Citrus Sinensis ID: 010500

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51

MPPLTNQELIFFETNFSTMLKVLNKRLRRLYCRLRWPVRCRPEPKVIVKKFRKSSYKSQNDSKNELPLNGSATVHPNARTVDLKSEKSIRVATFNAALFSMAPAVPKSEKPSNFDHENEDFNRINLRAKSVIDRPKSILKQSPLHSSSVNGTENLSKQQKFAKSKLRVSINLPDNEISLLRNRQLSFREEDKDEPSSSAVRRILRGKAPLKSSVSFPTSSIASVGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRWKVQKIFDDTDFRNVLKATVDVPQIGEVNFHCTHLDHLDENWRMKQMNAIIQSNDHGEAHILAGALNSLDETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECESVVMIAKGQSVQGTCKYGTRVDYILASPNSPYKFVPGSYSVFSSKGTSDHHIVKVDITKAQSDEKQNDVGRKRYKPKQKVVKISGSSPAKGIWKAQMPER

cccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccEEEEcccccHHHHHHHccccccccccccccccHHHccccccccccEEEEEccccccccccHHHHHHHHHcccccEEEEccccccccccccHHHHHHHHHcccEEEEcccccccEEEEEEcccccEEEEEEcccccccccEEEEEEEcccccEEEEEEEccccccHHHHHHHHHHHHHHccccccEEEEEcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccEEEEccccccccccccccEEEEEEEcccccccEEccEEEEcccccccccccEEEEEEEccccccccccccccccccccEEEEEcccccccccccccccc

cccccccccccccccHHHHHHHHHHHHHHHHHHHcccHccccccEEEEEEEccccccccccccccccccccEEEccccccccccccccEEEEEHHHHHHHccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccHcccccccEEEEEccccccEHHccccccccccccccccccHHHHHccccccccccccccccHccccccHHHHHHHHHHccccEEEHHHccHccccccccHHHHHHHHcccEEEccccccHHccEEEccccHHHccccccccccccccEEEEEEEcccccEEEEEEEccccccHHHHHHHHHHHHHHccccccEEEEccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHcccccccHHHHccccccEEEEEcccccccccccccEEEEEEEccccccEEccccEEEEcccccccccEEEEEEEEEcccccccccccccccccEEEEEEccccccccEEEcccccc

MPPLTNQELIFFETNFSTMLKVLNKRLRRLYCrlrwpvrcrpepkvIVKKFRKSsyksqndsknelplngsatvhpnartvdlksekSIRVATFNAALfsmapavpksekpsnfdhenedfNRINLRAksvidrpksilkqsplhsssvngteNLSKQQKFAKSKLRvsinlpdneiSLLRNRqlsfreedkdepsssAVRRILrgkaplkssvsfptssiasvgsTRTVLEVLRELDADLLALQDVkaeeensmkPLSDLAAALGMNYvfaeswapeygnavlskwpikrwkvqkifddtdfRNVLkatvdvpqigevnfhcthldhldeNWRMKQMNAIIQSNDHGEAHILAGALnsldetdysseRWTDIVKYYEemgkptpkvEVMKFLkskqytdskdfageCESVVMIAKgqsvqgtckygtrvdyilaspnspykfvpgsysvfsskgtsdhhiVKVDItkaqsdekqndvgrkrykpkqkvvkisgsspakgiwkaqmper

MPPLTNQELIFFETNFSTMLKVLNKRLRRLycrlrwpvrcrpepkvivkkfrkssyksqndsknelplngsatvhpnartvdlkseksIRVATFNAALFSMApavpksekpsnfdhENEDFNRINLRAKSVidrpksilkqsplhsssvngtenLSKQQKFAKSKlrvsinlpdneisllrnrqlsfreedkdepsssavrrilrgkaplkssvsfptssiasvgstRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRWKVQKIFDDTDFRNVLKATvdvpqigevnFHCTHLDHLDENWRMKQMNAIIQSNDHGEAHILAGALnsldetdyssERWTDIVKYYeemgkptpkvEVMKFLKSKQYTDSKDFAGECESVVMIakgqsvqgtCKYGTRVDYILASPNSPYKFVPGSYSVFSSKGTSDHHIVKVDitkaqsdekqndvgrkrykpkqkvvkisgsspakgiwkaqmper

*******ELIFFETNFSTMLKVLNKRLRRLYCRLRWPVRCRPEPKVIVKK**************************************IRVATFNAALF*****************************************************************************************************************************GSTRTVLEVLRELDADLLALQD*************DLAAALGMNYVFAESWAPEYGNAVLSKWPIKRWKVQKIFDDTDFRNVLKATVDVPQIGEVNFHCTHLDHLDENWRMKQMNAIIQSNDHGEAHILAGALNSLDETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECESVVMIAKGQSVQGTCKYGTRVDYILASPNSPYKFVPGSYSVFSS*****HHIVKV*********************************************

****TNQELIFFETNFSTMLKVLNKRLRRLYCRLRWPVRCRPEP*****************************************EKSIRVATFNAALFSMAPA****************************************************************SINLPDNEISLLRN***************************LKSSVSFPTSSIASVGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRWKVQKIFDDTDFRNVLKATVDVPQIGEVNFHCTHLDHLDENWRMKQMNAIIQSNDHGEAHILAGALNSLDETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECESVVMIAKGQSVQGTCKYGTRVDYILASPNSPYKFVPGSYSVFSSKGTSDHHIVKVDI************************************K******

MPPLTNQELIFFETNFSTMLKVLNKRLRRLYCRLRWPVRCRPEPKVIVKKF************NELPLNGSATVHPNARTVDLKSEKSIRVATFNAALFSMAPAV**********HENEDFNRINLRAKSVIDRPKSILKQ************************LRVSINLPDNEISLLRNRQLSF************VRRILRGKAPLKSSVSFPTSSIASVGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRWKVQKIFDDTDFRNVLKATVDVPQIGEVNFHCTHLDHLDENWRMKQMNAIIQSNDHGEAHILAGALNSLDETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECESVVMIAKGQSVQGTCKYGTRVDYILASPNSPYKFVPGSYSVFSSKGTSDHHIVKVDITKAQSDEKQNDVGRKRYKPKQKVVKISGS**************

*PPLTNQELIFFETNFSTMLKVLNKRLRRLYCRLRWPVRCRPEPKVIVKKFRK****************************DLKSEKSIRVATFNAALFSMAPAV*******************************************************FAKSKLRVSINLPDNEISLLR*******************************************GSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRWKVQKIFDDTDFRNVLKATVDVPQIGEVNFHCTHLDHLDENWRMKQMNAIIQSNDHGEAHILAGALNSLDETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECESVVMIAKGQSVQGTCKYGTRVDYILASPNSPYKFVPGSYSVFSSKGTSDHHIVKVDITKAQSD************PKQKVVKISGSSPAKGIWKA*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MPPLTNQELIFFETNFSTMLKVLNKRLRRLYCRLRWPVRCRPEPKVIVKKFRKSSYKSQNDSKNELPLNGSATVHPNARTVDLKSEKSIRVATFNAALFSMAPAVPKSEKPSNFDHENEDFNRINLRAKSVIDRPKSILKQSPLHSSSVNGTENLSKQQKFAKSKLRVSINLPDNEISLLRNRQLSFREEDKDEPSSSAVRRILRGKAPLKSSVSFPTSSIASVGSTRTVLEVxxxxxxxxxxxxxxxxxxxxxMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRWKVQKIFDDTDFRNVLKATVDVPQIGEVNFHCTHLDHLDENWRMKQMNAIIQSNDHGEAHILAGALNSLDETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECESVVMIAKGQSVQGTCKYGTRVDYILASPNSPYKFVPGSYSVFSSKGTSDHHIVKVDITKAQSDEKQNDVGRKRYKPKQKVVKISGSSPAKGIWKAQMPER

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		509
359479852		511	PREDICTED: uncharacterized protein LOC10	0.964	0.960	0.747	0.0
255567610		523	hydrolase, putative [Ricinus communis] g	0.970	0.944	0.706	0.0
224131300		449	predicted protein [Populus trichocarpa]	0.880	0.997	0.735	0.0
296086676		397	unnamed protein product [Vitis vinifera]	0.701	0.899	0.777	1e-165
356536749		473	PREDICTED: uncharacterized protein LOC10	0.911	0.980	0.638	1e-160
225432458		486	PREDICTED: uncharacterized protein LOC10	0.929	0.973	0.612	1e-159
449444913		486	PREDICTED: uncharacterized protein LOC10	0.860	0.901	0.640	1e-156
449490520		491	PREDICTED: uncharacterized LOC101212223,	0.860	0.892	0.640	1e-156
356557853		490	PREDICTED: uncharacterized protein LOC10	0.944	0.981	0.582	1e-152
255551567		490	hydrolase, putative [Ricinus communis] g	0.927	0.963	0.574	1e-152

>gi\|359479852\|ref\|XP_002271044.2\| PREDICTED: uncharacterized protein LOC100247717 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/507 (74%), Positives = 420/507 (82%), Gaps = 16/507 (3%)

Query: 10  IFFETNFSTMLKVLNKRLRRLYCRLRWPVRCRPEPKVIVKKFRKSSYKSQNDSKNELPLN 69
           I F TNFS MLK++N RLRRL  RLRWP+R R  P+V++K   KSS KS  D+K E   N
Sbjct: 9   ILFNTNFSAMLKIINTRLRRLCSRLRWPLRGRSRPRVVIKTLGKSSSKSHFDAKREAAAN 68

Query: 70  GSATVHPNARTVDLKSEKSIRVATFNAALFSMAPAVPKSEKPSNFDHENEDFNR------ 123
           GSA VHPN +    K  K+IR+ATFNAALFSMAPAVP++EK  NF + N +  +      
Sbjct: 69  GSAVVHPNGQLGAEKPNKTIRIATFNAALFSMAPAVPRAEKGENFGNGNVEGLKEKRSVD 128

Query: 124 INLRAKSVIDRPKSILKQSPLHSSSVNGTENLSKQQKFAKSKLRVSINLPDNEISLLRNR 183
           +N R KS  +RPKSILKQSPLH +S+   ENLSKQQKFAKSK RVSINLPDNEISL RNR
Sbjct: 129 MNFRTKSANERPKSILKQSPLHPNSMILPENLSKQQKFAKSKPRVSINLPDNEISLGRNR 188

Query: 184 QLSFREEDKDEPSSSAVRRILRGKAPLKSSVSFPTS-----SIASVGSTRTVLEVLRELD 238
           +LSF EE K+  SSS + RILRGKAPL+S+VSFP S        +  S RTV+EVLRELD
Sbjct: 189 KLSFVEE-KEGSSSSTIGRILRGKAPLRSTVSFPASLEKVTEGEAYRSRRTVVEVLRELD 247

Query: 239 ADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRWKVQKIF 298
           AD+LALQDVKAEEE +MKPLSDLAAALGMNYVFAESWAPEYGNA+LSKWPIKRWKVQKIF
Sbjct: 248 ADILALQDVKAEEEKAMKPLSDLAAALGMNYVFAESWAPEYGNAILSKWPIKRWKVQKIF 307

Query: 299 DDTDFRNVLKATVDVPQIGEVNFHCTHLDHLDENWRMKQMNAIIQSNDHGEAHILAGALN 358
           DDTDFRNVLKAT+DVPQ GEVNFHCTHLDHLDENWRMKQ+N+IIQSN+    HILAG LN
Sbjct: 308 DDTDFRNVLKATIDVPQAGEVNFHCTHLDHLDENWRMKQINSIIQSNEG--PHILAGGLN 365

Query: 359 SLDETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECESVVMIAKGQ 418
           SLDETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQYTD+KDFAGECESVVMIAKGQ
Sbjct: 366 SLDETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQYTDAKDFAGECESVVMIAKGQ 425

Query: 419 SVQGTCKYGTRVDYILASPNSPYKFVPGSYSVFSSKGTSDHHIVKVDITKAQSDEKQNDV 478
           SVQGTCKYGTRVDYILASP+SPYKFVPGSYSVFSSKGTSDHHIVKVDI K ++  ++N  
Sbjct: 426 SVQGTCKYGTRVDYILASPSSPYKFVPGSYSVFSSKGTSDHHIVKVDIAKVETIGQENG- 484

Query: 479 GRKRYKPKQKVVKISGSSPAKGIWKAQ 505
            RKR K KQKVVKI+ SS +KGIW AQ
Sbjct: 485 ARKRRKQKQKVVKITDSS-SKGIWTAQ 510

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255567610\|ref\|XP_002524784.1\| hydrolase, putative [Ricinus communis] gi\|223535968\|gb\|EEF37627.1\| hydrolase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224131300\|ref\|XP_002321050.1\| predicted protein [Populus trichocarpa] gi\|222861823\|gb\|EEE99365.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|296086676\|emb\|CBI32311.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356536749\|ref\|XP_003536898.1\| PREDICTED: uncharacterized protein LOC100801298 [Glycine max]	Back alignment and taxonomy information

>gi\|225432458\|ref\|XP_002277228.1\| PREDICTED: uncharacterized protein LOC100259606 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449444913\|ref\|XP_004140218.1\| PREDICTED: uncharacterized protein LOC101212223, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449490520\|ref\|XP_004158629.1\| PREDICTED: uncharacterized LOC101212223, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356557853\|ref\|XP_003547225.1\| PREDICTED: uncharacterized protein LOC100776616 [Glycine max]	Back alignment and taxonomy information

>gi\|255551567\|ref\|XP_002516829.1\| hydrolase, putative [Ricinus communis] gi\|223543917\|gb\|EEF45443.1\| hydrolase, putative [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		509
TAIR\|locus:2066347		438	AT2G48030 [Arabidopsis thalian	0.542	0.630	0.723	6.3e-127
TAIR\|locus:2089930		458	AT3G21530 "AT3G21530" [Arabido	0.693	0.770	0.597	1e-126

TAIR\|locus:2066347 AT2G48030 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1058 (377.5 bits), Expect = 6.3e-127, Sum P(2) = 6.3e-127
 Identities = 204/282 (72%), Positives = 234/282 (82%)

Query:   226 STRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESWAPEYGNAVLS 285
             STRT LEVL ELDAD+LALQDVKA+E + M+PLSDLAAALGMNYVFAESWAPEYGNA+LS
Sbjct:   153 STRTALEVLSELDADVLALQDVKADEADQMRPLSDLAAALGMNYVFAESWAPEYGNAILS 212

Query:   286 KWPIKRWKVQKIFDDTDFRNVLKATVDVPQIGEVNFHCTHLDHLDENWRMKQMNAIIQSN 345
             KWPIK   V +IFD TDFRNVLKA+++VP  GEV FHCTHLDHLDE WRMKQ++AIIQS 
Sbjct:   213 KWPIKSSNVLRIFDHTDFRNVLKASIEVPGSGEVEFHCTHLDHLDEKWRMKQVDAIIQST 272

Query:   346 DHGEAHILAGALNSLDETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFA 405
             +    HILAGALNSLDE+DYS ERWTDIVKYYEEMGKP PK +VM+FLKSK+YTD+KDFA
Sbjct:   273 N--VPHILAGALNSLDESDYSPERWTDIVKYYEEMGKPIPKAQVMRFLKSKEYTDAKDFA 330

Query:   406 GECESVVMIAKGQSVQGTCKYGTRVDYILASPNSPYKFVPGSYSVFSSKGTSDHHIVKVD 465
             GECESVV++AKGQSVQGTCKYGTRVDYILAS +SPY+FVPGSYSV SSKGTSDHHIVKVD
Sbjct:   331 GECESVVVVAKGQSVQGTCKYGTRVDYILASSDSPYRFVPGSYSVLSSKGTSDHHIVKVD 390

Query:   466 ITKAQS----DEKQNDVGRKRYKPKQKVVKISGSSPAKGIWK 503
             + KA S    +++Q  +   + +        + SS  K  W+
Sbjct:   391 VVKATSINVNEQEQRPIRSHKLQRITATTYNNNSSLTKASWR 432

GO:0005634 "nucleus" evidence=ISM

GO:0016787 "hydrolase activity" evidence=ISS

TAIR\|locus:2089930 AT3G21530 "AT3G21530" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.21.1	LOW CONFIDENCE prediction!
3rd Layer	3.1.4	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XIV.2824.1	hypothetical protein (399 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		509
COG3568		259	COG3568, ElsH, Metal-dependent hydrolase [General	4e-11
cd09080		248	cd09080, TDP2, Phosphodiesterase domain of human T	4e-09
cd09078		280	cd09078, nSMase, Neutral sphingomyelinases (nSMase	2e-05
cd09083		252	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphata	5e-05
cd10281		253	cd10281, Nape_like_AP-endo, Neisseria meningitides	7e-04
cd09079		259	cd09079, RgfB-like, Streptococcus agalactiae RgfB,	0.001
cd09086		254	cd09086, ExoIII-like_AP-endo, Escherichia coli exo	0.003

>gnl\|CDD\|226098 COG3568, ElsH, Metal-dependent hydrolase [General function prediction only]	Back alignment and domain information

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 23/154 (14%)

Query: 229 TVLEVLRELDADLLALQDVKAEEENSMKPLSD-----LAAALGMNY---------VFAES 274
            + EV+RE+ AD++ALQ+V        +         L       Y         V+ E 
Sbjct: 32  RIAEVIREVGADIVALQEVDG-AFGRHRDGLLDLPHLLGRLGLAPYWWSGAAFGAVYGEG 90

Query: 275 WAPEYGNAVLSKWPIKRWKVQKIFDDTDF--RNVLKATVDVPQIGEVNFHCTHLDHLDEN 332
               +GNA+LS+ PI+  +   + D T    R  L A +++P    +     HL   +E+
Sbjct: 91  Q---HGNAILSRLPIRDVENLALPDPTGLEPRGALLAEIELPGGKPLRVINAHLGLSEES 147

Query: 333 WRMKQMNAIIQSNDHGE--AHILAGALNSLDETD 364
            R++Q  A++           +L G  N+   + 
Sbjct: 148 -RLRQAAALLALAGLPALNPTVLMGDFNNEPGSA 180

Length = 259

>gnl\|CDD\|197314 cd09080, TDP2, Phosphodiesterase domain of human TDP2, a 5'-tyrosyl DNA phosphodiesterase, and related domains	Back alignment and domain information

>gnl\|CDD\|197312 cd09078, nSMase, Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine	Back alignment and domain information

>gnl\|CDD\|197317 cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1	Back alignment and domain information

>gnl\|CDD\|197336 cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	Back alignment and domain information

>gnl\|CDD\|197313 cd09079, RgfB-like, Streptococcus agalactiae RgfB, part of a putative two component signal transduction system, and related proteins	Back alignment and domain information

>gnl\|CDD\|197320 cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	Back alignment and domain information

 Score = 39.0 bits (92), Expect = 0.003
 Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 34/176 (19%)

Query: 221 IAS--VGSTRT----VLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAE- 273
           IA+  V S R     VL+ L+E D D+L LQ+ K E++    P     A      V  + 
Sbjct: 3   IATWNVNSIRARLEQVLDWLKEEDPDVLCLQETKVEDDQF--PADAFEALGYHVAVHGQK 60

Query: 274 SWAPEYGNAVLSKWPIKRWKVQKIFDDTDFRN---VLKATVD--------VPQIGEVNFH 322
           ++    G A+LS+ P++   V+  F      +   ++ A V         VP  G++   
Sbjct: 61  AY---NGVAILSRLPLE--DVRTGFPGDPDDDQARLIAARVGGVRVINLYVPNGGDIG-- 113

Query: 323 CTHLDH-LDENWRMKQMNAIIQSN-DHGEAHILAGALN-SLDETD-YSSERWTDIV 374
                + LD  W + ++   +Q      +  +L G  N + ++ D +  ++    V
Sbjct: 114 SPKFAYKLD--W-LDRLIRYLQKLLKPDDPLVLVGDFNIAPEDIDVWDPKQLLGKV 166

This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily. Length = 254

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		509
PRK11756		268	exonuclease III; Provisional	99.95
COG3568		259	ElsH Metal-dependent hydrolase [General function p	99.95
PRK05421		263	hypothetical protein; Provisional	99.92
COG0708		261	XthA Exonuclease III [DNA replication, recombinati	99.92
TIGR00195		254	exoDNase_III exodeoxyribonuclease III. The model b	99.9
TIGR03395		283	sphingomy sphingomyelin phosphodiesterase. Members	99.89
TIGR00633		255	xth exodeoxyribonuclease III (xth). This family is	99.89
PRK13911		250	exodeoxyribonuclease III; Provisional	99.88
PTZ00297		1452	pantothenate kinase; Provisional	99.86
PLN03144		606	Carbon catabolite repressor protein 4 homolog; Pro	99.81
KOG3873		422	consensus Sphingomyelinase family protein [Signal	99.8
KOG2756		349	consensus Predicted Mg2+-dependent phosphodiestera	99.75
PRK15251		271	cytolethal distending toxin subunit CdtB; Provisio	99.72
PF03372		249	Exo_endo_phos: Endonuclease/Exonuclease/phosphatas	99.65
COG3021		309	Uncharacterized protein conserved in bacteria [Fun	99.59
KOG2338		495	consensus Transcriptional effector CCR4-related pr	99.49
smart00476		276	DNaseIc deoxyribonuclease I. Deoxyribonuclease I c	99.42
smart00128		310	IPPc Inositol polyphosphate phosphatase, catalytic	99.41
COG5239		378	CCR4 mRNA deadenylase, exonuclease subunit and rel	99.11
KOG0620		361	consensus Glucose-repressible alcohol dehydrogenas	98.99
COG2374		798	Predicted extracellular nuclease [General function	98.74
PF14529		119	Exo_endo_phos_2: Endonuclease-reverse transcriptas	98.61
KOG0566		1080	consensus Inositol-1,4,5-triphosphate 5-phosphatas	98.54
PLN03191		621	Type I inositol-1,4,5-trisphosphate 5-phosphatase	98.36
COG5411		460	Phosphatidylinositol 5-phosphate phosphatase [Sign	97.96
KOG1294		335	consensus Apurinic/apyrimidinic endonuclease and r	97.89
PTZ00312		356	inositol-1,4,5-triphosphate 5-phosphatase; Provisi	92.81
KOG1976		391	consensus Inositol polyphosphate 5-phosphatase, ty	91.28

>PRK11756 exonuclease III; Provisional	Back alignment and domain information

Probab=99.95  E-value=2e-27  Score=238.02  Aligned_cols=234  Identities=15%  Similarity=0.115  Sum_probs=156.4

Q ss_pred             cccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEEEeccCCCCceeEEEEeccceeeeEeeecC--CC
Q 010500          224 VGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRWKVQKIFD--DT  301 (509)
Q Consensus       224 ~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~f~~s~~g~~GvAILSR~PI~~~~~~~l~~--~~  301 (509)
                      ..+.+++.++|++.+||||||||++......  . .++...+||++++.. ..+.+|+|||||+|+..... .++.  ..
T Consensus        12 ~~~~~~i~~~i~~~~pDIi~LQE~~~~~~~~--~-~~~~~~~gy~~~~~~-~~~~~GvailSr~p~~~~~~-~~~~~~~~   86 (268)
T PRK11756         12 RARPHQLEAIIEKHQPDVIGLQETKVHDEMF--P-LEEVEALGYHVFYHG-QKGHYGVALLSKQTPIAVRK-GFPTDDEE   86 (268)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEecccccccC--C-HHHHHhcCCEEEEeC-CCCCCEEEEEECCChHHeEE-CCCCcccc
Confidence            4467889999999999999999997543221  1 233446788776643 45789999999999876543 2322  23


Q ss_pred             CCceEEEEEEEeCCccEEEEEEecCCCCC---h----HHHHHHHHHHHHHc----CCCCcEEEEecCCCCCCCCCcc-hh
Q 010500          302 DFRNVLKATVDVPQIGEVNFHCTHLDHLD---E----NWRMKQMNAIIQSN----DHGEAHILAGALNSLDETDYSS-ER  369 (509)
Q Consensus       302 ~~R~~L~a~l~~~g~~~L~VintHL~~~~---~----~~R~~Q~~~L~~~L----~~~~PvIL~GDFNs~p~s~~~~-~~  369 (509)
                      +.+.++.+.+..++ +.+.|+|+|++...   .    ..|.++++.|.+++    +.+.|+|+|||||+.+.+.+.. +.
T Consensus        87 ~~~r~l~~~i~~~~-g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~pvIl~GDfN~~~~~~D~~~~~  165 (268)
T PRK11756         87 AQRRIIMATIPTPN-GNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLETELSPDNPLLIMGDMNISPTDLDIGIGE  165 (268)
T ss_pred             ccCCEEEEEEEcCC-CCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHHHhccCCCEEEEeecccCCChhhcCCcc
Confidence            46789999999887 55999999997521   1    24566777776655    3567999999999998754211 00


Q ss_pred             hhhHHHh--hhhcCCCChhHHHHHHHhhCCceecccccCCC-c-ceeE-ecCCccccCCCCCCCceEEEEeCCCCCCcee
Q 010500          370 WTDIVKY--YEEMGKPTPKVEVMKFLKSKQYTDSKDFAGEC-E-SVVM-IAKGQSVQGTCKYGTRVDYILASPNSPYKFV  444 (509)
Q Consensus       370 ~~~i~~~--~~~~G~~~~~~~~~~~L~~~glvDa~~~~~~~-~-~tT~-~~~g~~~~~t~~~~~RIDyIf~S~~~~~kl~  444 (509)
                      ++. ...  ....+...++++..+.|.+.+|+|+|+..++. . .+|| .+.+..  ...+.+.||||||+++....  .
T Consensus       166 ~~~-~~~~~~~~~~~~~~er~~~~~l~~~~l~D~~R~~~p~~~~~~T~~~~~~~~--~~~~~g~RIDyi~~s~~~~~--~  240 (268)
T PRK11756        166 ENR-KRWLRTGKCSFLPEEREWLDRLMDWGLVDTFRQLNPDVNDRFSWFDYRSKG--FDDNRGLRIDLILATQPLAE--R  240 (268)
T ss_pred             cCh-HHhcccCCccCCHHHHHHHHHHHhCCcEeehhhhCCCCCCcccCcCCcccc--cccCCceEEEEEEeCHHHHh--h
Confidence            110 010  11123444555677777778999999999875 2 2454 443321  11246899999999987421  2


Q ss_pred             eeEEEEcCC----CCCCCccceEEEEEe
Q 010500          445 PGSYSVFSS----KGTSDHHIVKVDITK  468 (509)
Q Consensus       445 v~s~~Vi~~----~~~SDH~PV~adf~L  468 (509)
                      +..+.+..+    .++|||+||+++|.+
T Consensus       241 v~~~~i~~~~~~~~~~SDH~PV~~~~~~  268 (268)
T PRK11756        241 CVETGIDYDIRGMEKPSDHAPIWATFKL  268 (268)
T ss_pred             heEeEEeHHHhCCCCCCCcccEEEEEeC
Confidence            567776532    247999999999975

>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]	Back alignment and domain information

>PRK05421 hypothetical protein; Provisional	Back alignment and domain information

>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00195 exoDNase_III exodeoxyribonuclease III	Back alignment and domain information

>TIGR03395 sphingomy sphingomyelin phosphodiesterase	Back alignment and domain information

>TIGR00633 xth exodeoxyribonuclease III (xth)	Back alignment and domain information

>PRK13911 exodeoxyribonuclease III; Provisional	Back alignment and domain information

>PTZ00297 pantothenate kinase; Provisional	Back alignment and domain information

>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional	Back alignment and domain information

>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]	Back alignment and domain information

>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]	Back alignment and domain information

>PRK15251 cytolethal distending toxin subunit CdtB; Provisional	Back alignment and domain information

>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []	Back alignment and domain information

>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]	Back alignment and domain information

>smart00476 DNaseIc deoxyribonuclease I	Back alignment and domain information

>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues	Back alignment and domain information

>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]	Back alignment and domain information

>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]	Back alignment and domain information

>COG2374 Predicted extracellular nuclease [General function prediction only]	Back alignment and domain information

>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B	Back alignment and domain information

>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional	Back alignment and domain information

>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]	Back alignment and domain information

>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional	Back alignment and domain information

>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		509
3teb_A		266	Endonuclease/exonuclease/phosphatase; PSI-biology,	4e-28
2ddr_A		306	Sphingomyelin phosphodiesterase; DNAse I like fold	7e-12
1zwx_A		301	SMCL, sphingomyelinase-C; dnase1-like fold, beta-h	1e-10
3i41_A		317	Beta-hemolysin; beta toxin, sphingomyelinase, toxi	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
3l1w_A		257	Uncharacterized protein; APC29019.2, conserved pro	2e-09
3g6s_A		267	Putative endonuclease/exonuclease/phosphatase fami	2e-09
3mpr_A		298	Putative endonuclease/exonuclease/phosphatase FAM	5e-06

>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Length = 266	Back alignment and structure

 Score =  111 bits (280), Expect = 4e-28
 Identities = 43/267 (16%), Positives = 84/267 (31%), Gaps = 56/267 (20%)

Query: 230 VLEVLRELDADLLALQDV-----------KAEEENSMKPLSD-LAAALGMNYVFAESWAP 277
           +   + E   D++A+Q+V              EEN    L + L      +Y    S + 
Sbjct: 26  LARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTDTDYYLHWSNSH 85

Query: 278 ------EYGNAVLSKWPIKRWKVQKIFDDTDF-----RNVLKATVDVPQIGEVNFHCTHL 326
                   G AV+++  IK                  R ++  T++     ++ F+  H+
Sbjct: 86  IGFGKYNEGVAVITRHKIKAEDEFYCTFAQSVRTISARRIVSITINYEG-QDIEFYSCHM 144

Query: 327 DHLD--ENWRMKQMNAIIQSNDHGEAHILAGALNSLDETDYSSERWTDIVKYYEEMGKPT 384
           +  +       K +  I+    +    IL G  N+                         
Sbjct: 145 NLPNCETEDMGKNIQTILNRTQNSNLKILMGDFNT----------------------DAI 182

Query: 385 PKVEVMKFLKSKQYTDSKDFAGECESVVMIAKGQSVQGTCKYGTRVDYILASPNSPYKFV 444
             V   + + S+   D+   A + +  + + K        K   R+DYI ++        
Sbjct: 183 GNVAAYENILSQGLFDTYVMAEKKDDGITVDKSIHGWDNDKAKKRLDYIFSNKE----LK 238

Query: 445 PGSYSVF----SSKGTSDHHIVKVDIT 467
                V     + +  SDH  ++V I 
Sbjct: 239 VKESKVIFNNKNKEIVSDHFGIEVKIE 265

PyMOL of 3teb

>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Length = 306	Back alignment and structure

>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Length = 301	Back alignment and structure

>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Length = 317	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Length = 257	Back alignment and structure

>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Length = 267	Back alignment and structure

>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Length = 298	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		509
3teb_A		266	Endonuclease/exonuclease/phosphatase; PSI-biology,	99.96
3l1w_A		257	Uncharacterized protein; APC29019.2, conserved pro	99.95
4fva_A		256	5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy	99.95
4gew_A		362	5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy	99.95
3g6s_A		267	Putative endonuclease/exonuclease/phosphatase fami	99.94
4gz1_A		256	Tyrosyl-DNA phosphodiesterase 2; protein-DNA compl	99.94
4f1h_A		250	Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA com	99.94
3mpr_A		298	Putative endonuclease/exonuclease/phosphatase FAM	99.94
1ako_A		268	Exonuclease III; AP-endonuclease, DNA repair; 1.70	99.93
2jc4_A		256	Exodeoxyribonuclease III; hydrolase, repair phosph	99.93
1zwx_A		301	SMCL, sphingomyelinase-C; dnase1-like fold, beta-h	99.93
2voa_A		257	AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP	99.92
1vyb_A		238	ORF2 contains A reverse transcriptase domain; endo	99.91
2jc5_A		259	Exodeoxyribonuclease; hydrolase, repair phosphodie	99.91
2j63_A		467	AP-endonuclease; base excision repair, lyase; 2.48	99.9
3g91_A		265	MTH0212, exodeoxyribonuclease; double-strand speci	99.9
2ddr_A		306	Sphingomyelin phosphodiesterase; DNAse I like fold	99.9
1hd7_A		318	DNA-(apurinic or apyrimidinic site) lyase; DNA rep	99.9
2o3h_A		285	DNA-(apurinic or apyrimidinic site) lyase; APE, en	99.89
3i41_A		317	Beta-hemolysin; beta toxin, sphingomyelinase, toxi	99.88
1wdu_A		245	TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA	99.87
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	99.83
3ngq_A		398	CCR4-NOT transcription complex subunit 6-like; alp	99.81
2ei9_A		240	Non-LTR retrotransposon R1BMKS ORF2 protein; four	99.79
2f1n_A		262	CDT B, cytolethal distending toxin subunit B; E.co	99.77
2imq_X		282	Salivary nitrophorin; ferrous heme, beta-sandwich,	99.73
1sr4_B		261	CDT B, cytolethal distending toxin protein B; bact	99.73
2a40_B		260	Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse	99.72
1i9z_A		347	Synaptojanin, phosphatidylinositol phosphate phosp	99.64
2xsw_A		357	72 kDa inositol polyphosphate 5-phosphatase; inosi	99.61
3mtc_A		313	Type II inositol-1,4,5-trisphosphate 5-phosphatas;	99.3
4a9c_A		316	Phosphatidylinositol-3,4,5-trisphosphate 5-phosph;	99.25

>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}	Back alignment and structure

Probab=99.96  E-value=2.6e-28  Score=237.41  Aligned_cols=218  Identities=17%  Similarity=0.179  Sum_probs=155.1

Q ss_pred             CcccHHHHHHHHHccCCcEEEEcCccCCcccC-------CC-----hHHHHHHHh--CCcEEEec---c-CCCCceeEEE
Q 010500          223 SVGSTRTVLEVLRELDADLLALQDVKAEEENS-------MK-----PLSDLAAAL--GMNYVFAE---S-WAPEYGNAVL  284 (509)
Q Consensus       223 ~~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~-------~~-----~l~~La~~l--G~~~~f~~---s-~~g~~GvAIL  284 (509)
                      ...++++|+++|++.+|||||||||.......       .+     ..+.|++..  +|.+.+..   . ..+.+|++||
T Consensus        19 ~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~g~ail   98 (266)
T 3teb_A           19 QMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTDTDYYLHWSNSHIGFGKYNEGVAVI   98 (266)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTTTCCSCCEEEEEEEEECSTTEEEEEEEE
T ss_pred             hhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHHHHHhCCCCeEEEEeccccCccccCCeEEEE
Confidence            35678999999999999999999996443210       01     234555433  25443221   1 2345799999


Q ss_pred             EeccceeeeEeeecC-----CCCCceEEEEEEEeCCccEEEEEEecCCCC--ChHHHHHHHHHHHHHcCCCCcEEEEecC
Q 010500          285 SKWPIKRWKVQKIFD-----DTDFRNVLKATVDVPQIGEVNFHCTHLDHL--DENWRMKQMNAIIQSNDHGEAHILAGAL  357 (509)
Q Consensus       285 SR~PI~~~~~~~l~~-----~~~~R~~L~a~l~~~g~~~L~VintHL~~~--~~~~R~~Q~~~L~~~L~~~~PvIL~GDF  357 (509)
                      ||+|+.....+.++.     +.+.|.++.+.+.+++ ..+.|+++|+++.  ....|..|++.|++++....|+||||||
T Consensus        99 sr~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~v~~~Hl~~~~~~~~~r~~q~~~l~~~~~~~~~~il~GDf  177 (266)
T 3teb_A           99 TRHKIKAEDEFYCTFAQSVRTISARRIVSITINYEG-QDIEFYSCHMNLPNCETEDMGKNIQTILNRTQNSNLKILMGDF  177 (266)
T ss_dssp             ESSCCSEEEEEECSSCCCTTCTTCCEEEEEEEEETT-EEEEEEEEECCCTTCTTCCHHHHHHHHHTSSCSCCEEEEEEEC
T ss_pred             ECceecCceeEEeCCCCCCCCcccceEEEEEEEeCC-eEEEEEEecCCCccCChHHHHHHHHHHHHHHhcCCcEEEEeEC
Confidence            999998888777764     2457899999999987 9999999999874  4567899999999999767899999999


Q ss_pred             CCCCCCCCcchhhhhHHHhhhhcCCCChhHHHHHHHhhCCceecccccCCC-cceeEecCCccccCCCCCCCceEEEEeC
Q 010500          358 NSLDETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGEC-ESVVMIAKGQSVQGTCKYGTRVDYILAS  436 (509)
Q Consensus       358 Ns~p~s~~~~~~~~~i~~~~~~~G~~~~~~~~~~~L~~~glvDa~~~~~~~-~~tT~~~~g~~~~~t~~~~~RIDyIf~S  436 (509)
                      |+.+...                      ...++.|.+.+|.|+|...++. ..+||.... ...+......||||||++
T Consensus       178 N~~~~~~----------------------~~~~~~l~~~~l~d~~~~~~~~~~~~t~~~~~-~~~~~~~~~~riD~i~~s  234 (266)
T 3teb_A          178 NTDAIGN----------------------VAAYENILSQGLFDTYVMAEKKDDGITVDKSI-HGWDNDKAKKRLDYIFSN  234 (266)
T ss_dssp             CCCTTTC----------------------HHHHHHHHTTTCEEHHHHCSEECCCCCEECC-------CTTEECCEEEEES
T ss_pred             CCCCCCC----------------------CcHHHhhccccccchHHhhccccCCccccCcc-CCcCcCCcCCeeEEEEeC
Confidence            9987321                      1234455567899999877643 234553211 111122356899999999


Q ss_pred             CCCCCceeeeEEEEcCC----CCCCCccceEEEEEe
Q 010500          437 PNSPYKFVPGSYSVFSS----KGTSDHHIVKVDITK  468 (509)
Q Consensus       437 ~~~~~kl~v~s~~Vi~~----~~~SDH~PV~adf~L  468 (509)
                      +.    +.+..+.++..    ..+|||+||+++|.+
T Consensus       235 ~~----~~~~~~~v~~~~~~~~~~SDH~Pv~~~l~l  266 (266)
T 3teb_A          235 KE----LKVKESKVIFNNKNKEIVSDHFGIEVKIEF  266 (266)
T ss_dssp             SC----CCEEEEEEESSSSSSCCCSSSCEEEEEECC
T ss_pred             CC----eEEEEEEEEeCCCCCCCcCCccCEEEEEEC
Confidence            87    56778888753    357999999999964

PyMOL of 3teb

>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}	Back alignment and structure

>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}	Back alignment and structure

>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A	Back alignment and structure

>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}	Back alignment and structure

>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*	Back alignment and structure

>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*	Back alignment and structure

>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1	Back alignment and structure

>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}	Back alignment and structure

>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3	Back alignment and structure

>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}	Back alignment and structure

>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A	Back alignment and structure

>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}	Back alignment and structure

>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}	Back alignment and structure

>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A	Back alignment and structure

>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X	Back alignment and structure

>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A	Back alignment and structure

>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A	Back alignment and structure

>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A	Back alignment and structure

>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A	Back alignment and structure

>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}	Back alignment and structure

>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1	Back alignment and structure

>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*	Back alignment and structure

>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B	Back alignment and structure

>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*	Back alignment and structure

>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*	Back alignment and structure

>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}	Back alignment and structure

>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A	Back alignment and structure

>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		509
d1akoa_		268	d.151.1.1 (A:) DNA-repair enzyme exonuclease III {	1e-12
d1hd7a_		275	d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human	5e-12
d2f1na1		250	d.151.1.1 (A:1-250) Cytolethal distending toxin su	6e-10
d1vyba_		236	d.151.1.1 (A:) Endonuclease domain of LINE-1 rever	2e-09
d1sr4b_		261	d.151.1.1 (B:) Cytolethal distending toxin subunit	2e-08
d1wdua_		228	d.151.1.1 (A:) Endonuclease domain of TRAS1 retrot	7e-07
d2a40b1		260	d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos	1e-04
d2ddra1		299	d.151.1.3 (A:7-305) Sphingomyelin phosphodiesteras	8e-04
d1zwxa1		293	d.151.1.3 (A:41-333) Sphingomyelin phosphodiestera	0.001

>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Length = 268	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: DNA-repair enzyme exonuclease III
species: Escherichia coli [TaxId: 562]

 Score = 65.9 bits (159), Expect = 1e-12
 Identities = 38/256 (14%), Positives = 74/256 (28%), Gaps = 18/256 (7%)

Query: 228 RTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKW 287
             +  ++ +   D++ LQ+ K  ++       +  A LG N  +           +  + 
Sbjct: 16  HQLEAIVEKHQPDVIGLQETKVHDDMFPL---EEVAKLGYNVFYHGQKGHYGVALLTKET 72

Query: 288 PIKRWKVQKIFDDTDFRNVLKATVDVPQIGEVNFHCTHLDHLDENWRMKQ---------- 337
           PI   +     D+   R ++ A +          +         +  +K           
Sbjct: 73  PIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNL 132

Query: 338 MNAIIQSNDHGEAHILAGALNSL--DETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKS 395
            N +          ++ G +N    D      E          +      + E M  L S
Sbjct: 133 QNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMS 192

Query: 396 KQYTDS-KDFAGECESVVMIAKGQSVQGTCKYGTRVDYILASPNSPYKFVPGS--YSVFS 452
               D+ +    +          +S       G R+D +LAS       V     Y + S
Sbjct: 193 WGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYEIRS 252

Query: 453 SKGTSDHHIVKVDITK 468
            +  SDH  V     +
Sbjct: 253 MEKPSDHAPVWATFRR 268

PyMOL of d1akoa_

>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Length = 275	Back information, alignment and structure

>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Length = 250	Back information, alignment and structure

>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 236	Back information, alignment and structure

>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Length = 261	Back information, alignment and structure

>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Length = 228	Back information, alignment and structure

>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Length = 260	Back information, alignment and structure

>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Length = 299	Back information, alignment and structure

>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Length = 293	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		509
d1vyba_		236	Endonuclease domain of LINE-1 reverse transcriptas	99.88
d1zwxa1		293	Sphingomyelin phosphodiesterase C {Listeria ivanov	99.87
d2ddra1		299	Sphingomyelin phosphodiesterase C {Bacillus cereus	99.85
d1wdua_		228	Endonuclease domain of TRAS1 retrotransposon (ORF2	99.82
d2imqx1		280	Salivary nitrophorin {Bedbug (Cimex lectularius) [	99.78
d1hd7a_		275	DNA repair endonuclease Hap1 {Human (Homo sapiens)	99.77
d2f1na1		250	Cytolethal distending toxin subunit B {Escherichia	99.76
d1akoa_		268	DNA-repair enzyme exonuclease III {Escherichia col	99.75
d1sr4b_		261	Cytolethal distending toxin subunit B {Haemophilus	99.72
d2a40b1		260	Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913	99.7
d1i9za_		345	Synaptojanin, IPP5C domain {Fission yeast (Schizos	99.52

>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Endonuclease domain of LINE-1 reverse transcriptase homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.6e-22  Score=188.97  Aligned_cols=224  Identities=11%  Similarity=0.095  Sum_probs=137.1

Q ss_pred             eeeecCCCCCcccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEEEec-cCCCCceeEEEEeccceee
Q 010500          214 VSFPTSSIASVGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAE-SWAPEYGNAVLSKWPIKRW  292 (509)
Q Consensus       214 v~~~~~~~~~~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~f~~-s~~g~~GvAILSR~PI~~~  292 (509)
                      ++|+.++.....+...|.++|++.+||||||||+.......    ..+. ..++.+.|.. ......|++|++++|+...
T Consensus         9 ~s~Nv~g~~~~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~g~~i~~k~~~~~~   83 (236)
T d1vyba_           9 LTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDT----HRLK-IKGWRKIYQANGKQKKAGVAILVSDKTDFK   83 (236)
T ss_dssp             EEEECSCCCSHHHHHHHHHHHHHHCCSEEEEECCCCCTTSG----GGCC-CTTCCEEEEECCSSSSCCEEEEECTTCCCE
T ss_pred             EEEEcCCccchhhHHHHHHHHHHCCCeEEEEEcccCccccc----hhhh-hcccceEEEeeccccccceeeEeecccccc
Confidence            46666666556678899999999999999999996443211    0111 1233333333 2345679999999998654


Q ss_pred             eEeeecCCCCCceEEEEEEEeCCccEEEEEEecCCCCChHHHHHHHHHHHHHcC--CCCcEEEEecCCCCCCCCCcchhh
Q 010500          293 KVQKIFDDTDFRNVLKATVDVPQIGEVNFHCTHLDHLDENWRMKQMNAIIQSND--HGEAHILAGALNSLDETDYSSERW  370 (509)
Q Consensus       293 ~~~~l~~~~~~R~~L~a~l~~~g~~~L~VintHL~~~~~~~R~~Q~~~L~~~L~--~~~PvIL~GDFNs~p~s~~~~~~~  370 (509)
                      ... +..+... .+..+.+...+ ..+.++++|+.+.....   ....++..+.  .+.|+|+|||||........    
T Consensus        84 ~~~-~~~~~~~-~~~~~~~~~~~-~~~~~~~~y~~~~~~~~---~~~~~~~~~~~~~~~~~Il~GDfN~~~~~~d~----  153 (236)
T d1vyba_          84 PTK-IKRDKEG-HYIMVKGSIQQ-EELTILNIYAPNTGAPR---FIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDR----  153 (236)
T ss_dssp             EEE-EEECTTS-SEEEEEEEETT-EEEEEEEEECCSSSHHH---HHHHHHHHTTTTCCTTEEEEEECSSCSSGGGB----
T ss_pred             ccc-ccccccc-cceeeeeeecc-CcceeEEecccccccHH---HHHhhhhhhcccccceeEEeeccccccchhhh----
Confidence            332 2222222 35566777776 88999999998533322   2223333332  45799999999976542210    


Q ss_pred             hhHHHhhhhcCCCChhHHHHHHHhhCCceecccccCCCcc-eeEecCCccccCCCCCCCceEEEEeCCCCCCceeeeEEE
Q 010500          371 TDIVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECES-VVMIAKGQSVQGTCKYGTRVDYILASPNSPYKFVPGSYS  449 (509)
Q Consensus       371 ~~i~~~~~~~G~~~~~~~~~~~L~~~glvDa~~~~~~~~~-tT~~~~g~~~~~t~~~~~RIDyIf~S~~~~~kl~v~s~~  449 (509)
                      .      ...............+...++.|+|+..++... ++|....      .....||||||+++....  .+..+.
T Consensus       154 ~------~~~~~~~~~~~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~------~~~~~RiD~il~s~~~~~--~~~~~~  219 (236)
T d1vyba_         154 S------TRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAP------HHTYSKIDHIVGSKALLS--KCKRTE  219 (236)
T ss_dssp             T------TCCCCCHHHHHHHHHHHHTTEEEHHHHHCTTCCCCSEEETT------TTEEECCEEEEEEGGGGG--GEEEEE
T ss_pred             c------ccccchhhHHHHHHHHHhhhcccccceeccCCccccccCCC------CCCCceeEEEEEChHHHh--hceEEE
Confidence            0      000011112345667778899999987665432 3332211      112468999999987422  345667


Q ss_pred             EcCCCCCCCccceEEEEE
Q 010500          450 VFSSKGTSDHHIVKVDIT  467 (509)
Q Consensus       450 Vi~~~~~SDH~PV~adf~  467 (509)
                      +.. ..+|||.||+++|.
T Consensus       220 i~~-~~~SDH~pv~~~lk  236 (236)
T d1vyba_         220 IIT-NYLSDHSAIKLELR  236 (236)
T ss_dssp             EEC-CSSSSSCEEEEEEC
T ss_pred             ECC-CCCCCcccEEEEeC
Confidence            766 46899999999973

PyMOL of d1vyba_

>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]}	Back information, alignment and structure

>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}	Back information, alignment and structure

>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]}	Back information, alignment and structure

>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]}	Back information, alignment and structure

>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure