: 12  ALDCSYMQLLSQSH-HCRSPSTATVTSETQ--------PILSQHKLLRLVITVLHSIFTV 62
            L  +Y  L+S      R PS  T     Q         + +++ + RL          +
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL-----QPYLKL 140

Query: 63  NYCIKSLSPATTAPHPYRW----------K----ANPPQSFAEMRKRPRN----TPATRE 104
              +  L PA       +           K     +   S+    K              
Sbjct: 141 RQALLELRPA-------KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 105 VKGEIVEDLMSLL---------PDDILINIISRLPLKEAAKTSVLSSRWKY--------- 146
               ++E L  LL           D   NI  R+   +A    +L S+  Y         
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLLVLLN 252

Query: 147 LWTFTTVLDFDG-----ITESSNCISD---------PTCIDKVLQLHRGSSINKFRLCLY 192
           +        F+      +T     ++D          +     + L      +     L 
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 193 SK--DL-HESEITN-WVYSALSKRVQIFELELWPRLKNY------TFLENCYNNLKS-EL 241
            +  DL  E   TN    S +++ ++   L  W   K+       T +E+  N L+  E 
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDG-LATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 242 SGVKYLRSLRLF--SVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLR 299
              K    L +F  S ++   +L  I  +    D + VV    L       S ++ K  +
Sbjct: 372 R--KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV--NKLHKY----SLVE-KQPK 422

Query: 300 ISTCYRLNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPIT 359
            ST   +  I           Y     ELK+ +EN   L        ++         I 
Sbjct: 423 EST-ISIPSI-----------YL----ELKVKLENEYAL-----HRSIVDHYN-----IP 456

Query: 360 SCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTL 419
             F     L     D+ +     H L N+ H      TL R   L          FL+  
Sbjct: 457 KTFDS-DDLIPPYLDQYFYSHIGHHLKNIEHPER--MTLFRMVFLDFR-------FLE-- 504

Query: 420 IVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGFLGRPIDLEL-AFYILENAMTLEKMVVN 478
                         +K+ RH             L     L+    YI +N    E++V  
Sbjct: 505 --------------QKI-RHDS--TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547

Query: 479 RTNYSFGCG----NAKDCTKLREA 498
             ++          +K    LR A
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIA 571

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 56/364 (15%), Positives = 110/364 (30%), Gaps = 99/364 (27%)

Query: 107 GEIVEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSNCI 166
            +I+        D+     +  +P       S+LS             + D I  S + +
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMP------KSILSKE-----------EIDHIIMSKDAV 61

Query: 167 SDPTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELE------- 219
           S    +   L   +   + KF      +++       ++ S +    +   +        
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKF-----VEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 220 ---LW-----------PRLKNYTFLENCYNNLKSE----LSGVK----------YLRSLR 251
              L+            RL+ Y  L      L+      + GV              S +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 252 LFSVNVTGEI--LEFILHNCP--LLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLN 307
           +       +I  L     N P  +L+ L     + L   ++  +         +   R++
Sbjct: 176 VQCKM-DFKIFWLNLKNCNSPETVLEML-----QKL-LYQIDPNWTSRSDHSSNIKLRIH 228

Query: 308 EIKISTPNLLSFKYFGPGQELKL-HIENAPQLV---DISFRGVMLTR---VRNVVGPITS 360
            I+     LL  K +     L L +++N  +     ++S + ++ TR   V + +   T+
Sbjct: 229 SIQAELRRLLKSKPY-ENCLLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 361 CFPQL----KTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFL 416
               L     TL  D    L  ++          L  R   L RE L          P  
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKY----------LDCRPQDLPREVLTTN-------PRR 329

Query: 417 QTLI 420
            ++I
Sbjct: 330 LSII 333

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 66.5 bits (162), Expect = 8e-12
 Identities = 57/335 (17%), Positives = 104/335 (31%), Gaps = 36/335 (10%)

Query: 109 IVEDLMSLLPDDILINIISRLPLKEAAKTSVL-SSRWKYLWTFTTVLDFDGITESSNCIS 167
           + + +    P+++L ++ S + L +   +  L    W          + +        I 
Sbjct: 1   MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSW---------YEIERWCRRKVFIG 51

Query: 168 DPTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNY 227
           +   +     + R   +    L        +  +    +              +  L+  
Sbjct: 52  NCYAVSPATVIRRFPKVRSVELK-GKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEI 110

Query: 228 TFLENCY---NNLKSELSGVKYLRSLRLFSV-NVTGEILEFILHNCPLLDQLSV----VR 279
             L+      + L+      K  + L L S    + + L  I   C  L +L +    V 
Sbjct: 111 R-LKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD 169

Query: 280 SETLVSLKVVG-SAIQLKHLRISTCYR------LNEIKISTPNL--LSFKYFGPGQELKL 330
             +   L     +   L  L IS          L  +    PNL  L      P ++L  
Sbjct: 170 DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT 229

Query: 331 HIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLE-LDSCDELYAQFSEH---ELP 386
            ++ APQL ++   G       +V   ++      K L  L    +    +         
Sbjct: 230 LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289

Query: 387 NLTHLHLRVATLNRESLLGLASIMKACPFLQTLIV 421
            LT L+L  AT+    L+ L      CP LQ L V
Sbjct: 290 RLTTLNLSYATVQSYDLVKLLC---QCPKLQRLWV 321

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 49/288 (17%), Positives = 87/288 (30%), Gaps = 51/288 (17%)

Query: 163 SNCISDPTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWP 222
           +  +           L R   + +     Y+ ++        VYS LS            
Sbjct: 219 NRAVPLEKLAT---LLQRAPQLEELGTGGYTAEVRPD-----VYSGLS--------VALS 262

Query: 223 RLKNYTFLENCYNNLKSELSGV----KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVV 278
             K    L   ++ + + L  V      L +L L    V    L  +L  CP L +L V+
Sbjct: 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL 322

Query: 279 RSETLVSLKVVGSA-IQLKHLRISTCYRLNEIKISTPNLLSFKYFGPG-QELKLHIENAP 336
                  L+V+ S    L+ LR+                        G  +L+  +    
Sbjct: 323 DYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR 382

Query: 337 QLVDISFRGVM-----LTRVRNV------------------VGPITSCFPQLKTLELDSC 373
           Q+ + +   +      +TR R                     G I      L+ L L   
Sbjct: 383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL 442

Query: 374 --DELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTL 419
             D+++     +    +  L +  A     S LG+  ++  C  L+ L
Sbjct: 443 LTDKVFEYIGTY-AKKMEMLSVAFAGD---SDLGMHHVLSGCDSLRKL 486

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 56/319 (17%), Positives = 104/319 (32%), Gaps = 45/319 (14%)

Query: 115 SLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFDGITESSNCISDPTCIDK 174
             LPD++L+ I S L L E  K S +  RW         L  D     +  ++       
Sbjct: 10  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYR-------LASDESLWQTLDLTGKNLHPD 62

Query: 175 VLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFLENCY 234
           V        +  FR              +   +      ++  ++L   +   + L    
Sbjct: 63  VTGRLLSQGVIAFRCPRS--------FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 114

Query: 235 NNLKSELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLD-QLSVVRSETLVSLKVVGSAI 293
           +           L++L L  + ++  I+  +  N  L+   LS     +  +L+ + S+ 
Sbjct: 115 SQCSK-------LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167

Query: 294 -QLKHLRISTCYRLNE------IKISTPNLLSFKYFGPGQE-----LKLHIENAPQLVDI 341
            +L  L +S C+   E      +   +  +      G  +      L   +   P LV +
Sbjct: 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227

Query: 342 SFRG-VMLTRVRNVVGPITSCFPQLKTLELDSCDEL--YAQFSEHELPNLTHLHLRVATL 398
                VML    +           L+ L L  C ++         E+P L  L +     
Sbjct: 228 DLSDSVMLK--NDCFQEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVP 284

Query: 399 NRESLLGLASIMKACPFLQ 417
           +      L  + +A P LQ
Sbjct: 285 DG----TLQLLKEALPHLQ 299

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 45/350 (12%), Positives = 102/350 (29%), Gaps = 65/350 (18%)

Query: 117 LPDDILINIISRLPLKEAAKTSVL-SSRWKYLWTFTTVLDFDGITESSNCISDPTCIDKV 175
             DD++  +++ +   +   ++ L   RW            D  T     ++        
Sbjct: 16  TVDDVIEQVMTYITDPKDRDSASLVCRRW---------FKIDSETREHVTMALCYTATPD 66

Query: 176 LQLHRGSSINKFRL--CLYSKDLH------ESEITNWVYSALSKRVQIFELEL------- 220
               R  ++   +L     +   +         +T WV    +   Q+  +         
Sbjct: 67  RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSD 126

Query: 221 ----------WPRLKNYTFLENCYN----NLKSELSGVKYLRSLRLFS---VNVTGEILE 263
                        L+    L+ C       L S ++  + +++L +         G+ L 
Sbjct: 127 LDLDRLAKARADDLETLK-LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLH 185

Query: 264 FILHNCPLLDQLSVVRSE----TLVSLKVVGSA-IQLKHLRISTCYRLNEIKISTP---- 314
            +  +   L+ L+   +E    +   L+ +      L  +++     L  +         
Sbjct: 186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANL 245

Query: 315 ---NLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELD 371
                 S        E  +++    +L  +    +      N +  +     Q++ L+L 
Sbjct: 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG----PNEMPILFPFAAQIRKLDLL 301

Query: 372 SCDELYAQFSEH--ELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTL 419
                         + PNL  L  R    N     GL  + + C  L+ L
Sbjct: 302 YALLETEDHCTLIQKCPNLEVLETR----NVIGDRGLEVLAQYCKQLKRL 347

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 44/280 (15%), Positives = 80/280 (28%), Gaps = 37/280 (13%)

Query: 174 KVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFLENC 233
             +++     +        + +L E      +   +    +   L    +L         
Sbjct: 223 VSVKVGDFEILELVGFFKAAANLEEFC-GGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG 281

Query: 234 YNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGS-A 292
            N +         +R L L    +  E    ++  CP L+ L          L+V+    
Sbjct: 282 PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341

Query: 293 IQLKHLRISTCYRLNEIKISTPNL--LSFKYFGPG----QELKLH---IENAPQLVDISF 343
            QLK LRI        ++     +          G    + + ++   I N   L  I  
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES-LESIGT 400

Query: 344 RGVMLTRVRNV----------------VGPITSCFPQLKTLELDSC-----DELYAQFSE 382
               L   R V                V  +     +L+            D   +   +
Sbjct: 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460

Query: 383 HELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQ 422
           +  PN+  + L       ES  GL    + CP LQ L ++
Sbjct: 461 Y-SPNVRWMLLG---YVGESDEGLMEFSRGCPNLQKLEMR 496

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 33/194 (17%), Positives = 60/194 (30%), Gaps = 25/194 (12%)

Query: 247 LRSLRLFSV---NVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTC 303
           L  L  +      ++ + LE I  NC  L  + V   E L  +    +A  L+     + 
Sbjct: 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSL 253

Query: 304 YR--------LNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVV 355
                     +N +       L   Y GP  E+ +    A Q+  +              
Sbjct: 254 NEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYA--LLETEDH 310

Query: 356 GPITSCFPQLKTLELDSC--DELYAQFSEHELPNLTHLHLR--------VATLNRESLLG 405
             +    P L+ LE  +   D      +++    L  L +                S  G
Sbjct: 311 CTLIQKCPNLEVLETRNVIGDRGLEVLAQY-CKQLKRLRIERGADEQGMEDEEGLVSQRG 369

Query: 406 LASIMKACPFLQTL 419
           L ++ + C  L+ +
Sbjct: 370 LIALAQGCQELEYM 383

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 41.5 bits (96), Expect = 4e-04
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 8/135 (5%)

Query: 71  PATTAPHPYRWKANPPQSFAEMRKRPRNTPATREVKGEIVEDLMSLLPDDILINIISRLP 130
           P   +P     +  P ++ AE            E +     + ++ LP+ +L+ +++ LP
Sbjct: 13  PEEASP-----EEQPEEAGAEASAEEEQLREAEEEEEAEAVEYLAELPEPLLLRVLAELP 67

Query: 131 LKEAAKTSVL-SSRWKYLWTFTTVLDFDGITESSNCISDPTCIDKVLQLHRGSSINKFRL 189
             E  +   L   RWK L     +       +    + + +  ++     +   ++K R 
Sbjct: 68  ATELVQACRLVCLRWKELVDGAPLWLL--KCQQEGLVPEGSADEERDHWQQFYFLSKRRR 125

Query: 190 CLYSKDLHESEITNW 204
            L      E ++  W
Sbjct: 126 NLLRNPCGEEDLEGW 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	509
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.76
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.7
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.71
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.69
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.69
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.59
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.41
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.3
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.18
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.14
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.03
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.0
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.99
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.97
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.95
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.93
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.9
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.9
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.88
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.82
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.8
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.79
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.79
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.77
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.77
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.76
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.75
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.74
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.73
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.71
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.7
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.68
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.67
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.67
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.66
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.63
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.63
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.61
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.6
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.58
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.57
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.56
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.55
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.54
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.52
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.5
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.48
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.47
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.46
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.44
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.41
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.41
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.41
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.39
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.37
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.35
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.25
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.11
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.03
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.02
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.99
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	96.96
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	96.94
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	96.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	96.88
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	96.87
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	96.77
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.77
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.62
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	96.58
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	96.57
3m19_A	251	Variable lymphocyte receptor A diversity region; a	96.55
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	96.52
3m19_A	251	Variable lymphocyte receptor A diversity region; a	96.27
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	96.16
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	95.96
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	95.94
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	95.86
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	95.72
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	95.62
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	95.57
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	95.21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	95.2
3e6j_A	229	Variable lymphocyte receptor diversity region; var	95.16
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	95.05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	94.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	94.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	94.54
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	94.41
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	94.38
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	94.24
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	93.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	93.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	93.43
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	93.09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	92.87
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	92.85
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	92.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	92.34
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	91.8
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	91.44
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	90.98
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	90.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	89.95
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	87.05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	86.86
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	86.22
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	86.2
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	85.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	83.96
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	83.53
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	83.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	81.37

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.78  E-value=5.7e-19  Score=190.48  Aligned_cols=194  Identities=18%  Similarity=0.216  Sum_probs=115.4

Q ss_pred             cccCCCCcHHHHHHHHcCCC-hhhHHHHHhhhhhhhhhcc-cCceeEEeCCCCCCCCCChHHHHHHHhccccCCccceEE
Q 010478          111 EDLMSLLPDDILINIISRLP-LKEAAKTSVLSSRWKYLWT-FTTVLDFDGITESSNCISDPTCIDKVLQLHRGSSINKFR  188 (509)
Q Consensus       111 ~D~is~LPdeiL~~ILs~Lp-~~d~~rts~lSrRWr~lw~-~~p~L~f~~~~~~~~~~~~~~~v~~~L~~~~~~~l~~l~  188 (509)
                      .|+|+.||||||.+||+||+ .+|+++++.|||||+++.. ....+++.....    ...    ..++...  +.++++.
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~----~~~----~~~~~~~--~~L~~L~   72 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYA----VSP----ATVIRRF--PKVRSVE   72 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTS----SCH----HHHHHHC--TTCCEEE
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccc----cCH----HHHHhhC--CCceEEe
Confidence            48899999999999999999 9999999999999998722 122344433211    111    1222222  3488888


Q ss_pred             EEeecC--------CCChhhHHHHHHHHhc--cCcEEEEEEecCCCcceeeecccccccccCCccCcCCcEEEEeeE-EE
Q 010478          189 LCLYSK--------DLHESEITNWVYSALS--KRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSV-NV  257 (509)
Q Consensus       189 l~~~~~--------~~~~~~~~~wl~~a~~--~~v~~L~L~~~~~~~~~~~p~~~~~~L~~~~~~~p~Lk~L~L~~v-~~  257 (509)
                      +.....        ..+...+..|+.....  .++++|+|....      +...   .+......+++|++|+|.++ .+
T Consensus        73 L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~------~~~~---~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           73 LKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV------VTDD---CLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             EECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB------CCHH---HHHHHHHHCTTCCEEEEESCEEE
T ss_pred             ccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE------EcHH---HHHHHHHhCCCCcEEeCCCcCCC
Confidence            876421        1122445678877654  489999997432      1000   00001125789999999988 67


Q ss_pred             ChhhHHHHHhCCccccceeeecccceeeE------EEecccccceEEEEeccc-C-----ccEEEEECCceeEEEEecC
Q 010478          258 TGEILEFILHNCPLLDQLSVVRSETLVSL------KVVGSAIQLKHLRISTCY-R-----LNEIKISTPNLLSFKYFGP  324 (509)
Q Consensus       258 ~~~~l~~lls~CP~Le~L~L~~c~~~~~l------~i~~~~~~Lk~L~l~~c~-~-----l~~l~i~aP~L~~L~~~g~  324 (509)
                      ++..+..++.+||+|++|+|.+|. ++..      .+...+++|+.|++.+|. .     +..+...+|+|++|.+.++
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            777888888899999999999886 2211      122234677777777664 1     1111123466666666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.76  E-value=2.1e-18  Score=186.14  Aligned_cols=37  Identities=16%  Similarity=0.293  Sum_probs=33.5

Q ss_pred             CCCCcHHHHHHHHcCC-ChhhHHHHHhhhhhhhhhccc
Q 010478          114 MSLLPDDILINIISRL-PLKEAAKTSVLSSRWKYLWTF  150 (509)
Q Consensus       114 is~LPdeiL~~ILs~L-p~~d~~rts~lSrRWr~lw~~  150 (509)
                      .++||||+|.+||+|| +.+|++++++|||||++++..
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~   50 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSE   50 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhc
Confidence            3489999999999999 899999999999999998543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.70  E-value=1.7e-18  Score=173.38  Aligned_cols=163  Identities=23%  Similarity=0.198  Sum_probs=101.3

Q ss_pred             ccCCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhhhccc---CceeEEeCCCCCCCCCChHHHHHHHhccccCCccceEE
Q 010478          112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTF---TTVLDFDGITESSNCISDPTCIDKVLQLHRGSSINKFR  188 (509)
Q Consensus       112 D~is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~lw~~---~p~L~f~~~~~~~~~~~~~~~v~~~L~~~~~~~l~~l~  188 (509)
                      ..|++|||||+.+||++|+.+|+++++.|||+|+++...   ...+++....+                           
T Consensus         7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~---------------------------   59 (336)
T 2ast_B            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL---------------------------   59 (336)
T ss_dssp             CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC---------------------------
T ss_pred             CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccC---------------------------
Confidence            458999999999999999999999999999999997421   11233332211                           


Q ss_pred             EEeecCCCChhhHHHHHHHHhccCcEEEEEEecCCCcceeeecccccccccCCccCcCCcEEEEeeEEEChhhHHHHHhC
Q 010478          189 LCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHN  268 (509)
Q Consensus       189 l~~~~~~~~~~~~~~wl~~a~~~~v~~L~L~~~~~~~~~~~p~~~~~~L~~~~~~~p~Lk~L~L~~v~~~~~~l~~lls~  268 (509)
                              .    +..+......+++.+++....-.  ...+         ....+++|+.|+|++..+++..+..++.+
T Consensus        60 --------~----~~~~~~~~~~~l~~L~l~~n~l~--~~~~---------~~~~~~~L~~L~L~~~~l~~~~~~~~~~~  116 (336)
T 2ast_B           60 --------H----PDVTGRLLSQGVIAFRCPRSFMD--QPLA---------EHFSPFRVQHMDLSNSVIEVSTLHGILSQ  116 (336)
T ss_dssp             --------C----HHHHHHHHHTTCSEEECTTCEEC--SCCC---------SCCCCBCCCEEECTTCEECHHHHHHHHTT
T ss_pred             --------C----HHHHHhhhhccceEEEcCCcccc--ccch---------hhccCCCCCEEEccCCCcCHHHHHHHHhh
Confidence                    0    11122222344555544211000  0000         23467899999999888888878888899


Q ss_pred             Cccccceeeecccceee-EEEecccccceEEEEecccCccE--E---EEECCceeEEEEecC
Q 010478          269 CPLLDQLSVVRSETLVS-LKVVGSAIQLKHLRISTCYRLNE--I---KISTPNLLSFKYFGP  324 (509)
Q Consensus       269 CP~Le~L~L~~c~~~~~-l~i~~~~~~Lk~L~l~~c~~l~~--l---~i~aP~L~~L~~~g~  324 (509)
                      ||.|++|+|.+|..... ...-..+++|++|++.+|..+..  +   .-..|+|++|.+.++
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            99999999998852211 11112357888888888753332  1   113456666666555

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.71  E-value=9.2e-09  Score=73.03  Aligned_cols=37  Identities=38%  Similarity=0.489  Sum_probs=33.0

Q ss_pred             cccCCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhhh
Q 010478          111 EDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYL  147 (509)
Q Consensus       111 ~D~is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~l  147 (509)
                      .+.++.||+||+.+||++|+.+|+++++.|||+|+.+
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~   42 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL   42 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHH
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3458999999999999999999999999999999975

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.69  E-value=7.6e-09  Score=111.05  Aligned_cols=104  Identities=19%  Similarity=0.257  Sum_probs=75.3

Q ss_pred             ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE---EEecccccceEEEEecccC-------ccEEEE
Q 010478          242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL---KVVGSAIQLKHLRISTCYR-------LNEIKI  311 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l---~i~~~~~~Lk~L~l~~c~~-------l~~l~i  311 (509)
                      ..+++|++|+|+++.+++..+..+..+||+|++|+|.+|..++..   .+...+++|++|++.+|.-       +..+.-
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            468999999999999999988888878999999999999765431   2223568999999998861       222222


Q ss_pred             ECCceeEEEEecCCc-----cceeeecCCCCceEEEEEe
Q 010478          312 STPNLLSFKYFGPGQ-----ELKLHIENAPQLVDISFRG  345 (509)
Q Consensus       312 ~aP~L~~L~~~g~~~-----~~~~~~~~~~~L~~l~i~~  345 (509)
                      ..|+|++|.+.++..     .......++++|+.+++..
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence            567999999987641     0111223467788887764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.69  E-value=3e-08  Score=106.37  Aligned_cols=228  Identities=18%  Similarity=0.140  Sum_probs=146.3

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE-EEecccccceEEEEec----------ccCccEE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRIST----------CYRLNEI  309 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~----------c~~l~~l  309 (509)
                      +..+++|+.|+|+++.+++..+..++.+||+|+.|+|.++.....+ .+...+++|++|++.+          |..+...
T Consensus       289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~  368 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR  368 (592)
T ss_dssp             GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred             HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence            4568899999999988988888888999999999999865432221 2223468999999995          7654321


Q ss_pred             -----EEECCceeEEEEecCCc--cceeeec-CCCCceEEEEEecc-chhh-----hhhhcccccCCCCccEEEEeechh
Q 010478          310 -----KISTPNLLSFKYFGPGQ--ELKLHIE-NAPQLVDISFRGVM-LTRV-----RNVVGPITSCFPQLKTLELDSCDE  375 (509)
Q Consensus       310 -----~i~aP~L~~L~~~g~~~--~~~~~~~-~~~~L~~l~i~~~~-~~~~-----~~~~~~l~~~l~~L~~L~L~~~~~  375 (509)
                           .-.+|+|++|.+....-  .....+. .+++|+++++.... ...+     +..+..++.++++|+.|.++.|..
T Consensus       369 ~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~  448 (592)
T 3ogk_B          369 GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG  448 (592)
T ss_dssp             HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG
T ss_pred             HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC
Confidence                 22479999999854331  0111222 48899999996311 1111     122344566789999999975543


Q ss_pred             -h-hhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc--cccCCccEEEE
Q 010478          376 -L-YAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR--HSHQHLKLVEL  449 (509)
Q Consensus       376 -~-~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~--c~~~~Lk~V~i  449 (509)
                       + ...+.  ...+++|++|+|..+   .....++..+++.||+|+.|+|....-.    + ..++.  ....+|+.+.+
T Consensus       449 ~l~~~~~~~~~~~~~~L~~L~L~~n---~l~~~~~~~~~~~~~~L~~L~l~~n~l~----~-~~~~~~~~~l~~L~~L~l  520 (592)
T 3ogk_B          449 GLTDLGLSYIGQYSPNVRWMLLGYV---GESDEGLMEFSRGCPNLQKLEMRGCCFS----E-RAIAAAVTKLPSLRYLWV  520 (592)
T ss_dssp             GCCHHHHHHHHHSCTTCCEEEECSC---CSSHHHHHHHHTCCTTCCEEEEESCCCB----H-HHHHHHHHHCSSCCEEEE
T ss_pred             CccHHHHHHHHHhCccceEeeccCC---CCCHHHHHHHHhcCcccCeeeccCCCCc----H-HHHHHHHHhcCccCeeEC
Confidence             2 11122  345789999999533   3555678889999999999999874200    0 00111  13578999999


Q ss_pred             ecccCCccHHHHHHHHHhcCccCCcEEEEe
Q 010478          450 HGFLGRPIDLELAFYILENAMTLEKMVVNR  479 (509)
Q Consensus       450 ~~f~g~~~e~~l~~~lL~na~~Le~m~I~~  479 (509)
                      .+..-+...   ++.+.+..|.|....|..
T Consensus       521 s~n~it~~~---~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          521 QGYRASMTG---QDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             ESCBCCTTC---TTGGGGCCTTEEEEEECC
T ss_pred             cCCcCCHHH---HHHHHHhCCCcEEEEecC
Confidence            887644322   334555556665555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.59  E-value=5e-08  Score=97.02  Aligned_cols=102  Identities=24%  Similarity=0.282  Sum_probs=55.3

Q ss_pred             CCceeEEEEecCCc-cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCccc
Q 010478          313 TPNLLSFKYFGPGQ-ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLT  389 (509)
Q Consensus       313 aP~L~~L~~~g~~~-~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk  389 (509)
                      .++|+.|.+.+..- ..+-.+.++++|+.+++.......    +..-+..+++|+.|.|+.+... ..+|  +..+++|+
T Consensus       182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~----l~~~l~~l~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~  256 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA----LGPAIHHLPKLEELDLRGCTAL-RNYPPIFGGRAPLK  256 (328)
T ss_dssp             STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC----CCGGGGGCTTCCEEECTTCTTC-CBCCCCTTCCCCCC
T ss_pred             CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc----CchhhccCCCCCEEECcCCcch-hhhHHHhcCCCCCC
Confidence            55666666655431 122235566777777776522111    1112356777888888754432 2233  56677888


Q ss_pred             EEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          390 HLHLRVATLNRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       390 ~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      +|+|..+....    .+..-+..+++|+.|++..
T Consensus       257 ~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~  286 (328)
T 4fcg_A          257 RLILKDCSNLL----TLPLDIHRLTQLEKLDLRG  286 (328)
T ss_dssp             EEECTTCTTCC----BCCTTGGGCTTCCEEECTT
T ss_pred             EEECCCCCchh----hcchhhhcCCCCCEEeCCC
Confidence            88874432111    1222356778888887765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.41  E-value=1.2e-08  Score=101.25  Aligned_cols=168  Identities=19%  Similarity=0.277  Sum_probs=78.3

Q ss_pred             cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceee--E-EEecccccceEEEEecccCccE-----EEEECC
Q 010478          243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVS--L-KVVGSAIQLKHLRISTCYRLNE-----IKISTP  314 (509)
Q Consensus       243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~--l-~i~~~~~~Lk~L~l~~c~~l~~-----l~i~aP  314 (509)
                      .+++|++|+|+++.+++.... .++.|+.|++|+|.+|..++.  + .+...+++|++|++.+|..+..     +.-..|
T Consensus       116 ~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~  194 (336)
T 2ast_B          116 QCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS  194 (336)
T ss_dssp             TBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             hCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence            344555555554444433322 233355555555555432221  0 1111234455555554422221     011244


Q ss_pred             -ceeEEEEecCC-----ccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhh-hhccC-CCCCC
Q 010478          315 -NLLSFKYFGPG-----QELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDEL-YAQFS-EHELP  386 (509)
Q Consensus       315 -~L~~L~~~g~~-----~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~-~~~~~-~~~f~  386 (509)
                       +|++|.+.++.     ...+..+.++++|+.+++..... ..+... ..+..+++|++|.++.|..+ ...+. +..++
T Consensus       195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~  272 (336)
T 2ast_B          195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM-LKNDCF-QEFFQLNYLQHLSLSRCYDIIPETLLELGEIP  272 (336)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT-CCGGGG-GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred             cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc-CCHHHH-HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC
Confidence             55555555442     00112234456666666654210 001112 22356688888888876544 22222 56688


Q ss_pred             cccEEEEEeeccCccCHHHHHHHhhcCCCCc
Q 010478          387 NLTHLHLRVATLNRESLLGLASIMKACPFLQ  417 (509)
Q Consensus       387 ~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le  417 (509)
                      +|++|+|..+    ....++..+.+.+|.|+
T Consensus       273 ~L~~L~l~~~----i~~~~~~~l~~~l~~L~  299 (336)
T 2ast_B          273 TLKTLQVFGI----VPDGTLQLLKEALPHLQ  299 (336)
T ss_dssp             TCCEEECTTS----SCTTCHHHHHHHSTTSE
T ss_pred             CCCEEeccCc----cCHHHHHHHHhhCcceE
Confidence            8888888544    33334555666677766

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.34  E-value=1.2e-06  Score=87.75  Aligned_cols=217  Identities=13%  Similarity=0.112  Sum_probs=135.0

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE---EecccccceEEEEecccCccEEEE----EC
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK---VVGSAIQLKHLRISTCYRLNEIKI----ST  313 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~---i~~~~~~Lk~L~l~~c~~l~~l~i----~a  313 (509)
                      +..+++|++|+|++..+++- ....+.+++.|++|++.++.-. .+.   .-..+++|+.|.+.++..+..+..    ..
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l  173 (353)
T 2z80_A           96 FSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL  173 (353)
T ss_dssp             TTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred             cCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence            56788999999988777642 2234678899999999887422 211   123458899999998854555421    25


Q ss_pred             CceeEEEEecCCcc--ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhh---hccC-CCCCCc
Q 010478          314 PNLLSFKYFGPGQE--LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELY---AQFS-EHELPN  387 (509)
Q Consensus       314 P~L~~L~~~g~~~~--~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~---~~~~-~~~f~~  387 (509)
                      ++|+.|.+.+..-.  .+-.+.++++|+++++.........   ..+...+++|+.|+++.+.--.   ..++ ......
T Consensus       174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~  250 (353)
T 2z80_A          174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL---EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL  250 (353)
T ss_dssp             CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH---HHHHHHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred             CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch---hhhhhhcccccEEECCCCccccccccccccccccch
Confidence            78888888876511  1234567788888888873321111   1233457899999998543111   1111 344667


Q ss_pred             ccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc---cccCCccEEEEec--ccCCccHHHHH
Q 010478          388 LTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR---HSHQHLKLVELHG--FLGRPIDLELA  462 (509)
Q Consensus       388 Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~---c~~~~Lk~V~i~~--f~g~~~e~~l~  462 (509)
                      ++.+++....-.+.....+...+..+++|+.|++...       .+..+|.   ....+|+++.+.+  +.+....+.++
T Consensus       251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-------~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l  323 (353)
T 2z80_A          251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-------QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  323 (353)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred             hhccccccccccCcchhhhHHHHhcccCCCEEECCCC-------CCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHH
Confidence            8888886654444444456677889999999999763       2233442   2367899999987  44444446555


Q ss_pred             HHHHhcC
Q 010478          463 FYILENA  469 (509)
Q Consensus       463 ~~lL~na  469 (509)
                      ...+++.
T Consensus       324 ~~~~~~~  330 (353)
T 2z80_A          324 SRWLNKN  330 (353)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            5555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.30  E-value=2.2e-07  Score=92.62  Aligned_cols=214  Identities=16%  Similarity=0.164  Sum_probs=125.2

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE-E-ECCceeE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK-I-STPNLLS  318 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~-i-~aP~L~~  318 (509)
                      +..+++|+.|+|++..+.+-.-   +..++.|+.|++.+|.....+..-..+++|+.|.+.+|.. ..+. + ..++|+.
T Consensus       106 ~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~  181 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KDVTPIANLTDLYS  181 (347)
T ss_dssp             GTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC-CCCGGGGGCTTCSE
T ss_pred             HcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc-CCchhhccCCCCCE
Confidence            4567888888888776654321   6678888888888876544332233457788888877752 2111 1 3577888


Q ss_pred             EEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeecc
Q 010478          319 FKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATL  398 (509)
Q Consensus       319 L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~  398 (509)
                      |.+.++.-.....+..+++|+.+.+.........    . +..+++|+.|.++.+. +....+...+++|++|++..+..
T Consensus       182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~----~-~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT----P-VANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG----G-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC
T ss_pred             EEccCCcccccccccCCCccceeecccCCCCCCc----h-hhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCcc
Confidence            8777665211112566777777777652211111    1 3567788888887443 21111156777888888854432


Q ss_pred             CccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC-ccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEE
Q 010478          399 NRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP-RHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVV  477 (509)
Q Consensus       399 ~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p-~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I  477 (509)
                      ...      ..+..+|+|+.|++...       .+..++ -....+|+.+.+.+..-.....    ..+.+.+.|+.+.+
T Consensus       256 ~~~------~~~~~l~~L~~L~l~~n-------~l~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L  318 (347)
T 4fmz_A          256 SDI------NAVKDLTKLKMLNVGSN-------QISDISVLNNLSQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLFL  318 (347)
T ss_dssp             CCC------GGGTTCTTCCEEECCSS-------CCCCCGGGGGCTTCSEEECCSSCCCGGGH----HHHHTCTTCSEEEC
T ss_pred             CCC------hhHhcCCCcCEEEccCC-------ccCCChhhcCCCCCCEEECcCCcCCCcCh----hHhhccccCCEEEc
Confidence            221      23667888888888653       111222 1235778888887754333222    23456788888887


Q ss_pred             EecC
Q 010478          478 NRTN  481 (509)
Q Consensus       478 ~~~~  481 (509)
                      ....
T Consensus       319 ~~n~  322 (347)
T 4fmz_A          319 SQNH  322 (347)
T ss_dssp             CSSS
T ss_pred             cCCc
Confidence            7543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.26  E-value=4e-07  Score=90.41  Aligned_cols=220  Identities=20%  Similarity=0.219  Sum_probs=139.4

Q ss_pred             hccccCCccceEEEEeecCCCChhhHHHHHHHHhccCcEEEEEEecCCCcceeeecccccccccCCccCcCCcEEEEeeE
Q 010478          176 LQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSV  255 (509)
Q Consensus       176 L~~~~~~~l~~l~l~~~~~~~~~~~~~~wl~~a~~~~v~~L~L~~~~~~~~~~~p~~~~~~L~~~~~~~p~Lk~L~L~~v  255 (509)
                      +.......+..+.+....-.    .+...+.  .-.+++.|+|....-.   .+|.        .+..+++|+.|+|++.
T Consensus        75 l~~~~~~~l~~L~L~~n~l~----~lp~~l~--~l~~L~~L~L~~n~l~---~lp~--------~~~~l~~L~~L~Ls~n  137 (328)
T 4fcg_A           75 LEDATQPGRVALELRSVPLP----QFPDQAF--RLSHLQHMTIDAAGLM---ELPD--------TMQQFAGLETLTLARN  137 (328)
T ss_dssp             HHHHTSTTCCEEEEESSCCS----SCCSCGG--GGTTCSEEEEESSCCC---CCCS--------CGGGGTTCSEEEEESC
T ss_pred             HhcccccceeEEEccCCCch----hcChhhh--hCCCCCEEECCCCCcc---chhH--------HHhccCCCCEEECCCC
Confidence            33333345888887653211    1111111  1347888888754311   2332        3568899999999988


Q ss_pred             EEChhhHHHHHhCCccccceeeecccceeeEE--E--------ecccccceEEEEecccCccEEE---EECCceeEEEEe
Q 010478          256 NVTGEILEFILHNCPLLDQLSVVRSETLVSLK--V--------VGSAIQLKHLRISTCYRLNEIK---ISTPNLLSFKYF  322 (509)
Q Consensus       256 ~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i--------~~~~~~Lk~L~l~~c~~l~~l~---i~aP~L~~L~~~  322 (509)
                      .+.  .+..-+.+++.|+.|+|.+|...+.+.  +        -..+++|+.|.+.++. +..+.   -..++|+.|.+.
T Consensus       138 ~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~  214 (328)
T 4fcg_A          138 PLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIR  214 (328)
T ss_dssp             CCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEE
T ss_pred             ccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEcc
Confidence            776  333447789999999999987544221  1        0125899999999886 33321   136899999998


Q ss_pred             cCCc-cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccC
Q 010478          323 GPGQ-ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLN  399 (509)
Q Consensus       323 g~~~-~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~  399 (509)
                      ++.- ..+-.+..+++|+.+++.....   ...+...+..+++|+.|.|+.+... ..+|  +..+++|++|+|..+...
T Consensus       215 ~N~l~~l~~~l~~l~~L~~L~Ls~n~~---~~~~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          215 NSPLSALGPAIHHLPKLEELDLRGCTA---LRNYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             SSCCCCCCGGGGGCTTCCEEECTTCTT---CCBCCCCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECTTCTTC
T ss_pred             CCCCCcCchhhccCCCCCEEECcCCcc---hhhhHHHhcCCCCCCEEECCCCCch-hhcchhhhcCCCCCEEeCCCCCch
Confidence            8762 1223467889999999876211   1112234567899999999865533 3344  678899999999543221


Q ss_pred             ccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          400 RESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       400 ~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                        +  .+..-+..+++|+.+.+..
T Consensus       291 --~--~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          291 --S--RLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             --C--CCCGGGGGSCTTCEEECCG
T ss_pred             --h--hccHHHhhccCceEEeCCH
Confidence              1  2345577888888887753

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.21  E-value=6.1e-07  Score=87.83  Aligned_cols=215  Identities=16%  Similarity=0.129  Sum_probs=127.1

Q ss_pred             CccCcCCcEEEEeeEEEChhh-HHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE-----EECC
Q 010478          241 LSGVKYLRSLRLFSVNVTGEI-LEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK-----ISTP  314 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~-l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~-----i~aP  314 (509)
                      +..+++|+.|+|++..++... ....+.+++.|+.|+|+++........-..+++|+.|.+.++. +..+.     -..+
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~  126 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLR  126 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCT
T ss_pred             hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhcc
Confidence            467899999999887665321 1122346899999999988633221212346889999988764 22111     1357


Q ss_pred             ceeEEEEecCCcc--ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccE
Q 010478          315 NLLSFKYFGPGQE--LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTH  390 (509)
Q Consensus       315 ~L~~L~~~g~~~~--~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~  390 (509)
                      +|++|.+.+..-.  .+..+.++++|+.+++......  +......+..+++|+.|+++.+. +....+  +..+++|++
T Consensus       127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  203 (306)
T 2z66_A          127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ--ENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQV  203 (306)
T ss_dssp             TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG--GGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCE
T ss_pred             CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc--cccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCE
Confidence            8889988776511  1123566788998888752211  11233455678899999998432 322222  667889999


Q ss_pred             EEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCccccCCccEEEEec--ccCCccHHHHHHHHH
Q 010478          391 LHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHG--FLGRPIDLELAFYIL  466 (509)
Q Consensus       391 L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V~i~~--f~g~~~e~~l~~~lL  466 (509)
                      |+|..+.......    ..+..+++|+.|++....-...  ....+ .....+|+.+.+.|  +.+......|.+++-
T Consensus       204 L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~--~~~~~-~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~  274 (306)
T 2z66_A          204 LNMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIMTS--KKQEL-QHFPSSLAFLNLTQNDFACTCEHQSFLQWIK  274 (306)
T ss_dssp             EECTTSCCSBCCS----GGGTTCTTCCEEECTTSCCCBC--SSSSC-CCCCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred             EECCCCccCccCh----hhccCcccCCEeECCCCCCccc--CHHHH-HhhhccCCEEEccCCCeecccChHHHHHHHH
Confidence            9995543222211    1256789999998866310000  00000 11225899999977  555555556666653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.18  E-value=6.5e-07  Score=89.21  Aligned_cols=212  Identities=14%  Similarity=0.139  Sum_probs=132.6

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE--EECCceeE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK--ISTPNLLS  318 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~--i~aP~L~~  318 (509)
                      +..+++|++|+|++..+++-.   -+.+++.|++|++.++.-.. +..-..+++|+.|.+.+|.....+.  -..++|++
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~~---~~~~l~~L~~L~l~~n~i~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~  159 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDIS---ALQNLTNLRELYLNEDNISD-ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY  159 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG---GGTTCTTCSEEECTTSCCCC-CGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred             hhcCCcCCEEEccCCcccCch---HHcCCCcCCEEECcCCcccC-chhhccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence            457788999999887766521   26788999999998875322 1112345788999988886433322  13578888


Q ss_pred             EEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeecc
Q 010478          319 FKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATL  398 (509)
Q Consensus       319 L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~  398 (509)
                      |.+.++.-.....+..+++|+.+++.........    . +..+++++.|.+..+. +....+...+++|++|++..+..
T Consensus       160 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l  233 (347)
T 4fmz_A          160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS----P-LASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNNKI  233 (347)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCG----G-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EEecCCCcCCchhhccCCCCCEEEccCCcccccc----c-ccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCCcc
Confidence            8888765212222667888888888763211111    1 4567888988887432 21111156778999999955432


Q ss_pred             CccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC-ccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEE
Q 010478          399 NRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP-RHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVV  477 (509)
Q Consensus       399 ~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p-~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I  477 (509)
                      ...     .. +..+|+|+.|++....       ...++ -....+|+.+.+.+..-..-  .    .+...+.|+.+.+
T Consensus       234 ~~~-----~~-~~~l~~L~~L~l~~n~-------l~~~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~L  294 (347)
T 4fmz_A          234 TDL-----SP-LANLSQLTWLEIGTNQ-------ISDINAVKDLTKLKMLNVGSNQISDI--S----VLNNLSQLNSLFL  294 (347)
T ss_dssp             CCC-----GG-GTTCTTCCEEECCSSC-------CCCCGGGTTCTTCCEEECCSSCCCCC--G----GGGGCTTCSEEEC
T ss_pred             CCC-----cc-hhcCCCCCEEECCCCc-------cCCChhHhcCCCcCEEEccCCccCCC--h----hhcCCCCCCEEEC
Confidence            221     11 7788999999887631       11122 12357899998877533221  1    3567899999988


Q ss_pred             EecC
Q 010478          478 NRTN  481 (509)
Q Consensus       478 ~~~~  481 (509)
                      ....
T Consensus       295 ~~n~  298 (347)
T 4fmz_A          295 NNNQ  298 (347)
T ss_dssp             CSSC
T ss_pred             cCCc
Confidence            7543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.15  E-value=2e-07  Score=94.56  Aligned_cols=209  Identities=19%  Similarity=0.177  Sum_probs=108.5

Q ss_pred             CccCcCCcEEEEeeEEEC---h---h---hHHHHHhCCccccceeeeccccee----eE-EEecccccceEEEEecccCc
Q 010478          241 LSGVKYLRSLRLFSVNVT---G---E---ILEFILHNCPLLDQLSVVRSETLV----SL-KVVGSAIQLKHLRISTCYRL  306 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~---~---~---~l~~lls~CP~Le~L~L~~c~~~~----~l-~i~~~~~~Lk~L~l~~c~~l  306 (509)
                      +..+++|+.|+|+++.+.   +   .   .+...+..++.|++|+|+++.--.    .+ ..-..+++|++|.+.+|.- 
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-  134 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-  134 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-
Confidence            446788888888776432   1   1   234445678888888888775221    01 0112347888888887752 


Q ss_pred             cEE---EE-E----C---------CceeEEEEecCCcc---ce---eeecCCCCceEEEEEeccch--hhhhhhcccccC
Q 010478          307 NEI---KI-S----T---------PNLLSFKYFGPGQE---LK---LHIENAPQLVDISFRGVMLT--RVRNVVGPITSC  361 (509)
Q Consensus       307 ~~l---~i-~----a---------P~L~~L~~~g~~~~---~~---~~~~~~~~L~~l~i~~~~~~--~~~~~~~~l~~~  361 (509)
                      ...   .+ .    .         |+|++|.+.++.-.   .+   -.+..+++|+.+++......  .........+..
T Consensus       135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~  214 (386)
T 2ca6_A          135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY  214 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred             CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence            110   00 0    1         78888887766510   11   12345667777777663211  111122224456


Q ss_pred             CCCccEEEEeechhh---hhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhc--CCCCcEEEEEEeecCCccCCcc
Q 010478          362 FPQLKTLELDSCDEL---YAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKA--CPFLQTLIVQFDYNGYKVGRRR  434 (509)
Q Consensus       362 l~~L~~L~L~~~~~~---~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~--~P~Le~L~i~~~~~~~~~~~~~  434 (509)
                      +++|+.|.|+.+.--   ...++  +..+++|++|+|..+.........+...++.  +|+|+.|++....-..  ....
T Consensus       215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~--~g~~  292 (386)
T 2ca6_A          215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL--DAVR  292 (386)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH--HHHH
T ss_pred             CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH--HHHH
Confidence            777888877743310   12222  5566777887774433222222234445543  7778877776521000  0000


Q ss_pred             ccCccc---cCCccEEEEecc
Q 010478          435 KVPRHS---HQHLKLVELHGF  452 (509)
Q Consensus       435 ~~p~c~---~~~Lk~V~i~~f  452 (509)
                      .++...   +.+|+.+.+.+-
T Consensus       293 ~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          293 TLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECTTS
T ss_pred             HHHHHHHhcCCCceEEEccCC
Confidence            123222   467777777663

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.14  E-value=8.9e-08  Score=99.35  Aligned_cols=257  Identities=17%  Similarity=0.109  Sum_probs=133.1

Q ss_pred             ccCcEEEEEEecCCCc--ceeeecccccccccCCccCcCCcEEEEeeEEEChhhHHHHHhCCc----cccceeeecccce
Q 010478          210 SKRVQIFELELWPRLK--NYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHNCP----LLDQLSVVRSETL  283 (509)
Q Consensus       210 ~~~v~~L~L~~~~~~~--~~~~p~~~~~~L~~~~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP----~Le~L~L~~c~~~  283 (509)
                      .++++.|++..+.-..  ...++        ..+..+++|++|+|++..+++..+..+...++    .|++|+|.+|.-.
T Consensus        27 ~~~L~~L~L~~~~l~~~~~~~l~--------~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~   98 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLTEARCKDIS--------SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT   98 (461)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHH--------HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred             cCCccEEEccCCCCCHHHHHHHH--------HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCC
Confidence            3578888887543110  00111        02345688888888888887777777776666    6888888887522


Q ss_pred             e----e-EEEecccccceEEEEecccCccEEE---------EECCceeEEEEecCCccc------eeeecCCCCceEEEE
Q 010478          284 V----S-LKVVGSAIQLKHLRISTCYRLNEIK---------ISTPNLLSFKYFGPGQEL------KLHIENAPQLVDISF  343 (509)
Q Consensus       284 ~----~-l~i~~~~~~Lk~L~l~~c~~l~~l~---------i~aP~L~~L~~~g~~~~~------~~~~~~~~~L~~l~i  343 (509)
                      .    . ...-..+++|++|++.++. +....         -..++|++|.+.++.-..      .-.+..+++|+++++
T Consensus        99 ~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L  177 (461)
T 1z7x_W           99 GAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV  177 (461)
T ss_dssp             GGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEEC
T ss_pred             HHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEEC
Confidence            1    0 0111235788888888775 22110         013468888877664100      112344677777777


Q ss_pred             Eeccch--hhhhhhcccccCCCCccEEEEeechhhhh---ccC--CCCCCcccEEEEEeeccCccCHHHHHH----Hhhc
Q 010478          344 RGVMLT--RVRNVVGPITSCFPQLKTLELDSCDELYA---QFS--EHELPNLTHLHLRVATLNRESLLGLAS----IMKA  412 (509)
Q Consensus       344 ~~~~~~--~~~~~~~~l~~~l~~L~~L~L~~~~~~~~---~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~----lL~~  412 (509)
                      ....-.  ........+....++|++|.++.+.--..   .++  ...+++|++|++..+.   ....++..    +...
T Consensus       178 ~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---l~~~~~~~l~~~~~~~  254 (461)
T 1z7x_W          178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK---LGDVGMAELCPGLLHP  254 (461)
T ss_dssp             CSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB---CHHHHHHHHHHHHTST
T ss_pred             cCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc---CChHHHHHHHHHHhcC
Confidence            662211  11111222223455778887774421110   112  3456778888774432   22222222    2335


Q ss_pred             CCCCcEEEEEEeecCCccCCccccCcc--ccCCccEEEEecccCCccHH-HHHHHHHhcCccCCcEEEEec
Q 010478          413 CPFLQTLIVQFDYNGYKVGRRRKVPRH--SHQHLKLVELHGFLGRPIDL-ELAFYILENAMTLEKMVVNRT  480 (509)
Q Consensus       413 ~P~Le~L~i~~~~~~~~~~~~~~~p~c--~~~~Lk~V~i~~f~g~~~e~-~l~~~lL~na~~Le~m~I~~~  480 (509)
                      +++|+.|++....-..  .....++..  ...+|+.+.+.+-.-..... .+...+..+.+.|+.+.+...
T Consensus       255 ~~~L~~L~L~~n~l~~--~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          255 SSRLRTLWIWECGITA--KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             TCCCCEEECTTSCCCH--HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             CCCceEEECcCCCCCH--HHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence            7778877775521000  000001111  24678888887643222222 344444445578888887643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.09  E-value=9.8e-07  Score=88.78  Aligned_cols=61  Identities=21%  Similarity=0.161  Sum_probs=41.3

Q ss_pred             ccCcCCcEEEEeeEEEC--------hhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEeccc
Q 010478          242 SGVKYLRSLRLFSVNVT--------GEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCY  304 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~--------~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~  304 (509)
                      ..|++|+.|.+..+.+.        ..++..++..+|.||+|.|.++.++....+.  .++|++|.+..|.
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~--~~~L~~L~L~~~~  204 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP--RPNLKSLEIISGG  204 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB--CTTCSEEEEECSB
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc--CCCCcEEEEecCC
Confidence            35688888888665322        2357789999999999999988543321122  3677777777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.06  E-value=7.4e-06  Score=81.83  Aligned_cols=224  Identities=17%  Similarity=0.164  Sum_probs=119.5

Q ss_pred             CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEecccCccEEE---E-ECCcee
Q 010478          244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCYRLNEIK---I-STPNLL  317 (509)
Q Consensus       244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~~l~~l~---i-~aP~L~  317 (509)
                      +++|+.|+|++..+++-. ...+.+++.|+.|++.++. ++.+..  -..+++|++|++.++. +..+.   + ..++|+
T Consensus        51 ~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~  127 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLT  127 (353)
T ss_dssp             CTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCS
T ss_pred             cccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCC
Confidence            357777777766544311 1124567777777777763 222110  1234677777777664 33222   1 256778


Q ss_pred             EEEEecCCc-cce--eeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEE
Q 010478          318 SFKYFGPGQ-ELK--LHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLH  392 (509)
Q Consensus       318 ~L~~~g~~~-~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~  392 (509)
                      +|.+.+..- ..+  ..+.++++|+.+++....  .........+..+++|+.|.++.+. +....+  +..+++|++|+
T Consensus       128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~  204 (353)
T 2z80_A          128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD--TFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLI  204 (353)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS--SCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEE
T ss_pred             EEECCCCCCcccCchhhhccCCCCcEEECCCCc--cccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhccccCCeec
Confidence            887776541 122  246678888888887631  0111112334677889999998543 222223  66788999999


Q ss_pred             EEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCC-ccCCccccCccccCCccEEEEecccCCccHHHHHHHHHhcCcc
Q 010478          393 LRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGY-KVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMT  471 (509)
Q Consensus       393 L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~-~~~~~~~~p~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~  471 (509)
                      +..+...  ..  -..++..+++|+.|++....-.. +......  .-....++.+.+.+..-....+.-+--.+.+.+.
T Consensus       205 l~~n~l~--~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~  278 (353)
T 2z80_A          205 LHMKQHI--LL--LEIFVDVTSSVECLELRDTDLDTFHFSELST--GETNSLIKKFTFRNVKITDESLFQVMKLLNQISG  278 (353)
T ss_dssp             EECSCST--TH--HHHHHHHTTTEEEEEEESCBCTTCCCC--------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred             CCCCccc--cc--hhhhhhhcccccEEECCCCcccccccccccc--ccccchhhccccccccccCcchhhhHHHHhcccC
Confidence            9554321  11  23456678999999997642110 0000000  0123445555555544333333333334455666


Q ss_pred             CCcEEEEe
Q 010478          472 LEKMVVNR  479 (509)
Q Consensus       472 Le~m~I~~  479 (509)
                      |+.+.+..
T Consensus       279 L~~L~Ls~  286 (353)
T 2z80_A          279 LLELEFSR  286 (353)
T ss_dssp             CCEEECCS
T ss_pred             CCEEECCC
Confidence            66666553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.05  E-value=2.4e-06  Score=88.95  Aligned_cols=208  Identities=18%  Similarity=0.181  Sum_probs=104.0

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE--EECCceeE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK--ISTPNLLS  318 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~--i~aP~L~~  318 (509)
                      +..+++|+.|++++..+.+-.   .+..++.|+.|++.+|....... ...+++|+.|.+.+|. +..+.  -..|+|+.
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~  247 (466)
T 1o6v_A          173 LANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQ-LKDIGTLASLTNLTD  247 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred             hccCCCCCEEECcCCcCCCCh---hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCC-cccchhhhcCCCCCE
Confidence            445666777777666554421   14566777777776664221111 1224667777776664 22211  12466777


Q ss_pred             EEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeecc
Q 010478          319 FKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATL  398 (509)
Q Consensus       319 L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~  398 (509)
                      |.+.++.-.....+..+++|+.+++.........    . +..+++|+.|.++.+. +....+...+++|++|+|..+..
T Consensus       248 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~----~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n~l  321 (466)
T 1o6v_A          248 LDLANNQISNLAPLSGLTKLTELKLGANQISNIS----P-LAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNNI  321 (466)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG----G-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccccchhhhcCCCCCEEECCCCccCccc----c-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCCcC
Confidence            7776654111112556677777776652211111    1 3456777777776432 21111245667777777744322


Q ss_pred             CccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC-ccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEE
Q 010478          399 NRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP-RHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVV  477 (509)
Q Consensus       399 ~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p-~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I  477 (509)
                      ....     . +..+|+|+.|++....       +..++ -....+|+.+.+.+..-... ..     +.+.+.|+.+.+
T Consensus       322 ~~~~-----~-~~~l~~L~~L~l~~n~-------l~~~~~l~~l~~L~~L~l~~n~l~~~-~~-----~~~l~~L~~L~l  382 (466)
T 1o6v_A          322 SDIS-----P-VSSLTKLQRLFFYNNK-------VSDVSSLANLTNINWLSAGHNQISDL-TP-----LANLTRITQLGL  382 (466)
T ss_dssp             SCCG-----G-GGGCTTCCEEECCSSC-------CCCCGGGTTCTTCCEEECCSSCCCBC-GG-----GTTCTTCCEEEC
T ss_pred             CCch-----h-hccCccCCEeECCCCc-------cCCchhhccCCCCCEEeCCCCccCcc-ch-----hhcCCCCCEEec
Confidence            2111     1 4567777777775421       11111 11345666666655332211 11     455666666655


Q ss_pred             E
Q 010478          478 N  478 (509)
Q Consensus       478 ~  478 (509)
                      .
T Consensus       383 ~  383 (466)
T 1o6v_A          383 N  383 (466)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.04  E-value=3.6e-06  Score=87.58  Aligned_cols=209  Identities=15%  Similarity=0.169  Sum_probs=129.2

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE--EECCceeE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK--ISTPNLLS  318 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~--i~aP~L~~  318 (509)
                      +..+++|+.|+|.+..+.+..-   +.+++.|++|++.+|.- +.+.--..+++|++|++.+|. +..+.  -..++|+.
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~  160 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQI-TDIDPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQ  160 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred             hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCC-CCChHHcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence            4577889999998877765322   77889999999988752 221112345788889888775 22211  13577888


Q ss_pred             EEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeecc
Q 010478          319 FKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATL  398 (509)
Q Consensus       319 L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~  398 (509)
                      |.+.+..... ..+.++++|+.+++........     ..+..+++|++|.+..+. +....+...+++|++|++..+..
T Consensus       161 L~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l  233 (466)
T 1o6v_A          161 LSFGNQVTDL-KPLANLTTLERLDISSNKVSDI-----SVLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQL  233 (466)
T ss_dssp             EEEEESCCCC-GGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSSCC
T ss_pred             eecCCcccCc-hhhccCCCCCEEECcCCcCCCC-----hhhccCCCCCEEEecCCc-ccccccccccCCCCEEECCCCCc
Confidence            8876544211 2367788888888876322111     124567889999987443 21222255678899999855432


Q ss_pred             CccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCcccc-CccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEE
Q 010478          399 NRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKV-PRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVV  477 (509)
Q Consensus       399 ~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~-p~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I  477 (509)
                      ...      ..+..+++|+.|++....       .... +-....+|+.+.+.+..-..-. .     +...+.|+.+.+
T Consensus       234 ~~~------~~l~~l~~L~~L~l~~n~-------l~~~~~~~~l~~L~~L~l~~n~l~~~~-~-----~~~l~~L~~L~L  294 (466)
T 1o6v_A          234 KDI------GTLASLTNLTDLDLANNQ-------ISNLAPLSGLTKLTELKLGANQISNIS-P-----LAGLTALTNLEL  294 (466)
T ss_dssp             CCC------GGGGGCTTCSEEECCSSC-------CCCCGGGTTCTTCSEEECCSSCCCCCG-G-----GTTCTTCSEEEC
T ss_pred             ccc------hhhhcCCCCCEEECCCCc-------cccchhhhcCCCCCEEECCCCccCccc-c-----ccCCCccCeEEc
Confidence            221      236678999999887631       1111 1224578899888774322211 1     567789999888


Q ss_pred             Eec
Q 010478          478 NRT  480 (509)
Q Consensus       478 ~~~  480 (509)
                      ...
T Consensus       295 ~~n  297 (466)
T 1o6v_A          295 NEN  297 (466)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.04  E-value=2.5e-06  Score=88.25  Aligned_cols=95  Identities=19%  Similarity=0.118  Sum_probs=43.8

Q ss_pred             cCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC
Q 010478          360 SCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP  437 (509)
Q Consensus       360 ~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p  437 (509)
                      ..+++|+.|.|+.+. +....+  +..+++|++|+|..+.-...    ....+..+|+|+.|++...       .+..+|
T Consensus       320 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N-------~l~~~~  387 (455)
T 3v47_A          320 WGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHIRAL----GDQSFLGLPNLKELALDTN-------QLKSVP  387 (455)
T ss_dssp             TTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSS-------CCSCCC
T ss_pred             cCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCCccccc----ChhhccccccccEEECCCC-------ccccCC
Confidence            345556666655321 111111  34455666666533221111    0122344566666665442       222232


Q ss_pred             c---cccCCccEEEEec--ccCCccHHHHHHHHH
Q 010478          438 R---HSHQHLKLVELHG--FLGRPIDLELAFYIL  466 (509)
Q Consensus       438 ~---c~~~~Lk~V~i~~--f~g~~~e~~l~~~lL  466 (509)
                      .   ....+|+.+.+.+  +.+....+.++...+
T Consensus       388 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l  421 (455)
T 3v47_A          388 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL  421 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred             HhHhccCCcccEEEccCCCcccCCCcchHHHHHH
Confidence            2   2356788888876  445544455554333

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.04  E-value=1.6e-06  Score=85.25  Aligned_cols=167  Identities=16%  Similarity=0.197  Sum_probs=100.8

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE-E-ECCceeE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK-I-STPNLLS  318 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~-i-~aP~L~~  318 (509)
                      +..+++|+.|+|++..+.+-.-   +..++.|+.|++.++. ++.+.--..+++|+.|.+.++. +..+. + ..++|+.
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~  133 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQV  133 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCE
T ss_pred             hhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCC-CCCchhhcCCCCCCE
Confidence            4466778888887776654221   6677888888887765 2222112234677777777765 22221 1 2467778


Q ss_pred             EEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeecc
Q 010478          319 FKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATL  398 (509)
Q Consensus       319 L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~  398 (509)
                      |.+.+..-.....+..+++|+.+++.........    . +..+++|+.|.++.+. +....+...+++|++|+|..+..
T Consensus       134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~----~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT----P-LANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTSCC
T ss_pred             EECCCCccCcCccccCCCCccEEEccCCcCCCCh----h-hcCCCCCCEEECCCCc-cCcChhhcCCCCCCEEEccCCcc
Confidence            8777665111112567788888888763221111    1 4678899999987432 21111256788899999855432


Q ss_pred             CccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478          399 NRESLLGLASIMKACPFLQTLIVQFD  424 (509)
Q Consensus       399 ~~~~~~~l~~lL~~~P~Le~L~i~~~  424 (509)
                      ....     . +..+|+|+.|++...
T Consensus       208 ~~~~-----~-l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          208 SDVS-----P-LANTSNLFIVTLTNQ  227 (308)
T ss_dssp             CBCG-----G-GTTCTTCCEEEEEEE
T ss_pred             Cccc-----c-ccCCCCCCEEEccCC
Confidence            2211     1 678999999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.03  E-value=3.9e-07  Score=92.42  Aligned_cols=182  Identities=17%  Similarity=0.138  Sum_probs=105.7

Q ss_pred             ccCcCCcEEEEeeEEEChh---hHHHHHhCCccccceeeeccccee--eEEEec---cc---------ccceEEEEeccc
Q 010478          242 SGVKYLRSLRLFSVNVTGE---ILEFILHNCPLLDQLSVVRSETLV--SLKVVG---SA---------IQLKHLRISTCY  304 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~---~l~~lls~CP~Le~L~L~~c~~~~--~l~i~~---~~---------~~Lk~L~l~~c~  304 (509)
                      ..+++|+.|+|++..+++.   .+...+..|+.|+.|+|.+|.--.  ...+..   .+         ++|++|.+.+|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            4678888888888887765   355566778888888888875311  001111   11         688888888775


Q ss_pred             Cc-cEEE------EECCceeEEEEecCCcc-------ceeeecCCCCceEEEEEeccchhh-hhhhcccccCCCCccEEE
Q 010478          305 RL-NEIK------ISTPNLLSFKYFGPGQE-------LKLHIENAPQLVDISFRGVMLTRV-RNVVGPITSCFPQLKTLE  369 (509)
Q Consensus       305 ~l-~~l~------i~aP~L~~L~~~g~~~~-------~~~~~~~~~~L~~l~i~~~~~~~~-~~~~~~l~~~l~~L~~L~  369 (509)
                      -- ..+.      -..++|++|.+.++.-.       .+-.+..+++|+.+++........ ...+...+..+++|+.|.
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            21 1111      13578888888776511       011455778888888876322110 112233446778888888


Q ss_pred             Eeechhhh---hccC--C--CCCCcccEEEEEeeccCccCHHHHHHHh-hcCCCCcEEEEEE
Q 010478          370 LDSCDELY---AQFS--E--HELPNLTHLHLRVATLNRESLLGLASIM-KACPFLQTLIVQF  423 (509)
Q Consensus       370 L~~~~~~~---~~~~--~--~~f~~Lk~L~L~~~~~~~~~~~~l~~lL-~~~P~Le~L~i~~  423 (509)
                      |+.+.--.   ..++  +  ..+++|++|+|..+.....+...+...+ ..+|+|+.|++..
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~  312 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG  312 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence            87443110   1112  2  3478888888854432222222355544 5578888888765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.00  E-value=1.2e-06  Score=90.89  Aligned_cols=8  Identities=13%  Similarity=0.588  Sum_probs=3.7

Q ss_pred             CcEEEEEE
Q 010478          212 RVQIFELE  219 (509)
Q Consensus       212 ~v~~L~L~  219 (509)
                      +++.|+|.
T Consensus       100 ~L~~L~Ls  107 (452)
T 3zyi_A          100 HLEVLQLG  107 (452)
T ss_dssp             TCCEEECC
T ss_pred             CCCEEECC
Confidence            44444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.99  E-value=2.6e-06  Score=89.39  Aligned_cols=223  Identities=13%  Similarity=0.072  Sum_probs=137.5

Q ss_pred             hhHHHHHHHHhc--cCcEEEEEEecCCCcceeeecccccccccCCccCcCCcEEEEeeEEEChhhHHHHHhCCcccccee
Q 010478          199 SEITNWVYSALS--KRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLS  276 (509)
Q Consensus       199 ~~~~~wl~~a~~--~~v~~L~L~~~~~~~~~~~p~~~~~~L~~~~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~  276 (509)
                      ..+...+.....  .+++.|+|....-.   .++..       .+..+++|+.|+|++..+++..-   +.+++.|+.|+
T Consensus        20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~---~~~~~-------~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~   86 (487)
T 3oja_A           20 SSLKQALASLRQSAWNVKELDLSGNPLS---QISAA-------DLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLD   86 (487)
T ss_dssp             TTHHHHHHTTSTTGGGCCEEECCSSCCC---CCCGG-------GGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEE
T ss_pred             hhhHHHHHHhcccCCCccEEEeeCCcCC---CCCHH-------HHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEE
Confidence            444444443332  26788877643211   11111       35678999999998876653211   67899999999


Q ss_pred             eecccceeeEEEecccccceEEEEecccCccEEEE-ECCceeEEEEecCC--ccceeeecCCCCceEEEEEeccchhhhh
Q 010478          277 VVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKI-STPNLLSFKYFGPG--QELKLHIENAPQLVDISFRGVMLTRVRN  353 (509)
Q Consensus       277 L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i-~aP~L~~L~~~g~~--~~~~~~~~~~~~L~~l~i~~~~~~~~~~  353 (509)
                      |+++. ++.+.   ..++|+.|.+.++. +..+.. ..|+|+.|.+.+..  +..+..+.++++|+.+++......  +.
T Consensus        87 Ls~N~-l~~l~---~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~  159 (487)
T 3oja_A           87 LNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID--TV  159 (487)
T ss_dssp             CCSSE-EEEEE---ECTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC--EE
T ss_pred             ecCCc-CCCCC---CCCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC--Cc
Confidence            99984 33332   23899999999887 444333 36889999998775  112345677889999888763211  11


Q ss_pred             hhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCc
Q 010478          354 VVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRR  433 (509)
Q Consensus       354 ~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~  433 (509)
                      ....+...+++|+.|+|+.+. +....+...+++|++|+|..+....     +..-+..+++|+.|++...       .+
T Consensus       160 ~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N-------~l  226 (487)
T 3oja_A          160 NFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNN-------KL  226 (487)
T ss_dssp             EGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTS-------CC
T ss_pred             ChHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEECCCCCCCC-----CCHhHcCCCCccEEEecCC-------cC
Confidence            122344568899999998443 2222224468899999995543222     2222567899999998763       22


Q ss_pred             cccCcc--ccCCccEEEEecccC
Q 010478          434 RKVPRH--SHQHLKLVELHGFLG  454 (509)
Q Consensus       434 ~~~p~c--~~~~Lk~V~i~~f~g  454 (509)
                      ..+|..  ...+|+.+.+.|-..
T Consensus       227 ~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          227 VLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             CEECTTCCCCTTCCEEECTTCCB
T ss_pred             cccchhhccCCCCCEEEcCCCCC
Confidence            233322  346788888776443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.97  E-value=2.7e-06  Score=83.55  Aligned_cols=186  Identities=15%  Similarity=0.146  Sum_probs=114.1

Q ss_pred             ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE-E-ECCceeEE
Q 010478          242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK-I-STPNLLSF  319 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~-i-~aP~L~~L  319 (509)
                      ..+++|+.|++.+..+.+-  . -+..++.|+.|++++|.-..... -..+++|+.|.+.++. +..+. + ..++|+.|
T Consensus        38 ~~l~~L~~L~l~~~~i~~l--~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L  112 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTI--E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTL  112 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEE
T ss_pred             HHcCCcCEEEeeCCCccCc--h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEE
Confidence            4678999999998876652  1 25779999999999985322111 3446899999999886 33332 1 25788888


Q ss_pred             EEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccC
Q 010478          320 KYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLN  399 (509)
Q Consensus       320 ~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~  399 (509)
                      .++++.-...-.+..+++|+.+++.........    . +..+++|+.|.++.+. +....+...+++|++|++..+...
T Consensus       113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~----~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS----P-LAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG----G-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCchhhcCCCCCCEEECCCCccCcCc----c-ccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCCccC
Confidence            887765211113667788888888763221111    1 4567888888887442 211111567788888888544322


Q ss_pred             ccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC-ccccCCccEEEEec
Q 010478          400 RESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP-RHSHQHLKLVELHG  451 (509)
Q Consensus       400 ~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p-~c~~~~Lk~V~i~~  451 (509)
                      ...     . +..+++|+.|++...       .+..++ -....+|+.+.+.+
T Consensus       187 ~~~-----~-l~~l~~L~~L~L~~N-------~l~~~~~l~~l~~L~~L~l~~  226 (308)
T 1h6u_A          187 DIS-----P-LASLPNLIEVHLKNN-------QISDVSPLANTSNLFIVTLTN  226 (308)
T ss_dssp             CCG-----G-GGGCTTCCEEECTTS-------CCCBCGGGTTCTTCCEEEEEE
T ss_pred             cCh-----h-hcCCCCCCEEEccCC-------ccCccccccCCCCCCEEEccC
Confidence            211     1 677888888887653       111111 12346677777665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.96  E-value=2.5e-06  Score=84.07  Aligned_cols=212  Identities=11%  Similarity=0.059  Sum_probs=130.3

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEE-ECCceeEE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKI-STPNLLSF  319 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i-~aP~L~~L  319 (509)
                      +..+++|+.|+|++..+.+..  . +..++.|+.|+++++. ++.+.   ..++|+.|.+.++. +..+.. ..++|+.|
T Consensus        54 ~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L  125 (317)
T 3o53_A           54 LAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNI  125 (317)
T ss_dssp             HTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE---ECTTCCEEECCSSC-CSEEEECCCSSCEEE
T ss_pred             hhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc---CCCCcCEEECCCCc-cCCcCccccCCCCEE
Confidence            457788999999876654321  1 6778999999998875 33322   23789999988876 444443 36889999


Q ss_pred             EEecCCc--cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeec
Q 010478          320 KYFGPGQ--ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVAT  397 (509)
Q Consensus       320 ~~~g~~~--~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~  397 (509)
                      .+.+..-  ..+..+..+++|+.+++....-.  ......+...+++|+.|.++.+. +........+++|++|+|..+.
T Consensus       126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~  202 (317)
T 3o53_A          126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEID--TVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNK  202 (317)
T ss_dssp             ECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC--EEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSC
T ss_pred             ECCCCCCCCccchhhhccCCCCEEECCCCCCC--cccHHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECCCCc
Confidence            8887651  12335566788888888762211  11122344567899999998433 2111114458899999995543


Q ss_pred             cCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc--cccCCccEEEEecccCCccHHHHHHHHHhcCccCCcE
Q 010478          398 LNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR--HSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKM  475 (509)
Q Consensus       398 ~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~--c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m  475 (509)
                      -..     +..-+..+++|+.|++...       .+..+|.  ....+|+.+.+.+-.-..   ..+...+...+.|+.+
T Consensus       203 l~~-----l~~~~~~l~~L~~L~L~~N-------~l~~l~~~~~~l~~L~~L~l~~N~~~~---~~~~~~~~~~~~L~~l  267 (317)
T 3o53_A          203 LAF-----MGPEFQSAAGVTWISLRNN-------KLVLIEKALRFSQNLEHFDLRGNGFHC---GTLRDFFSKNQRVQTV  267 (317)
T ss_dssp             CCE-----ECGGGGGGTTCSEEECTTS-------CCCEECTTCCCCTTCCEEECTTCCCBH---HHHHHHHHTCHHHHHH
T ss_pred             CCc-----chhhhcccCcccEEECcCC-------cccchhhHhhcCCCCCEEEccCCCccC---cCHHHHHhccccceEE
Confidence            222     2222667899999998663       2222332  134678888887643321   1233445566667766


Q ss_pred             EEE
Q 010478          476 VVN  478 (509)
Q Consensus       476 ~I~  478 (509)
                      .+.
T Consensus       268 ~l~  270 (317)
T 3o53_A          268 AKQ  270 (317)
T ss_dssp             HHH
T ss_pred             ECC
Confidence            655

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.96  E-value=1e-05  Score=82.01  Aligned_cols=186  Identities=19%  Similarity=0.179  Sum_probs=103.0

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEE-CCceeEE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKIS-TPNLLSF  319 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~-aP~L~~L  319 (509)
                      +..+++|+.|+|++..+++..    +..++.|+.|++.++. ++.+..   ..+|+.|++.++. +..+... .++|+.|
T Consensus       161 ~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~-l~~~~~---~~~L~~L~l~~n~-l~~~~~~~~~~L~~L  231 (390)
T 3o6n_A          161 FQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNL-LSTLAI---PIAVEELDASHNS-INVVRGPVNVELTIL  231 (390)
T ss_dssp             TSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSC-CSEEEC---CSSCSEEECCSSC-CCEEECCCCSSCCEE
T ss_pred             ccCCCCCCEEECCCCcCCccc----cccccccceeeccccc-ccccCC---CCcceEEECCCCe-eeeccccccccccEE
Confidence            344556666666555544332    2345566666665543 222221   1467777776665 3333222 4577788


Q ss_pred             EEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeec
Q 010478          320 KYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVAT  397 (509)
Q Consensus       320 ~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~  397 (509)
                      .+.+..-...-.+..+++|+++++....-   .......+..+++|+.|.++.+. +. .++  ...+++|++|+|..+.
T Consensus       232 ~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~n~-l~-~~~~~~~~l~~L~~L~L~~n~  306 (390)
T 3o6n_A          232 KLQHNNLTDTAWLLNYPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYISNNR-LV-ALNLYGQPIPTLKVLDLSHNH  306 (390)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECCSSCC---CEEESGGGTTCSSCCEEECCSSC-CC-EEECSSSCCTTCCEEECCSSC
T ss_pred             ECCCCCCcccHHHcCCCCccEEECCCCcC---CCcChhHccccccCCEEECCCCc-Cc-ccCcccCCCCCCCEEECCCCc
Confidence            77766521223456678888888776221   11112334567888888887432 21 122  4567888888885543


Q ss_pred             cCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCccccCCccEEEEecc
Q 010478          398 LNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGF  452 (509)
Q Consensus       398 ~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V~i~~f  452 (509)
                      -..     +..-+..+++|+.|++...       .+..++.....+|+.+.+.|-
T Consensus       307 l~~-----~~~~~~~l~~L~~L~L~~N-------~i~~~~~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          307 LLH-----VERNQPQFDRLENLYLDHN-------SIVTLKLSTHHTLKNLTLSHN  349 (390)
T ss_dssp             CCC-----CGGGHHHHTTCSEEECCSS-------CCCCCCCCTTCCCSEEECCSS
T ss_pred             cee-----cCccccccCcCCEEECCCC-------ccceeCchhhccCCEEEcCCC
Confidence            221     2222456788888888762       222333335678888888763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.95  E-value=1e-05  Score=86.09  Aligned_cols=210  Identities=17%  Similarity=0.123  Sum_probs=133.0

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEe---cccccceEEEEecccCccEEE--E-ECC
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVV---GSAIQLKHLRISTCYRLNEIK--I-STP  314 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~---~~~~~Lk~L~l~~c~~l~~l~--i-~aP  314 (509)
                      ...+++|+.|++.+..+....-.   ..+|.|++|++.++.......+.   ..+++|+.|++.+|. +..+.  + ..+
T Consensus       321 ~~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~  396 (570)
T 2z63_A          321 TLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLE  396 (570)
T ss_dssp             BCBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCT
T ss_pred             cccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccC
Confidence            45789999999988765432111   57999999999988633221111   245889999999886 33332  2 478


Q ss_pred             ceeEEEEecCCcc---ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCccc
Q 010478          315 NLLSFKYFGPGQE---LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLT  389 (509)
Q Consensus       315 ~L~~L~~~g~~~~---~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk  389 (509)
                      +|++|.+.+..-.   ....+.++++|+.+++.....   .......+..+++|+.|.+..+.-....+|  +..+++|+
T Consensus       397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~  473 (570)
T 2z63_A          397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT---RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  473 (570)
T ss_dssp             TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC---EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc---cccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence            9999988876410   112456788999998876221   111223456789999999985542223344  77889999


Q ss_pred             EEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC-c--cccCCccEEEEec--ccCCccHHHHH-H
Q 010478          390 HLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP-R--HSHQHLKLVELHG--FLGRPIDLELA-F  463 (509)
Q Consensus       390 ~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p-~--c~~~~Lk~V~i~~--f~g~~~e~~l~-~  463 (509)
                      +|+|..+.-...    ....+..+|+|+.|++...       .+..++ .  ....+|+.+.+.+  +.+......++ .
T Consensus       474 ~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~  542 (570)
T 2z63_A          474 FLDLSQCQLEQL----SPTAFNSLSSLQVLNMASN-------QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR  542 (570)
T ss_dssp             EEECTTSCCCEE----CTTTTTTCTTCCEEECCSS-------CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHH
T ss_pred             EEECCCCccccC----ChhhhhcccCCCEEeCCCC-------cCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHH
Confidence            999954322211    1334667899999999763       112222 1  1357899999987  55655566666 5


Q ss_pred             HHHhc
Q 010478          464 YILEN  468 (509)
Q Consensus       464 ~lL~n  468 (509)
                      ++-++
T Consensus       543 wl~~~  547 (570)
T 2z63_A          543 WLNKN  547 (570)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            55443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.95  E-value=5.6e-06  Score=86.04  Aligned_cols=160  Identities=18%  Similarity=0.177  Sum_probs=77.4

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEE-CCceeEE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKIS-TPNLLSF  319 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~-aP~L~~L  319 (509)
                      +..+++|+.|+|++..+++-.    +..++.|++|.+.++.- +.+.+ ..+++|+.|.+.++..+..+.+. .++|+.|
T Consensus       102 ~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l-~~l~l-~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L  175 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTL-TEIDV-SHNTQLTELDCHLNKKITKLDVTPQTQLTTL  175 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSCC-SCCCC-TTCTTCCEEECTTCSCCCCCCCTTCTTCCEE
T ss_pred             cCCCCcCCEEECCCCcCCeec----CCCCCcCCEEECCCCcc-ceecc-ccCCcCCEEECCCCCcccccccccCCcCCEE
Confidence            345566666666655554421    45566666666665532 22222 22456666666665433333322 4566666


Q ss_pred             EEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccC
Q 010478          320 KYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLN  399 (509)
Q Consensus       320 ~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~  399 (509)
                      .+++..- ..+.+..+++|+.+++....-...     . +..+++|+.|.++.+. + ..+|...+++|++|++..+.-.
T Consensus       176 ~ls~n~l-~~l~l~~l~~L~~L~l~~N~l~~~-----~-l~~l~~L~~L~Ls~N~-l-~~ip~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          176 DCSFNKI-TELDVSQNKLLNRLNCDTNNITKL-----D-LNQNIQLTFLDCSSNK-L-TEIDVTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             ECCSSCC-CCCCCTTCTTCCEEECCSSCCSCC-----C-CTTCTTCSEEECCSSC-C-SCCCCTTCTTCSEEECCSSCCS
T ss_pred             ECCCCcc-ceeccccCCCCCEEECcCCcCCee-----c-cccCCCCCEEECcCCc-c-cccCccccCCCCEEEeeCCcCC
Confidence            6655441 112245556666666554211111     1 2455666666665322 2 1133455666666666443222


Q ss_pred             ccCHHHHHHHhhcCCCCcEEEEE
Q 010478          400 RESLLGLASIMKACPFLQTLIVQ  422 (509)
Q Consensus       400 ~~~~~~l~~lL~~~P~Le~L~i~  422 (509)
                      ...       +..+++|+.|.+.
T Consensus       247 ~~~-------~~~l~~L~~L~l~  262 (457)
T 3bz5_A          247 ELD-------VSTLSKLTTLHCI  262 (457)
T ss_dssp             CCC-------CTTCTTCCEEECT
T ss_pred             CcC-------HHHCCCCCEEecc
Confidence            111       3456666666543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.94  E-value=1.2e-06  Score=94.23  Aligned_cols=24  Identities=8%  Similarity=0.087  Sum_probs=13.5

Q ss_pred             CCccEEEEec--ccCCccHHHHHHHH
Q 010478          442 QHLKLVELHG--FLGRPIDLELAFYI  465 (509)
Q Consensus       442 ~~Lk~V~i~~--f~g~~~e~~l~~~l  465 (509)
                      ++|+.+.+.|  +.+......|+.++
T Consensus       545 ~~L~~l~l~~N~~~c~c~~~~~~~~l  570 (606)
T 3vq2_A          545 KSLAFFNLTNNSVACICEHQKFLQWV  570 (606)
T ss_dssp             TTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred             ccCcEEEccCCCcccCCccHHHHHHH
Confidence            3688888877  33433434444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.93  E-value=4e-06  Score=86.55  Aligned_cols=207  Identities=15%  Similarity=0.136  Sum_probs=109.0

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEEEE----ECC
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEIKI----STP  314 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l~i----~aP  314 (509)
                      +..+++|+.|+|++..+.+-.. ..+.+++.|++|+|.++. ++.+.  .-..+++|+.|++.++. +..+.-    ..|
T Consensus        84 ~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~  160 (440)
T 3zyj_A           84 FKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIP  160 (440)
T ss_dssp             TSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCT
T ss_pred             hhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCc
Confidence            5567777777777665443211 224567778888777763 22111  01234677777777665 333321    246


Q ss_pred             ceeEEEEecCCccce---eeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCccc
Q 010478          315 NLLSFKYFGPGQELK---LHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLT  389 (509)
Q Consensus       315 ~L~~L~~~g~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk  389 (509)
                      +|+.|.+.+...-..   -.+.++++|+.+++.......+    . -+..+++|+.|+|+.+ .+....+  +..+++|+
T Consensus       161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~----~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~  234 (440)
T 3zyj_A          161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI----P-NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQ  234 (440)
T ss_dssp             TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC----C-CCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred             ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc----c-ccCCCcccCEEECCCC-ccCccChhhhccCccCC
Confidence            777777765321011   1245567777777665221111    1 1345677888887743 2222222  56677888


Q ss_pred             EEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc---cccCCccEEEEec--ccCCccHHHHHHH
Q 010478          390 HLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR---HSHQHLKLVELHG--FLGRPIDLELAFY  464 (509)
Q Consensus       390 ~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~---c~~~~Lk~V~i~~--f~g~~~e~~l~~~  464 (509)
                      +|+|..+.-....    ...+..+++|+.|++...       .+..++.   ....+|+.+.+.+  |........+..+
T Consensus       235 ~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~  303 (440)
T 3zyj_A          235 KLWMIQSQIQVIE----RNAFDNLQSLVEINLAHN-------NLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWW  303 (440)
T ss_dssp             EEECTTCCCCEEC----TTSSTTCTTCCEEECTTS-------CCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHH
T ss_pred             EEECCCCceeEEC----hhhhcCCCCCCEEECCCC-------CCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHH
Confidence            8887443222111    223556788888877652       2222221   1346788888876  3343333344444


Q ss_pred             HHh
Q 010478          465 ILE  467 (509)
Q Consensus       465 lL~  467 (509)
                      +-+
T Consensus       304 ~~~  306 (440)
T 3zyj_A          304 IKD  306 (440)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.93  E-value=4.7e-06  Score=76.04  Aligned_cols=150  Identities=13%  Similarity=0.179  Sum_probs=72.0

Q ss_pred             ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEE
Q 010478          242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKY  321 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~  321 (509)
                      ..+++|+.|++++..+.+-.   -+..+++|++|.+.+|. +..+..-..+++|+.|.+.++. +..             
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~-l~~-------------  102 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKD-VTS-------------  102 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT---TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTT-CBG-------------
T ss_pred             hhcCCccEEeccCCCccChH---HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCc-cCc-------------
Confidence            34677777777776665311   25667778888777772 2222111123445555554443 100             


Q ss_pred             ecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCcc
Q 010478          322 FGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRE  401 (509)
Q Consensus       322 ~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~  401 (509)
                           ...-.+..+++|+.+++.......   .....+..+++|+.|.++.+..+...-+...+++|++|++..+.-.. 
T Consensus       103 -----~~~~~l~~l~~L~~L~Ls~n~i~~---~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-  173 (197)
T 4ezg_A          103 -----DKIPNLSGLTSLTLLDISHSAHDD---SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-  173 (197)
T ss_dssp             -----GGSCCCTTCTTCCEEECCSSBCBG---GGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-
T ss_pred             -----ccChhhcCCCCCCEEEecCCccCc---HhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-
Confidence                 011123444555555554411110   01122245667777777654322111115556677777763332111 


Q ss_pred             CHHHHHHHhhcCCCCcEEEEEE
Q 010478          402 SLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       402 ~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                          +. .+..+|+|+.|++..
T Consensus       174 ----~~-~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          174 ----YR-GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             ----CT-TGGGCSSCCEEEECB
T ss_pred             ----hH-HhccCCCCCEEEeeC
Confidence                11 355667777776654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.92  E-value=2.5e-06  Score=82.58  Aligned_cols=205  Identities=13%  Similarity=0.080  Sum_probs=97.7

Q ss_pred             cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEEEE----ECCceeE
Q 010478          245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEIKI----STPNLLS  318 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l~i----~aP~L~~  318 (509)
                      ++|+.|+|++..+++-. ...+..++.|++|+|.++. ++.+.  .-..+++|+.|++.++..+..+..    ..++|++
T Consensus        32 ~~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             TTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCceEEEeeCCcCCccC-HHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            45666666554443211 0123455666666665553 11110  011235566666655542222211    2356666


Q ss_pred             EEEecCCcc--ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEE
Q 010478          319 FKYFGPGQE--LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLR  394 (509)
Q Consensus       319 L~~~g~~~~--~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~  394 (509)
                      |.+.+..-.  .+-.+.++++|+.+++.....   .......+..+++|+.|.++.+. +....+  +..+++|++|++.
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~  185 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNAL---QALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLH  185 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcc---cccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECC
Confidence            666554310  112245566777777665211   11111233566778888877432 211111  4556778888774


Q ss_pred             eeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC---ccccCCccEEEEec--ccCCccHHHHHHHHH
Q 010478          395 VATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP---RHSHQHLKLVELHG--FLGRPIDLELAFYIL  466 (509)
Q Consensus       395 ~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p---~c~~~~Lk~V~i~~--f~g~~~e~~l~~~lL  466 (509)
                      .+.....    ....+..+++|+.|++...       .+..++   -....+|+.+.+.+  +.+......+..++-
T Consensus       186 ~n~l~~~----~~~~~~~l~~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~  251 (285)
T 1ozn_A          186 QNRVAHV----HPHAFRDLGRLMTLYLFAN-------NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ  251 (285)
T ss_dssp             SSCCCEE----CTTTTTTCTTCCEEECCSS-------CCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred             CCccccc----CHhHccCcccccEeeCCCC-------cCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHH
Confidence            4322211    1233456778888777652       112222   11346777777766  334444445555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.91  E-value=3.9e-06  Score=87.29  Aligned_cols=183  Identities=16%  Similarity=0.130  Sum_probs=113.1

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEE-CCceeEE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKIS-TPNLLSF  319 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~-aP~L~~L  319 (509)
                      +..+++|+.|+|++..+++-.    ++.++.|++|++.++. ++.+.+ ..+++|+.|++.++. +..+.+. .++|+.|
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~-l~~~~~-~~l~~L~~L~L~~N~-l~~l~~~~l~~L~~L  132 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNK-LTNLDV-TPLTKLTYLNCDTNK-LTKLDVSQNPLLTYL  132 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSC-CSCCCC-TTCTTCCEEECCSSC-CSCCCCTTCTTCCEE
T ss_pred             hcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCC-Cceeec-CCCCcCCEEECCCCc-CCeecCCCCCcCCEE
Confidence            456788888888887776632    5678888888888875 333333 345788888888775 4444332 5778888


Q ss_pred             EEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccC
Q 010478          320 KYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLN  399 (509)
Q Consensus       320 ~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~  399 (509)
                      .+.+..- ..+.+.++++|+.+++.....  .+..   -+..+++|+.|.++.+. + ..++...+++|++|++..+.-.
T Consensus       133 ~l~~N~l-~~l~l~~l~~L~~L~l~~n~~--~~~~---~~~~l~~L~~L~ls~n~-l-~~l~l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          133 NCARNTL-TEIDVSHNTQLTELDCHLNKK--ITKL---DVTPQTQLTTLDCSFNK-I-TELDVSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             ECTTSCC-SCCCCTTCTTCCEEECTTCSC--CCCC---CCTTCTTCCEEECCSSC-C-CCCCCTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcc-ceeccccCCcCCEEECCCCCc--cccc---ccccCCcCCEEECCCCc-c-ceeccccCCCCCEEECcCCcCC
Confidence            8776652 123466777788777765211  0100   13456788888887432 2 2234566778888888544322


Q ss_pred             ccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCccccCCccEEEEecc
Q 010478          400 RESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGF  452 (509)
Q Consensus       400 ~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V~i~~f  452 (509)
                      ..+       +..+|+|+.|++...       .+..+|-....+|+.+.+.+-
T Consensus       205 ~~~-------l~~l~~L~~L~Ls~N-------~l~~ip~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          205 KLD-------LNQNIQLTFLDCSSN-------KLTEIDVTPLTQLTYFDCSVN  243 (457)
T ss_dssp             CCC-------CTTCTTCSEEECCSS-------CCSCCCCTTCTTCSEEECCSS
T ss_pred             eec-------cccCCCCCEEECcCC-------cccccCccccCCCCEEEeeCC
Confidence            221       567788888887652       222344334677888888763

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.91  E-value=2.1e-06  Score=83.02  Aligned_cols=174  Identities=18%  Similarity=0.150  Sum_probs=109.9

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEEE---E-ECC
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEIK---I-STP  314 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l~---i-~aP  314 (509)
                      +..+++|+.|+|++..+++-. ...+.+++.|++|+|.++..++.+.  .-..+++|+.|.+.++. +..+.   + ..+
T Consensus        52 ~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~  129 (285)
T 1ozn_A           52 FRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLA  129 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred             cccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCc
Confidence            567888999999877654321 1235678899999998886443321  11235788889888875 33221   1 257


Q ss_pred             ceeEEEEecCCc-cce-eeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccE
Q 010478          315 NLLSFKYFGPGQ-ELK-LHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTH  390 (509)
Q Consensus       315 ~L~~L~~~g~~~-~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~  390 (509)
                      +|++|.+.+..- ... -.+.++++|+.+++......   ......+..+++|+.|.++.+. +....+  +..+++|++
T Consensus       130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~  205 (285)
T 1ozn_A          130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS---SVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMT  205 (285)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred             CCCEEECCCCcccccCHhHhccCCCccEEECCCCccc---ccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccE
Confidence            888888887651 111 12567888999988763211   1112234568899999998443 322223  667889999


Q ss_pred             EEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478          391 LHLRVATLNRESLLGLASIMKACPFLQTLIVQFD  424 (509)
Q Consensus       391 L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~  424 (509)
                      |+|..+.-...    ....+..+++|+.|++...
T Consensus       206 L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          206 LYLFANNLSAL----PTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             EECCSSCCSCC----CHHHHTTCTTCCEEECCSS
T ss_pred             eeCCCCcCCcC----CHHHcccCcccCEEeccCC
Confidence            99955433222    1345678999999998764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.91  E-value=7.8e-06  Score=85.15  Aligned_cols=175  Identities=19%  Similarity=0.119  Sum_probs=106.8

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE-EEecccccceEEEEecccCccEEEE---ECCce
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRISTCYRLNEIKI---STPNL  316 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~c~~l~~l~i---~aP~L  316 (509)
                      +..+++|+.|+|.+..+++-. ...+.+++.|+.|+|.++...... ..-..+++|+.|++.+|..+..+..   ..++|
T Consensus       148 ~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  226 (477)
T 2id5_A          148 FSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL  226 (477)
T ss_dssp             STTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred             ccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence            567889999999887766432 234678899999999887532110 0112357889999988875554432   23478


Q ss_pred             eEEEEecCCc-cce-eeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEE
Q 010478          317 LSFKYFGPGQ-ELK-LHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLH  392 (509)
Q Consensus       317 ~~L~~~g~~~-~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~  392 (509)
                      ++|.+.++.- ..+ ..+.++++|+.+++....-   .......+..+++|+.|.|..+. +....+  +..+++|++|+
T Consensus       227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  302 (477)
T 2id5_A          227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI---STIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLN  302 (477)
T ss_dssp             SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC---CEECTTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEE
T ss_pred             cEEECcCCcccccCHHHhcCccccCeeECCCCcC---CccChhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEE
Confidence            8888887651 111 2356778888888876221   11112334667888888887432 222222  56778888888


Q ss_pred             EEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478          393 LRVATLNRESLLGLASIMKACPFLQTLIVQFD  424 (509)
Q Consensus       393 L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~  424 (509)
                      |..+.-....    ...+..+++|+.|++...
T Consensus       303 L~~N~l~~~~----~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          303 VSGNQLTTLE----ESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             CCSSCCSCCC----GGGBSCGGGCCEEECCSS
T ss_pred             CCCCcCceeC----HhHcCCCcccCEEEccCC
Confidence            8544222211    234566788888887653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.90  E-value=1.8e-06  Score=89.18  Aligned_cols=103  Identities=17%  Similarity=0.158  Sum_probs=42.5

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEEEE----ECC
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEIKI----STP  314 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l~i----~aP  314 (509)
                      +.++++|+.|+|++..++.-. ...+.+++.|++|+|.++.- +.+.  .-..+++|+.|++.++..+..+..    ..+
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~  185 (440)
T 3zyj_A          108 FNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS  185 (440)
T ss_dssp             GTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred             ccCCccCCEEECCCCcCCeeC-HhHhhccccCceeeCCCCcc-cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence            344555666665554443210 11234455555555555431 1110  001234555555555443333321    134


Q ss_pred             ceeEEEEecCCccceeeecCCCCceEEEEEe
Q 010478          315 NLLSFKYFGPGQELKLHIENAPQLVDISFRG  345 (509)
Q Consensus       315 ~L~~L~~~g~~~~~~~~~~~~~~L~~l~i~~  345 (509)
                      +|++|.+.++.-..--.+..+++|+.+++..
T Consensus       186 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~  216 (440)
T 3zyj_A          186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSG  216 (440)
T ss_dssp             SCCEEECTTSCCSSCCCCTTCSSCCEEECTT
T ss_pred             ccCeecCCCCcCccccccCCCcccCEEECCC
Confidence            5555555444310101233444455554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.90  E-value=9.3e-06  Score=79.93  Aligned_cols=212  Identities=14%  Similarity=0.091  Sum_probs=133.5

Q ss_pred             ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEE
Q 010478          242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKY  321 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~  321 (509)
                      ..+++|+.|+|++..+++-. ...+..++.|+.|+|+++.-.....+ ..+++|+.|++.++. +..+. ..|+|++|.+
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l  106 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLDL-ESLSTLRTLDLNNNY-VQELL-VGPSIETLHA  106 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCCEEEEEE-TTCTTCCEEECCSSE-EEEEE-ECTTCCEEEC
T ss_pred             ccCCCCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcCCcchhh-hhcCCCCEEECcCCc-ccccc-CCCCcCEEEC
Confidence            35689999999988776532 23468899999999999875443343 456899999999886 55555 3589999999


Q ss_pred             ecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC---CCCCCcccEEEEEeecc
Q 010478          322 FGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS---EHELPNLTHLHLRVATL  398 (509)
Q Consensus       322 ~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~---~~~f~~Lk~L~L~~~~~  398 (509)
                      .+..- ..+.....++|+.+++....-..   .....+..+++|+.|.++.+. +....+   ...+++|++|++..+.-
T Consensus       107 ~~n~l-~~~~~~~~~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          107 ANNNI-SRVSCSRGQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             CSSCC-SEEEECCCSSCEEEECCSSCCCS---GGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             CCCcc-CCcCccccCCCCEEECCCCCCCC---ccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcC
Confidence            88762 23445567889999887632211   112233567899999998432 211111   24578999999954432


Q ss_pred             CccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc--cccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEE
Q 010478          399 NRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR--HSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMV  476 (509)
Q Consensus       399 ~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~--c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~  476 (509)
                      ...     . -...+++|+.|++...       .+..++.  ....+|+.+.+.+-.-..     +..-+...+.|+.+.
T Consensus       182 ~~~-----~-~~~~l~~L~~L~Ls~N-------~l~~l~~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~l~~L~~L~  243 (317)
T 3o53_A          182 YDV-----K-GQVVFAKLKTLDLSSN-------KLAFMGPEFQSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFD  243 (317)
T ss_dssp             CEE-----E-CCCCCTTCCEEECCSS-------CCCEECGGGGGGTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEE
T ss_pred             ccc-----c-cccccccCCEEECCCC-------cCCcchhhhcccCcccEEECcCCcccc-----hhhHhhcCCCCCEEE
Confidence            211     1 1123789999988763       1222221  135678888876632221     011235667888887


Q ss_pred             EEec
Q 010478          477 VNRT  480 (509)
Q Consensus       477 I~~~  480 (509)
                      +...
T Consensus       244 l~~N  247 (317)
T 3o53_A          244 LRGN  247 (317)
T ss_dssp             CTTC
T ss_pred             ccCC
Confidence            7644

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.88  E-value=1.7e-06  Score=89.67  Aligned_cols=164  Identities=14%  Similarity=0.116  Sum_probs=83.0

Q ss_pred             ceeEEEEecCCc------cceeeecCCCCceEEEEEeccch--hhhhhhcccccCCCCccEEEEeechhhh---hccC--
Q 010478          315 NLLSFKYFGPGQ------ELKLHIENAPQLVDISFRGVMLT--RVRNVVGPITSCFPQLKTLELDSCDELY---AQFS--  381 (509)
Q Consensus       315 ~L~~L~~~g~~~------~~~~~~~~~~~L~~l~i~~~~~~--~~~~~~~~l~~~l~~L~~L~L~~~~~~~---~~~~--  381 (509)
                      +|++|.+.++.-      ...-.+..+++|+++++....-.  ........+....++|++|.++.+.--.   ..++  
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            455665555431      01224567888888888763211  1122222333446678888887542111   1112  


Q ss_pred             CCCCCcccEEEEEeeccCccCHHHHHHHhh-cCCCCcEEEEEEeecCCccCCccccCcc--ccCCccEEEEecccCCccH
Q 010478          382 EHELPNLTHLHLRVATLNRESLLGLASIMK-ACPFLQTLIVQFDYNGYKVGRRRKVPRH--SHQHLKLVELHGFLGRPID  458 (509)
Q Consensus       382 ~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~-~~P~Le~L~i~~~~~~~~~~~~~~~p~c--~~~~Lk~V~i~~f~g~~~e  458 (509)
                      +..+++|++|++..+.........+...+. ..++|+.|++....-..  .....++..  ...+|+.+.+.+..-....
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~--~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS--DNCRDLCGIVASKASLRELALGSNKLGDVG  243 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT--THHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH--HHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence            445678888888544221112222322222 45688888886531000  000011111  3578888888765322211


Q ss_pred             -HHHHHHHHhcCccCCcEEEEec
Q 010478          459 -LELAFYILENAMTLEKMVVNRT  480 (509)
Q Consensus       459 -~~l~~~lL~na~~Le~m~I~~~  480 (509)
                       ..+...+..+.+.|+.+.+...
T Consensus       244 ~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          244 MAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCCceEEECcCC
Confidence             2233445456788998888644

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.88  E-value=4.7e-06  Score=86.35  Aligned_cols=207  Identities=14%  Similarity=0.114  Sum_probs=114.5

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEEEE----ECC
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEIKI----STP  314 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l~i----~aP  314 (509)
                      +..+++|+.|+|++..+.+-. ...+.+++.|++|+|.++.- +.+.  .-..+++|+.|.+.++. +..+.-    ..|
T Consensus        95 ~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~  171 (452)
T 3zyi_A           95 FRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVP  171 (452)
T ss_dssp             TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-SBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCT
T ss_pred             cCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcC-CccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCC
Confidence            567788888888776554321 12345678888888887642 2111  01234678888887765 443322    247


Q ss_pred             ceeEEEEecCCcccee---eecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCccc
Q 010478          315 NLLSFKYFGPGQELKL---HIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLT  389 (509)
Q Consensus       315 ~L~~L~~~g~~~~~~~---~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk  389 (509)
                      +|+.|.+.+...-..+   .+.++++|+.+++........     .-+..+++|+.|+|+.+. +....+  +..+++|+
T Consensus       172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~  245 (452)
T 3zyi_A          172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-----PNLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLK  245 (452)
T ss_dssp             TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-----CCCTTCTTCCEEECTTSC-CSEECGGGGTTCTTCC
T ss_pred             cccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-----ccccccccccEEECcCCc-CcccCcccccCccCCC
Confidence            7777777763311111   245677777777765221111     113466788888887332 222222  56677888


Q ss_pred             EEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc---cccCCccEEEEec--ccCCccHHHHHHH
Q 010478          390 HLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR---HSHQHLKLVELHG--FLGRPIDLELAFY  464 (509)
Q Consensus       390 ~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~---c~~~~Lk~V~i~~--f~g~~~e~~l~~~  464 (509)
                      +|+|..+......    ...+..+++|+.|++...       .+..++.   ....+|+.+.+.+  +........+..+
T Consensus       246 ~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~  314 (452)
T 3zyi_A          246 KLWVMNSQVSLIE----RNAFDGLASLVELNLAHN-------NLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWW  314 (452)
T ss_dssp             EEECTTSCCCEEC----TTTTTTCTTCCEEECCSS-------CCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHH
T ss_pred             EEEeCCCcCceEC----HHHhcCCCCCCEEECCCC-------cCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHH
Confidence            8888443222111    223567788888888653       2222221   1356788888877  3344443444444


Q ss_pred             HHh
Q 010478          465 ILE  467 (509)
Q Consensus       465 lL~  467 (509)
                      +-+
T Consensus       315 l~~  317 (452)
T 3zyi_A          315 LRE  317 (452)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.85  E-value=7.2e-06  Score=85.97  Aligned_cols=188  Identities=14%  Similarity=0.137  Sum_probs=121.6

Q ss_pred             ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEE
Q 010478          242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKY  321 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~  321 (509)
                      ..+++|+.|+|++..+++-. ...+..++.|+.|+|+++.-..... -..+++|+.|++.++. +..+.. .|+|++|.+
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~-~~~L~~L~L  106 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV-GPSIETLHA  106 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCC-GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE-CTTCCEEEC
T ss_pred             ccCCCccEEEeeCCcCCCCC-HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC-CCCcCEEEC
Confidence            45679999999998876521 1235789999999999987443333 3456899999999886 565553 489999999


Q ss_pred             ecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC---CCCCCcccEEEEEeecc
Q 010478          322 FGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS---EHELPNLTHLHLRVATL  398 (509)
Q Consensus       322 ~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~---~~~f~~Lk~L~L~~~~~  398 (509)
                      +++.- ..+.....++|+.+++......   ......+..+++|+.|+|+.+. +....+   ...+++|++|+|..+..
T Consensus       107 ~~N~l-~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          107 ANNNI-SRVSCSRGQGKKNIYLANNKIT---MLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CSSCC-CCEEECCCSSCEEEECCSSCCC---SGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             cCCcC-CCCCccccCCCCEEECCCCCCC---CCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCcc
Confidence            88762 2334456788999988763221   1122234567899999998432 222222   23678999999955432


Q ss_pred             CccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc--cccCCccEEEEec
Q 010478          399 NRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR--HSHQHLKLVELHG  451 (509)
Q Consensus       399 ~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~--c~~~~Lk~V~i~~  451 (509)
                      ...     .. ...+|+|+.|++...       .+..+|.  ....+|+.+.+.+
T Consensus       182 ~~~-----~~-~~~l~~L~~L~Ls~N-------~l~~~~~~~~~l~~L~~L~Ls~  223 (487)
T 3oja_A          182 YDV-----KG-QVVFAKLKTLDLSSN-------KLAFMGPEFQSAAGVTWISLRN  223 (487)
T ss_dssp             CEE-----EC-CCCCTTCCEEECCSS-------CCCEECGGGGGGTTCSEEECTT
T ss_pred             ccc-----cc-cccCCCCCEEECCCC-------CCCCCCHhHcCCCCccEEEecC
Confidence            211     11 124889999998763       1122221  1345677777655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.84  E-value=1.6e-05  Score=74.64  Aligned_cols=189  Identities=15%  Similarity=0.124  Sum_probs=99.9

Q ss_pred             cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEEE---E-ECCceeE
Q 010478          245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEIK---I-STPNLLS  318 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l~---i-~aP~L~~  318 (509)
                      ++|+.|+|++..++.-. ...+.+++.|+.|++.++..++.+.  .-..+++|+.|++.+|..+..+.   + ..++|++
T Consensus        31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            36777777766544211 0124567777777777765333221  11234677777777655455443   1 3567777


Q ss_pred             EEEecCCc-cceeeecCCCCce---EEEEEec-cchhhhhhhcccccCCCCcc-EEEEeechhhhhccC--CCCCCcccE
Q 010478          319 FKYFGPGQ-ELKLHIENAPQLV---DISFRGV-MLTRVRNVVGPITSCFPQLK-TLELDSCDELYAQFS--EHELPNLTH  390 (509)
Q Consensus       319 L~~~g~~~-~~~~~~~~~~~L~---~l~i~~~-~~~~~~~~~~~l~~~l~~L~-~L~L~~~~~~~~~~~--~~~f~~Lk~  390 (509)
                      |.+.+..- ..+ .+..+++|+   .+++... .-   .......+..+++|+ .|.++.+. +. .++  ....++|++
T Consensus       110 L~l~~n~l~~lp-~~~~l~~L~~L~~L~l~~N~~l---~~i~~~~~~~l~~L~~~L~l~~n~-l~-~i~~~~~~~~~L~~  183 (239)
T 2xwt_C          110 LGIFNTGLKMFP-DLTKVYSTDIFFILEITDNPYM---TSIPVNAFQGLCNETLTLKLYNNG-FT-SVQGYAFNGTKLDA  183 (239)
T ss_dssp             EEEEEECCCSCC-CCTTCCBCCSEEEEEEESCTTC---CEECTTTTTTTBSSEEEEECCSCC-CC-EECTTTTTTCEEEE
T ss_pred             EeCCCCCCcccc-ccccccccccccEEECCCCcch---hhcCcccccchhcceeEEEcCCCC-Cc-ccCHhhcCCCCCCE
Confidence            77766541 111 145556666   6666652 11   111122345677888 88886332 21 222  112267888


Q ss_pred             EEEEeec-cCccCHHHHHHHhhcC-CCCcEEEEEEeecCCccCCccccCccccCCccEEEEec
Q 010478          391 LHLRVAT-LNRESLLGLASIMKAC-PFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHG  451 (509)
Q Consensus       391 L~L~~~~-~~~~~~~~l~~lL~~~-P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V~i~~  451 (509)
                      |+|..+. -....    ...+..+ ++|+.|++..       ..+..+|...+.+|+.+.+.+
T Consensus       184 L~L~~n~~l~~i~----~~~~~~l~~~L~~L~l~~-------N~l~~l~~~~~~~L~~L~l~~  235 (239)
T 2xwt_C          184 VYLNKNKYLTVID----KDAFGGVYSGPSLLDVSQ-------TSVTALPSKGLEHLKELIARN  235 (239)
T ss_dssp             EECTTCTTCCEEC----TTTTTTCSBCCSEEECTT-------CCCCCCCCTTCTTCSEEECTT
T ss_pred             EEcCCCCCcccCC----HHHhhccccCCcEEECCC-------CccccCChhHhccCceeeccC
Confidence            8884431 11111    1234566 8888888755       223344444567787777654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.82  E-value=3.2e-05  Score=81.88  Aligned_cols=180  Identities=12%  Similarity=0.092  Sum_probs=114.7

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccccee--eEEEecccccceEEEEecccCccEEEE----ECC
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLV--SLKVVGSAIQLKHLRISTCYRLNEIKI----STP  314 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~--~l~i~~~~~~Lk~L~l~~c~~l~~l~i----~aP  314 (509)
                      +..+++|++|+|++..+.+.. ...+.+++.|++|++.++.-..  ....-..+++|+.|++.++..+..+..    ..+
T Consensus        70 ~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           70 FYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             ccccccCCEEECCCCccCccC-HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence            567899999999988776532 2346789999999999885321  111223467899999998875554431    257


Q ss_pred             ceeEEEEecCCc--cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhh---ccC-CCCCCcc
Q 010478          315 NLLSFKYFGPGQ--ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYA---QFS-EHELPNL  388 (509)
Q Consensus       315 ~L~~L~~~g~~~--~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~---~~~-~~~f~~L  388 (509)
                      +|+.|.+.+..-  ..+-.+..+++|+.+++.........   ..+...+++|+.|.++.+.-...   ..+ ...+++|
T Consensus       149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L  225 (549)
T 2z81_A          149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL---EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM  225 (549)
T ss_dssp             EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHH---HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCC
T ss_pred             ccCeeeccCCcccccChhhhhccccCceEecccCcccccc---hhhHhhcccccEEEccCCccccccccccchhhhhhcc
Confidence            899998887651  12234566778888888763322111   12335688999999985431111   111 3457889


Q ss_pred             cEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478          389 THLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD  424 (509)
Q Consensus       389 k~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~  424 (509)
                      ++|++............+...+..+++|+.|.+...
T Consensus       226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~  261 (549)
T 2z81_A          226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC  261 (549)
T ss_dssp             CEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred             cceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence            999986553333333445666677888888887654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.80  E-value=8.1e-06  Score=80.28  Aligned_cols=40  Identities=20%  Similarity=0.232  Sum_probs=19.6

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccc
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSE  281 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~  281 (509)
                      +..+++|+.|+|++..+++. +...+..++.|++|+|.++.
T Consensus        97 l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~  136 (313)
T 1ogq_A           97 IAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNA  136 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSE
T ss_pred             HhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCc
Confidence            34555666666655544321 11123455666666665553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.79  E-value=1.1e-05  Score=71.88  Aligned_cols=41  Identities=0%  Similarity=0.094  Sum_probs=35.7

Q ss_pred             CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceee
Q 010478          244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVS  285 (509)
Q Consensus       244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~  285 (509)
                      -..|+.|+|+++.++++.+..+ ++|+.|++|+|.+|..+++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD  100 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIED  100 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCH
T ss_pred             CceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCH
Confidence            3579999999999999998775 7999999999999987664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.79  E-value=1.8e-05  Score=82.40  Aligned_cols=36  Identities=14%  Similarity=0.246  Sum_probs=20.2

Q ss_pred             cCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEEEec
Q 010478          441 HQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRT  480 (509)
Q Consensus       441 ~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~  480 (509)
                      ..+|+.+.+.+-.-..    +....+.+.+.|+.+.+...
T Consensus       295 l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          295 LNYLRVLNVSGNQLTT----LEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             CTTCCEEECCSSCCSC----CCGGGBSCGGGCCEEECCSS
T ss_pred             cccCCEEECCCCcCce----eCHhHcCCCcccCEEEccCC
Confidence            4678888887632111    11123455678888877643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.77  E-value=2.7e-05  Score=82.39  Aligned_cols=223  Identities=16%  Similarity=0.137  Sum_probs=118.6

Q ss_pred             cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEEE---E-ECCceeE
Q 010478          245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEIK---I-STPNLLS  318 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l~---i-~aP~L~~  318 (509)
                      ++|++|+|++..+++.. ...+.+++.|++|+++++.- +.+.  .-..+++|++|++.++. +..+.   + ..++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKY  102 (549)
T ss_dssp             TTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCE
T ss_pred             CCccEEECcCCccCccC-hhhhhcCCcccEEECCCCCc-CccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcE
Confidence            56666666665544211 01235566677777666632 1111  01234566666666654 22211   1 2466777


Q ss_pred             EEEecCCc---cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEE
Q 010478          319 FKYFGPGQ---ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHL  393 (509)
Q Consensus       319 L~~~g~~~---~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L  393 (509)
                      |.+++..-   ..+-.+.++++|+.+++.....  .+......+..+++|++|.+..+. +....+  +..+++|++|++
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~--~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l  179 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET--FSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTL  179 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS--CCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEE
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCcc--ccccCHhhhhcccccCeeeccCCc-ccccChhhhhccccCceEec
Confidence            77766541   1123467788888888876320  111111234668889999998443 322233  667888999998


Q ss_pred             EeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCC-ccCCccccCccccCCccEEEEecccCCccHHHHHHHHHhcCccC
Q 010478          394 RVATLNRESLLGLASIMKACPFLQTLIVQFDYNGY-KVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTL  472 (509)
Q Consensus       394 ~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~-~~~~~~~~p~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~L  472 (509)
                      ......  ..  -..++..+++|+.|++....-.. .... ... .-...+|+.+.+.+..-......-+...+.+.+.|
T Consensus       180 ~~n~~~--~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L  253 (549)
T 2z81_A          180 HLSESA--FL--LEIFADILSSVRYLELRDTNLARFQFSP-LPV-DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL  253 (549)
T ss_dssp             ECSBST--TH--HHHHHHSTTTBSEEEEESCBCTTCCCCC-CSS-CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred             ccCccc--cc--chhhHhhcccccEEEccCCccccccccc-cch-hhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence            554321  11  23345678999999997742110 0000 000 11356788888776543333333333445566777


Q ss_pred             CcEEEEe
Q 010478          473 EKMVVNR  479 (509)
Q Consensus       473 e~m~I~~  479 (509)
                      +.+.+..
T Consensus       254 ~~l~l~~  260 (549)
T 2z81_A          254 SEVEFDD  260 (549)
T ss_dssp             CEEEEES
T ss_pred             ccccccc
Confidence            7776653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.77  E-value=9.9e-06  Score=72.29  Aligned_cols=67  Identities=15%  Similarity=0.250  Sum_probs=53.4

Q ss_pred             CccCcCCcEEEEeeEE-EChhhHHHHHhC---CccccceeeecccceeeEEE--ecccccceEEEEecccCcc
Q 010478          241 LSGVKYLRSLRLFSVN-VTGEILEFILHN---CPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCYRLN  307 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~-~~~~~l~~lls~---CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~~l~  307 (509)
                      ..++++|++|+|++|. ++|+.+..+...   |+.||+|+|++|..+++--+  -..+++|++|++.+|+.+.
T Consensus        81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A           81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred             hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            4579999999999995 999999988863   89999999999987763211  1346888888888887544

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.76  E-value=1e-05  Score=78.08  Aligned_cols=36  Identities=28%  Similarity=0.663  Sum_probs=33.7

Q ss_pred             ccCCCCcHHHHHHHHcCCChhhHH-HHHhhhhhhhhh
Q 010478          112 DLMSLLPDDILINIISRLPLKEAA-KTSVLSSRWKYL  147 (509)
Q Consensus       112 D~is~LPdeiL~~ILs~Lp~~d~~-rts~lSrRWr~l  147 (509)
                      ..+..||||||.+||++||.++++ |++.|||+|+++
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            358899999999999999999999 999999999985

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.75  E-value=1.3e-05  Score=78.35  Aligned_cols=218  Identities=14%  Similarity=0.058  Sum_probs=131.2

Q ss_pred             cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEe---cccccceEEEEecccCccEEE---EECCce
Q 010478          243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVV---GSAIQLKHLRISTCYRLNEIK---ISTPNL  316 (509)
Q Consensus       243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~---~~~~~Lk~L~l~~c~~l~~l~---i~aP~L  316 (509)
                      -.++|+.|+|++..+++- -..++.+++.|+.|+|.++.-...-.+.   ..+++|+.|++.++. +..+.   ...++|
T Consensus        26 ~~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L  103 (306)
T 2z66_A           26 IPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL  103 (306)
T ss_dssp             CCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred             CCCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCC
Confidence            347899999998876531 1234678999999999988532111111   235899999999886 44332   247899


Q ss_pred             eEEEEecCCc-cce--eeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEE
Q 010478          317 LSFKYFGPGQ-ELK--LHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHL  391 (509)
Q Consensus       317 ~~L~~~g~~~-~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L  391 (509)
                      ++|.+.+..- ...  -.+..+++|+.+++.....   .......+..+++|+.|.++.+.-.....+  +..+++|++|
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  180 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT---RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  180 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC---EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCcC---CccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence            9999887641 011  2456788899988876221   112223456789999999984432121334  6788999999


Q ss_pred             EEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC---ccccCCccEEEEecccCCccHHHHHHHHHhc
Q 010478          392 HLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP---RHSHQHLKLVELHGFLGRPIDLELAFYILEN  468 (509)
Q Consensus       392 ~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p---~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~n  468 (509)
                      ++..+.-...    ....+..+|+|+.|++...       .+..++   -....+|+.+.+.+-.-.....    ..+.+
T Consensus       181 ~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~  245 (306)
T 2z66_A          181 DLSQCQLEQL----SPTAFNSLSSLQVLNMSHN-------NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK----QELQH  245 (306)
T ss_dssp             ECTTSCCCEE----CTTTTTTCTTCCEEECTTS-------CCSBCCSGGGTTCTTCCEEECTTSCCCBCSS----SSCCC
T ss_pred             ECCCCCcCCc----CHHHhcCCCCCCEEECCCC-------ccCccChhhccCcccCCEeECCCCCCcccCH----HHHHh
Confidence            9954422211    1234567899999998653       111111   1235678888887633211100    01223


Q ss_pred             C-ccCCcEEEEec
Q 010478          469 A-MTLEKMVVNRT  480 (509)
Q Consensus       469 a-~~Le~m~I~~~  480 (509)
                      . +.|+.+.+...
T Consensus       246 ~~~~L~~L~L~~N  258 (306)
T 2z66_A          246 FPSSLAFLNLTQN  258 (306)
T ss_dssp             CCTTCCEEECTTC
T ss_pred             hhccCCEEEccCC
Confidence            3 47777777543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.74  E-value=1.7e-05  Score=85.35  Aligned_cols=184  Identities=20%  Similarity=0.185  Sum_probs=96.4

Q ss_pred             ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEE-CCceeEEE
Q 010478          242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKIS-TPNLLSFK  320 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~-aP~L~~L~  320 (509)
                      ..+++|+.|+|++..+++-.    +..+|.|+.|++.++. +..+.+   ..+|+.|++.++. +..+... .++|+.|.
T Consensus       168 ~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~-l~~l~~---~~~L~~L~ls~n~-l~~~~~~~~~~L~~L~  238 (597)
T 3oja_B          168 QATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNL-LSTLAI---PIAVEELDASHNS-INVVRGPVNVELTILK  238 (597)
T ss_dssp             TTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSC-CSEEEC---CTTCSEEECCSSC-CCEEECSCCSCCCEEE
T ss_pred             hcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCc-cccccC---CchhheeeccCCc-ccccccccCCCCCEEE
Confidence            34455555555544443322    2334555555555442 122211   1456666666654 3333221 35677777


Q ss_pred             EecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeecc
Q 010478          321 YFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATL  398 (509)
Q Consensus       321 ~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~  398 (509)
                      +.++.-.....+..+++|+.+++.....   .......+..+++|+.|.|+.+. + ..++  ...+++|++|+|..+..
T Consensus       239 L~~n~l~~~~~l~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~Ls~N~-l-~~l~~~~~~l~~L~~L~Ls~N~l  313 (597)
T 3oja_B          239 LQHNNLTDTAWLLNYPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYISNNR-L-VALNLYGQPIPTLKVLDLSHNHL  313 (597)
T ss_dssp             CCSSCCCCCGGGGGCTTCSEEECCSSCC---CEEESGGGTTCSSCCEEECTTSC-C-CEEECSSSCCTTCCEEECCSSCC
T ss_pred             CCCCCCCCChhhccCCCCCEEECCCCcc---CCCCHHHhcCccCCCEEECCCCC-C-CCCCcccccCCCCcEEECCCCCC
Confidence            7766522223456777888888776221   11112334567888888887432 2 1122  45578888888855432


Q ss_pred             CccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCccccCCccEEEEec
Q 010478          399 NRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHG  451 (509)
Q Consensus       399 ~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V~i~~  451 (509)
                      ..     +..-+..+|+|+.|++...       .+..++.....+|+.+.+.|
T Consensus       314 ~~-----i~~~~~~l~~L~~L~L~~N-------~l~~~~~~~~~~L~~L~l~~  354 (597)
T 3oja_B          314 LH-----VERNQPQFDRLENLYLDHN-------SIVTLKLSTHHTLKNLTLSH  354 (597)
T ss_dssp             CC-----CGGGHHHHTTCSEEECCSS-------CCCCCCCCTTCCCSEEECCS
T ss_pred             Cc-----cCcccccCCCCCEEECCCC-------CCCCcChhhcCCCCEEEeeC
Confidence            21     2223456788888887663       12222333455677777665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.73  E-value=1e-06  Score=97.69  Aligned_cols=217  Identities=15%  Similarity=0.193  Sum_probs=118.1

Q ss_pred             ccCcCCcEEEEeeEEEChhhHH--HHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE-E-ECCcee
Q 010478          242 SGVKYLRSLRLFSVNVTGEILE--FILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK-I-STPNLL  317 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~l~--~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~-i-~aP~L~  317 (509)
                      ..+++|++|+|++..+++....  ..+.+|+.|++|++.++...+...+ ..+++|+.|++.+|.....+. + ..++|+
T Consensus       148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~  226 (768)
T 3rgz_A          148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQ  226 (768)
T ss_dssp             CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCC
T ss_pred             ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCCCcccccCCCCC
Confidence            4677888888887766554322  2367788888888887753322222 445788888887775321111 1 356777


Q ss_pred             EEEEecCCc--cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC---CCCCCcccEEE
Q 010478          318 SFKYFGPGQ--ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS---EHELPNLTHLH  392 (509)
Q Consensus       318 ~L~~~g~~~--~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~---~~~f~~Lk~L~  392 (509)
                      +|.+.++.-  ..+-.+.++++|+.+++......  + ....  ..+++|++|.+..+. +...+|   ...+++|++|+
T Consensus       227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~--~-~~~~--~~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~  300 (768)
T 3rgz_A          227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFV--G-PIPP--LPLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLD  300 (768)
T ss_dssp             EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCE--E-SCCC--CCCTTCCEEECCSSE-EEESCCCCSCTTCTTCSEEE
T ss_pred             EEECcCCcCCCcccHHHhcCCCCCEEECCCCccc--C-ccCc--cccCCCCEEECcCCc-cCCccCHHHHhhcCcCCEEE
Confidence            777776651  12334566777777777652111  0 0111  156778888877432 222233   22347888888


Q ss_pred             EEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCcc-ccC---ccccCCccEEEEecccCCccHHHHHHHHHhc
Q 010478          393 LRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRR-KVP---RHSHQHLKLVELHGFLGRPIDLELAFYILEN  468 (509)
Q Consensus       393 L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~-~~p---~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~n  468 (509)
                      |..+....    .+...+..+++|+.|++....       .. .+|   -....+|+++.+.+..-...   +-..+...
T Consensus       301 Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~-------l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~---~p~~l~~l  366 (768)
T 3rgz_A          301 LSGNHFYG----AVPPFFGSCSLLESLALSSNN-------FSGELPMDTLLKMRGLKVLDLSFNEFSGE---LPESLTNL  366 (768)
T ss_dssp             CCSSEEEE----CCCGGGGGCTTCCEEECCSSE-------EEEECCHHHHTTCTTCCEEECCSSEEEEC---CCTTHHHH
T ss_pred             CcCCcCCC----ccchHHhcCCCccEEECCCCc-------ccCcCCHHHHhcCCCCCEEeCcCCccCcc---ccHHHHhh
Confidence            84432111    123346678888888876531       11 122   12356788888866321100   00011122


Q ss_pred             CccCCcEEEEe
Q 010478          469 AMTLEKMVVNR  479 (509)
Q Consensus       469 a~~Le~m~I~~  479 (509)
                      .+.|+.+.+..
T Consensus       367 ~~~L~~L~Ls~  377 (768)
T 3rgz_A          367 SASLLTLDLSS  377 (768)
T ss_dssp             TTTCSEEECCS
T ss_pred             hcCCcEEEccC
Confidence            24788887764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.71  E-value=1.9e-06  Score=92.64  Aligned_cols=28  Identities=11%  Similarity=0.070  Sum_probs=17.7

Q ss_pred             cCCccEEEEec--ccCCccHHHHHHHHHhc
Q 010478          441 HQHLKLVELHG--FLGRPIDLELAFYILEN  468 (509)
Q Consensus       441 ~~~Lk~V~i~~--f~g~~~e~~l~~~lL~n  468 (509)
                      ..+|+.+.+.|  +.+......|+.++-++
T Consensus       546 l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~  575 (606)
T 3t6q_A          546 LSQQRTINLRQNPLDCTCSNIYFLEWYKEN  575 (606)
T ss_dssp             HHTSSEEECTTCCEECSGGGHHHHHHHHHC
T ss_pred             CCCCCEEeCCCCCccccCCcHHHHHHHHhC
Confidence            45677777766  44555556666666554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.70  E-value=5e-06  Score=81.72  Aligned_cols=40  Identities=23%  Similarity=0.138  Sum_probs=23.3

Q ss_pred             ccCcCCcEEEEeeEEEChh--hHHHHHhC-Cccccceeeeccc
Q 010478          242 SGVKYLRSLRLFSVNVTGE--ILEFILHN-CPLLDQLSVVRSE  281 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~--~l~~lls~-CP~Le~L~L~~c~  281 (509)
                      ..+++|+.|+|++..+++.  .+..+... .+.|++|+|.++.
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~  160 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH  160 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC
Confidence            4567777777777666543  23332211 3677777777664

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.68  E-value=9.2e-06  Score=77.57  Aligned_cols=33  Identities=21%  Similarity=0.380  Sum_probs=32.0

Q ss_pred             CCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhh
Q 010478          114 MSLLPDDILINIISRLPLKEAAKTSVLSSRWKY  146 (509)
Q Consensus       114 is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~  146 (509)
                      |++||+||+.+|||||+.+|+++.+.|||+||.
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~   37 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE   37 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999996

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.67  E-value=7.2e-06  Score=82.37  Aligned_cols=140  Identities=16%  Similarity=0.198  Sum_probs=73.8

Q ss_pred             CCceEEEEEeccch-hhhhhhcccccCCC-CccEEEEeechhhhh---ccC--CCCC-CcccEEEEEeeccCccCHHHHH
Q 010478          336 PQLVDISFRGVMLT-RVRNVVGPITSCFP-QLKTLELDSCDELYA---QFS--EHEL-PNLTHLHLRVATLNRESLLGLA  407 (509)
Q Consensus       336 ~~L~~l~i~~~~~~-~~~~~~~~l~~~l~-~L~~L~L~~~~~~~~---~~~--~~~f-~~Lk~L~L~~~~~~~~~~~~l~  407 (509)
                      .+|+++++....-. .....+...+..++ +|++|.|+.+.--..   .+.  ...+ ++|++|+|..+.-.......+.
T Consensus       138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~  217 (362)
T 3goz_A          138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA  217 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH
Confidence            35666666542111 00112223334454 899999985431111   111  3345 5999999966544445555577


Q ss_pred             HHhhc-CCCCcEEEEEEeecCC-ccCCccccCccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEE
Q 010478          408 SIMKA-CPFLQTLIVQFDYNGY-KVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMV  476 (509)
Q Consensus       408 ~lL~~-~P~Le~L~i~~~~~~~-~~~~~~~~p~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~  476 (509)
                      ..+.. .++|+.|++....-.. ....+... .....+|+.+.+.+..-..-.-+.+..+.+..+.++.++
T Consensus       218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~  287 (362)
T 3goz_A          218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLL-KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII  287 (362)
T ss_dssp             HHHHHSCTTCCEEECCSSCCCCCCHHHHHHT-TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred             HHHhcCCCCceEEECcCCCCCcHHHHHHHHH-HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence            77766 5699999997741100 00000000 123577999999886511112244455555556666655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.67  E-value=0.00012  Score=76.95  Aligned_cols=151  Identities=13%  Similarity=0.098  Sum_probs=79.6

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhC--CccccceeeecccceeeE--EEe----ccccc------------------
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHN--CPLLDQLSVVRSETLVSL--KVV----GSAIQ------------------  294 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~--CP~Le~L~L~~c~~~~~l--~i~----~~~~~------------------  294 (509)
                      +..+++|+.|+|.+..+.+..+..+...  ++.|++|++.+|.-.+.+  .+.    ..+++                  
T Consensus       216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~  295 (520)
T 2z7x_B          216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI  295 (520)
T ss_dssp             GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHH
T ss_pred             hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhh
Confidence            4678899999999999888766555542  678999999887522111  000    12233                  


Q ss_pred             --------ceEEEEecccCccEEE--EECCceeEEEEecCCcc--ceeeecCCCCceEEEEEeccchhhhhhhcccccCC
Q 010478          295 --------LKHLRISTCYRLNEIK--ISTPNLLSFKYFGPGQE--LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCF  362 (509)
Q Consensus       295 --------Lk~L~l~~c~~l~~l~--i~aP~L~~L~~~g~~~~--~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l  362 (509)
                              |+.|.+.++. +..+.  -..++|++|.+++..-.  .+..+..+++|+.+++....-..... +...+..+
T Consensus       296 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~l  373 (520)
T 2z7x_B          296 YEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK-IAEMTTQM  373 (520)
T ss_dssp             HHHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH-HHHHHTTC
T ss_pred             hcccccCceeEEEcCCCc-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc-chHHHhhC
Confidence                    4444444443 11111  13567777777665411  12334567777777776522111111 11223456


Q ss_pred             CCccEEEEeechhhhhccC---CCCCCcccEEEEE
Q 010478          363 PQLKTLELDSCDELYAQFS---EHELPNLTHLHLR  394 (509)
Q Consensus       363 ~~L~~L~L~~~~~~~~~~~---~~~f~~Lk~L~L~  394 (509)
                      ++|+.|+++.+. +...++   +..+++|++|++.
T Consensus       374 ~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls  407 (520)
T 2z7x_B          374 KSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMS  407 (520)
T ss_dssp             TTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECC
T ss_pred             CCCCEEECCCCc-CCcccccchhccCccCCEEECc
Confidence            677777776322 111122   3344555666553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.66  E-value=7.2e-06  Score=78.86  Aligned_cols=36  Identities=17%  Similarity=0.052  Sum_probs=17.8

Q ss_pred             ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecc
Q 010478          242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRS  280 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c  280 (509)
                      ..+++|+.|+|++..+.+-.   -+..++.|+.|++.++
T Consensus        60 ~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHDIS---ALKELTNLTYLILTGN   95 (272)
T ss_dssp             GGCTTCCEEECTTSCCCCCG---GGTTCTTCCEEECTTS
T ss_pred             ccCCCCcEEECCCCCCCCch---hhcCCCCCCEEECCCC
Confidence            34555555555554444311   2344555555555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.64  E-value=6.1e-06  Score=88.65  Aligned_cols=97  Identities=18%  Similarity=0.206  Sum_probs=43.2

Q ss_pred             cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE------EECCce
Q 010478          243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK------ISTPNL  316 (509)
Q Consensus       243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~------i~aP~L  316 (509)
                      .+++|++|++.+..+.+  +..+  .++.|++|++.++.......+. .+++|+.|++.++. +..+.      ...++|
T Consensus       305 ~~~~L~~L~l~~n~l~~--lp~~--~l~~L~~L~l~~n~~~~~~~~~-~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L  378 (606)
T 3vq2_A          305 KHFKWQSLSIIRCQLKQ--FPTL--DLPFLKSLTLTMNKGSISFKKV-ALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSL  378 (606)
T ss_dssp             TTCCCSEEEEESCCCSS--CCCC--CCSSCCEEEEESCSSCEECCCC-CCTTCCEEECCSSC-EEEEEECCHHHHCCSCC
T ss_pred             ccccCCEEEcccccCcc--cccC--CCCccceeeccCCcCccchhhc-cCCCCCEEECcCCc-cCCCcchhhhhccCCcc
Confidence            34455555555554421  1111  4555555555555433322221 23555555555543 22221      123556


Q ss_pred             eEEEEecCCc-cceeeecCCCCceEEEEEe
Q 010478          317 LSFKYFGPGQ-ELKLHIENAPQLVDISFRG  345 (509)
Q Consensus       317 ~~L~~~g~~~-~~~~~~~~~~~L~~l~i~~  345 (509)
                      ++|.+.++.- ..+-.+.++++|+.+++..
T Consensus       379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~  408 (606)
T 3vq2_A          379 RHLDLSFNGAIIMSANFMGLEELQHLDFQH  408 (606)
T ss_dssp             CEEECCSCSEEEECCCCTTCTTCCEEECTT
T ss_pred             cEeECCCCccccchhhccCCCCCCeeECCC
Confidence            6665555431 0112344555566655544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.63  E-value=7.5e-06  Score=87.93  Aligned_cols=222  Identities=14%  Similarity=0.059  Sum_probs=134.0

Q ss_pred             CCccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE---EecccccceEEEEecccCccEEEE----E
Q 010478          240 ELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK---VVGSAIQLKHLRISTCYRLNEIKI----S  312 (509)
Q Consensus       240 ~~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~---i~~~~~~Lk~L~l~~c~~l~~l~i----~  312 (509)
                      .+..+++|+.|+|.+..+....-...+..++.|++|++.++.......   .-..+++|+.|.+.++. +..+..    .
T Consensus       320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~  398 (606)
T 3t6q_A          320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKE  398 (606)
T ss_dssp             CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTT
T ss_pred             hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcC
Confidence            456789999999998765432222235689999999999986432211   11345899999999886 333321    3


Q ss_pred             CCceeEEEEecCCcc---ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC----CCCC
Q 010478          313 TPNLLSFKYFGPGQE---LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS----EHEL  385 (509)
Q Consensus       313 aP~L~~L~~~g~~~~---~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~----~~~f  385 (509)
                      .|+|+.|.+.+..-.   ....+.++++|+.+++.....   .......+..+++|+.|.++.+.-....++    +..+
T Consensus       399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l  475 (606)
T 3t6q_A          399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL---DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL  475 (606)
T ss_dssp             CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC---BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred             CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc---CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC
Confidence            588999998876511   112367789999999876321   112224456789999999985432111121    6678


Q ss_pred             CcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCcccc-Cc--cccCCccEEEEecccCCccHHHHH
Q 010478          386 PNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKV-PR--HSHQHLKLVELHGFLGRPIDLELA  462 (509)
Q Consensus       386 ~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~-p~--c~~~~Lk~V~i~~f~g~~~e~~l~  462 (509)
                      ++|++|+|..+.-...    ....+..+++|+.|++...       .+... |+  ...++| .+.+.+-.-..    +.
T Consensus       476 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N-------~l~~~~~~~l~~l~~L-~L~L~~N~l~~----~~  539 (606)
T 3t6q_A          476 GRLEILVLSFCDLSSI----DQHAFTSLKMMNHVDLSHN-------RLTSSSIEALSHLKGI-YLNLASNHISI----IL  539 (606)
T ss_dssp             TTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSS-------CCCGGGGGGGTTCCSC-EEECCSSCCCC----CC
T ss_pred             CCccEEECCCCccCcc----ChhhhccccCCCEEECCCC-------ccCcCChhHhCccccc-EEECcCCcccc----cC
Confidence            9999999954422211    1234678899999999763       11111 11  123455 55555422111    11


Q ss_pred             HHHHhcCccCCcEEEEecC
Q 010478          463 FYILENAMTLEKMVVNRTN  481 (509)
Q Consensus       463 ~~lL~na~~Le~m~I~~~~  481 (509)
                      ...+.+.+.|+.+.+....
T Consensus       540 ~~~~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          540 PSLLPILSQQRTINLRQNP  558 (606)
T ss_dssp             GGGHHHHHTSSEEECTTCC
T ss_pred             HhhcccCCCCCEEeCCCCC
Confidence            1123445888888876443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.63  E-value=7.7e-06  Score=84.48  Aligned_cols=108  Identities=18%  Similarity=0.189  Sum_probs=59.7

Q ss_pred             ccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCcccc
Q 010478          359 TSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKV  436 (509)
Q Consensus       359 ~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~  436 (509)
                      +..+++|+.|+++.+. +....+  +..+++|++|+|..+.-...    ....+..+++|+.|++...       .+...
T Consensus       295 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N-------~l~~~  362 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSI----DSRMFENLDKLEVLDLSYN-------HIRAL  362 (455)
T ss_dssp             TTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEE----CGGGGTTCTTCCEEECCSS-------CCCEE
T ss_pred             cccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCc----ChhHhcCcccCCEEECCCC-------ccccc
Confidence            4556777777776332 212222  55667788888744322211    1234567788888877653       11111


Q ss_pred             -Cc--cccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEEEecCC
Q 010478          437 -PR--HSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRTNY  482 (509)
Q Consensus       437 -p~--c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~~~  482 (509)
                       |.  ....+|+++.+.+-.-..    +....+++.+.|+.+.+....-
T Consensus       363 ~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          363 GDQSFLGLPNLKELALDTNQLKS----VPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSC----CCTTTTTTCTTCCEEECCSSCB
T ss_pred             ChhhccccccccEEECCCCcccc----CCHhHhccCCcccEEEccCCCc
Confidence             11  235788888887632211    1111346778999988876543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.61  E-value=0.00012  Score=81.89  Aligned_cols=227  Identities=15%  Similarity=0.095  Sum_probs=110.0

Q ss_pred             CccCcCCcEEEEeeEEECh---hhHHHHHhCCccccceeeecccceeeE--EEec-----ccccceEEEEeccc------
Q 010478          241 LSGVKYLRSLRLFSVNVTG---EILEFILHNCPLLDQLSVVRSETLVSL--KVVG-----SAIQLKHLRISTCY------  304 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~---~~l~~lls~CP~Le~L~L~~c~~~~~l--~i~~-----~~~~Lk~L~l~~c~------  304 (509)
                      +..+++|+.|+|++..+.+   +++..+-.  +.|+.|.+.++......  .+..     ...+|+.|++.++.      
T Consensus       144 ~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  221 (844)
T 3j0a_A          144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT  221 (844)
T ss_dssp             GGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTT
T ss_pred             HhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHH
Confidence            4567888888888766543   34444322  66777777766422211  0100     00137777776652      


Q ss_pred             ----------CccEEEEE-------------------------CCceeEEEEecCCc--cceeeecCCCCceEEEEEecc
Q 010478          305 ----------RLNEIKIS-------------------------TPNLLSFKYFGPGQ--ELKLHIENAPQLVDISFRGVM  347 (509)
Q Consensus       305 ----------~l~~l~i~-------------------------aP~L~~L~~~g~~~--~~~~~~~~~~~L~~l~i~~~~  347 (509)
                                .+..+.+.                         .++|+.|.+++..-  ..+..+..+++|+.+++....
T Consensus       222 ~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  301 (844)
T 3j0a_A          222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK  301 (844)
T ss_dssp             SGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC
T ss_pred             HHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc
Confidence                      11222221                         25677777665541  012235567777777776522


Q ss_pred             chhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEee
Q 010478          348 LTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDY  425 (509)
Q Consensus       348 ~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~  425 (509)
                      -.   ......+..+++|+.|.|+.+. +....+  +..+++|++|++..+.-....    ...+..+++|+.|++....
T Consensus       302 i~---~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          302 IN---KIADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKNHIAIIQ----DQTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             CC---EECTTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEECCSCCCCCCC----SSCSCSCCCCCEEEEETCC
T ss_pred             CC---CCChHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEECCCCCCCccC----hhhhcCCCCCCEEECCCCC
Confidence            11   1111233566777777776432 212222  555667777777443221111    1124556777777776531


Q ss_pred             cC-Cc-----------cCCccccCccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEEEecC
Q 010478          426 NG-YK-----------VGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRTN  481 (509)
Q Consensus       426 ~~-~~-----------~~~~~~~p~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~~  481 (509)
                      -. .+           .+.+..+|. ...+++.+.+.+-.-..  +. ..+.+.+.+.|+.+.+....
T Consensus       374 l~~i~~~~~L~~L~l~~N~l~~l~~-~~~~l~~L~ls~N~l~~--l~-~~~~~~~l~~L~~L~Ls~N~  437 (844)
T 3j0a_A          374 LTTIHFIPSIPDIFLSGNKLVTLPK-INLTANLIHLSENRLEN--LD-ILYFLLRVPHLQILILNQNR  437 (844)
T ss_dssp             SCCCSSCCSCSEEEEESCCCCCCCC-CCTTCCEEECCSCCCCS--ST-THHHHTTCTTCCEEEEESCC
T ss_pred             CCcccCCCCcchhccCCCCcccccc-cccccceeecccCcccc--Cc-hhhhhhcCCccceeeCCCCc
Confidence            00 00           011222222 13445555554422111  01 12345678899998888654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.60  E-value=2e-05  Score=76.67  Aligned_cols=147  Identities=19%  Similarity=0.180  Sum_probs=81.6

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFK  320 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~  320 (509)
                      +..+++|+.|+|++..+++-.-   +++++.|+.|.+.++.- +.+.--..+++|+.|++.++. +..+           
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n~-i~~~-----------  127 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLEHNG-ISDI-----------  127 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEECTTSC-CCCC-----------
T ss_pred             HhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcC-CCChhhccCCCCCEEECCCCc-CCCC-----------
Confidence            4556777777777766654221   66777777777777642 111111233566666665554 2211           


Q ss_pred             EecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCc
Q 010478          321 YFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNR  400 (509)
Q Consensus       321 ~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~  400 (509)
                               -.+..+++|+.+++....-...     ..+..+++|+.|.++.+. +....+...+++|++|++..+.-..
T Consensus       128 ---------~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          128 ---------NGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             ---------GGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCB
T ss_pred             ---------hhhcCCCCCCEEEccCCcCCcc-----hhhccCCCCCEEEccCCc-cccchhhcCCCccCEEECCCCcCCC
Confidence                     1234455566665554211111     223567788888887432 2122225677888888885443222


Q ss_pred             cCHHHHHHHhhcCCCCcEEEEEEe
Q 010478          401 ESLLGLASIMKACPFLQTLIVQFD  424 (509)
Q Consensus       401 ~~~~~l~~lL~~~P~Le~L~i~~~  424 (509)
                           +. -+..+++|+.|++...
T Consensus       193 -----l~-~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          193 -----LR-ALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             -----CG-GGTTCTTCSEEEEEEE
T ss_pred             -----Ch-hhccCCCCCEEECcCC
Confidence                 11 2677888888888775

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.58  E-value=1.2e-05  Score=80.73  Aligned_cols=68  Identities=19%  Similarity=0.237  Sum_probs=39.5

Q ss_pred             ccccCC-CCccEEEEeechhhh---hccC--CCC-CCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478          357 PITSCF-PQLKTLELDSCDELY---AQFS--EHE-LPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD  424 (509)
Q Consensus       357 ~l~~~l-~~L~~L~L~~~~~~~---~~~~--~~~-f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~  424 (509)
                      ..+..+ ++|++|+|+.+.--.   ..++  ... .++|++|+|..+.-.......+..+++.+++|+.|++...
T Consensus       189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence            344455 378888877432100   1111  222 3578888886654444555566777777888888887764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.57  E-value=2.8e-05  Score=78.72  Aligned_cols=143  Identities=14%  Similarity=0.162  Sum_probs=71.2

Q ss_pred             cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEEE----EECCce
Q 010478          243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEIK----ISTPNL  316 (509)
Q Consensus       243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l~----i~aP~L  316 (509)
                      .+++|+.|++.+..++.-. ..++.+++.|+.|+|.++.- +.+.  .-..+++|+.|++.++. +..+.    -..++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~-~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GGCCCSEEEEESCEESEEC-THHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred             ccCCceEEEecCCchhhCC-hhHhcccccCcEEECCCCcc-cccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCC
Confidence            4577777777776654311 12345677777777777642 2211  01234677777777665 22221    124566


Q ss_pred             eEEEEecCCc-ccee-eecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEE
Q 010478          317 LSFKYFGPGQ-ELKL-HIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHL  393 (509)
Q Consensus       317 ~~L~~~g~~~-~~~~-~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L  393 (509)
                      ++|.+.+..- ..+. .+.++++|+.+++....-   .......+..+++|+.|.++.+. + ...+...+++|++|++
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~l~~n~-l-~~~~~~~l~~L~~L~l  193 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL---ERIEDDTFQATTSLQNLQLSSNR-L-THVDLSLIPSLFHANV  193 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---CBCCTTTTSSCTTCCEEECCSSC-C-SBCCGGGCTTCSEEEC
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc---CccChhhccCCCCCCEEECCCCc-C-Cccccccccccceeec
Confidence            6666665541 0111 134566666666654211   11111223456667777666322 1 1112344555566555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.56  E-value=1.3e-05  Score=86.18  Aligned_cols=80  Identities=19%  Similarity=0.131  Sum_probs=45.8

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE--EECCceeE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK--ISTPNLLS  318 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~--i~aP~L~~  318 (509)
                      +..+++|+.|+|++..+.+-.-   +..++.|+.|.|.+|.- ..+.--..+++|+.|.+.++. +..+.  ...|+|+.
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~  135 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLES  135 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCC-CCCTTSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSE
T ss_pred             HccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCC-CCChhhccCCCCCEEEecCCC-CCCCccccCCCccCE
Confidence            4567888888888776654321   67788888888887742 222111234667777776665 22211  02345555


Q ss_pred             EEEecCC
Q 010478          319 FKYFGPG  325 (509)
Q Consensus       319 L~~~g~~  325 (509)
                      |.++++.
T Consensus       136 L~Ls~N~  142 (605)
T 1m9s_A          136 LYLGNNK  142 (605)
T ss_dssp             EECCSSC
T ss_pred             EECCCCc
Confidence            5554443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.55  E-value=3.8e-05  Score=72.06  Aligned_cols=169  Identities=11%  Similarity=0.037  Sum_probs=95.5

Q ss_pred             CccCcCCcEEEEeeEE-EChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEecccCccEEE--EECCc
Q 010478          241 LSGVKYLRSLRLFSVN-VTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCYRLNEIK--ISTPN  315 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~-~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~~l~~l~--i~aP~  315 (509)
                      +..+++|+.|+|++.. ++.-. ...+.+++.|++|++.+|..++.+..  -..+++|+.|.+.++. +..+.  -..++
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~  128 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYS  128 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCCCTTCCB
T ss_pred             ccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccccccccc
Confidence            5577888888888664 33210 11246788889998888665554321  1235788888888775 22221  12455


Q ss_pred             ee---EEEEecC-C-ccc-eeeecCCCCce-EEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCC-
Q 010478          316 LL---SFKYFGP-G-QEL-KLHIENAPQLV-DISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHEL-  385 (509)
Q Consensus       316 L~---~L~~~g~-~-~~~-~~~~~~~~~L~-~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f-  385 (509)
                      |+   .|.+.+. . ... .-.+.++++|+ .+++....-..+.   ...+.. ++|+.|.+..+..+....+  +..+ 
T Consensus       129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~---~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~  204 (239)
T 2xwt_C          129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ---GYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVY  204 (239)
T ss_dssp             CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC---TTTTTT-CEEEEEECTTCTTCCEECTTTTTTCS
T ss_pred             cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC---HhhcCC-CCCCEEEcCCCCCcccCCHHHhhccc
Confidence            65   8888776 3 111 11256677888 8877652211111   112223 6788888875533322212  4556 


Q ss_pred             CcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEE
Q 010478          386 PNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQ  422 (509)
Q Consensus       386 ~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~  422 (509)
                      ++|++|+|..+.-.....       ..+++|+.|.+.
T Consensus       205 ~~L~~L~l~~N~l~~l~~-------~~~~~L~~L~l~  234 (239)
T 2xwt_C          205 SGPSLLDVSQTSVTALPS-------KGLEHLKELIAR  234 (239)
T ss_dssp             BCCSEEECTTCCCCCCCC-------TTCTTCSEEECT
T ss_pred             cCCcEEECCCCccccCCh-------hHhccCceeecc
Confidence            789999885432221111       156788888764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.54  E-value=0.00012  Score=82.04  Aligned_cols=208  Identities=13%  Similarity=0.050  Sum_probs=110.0

Q ss_pred             CCccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEE--------
Q 010478          240 ELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKI--------  311 (509)
Q Consensus       240 ~~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i--------  311 (509)
                      .+..+++|+.|+|++..+..-. ...+.+++.|+.|+|+++.-. .  +. .+++|+.|.+.++. +..+.-        
T Consensus       333 ~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~-~--i~-~~~~L~~L~l~~N~-l~~l~~~~~~l~~L  406 (844)
T 3j0a_A          333 NFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALT-T--IH-FIPSIPDIFLSGNK-LVTLPKINLTANLI  406 (844)
T ss_dssp             SCSSCTTCCEEECCSCCCCCCC-SSCSCSCCCCCEEEEETCCSC-C--CS-SCCSCSEEEEESCC-CCCCCCCCTTCCEE
T ss_pred             HhcCCCCCCEEECCCCCCCccC-hhhhcCCCCCCEEECCCCCCC-c--cc-CCCCcchhccCCCC-ccccccccccccee
Confidence            3567788888888876654321 112466888888888877421 1  11 13566666666554 121111        


Q ss_pred             -----------------ECCceeEEEEecCCcc---ceeeecCCCCceEEEEEeccchhh--hhhhcccccCCCCccEEE
Q 010478          312 -----------------STPNLLSFKYFGPGQE---LKLHIENAPQLVDISFRGVMLTRV--RNVVGPITSCFPQLKTLE  369 (509)
Q Consensus       312 -----------------~aP~L~~L~~~g~~~~---~~~~~~~~~~L~~l~i~~~~~~~~--~~~~~~l~~~l~~L~~L~  369 (509)
                                       ..|+|+.|.+++..-.   ....+...++|+.+++........  .......+.++++|+.|+
T Consensus       407 ~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~  486 (844)
T 3j0a_A          407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY  486 (844)
T ss_dssp             ECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCC
T ss_pred             ecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEE
Confidence                             3466677766655410   011233456677766665221100  011123345667788777


Q ss_pred             EeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCccccCCccEE
Q 010478          370 LDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLV  447 (509)
Q Consensus       370 L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V  447 (509)
                      |+.+ .+....+  +..+++|++|+|..+.-......    .+  .++|+.|+++..       .+...+.-.+.+|+.+
T Consensus       487 Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~~--~~~L~~L~Ls~N-------~l~~~~~~~~~~L~~l  552 (844)
T 3j0a_A          487 LNHN-YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN----DL--PANLEILDISRN-------QLLAPNPDVFVSLSVL  552 (844)
T ss_dssp             CCHH-HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCC----CC--CSCCCEEEEEEE-------CCCCCCSCCCSSCCEE
T ss_pred             CCCC-cccccChhHccchhhhheeECCCCCCCccChh----hh--hccccEEECCCC-------cCCCCChhHhCCcCEE
Confidence            7743 3322222  56778888888865533211110    11  178888888774       2222222335688999


Q ss_pred             EEec--ccCCccHHHHHHHHHh
Q 010478          448 ELHG--FLGRPIDLELAFYILE  467 (509)
Q Consensus       448 ~i~~--f~g~~~e~~l~~~lL~  467 (509)
                      .+.|  +.+...-..|+.++-.
T Consensus       553 ~l~~Np~~C~c~~~~f~~~~~~  574 (844)
T 3j0a_A          553 DITHNKFICECELSTFINWLNH  574 (844)
T ss_dssp             EEEEECCCCSSSCCSHHHHHHH
T ss_pred             EecCCCcccccccHHHHHHHHh
Confidence            9987  4443333345555433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.52  E-value=2.1e-05  Score=87.23  Aligned_cols=38  Identities=16%  Similarity=0.023  Sum_probs=21.8

Q ss_pred             ccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEEEec
Q 010478          440 SHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRT  480 (509)
Q Consensus       440 ~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~  480 (509)
                      ...+|+++.+.+..-.. +  +-...+.+.+.|+.+.+...
T Consensus       316 ~l~~L~~L~L~~n~l~~-~--ip~~~l~~l~~L~~L~Ls~n  353 (768)
T 3rgz_A          316 SCSLLESLALSSNNFSG-E--LPMDTLLKMRGLKVLDLSFN  353 (768)
T ss_dssp             GCTTCCEEECCSSEEEE-E--CCHHHHTTCTTCCEEECCSS
T ss_pred             cCCCccEEECCCCcccC-c--CCHHHHhcCCCCCEEeCcCC
Confidence            35678888876532110 0  11123567788998887643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.50  E-value=0.00012  Score=70.92  Aligned_cols=191  Identities=24%  Similarity=0.196  Sum_probs=100.7

Q ss_pred             CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEEec
Q 010478          244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFG  323 (509)
Q Consensus       244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~g  323 (509)
                      .++|+.|+|++..++.-. ...+.+++.|+.|.|.++. ++.+.....+++|+.|++.++. +..               
T Consensus        30 ~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~---------------   91 (290)
T 1p9a_G           30 PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ-LQS---------------   91 (290)
T ss_dssp             CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC-CSS---------------
T ss_pred             CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCc-CCc---------------
Confidence            356777777766554321 1224566777777777654 2222222334555555555443 111               


Q ss_pred             CCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCcc
Q 010478          324 PGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRE  401 (509)
Q Consensus       324 ~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~  401 (509)
                          .+..+..+++|+.+++....-   .......+..+++|+.|.|+.+ .+....+  +..+++|++|+|..+.-...
T Consensus        92 ----l~~~~~~l~~L~~L~l~~N~l---~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           92 ----LPLLGQTLPALTVLDVSFNRL---TSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             ----CCCCTTTCTTCCEEECCSSCC---CCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             ----CchhhccCCCCCEEECCCCcC---cccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCcc
Confidence                122234556666666654211   1111133456788888888743 2212111  45677888888844322211


Q ss_pred             CHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCcc--ccCCccEEEEec--ccCCccHHHHHHHHHhcCcc
Q 010478          402 SLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRH--SHQHLKLVELHG--FLGRPIDLELAFYILENAMT  471 (509)
Q Consensus       402 ~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c--~~~~Lk~V~i~~--f~g~~~e~~l~~~lL~na~~  471 (509)
                      .    ..++...++|+.|++...       .+..+|..  ...+|+.+.+.|  +........+..++-++...
T Consensus       164 ~----~~~~~~l~~L~~L~L~~N-------~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~~~  226 (290)
T 1p9a_G          164 P----AGLLNGLENLDTLLLQEN-------SLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAEN  226 (290)
T ss_dssp             C----TTTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTGGG
T ss_pred             C----HHHhcCcCCCCEEECCCC-------cCCccChhhcccccCCeEEeCCCCccCcCccHHHHHHHHhCccc
Confidence            1    234567788888888652       22333322  234688888876  33344445666666665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.48  E-value=6e-06  Score=81.02  Aligned_cols=109  Identities=17%  Similarity=0.069  Sum_probs=59.6

Q ss_pred             cceEEEEeecCCCChhhHHHHHHHHhccCcEEEEEEecCCCcceeeecccccccccCC--ccCcCCcEEEEeeEEEChhh
Q 010478          184 INKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFLENCYNNLKSEL--SGVKYLRSLRLFSVNVTGEI  261 (509)
Q Consensus       184 l~~l~l~~~~~~~~~~~~~~wl~~a~~~~v~~L~L~~~~~~~~~~~p~~~~~~L~~~~--~~~p~Lk~L~L~~v~~~~~~  261 (509)
                      ++.+.+.-  .......+..........++++|++....-..  ..|.        .+  ..+++|++|+|++..+++..
T Consensus        66 l~~l~l~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~--------~~~~~~~~~L~~L~Ls~n~i~~~~  133 (310)
T 4glp_A           66 VRRLTVGA--AQVPAQLLVGALRVLAYSRLKELTLEDLKITG--TMPP--------LPLEATGLALSSLRLRNVSWATGR  133 (310)
T ss_dssp             CCEEEECS--CCCBHHHHHHHHHHHHHSCCCEEEEESCCCBS--CCCC--------CSSSCCCBCCSSCEEESCCCSSTT
T ss_pred             eeEEEEeC--CcCCHHHHHHHHHhcccCceeEEEeeCCEecc--chhh--------hhhhccCCCCCEEEeecccccchh
Confidence            55555432  12233445555555555678888887543110  1111        12  56788999999888877521


Q ss_pred             --HH-HHHhCCccccceeeecccceeeE-EEecccccceEEEEeccc
Q 010478          262 --LE-FILHNCPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRISTCY  304 (509)
Q Consensus       262 --l~-~lls~CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~c~  304 (509)
                        +. .-+..++.|++|+|.++.-.... ..-..+++|+.|++.++.
T Consensus       134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  180 (310)
T 4glp_A          134 SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP  180 (310)
T ss_dssp             SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred             hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence              21 22347888888888887532111 011123567777766654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.47  E-value=2.6e-05  Score=83.88  Aligned_cols=100  Identities=15%  Similarity=0.118  Sum_probs=48.9

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEE--ECCceeE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKI--STPNLLS  318 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i--~aP~L~~  318 (509)
                      +..+++|+.|+|++..+.+-.   -+..++.|+.|+|.++.-. .+.--..+++|+.|.+.+|. +..+..  ..++|+.
T Consensus        83 l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~  157 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDT  157 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCCCT---TSTTCTTCCEEECTTSCCC-CCGGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSE
T ss_pred             hccCCCCCEEECcCCCCCCCh---hhccCCCCCEEEecCCCCC-CCccccCCCccCEEECCCCc-cCCchhhcccCCCCE
Confidence            345666777777666554421   2456677777777666421 11111234666667666654 222210  2355555


Q ss_pred             EEEecCCccceeeecCCCCceEEEEEe
Q 010478          319 FKYFGPGQELKLHIENAPQLVDISFRG  345 (509)
Q Consensus       319 L~~~g~~~~~~~~~~~~~~L~~l~i~~  345 (509)
                      |.++++.-.....+..+++|+.+++..
T Consensus       158 L~Ls~N~l~~~~~l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          158 LSLEDNQISDIVPLAGLTKLQNLYLSK  184 (605)
T ss_dssp             EECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             EECcCCcCCCchhhccCCCCCEEECcC
Confidence            555554311111144455555555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.47  E-value=6.7e-05  Score=81.23  Aligned_cols=174  Identities=9%  Similarity=0.059  Sum_probs=98.2

Q ss_pred             CccCcCCcEEEEeeEE-EChhh----HHHH--HhCCccccceeeecccceeeEE---EecccccceEEEEecccCccEEE
Q 010478          241 LSGVKYLRSLRLFSVN-VTGEI----LEFI--LHNCPLLDQLSVVRSETLVSLK---VVGSAIQLKHLRISTCYRLNEIK  310 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~-~~~~~----l~~l--ls~CP~Le~L~L~~c~~~~~l~---i~~~~~~Lk~L~l~~c~~l~~l~  310 (509)
                      +..+++|+.|+|++.. +++..    +..+  +..++.|+.|++.++.-. .+.   .-..+++|+.|.+.++.....+.
T Consensus       269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred             HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence            5678899999998887 76622    3332  234688999999887533 221   11245788888888776211332


Q ss_pred             --EECCceeEEEEecCCc-cceeeecCCCC-ceEEEEEeccchhhhhhhcccccC--CCCccEEEEeechhhhhccC--C
Q 010478          311 --ISTPNLLSFKYFGPGQ-ELKLHIENAPQ-LVDISFRGVMLTRVRNVVGPITSC--FPQLKTLELDSCDELYAQFS--E  382 (509)
Q Consensus       311 --i~aP~L~~L~~~g~~~-~~~~~~~~~~~-L~~l~i~~~~~~~~~~~~~~l~~~--l~~L~~L~L~~~~~~~~~~~--~  382 (509)
                        -..++|+.|.+.+..- ..+-.+.++++ |+.+++.......    +...+..  +++|+.|.++.+. +....|  +
T Consensus       348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~----lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l  422 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY----IPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNF  422 (636)
T ss_dssp             CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS----CCSCCCTTCSSCEEEEECCSSC-TTTTTTCSS
T ss_pred             hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc----cchhhhhcccCccCEEECcCCc-CCCcchhhh
Confidence              1346788887776641 11223455666 8888877622111    1112222  3478888887432 212222  2


Q ss_pred             C-------CCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478          383 H-------ELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD  424 (509)
Q Consensus       383 ~-------~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~  424 (509)
                      +       ..++|++|+|..+.-...    -..+++.+++|+.|++...
T Consensus       423 ~~~~~~~~~~~~L~~L~Ls~N~l~~l----p~~~~~~l~~L~~L~Ls~N  467 (636)
T 4eco_A          423 DPLDPTPFKGINVSSINLSNNQISKF----PKELFSTGSPLSSINLMGN  467 (636)
T ss_dssp             CTTCSSCCCCCCEEEEECCSSCCCSC----CTHHHHTTCCCSEEECCSS
T ss_pred             cccccccccCCCCCEEECcCCccCcC----CHHHHccCCCCCEEECCCC
Confidence            2       455788888854432211    1235566788888887653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.46  E-value=4.1e-05  Score=74.40  Aligned_cols=125  Identities=20%  Similarity=0.217  Sum_probs=74.1

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFK  320 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~  320 (509)
                      +..+++|+.|+|++..+++-  .. +..++.|+.|++.++.- +.+.--..+++|+.|.+.++. +..+.          
T Consensus        86 l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n~i-~~~~~l~~l~~L~~L~l~~n~-l~~~~----------  150 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNK-ITDIT----------  150 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEECTTSCC-CCCGGGGGCTTCCEEECCSSC-CCCCG----------
T ss_pred             cccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEECCCCcC-CCChhhcCCCCCCEEEccCCc-CCcch----------
Confidence            56789999999998887652  22 78899999999999853 222111234677788777765 22211          


Q ss_pred             EecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC-CCCCCcccEEEEEeec
Q 010478          321 YFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS-EHELPNLTHLHLRVAT  397 (509)
Q Consensus       321 ~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~-~~~f~~Lk~L~L~~~~  397 (509)
                                .+..+++|+.+++....-....    . +..+++|+.|.++.+. + ..++ ...+++|+.|++..+.
T Consensus       151 ----------~l~~l~~L~~L~L~~N~l~~~~----~-l~~l~~L~~L~L~~N~-i-~~l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          151 ----------VLSRLTKLDTLSLEDNQISDIV----P-LAGLTKLQNLYLSKNH-I-SDLRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             ----------GGGGCTTCSEEECCSSCCCCCG----G-GTTCTTCCEEECCSSC-C-CBCGGGTTCTTCSEEEEEEEE
T ss_pred             ----------hhccCCCCCEEEccCCccccch----h-hcCCCccCEEECCCCc-C-CCChhhccCCCCCEEECcCCc
Confidence                      1334455555555442111111    1 3566777777776432 2 1122 5667778888876553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.44  E-value=9.4e-06  Score=79.60  Aligned_cols=62  Identities=16%  Similarity=0.199  Sum_probs=41.5

Q ss_pred             cCcCCcEEEEeeEEEChhhHHHHHh--CCccccceeeecccceeeE--EEe-cccccceEEEEeccc
Q 010478          243 GVKYLRSLRLFSVNVTGEILEFILH--NCPLLDQLSVVRSETLVSL--KVV-GSAIQLKHLRISTCY  304 (509)
Q Consensus       243 ~~p~Lk~L~L~~v~~~~~~l~~lls--~CP~Le~L~L~~c~~~~~l--~i~-~~~~~Lk~L~l~~c~  304 (509)
                      ....++.|.+..+.+++..+..+..  .++.|++|++.++...+..  .+. ..+++|+.|++.++.
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~  128 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS  128 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc
Confidence            3456788889888888876665544  3567999999988633211  111 345778888888765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.41  E-value=2e-05  Score=84.67  Aligned_cols=208  Identities=14%  Similarity=0.106  Sum_probs=119.8

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFK  320 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~  320 (509)
                      +..+++|+.|+|++..+.+-. ...+.+++.|+.|+|.++.- +.+.+ ..+++|+.|.+.++. +..+. ..++|+.|.
T Consensus       143 ~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l-~~~~~-~~l~~L~~L~l~~n~-l~~l~-~~~~L~~L~  217 (597)
T 3oja_B          143 FHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRL-THVDL-SLIPSLFHANVSYNL-LSTLA-IPIAVEELD  217 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECTTSCC-SBCCG-GGCTTCSEEECCSSC-CSEEE-CCTTCSEEE
T ss_pred             hccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCCCC-CCcCh-hhhhhhhhhhcccCc-ccccc-CCchhheee
Confidence            356777777777766554321 12245677777777777642 22221 234677777777664 44443 245788888


Q ss_pred             EecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeecc
Q 010478          321 YFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATL  398 (509)
Q Consensus       321 ~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~  398 (509)
                      +++..- ..+.....++|+.+++........     ..+..+++|+.|+|+.+. +....+  +..+++|++|+|..+..
T Consensus       218 ls~n~l-~~~~~~~~~~L~~L~L~~n~l~~~-----~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          218 ASHNSI-NVVRGPVNVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL  290 (597)
T ss_dssp             CCSSCC-CEEECSCCSCCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCC
T ss_pred             ccCCcc-cccccccCCCCCEEECCCCCCCCC-----hhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCC
Confidence            777651 122223346788887776322111     334678899999998433 323333  66788999999954322


Q ss_pred             CccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc--cccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEE
Q 010478          399 NRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR--HSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMV  476 (509)
Q Consensus       399 ~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~--c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~  476 (509)
                      ..     +......+|+|+.|++...       .+..+|.  ..+.+|+.+.+.+-.-..-.       +...+.|+.+.
T Consensus       291 ~~-----l~~~~~~l~~L~~L~Ls~N-------~l~~i~~~~~~l~~L~~L~L~~N~l~~~~-------~~~~~~L~~L~  351 (597)
T 3oja_B          291 VA-----LNLYGQPIPTLKVLDLSHN-------HLLHVERNQPQFDRLENLYLDHNSIVTLK-------LSTHHTLKNLT  351 (597)
T ss_dssp             CE-----EECSSSCCTTCCEEECCSS-------CCCCCGGGHHHHTTCSEEECCSSCCCCCC-------CCTTCCCSEEE
T ss_pred             CC-----CCcccccCCCCcEEECCCC-------CCCccCcccccCCCCCEEECCCCCCCCcC-------hhhcCCCCEEE
Confidence            21     2233456889999998763       1222332  13567888887663321111       34557777777


Q ss_pred             EEe
Q 010478          477 VNR  479 (509)
Q Consensus       477 I~~  479 (509)
                      +..
T Consensus       352 l~~  354 (597)
T 3oja_B          352 LSH  354 (597)
T ss_dssp             CCS
T ss_pred             eeC
Confidence            654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.41  E-value=3.6e-05  Score=75.99  Aligned_cols=101  Identities=12%  Similarity=0.090  Sum_probs=48.5

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE----EECCce
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK----ISTPNL  316 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~----i~aP~L  316 (509)
                      +..+++|++|+|++..+++-. ...+.+++.|++|+|.++.- +.+.... .++|+.|.+.++. +..+.    -..++|
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l-~~l~~~~-~~~L~~L~l~~n~-l~~~~~~~~~~l~~L  147 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQL-KELPEKM-PKTLQELRVHENE-ITKVRKSVFNGLNQM  147 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCC-SBCCSSC-CTTCCEEECCSSC-CCBBCHHHHTTCTTC
T ss_pred             hccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCcC-CccChhh-cccccEEECCCCc-ccccCHhHhcCCccc
Confidence            445667777777665544321 11245567777777766542 1111111 1466666666554 22221    124556


Q ss_pred             eEEEEecCCc----cceeeecCCCCceEEEEEe
Q 010478          317 LSFKYFGPGQ----ELKLHIENAPQLVDISFRG  345 (509)
Q Consensus       317 ~~L~~~g~~~----~~~~~~~~~~~L~~l~i~~  345 (509)
                      +.|.+.+..-    .....+.++++|+.+++..
T Consensus       148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  180 (330)
T 1xku_A          148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  180 (330)
T ss_dssp             CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             cEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence            6666655431    0112234455666665554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.41  E-value=1.3e-05  Score=70.86  Aligned_cols=61  Identities=21%  Similarity=0.179  Sum_probs=36.3

Q ss_pred             cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEeccc
Q 010478          243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCY  304 (509)
Q Consensus       243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~  304 (509)
                      ..++|+.|+|++..+++..+...+..++.|+.|++.+|. ++.+..-..+++|+.|++.++.
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~   82 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR   82 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc
Confidence            346777777777776644444445667777777777765 2222111234566666666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.41  E-value=2e-05  Score=75.65  Aligned_cols=36  Identities=17%  Similarity=0.086  Sum_probs=20.1

Q ss_pred             cCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccc
Q 010478          245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSE  281 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~  281 (509)
                      ++|+.|+|++..+++-. ...+.+++.|++|+|.++.
T Consensus        37 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~   72 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNK   72 (270)
T ss_dssp             TTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSC
T ss_pred             CCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCc
Confidence            45777777665554311 1124556777777776653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.39  E-value=0.00017  Score=80.57  Aligned_cols=173  Identities=10%  Similarity=0.092  Sum_probs=95.3

Q ss_pred             CccCcCCcEEEEeeEE-ECh----hhHHHHH---hCCccccceeeecccceeeEEE---ecccccceEEEEecccCccEE
Q 010478          241 LSGVKYLRSLRLFSVN-VTG----EILEFIL---HNCPLLDQLSVVRSETLVSLKV---VGSAIQLKHLRISTCYRLNEI  309 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~-~~~----~~l~~ll---s~CP~Le~L~L~~c~~~~~l~i---~~~~~~Lk~L~l~~c~~l~~l  309 (509)
                      +..+++|+.|+|++.. +++    ..+..+-   ..+|.|+.|+|.++... .+.-   -..+++|+.|.+.++. +..+
T Consensus       511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~l  588 (876)
T 4ecn_A          511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRHL  588 (876)
T ss_dssp             GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCBC
T ss_pred             HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-cccc
Confidence            5677888888888776 665    2233322   45668888888887533 2211   1245778888888775 3333


Q ss_pred             E-E-ECCceeEEEEecCCc-cceeeecCCCC-ceEEEEEeccchhhhhhhcccccCC--CCccEEEEeechhhhhccC--
Q 010478          310 K-I-STPNLLSFKYFGPGQ-ELKLHIENAPQ-LVDISFRGVMLTRVRNVVGPITSCF--PQLKTLELDSCDELYAQFS--  381 (509)
Q Consensus       310 ~-i-~aP~L~~L~~~g~~~-~~~~~~~~~~~-L~~l~i~~~~~~~~~~~~~~l~~~l--~~L~~L~L~~~~~~~~~~~--  381 (509)
                      . + ..++|+.|.+++..- ..+-.+.++++ |+.+++......    .+...+...  ++|+.|.|+.+. +....|  
T Consensus       589 p~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~----~lp~~~~~~~~~~L~~L~Ls~N~-l~g~ip~l  663 (876)
T 4ecn_A          589 EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK----YIPNIFNAKSVYVMGSVDFSYNK-IGSEGRNI  663 (876)
T ss_dssp             CCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC----SCCSCCCTTCSSCEEEEECCSSC-TTTTSSSC
T ss_pred             hhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC----cCchhhhccccCCCCEEECcCCc-CCCccccc
Confidence            2 1 256788888877651 12223455666 888777762211    111222222  347788877432 211111  


Q ss_pred             ---CC--CCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478          382 ---EH--ELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD  424 (509)
Q Consensus       382 ---~~--~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~  424 (509)
                         ..  ..++|++|+|..+.-..  .  -..++..+++|+.|++...
T Consensus       664 ~~~l~~~~~~~L~~L~Ls~N~L~~--l--p~~~~~~l~~L~~L~Ls~N  707 (876)
T 4ecn_A          664 SCSMDDYKGINASTVTLSYNEIQK--F--PTELFATGSPISTIILSNN  707 (876)
T ss_dssp             SSCTTTCCCCCEEEEECCSSCCCS--C--CHHHHHTTCCCSEEECCSC
T ss_pred             hhhhccccCCCcCEEEccCCcCCc--c--CHHHHccCCCCCEEECCCC
Confidence               11  33478888874432221  1  1345567788888887653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.37  E-value=2.8e-05  Score=74.62  Aligned_cols=169  Identities=12%  Similarity=0.109  Sum_probs=93.8

Q ss_pred             ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEE----ECCcee
Q 010478          242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKI----STPNLL  317 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i----~aP~L~  317 (509)
                      ..+++|+.|.+.+..+.+-.   -+..+|.|+.|++.++.- ..+..-..+++|+.|.+.++. +..+.-    ..++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~---~l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGGNKL-HDISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCT---TGGGCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred             ccccceeeeeeCCCCccccc---ccccCCCCcEEECCCCCC-CCchhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCC
Confidence            35677777777766554321   145677888888877642 222111234677777777764 333221    246777


Q ss_pred             EEEEecCCcc-c-eeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEE
Q 010478          318 SFKYFGPGQE-L-KLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHL  393 (509)
Q Consensus       318 ~L~~~g~~~~-~-~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L  393 (509)
                      +|.+.+..-. . .-.+.++++|+.+++....-   .......+..+++|+.|.++.+. +....+  +..+++|++|++
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L  188 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL---QSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRL  188 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCcc---CccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEEC
Confidence            7777765411 1 11245667777777765221   11112334567788888887442 222222  456778888887


Q ss_pred             EeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          394 RVATLNRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       394 ~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      ..+.....    ....+..+++|+.|++..
T Consensus       189 ~~N~l~~~----~~~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          189 YQNQLKSV----PDGVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             CSSCCSCC----CTTTTTTCTTCCEEECCS
T ss_pred             CCCcCCcc----CHHHHhCCcCCCEEEccC
Confidence            54322211    123456778888887765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.37  E-value=3.3e-05  Score=75.78  Aligned_cols=14  Identities=21%  Similarity=0.219  Sum_probs=7.2

Q ss_pred             CCccccceeeeccc
Q 010478          268 NCPLLDQLSVVRSE  281 (509)
Q Consensus       268 ~CP~Le~L~L~~c~  281 (509)
                      +++.|++|+|.++.
T Consensus        93 ~l~~L~~L~L~~n~  106 (312)
T 1wwl_A           93 GISGLQELTLENLE  106 (312)
T ss_dssp             TTSCCCEEEEEEEB
T ss_pred             CcCCccEEEccCCc
Confidence            34555555555543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.35  E-value=2.2e-05  Score=77.12  Aligned_cols=172  Identities=17%  Similarity=0.144  Sum_probs=84.5

Q ss_pred             CccCcCCcEEEEee-EEEChhhHHHHHhCCccccceeeecccceeeEE-EecccccceEEEEecccCccEEE---EECCc
Q 010478          241 LSGVKYLRSLRLFS-VNVTGEILEFILHNCPLLDQLSVVRSETLVSLK-VVGSAIQLKHLRISTCYRLNEIK---ISTPN  315 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~-v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~-i~~~~~~Lk~L~l~~c~~l~~l~---i~aP~  315 (509)
                      +..+++|+.|+|++ -.+.+. +..-+.+++.|++|+|.++.-.+.+. .-..+++|+.|++.++.-...+.   -..|+
T Consensus        72 l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  150 (313)
T 1ogq_A           72 LANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             HhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence            45677788888774 333221 11224567778888887765321110 01234677777777664110111   12567


Q ss_pred             eeEEEEecCCc--cceeeecCCC-CceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccE
Q 010478          316 LLSFKYFGPGQ--ELKLHIENAP-QLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTH  390 (509)
Q Consensus       316 L~~L~~~g~~~--~~~~~~~~~~-~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~  390 (509)
                      |++|.+.+..-  ..+..+...+ +|+.+++......   ......+..+. |+.|.++.+. +....+  +..+++|++
T Consensus       151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~---~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~~l~~L~~  225 (313)
T 1ogq_A          151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT---GKIPPTFANLN-LAFVDLSRNM-LEGDASVLFGSDKNTQK  225 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE---EECCGGGGGCC-CSEEECCSSE-EEECCGGGCCTTSCCSE
T ss_pred             CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee---ccCChHHhCCc-ccEEECcCCc-ccCcCCHHHhcCCCCCE
Confidence            77777766551  1222344555 6777776652111   00111122333 7777776322 211222  456667777


Q ss_pred             EEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          391 LHLRVATLNRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       391 L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      |+|..+.... .    ...+..+++|+.|++..
T Consensus       226 L~L~~N~l~~-~----~~~~~~l~~L~~L~Ls~  253 (313)
T 1ogq_A          226 IHLAKNSLAF-D----LGKVGLSKNLNGLDLRN  253 (313)
T ss_dssp             EECCSSEECC-B----GGGCCCCTTCCEEECCS
T ss_pred             EECCCCceee-e----cCcccccCCCCEEECcC
Confidence            7774432211 0    11145567777777654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.33  E-value=6e-05  Score=77.49  Aligned_cols=38  Identities=24%  Similarity=0.474  Sum_probs=35.6

Q ss_pred             ccccCCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhhh
Q 010478          110 VEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYL  147 (509)
Q Consensus       110 ~~D~is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~l  147 (509)
                      ..|.|+.||+||+.+||++|+.+|.++++.|||+|+++
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI   48 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHH
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            45889999999999999999999999999999999874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.32  E-value=0.00023  Score=76.63  Aligned_cols=88  Identities=18%  Similarity=0.066  Sum_probs=41.3

Q ss_pred             cCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCcc
Q 010478          360 SCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRH  439 (509)
Q Consensus       360 ~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c  439 (509)
                      ..+++|+.|.++.+ .+ ..+| ..+++|++|+|..+.-...     .   ..+++|+.|++..       +.+..+|..
T Consensus       218 ~~~~~L~~L~Ls~N-~L-~~lp-~~l~~L~~L~Ls~N~L~~l-----p---~~~~~L~~L~Ls~-------N~L~~lp~~  279 (622)
T 3g06_A          218 ALPSGLKELIVSGN-RL-TSLP-VLPSELKELMVSGNRLTSL-----P---MLPSGLLSLSVYR-------NQLTRLPES  279 (622)
T ss_dssp             CCCTTCCEEECCSS-CC-SCCC-CCCTTCCEEECCSSCCSCC-----C---CCCTTCCEEECCS-------SCCCSCCGG
T ss_pred             CCCCCCCEEEccCC-cc-CcCC-CCCCcCcEEECCCCCCCcC-----C---cccccCcEEeCCC-------CCCCcCCHH
Confidence            33455666666532 11 1122 3445666666643321111     1   1456666666654       222334432


Q ss_pred             --ccCCccEEEEecccCCccHHHHHHHH
Q 010478          440 --SHQHLKLVELHGFLGRPIDLELAFYI  465 (509)
Q Consensus       440 --~~~~Lk~V~i~~f~g~~~e~~l~~~l  465 (509)
                        .+.+|+.+.+.+-.-.......+..+
T Consensus       280 l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          280 LIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             GGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             HhhccccCEEEecCCCCCCcCHHHHHhc
Confidence              35678888887654433333433333

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.31  E-value=7.1e-05  Score=79.47  Aligned_cols=219  Identities=16%  Similarity=0.119  Sum_probs=104.1

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccc---------------------eeeEEEecccccceEEE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSET---------------------LVSLKVVGSAIQLKHLR  299 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~---------------------~~~l~i~~~~~~Lk~L~  299 (509)
                      +..+++|+.|++.+..+.+  +...+..+ .|++|++.+|..                     ...... ..+++|+.|+
T Consensus       278 ~~~l~~L~~L~l~~~~l~~--l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~  353 (570)
T 2z63_A          278 FNCLTNVSSFSLVSVTIER--VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLD  353 (570)
T ss_dssp             TGGGTTCSEEEEESCEECS--CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEE
T ss_pred             hcCcCcccEEEecCccchh--hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc-ccCCCCCEEe
Confidence            4456677777777666542  22223344 566666655532                     111111 2234555555


Q ss_pred             EecccCccEEEE------ECCceeEEEEecCCc-cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEee
Q 010478          300 ISTCYRLNEIKI------STPNLLSFKYFGPGQ-ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDS  372 (509)
Q Consensus       300 l~~c~~l~~l~i------~aP~L~~L~~~g~~~-~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~  372 (509)
                      +.++. +..+..      ..++|++|.+.++.- .....+.++++|+.+++.......  ......+..+++|+.|+++.
T Consensus       354 l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~  430 (570)
T 2z63_A          354 LSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISH  430 (570)
T ss_dssp             CCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES--CTTSCTTTTCTTCCEEECTT
T ss_pred             CcCCc-cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccc--ccchhhhhcCCCCCEEeCcC
Confidence            55443 222210      245566665555431 111224556666666555411100  00012234566777777764


Q ss_pred             chhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCcccc-Cc--cccCCccEE
Q 010478          373 CDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKV-PR--HSHQHLKLV  447 (509)
Q Consensus       373 ~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~-p~--c~~~~Lk~V  447 (509)
                      +. +....+  +..+++|++|+|..+.-.   ...+...+..+++|+.|++...       .+... |.  ....+|+.+
T Consensus       431 n~-l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~p~~~~~l~~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          431 TH-TRVAFNGIFNGLSSLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQC-------QLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             SC-CEECCTTTTTTCTTCCEEECTTCEEG---GGEECSCCTTCTTCCEEECTTS-------CCCEECTTTTTTCTTCCEE
T ss_pred             Cc-ccccchhhhhcCCcCcEEECcCCcCc---cccchhhhhcccCCCEEECCCC-------ccccCChhhhhcccCCCEE
Confidence            32 111122  455667777777333111   0012234566777777776542       11111 21  235788999


Q ss_pred             EEecccCCccHHHHHHHHHhcCccCCcEEEEecC
Q 010478          448 ELHGFLGRPIDLELAFYILENAMTLEKMVVNRTN  481 (509)
Q Consensus       448 ~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~~  481 (509)
                      .+.+-.-..-    ....+.+.+.|+.+.+....
T Consensus       500 ~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          500 NMASNQLKSV----PDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             ECCSSCCSCC----CTTTTTTCTTCCEEECCSSC
T ss_pred             eCCCCcCCCC----CHHHhhcccCCcEEEecCCc
Confidence            8876322111    11134677899988887554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.31  E-value=0.00055  Score=71.80  Aligned_cols=62  Identities=19%  Similarity=0.161  Sum_probs=43.4

Q ss_pred             cCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478          360 SCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD  424 (509)
Q Consensus       360 ~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~  424 (509)
                      ..+++|++|+++.+. +....+  ...+++|++|++..+.  -.+...+...+..+++|+.|++...
T Consensus       321 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~~~l~~L~~L~Ls~N  384 (520)
T 2z7x_B          321 SKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQ--LKELSKIAEMTTQMKSLQQLDISQN  384 (520)
T ss_dssp             SSCCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSSC--CCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred             hhCCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCCc--cCccccchHHHhhCCCCCEEECCCC
Confidence            578889999998443 322233  6778899999994432  2233456677889999999999764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.25  E-value=2.5e-05  Score=85.11  Aligned_cols=37  Identities=14%  Similarity=0.066  Sum_probs=19.0

Q ss_pred             cCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEEEec
Q 010478          441 HQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRT  480 (509)
Q Consensus       441 ~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~  480 (509)
                      ..+|+.+.+.+-.-..-.-....   ...+.|+.+.+...
T Consensus       583 l~~L~~L~L~~N~l~~~~~~~~~---~~~~~L~~l~l~~N  619 (680)
T 1ziw_A          583 QVSLKSLNLQKNLITSVEKKVFG---PAFRNLTELDMRFN  619 (680)
T ss_dssp             CTTCCEEECTTSCCCBCCHHHHH---HHHTTCSEEECTTC
T ss_pred             CCCCCEEECCCCcCCccChhHhc---ccccccCEEEccCC
Confidence            46788887766322211112111   13377887776543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.23  E-value=6e-05  Score=72.22  Aligned_cols=62  Identities=21%  Similarity=0.191  Sum_probs=38.1

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEeccc
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCY  304 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~  304 (509)
                      +..+++|+.|+|++..++.- -..++.+++.|++|+|.++.- ..+.  +-..+++|+.|.+.++.
T Consensus        57 ~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~  120 (270)
T 2o6q_A           57 FHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQ  120 (270)
T ss_dssp             SSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEEECCSSC
T ss_pred             hcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEEECCCCc
Confidence            56778889998887765421 122346788888888887742 2111  11234667777776654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.22  E-value=2.2e-05  Score=75.44  Aligned_cols=123  Identities=15%  Similarity=0.138  Sum_probs=57.9

Q ss_pred             cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEecccCccEEEE----ECCceeE
Q 010478          245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCYRLNEIKI----STPNLLS  318 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~~l~~l~i----~aP~L~~  318 (509)
                      ++|+.|+|++..+++-.- ..+.+++.|+.|++.++. ++.+..  -..+++|+.|++.++. +..+..    ..++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred             CCccEEECCCCcccccCH-hHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccE
Confidence            356677666555443211 123456677777776663 221110  1123566666666554 333221    2355666


Q ss_pred             EEEecCCc--cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEee
Q 010478          319 FKYFGPGQ--ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDS  372 (509)
Q Consensus       319 L~~~g~~~--~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~  372 (509)
                      |.+.+..-  .....+.++++|+.+++.......  ..+...+..+++|++|.++.
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~l~~~~~~l~~L~~L~Ls~  158 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSS  158 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC--CCCCGGGGGCTTCCEEECCS
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCccce--ecCchhhccCCCCCEEECCC
Confidence            66554431  011235556666666665421110  00122334566777777763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.22  E-value=0.00039  Score=74.89  Aligned_cols=75  Identities=16%  Similarity=0.024  Sum_probs=42.4

Q ss_pred             CCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCccccCCccEEEEecccCCccHHHHHHH
Q 010478          385 LPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFY  464 (509)
Q Consensus       385 f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V~i~~f~g~~~e~~l~~~  464 (509)
                      +++|++|+|..+....     +.   ..+++|+.|++..       +.+..+|. ...+|+.+.+.+-.-.  .+   --
T Consensus       220 ~~~L~~L~Ls~N~L~~-----lp---~~l~~L~~L~Ls~-------N~L~~lp~-~~~~L~~L~Ls~N~L~--~l---p~  278 (622)
T 3g06_A          220 PSGLKELIVSGNRLTS-----LP---VLPSELKELMVSG-------NRLTSLPM-LPSGLLSLSVYRNQLT--RL---PE  278 (622)
T ss_dssp             CTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCS-------SCCSCCCC-CCTTCCEEECCSSCCC--SC---CG
T ss_pred             CCCCCEEEccCCccCc-----CC---CCCCcCcEEECCC-------CCCCcCCc-ccccCcEEeCCCCCCC--cC---CH
Confidence            4667777764332111     11   4456777777655       23344555 5678888888764322  11   11


Q ss_pred             HHhcCccCCcEEEEec
Q 010478          465 ILENAMTLEKMVVNRT  480 (509)
Q Consensus       465 lL~na~~Le~m~I~~~  480 (509)
                      -+.+.+.|+.+.+...
T Consensus       279 ~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          279 SLIHLSSETTVNLEGN  294 (622)
T ss_dssp             GGGGSCTTCEEECCSC
T ss_pred             HHhhccccCEEEecCC
Confidence            2467788888888654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.16  E-value=5e-05  Score=84.89  Aligned_cols=58  Identities=16%  Similarity=0.170  Sum_probs=32.3

Q ss_pred             CcCCcEEEEeeEEEChhhHHH--HHhCCccccceeeecccceeeEEEecccccceEEEEeccc
Q 010478          244 VKYLRSLRLFSVNVTGEILEF--ILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCY  304 (509)
Q Consensus       244 ~p~Lk~L~L~~v~~~~~~l~~--lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~  304 (509)
                      +++|+.|+|++..+.  .+..  .+.+++.|+.|+|+++.-. .+..-..+++|+.|.+.++.
T Consensus       547 l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          547 GPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQ  606 (876)
T ss_dssp             TTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSC
T ss_pred             cCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCc
Confidence            447777777776655  2322  4566777777777766422 22111233556666665554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.11  E-value=8e-05  Score=73.45  Aligned_cols=171  Identities=16%  Similarity=0.135  Sum_probs=101.7

Q ss_pred             CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE-EEecccccceEEEEecccCccEEEEE-CCceeEEEE
Q 010478          244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRISTCYRLNEIKIS-TPNLLSFKY  321 (509)
Q Consensus       244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~c~~l~~l~i~-aP~L~~L~~  321 (509)
                      .+.|+.|+|++..+++-.- ..+.+++.|++|+|.++.-.... ..-..+++|+.|++.++. +..+... .++|++|.+
T Consensus        51 ~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l  128 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRV  128 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEEC
T ss_pred             CCCCeEEECCCCcCCEeCh-hhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhcccccEEEC
Confidence            4789999999887664211 13578999999999988532110 111245899999999876 4433211 378999999


Q ss_pred             ecCCcc--ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccC
Q 010478          322 FGPGQE--LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLN  399 (509)
Q Consensus       322 ~g~~~~--~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~  399 (509)
                      .+..-.  ....+.++++|+.+++........+ .....+..+++|+.|.++.+. + ..++...+++|++|++..+...
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~l~~L~~L~l~~n~-l-~~l~~~~~~~L~~L~l~~n~l~  205 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSG-IENGAFQGMKKLSYIRIADTN-I-TTIPQGLPPSLTELHLDGNKIT  205 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG-BCTTGGGGCTTCCEEECCSSC-C-CSCCSSCCTTCSEEECTTSCCC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccC-cChhhccCCCCcCEEECCCCc-c-ccCCccccccCCEEECCCCcCC
Confidence            877511  1123678899999998863221111 112334667888888887432 1 1223222367777777433211


Q ss_pred             ccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          400 RESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       400 ~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      ...    ...+..+++|+.|++..
T Consensus       206 ~~~----~~~~~~l~~L~~L~Ls~  225 (330)
T 1xku_A          206 KVD----AASLKGLNNLAKLGLSF  225 (330)
T ss_dssp             EEC----TGGGTTCTTCCEEECCS
T ss_pred             ccC----HHHhcCCCCCCEEECCC
Confidence            111    22345667777777654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.07  E-value=0.00031  Score=71.83  Aligned_cols=37  Identities=24%  Similarity=0.509  Sum_probs=35.1

Q ss_pred             ccccCCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhh
Q 010478          110 VEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKY  146 (509)
Q Consensus       110 ~~D~is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~  146 (509)
                      ..|.++.||+|++.+||+||+.+|+++++.|||+|+.
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~   51 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRI   51 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHh
Confidence            4588999999999999999999999999999999986

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.06  E-value=8.6e-05  Score=80.39  Aligned_cols=59  Identities=17%  Similarity=0.153  Sum_probs=36.7

Q ss_pred             CcCCcEEEEeeEEEChhhHHH--HHhCCccccceeeecccceeeEEEecccccceEEEEeccc
Q 010478          244 VKYLRSLRLFSVNVTGEILEF--ILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCY  304 (509)
Q Consensus       244 ~p~Lk~L~L~~v~~~~~~l~~--lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~  304 (509)
                      +++|+.|+|++..++  .+..  .+.+++.|+.|++.++...+.+..-..+++|+.|.+.++.
T Consensus       304 l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~  364 (636)
T 4eco_A          304 GEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ  364 (636)
T ss_dssp             GGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE
T ss_pred             CCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc
Confidence            378888888887776  3333  5677888888888877533222111123566666666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.04  E-value=0.00011  Score=71.36  Aligned_cols=165  Identities=16%  Similarity=0.104  Sum_probs=89.8

Q ss_pred             CCccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE---E-ECCc
Q 010478          240 ELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK---I-STPN  315 (509)
Q Consensus       240 ~~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~---i-~aP~  315 (509)
                      .+..+++|+.|+|++..++.-..   ...++.|+.|+|+++.--..-.....+++|+.|.+.++. +..+.   + ..++
T Consensus        50 ~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~  125 (290)
T 1p9a_G           50 TLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGE  125 (290)
T ss_dssp             GGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTT
T ss_pred             HhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCC
Confidence            36688999999999877654221   167999999999987532111112345788888888775 33322   1 2467


Q ss_pred             eeEEEEecCCcc-c-eeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEE
Q 010478          316 LLSFKYFGPGQE-L-KLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHL  391 (509)
Q Consensus       316 L~~L~~~g~~~~-~-~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L  391 (509)
                      |+.|.+.+..-. . .-.+..+++|+.+++....-   ......++..+++|+.|.|+.+. + ..+|  .....+|++|
T Consensus       126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l---~~l~~~~~~~l~~L~~L~L~~N~-l-~~ip~~~~~~~~L~~l  200 (290)
T 1p9a_G          126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL---TELPAGLLNGLENLDTLLLQENS-L-YTIPKGFFGSHLLPFA  200 (290)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC---SCCCTTTTTTCTTCCEEECCSSC-C-CCCCTTTTTTCCCSEE
T ss_pred             CCEEECCCCCCCccChhhcccccCCCEEECCCCcC---CccCHHHhcCcCCCCEEECCCCc-C-CccChhhcccccCCeE
Confidence            777777665410 1 11234556666666654211   11111233456677777776322 2 1222  3344566777


Q ss_pred             EEEeeccC-ccCHHHHHHHhhcC
Q 010478          392 HLRVATLN-RESLLGLASIMKAC  413 (509)
Q Consensus       392 ~L~~~~~~-~~~~~~l~~lL~~~  413 (509)
                      .|..+... ..+..++...++.-
T Consensus       201 ~L~~Np~~C~c~~~~l~~wl~~~  223 (290)
T 1p9a_G          201 FLHGNPWLCNCEILYFRRWLQDN  223 (290)
T ss_dssp             ECCSCCBCCSGGGHHHHHHHHHT
T ss_pred             EeCCCCccCcCccHHHHHHHHhC
Confidence            76443211 23344455555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.03  E-value=0.0011  Score=60.08  Aligned_cols=100  Identities=17%  Similarity=0.191  Sum_probs=50.5

Q ss_pred             CceeEEEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhh-ccC-CCCCCcccEE
Q 010478          314 PNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYA-QFS-EHELPNLTHL  391 (509)
Q Consensus       314 P~L~~L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~-~~~-~~~f~~Lk~L  391 (509)
                      ++|++|.+.++.....-.+..+++|+.+++.....   .......+..+++|+.|.++.+. +.. ... +..+++|++|
T Consensus        66 ~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l---~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L  141 (197)
T 4ezg_A           66 HNIKDLTINNIHATNYNPISGLSNLERLRIMGKDV---TSDKIPNLSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSI  141 (197)
T ss_dssp             TTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTC---BGGGSCCCTTCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEE
T ss_pred             CCCCEEEccCCCCCcchhhhcCCCCCEEEeECCcc---CcccChhhcCCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEE
Confidence            34444444444311111345566677776665211   11111233567778888777432 211 111 5567777888


Q ss_pred             EEEeec-cCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          392 HLRVAT-LNRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       392 ~L~~~~-~~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      +|..+. ...  .    ..+..+|+|+.|++..
T Consensus       142 ~L~~n~~i~~--~----~~l~~l~~L~~L~l~~  168 (197)
T 4ezg_A          142 DLSYNGAITD--I----MPLKTLPELKSLNIQF  168 (197)
T ss_dssp             ECCSCTBCCC--C----GGGGGCSSCCEEECTT
T ss_pred             EccCCCCccc--c----HhhcCCCCCCEEECCC
Confidence            774442 111  1    1466777777777754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.02  E-value=4.6e-05  Score=76.85  Aligned_cols=159  Identities=14%  Similarity=0.101  Sum_probs=81.2

Q ss_pred             CcCCcEEEEeeEEEChhh---HHHHHhC-Cccccceeeeccccee--eEEEecccccceEEEEecccCccEEE-------
Q 010478          244 VKYLRSLRLFSVNVTGEI---LEFILHN-CPLLDQLSVVRSETLV--SLKVVGSAIQLKHLRISTCYRLNEIK-------  310 (509)
Q Consensus       244 ~p~Lk~L~L~~v~~~~~~---l~~lls~-CP~Le~L~L~~c~~~~--~l~i~~~~~~Lk~L~l~~c~~l~~l~-------  310 (509)
                      .++|+.|+|+++.+++..   +..++.. ++.|++|+|++|.--.  ...+...+.+|+.|++.+|. +....       
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHH
Confidence            356777777777666543   3333332 4577777777764211  00111223456666666554 11100       


Q ss_pred             --EECCceeEEEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhh---hccC--CC
Q 010478          311 --ISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELY---AQFS--EH  383 (509)
Q Consensus       311 --i~aP~L~~L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~---~~~~--~~  383 (509)
                        -..++|++|.++++.                     ..+.....+...+...++|++|+|+.+.--.   ..+.  +.
T Consensus       150 L~~~~~~L~~L~Ls~n~---------------------l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~  208 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNP---------------------LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD  208 (372)
T ss_dssp             HHSTTCCCCEEECCSSC---------------------CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG
T ss_pred             HHhcCCccceeeCCCCC---------------------CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh
Confidence              012344444444433                     0000111222334567788888887443111   1111  44


Q ss_pred             CCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478          384 ELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD  424 (509)
Q Consensus       384 ~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~  424 (509)
                      ..++|++|+|..+.........+...++.+|.|+.|++...
T Consensus       209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence            55688888885553333334456667778889998888663

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.00  E-value=0.0001  Score=70.65  Aligned_cols=174  Identities=15%  Similarity=0.105  Sum_probs=92.5

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEE---EE-ECC
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEI---KI-STP  314 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l---~i-~aP  314 (509)
                      +..+++|+.|+|++..+.+-. ...+.+++.|+.|+|.++.- +.+.  .-..+++|+.|.+.++. +..+   .+ ..+
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~  124 (276)
T 2z62_A           48 FFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLK  124 (276)
T ss_dssp             TTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCT
T ss_pred             hccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCcc-CccChhhhcCCccccEEECCCCC-ccccCchhcccCC
Confidence            556788888888876654311 11246688888888887752 2111  11234788888887765 2211   12 357


Q ss_pred             ceeEEEEecCCc-c--ceeeecCCCCceEEEEEeccchhh-hhhhcccccCCCCcc-EEEEeechhhhhccC-CCCCCcc
Q 010478          315 NLLSFKYFGPGQ-E--LKLHIENAPQLVDISFRGVMLTRV-RNVVGPITSCFPQLK-TLELDSCDELYAQFS-EHELPNL  388 (509)
Q Consensus       315 ~L~~L~~~g~~~-~--~~~~~~~~~~L~~l~i~~~~~~~~-~~~~~~l~~~l~~L~-~L~L~~~~~~~~~~~-~~~f~~L  388 (509)
                      +|++|.+.+..- .  .+-.+.++++|+.+++....-... ...+.. +..++.+. .|.++... +....+ .....+|
T Consensus       125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L  202 (276)
T 2z62_A          125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRL  202 (276)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHTCTTCCEEEECCSSC-CCEECTTSSCSCCE
T ss_pred             CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh-hhhccccceeeecCCCc-ccccCccccCCCcc
Confidence            888888876651 1  233567788999998876321111 111111 12233333 66665322 211111 2233478


Q ss_pred             cEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          389 THLHLRVATLNRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       389 k~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      ++|+|..+.-....    ..++..+++|+.|++..
T Consensus       203 ~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          203 KELALDTNQLKSVP----DGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             EEEECCSSCCSCCC----TTTTTTCCSCCEEECCS
T ss_pred             cEEECCCCceeecC----HhHhcccccccEEEccC
Confidence            88888543222111    23456677777776654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.99  E-value=0.00017  Score=73.66  Aligned_cols=41  Identities=29%  Similarity=0.531  Sum_probs=37.4

Q ss_pred             ccccCCCCcHH----HHHHHHcCCChhhHHHHHhhhhhhhh------hccc
Q 010478          110 VEDLMSLLPDD----ILINIISRLPLKEAAKTSVLSSRWKY------LWTF  150 (509)
Q Consensus       110 ~~D~is~LPde----iL~~ILs~Lp~~d~~rts~lSrRWr~------lw~~  150 (509)
                      ..|.|+.||+|    |+.+||++|+.++.++++.|||+|++      +|+.
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~   57 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKK   57 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence            45889999999    99999999999999999999999995      5774

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=96.96  E-value=0.00027  Score=75.11  Aligned_cols=150  Identities=13%  Similarity=0.061  Sum_probs=75.8

Q ss_pred             ccCcCCcEEEEeeEEEChhhHHHHHh--CCccccceeeecccceeeE---------------EEe---c-----------
Q 010478          242 SGVKYLRSLRLFSVNVTGEILEFILH--NCPLLDQLSVVRSETLVSL---------------KVV---G-----------  290 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~l~~lls--~CP~Le~L~L~~c~~~~~l---------------~i~---~-----------  290 (509)
                      ..++.|+.|.|.+..+.+..+..+..  ..+.|++|++.+|...+.+               .+.   .           
T Consensus       246 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~  325 (562)
T 3a79_B          246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY  325 (562)
T ss_dssp             HSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHH
T ss_pred             hccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhh
Confidence            45678888888888888766554433  3558999999887522110               000   0           


Q ss_pred             ---ccccceEEEEecccCccEEE--EECCceeEEEEecCCc--cceeeecCCCCceEEEEEeccchhhhhhhcccccCCC
Q 010478          291 ---SAIQLKHLRISTCYRLNEIK--ISTPNLLSFKYFGPGQ--ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFP  363 (509)
Q Consensus       291 ---~~~~Lk~L~l~~c~~l~~l~--i~aP~L~~L~~~g~~~--~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~  363 (509)
                         ...+|+.|.+.++. +..+.  -..++|++|.+.+..-  ..+-.+.++++|+.+++....-.... .+...+..++
T Consensus       326 ~~~~~~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~l~  403 (562)
T 3a79_B          326 SVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF-KVALMTKNMS  403 (562)
T ss_dssp             HHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT-HHHHTTTTCT
T ss_pred             hhhccCcceEEEccCCC-cccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc-cchhhhcCCC
Confidence               00235555555443 11111  1346677777766541  11223456677777777652211110 0112234566


Q ss_pred             CccEEEEeechhhhhccC---CCCCCcccEEEEE
Q 010478          364 QLKTLELDSCDELYAQFS---EHELPNLTHLHLR  394 (509)
Q Consensus       364 ~L~~L~L~~~~~~~~~~~---~~~f~~Lk~L~L~  394 (509)
                      +|+.|+++.+. +...++   +..+++|++|++.
T Consensus       404 ~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~  436 (562)
T 3a79_B          404 SLETLDVSLNS-LNSHAYDRTCAWAESILVLNLS  436 (562)
T ss_dssp             TCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECC
T ss_pred             CCCEEECCCCc-CCCccChhhhcCcccCCEEECC
Confidence            67777766322 111122   3344555555553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=96.94  E-value=0.00028  Score=67.35  Aligned_cols=79  Identities=11%  Similarity=0.108  Sum_probs=38.3

Q ss_pred             ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE-EECCceeEEE
Q 010478          242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK-ISTPNLLSFK  320 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~-i~aP~L~~L~  320 (509)
                      ..+++|+.|++.+..+++-.   -+..++.|+.|+|.++.- +.+.--..+++|+.|.+.++. +..+. +..++|+.|.
T Consensus        38 ~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~  112 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQI-SDLSPLKDLTKLEELSVNRNR-LKNLNGIPSACLSRLF  112 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCC-CCCGGGTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEE
T ss_pred             hhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCcc-CCChhhccCCCCCEEECCCCc-cCCcCccccCcccEEE
Confidence            34566677776665554321   245566777777766532 111001234566666666554 11110 0015555555


Q ss_pred             EecCC
Q 010478          321 YFGPG  325 (509)
Q Consensus       321 ~~g~~  325 (509)
                      +.+..
T Consensus       113 L~~N~  117 (263)
T 1xeu_A          113 LDNNE  117 (263)
T ss_dssp             CCSSC
T ss_pred             ccCCc
Confidence            55543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=96.90  E-value=2.1e-05  Score=67.96  Aligned_cols=61  Identities=21%  Similarity=0.152  Sum_probs=35.9

Q ss_pred             cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEeccc
Q 010478          243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCY  304 (509)
Q Consensus       243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~  304 (509)
                      .+++|+.|++++..+++..+...+..++.|+.|++.+|. ++.+..-..+++|+.|++.++.
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~   75 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNR   75 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCc
Confidence            446777777777776644444455667777777777764 2222111223566666666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=96.88  E-value=9.3e-05  Score=73.09  Aligned_cols=81  Identities=17%  Similarity=0.175  Sum_probs=38.6

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE----EECCce
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK----ISTPNL  316 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~----i~aP~L  316 (509)
                      +..+++|+.|+|++..+++-. ...+.+++.|++|++.++.- +.+.... .++|++|.+.++. +..+.    -..++|
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~l~~~~-~~~L~~L~l~~n~-i~~~~~~~~~~l~~L  149 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHL-VEIPPNL-PSSLVELRIHDNR-IRKVPKGVFSGLRNM  149 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEECCSSCC-CSCCSSC-CTTCCEEECCSSC-CCCCCSGGGSSCSSC
T ss_pred             hhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEECCCCcC-CccCccc-cccCCEEECCCCc-cCccCHhHhCCCccC
Confidence            445666666666655443211 11235566667666666532 1111111 1456666666554 22221    124556


Q ss_pred             eEEEEecCC
Q 010478          317 LSFKYFGPG  325 (509)
Q Consensus       317 ~~L~~~g~~  325 (509)
                      +.|.+.+..
T Consensus       150 ~~L~l~~n~  158 (332)
T 2ft3_A          150 NCIEMGGNP  158 (332)
T ss_dssp             CEEECCSCC
T ss_pred             CEEECCCCc
Confidence            666655443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=96.87  E-value=0.00077  Score=71.59  Aligned_cols=81  Identities=17%  Similarity=0.148  Sum_probs=41.5

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEE-----ECCc
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKI-----STPN  315 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i-----~aP~  315 (509)
                      +..+++|++|+|++..+++-. ...+.+++.|++|+|+++.- +.+.-. .+++|++|++.++. +..+.+     ..++
T Consensus        72 ~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l-~~lp~~-~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~  147 (562)
T 3a79_B           72 ISFLSELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNRL-QNISCC-PMASLRHLDLSFND-FDVLPVCKEFGNLTK  147 (562)
T ss_dssp             TTTCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECTTSCC-CEECSC-CCTTCSEEECCSSC-CSBCCCCGGGGGCTT
T ss_pred             hccCCCccEEECCCCCCCcCC-HHHhCCCCCCCEEECCCCcC-CccCcc-ccccCCEEECCCCC-ccccCchHhhcccCc
Confidence            455666777777665544311 11245566677777766542 222111 34666666666654 332221     2456


Q ss_pred             eeEEEEecCC
Q 010478          316 LLSFKYFGPG  325 (509)
Q Consensus       316 L~~L~~~g~~  325 (509)
                      |++|.+++..
T Consensus       148 L~~L~L~~n~  157 (562)
T 3a79_B          148 LTFLGLSAAK  157 (562)
T ss_dssp             CCEEEEECSB
T ss_pred             ccEEecCCCc
Confidence            6666666543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=96.77  E-value=0.00041  Score=75.43  Aligned_cols=176  Identities=16%  Similarity=0.087  Sum_probs=84.8

Q ss_pred             ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE-EEecccccceEEEEecccC--ccEEE---EECCc
Q 010478          242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRISTCYR--LNEIK---ISTPN  315 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~c~~--l~~l~---i~aP~  315 (509)
                      ..+++|+.|+|++..+.+..-...+.+++.|++|++.++...... ..-..+++|+.|.+.++..  +..+.   -..++
T Consensus       402 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~  481 (680)
T 1ziw_A          402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN  481 (680)
T ss_dssp             TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred             hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCC
Confidence            345556666665544332111122345666666666655421100 0001235666666655431  00000   12467


Q ss_pred             eeEEEEecCCc-c-ceeeecCCCCceEEEEEeccchhhh-hh----hcccccCCCCccEEEEeechhhhhccC---CCCC
Q 010478          316 LLSFKYFGPGQ-E-LKLHIENAPQLVDISFRGVMLTRVR-NV----VGPITSCFPQLKTLELDSCDELYAQFS---EHEL  385 (509)
Q Consensus       316 L~~L~~~g~~~-~-~~~~~~~~~~L~~l~i~~~~~~~~~-~~----~~~l~~~l~~L~~L~L~~~~~~~~~~~---~~~f  385 (509)
                      |+.|.+++..- . .+-.+.++++|+.+++......... ..    ....+..+++|+.|+|+.+. +. .++   +..+
T Consensus       482 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~-~i~~~~~~~l  559 (680)
T 1ziw_A          482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FD-EIPVEVFKDL  559 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CC-CCCTTTTTTC
T ss_pred             CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CC-CCCHHHcccc
Confidence            88887776541 0 1123566788888887763211110 00    01124667788888887432 21 222   4566


Q ss_pred             CcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          386 PNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       386 ~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      ++|++|+|..+.-....    ...+..+++|+.|++..
T Consensus       560 ~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~L~~  593 (680)
T 1ziw_A          560 FELKIIDLGLNNLNTLP----ASVFNNQVSLKSLNLQK  593 (680)
T ss_dssp             TTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECTT
T ss_pred             cCcceeECCCCCCCcCC----HhHhCCCCCCCEEECCC
Confidence            77777777443221111    22445667777777755

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.77  E-value=0.0013  Score=68.10  Aligned_cols=154  Identities=19%  Similarity=0.149  Sum_probs=77.8

Q ss_pred             cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE-E-ECCceeEEEEe
Q 010478          245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK-I-STPNLLSFKYF  322 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~-i-~aP~L~~L~~~  322 (509)
                      ++|++|+|++..+++  +.. +.+++.|++|++.++.- +.  +.....+|+.|++.++. +..+. + ..++|+.|.+.
T Consensus       131 ~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~l-~~--lp~~~~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSL-KK--LPDLPPSLEFIAAGNNQ-LEELPELQNLPFLTAIYAD  203 (454)
T ss_dssp             TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCC-SC--CCCCCTTCCEEECCSSC-CSSCCCCTTCTTCCEEECC
T ss_pred             CCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCcC-cc--cCCCcccccEEECcCCc-CCcCccccCCCCCCEEECC
Confidence            577777777666553  222 56677777777777642 22  22222577777777664 22221 1 24667777666


Q ss_pred             cCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCccC
Q 010478          323 GPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRES  402 (509)
Q Consensus       323 g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~~  402 (509)
                      +..  ..-.....++|+.+++.......    +.. +..+++|+.|.++.+. + ..++ ..+++|++|++..+.-..  
T Consensus       204 ~N~--l~~l~~~~~~L~~L~l~~n~l~~----lp~-~~~l~~L~~L~l~~N~-l-~~l~-~~~~~L~~L~l~~N~l~~--  271 (454)
T 1jl5_A          204 NNS--LKKLPDLPLSLESIVAGNNILEE----LPE-LQNLPFLTTIYADNNL-L-KTLP-DLPPSLEALNVRDNYLTD--  271 (454)
T ss_dssp             SSC--CSSCCCCCTTCCEEECCSSCCSS----CCC-CTTCTTCCEEECCSSC-C-SSCC-SCCTTCCEEECCSSCCSC--
T ss_pred             CCc--CCcCCCCcCcccEEECcCCcCCc----ccc-cCCCCCCCEEECCCCc-C-Cccc-ccccccCEEECCCCcccc--
Confidence            654  11111122456666665521111    111 3456777777776322 1 1122 223677777774432111  


Q ss_pred             HHHHHHHhhcCCCCcEEEEEE
Q 010478          403 LLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       403 ~~~l~~lL~~~P~Le~L~i~~  423 (509)
                            +-...++|+.|++..
T Consensus       272 ------l~~~~~~L~~L~ls~  286 (454)
T 1jl5_A          272 ------LPELPQSLTFLDVSE  286 (454)
T ss_dssp             ------CCCCCTTCCEEECCS
T ss_pred             ------cCcccCcCCEEECcC
Confidence                  111236777777754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.62  E-value=0.0025  Score=63.76  Aligned_cols=35  Identities=11%  Similarity=0.072  Sum_probs=19.7

Q ss_pred             cCCcEEEEeeEEEC-h---hhHHHHH---hCCccccceeeec
Q 010478          245 KYLRSLRLFSVNVT-G---EILEFIL---HNCPLLDQLSVVR  279 (509)
Q Consensus       245 p~Lk~L~L~~v~~~-~---~~l~~ll---s~CP~Le~L~L~~  279 (509)
                      ++++.|.+....++ +   ..+..+.   ...|+|+.|.|..
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~  148 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGD  148 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECC
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecC
Confidence            34555555544333 1   2344443   3478999998864

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.59  E-value=0.0013  Score=68.06  Aligned_cols=11  Identities=27%  Similarity=0.338  Sum_probs=6.7

Q ss_pred             CCCCcEEEEEE
Q 010478          413 CPFLQTLIVQF  423 (509)
Q Consensus       413 ~P~Le~L~i~~  423 (509)
                      .++|+.|++..
T Consensus       356 l~~L~~L~L~~  366 (454)
T 1jl5_A          356 PQNLKQLHVEY  366 (454)
T ss_dssp             CTTCCEEECCS
T ss_pred             hhhccEEECCC
Confidence            45666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=96.58  E-value=0.00026  Score=62.97  Aligned_cols=60  Identities=17%  Similarity=0.117  Sum_probs=34.3

Q ss_pred             ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEeccc
Q 010478          242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCY  304 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~  304 (509)
                      ..+++|+.|+|++..++.  +..+...+|.|+.|+++++. ++.+..-..+++|+.|.+.++.
T Consensus        16 ~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~   75 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR   75 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC
T ss_pred             CCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc
Confidence            345777788877766653  22233345578888887764 2222222234566666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=96.57  E-value=0.00019  Score=70.80  Aligned_cols=99  Identities=17%  Similarity=0.130  Sum_probs=66.5

Q ss_pred             CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE--EEecccccceEEEEecccCccEEEEE-CCceeEEE
Q 010478          244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL--KVVGSAIQLKHLRISTCYRLNEIKIS-TPNLLSFK  320 (509)
Q Consensus       244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l--~i~~~~~~Lk~L~l~~c~~l~~l~i~-aP~L~~L~  320 (509)
                      +++|+.|+|++..+.+-. ...+.+++.|++|+|.++.- +.+  ..-..+++|+.|++.++. +..+... .++|++|.
T Consensus        53 ~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L~~L~  129 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELR  129 (332)
T ss_dssp             CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-CEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTCCEEE
T ss_pred             CCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCcc-CccCHhHhhCcCCCCEEECCCCc-CCccCccccccCCEEE
Confidence            478999999987655321 12357899999999999853 222  111345899999999875 3332211 27899999


Q ss_pred             EecCCc-cc-eeeecCCCCceEEEEEe
Q 010478          321 YFGPGQ-EL-KLHIENAPQLVDISFRG  345 (509)
Q Consensus       321 ~~g~~~-~~-~~~~~~~~~L~~l~i~~  345 (509)
                      +.+..- .. .-.+.++++|+.+++..
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~  156 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGG  156 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCS
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCC
Confidence            987651 11 12367788999998876

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=96.55  E-value=0.00046  Score=65.16  Aligned_cols=145  Identities=15%  Similarity=0.106  Sum_probs=64.7

Q ss_pred             cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEecccCccEEE----EECCceeE
Q 010478          245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCYRLNEIK----ISTPNLLS  318 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~~l~~l~----i~aP~L~~  318 (509)
                      ++|+.|+|.+..+.+-. ...+.+++.|+.|+|.++.- +.+..  -..+++|+.|.+.++. +..+.    -..++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  111 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDK  111 (251)
T ss_dssp             TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCcC-CccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCE
Confidence            45666666655544311 11244566666666666532 11100  0123556666665543 22211    02345555


Q ss_pred             EEEecCCcc-c-eeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEE
Q 010478          319 FKYFGPGQE-L-KLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLR  394 (509)
Q Consensus       319 L~~~g~~~~-~-~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~  394 (509)
                      |.+.+..-. . .-.+..+++|+.+++....-.   ......+..+++|+.|+|+.+. +....+  +..+++|++|+|.
T Consensus       112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ---SIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLF  187 (251)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred             EEcCCCcCCCcChhHhccCCcccEEECcCCcCC---ccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEee
Confidence            555544310 0 111344556666665542111   1111223455667777766322 211111  4455666677664


Q ss_pred             ee
Q 010478          395 VA  396 (509)
Q Consensus       395 ~~  396 (509)
                      .+
T Consensus       188 ~N  189 (251)
T 3m19_A          188 GN  189 (251)
T ss_dssp             SC
T ss_pred             CC
Confidence            44

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=96.52  E-value=0.00088  Score=71.67  Aligned_cols=124  Identities=17%  Similarity=0.150  Sum_probs=70.5

Q ss_pred             cCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHh
Q 010478          333 ENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIM  410 (509)
Q Consensus       333 ~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL  410 (509)
                      ...++++.+++....  .........+..+++|+.|+|+.+ .+....+  +..+++|++|+|..+.-....    ...+
T Consensus       466 ~~~~~L~~L~Ls~N~--~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~----~~~~  538 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLD----TFPY  538 (635)
T ss_dssp             TTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCBCC----CGGG
T ss_pred             ccchhhhhhhhhhcc--cccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCcCCCCC----hhHH
Confidence            345566666654311  111222344567788888888744 2322223  567788888888443221111    2235


Q ss_pred             hcCCCCcEEEEEEeecCCccCCccccC-c---cccCCccEEEEec--ccCCccHHHHHHHHHhcCc
Q 010478          411 KACPFLQTLIVQFDYNGYKVGRRRKVP-R---HSHQHLKLVELHG--FLGRPIDLELAFYILENAM  470 (509)
Q Consensus       411 ~~~P~Le~L~i~~~~~~~~~~~~~~~p-~---c~~~~Lk~V~i~~--f~g~~~e~~l~~~lL~na~  470 (509)
                      ..+++|+.|+++..       .+..++ .   ....+|+.+.+.|  |..+..-..|+.++-++..
T Consensus       539 ~~l~~L~~L~Ls~N-------~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~  597 (635)
T 4g8a_A          539 KCLNSLQVLDYSLN-------HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ  597 (635)
T ss_dssp             TTCTTCCEEECTTS-------CCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTT
T ss_pred             hCCCCCCEEECCCC-------cCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCC
Confidence            67888888888652       222221 1   1236899999987  6666666677777755443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=96.27  E-value=0.0059  Score=57.36  Aligned_cols=127  Identities=22%  Similarity=0.263  Sum_probs=69.8

Q ss_pred             ecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHH
Q 010478          332 IENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASI  409 (509)
Q Consensus       332 ~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~l  409 (509)
                      +.++++|+.+++....-   .......+..+++|++|.|+.+ .+....+  +..+++|++|+|..+.-....    ...
T Consensus        79 ~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~  150 (251)
T 3m19_A           79 FDDLTELGTLGLANNQL---ASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIP----AGA  150 (251)
T ss_dssp             TTTCTTCCEEECTTSCC---CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTT
T ss_pred             hccCCcCCEEECCCCcc---cccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccC----HHH
Confidence            34566666666654211   1111233466788888888743 2222222  456788888888554322111    124


Q ss_pred             hhcCCCCcEEEEEEeecCCccCCccccCc---cccCCccEEEEec--ccCCccHH-HHHHHHHhcCccCC
Q 010478          410 MKACPFLQTLIVQFDYNGYKVGRRRKVPR---HSHQHLKLVELHG--FLGRPIDL-ELAFYILENAMTLE  473 (509)
Q Consensus       410 L~~~P~Le~L~i~~~~~~~~~~~~~~~p~---c~~~~Lk~V~i~~--f~g~~~e~-~l~~~lL~na~~Le  473 (509)
                      +..+++|+.|++...       .+..++.   ....+|+.+.+.|  +.+...++ .+..++.++...+.
T Consensus       151 ~~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~  213 (251)
T 3m19_A          151 FDKLTNLQTLSLSTN-------QLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVK  213 (251)
T ss_dssp             TTTCTTCCEEECCSS-------CCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBC
T ss_pred             cCcCcCCCEEECCCC-------cCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhccccee
Confidence            567788998888763       2222221   1346788888877  44552334 45556655555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.17  E-value=0.0018  Score=64.26  Aligned_cols=79  Identities=15%  Similarity=0.173  Sum_probs=33.3

Q ss_pred             cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEecccCccEEE----EECCceeE
Q 010478          245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCYRLNEIK----ISTPNLLS  318 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~~l~~l~----i~aP~L~~  318 (509)
                      ++|++|+|++-.++.-. ...++++++|++|+|+++...+.+..  -..+++|+.+.+.++..+..+.    -..++|++
T Consensus        30 ~~l~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TTCSEEEEESCCCSEEC-TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCEEEccCCcCCCcC-HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            35555555554432100 01234555566666655543222110  0122444444444444444332    12355555


Q ss_pred             EEEecC
Q 010478          319 FKYFGP  324 (509)
Q Consensus       319 L~~~g~  324 (509)
                      |.+.+.
T Consensus       109 L~l~~n  114 (350)
T 4ay9_X          109 LLISNT  114 (350)
T ss_dssp             EEEEEE
T ss_pred             cccccc
Confidence            555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=96.16  E-value=0.0012  Score=62.92  Aligned_cols=125  Identities=17%  Similarity=0.174  Sum_probs=74.7

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFK  320 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~  320 (509)
                      +..+++|+.|+|++..+++-.-   +.+++.|+.|++.++.--..-.+..  ++|+.|.+.++. +..+.          
T Consensus        59 l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~----------  122 (263)
T 1xeu_A           59 MQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTD----------  122 (263)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSC-CSBSG----------
T ss_pred             HhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCc-cCCCh----------
Confidence            5678999999999888765322   7889999999999985322111222  789999999885 33221          


Q ss_pred             EecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeec
Q 010478          321 YFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVAT  397 (509)
Q Consensus       321 ~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~  397 (509)
                                .+..+++|+.+++....-...     ..+..+++|+.|.++.+. +...-....+++|++|++..+.
T Consensus       123 ----------~l~~l~~L~~L~Ls~N~i~~~-----~~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          123 ----------SLIHLKNLEILSIRNNKLKSI-----VMLGFLSKLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             ----------GGTTCTTCCEEECTTSCCCBC-----GGGGGCTTCCEEECTTSC-CCBCTTSTTCCCCCEEEEEEEE
T ss_pred             ----------hhcCcccccEEECCCCcCCCC-----hHHccCCCCCEEECCCCc-CcchHHhccCCCCCEEeCCCCc
Confidence                      123344444444443111111     123456777887776322 2111115667788888886654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=95.96  E-value=0.0048  Score=65.88  Aligned_cols=57  Identities=18%  Similarity=0.152  Sum_probs=31.7

Q ss_pred             CCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEeccc
Q 010478          246 YLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCY  304 (509)
Q Consensus       246 ~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~  304 (509)
                      ++++|+|++-.++.-. ..-+++++.|+.|+|++|. ++.+.-  -..+++|++|++.++.
T Consensus        53 ~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             TCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC
T ss_pred             CCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc
Confidence            6888888765443210 1124668888888888774 222211  0234566666666654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=95.94  E-value=0.0044  Score=54.22  Aligned_cols=130  Identities=15%  Similarity=0.144  Sum_probs=73.9

Q ss_pred             Cccccceeeecccce-eeE-EEecccccceEEEEecccCccEEEEECCceeEEEEecCCccceeeecCCCCceEEEEEec
Q 010478          269 CPLLDQLSVVRSETL-VSL-KVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGV  346 (509)
Q Consensus       269 CP~Le~L~L~~c~~~-~~l-~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~g~~~~~~~~~~~~~~L~~l~i~~~  346 (509)
                      .+.|++|++.+|.-. ..+ ..-..+++|+.|.+.+|. +..+                    -.+..+++|+.+++...
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--------------------~~~~~l~~L~~L~Ls~N   81 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--------------------SNLPKLPKLKKLELSEN   81 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--------------------SSCCCCSSCCEEEEESC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--------------------hhhccCCCCCEEECcCC
Confidence            577999999888632 121 111334667777777665 2222                    12344555666666542


Q ss_pred             cchhhhhhhcccccCCCCccEEEEeechhhhh--ccC-CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          347 MLTRVRNVVGPITSCFPQLKTLELDSCDELYA--QFS-EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       347 ~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~--~~~-~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      .-.   ..+..+...+++|+.|.++.+. +..  ... +..+++|++|++..+...... ......+..+|+|+.|++..
T Consensus        82 ~l~---~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A           82 RIF---GGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLN-DYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             CCC---SCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTST-THHHHHHTTCSSCCEETTEE
T ss_pred             cCc---hHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchH-HHHHHHHHhCccCcEecCCC
Confidence            111   1122334457889999998542 311  112 667889999998554322111 11234788899999998877


Q ss_pred             e
Q 010478          424 D  424 (509)
Q Consensus       424 ~  424 (509)
                      .
T Consensus       157 n  157 (168)
T 2ell_A          157 R  157 (168)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=95.86  E-value=0.0015  Score=60.40  Aligned_cols=144  Identities=15%  Similarity=0.156  Sum_probs=68.3

Q ss_pred             cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEecccCccEEEEECCceeEEEEe
Q 010478          245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYF  322 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~  322 (509)
                      +.++.|+|++..++.-.-...+..++.|+.|+|.++. ++.+.-  -..+++|+.|++.++. +..+             
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~-------------   96 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR-LENV-------------   96 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCCC-------------
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc-cCcc-------------
Confidence            4567777766554432111224567777777776654 221110  0122445555544433 1111             


Q ss_pred             cCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeecc-C
Q 010478          323 GPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATL-N  399 (509)
Q Consensus       323 g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~-~  399 (509)
                           ..-.+.++++|+.+++....-   .......+..+++|+.|.|+.+ .+....+  +..+++|++|+|..+.. .
T Consensus        97 -----~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           97 -----QHKMFKGLESLKTLMLRSNRI---TCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             -----CGGGGTTCSSCCEEECTTSCC---CCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             -----CHhHhcCCcCCCEEECCCCcC---CeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence                 011234455555555544111   1111123356777888888732 2222222  56677888888855432 2


Q ss_pred             ccCHHHHHHHhhc
Q 010478          400 RESLLGLASIMKA  412 (509)
Q Consensus       400 ~~~~~~l~~lL~~  412 (509)
                      .....++...++.
T Consensus       168 ~c~l~~l~~~~~~  180 (220)
T 2v70_A          168 NCYLAWLGEWLRK  180 (220)
T ss_dssp             SGGGHHHHHHHHH
T ss_pred             CCchHHHHHHHHh
Confidence            3444556555553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=95.72  E-value=0.0036  Score=55.37  Aligned_cols=130  Identities=13%  Similarity=0.108  Sum_probs=69.5

Q ss_pred             CCccccceeeecccceeeE-EEecccccceEEEEecccCccEEEEECCceeEEEEecCCccceeeecCCCCceEEEEEec
Q 010478          268 NCPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGV  346 (509)
Q Consensus       268 ~CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~g~~~~~~~~~~~~~~L~~l~i~~~  346 (509)
                      .++.|++|.+.++.- +.+ .+....++|+.|++.++. +..+.                    .+..+++|+.+++...
T Consensus        17 ~~~~L~~L~l~~n~l-~~i~~~~~~~~~L~~L~Ls~N~-l~~~~--------------------~l~~l~~L~~L~Ls~N   74 (176)
T 1a9n_A           17 NAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNE-IRKLD--------------------GFPLLRRLKTLLVNNN   74 (176)
T ss_dssp             CTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSC-CCEEC--------------------CCCCCSSCCEEECCSS
T ss_pred             CcCCceEEEeeCCCC-chhHHhhhcCCCCCEEECCCCC-CCccc--------------------ccccCCCCCEEECCCC
Confidence            578889999888742 222 111222377777777664 33321                    1234445555555431


Q ss_pred             cchhhhhhhcccccCCCCccEEEEeechhhh--hcc-CCCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          347 MLTRVRNVVGPITSCFPQLKTLELDSCDELY--AQF-SEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       347 ~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~--~~~-~~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      .-.   .....++..+++|+.|.++.+. +.  ..+ ....+++|++|++..+...... ..-..++..+|+|+.|++..
T Consensus        75 ~l~---~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~-~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           75 RIC---RIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKK-HYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             CCC---EECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGST-THHHHHHHHCTTCSEETTEE
T ss_pred             ccc---ccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcH-hHHHHHHHHCCccceeCCCc
Confidence            111   1111223567788888887432 21  111 1456778888888554322111 12234678889999888876


Q ss_pred             e
Q 010478          424 D  424 (509)
Q Consensus       424 ~  424 (509)
                      .
T Consensus       150 n  150 (176)
T 1a9n_A          150 V  150 (176)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=95.62  E-value=0.0019  Score=58.86  Aligned_cols=128  Identities=19%  Similarity=0.124  Sum_probs=64.2

Q ss_pred             cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEecccCccEEEEECCceeEEE
Q 010478          243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCYRLNEIKISTPNLLSFK  320 (509)
Q Consensus       243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~  320 (509)
                      -.++|+.|+|++..+++- ....+.+++.|++|++.++.- +.+.-  -..+++|+.|++.++. +..+.          
T Consensus        26 ~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~----------   92 (208)
T 2o6s_A           26 IPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQ-LQSLP----------   92 (208)
T ss_dssp             CCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCC----------
T ss_pred             CCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCCc-CCccC----------
Confidence            346788888887766532 122356788888888887642 21110  0123556666665543 11110          


Q ss_pred             EecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEe
Q 010478          321 YFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRV  395 (509)
Q Consensus       321 ~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~  395 (509)
                              ...+.++++|+.+++....-   .......+..+++|+.|.++.+. +....+  +..+++|++|+|..
T Consensus        93 --------~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~  157 (208)
T 2o6s_A           93 --------NGVFDKLTQLKELALNTNQL---QSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHD  157 (208)
T ss_dssp             --------TTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred             --------HhHhcCccCCCEEEcCCCcC---cccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecC
Confidence                    01133445555555543111   11111223456777777776332 211111  44566777777743

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=95.57  E-value=0.011  Score=62.88  Aligned_cols=73  Identities=15%  Similarity=0.068  Sum_probs=42.5

Q ss_pred             CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEEec
Q 010478          244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFG  323 (509)
Q Consensus       244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~g  323 (509)
                      +++|+.|+|++..++.  +.   ..++.|+.|+|+++.- +.+  ..-..+|+.|.+.++. +..+.-..++|+.|.+++
T Consensus        79 ~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l-~~i--p~l~~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~  149 (571)
T 3cvr_A           79 PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRL-STL--PELPASLKHLDVDNNQ-LTMLPELPALLEYINADN  149 (571)
T ss_dssp             CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCC-SCC--CCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred             cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCC-CCc--chhhcCCCEEECCCCc-CCCCCCcCccccEEeCCC
Confidence            4678888888776653  22   4577888888887742 221  1111377777777664 222221445666666665


Q ss_pred             CC
Q 010478          324 PG  325 (509)
Q Consensus       324 ~~  325 (509)
                      ..
T Consensus       150 N~  151 (571)
T 3cvr_A          150 NQ  151 (571)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=95.21  E-value=0.00033  Score=70.57  Aligned_cols=40  Identities=23%  Similarity=0.182  Sum_probs=21.9

Q ss_pred             ccccCCCCccEEEEeechhhh---hccC--CCCCCcccEEEEEee
Q 010478          357 PITSCFPQLKTLELDSCDELY---AQFS--EHELPNLTHLHLRVA  396 (509)
Q Consensus       357 ~l~~~l~~L~~L~L~~~~~~~---~~~~--~~~f~~Lk~L~L~~~  396 (509)
                      ..+...++|+.|+|+.+.--.   ..+.  ....++|++|+|..+
T Consensus       205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence            334455678888887442111   1111  345577888888444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=95.20  E-value=0.045  Score=54.07  Aligned_cols=59  Identities=15%  Similarity=0.171  Sum_probs=32.5

Q ss_pred             cccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          358 ITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       358 l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      .+..+++|+.|+|+... + ..+|...|.+|++|.+...  ..  ...+. -++..++|+.+++..
T Consensus       197 ~f~~l~~L~~LdLs~N~-l-~~lp~~~~~~L~~L~~l~~--~~--l~~lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          197 VFHGASGPVILDISRTR-I-HSLPSYGLENLKKLRARST--YN--LKKLP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             TTTTEECCSEEECTTSC-C-CCCCSSSCTTCCEEECTTC--TT--CCCCC-CTTTCCSCCEEECSC
T ss_pred             HhccCcccchhhcCCCC-c-CccChhhhccchHhhhccC--CC--cCcCC-CchhCcChhhCcCCC
Confidence            34566788888887332 2 2334445777777776222  11  10111 145677788777753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=95.16  E-value=0.012  Score=54.58  Aligned_cols=125  Identities=17%  Similarity=0.203  Sum_probs=72.4

Q ss_pred             ecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHH
Q 010478          332 IENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASI  409 (509)
Q Consensus       332 ~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~l  409 (509)
                      +.++++|+.+++....-   .......+..+++|+.|.|+.+ .+....+  +..+++|++|+|..+.-.     .+..-
T Consensus        60 ~~~l~~L~~L~L~~N~l---~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~-----~lp~~  130 (229)
T 3e6j_A           60 FDSLINLKELYLGSNQL---GALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNKLT-----ELPRG  130 (229)
T ss_dssp             TTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-----SCCTT
T ss_pred             hhCccCCcEEECCCCCC---CCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCCccc-----ccCcc
Confidence            45667777777765221   1111233467889999999843 3322222  567889999999554322     23334


Q ss_pred             hhcCCCCcEEEEEEeecCCccCCccccCc---cccCCccEEEEec--ccCCccHHH-HHHHHHhcCccC
Q 010478          410 MKACPFLQTLIVQFDYNGYKVGRRRKVPR---HSHQHLKLVELHG--FLGRPIDLE-LAFYILENAMTL  472 (509)
Q Consensus       410 L~~~P~Le~L~i~~~~~~~~~~~~~~~p~---c~~~~Lk~V~i~~--f~g~~~e~~-l~~~lL~na~~L  472 (509)
                      +..+++|+.|++...       .+..++.   ..+.+|+.+.+.|  +.+...++. +..++.++...+
T Consensus       131 ~~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~  192 (229)
T 3e6j_A          131 IERLTHLTHLALDQN-------QLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIA  192 (229)
T ss_dssp             GGGCTTCSEEECCSS-------CCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred             cccCCCCCEEECCCC-------cCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCcccc
Confidence            578899999988763       2223321   1356788888876  434443344 444555555444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=95.05  E-value=0.00045  Score=62.68  Aligned_cols=35  Identities=26%  Similarity=0.244  Sum_probs=18.3

Q ss_pred             cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecc
Q 010478          243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRS  280 (509)
Q Consensus       243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c  280 (509)
                      .+++|+.|+|++..+.+  +. .+.+++.|+.|++.++
T Consensus        46 ~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n   80 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRN   80 (198)
T ss_dssp             HTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEE
T ss_pred             cCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCC
Confidence            45556666665555544  11 2344555666665555

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=94.70  E-value=0.0049  Score=55.27  Aligned_cols=64  Identities=17%  Similarity=0.203  Sum_probs=34.5

Q ss_pred             cCCCCccEEEEeechh----hhhccC-CCCCCcccEEEE--EeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          360 SCFPQLKTLELDSCDE----LYAQFS-EHELPNLTHLHL--RVATLNRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       360 ~~l~~L~~L~L~~~~~----~~~~~~-~~~f~~Lk~L~L--~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      ...++|++|.|+.+.-    ...... ....++|++|+|  ..+..+......+...++.++.|+.|++..
T Consensus        90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~  160 (185)
T 1io0_A           90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  160 (185)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence            3456677777763321    001111 444556777777  333333333344666777777777777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=94.60  E-value=0.025  Score=55.33  Aligned_cols=33  Identities=15%  Similarity=0.288  Sum_probs=21.8

Q ss_pred             CcCCcEEEEee-E-EEChhhHHHHHhCCccccceeeecc
Q 010478          244 VKYLRSLRLFS-V-NVTGEILEFILHNCPLLDQLSVVRS  280 (509)
Q Consensus       244 ~p~Lk~L~L~~-v-~~~~~~l~~lls~CP~Le~L~L~~c  280 (509)
                      +++|++|.|.. + .+.+..    +.+|+.|++|.+.+.
T Consensus       100 ~~~L~~l~L~~~i~~I~~~a----F~~~~~L~~l~l~~n  134 (329)
T 3sb4_A          100 KQTLEKVILSEKIKNIEDAA----FKGCDNLKICQIRKK  134 (329)
T ss_dssp             CTTCCC-CBCTTCCEECTTT----TTTCTTCCEEEBCCS
T ss_pred             cCCCcEEECCccccchhHHH----hhcCcccceEEcCCC
Confidence            78888888865 2 244443    467888888888654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=94.54  E-value=0.023  Score=52.15  Aligned_cols=14  Identities=14%  Similarity=-0.038  Sum_probs=7.0

Q ss_pred             hhcCCCCcEEEEEE
Q 010478          410 MKACPFLQTLIVQF  423 (509)
Q Consensus       410 L~~~P~Le~L~i~~  423 (509)
                      +..+++|+.|++..
T Consensus       124 ~~~l~~L~~L~L~~  137 (220)
T 2v9t_B          124 FQDLHNLNLLSLYD  137 (220)
T ss_dssp             TTTCTTCCEEECCS
T ss_pred             cCCCCCCCEEECCC
Confidence            34455555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=94.41  E-value=0.054  Score=49.68  Aligned_cols=122  Identities=13%  Similarity=0.098  Sum_probs=71.5

Q ss_pred             ccceEEEEecccCccEEEE----ECCceeEEEEecCCcc--ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCcc
Q 010478          293 IQLKHLRISTCYRLNEIKI----STPNLLSFKYFGPGQE--LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLK  366 (509)
Q Consensus       293 ~~Lk~L~l~~c~~l~~l~i----~aP~L~~L~~~g~~~~--~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~  366 (509)
                      ++|+.|.+.+.. +..+.-    ..++|+.|.+.+..-.  .+-.+.++++|+.+++....-   ...-...+..+++|+
T Consensus        32 ~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l---~~l~~~~f~~l~~L~  107 (220)
T 2v9t_B           32 ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI---TELPKSLFEGLFSLQ  107 (220)
T ss_dssp             TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC---CCCCTTTTTTCTTCC
T ss_pred             cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC---CccCHhHccCCCCCC
Confidence            578888887765 444431    2478888888876510  112456778888888876321   112223446778899


Q ss_pred             EEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          367 TLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       367 ~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      .|.|+.+ .+....+  +..+++|++|+|..+.-....    ...+..+++|+.|++..
T Consensus       108 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B          108 LLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIA----KGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCS
T ss_pred             EEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEEC----HHHHhCCCCCCEEEeCC
Confidence            9988743 2222222  567788898888554322111    12345567777766654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=94.38  E-value=0.0097  Score=63.20  Aligned_cols=140  Identities=12%  Similarity=0.004  Sum_probs=68.6

Q ss_pred             CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEEec
Q 010478          244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFG  323 (509)
Q Consensus       244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~g  323 (509)
                      +++|+.|+|++..++.  +.. +.+  .|+.|+|.++.- +.+  ...+++|+.|.+.++. +..+.-..++|+.|.+++
T Consensus        99 l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls~N~l-~~l--p~~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~  169 (571)
T 3cvr_A           99 PASLEYLDACDNRLST--LPE-LPA--SLKHLDVDNNQL-TML--PELPALLEYINADNNQ-LTMLPELPTSLEVLSVRN  169 (571)
T ss_dssp             CTTCCEEECCSSCCSC--CCC-CCT--TCCEEECCSSCC-SCC--CCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred             cCCCCEEEccCCCCCC--cch-hhc--CCCEEECCCCcC-CCC--CCcCccccEEeCCCCc-cCcCCCcCCCcCEEECCC
Confidence            4667777776665543  222 222  677777776542 111  1134667777776654 332222446677777766


Q ss_pred             CCc-cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeec
Q 010478          324 PGQ-ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVAT  397 (509)
Q Consensus       324 ~~~-~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~  397 (509)
                      +.- ..+. +.  ++|+.+++..+.-..+..+...+....+.++.|.|+.+. + ..+|  ...+++|++|+|..+.
T Consensus       170 N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~-l-~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          170 NQLTFLPE-LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR-I-THIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             SCCSCCCC-CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSC-C-CCCCGGGGGSCTTEEEECCSSS
T ss_pred             CCCCCcch-hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCc-c-eecCHHHhcCCCCCEEEeeCCc
Confidence            541 1111 22  667777766522111110000111111223888887432 2 2234  4458899999985543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=94.24  E-value=0.02  Score=51.93  Aligned_cols=12  Identities=42%  Similarity=0.551  Sum_probs=5.9

Q ss_pred             cCCCCccEEEEe
Q 010478          360 SCFPQLKTLELD  371 (509)
Q Consensus       360 ~~l~~L~~L~L~  371 (509)
                      ..+++|+.|.++
T Consensus        97 ~~l~~L~~L~L~  108 (208)
T 2o6s_A           97 DKLTQLKELALN  108 (208)
T ss_dssp             TTCTTCCEEECC
T ss_pred             cCccCCCEEEcC
Confidence            344455555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=93.71  E-value=0.032  Score=51.23  Aligned_cols=12  Identities=42%  Similarity=0.423  Sum_probs=6.3

Q ss_pred             cCCCCccEEEEe
Q 010478          360 SCFPQLKTLELD  371 (509)
Q Consensus       360 ~~l~~L~~L~L~  371 (509)
                      ..+++|++|.|+
T Consensus       102 ~~l~~L~~L~Ls  113 (220)
T 2v70_A          102 KGLESLKTLMLR  113 (220)
T ss_dssp             TTCSSCCEEECT
T ss_pred             cCCcCCCEEECC
Confidence            345555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=93.68  E-value=0.025  Score=52.32  Aligned_cols=121  Identities=20%  Similarity=0.110  Sum_probs=58.4

Q ss_pred             CccccceeeecccceeeE-EEecccccceEEEEecccCccEEEE----ECCceeEEEEecCCcc-c-eeeecCCCCceEE
Q 010478          269 CPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRISTCYRLNEIKI----STPNLLSFKYFGPGQE-L-KLHIENAPQLVDI  341 (509)
Q Consensus       269 CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~c~~l~~l~i----~aP~L~~L~~~g~~~~-~-~~~~~~~~~L~~l  341 (509)
                      .+.|+.|+|+++.-.... ..-..+++|+.|.+.++. +..+..    ..++|+.|.+++..-. . .-.+..+++|+.+
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence            378999999887532210 001234778888887765 333321    2466677766655410 0 1113445566666


Q ss_pred             EEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEe
Q 010478          342 SFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRV  395 (509)
Q Consensus       342 ~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~  395 (509)
                      ++.......    +..-+..+++|+.|.|+.+ .+....+  +..+++|++|+|..
T Consensus       118 ~Ls~N~l~~----lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A          118 FMCCNKLTE----LPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             ECCSSCCCS----CCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTT
T ss_pred             eccCCcccc----cCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeC
Confidence            655421111    1111234556666666532 1211111  34455666666533

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=93.43  E-value=0.029  Score=47.77  Aligned_cols=12  Identities=17%  Similarity=0.241  Sum_probs=7.3

Q ss_pred             ccceEEEEeccc
Q 010478          293 IQLKHLRISTCY  304 (509)
Q Consensus       293 ~~Lk~L~l~~c~  304 (509)
                      ++|+.|.+.+|.
T Consensus        17 ~~l~~L~l~~n~   28 (149)
T 2je0_A           17 SDVKELVLDNSR   28 (149)
T ss_dssp             GGCSEEECTTCB
T ss_pred             ccCeEEEccCCc
Confidence            456666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=93.09  E-value=0.0084  Score=63.75  Aligned_cols=117  Identities=15%  Similarity=0.198  Sum_probs=60.9

Q ss_pred             cccceeeecccceeeEEEecccccceEEEEecccCccEEE--E-ECCceeEEEEecCC-ccceeeecCCCCceEEEEEec
Q 010478          271 LLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK--I-STPNLLSFKYFGPG-QELKLHIENAPQLVDISFRGV  346 (509)
Q Consensus       271 ~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~--i-~aP~L~~L~~~g~~-~~~~~~~~~~~~L~~l~i~~~  346 (509)
                      .|+.|+|+++.- +.+.--..+++|+.|++.++. +..+.  + ..++|+.|.+++.. ...+ .+.++++|+.+++..+
T Consensus       442 ~L~~L~Ls~n~l-~~lp~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCC-SSCCCGGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCC-CCCcCccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence            466666666532 211112234566777766654 33221  1 24667777776654 1123 4667778888877662


Q ss_pred             cchhhhhhhcccccCCCCccEEEEeechhhhhccC-----CCCCCcccEEEE
Q 010478          347 MLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS-----EHELPNLTHLHL  393 (509)
Q Consensus       347 ~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~-----~~~f~~Lk~L~L  393 (509)
                      .-....  ....+..+++|+.|.|+.+. +....+     ...+++|+.|++
T Consensus       519 ~l~~~~--~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          519 RLQQSA--AIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCSSS--TTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCC--CcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence            211110  02334568889999987432 211111     233778888753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=92.87  E-value=0.023  Score=56.55  Aligned_cols=37  Identities=22%  Similarity=0.352  Sum_probs=17.2

Q ss_pred             ecCCCCceEEEEEeccchhhhhhhcccc---cCCCCccEEEEe
Q 010478          332 IENAPQLVDISFRGVMLTRVRNVVGPIT---SCFPQLKTLELD  371 (509)
Q Consensus       332 ~~~~~~L~~l~i~~~~~~~~~~~~~~l~---~~l~~L~~L~L~  371 (509)
                      +.++++|+.+++.......+.   ..++   ..+++|+.|+|+
T Consensus       132 ~~~l~~L~~L~L~~N~l~~l~---~~~~~~~~~l~~L~~L~L~  171 (361)
T 2xot_A          132 FEDMAQLQKLYLSQNQISRFP---VELIKDGNKLPKLMLLDLS  171 (361)
T ss_dssp             TTTCTTCCEEECCSSCCCSCC---GGGTC----CTTCCEEECC
T ss_pred             hCCcccCCEEECCCCcCCeeC---HHHhcCcccCCcCCEEECC
Confidence            445566666666542111111   0111   346677777776

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=92.85  E-value=0.042  Score=54.58  Aligned_cols=120  Identities=21%  Similarity=0.217  Sum_probs=61.2

Q ss_pred             ccccceeeecccceeeEEE---ecccccceEEEEecccCccEEEE----ECCceeEEEEecCCcc-c-eeeecCCCCceE
Q 010478          270 PLLDQLSVVRSETLVSLKV---VGSAIQLKHLRISTCYRLNEIKI----STPNLLSFKYFGPGQE-L-KLHIENAPQLVD  340 (509)
Q Consensus       270 P~Le~L~L~~c~~~~~l~i---~~~~~~Lk~L~l~~c~~l~~l~i----~aP~L~~L~~~g~~~~-~-~~~~~~~~~L~~  340 (509)
                      +.|+.|+|++.. ++.+..   ...+++|+.|.+.++. +..+.-    ..++|+.|.+++..-. . ...+.++++|+.
T Consensus        39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV  116 (361)
T ss_dssp             TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence            458888888864 232211   1145788888887765 444431    2467777777665410 0 112445666776


Q ss_pred             EEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC---C---CCCCcccEEEEEee
Q 010478          341 ISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS---E---HELPNLTHLHLRVA  396 (509)
Q Consensus       341 l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~---~---~~f~~Lk~L~L~~~  396 (509)
                      +++....-.   ......+..+++|+.|.|+.+. + ..++   +   ..+++|++|+|..+
T Consensus       117 L~L~~N~i~---~~~~~~~~~l~~L~~L~L~~N~-l-~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          117 LLLYNNHIV---VVDRNAFEDMAQLQKLYLSQNQ-I-SRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             EECCSSCCC---EECTTTTTTCTTCCEEECCSSC-C-CSCCGGGTC----CTTCCEEECCSS
T ss_pred             EECCCCccc---EECHHHhCCcccCCEEECCCCc-C-CeeCHHHhcCcccCCcCCEEECCCC
Confidence            666552111   1111233456667777766321 1 1111   1   34666777776443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=92.49  E-value=0.036  Score=49.68  Aligned_cols=52  Identities=25%  Similarity=0.234  Sum_probs=28.4

Q ss_pred             cCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeecc-CccCHHHHHHHhhc
Q 010478          360 SCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATL-NRESLLGLASIMKA  412 (509)
Q Consensus       360 ~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~-~~~~~~~l~~lL~~  412 (509)
                      ..+++|+.|.|+.. .+....+  +..+++|++|+|..+.. ......++...++.
T Consensus        99 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~  153 (192)
T 1w8a_A           99 LGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRK  153 (192)
T ss_dssp             TTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHH
T ss_pred             cCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHH
Confidence            45677777777632 2222223  56677888888855432 12334455554443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=92.34  E-value=0.0028  Score=57.36  Aligned_cols=61  Identities=25%  Similarity=0.251  Sum_probs=40.0

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEeccc
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCY  304 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~  304 (509)
                      +..+++|+.|+|++..+.+  +...+..+|.|+.|++.++.- +.+.--..+++|+.|.+.++.
T Consensus        66 ~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l-~~l~~~~~l~~L~~L~l~~N~  126 (198)
T 1ds9_A           66 LSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQI-ASLSGIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             HHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEEC-CCHHHHHHHHHSSEEEESEEE
T ss_pred             cccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcC-CcCCccccCCCCCEEECCCCc
Confidence            4567899999999888873  344556678999999988742 221101123567777766553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=91.80  E-value=0.28  Score=42.85  Aligned_cols=101  Identities=18%  Similarity=0.163  Sum_probs=55.7

Q ss_pred             ccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCcccc
Q 010478          359 TSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKV  436 (509)
Q Consensus       359 ~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~  436 (509)
                      +..+++|++|.++.+ .+....+  +..+++|++|++..+.-...    ....+..+++|+.|++...       .+..+
T Consensus        48 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N-------~l~~~  115 (177)
T 2o6r_A           48 FDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSL----PNGVFDKLTQLKELALDTN-------QLKSV  115 (177)
T ss_dssp             TTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSS-------CCSCC
T ss_pred             hcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCcccc----CHHHhhCCcccCEEECcCC-------cceEe
Confidence            356677888887733 2222112  45677888888744322211    1224566788888887652       22223


Q ss_pred             Cc---cccCCccEEEEec--ccCCccHHHHHHHHHhcCcc
Q 010478          437 PR---HSHQHLKLVELHG--FLGRPIDLELAFYILENAMT  471 (509)
Q Consensus       437 p~---c~~~~Lk~V~i~~--f~g~~~e~~l~~~lL~na~~  471 (509)
                      |.   ....+|+.+.+.+  +.+...+++.+...+++...
T Consensus       116 ~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~~  155 (177)
T 2o6r_A          116 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ  155 (177)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTGG
T ss_pred             CHHHhcCCcccCEEEecCCCeeccCccHHHHHHHHhhCcc
Confidence            32   1256788888876  44544556666555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=91.44  E-value=0.13  Score=45.73  Aligned_cols=127  Identities=15%  Similarity=0.071  Sum_probs=74.2

Q ss_pred             hhhhcccccCCCCccEEEEeechhh-hh----ccC-CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEee
Q 010478          352 RNVVGPITSCFPQLKTLELDSCDEL-YA----QFS-EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDY  425 (509)
Q Consensus       352 ~~~~~~l~~~l~~L~~L~L~~~~~~-~~----~~~-~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~  425 (509)
                      ...+..++...++|++|.|+.+..+ ..    ... ....++|++|+|..+.-+......+...++..+.|+.|++....
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            3445566778889999999865233 11    111 55678899999855543344445567778888999999887631


Q ss_pred             cCCccCCccccCc--cccCCccEEEE--ecccCCccHHHHHHHHHhcCccCCcEEEEec
Q 010478          426 NGYKVGRRRKVPR--HSHQHLKLVEL--HGFLGRPIDLELAFYILENAMTLEKMVVNRT  480 (509)
Q Consensus       426 ~~~~~~~~~~~p~--c~~~~Lk~V~i--~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~  480 (509)
                      -...  ....+.+  ....+|+.+.+  .+-.-.......+.-.++..+.|+.+.+...
T Consensus       105 i~~~--g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          105 ISGS--GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CCHH--HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             CCHH--HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            0000  0000111  12357899998  4433333333334445566788999988643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=90.98  E-value=0.09  Score=47.10  Aligned_cols=53  Identities=21%  Similarity=0.243  Sum_probs=29.7

Q ss_pred             ccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeecc-CccCHHHHHHHhhc
Q 010478          359 TSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATL-NRESLLGLASIMKA  412 (509)
Q Consensus       359 ~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~-~~~~~~~l~~lL~~  412 (509)
                      +..+++|+.|.|+... +....+  +..+++|++|+|..+.. .+.+..++...++.
T Consensus        98 f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~  153 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS  153 (193)
T ss_dssp             TTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred             hCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHh
Confidence            3566778888877322 211111  45677888888855421 13445566666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=90.58  E-value=0.14  Score=45.78  Aligned_cols=96  Identities=14%  Similarity=0.092  Sum_probs=42.5

Q ss_pred             cCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC
Q 010478          360 SCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP  437 (509)
Q Consensus       360 ~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p  437 (509)
                      ..+++|+.|.|+.+. +....+  +..+++|++|+|..+.-....    ...+...++|+.|++...       .+..++
T Consensus        51 ~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~----~~~f~~l~~L~~L~L~~N-------~l~~~~  118 (193)
T 2wfh_A           51 SNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIP----PRTFDGLKSLRLLSLHGN-------DISVVP  118 (193)
T ss_dssp             GGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCC----TTTTTTCTTCCEEECCSS-------CCCBCC
T ss_pred             hcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccCEeC----HHHhCCCCCCCEEECCCC-------CCCeeC
Confidence            345556666665221 211111  445556666666333221111    113445666666666542       122222


Q ss_pred             cc---ccCCccEEEEec--ccCCccHHHHHHHHHh
Q 010478          438 RH---SHQHLKLVELHG--FLGRPIDLELAFYILE  467 (509)
Q Consensus       438 ~c---~~~~Lk~V~i~~--f~g~~~e~~l~~~lL~  467 (509)
                      .-   .+.+|+.+.+.+  +.+...-..|..++-.
T Consensus       119 ~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~  153 (193)
T 2wfh_A          119 EGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS  153 (193)
T ss_dssp             TTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred             hhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHh
Confidence            11   245666666665  3333333445554443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=89.95  E-value=0.18  Score=44.12  Aligned_cols=12  Identities=8%  Similarity=0.083  Sum_probs=6.8

Q ss_pred             ccceEEEEeccc
Q 010478          293 IQLKHLRISTCY  304 (509)
Q Consensus       293 ~~Lk~L~l~~c~  304 (509)
                      ++|+.|.+.++.
T Consensus        28 ~~l~~L~l~~n~   39 (177)
T 2o6r_A           28 SSATRLELESNK   39 (177)
T ss_dssp             TTCSEEECCSSC
T ss_pred             CCCcEEEeCCCc
Confidence            456666665543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=87.05  E-value=0.076  Score=58.13  Aligned_cols=39  Identities=10%  Similarity=0.129  Sum_probs=23.1

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccc
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSE  281 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~  281 (509)
                      +..++.|+.|+|++..+..  +..-+.+++.|+.|+|.++.
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~  258 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNS  258 (727)
T ss_dssp             --CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSC
T ss_pred             hccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCc
Confidence            4566777777777766542  11112367777777777764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=86.86  E-value=0.34  Score=43.08  Aligned_cols=27  Identities=15%  Similarity=0.046  Sum_probs=12.6

Q ss_pred             CCccEEEEec--ccCCccHHHHHHHHHhc
Q 010478          442 QHLKLVELHG--FLGRPIDLELAFYILEN  468 (509)
Q Consensus       442 ~~Lk~V~i~~--f~g~~~e~~l~~~lL~n  468 (509)
                      .+|+.+.+.+  +.+......+..++-.+
T Consensus       126 ~~L~~L~L~~N~l~c~c~l~~~~~~l~~~  154 (192)
T 1w8a_A          126 NSLTSLNLASNPFNCNCHLAWFAEWLRKK  154 (192)
T ss_dssp             TTCCEEECTTCCBCCSGGGHHHHHHHHHH
T ss_pred             CCCCEEEeCCCCccCcCcchHHHHHHHHc
Confidence            4555555544  33443334444444433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=86.22  E-value=0.51  Score=40.99  Aligned_cols=81  Identities=21%  Similarity=0.234  Sum_probs=44.2

Q ss_pred             ecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccC--ccCHHHHH
Q 010478          332 IENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLN--RESLLGLA  407 (509)
Q Consensus       332 ~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~--~~~~~~l~  407 (509)
                      +.++++|+.+++....-   .......+..+++|+.|.|+.. .+....+  +..+++|++|+|..+...  -.+..++.
T Consensus        50 ~~~l~~L~~L~Ls~N~l---~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~  125 (170)
T 3g39_A           50 FDRLTQLTRLDLDNNQL---TVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLS  125 (170)
T ss_dssp             TTTCTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHH
T ss_pred             hcCcccCCEEECCCCCc---CccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHH
Confidence            45666777777665221   1112233456788888888732 2222222  456778888888554321  11355566


Q ss_pred             HHhhcCCCC
Q 010478          408 SIMKACPFL  416 (509)
Q Consensus       408 ~lL~~~P~L  416 (509)
                      ..++..+.+
T Consensus       126 ~~l~~~~~~  134 (170)
T 3g39_A          126 RWISQHPGL  134 (170)
T ss_dssp             HHHHHCGGG
T ss_pred             HHHHhCcce
Confidence            666666544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=86.20  E-value=0.51  Score=45.80  Aligned_cols=119  Identities=10%  Similarity=0.088  Sum_probs=60.6

Q ss_pred             CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEec----ccccceEEEEecccCccEEEEECCceeEE
Q 010478          244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVG----SAIQLKHLRISTCYRLNEIKISTPNLLSF  319 (509)
Q Consensus       244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~----~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L  319 (509)
                      ..+++.+.+.+. +...++..+...|+.|+.|+|.++. ++  .|..    .|.+|+.|.+.+            +++++
T Consensus       201 ~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~-i~--~I~~~aF~~~~~L~~l~l~~------------ni~~I  264 (329)
T 3sb4_A          201 PRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTN-AT--TIPDFTFAQKKYLLKIKLPH------------NLKTI  264 (329)
T ss_dssp             GGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBC-CC--EECTTTTTTCTTCCEEECCT------------TCCEE
T ss_pred             ccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCC-cc--eecHhhhhCCCCCCEEECCc------------cccee
Confidence            344455555543 3444555556668888888887653 22  2221    234555554432            12221


Q ss_pred             EEecCCccceeeecCCCCce-EEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC---CCCCCcccEEE
Q 010478          320 KYFGPGQELKLHIENAPQLV-DISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS---EHELPNLTHLH  392 (509)
Q Consensus       320 ~~~g~~~~~~~~~~~~~~L~-~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~---~~~f~~Lk~L~  392 (509)
                              ....|.++++|+ .+.+....    ..+-...+.+|++|+.|.+.. ..+ ..++   +..+++|+++.
T Consensus       265 --------~~~aF~~~~~L~~~l~l~~~l----~~I~~~aF~~c~~L~~l~l~~-n~i-~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          265 --------GQRVFSNCGRLAGTLELPASV----TAIEFGAFMGCDNLRYVLATG-DKI-TTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             --------CTTTTTTCTTCCEEEEECTTC----CEECTTTTTTCTTEEEEEECS-SCC-CEECTTTTCTTCCCCEEE
T ss_pred             --------hHHHhhCChhccEEEEEcccc----eEEchhhhhCCccCCEEEeCC-Ccc-CccchhhhcCCcchhhhc
Confidence                    111356677777 77765411    111123346788888888852 111 1111   55666777664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=85.72  E-value=0.53  Score=47.36  Aligned_cols=11  Identities=9%  Similarity=0.054  Sum_probs=5.7

Q ss_pred             hcCCCCcEEEE
Q 010478          411 KACPFLQTLIV  421 (509)
Q Consensus       411 ~~~P~Le~L~i  421 (509)
                      ..|++|+.+.|
T Consensus       320 ~~c~~L~~l~l  330 (401)
T 4fdw_A          320 GGNRKVTQLTI  330 (401)
T ss_dssp             TTCCSCCEEEE
T ss_pred             cCCCCccEEEE
Confidence            44555555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=83.96  E-value=0.097  Score=57.25  Aligned_cols=61  Identities=25%  Similarity=0.222  Sum_probs=41.5

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE-EecccccceEEEEeccc
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK-VVGSAIQLKHLRISTCY  304 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~-i~~~~~~Lk~L~l~~c~  304 (509)
                      +..+++|+.|+|++..++  .+..-+.+++.|+.|+|+++.- +.+. --..+++|+.|.+.++.
T Consensus       243 ~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~  304 (727)
T 4b8c_D          243 IFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNM  304 (727)
T ss_dssp             GGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCC-SSCCSSGGGGTTCSEEECCSSC
T ss_pred             hcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcC-CccChhhcCCCCCCEEECCCCC
Confidence            457899999999988776  2333357899999999999863 2220 01234677777777664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=83.53  E-value=0.55  Score=49.65  Aligned_cols=170  Identities=19%  Similarity=0.187  Sum_probs=84.8

Q ss_pred             ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccce-------------eeE-EEecccccceEEEEecccC--
Q 010478          242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETL-------------VSL-KVVGSAIQLKHLRISTCYR--  305 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~-------------~~l-~i~~~~~~Lk~L~l~~c~~--  305 (509)
                      ..++.|+.|+|++-.+.  .+..-+..|+.|++|++.++..+             +.. ..-..+++|+.|+...+..  
T Consensus       346 ~~~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH--hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            45678888888765543  46666778888888887655310             000 0001123444444111100  


Q ss_pred             -ccE-------E-EEECCceeEEEEecCCc-cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechh
Q 010478          306 -LNE-------I-KISTPNLLSFKYFGPGQ-ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDE  375 (509)
Q Consensus       306 -l~~-------l-~i~aP~L~~L~~~g~~~-~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~  375 (509)
                       +..       + .+....|+.|.+++..- ..+ .+.++++|+.+++....-.    .+..-+..+++|+.|.|+.+. 
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~l~----~lp~~~~~l~~L~~L~Ls~N~-  497 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDNA-  497 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC----CCCGGGGGCTTCCEEECCSSC-
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCCCc-CccccccCcEeecCccccc----ccchhhhcCCCCCEEECCCCC-
Confidence             000       0 01123466666665541 122 2556667777776652211    111233566777777776322 


Q ss_pred             hhhccC-CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          376 LYAQFS-EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       376 ~~~~~~-~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      + ..+| +..+++|++|+|..+.-....   ....+..+++|+.|++..
T Consensus       498 l-~~lp~l~~l~~L~~L~Ls~N~l~~~~---~p~~l~~l~~L~~L~L~~  542 (567)
T 1dce_A          498 L-ENVDGVANLPRLQELLLCNNRLQQSA---AIQPLVSCPRLVLLNLQG  542 (567)
T ss_dssp             C-CCCGGGTTCSSCCEEECCSSCCCSSS---TTGGGGGCTTCCEEECTT
T ss_pred             C-CCCcccCCCCCCcEEECCCCCCCCCC---CcHHHhcCCCCCEEEecC
Confidence            2 1233 556677777777443221110   034456677777777765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=83.41  E-value=1.5  Score=37.99  Aligned_cols=78  Identities=18%  Similarity=0.148  Sum_probs=35.8

Q ss_pred             CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCcc---ccCCccEEEEec--ccCCc
Q 010478          382 EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRH---SHQHLKLVELHG--FLGRP  456 (509)
Q Consensus       382 ~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c---~~~~Lk~V~i~~--f~g~~  456 (509)
                      +..+++|++|+|..+.-....    ...+...++|+.|++...       .+..++.-   .+.+|+.+.+.+  +.+..
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~l~----~~~f~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           50 FDRLTQLTRLDLDNNQLTVLP----AGVFDKLTQLTQLSLNDN-------QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             TTTCTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             hcCcccCCEEECCCCCcCccC----hhhccCCCCCCEEECCCC-------ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            445556666666333211111    123455666666666542       22222211   245666666665  33443


Q ss_pred             cHHHHHHHHHhcCc
Q 010478          457 IDLELAFYILENAM  470 (509)
Q Consensus       457 ~e~~l~~~lL~na~  470 (509)
                      .++..+...++..+
T Consensus       119 ~~l~~l~~~l~~~~  132 (170)
T 3g39_A          119 SDILYLSRWISQHP  132 (170)
T ss_dssp             GGGHHHHHHHHHCG
T ss_pred             hhHHHHHHHHHhCc
Confidence            34555444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=81.37  E-value=1.2  Score=38.74  Aligned_cols=96  Identities=15%  Similarity=0.106  Sum_probs=44.5

Q ss_pred             CceeEEEEecCCc-c-ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCccc
Q 010478          314 PNLLSFKYFGPGQ-E-LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLT  389 (509)
Q Consensus       314 P~L~~L~~~g~~~-~-~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk  389 (509)
                      ++|+.|.+++..- . .+-.+.++++|+.+++.....   .......+..+++|+.|.|+.. .+....+  +..+++|+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~  108 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL---TAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLT  108 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCS
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC---CccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCC
Confidence            4455555544431 0 111245566666666655211   1111123355677777777632 2211111  44567777


Q ss_pred             EEEEEeeccC--ccCHHHHHHHhhcC
Q 010478          390 HLHLRVATLN--RESLLGLASIMKAC  413 (509)
Q Consensus       390 ~L~L~~~~~~--~~~~~~l~~lL~~~  413 (509)
                      +|+|..+...  ..+..++..+++.-
T Consensus       109 ~L~L~~N~~~c~~~~~~~l~~~~~~~  134 (174)
T 2r9u_A          109 HIYLYNNPWDCECRDIMYLRNWVADH  134 (174)
T ss_dssp             EEECCSSCBCTTBGGGHHHHHHHHHC
T ss_pred             EEEeCCCCcccccccHHHHHHHHHhc
Confidence            7777544321  11344455555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	509
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-04
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-04
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.001

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVL 154
           DL++ LP +I + I + L  ++   +  +S  W  +   +T L
Sbjct: 4   DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYL 147
           D +SLLP ++ + ++S L  K+  + +     W+ L
Sbjct: 17  DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 117 LPDDILINIISRLPLKEAAKTSVLSSRWKYL 147
           LPD++L+ I S L L E  K S +  RW  L
Sbjct: 4   LPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	509
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.07
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.92
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.88
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.53
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.49
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.11
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.89
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.5
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.5
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.24
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.18
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.07
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.02
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	96.94
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.87
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	96.74
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	96.62
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.53
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.33
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.08
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	95.86
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.19
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.11
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	94.43
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	94.39
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	94.12
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.01
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	93.46
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	93.43
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	91.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	91.04
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	90.61
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	90.12
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	90.07
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	88.94
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	86.1
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	85.77
d2ifga3	156	High affinity nerve growth factor receptor, N-term	85.08
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	83.63
d2ifga3	156	High affinity nerve growth factor receptor, N-term	82.09

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4.8e-12  Score=121.34  Aligned_cols=83  Identities=18%  Similarity=0.141  Sum_probs=55.8

Q ss_pred             cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccccee-eEEEecccccceEEEEecccCccE-----EEEECCce
Q 010478          243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLV-SLKVVGSAIQLKHLRISTCYRLNE-----IKISTPNL  316 (509)
Q Consensus       243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~-~l~i~~~~~~Lk~L~l~~c~~l~~-----l~i~aP~L  316 (509)
                      ...+|++|+|+++.++++.+..++++||+|++|++.+|.... .+..-..+++|++|++.+|..+..     +.-.+|+|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            346788888888888888888888888999999888885211 111112347788888888875432     11235677


Q ss_pred             eEEEEecCC
Q 010478          317 LSFKYFGPG  325 (509)
Q Consensus       317 ~~L~~~g~~  325 (509)
                      ++|.++++.
T Consensus       124 ~~L~ls~c~  132 (284)
T d2astb2         124 DELNLSWCF  132 (284)
T ss_dssp             CEEECCCCT
T ss_pred             ccccccccc
Confidence            777666653

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3.9e-10  Score=73.70  Aligned_cols=35  Identities=40%  Similarity=0.538  Sum_probs=32.8

Q ss_pred             CCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhhhc
Q 010478          114 MSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLW  148 (509)
Q Consensus       114 is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~lw  148 (509)
                      ++.||+||+.+||++||.+|.++++.|||+|+++-
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999863

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=5.4e-11  Score=113.80  Aligned_cols=169  Identities=19%  Similarity=0.286  Sum_probs=96.6

Q ss_pred             ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE---EEecccccceEEEEecccCccE------EEEE
Q 010478          242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL---KVVGSAIQLKHLRISTCYRLNE------IKIS  312 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l---~i~~~~~~Lk~L~l~~c~~l~~------l~i~  312 (509)
                      ..+++|++|+|.++.+++..+.. +..||+|++|++++|.+++..   .+...+++|++|++.+|..+.+      +.-.
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            45667777777766666655544 345667777777776655421   2233456677777766654321      1112


Q ss_pred             CCceeEEEEecCCcc-----ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhh-hccC-CCCC
Q 010478          313 TPNLLSFKYFGPGQE-----LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELY-AQFS-EHEL  385 (509)
Q Consensus       313 aP~L~~L~~~g~~~~-----~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~-~~~~-~~~f  385 (509)
                      +|+|+.|.+.|+...     ......++|+|+++++..... ..+..+.. +..+++|++|.|+.|..+. ..+. ...+
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~-itd~~~~~-l~~~~~L~~L~L~~C~~i~~~~l~~L~~~  224 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM-LKNDCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGEI  224 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT-CCGGGGGG-GGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccC-CCchhhhh-hcccCcCCEEECCCCCCCChHHHHHHhcC
Confidence            466777776665310     111234566777766654110 11222222 3467889999998777662 2222 5677


Q ss_pred             CcccEEEEEeeccCccCHHHHHHHhhcCCCCc
Q 010478          386 PNLTHLHLRVATLNRESLLGLASIMKACPFLQ  417 (509)
Q Consensus       386 ~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le  417 (509)
                      ++|++|++..+    ..+.++..+.+.+|+|+
T Consensus       225 ~~L~~L~l~~~----~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         225 PTLKTLQVFGI----VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             TTCCEEECTTS----SCTTCHHHHHHHSTTSE
T ss_pred             CCCCEEeeeCC----CCHHHHHHHHHhCcccc
Confidence            88999888432    33445777788888876

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2e-08  Score=79.87  Aligned_cols=37  Identities=27%  Similarity=0.558  Sum_probs=35.4

Q ss_pred             cccCCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhhh
Q 010478          111 EDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYL  147 (509)
Q Consensus       111 ~D~is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~l  147 (509)
                      .|.|+.||+||+.+||++|+.+|+++++.|||+|+.+
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999999999999999999985

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=1.1e-08  Score=81.20  Aligned_cols=39  Identities=23%  Similarity=0.459  Sum_probs=35.8

Q ss_pred             cccCCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhhhcc
Q 010478          111 EDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWT  149 (509)
Q Consensus       111 ~D~is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~lw~  149 (509)
                      .|.|+.||+||+.+||++|+.+|.++++.|||+|+++..
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999987543

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=3.7e-07  Score=74.37  Aligned_cols=37  Identities=30%  Similarity=0.534  Sum_probs=34.1

Q ss_pred             cccCCCCc----HHHHHHHHcCCChhhHHHHHhhhhhhhhh
Q 010478          111 EDLMSLLP----DDILINIISRLPLKEAAKTSVLSSRWKYL  147 (509)
Q Consensus       111 ~D~is~LP----deiL~~ILs~Lp~~d~~rts~lSrRWr~l  147 (509)
                      .|.|+.||    |||+.+|||||+.+|.++++.|||+|+++
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            47899999    69999999999999999999999999873

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.89  E-value=1.8e-06  Score=78.40  Aligned_cols=60  Identities=15%  Similarity=0.176  Sum_probs=34.7

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEeccc
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCY  304 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~  304 (509)
                      +..+++|++|+|++..+.+-.  . +..++.|+.|.+.++.. +.+.--..+++|+.|.+.+|.
T Consensus        59 l~~l~~L~~L~ls~n~i~~~~--~-l~~l~~l~~l~~~~n~~-~~i~~l~~l~~L~~l~l~~~~  118 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQ  118 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCC-SCCGGGTTCTTCCEEECTTSC
T ss_pred             HhcCCCCcEeecCCceeeccc--c-ccccccccccccccccc-ccccccccccccccccccccc
Confidence            456777787777776665421  1 56677777777776642 211111234566666666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.71  E-value=4.5e-06  Score=74.91  Aligned_cols=57  Identities=21%  Similarity=0.219  Sum_probs=29.8

Q ss_pred             cCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          360 SCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       360 ~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      ..+++|+.+.+..+ .+....++..+++|++|+|..+.-.  +   +. -+..+++|+.|+|..
T Consensus       153 ~~l~~L~~l~l~~n-~l~~i~~l~~l~~L~~L~Ls~N~i~--~---l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         153 SRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNHIS--D---LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCC--B---CG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccccccc-cccccccccCCCCCCEEECCCCCCC--C---Ch-hhcCCCCCCEEEccC
Confidence            34666777777633 2211112456677777777433211  1   11 255667777777653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.70  E-value=5.1e-06  Score=73.86  Aligned_cols=35  Identities=14%  Similarity=0.082  Sum_probs=16.0

Q ss_pred             cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecc
Q 010478          243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRS  280 (509)
Q Consensus       243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c  280 (509)
                      .+++|++|+|++..+++-.  . +.++|.|+.|.+.++
T Consensus        60 ~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNN   94 (199)
T ss_dssp             GCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSS
T ss_pred             cCCCcCcCccccccccCcc--c-ccCCccccccccccc
Confidence            4455555555544443311  1 344555555555444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.50  E-value=1.5e-05  Score=71.28  Aligned_cols=142  Identities=18%  Similarity=0.144  Sum_probs=85.9

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE--EECCceeE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK--ISTPNLLS  318 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~--i~aP~L~~  318 (509)
                      +..+++|++|+|++..+++-.  . ++.++.|+.|++.++. ++.+.--..+++|+.|.+.++.. ..+.  ...|+|+.
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~--~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~~~~-~~~~~l~~l~~l~~  138 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNGI-SDINGLVHLPQLES  138 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSCC-CCCGGGGGCTTCCE
T ss_pred             HhhCCCCCEEeCCCccccCcc--c-cccCcccccccccccc-ccccccccccccccccccccccc-cccccccccccccc
Confidence            346778888888877766522  1 4567888888887764 22221112346778888777652 1111  13467777


Q ss_pred             EEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC-CCCCCcccEEEEE
Q 010478          319 FKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS-EHELPNLTHLHLR  394 (509)
Q Consensus       319 L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~-~~~f~~Lk~L~L~  394 (509)
                      +.+.+..-........+++|+.+.+........    .. +..+++|+.|.|+.+ .+. .++ +..+++|++|+|.
T Consensus       139 l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i----~~-l~~l~~L~~L~Ls~N-~i~-~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDI----VP-LAGLTKLQNLYLSKN-HIS-DLRALAGLKNLDVLELF  208 (210)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC----GG-GTTCTTCCEEECCSS-CCC-BCGGGTTCTTCSEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccc----cc-ccCCCCCCEEECCCC-CCC-CChhhcCCCCCCEEEcc
Confidence            777655411122345678888888776322111    11 367899999999854 332 234 7788999999984

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=5e-05  Score=70.37  Aligned_cols=189  Identities=25%  Similarity=0.204  Sum_probs=104.3

Q ss_pred             cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEEecC
Q 010478          245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGP  324 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~g~  324 (509)
                      ++|+.|+|++-.++.-. ...+.++++|++|+|.++. ++.+.....+++|+.|++.++. +..                
T Consensus        31 ~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~Ls~N~-l~~----------------   91 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ-LQS----------------   91 (266)
T ss_dssp             TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC-CSS----------------
T ss_pred             cCCCEEECcCCcCCCcC-HHHhhcccccccccccccc-cccccccccccccccccccccc-ccc----------------
Confidence            57999999877654311 1235678999999999874 4444444455777777777654 211                


Q ss_pred             CccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccC
Q 010478          325 GQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRES  402 (509)
Q Consensus       325 ~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~  402 (509)
                         ....+.++++|+.+++......   .........+.+++.|.+..+ .+....+  ...+++|+.|++..+.-....
T Consensus        92 ---~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          92 ---LPLLGQTLPALTVLDVSFNRLT---SLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             ---CCCCTTTCTTCCEEECCSSCCC---CCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             ---cccccccccccccccccccccc---eeecccccccccccccccccc-ccceeccccccccccchhcccccccccccC
Confidence               1112344555555555441111   111123345667777777632 2211111  445677777777443221111


Q ss_pred             HHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc--cccCCccEEEEec--ccCCccHHHHHHHHHhcCc
Q 010478          403 LLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR--HSHQHLKLVELHG--FLGRPIDLELAFYILENAM  470 (509)
Q Consensus       403 ~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~--c~~~~Lk~V~i~~--f~g~~~e~~l~~~lL~na~  470 (509)
                          ...+...++|+.|++..       +.+..+|+  ....+|+.+.+.|  +.....-..|.+++-+++.
T Consensus       165 ----~~~~~~l~~L~~L~Ls~-------N~L~~lp~~~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl~~~~~  225 (266)
T d1p9ag_         165 ----AGLLNGLENLDTLLLQE-------NSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE  225 (266)
T ss_dssp             ----TTTTTTCTTCCEEECCS-------SCCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTGG
T ss_pred             ----ccccccccccceeeccc-------CCCcccChhHCCCCCCCEEEecCCCCCCCcchHHHHHHHHhccc
Confidence                23456778888888865       23334442  2357788888887  4444444566666655544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.45  E-value=1.3e-05  Score=71.14  Aligned_cols=160  Identities=13%  Similarity=0.204  Sum_probs=101.7

Q ss_pred             cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE-E-ECCceeEEE
Q 010478          243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK-I-STPNLLSFK  320 (509)
Q Consensus       243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~-i-~aP~L~~L~  320 (509)
                      .+++|+.|++.+..+++  +. -++.+++|+.|+++++. ++.+.--..+++|+.|.+.++.. ..+. + ..++|+.+.
T Consensus        38 ~l~~l~~L~l~~~~i~~--l~-~l~~l~nL~~L~Ls~N~-l~~~~~l~~l~~L~~L~l~~n~~-~~~~~l~~l~~L~~L~  112 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQI-ADITPLANLTNLTGLT  112 (199)
T ss_dssp             HHTTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEE
T ss_pred             HhcCCCEEECCCCCCCC--cc-ccccCCCcCcCcccccc-ccCcccccCCccccccccccccc-cccccccccccccccc
Confidence            46788888888777654  11 14678999999999874 33221123457899999887752 2221 1 367888888


Q ss_pred             EecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCc
Q 010478          321 YFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNR  400 (509)
Q Consensus       321 ~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~  400 (509)
                      +.+........+..+++|+.+++.......    + .-+..+++++.|.+..+ .+...-++..+++|++|+|..+....
T Consensus       113 l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~----~-~~l~~~~~L~~L~l~~n-~l~~l~~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         113 LFNNQITDIDPLKNLTNLNRLELSSNTISD----I-SALSGLTSLQQLNFSSN-QVTDLKPLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCCC----C-GGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccccccchhhhhHHhhhhhhhhcc----c-ccccccccccccccccc-cccCCccccCCCCCCEEECCCCCCCC
Confidence            877663222246678889988887622111    1 12357889999998743 23222126778999999995543222


Q ss_pred             cCHHHHHHHhhcCCCCcEE
Q 010478          401 ESLLGLASIMKACPFLQTL  419 (509)
Q Consensus       401 ~~~~~l~~lL~~~P~Le~L  419 (509)
                           + ..+..+++||+|
T Consensus       187 -----i-~~l~~L~~L~~L  199 (199)
T d2omxa2         187 -----I-SVLAKLTNLESL  199 (199)
T ss_dssp             -----C-GGGGGCTTCSEE
T ss_pred             -----C-ccccCCCCCCcC
Confidence                 1 236788999886

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.24  E-value=1.8e-05  Score=76.35  Aligned_cols=268  Identities=15%  Similarity=0.046  Sum_probs=126.1

Q ss_pred             ChhhHHHHHHHHhc-cCcEEEEEEecCCCcceeeecccccccccCCccCcCCcEEEEeeEEEC---h------hhHHHHH
Q 010478          197 HESEITNWVYSALS-KRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSVNVT---G------EILEFIL  266 (509)
Q Consensus       197 ~~~~~~~wl~~a~~-~~v~~L~L~~~~~~~~~~~p~~~~~~L~~~~~~~p~Lk~L~L~~v~~~---~------~~l~~ll  266 (509)
                      ....+..++..... ..+++|+|+...      +....+..|.......++|+.|++.++...   +      ..+...+
T Consensus        16 ~~e~~~~l~~~L~~~~~l~~L~Ls~n~------i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l   89 (344)
T d2ca6a1          16 TTEDEKSVFAVLLEDDSVKEIVLSGNT------IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL   89 (344)
T ss_dssp             CSHHHHTTSHHHHHCSCCCEEECTTSE------ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhCCCCCEEECcCCc------CCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHH
Confidence            33455555555443 467777664211      110001111112445678888888765422   1      1244556


Q ss_pred             hCCccccceeeeccccee----eE-EEecccccceEEEEecccCccEEEE--ECCceeEEEEecCCccceeeecCCCCce
Q 010478          267 HNCPLLDQLSVVRSETLV----SL-KVVGSAIQLKHLRISTCYRLNEIKI--STPNLLSFKYFGPGQELKLHIENAPQLV  339 (509)
Q Consensus       267 s~CP~Le~L~L~~c~~~~----~l-~i~~~~~~Lk~L~l~~c~~l~~l~i--~aP~L~~L~~~g~~~~~~~~~~~~~~L~  339 (509)
                      ..|+.|++|+|.+|..-.    .+ ..-..+++|++|.+.+|.. .....  -+..|..+.       ........+.|+
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l-~~~~~~~l~~~l~~~~-------~~~~~~~~~~L~  161 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELA-------VNKKAKNAPPLR  161 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHH-------HHHHHHTCCCCC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccc-cccccccccccccccc-------cccccccCcccc
Confidence            678888888887764211    01 0111235677777766541 10000  000000000       000112334455


Q ss_pred             EEEEEecc-chhhhhhhcccccCCCCccEEEEeechh----hhhcc-C-CCCCCcccEEEEEeeccCccCHHHHHHHhhc
Q 010478          340 DISFRGVM-LTRVRNVVGPITSCFPQLKTLELDSCDE----LYAQF-S-EHELPNLTHLHLRVATLNRESLLGLASIMKA  412 (509)
Q Consensus       340 ~l~i~~~~-~~~~~~~~~~l~~~l~~L~~L~L~~~~~----~~~~~-~-~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~  412 (509)
                      .+.+.... .+.....+...+..++.++.|.+..+.-    +...+ . ...+++|++|+|..+..+......+...+..
T Consensus       162 ~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~  241 (344)
T d2ca6a1         162 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS  241 (344)
T ss_dssp             EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred             eeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccc
Confidence            44444311 1111112334445667888888874321    11111 2 5677888888885443222333446677888


Q ss_pred             CCCCcEEEEEEeecCCc-cCCc-cccCccccCCccEEEEecccCCc-cHHHHHHHHHhcCccCCcEEEE
Q 010478          413 CPFLQTLIVQFDYNGYK-VGRR-RKVPRHSHQHLKLVELHGFLGRP-IDLELAFYILENAMTLEKMVVN  478 (509)
Q Consensus       413 ~P~Le~L~i~~~~~~~~-~~~~-~~~p~c~~~~Lk~V~i~~f~g~~-~e~~l~~~lL~na~~Le~m~I~  478 (509)
                      +|+|+.|.+....-... ...+ ..+..+....|+++.|.+-.-.. .-..+++.+..+.+.|+++.+.
T Consensus       242 ~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~  310 (344)
T d2ca6a1         242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN  310 (344)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred             cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECC
Confidence            88888888754310000 0000 01112334668888887643222 2234555555577888877764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.18  E-value=5.4e-05  Score=68.27  Aligned_cols=143  Identities=15%  Similarity=0.134  Sum_probs=76.5

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE-EECCceeEE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK-ISTPNLLSF  319 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~-i~aP~L~~L  319 (509)
                      +..+++|+.|.+.+..+++-  . -+.+++.|+.|.+.+|.......+ ...+.++.+.+..+....... ...++|+.|
T Consensus        81 l~~l~~l~~l~~~~n~~~~i--~-~l~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L  156 (227)
T d1h6ua2          81 LKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDLTSTQITDVTPL-AGLSNLQVLYLDLNQITNISPLAGLTNLQYL  156 (227)
T ss_dssp             GTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEECTTSCCCCCGGG-TTCTTCCEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred             cccccccccccccccccccc--c-cccccccccccccccccccccchh-ccccchhhhhchhhhhchhhhhccccccccc
Confidence            56789999999988766542  2 256899999999988864321111 123566666665554111000 123445555


Q ss_pred             EEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC-CCCCCcccEEEEEeecc
Q 010478          320 KYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS-EHELPNLTHLHLRVATL  398 (509)
Q Consensus       320 ~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~-~~~f~~Lk~L~L~~~~~  398 (509)
                      .+.+..-.....                           +..+++|+.|+++.+ .+.. ++ +..+++|++|+|..+..
T Consensus       157 ~l~~n~~~~~~~---------------------------l~~l~~L~~L~Ls~n-~l~~-l~~l~~l~~L~~L~Ls~N~l  207 (227)
T d1h6ua2         157 SIGNAQVSDLTP---------------------------LANLSKLTTLKADDN-KISD-ISPLASLPNLIEVHLKNNQI  207 (227)
T ss_dssp             ECCSSCCCCCGG---------------------------GTTCTTCCEEECCSS-CCCC-CGGGGGCTTCCEEECTTSCC
T ss_pred             cccccccccchh---------------------------hcccccceecccCCC-ccCC-ChhhcCCCCCCEEECcCCcC
Confidence            444433100011                           245666777776643 2211 22 45566777777743321


Q ss_pred             CccCHHHHHHHhhcCCCCcEEEEE
Q 010478          399 NRESLLGLASIMKACPFLQTLIVQ  422 (509)
Q Consensus       399 ~~~~~~~l~~lL~~~P~Le~L~i~  422 (509)
                      ..     +. -++.+++|+.|+|.
T Consensus       208 t~-----i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         208 SD-----VS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             CB-----CG-GGTTCTTCCEEEEE
T ss_pred             CC-----Cc-ccccCCCCCEEEee
Confidence            11     11 25677777777764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.07  E-value=0.00011  Score=71.10  Aligned_cols=186  Identities=13%  Similarity=0.127  Sum_probs=98.8

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE-E-ECCceeE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK-I-STPNLLS  318 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~-i-~aP~L~~  318 (509)
                      ...+++++.|.+++..+++-.   -...++.|++|.+.++.. +.+..-..+++|+.|.+.++. +..+. + ..|+|++
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~---~~~~~~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~  267 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTE  267 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCG---GGGGCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSE
T ss_pred             cccccccceeeccCCccCCCC---cccccCCCCEEECCCCCC-CCcchhhcccccchhccccCc-cCCCCcccccccCCE
Confidence            456788888888876655421   135578888888887742 222111234678888877765 22221 1 2567777


Q ss_pred             EEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeecc
Q 010478          319 FKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATL  398 (509)
Q Consensus       319 L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~  398 (509)
                      |.+++..-.....+...+.++.+.+........     .-...+++++.|.++.+ .+....++..+++|++|++..+.-
T Consensus       268 L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~-----~~~~~~~~l~~L~ls~n-~l~~l~~l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         268 LKLGANQISNISPLAGLTALTNLELNENQLEDI-----SPISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC-----GGGGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSCC
T ss_pred             eeccCcccCCCCccccccccccccccccccccc-----cccchhcccCeEECCCC-CCCCCcccccCCCCCEEECCCCCC
Confidence            777655411111234455555555443111100     11345677777777633 222222256677888888744321


Q ss_pred             CccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC-ccccCCccEEEEe
Q 010478          399 NRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP-RHSHQHLKLVELH  450 (509)
Q Consensus       399 ~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p-~c~~~~Lk~V~i~  450 (509)
                      ..     +. -+..+|+|+.|++...       .+..++ -..+.+|+.+.|.
T Consensus       342 ~~-----l~-~l~~l~~L~~L~l~~N-------~l~~l~~l~~l~~L~~L~L~  381 (384)
T d2omza2         342 SD-----VS-SLANLTNINWLSAGHN-------QISDLTPLANLTRITQLGLN  381 (384)
T ss_dssp             CC-----CG-GGGGCTTCCEEECCSS-------CCCBCGGGTTCTTCSEEECC
T ss_pred             CC-----Ch-hHcCCCCCCEEECCCC-------cCCCChhhccCCCCCEeeCC
Confidence            11     11 2566788888877652       222222 1234567766654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.02  E-value=8.2e-05  Score=72.09  Aligned_cols=164  Identities=15%  Similarity=0.154  Sum_probs=102.8

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE--EECCceeE
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK--ISTPNLLS  318 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~--i~aP~L~~  318 (509)
                      ....++|++|++.+..+++-.   .+..++.|+.|.+.++... .+.--..+++|+.|.+.++. +..+.  ...+.++.
T Consensus       215 ~~~~~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~  289 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQ-ISNISPLAGLTALTN  289 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSE
T ss_pred             ccccCCCCEEECCCCCCCCcc---hhhcccccchhccccCccC-CCCcccccccCCEeeccCcc-cCCCCcccccccccc
Confidence            456789999999888776532   2567899999999887532 21112335788999887665 22211  12456666


Q ss_pred             EEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC-CCCCCcccEEEEEeec
Q 010478          319 FKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS-EHELPNLTHLHLRVAT  397 (509)
Q Consensus       319 L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~-~~~f~~Lk~L~L~~~~  397 (509)
                      +...+..-.....+..+++++.+++.........     -+..+++|++|.++.+. + ..++ +..+++|++|++..+.
T Consensus       290 l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~-----~l~~l~~L~~L~L~~n~-l-~~l~~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         290 LELNENQLEDISPISNLKNLTYLTLYFNNISDIS-----PVSSLTKLQRLFFANNK-V-SDVSSLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             EECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG-----GGGGCTTCCEEECCSSC-C-CCCGGGGGCTTCCEEECCSSC
T ss_pred             ccccccccccccccchhcccCeEECCCCCCCCCc-----ccccCCCCCEEECCCCC-C-CCChhHcCCCCCCEEECCCCc
Confidence            6665544111223566788888877763221111     13678999999998653 3 2233 6678899999995542


Q ss_pred             cCccCHHHHHHHhhcCCCCcEEEEE
Q 010478          398 LNRESLLGLASIMKACPFLQTLIVQ  422 (509)
Q Consensus       398 ~~~~~~~~l~~lL~~~P~Le~L~i~  422 (509)
                      -.  +   +.. +..+|+|+.|+|+
T Consensus       363 l~--~---l~~-l~~l~~L~~L~L~  381 (384)
T d2omza2         363 IS--D---LTP-LANLTRITQLGLN  381 (384)
T ss_dssp             CC--B---CGG-GTTCTTCSEEECC
T ss_pred             CC--C---Chh-hccCCCCCEeeCC
Confidence            22  1   222 6789999999885

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=8.8e-05  Score=63.31  Aligned_cols=38  Identities=16%  Similarity=0.130  Sum_probs=23.3

Q ss_pred             ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccc
Q 010478          242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSE  281 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~  281 (509)
                      .....|+.|+|++..++.  +..+...++.|+.|+|+++.
T Consensus        15 ~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~   52 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE   52 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC
T ss_pred             cCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCC
Confidence            345567777777766543  12334566777777777763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00097  Score=60.00  Aligned_cols=195  Identities=13%  Similarity=0.126  Sum_probs=99.6

Q ss_pred             CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEecccCccEEE----EECCcee
Q 010478          244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCYRLNEIK----ISTPNLL  317 (509)
Q Consensus       244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~~l~~l~----i~aP~L~  317 (509)
                      ++++++|+|++..++.-. ...+.++++|++|+|.++.....+..  -..++.++.|.+..+.++..+.    -..|+|+
T Consensus        28 ~~~l~~L~Ls~n~i~~l~-~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~  106 (242)
T d1xwdc1          28 PRNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  106 (242)
T ss_dssp             CSCCSEEEEESCCCCEEC-TTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCC
T ss_pred             CCCCCEEECcCCcCCccC-hhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccc
Confidence            357999999876554210 11257789999999988865432211  1234788888888776655443    3478999


Q ss_pred             EEEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCC-CCccEEEEeechhhhhccCCCCC--CcccEEEEE
Q 010478          318 SFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCF-PQLKTLELDSCDELYAQFSEHEL--PNLTHLHLR  394 (509)
Q Consensus       318 ~L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l-~~L~~L~L~~~~~~~~~~~~~~f--~~Lk~L~L~  394 (509)
                      .+.+.+..-...-......++..+.+...........-...+.++ ..++.|.+.. ..+ ..++...|  .+++++.. 
T Consensus       107 ~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n~l-~~i~~~~~~~~~l~~~~~-  183 (242)
T d1xwdc1         107 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGI-QEIHNCAFNGTQLDELNL-  183 (242)
T ss_dssp             EEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCC-CEECTTTTTTCCEEEEEC-
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccc-ccc-cccccccccchhhhcccc-
Confidence            999887652111123334455555544311111111111111222 3566676652 222 11221223  33333332 


Q ss_pred             eeccCccCHHHH-HHHhhcCCCCcEEEEEEeecCCccCCccccCccccCCccEEEEecc
Q 010478          395 VATLNRESLLGL-ASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGF  452 (509)
Q Consensus       395 ~~~~~~~~~~~l-~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V~i~~f  452 (509)
                       ...  .....+ ...++.+|+|+.|++..       ..+..+|...+.+|+.++..+.
T Consensus       184 -l~~--n~l~~l~~~~f~~l~~L~~L~Ls~-------N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         184 -SDN--NNLEELPNDVFHGASGPVILDISR-------TRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             -TTC--TTCCCCCTTTTTTSCCCSEEECTT-------SCCCCCCSSSCTTCCEEESSSE
T ss_pred             -ccc--cccccccHHHhcCCCCCCEEECCC-------CcCCccCHHHHcCCcccccCcC
Confidence             111  111112 23467889999998854       2234445445566666655443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00014  Score=61.94  Aligned_cols=37  Identities=11%  Similarity=0.099  Sum_probs=20.1

Q ss_pred             ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccc
Q 010478          242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSE  281 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~  281 (509)
                      ..++.|+.|+|++-.+..  +. -++++|.|+.|+++++.
T Consensus        38 ~~l~~L~~L~Ls~N~i~~--l~-~~~~l~~L~~L~ls~N~   74 (162)
T d1a9na_          38 ATLDQFDAIDFSDNEIRK--LD-GFPLLRRLKTLLVNNNR   74 (162)
T ss_dssp             GGTTCCSEEECCSSCCCE--EC-CCCCCSSCCEEECCSSC
T ss_pred             cccccCCEEECCCCCCCc--cC-CcccCcchhhhhccccc
Confidence            345666666666554432  11 13456666666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00024  Score=65.48  Aligned_cols=163  Identities=15%  Similarity=0.073  Sum_probs=87.1

Q ss_pred             CCccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE----EECCc
Q 010478          240 ELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK----ISTPN  315 (509)
Q Consensus       240 ~~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~----i~aP~  315 (509)
                      .+..+++|++|+|++..++.-.   ..+..+.|+.|+|+++.--.........++|+.|.+.++.. ..+.    -..++
T Consensus        50 ~f~~l~~L~~L~L~~N~l~~l~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~  125 (266)
T d1p9ag_          50 TLMPYTRLTQLNLDRAELTKLQ---VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGE  125 (266)
T ss_dssp             GGTTCTTCCEEECTTSCCCEEE---CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTT
T ss_pred             Hhhccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccc-ceeeccccccccc
Confidence            3567888999999876655311   12468889999998875322222233457788888877652 2111    12355


Q ss_pred             eeEEEEecCCc-c-ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEE
Q 010478          316 LLSFKYFGPGQ-E-LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHL  391 (509)
Q Consensus       316 L~~L~~~g~~~-~-~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L  391 (509)
                      ++.|.+.+..- . ....+...+.++.+++.....   .......+..+++|++|+|+... + ..+|  ...+++|++|
T Consensus       126 l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l---~~~~~~~~~~l~~L~~L~Ls~N~-L-~~lp~~~~~~~~L~~L  200 (266)
T d1p9ag_         126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL---TELPAGLLNGLENLDTLLLQENS-L-YTIPKGFFGSHLLPFA  200 (266)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC---SCCCTTTTTTCTTCCEEECCSSC-C-CCCCTTTTTTCCCSEE
T ss_pred             cccccccccccceeccccccccccchhcccccccc---cccCccccccccccceeecccCC-C-cccChhHCCCCCCCEE
Confidence            66666655431 0 111234456666666554211   11112334566777777776332 2 2333  4456677777


Q ss_pred             EEEeeccC-ccCHHHHHHHhh
Q 010478          392 HLRVATLN-RESLLGLASIMK  411 (509)
Q Consensus       392 ~L~~~~~~-~~~~~~l~~lL~  411 (509)
                      .|..+... +....++..+++
T Consensus       201 ~L~~Np~~CdC~~~~l~~wl~  221 (266)
T d1p9ag_         201 FLHGNPWLCNCEILYFRRWLQ  221 (266)
T ss_dssp             ECCSCCBCCSGGGHHHHHHHH
T ss_pred             EecCCCCCCCcchHHHHHHHH
Confidence            77554211 233445555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.53  E-value=0.00011  Score=70.63  Aligned_cols=193  Identities=18%  Similarity=0.121  Sum_probs=97.4

Q ss_pred             ccCcCCcEEEEeeEEEChhh---HHHHHhCCccccceeeeccccee-e-EEEe------------cccccceEEEEeccc
Q 010478          242 SGVKYLRSLRLFSVNVTGEI---LEFILHNCPLLDQLSVVRSETLV-S-LKVV------------GSAIQLKHLRISTCY  304 (509)
Q Consensus       242 ~~~p~Lk~L~L~~v~~~~~~---l~~lls~CP~Le~L~L~~c~~~~-~-l~i~------------~~~~~Lk~L~l~~c~  304 (509)
                      ..+++|+.|+|++..+++..   +...+..++.|++|.+.+|..-. . ..+.            ...+.|+.|.+.+..
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            45788999999988887754   55566779999999998874210 0 0000            011344444443321


Q ss_pred             CccEEEEECCceeEEEEecCCccceeeecCCCCceEEEEEecc--chhhhhhhcccccCCCCccEEEEeechh----hhh
Q 010478          305 RLNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGVM--LTRVRNVVGPITSCFPQLKTLELDSCDE----LYA  378 (509)
Q Consensus       305 ~l~~l~i~aP~L~~L~~~g~~~~~~~~~~~~~~L~~l~i~~~~--~~~~~~~~~~l~~~l~~L~~L~L~~~~~----~~~  378 (509)
                       +..-             + .......+...+.|+++++....  .......+...+..+++|+.|.|+.+.-    ...
T Consensus       170 -i~~~-------------~-~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~  234 (344)
T d2ca6a1         170 -LENG-------------S-MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA  234 (344)
T ss_dssp             -CTGG-------------G-HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred             -cccc-------------c-cccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccc
Confidence             0000             0 00000112334556666655421  1112233445566778888888874321    011


Q ss_pred             ccC-CCCCCcccEEEEEeeccCccCHHHHHHHhhcC--CCCcEEEEEEeecCCccCCccccCcc---ccCCccEEEEec
Q 010478          379 QFS-EHELPNLTHLHLRVATLNRESLLGLASIMKAC--PFLQTLIVQFDYNGYKVGRRRKVPRH---SHQHLKLVELHG  451 (509)
Q Consensus       379 ~~~-~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~--P~Le~L~i~~~~~~~~~~~~~~~p~c---~~~~Lk~V~i~~  451 (509)
                      ... ...+++|++|+|..+.-+..+...+...+..+  +.|++|+++...  ........+..+   ....|+.+.+.|
T Consensus       235 L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~--i~~~~~~~l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         235 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE--IELDAVRTLKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC--CBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             ccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc--CChHHHHHHHHHHHccCCCCCEEECCC
Confidence            111 56778888888854432223333444555443  568888776531  000000111111   235688888876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.33  E-value=0.00055  Score=64.43  Aligned_cols=62  Identities=18%  Similarity=0.234  Sum_probs=30.5

Q ss_pred             CccCcCCcEEEEeeE-EEChhhHHHHHhCCccccceeeecccceeeE-EEecccccceEEEEecc
Q 010478          241 LSGVKYLRSLRLFSV-NVTGEILEFILHNCPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRISTC  303 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v-~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~c  303 (509)
                      +..+++|++|+|++. .+.+. +..-++++++|+.|+|+++...... .......+|+.+.+..+
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N  135 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS
T ss_pred             HhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccc
Confidence            456677777777653 22211 1122456677777777766422110 01112345666665544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.00062  Score=63.16  Aligned_cols=190  Identities=13%  Similarity=0.088  Sum_probs=92.6

Q ss_pred             cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEEEE----ECCceeE
Q 010478          245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEIKI----STPNLLS  318 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l~i----~aP~L~~  318 (509)
                      +++++|+|++-.++.-. ...+.+++.|+.|++++..- ..+.  ....+..++.+.+.....+..+.-    ..++|++
T Consensus        32 ~~~~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~ls~n~l-~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          32 AASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             TTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEECcCCcCCCCC-HHHhhccccccccccccccc-cccccccccccccccccccccccccccccchhhcccccCCE
Confidence            35666766655443211 01245566677777665431 1110  011124455554443333332211    2356666


Q ss_pred             EEEecCCcc--ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEE
Q 010478          319 FKYFGPGQE--LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLR  394 (509)
Q Consensus       319 L~~~g~~~~--~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~  394 (509)
                      |.+.+....  ....+...++|+.+++....-   ...-...+..++++++|.+..+ .+....+  +..+++|++|.+.
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l---~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l~  185 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNAL---QALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLH  185 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred             EecCCcccccccccccchhcccchhhhccccc---cccChhHhccccchhhcccccC-cccccchhhhccccccchhhhh
Confidence            666554410  112344456677766665211   1111233456678888888743 2322222  5567778888874


Q ss_pred             eeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc---cccCCccEEEEec
Q 010478          395 VATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR---HSHQHLKLVELHG  451 (509)
Q Consensus       395 ~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~---c~~~~Lk~V~i~~  451 (509)
                      .+......    ...+..+++|+.|++...       ....++.   ....+|+.+.+.|
T Consensus       186 ~N~l~~i~----~~~f~~l~~L~~L~l~~N-------~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         186 QNRVAHVH----PHAFRDLGRLMTLYLFAN-------NLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             SSCCCEEC----TTTTTTCTTCCEEECCSS-------CCSCCCHHHHTTCTTCCEEECCS
T ss_pred             hccccccC----hhHhhhhhhccccccccc-------ccccccccccccccccCEEEecC
Confidence            43222111    234577788888877652       1122221   1346788888876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.001  Score=61.67  Aligned_cols=173  Identities=17%  Similarity=0.129  Sum_probs=101.7

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEecccCccEEE----EECC
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCYRLNEIK----ISTP  314 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~~l~~l~----i~aP  314 (509)
                      +.++++|+.|++++..+..-. .....+++.+++|.+.....+..+.-  -..+++|+.|.+.++.. ..+.    -..+
T Consensus        52 f~~l~~L~~L~ls~n~l~~i~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~~  129 (284)
T d1ozna_          52 FRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLA  129 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCT
T ss_pred             hhccccccccccccccccccc-cccccccccccccccccccccccccchhhcccccCCEEecCCccc-ccccccccchhc
Confidence            567788888888766544321 11245577777777665554433211  12346788888877652 2111    1245


Q ss_pred             ceeEEEEecCCc-cc-eeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccE
Q 010478          315 NLLSFKYFGPGQ-EL-KLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTH  390 (509)
Q Consensus       315 ~L~~L~~~g~~~-~~-~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~  390 (509)
                      +|+.+.+.+..- .. .-.+...++|+.+++....-   .......+.++++|+.|.+..+. +....+  +..+++|++
T Consensus       130 ~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l---~~l~~~~f~~l~~L~~l~l~~N~-l~~i~~~~f~~l~~L~~  205 (284)
T d1ozna_         130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI---SSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMT  205 (284)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred             ccchhhhccccccccChhHhccccchhhcccccCcc---cccchhhhccccccchhhhhhcc-ccccChhHhhhhhhccc
Confidence            677777766541 11 12355677888888776221   11222445678899999987432 222223  677789999


Q ss_pred             EEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          391 LHLRVATLNRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       391 L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      |++..+......    ...+..+++|+.|.++.
T Consensus       206 L~l~~N~i~~~~----~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         206 LYLFANNLSALP----TEALAPLRALQYLRLND  234 (284)
T ss_dssp             EECCSSCCSCCC----HHHHTTCTTCCEEECCS
T ss_pred             cccccccccccc----ccccccccccCEEEecC
Confidence            998554332222    34577899999988865

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0049  Score=60.08  Aligned_cols=37  Identities=8%  Similarity=-0.017  Sum_probs=32.9

Q ss_pred             cCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccc
Q 010478          245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSE  281 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~  281 (509)
                      ++|++|++++-.+++.++.+++..++.|+.|+|.+|.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~   38 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG   38 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC
Confidence            4689999999999999999999999999999999984

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.11  E-value=0.0024  Score=54.23  Aligned_cols=67  Identities=10%  Similarity=0.089  Sum_probs=39.2

Q ss_pred             ccccCCCCccEEEEeechh----hhhccC-CCCCCcccEEEEEeeccCccC---HHHHHHHhhcCCCCcEEEEEE
Q 010478          357 PITSCFPQLKTLELDSCDE----LYAQFS-EHELPNLTHLHLRVATLNRES---LLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       357 ~l~~~l~~L~~L~L~~~~~----~~~~~~-~~~f~~Lk~L~L~~~~~~~~~---~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      ..+...+.|++|.|+.+.-    +..... ...-+.|++|+|........+   ...++..++..+.|++|.+++
T Consensus        66 ~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          66 ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             hhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence            3344566788888874421    111111 556677888888543222222   344777788888888887755

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=94.43  E-value=0.00081  Score=59.03  Aligned_cols=38  Identities=29%  Similarity=0.206  Sum_probs=27.0

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccc
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSE  281 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~  281 (509)
                      +..+++|+.|+|++..+++-  . -+.++++|+.|+|+++.
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i--~-~l~~l~~L~~L~Ls~N~   81 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKI--S-SLSGMENLRILSLGRNL   81 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCC--C-CHHHHTTCCEEECCEEE
T ss_pred             HhcccccceeECcccCCCCc--c-cccCCccccChhhcccc
Confidence            45678888888888877652  1 14567888888888774

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.39  E-value=0.0079  Score=55.79  Aligned_cols=167  Identities=16%  Similarity=0.170  Sum_probs=78.3

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE---E-ECCce
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK---I-STPNL  316 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~---i-~aP~L  316 (509)
                      +.++++|++|++.+..+..-. ...+.+++.|+.|++.++. ++.+.- .....|+.|.+.+.. +..+.   . ..+.+
T Consensus        51 f~~l~~L~~L~l~~n~~~~i~-~~~f~~l~~L~~L~l~~n~-l~~l~~-~~~~~l~~L~~~~n~-l~~l~~~~~~~~~~~  126 (305)
T d1xkua_          51 FKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQ-LKELPE-KMPKTLQELRVHENE-ITKVRKSVFNGLNQM  126 (305)
T ss_dssp             TTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSC-CSBCCS-SCCTTCCEEECCSSC-CCBBCHHHHTTCTTC
T ss_pred             hhccccccccccccccccccc-hhhhhCCCccCEecccCCc-cCcCcc-chhhhhhhhhccccc-hhhhhhhhhhccccc
Confidence            556778888888776654311 1225667888888887764 221110 112455666554432 11111   0 12233


Q ss_pred             eEEEEecCCc----cceeeecCCCCceEEEEEeccchhhhhhhcccc-cCCCCccEEEEeechhhhhccC--CCCCCccc
Q 010478          317 LSFKYFGPGQ----ELKLHIENAPQLVDISFRGVMLTRVRNVVGPIT-SCFPQLKTLELDSCDELYAQFS--EHELPNLT  389 (509)
Q Consensus       317 ~~L~~~g~~~----~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~-~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk  389 (509)
                      ..+.+.+...    .....+..+++|+.+.+.....       ..+. ..+++++.|++..+... ...+  +..+++++
T Consensus       127 ~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l-------~~l~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~l~  198 (305)
T d1xkua_         127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-------TTIPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLA  198 (305)
T ss_dssp             CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-------CSCCSSCCTTCSEEECTTSCCC-EECTGGGTTCTTCC
T ss_pred             cccccccccccccCCCccccccccccCccccccCCc-------cccCcccCCccCEEECCCCcCC-CCChhHhhcccccc
Confidence            3333332220    0111234455666665554211       1111 23467777777632211 1111  45566677


Q ss_pred             EEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          390 HLHLRVATLNRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       390 ~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      .|++..+.-....    ...+..+|+|+.|+++.
T Consensus       199 ~L~~s~n~l~~~~----~~~~~~l~~L~~L~L~~  228 (305)
T d1xkua_         199 KLGLSFNSISAVD----NGSLANTPHLRELHLNN  228 (305)
T ss_dssp             EEECCSSCCCEEC----TTTGGGSTTCCEEECCS
T ss_pred             ccccccccccccc----cccccccccceeeeccc
Confidence            7776432211111    23445677777777755

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.12  E-value=0.0063  Score=56.49  Aligned_cols=171  Identities=16%  Similarity=0.139  Sum_probs=99.7

Q ss_pred             CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE-EEecccccceEEEEecccCccEEEE-ECCceeEEEE
Q 010478          244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRISTCYRLNEIKI-STPNLLSFKY  321 (509)
Q Consensus       244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~c~~l~~l~i-~aP~L~~L~~  321 (509)
                      .++|+.|+|++..++.-. ...+.+++.|++|.+.++...... ..-..+++|+.|.+.++. ++.+.. ..+.++.+..
T Consensus        30 ~~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~~~~~l~~L~~  107 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRV  107 (305)
T ss_dssp             CTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEEC
T ss_pred             CCCCCEEECcCCcCCCcC-hhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccchhhhhhhhhc
Confidence            478999999988765311 012567999999999998643211 011235789999998875 443322 2456777776


Q ss_pred             ecCCcc--ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccC
Q 010478          322 FGPGQE--LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLN  399 (509)
Q Consensus       322 ~g~~~~--~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~  399 (509)
                      .+..-.  ....+.....+..+.+...... ........+..+++++.+.+..+. + ..++...+++|++|++..+...
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~-~~~~~~~~~~~l~~L~~l~l~~n~-l-~~l~~~~~~~L~~L~l~~n~~~  184 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLK-SSGIENGAFQGMKKLSYIRIADTN-I-TTIPQGLPPSLTELHLDGNKIT  184 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCC-GGGBCTTGGGGCTTCCEEECCSSC-C-CSCCSSCCTTCSEEECTTSCCC
T ss_pred             cccchhhhhhhhhhcccccccccccccccc-ccCCCccccccccccCccccccCC-c-cccCcccCCccCEEECCCCcCC
Confidence            654310  1112334455555544432111 111122345677889999987432 2 2233445789999998543322


Q ss_pred             ccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          400 RESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       400 ~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      ..    ....+..++.++.|.++.
T Consensus       185 ~~----~~~~~~~~~~l~~L~~s~  204 (305)
T d1xkua_         185 KV----DAASLKGLNNLAKLGLSF  204 (305)
T ss_dssp             EE----CTGGGTTCTTCCEEECCS
T ss_pred             CC----ChhHhhcccccccccccc
Confidence            11    234567889999998864

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.01  E-value=0.0035  Score=52.96  Aligned_cols=66  Identities=15%  Similarity=0.167  Sum_probs=37.9

Q ss_pred             cccCCCCccEEEEeechh----hhhccC-CCCCCcccEEEEEeecc--CccCHHHHHHHhhcCCCCcEEEEEE
Q 010478          358 ITSCFPQLKTLELDSCDE----LYAQFS-EHELPNLTHLHLRVATL--NRESLLGLASIMKACPFLQTLIVQF  423 (509)
Q Consensus       358 l~~~l~~L~~L~L~~~~~----~~~~~~-~~~f~~Lk~L~L~~~~~--~~~~~~~l~~lL~~~P~Le~L~i~~  423 (509)
                      .+...+.++.|.+..+.-    +..... ....++|+.++|.....  +......++..++.++.|++|.+++
T Consensus        69 ~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          69 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            334456677777764321    111111 45567788777744322  1233345777888899999988765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.46  E-value=0.0036  Score=50.21  Aligned_cols=39  Identities=18%  Similarity=0.140  Sum_probs=24.6

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccc
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSE  281 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~  281 (509)
                      +..+++|+.|+|++-.+++  +..-++.+++|+.|++++..
T Consensus        16 l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~   54 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNA   54 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSC
T ss_pred             cccCCCCCEEECCCCccCc--chhhhhhhhccccccccccc
Confidence            4566777777777666543  21224567777777777653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.05  Score=48.09  Aligned_cols=64  Identities=20%  Similarity=0.255  Sum_probs=38.6

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEeccc
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCY  304 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~  304 (509)
                      +.++++|++|+|++..+.+..-...+.+++.+++|.+..+..+.....  -..+++|+.|.+.++.
T Consensus        49 f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          49 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             TTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCC
T ss_pred             hhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhh
Confidence            567888888888765432210011245678888888877765543221  1234788888887764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.73  E-value=0.023  Score=48.74  Aligned_cols=37  Identities=16%  Similarity=0.083  Sum_probs=21.7

Q ss_pred             cCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccc
Q 010478          245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSE  281 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~  281 (509)
                      +++++|+|++-.++...-...+.+.+.|++|.|.+..
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~   65 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ   65 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccc
Confidence            5778888777665432112234556677777776653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.04  E-value=0.015  Score=56.46  Aligned_cols=81  Identities=20%  Similarity=0.281  Sum_probs=43.9

Q ss_pred             CceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhh-h---hccC--CCCCCcccEEEEEeeccCccCHHHHHHHh
Q 010478          337 QLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDEL-Y---AQFS--EHELPNLTHLHLRVATLNRESLLGLASIM  410 (509)
Q Consensus       337 ~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~-~---~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL  410 (509)
                      +|+++++....-.  +..+..++..++++++|.|..|. + .   ..+.  +..+++|++|+|..+   .....++..+.
T Consensus         3 ~l~~ld~~~~~i~--~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N---~i~~~~~~~l~   76 (460)
T d1z7xw1           3 DIQSLDIQCEELS--DARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN---ELGDVGVHCVL   76 (460)
T ss_dssp             EEEEEEEESCCCC--HHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC---CCHHHHHHHHH
T ss_pred             CCCEEEeeCCcCC--hHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCC---cCChHHHHHHH
Confidence            4677777662221  22334555667778888887653 2 1   1111  456777888887433   23333344443


Q ss_pred             hc----CCCCcEEEEEE
Q 010478          411 KA----CPFLQTLIVQF  423 (509)
Q Consensus       411 ~~----~P~Le~L~i~~  423 (509)
                      +.    .+.|++|++..
T Consensus        77 ~~l~~~~~~L~~L~L~~   93 (460)
T d1z7xw1          77 QGLQTPSCKIQKLSLQN   93 (460)
T ss_dssp             HTTCSTTCCCCEEECTT
T ss_pred             HHHhcCCCCCCEEECCC
Confidence            32    34677777754

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=90.61  E-value=0.022  Score=52.87  Aligned_cols=99  Identities=23%  Similarity=0.277  Sum_probs=64.3

Q ss_pred             cCCcEEEEeeEEEChh-hHHHHHhCCccccceeeecccceeeEEEe---cccccceEEEEecccCccEEEE----ECCce
Q 010478          245 KYLRSLRLFSVNVTGE-ILEFILHNCPLLDQLSVVRSETLVSLKVV---GSAIQLKHLRISTCYRLNEIKI----STPNL  316 (509)
Q Consensus       245 p~Lk~L~L~~v~~~~~-~l~~lls~CP~Le~L~L~~c~~~~~l~i~---~~~~~Lk~L~l~~c~~l~~l~i----~aP~L  316 (509)
                      .+++.|+|.+..+... .+..-+.+++.||+|+|.+|..+.. .|+   ..+++|++|++.++. +..+..    ..++|
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~-l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccc-ccccccccccccchhhhcccc-ccccccccccchhhh
Confidence            4688888887766542 2334467899999999998866542 122   235799999999886 333221    25667


Q ss_pred             eEEEEecCCc--cceeeecCCCCceEEEEEe
Q 010478          317 LSFKYFGPGQ--ELKLHIENAPQLVDISFRG  345 (509)
Q Consensus       317 ~~L~~~g~~~--~~~~~~~~~~~L~~l~i~~  345 (509)
                      +.+.+.+...  ..+-.+.+++.++.+++..
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~  158 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDG  158 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred             cccccccccccccCchhhccCcccceeeccc
Confidence            7777765431  1223466778888877765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.12  E-value=0.04  Score=45.95  Aligned_cols=126  Identities=18%  Similarity=0.191  Sum_probs=73.9

Q ss_pred             hhhhcccccCCCCccEEEEeechhh-----hhccC-CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEee
Q 010478          352 RNVVGPITSCFPQLKTLELDSCDEL-----YAQFS-EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDY  425 (509)
Q Consensus       352 ~~~~~~l~~~l~~L~~L~L~~~~~~-----~~~~~-~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~  425 (509)
                      +..+..+....++|++|.|.....+     ..... ....++|++|+|..+..+......+...++..+.|+.|++....
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            3445556667788888888753333     11222 56778899999865543444455677788888999988876531


Q ss_pred             cCCc-cCCc-cccCccccCCccEEEEeccc---CCccHHHHHHHHHhcCccCCcEEEEec
Q 010478          426 NGYK-VGRR-RKVPRHSHQHLKLVELHGFL---GRPIDLELAFYILENAMTLEKMVVNRT  480 (509)
Q Consensus       426 ~~~~-~~~~-~~~p~c~~~~Lk~V~i~~f~---g~~~e~~l~~~lL~na~~Le~m~I~~~  480 (509)
                      -... ...+ ..+  ....+|+.+.+....   |.+....++.. ++..+.|+++.+...
T Consensus        86 ~~~~g~~~l~~~l--~~~~~L~~l~L~l~~n~i~~~~~~~La~~-L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          86 ISGSGILALVEAL--QSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFT  142 (166)
T ss_dssp             CCHHHHHHHHHGG--GGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCS
T ss_pred             ccchhHHHHHHHH--HhCccccEEeeccCCCcCcHHHHHHHHHH-HHhCCCcCEEeCcCC
Confidence            1100 0000 011  134678887775432   33344455544 456788999887644

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.07  E-value=0.1  Score=41.18  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=14.5

Q ss_pred             CCCCccEEEEeechhhhhccC-CCCCCcccEEEEE
Q 010478          361 CFPQLKTLELDSCDELYAQFS-EHELPNLTHLHLR  394 (509)
Q Consensus       361 ~l~~L~~L~L~~~~~~~~~~~-~~~f~~Lk~L~L~  394 (509)
                      .+++|+.|.++.. .+ ..++ +..+++|++|++.
T Consensus        41 ~l~~L~~L~l~~N-~i-~~l~~~~~l~~L~~L~l~   73 (124)
T d1dcea3          41 ALRCLEVLQASDN-AL-ENVDGVANLPRLQELLLC   73 (124)
T ss_dssp             GCTTCCEEECCSS-CC-CCCGGGTTCSSCCEEECC
T ss_pred             hhhcccccccccc-cc-cccCccccccccCeEECC
Confidence            4555555555521 11 1112 4445555555553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.94  E-value=0.093  Score=44.67  Aligned_cols=11  Identities=18%  Similarity=0.344  Sum_probs=4.8

Q ss_pred             CCCCccEEEEe
Q 010478          361 CFPQLKTLELD  371 (509)
Q Consensus       361 ~l~~L~~L~L~  371 (509)
                      .+++|++|.|+
T Consensus        76 ~~~~L~~L~Ls   86 (192)
T d1w8aa_          76 GASHIQELQLG   86 (192)
T ss_dssp             TCTTCCEEECC
T ss_pred             cccccceeeec
Confidence            33444444444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.10  E-value=0.14  Score=42.53  Aligned_cols=121  Identities=14%  Similarity=0.233  Sum_probs=55.9

Q ss_pred             cccccCCCCccEEEEeechhh-----hhccC-CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCc
Q 010478          356 GPITSCFPQLKTLELDSCDEL-----YAQFS-EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYK  429 (509)
Q Consensus       356 ~~l~~~l~~L~~L~L~~~~~~-----~~~~~-~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~  429 (509)
                      ..+....++|++|.|+.+..+     ..... +...++|++|+|..+..+......+...++..+.|+.|++....-...
T Consensus         8 ~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~   87 (167)
T d1pgva_           8 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE   87 (167)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH
Confidence            344445556666666532211     11111 444556666666433222222334555666666677666654310000


Q ss_pred             -cCCc-cccCccccCCccEEEEeccc----CCccHHHHHHHHHhcCccCCcEEEEe
Q 010478          430 -VGRR-RKVPRHSHQHLKLVELHGFL----GRPIDLELAFYILENAMTLEKMVVNR  479 (509)
Q Consensus       430 -~~~~-~~~p~c~~~~Lk~V~i~~f~----g~~~e~~l~~~lL~na~~Le~m~I~~  479 (509)
                       ...+ ..+.  ...+|+++.+.+..    |.+....++..|-+| +.|+++.+..
T Consensus        88 g~~~l~~aL~--~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n-~sL~~l~l~~  140 (167)
T d1pgva_          88 LLARLLRSTL--VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISF  140 (167)
T ss_dssp             HHHHHHHHTT--TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCC
T ss_pred             HHHHHHHHHH--hCCcCCEEECCCCcCCCccHHHHHHHHHHHHhC-CCccEeeCcC
Confidence             0000 0011  13456666665432    333445666665444 7788776654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=85.77  E-value=0.01  Score=51.59  Aligned_cols=61  Identities=25%  Similarity=0.270  Sum_probs=40.2

Q ss_pred             CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEeccc
Q 010478          241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCY  304 (509)
Q Consensus       241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~  304 (509)
                      +.++++|+.|+|++..+++  +..+...++.|+.|++.++. ++.+.--..+++|+.|++.++.
T Consensus        66 l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~-i~~l~~~~~l~~L~~L~L~~N~  126 (198)
T d1m9la_          66 LSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQ-IASLSGIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             HHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEE-CCCHHHHHHHHHSSEEEESEEE
T ss_pred             ccCCccccChhhccccccc--cccccccccccccccccccc-ccccccccccccccccccccch
Confidence            4578999999999998875  22334456789999998874 3322111234667777776553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.08  E-value=0.67  Score=37.67  Aligned_cols=96  Identities=17%  Similarity=0.077  Sum_probs=46.2

Q ss_pred             CCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc
Q 010478          361 CFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR  438 (509)
Q Consensus       361 ~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~  438 (509)
                      +++++++|.+.+...+...-+  +..+++|+.|+|..+.-....    ...+...++|+.|+++..       .+..+|.
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~----~~~f~~l~~L~~L~Ls~N-------~l~~l~~   97 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA----PDAFHFTPRLSRLNLSFN-------ALESLSW   97 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC----TTGGGSCSCCCEEECCSS-------CCSCCCS
T ss_pred             CccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc----cccccccccccceeccCC-------CCcccCh
Confidence            345666666653322311111  455667777777433211111    234566777887777652       2222321


Q ss_pred             --cccCCccEEEEec--ccCCccHHHHHHHHHh
Q 010478          439 --HSHQHLKLVELHG--FLGRPIDLELAFYILE  467 (509)
Q Consensus       439 --c~~~~Lk~V~i~~--f~g~~~e~~l~~~lL~  467 (509)
                        ....+|+.+.+.|  |.....-.++..++-.
T Consensus        98 ~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~~~  130 (156)
T d2ifga3          98 KTVQGLSLQELVLSGNPLHCSCALRWLQRWEEE  130 (156)
T ss_dssp             TTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHT
T ss_pred             hhhccccccccccCCCcccCCchHHHHHHHHHh
Confidence              1223577888776  3223333345555433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=83.63  E-value=0.28  Score=45.07  Aligned_cols=73  Identities=19%  Similarity=0.048  Sum_probs=42.1

Q ss_pred             CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEE--ECCceeEEEE
Q 010478          244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKI--STPNLLSFKY  321 (509)
Q Consensus       244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i--~aP~L~~L~~  321 (509)
                      .++|++|+|++-.+++  +   -....+|++|.+.++.. +.+  ..-.+.|++|++.++. +..+..  ..++|+.+.+
T Consensus        57 ~~~L~~L~Ls~N~l~~--l---p~~~~~L~~L~l~~n~l-~~l--~~lp~~L~~L~L~~n~-l~~lp~~~~l~~L~~L~l  127 (353)
T d1jl5a_          57 PPHLESLVASCNSLTE--L---PELPQSLKSLLVDNNNL-KAL--SDLPPLLEYLGVSNNQ-LEKLPELQNSSFLKIIDV  127 (353)
T ss_dssp             CTTCSEEECCSSCCSS--C---CCCCTTCCEEECCSSCC-SCC--CSCCTTCCEEECCSSC-CSSCCCCTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCCCcc--c---ccchhhhhhhhhhhccc-chh--hhhccccccccccccc-cccccchhhhccceeecc
Confidence            4788888888766542  1   12245788888877542 211  1111468888887665 333221  2466777776


Q ss_pred             ecCC
Q 010478          322 FGPG  325 (509)
Q Consensus       322 ~g~~  325 (509)
                      .+..
T Consensus       128 ~~~~  131 (353)
T d1jl5a_         128 DNNS  131 (353)
T ss_dssp             CSSC
T ss_pred             cccc
Confidence            6554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.09  E-value=0.33  Score=39.69  Aligned_cols=75  Identities=21%  Similarity=0.150  Sum_probs=36.9

Q ss_pred             ecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccC-ccCHHHHHH
Q 010478          332 IENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLN-RESLLGLAS  408 (509)
Q Consensus       332 ~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~-~~~~~~l~~  408 (509)
                      +.++++|+.+++....-   ..+-...+..+++|++|.|+... + ..++  .....+|++|+|..+... ..+..++..
T Consensus        52 f~~l~~L~~L~Ls~N~l---~~i~~~~f~~l~~L~~L~Ls~N~-l-~~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~  126 (156)
T d2ifga3          52 LRGLGELRNLTIVKSGL---RFVAPDAFHFTPRLSRLNLSFNA-L-ESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR  126 (156)
T ss_dssp             SCSCCCCSEEECCSSCC---CEECTTGGGSCSCCCEEECCSSC-C-SCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHH
T ss_pred             hccccccCcceeecccc---CCcccccccccccccceeccCCC-C-cccChhhhccccccccccCCCcccCCchHHHHHH
Confidence            34455555555544211   11112334567888888887322 2 1222  122235788888554321 234555666


Q ss_pred             Hhh
Q 010478          409 IMK  411 (509)
Q Consensus       409 lL~  411 (509)
                      .++
T Consensus       127 ~~~  129 (156)
T d2ifga3         127 WEE  129 (156)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554