Citrus Sinensis ID: 010504

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51
MIKQILGRLPRKPSKSSENREFGGSSTPSSNATSGSSSYDLVSNRPVNTDHMPLPGFDSASNLGDGQGSKFPQVGNPRLNGNSVVAPYEALPGFRDVASFEKQNLLIRKLNLCCVLFDFTDPTKNLKEKDVKRQTLLELVDFITSANGKFTETVMQEVIKMVSVNLFRSLSPQPRENKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKVEEIRTQCDASWKRLEEIAAANSTK
cHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
cHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
MIKQIlgrlprkpskssenrefggsstpssnatsgsssydlvsnrpvntdhmplpgfdsasnlgdgqgskfpqvgnprlngnsvvapyealpgfrdvasFEKQNLLIRKLNLCcvlfdftdptknlkekdvKRQTLLELVDFITSANGKFTETVMQEVIKMVSVNLfrslspqprenktlesfdleeeeplmdpawphLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLldlfdsedprEREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIIngfalplkeEHKLFLIRALiplhkpkclamyhqplsyCITQFVEKDCKLADTVIKGLLKywpitnsskEVMFLSELEEVLeatqppefqkcmVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFpalekngcnhWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKVEEIRTQCDASWKRLEEIAAANSTK
mikqilgrlprkpskssenrefggsstpssnatsgsssYDLVSNRPVNTDHMPLPGFDSASNLGDGQGSKFPQVGNPRLNGNSVVAPYEALPGFRDVASFEKQNLLIRKLNLCCVLFDFtdptknlkekdvkrqTLLELVDFITSANGKFTETVMQEVIKMVSVNlfrslspqpreNKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKlldlfdsedpREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKVEEIRTQCDASWKRLEEIAAANSTK
MIKQILGRLPRKPSKSSENREFggsstpssnatsgsssYDLVSNRPVNTDHMPLPGFDSASNLGDGQGSKFPQVGNPRLNGNSVVAPYEALPGFRDVASFEKQNLLIRKLNLCCVLFDFTDPTKNLKEKDVKRQTLLELVDFITSANGKFTETVMQEVIKMVSVNLFRSLSPQPRENKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKVEEIRTQCDASWKRLEEIAAANSTK
**********************************************************************************SVVAPYEALPGFRDVASFEKQNLLIRKLNLCCVLFDFTDPTKNLKEKDVKRQTLLELVDFITSANGKFTETVMQEVIKMVSVNLFR************************DPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKE****VEEIRTQCDASW*************
*IK*****************************************************************************************GFRDVASFEKQNLLIRKLNLCCVLFDFTDPTKNLKEKDVKRQTLLELVDFITSANGKFTETVMQEVIKMVSVNLFRSLSPQPRENKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDEC*********************WKRLE**AA*****
MIKQILGR********************************LVSNRPVNTDHMPLPGFDSASNLGDGQGSKFPQVGNPRLNGNSVVAPYEALPGFRDVASFEKQNLLIRKLNLCCVLFDFTDPTKNLKEKDVKRQTLLELVDFITSANGKFTETVMQEVIKMVSVNLFRSLSPQPRENKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKVEEIRTQCDASWKRLEEIAAANSTK
***************************************************************************************YEALPGFRDVASFEKQNLLIRKLNLCCVLFDFTDPTKNLKEKDVKRQTLLELVDFITSANGKFTETVMQEVIKMVSVNLFRSLSPQP*****LESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKVEEIRTQCDASWKRLEEIAAA****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIKQILGRLPRKPSKSSENREFGGSSTPSSNATSGSSSYDLVSNRPVNTDHMPLPGFDSASNLGDGQGSKFPQVGNPRLNGNSVVAPYEALPGFRDVASFEKQNLLIRKLNLCCVLFDFTDPTKNLKEKDVKRQTLLELVDFITSANGKFTETVMQEVIKMVSVNLFRSLSPQPRENKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKVEEIRTQCDASWKRLEEIAAANSTK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query508 2.2.26 [Sep-21-2011]
Q9LU89510 Serine/threonine protein yes no 0.996 0.992 0.698 0.0
Q8LF36492 Serine/threonine protein no no 0.874 0.902 0.736 0.0
Q8RW96522 Serine/threonine protein no no 0.980 0.954 0.672 0.0
Q9LVE2546 Serine/threonine protein no no 0.962 0.895 0.631 0.0
Q9ZQY6477 Serine/threonine protein no no 0.929 0.989 0.618 1e-180
O04376499 Serine/threonine protein no no 0.950 0.967 0.621 1e-173
O04375495 Serine/threonine protein no no 0.875 0.898 0.638 1e-169
Q93YV6500 Serine/threonine protein no no 0.929 0.944 0.572 1e-158
Q9SV41497 Serine/threonine protein no no 0.885 0.905 0.569 1e-145
Q28653586 Serine/threonine-protein yes no 0.816 0.708 0.566 1e-139
>sp|Q9LU89|2A5N_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1 Back     alignment and function desciption
 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/511 (69%), Positives = 415/511 (81%), Gaps = 5/511 (0%)

Query: 1   MIKQILGRLPRKPSKSSENR----EFGGSSTPSSNATSGSSSYDLVSNRPVNTDHMPLPG 56
           M KQIL +LP K S   E+R        SS+  ++  S S S D  + +    +  P  G
Sbjct: 1   MWKQILSKLPNKKSSKHEHRGREHGGHSSSSSHTSGASTSKSTDNGAAKSHAKNASP-AG 59

Query: 57  FDSASNLGDGQGSKFPQVGNPRLNGNSVVAPYEALPGFRDVASFEKQNLLIRKLNLCCVL 116
             +AS+ G   G+      N   N N V  PYEALP F+DV + EKQNL I+KLNLC V+
Sbjct: 60  KSAASDSGFKDGNLKSSGNNNNNNNNGVFTPYEALPSFKDVPNTEKQNLFIKKLNLCRVV 119

Query: 117 FDFTDPTKNLKEKDVKRQTLLELVDFITSANGKFTETVMQEVIKMVSVNLFRSLSPQPRE 176
           FDFTDPTKN+KEKD+KRQTLLELVD++ S NGKF+E  +QEV++MVS N+FR+L+PQPRE
Sbjct: 120 FDFTDPTKNIKEKDIKRQTLLELVDYVNSPNGKFSEVGIQEVVRMVSANIFRTLNPQPRE 179

Query: 177 NKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLF 236
           NK +++ DLEEEEP MD AWPHLQ+VYE FLRFVASPETD KLAKRYID SFVL+LLDLF
Sbjct: 180 NKVIDALDLEEEEPSMDLAWPHLQLVYELFLRFVASPETDTKLAKRYIDQSFVLRLLDLF 239

Query: 237 DSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSI 296
           DSEDPRER+ LKTILHRIYGKFMVHRPFIRK+INNIF+RF+FETEKHNGIAE LE+LGSI
Sbjct: 240 DSEDPRERDCLKTILHRIYGKFMVHRPFIRKSINNIFYRFVFETEKHNGIAEFLEILGSI 299

Query: 297 INGFALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLK 356
           INGFALPLK+EHK+FL+R LIPLHKPKCL MYHQ LSYCITQFVEKDCKLADTVI+GLLK
Sbjct: 300 INGFALPLKDEHKVFLVRVLIPLHKPKCLQMYHQQLSYCITQFVEKDCKLADTVIRGLLK 359

Query: 357 YWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWN 416
           YWP+TNSSKEVMFL+ELEEVLEATQPPEFQ+CMVPLFRQIA CL+S HFQVAERAL+LWN
Sbjct: 360 YWPVTNSSKEVMFLNELEEVLEATQPPEFQRCMVPLFRQIARCLNSLHFQVAERALFLWN 419

Query: 417 NDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQK 476
           N+HIENLI QNRKVILPIIFPALE+N   HWNQ V +LT+NVRKIF ++DPELF ECL K
Sbjct: 420 NNHIENLIMQNRKVILPIIFPALERNAQKHWNQAVHSLTLNVRKIFHDLDPELFKECLAK 479

Query: 477 FKESEAKVEEIRTQCDASWKRLEEIAAANST 507
           FKE E+K  E   + +A+WKRLEE+    ++
Sbjct: 480 FKEDESKAAETEAKREATWKRLEELGVRKAS 510
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8LF36|2A5T_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform OS=Arabidopsis thaliana GN=B'THETA PE=2 SV=2 Back     alignment and function description
>sp|Q8RW96|2A5G_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform OS=Arabidopsis thaliana GN=B'GAMMA PE=1 SV=2 Back     alignment and function description
>sp|Q9LVE2|2A5Z_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform OS=Arabidopsis thaliana GN=B'ZETA PE=2 SV=2 Back     alignment and function description
>sp|Q9ZQY6|2A5D_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform OS=Arabidopsis thaliana GN=B'DELTA PE=1 SV=1 Back     alignment and function description
>sp|O04376|2A5B_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform OS=Arabidopsis thaliana GN=B'BETA PE=1 SV=1 Back     alignment and function description
>sp|O04375|2A5A_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1 Back     alignment and function description
>sp|Q93YV6|2A5I_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1 Back     alignment and function description
>sp|Q9SV41|2A5E_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform OS=Arabidopsis thaliana GN=B'EPSILON PE=2 SV=1 Back     alignment and function description
>sp|Q28653|2A5D_RABIT Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Oryctolagus cuniculus GN=PPP2R5D PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query508
224107677526 predicted protein [Populus trichocarpa] 0.998 0.963 0.842 0.0
224100073526 predicted protein [Populus trichocarpa] 0.998 0.963 0.830 0.0
255547836524 protein phosphatase 2a, regulatory subun 0.990 0.959 0.837 0.0
307136231524 protein phosphatase 2a [Cucumis melo sub 0.988 0.958 0.755 0.0
449524868524 PREDICTED: serine/threonine protein phos 0.988 0.958 0.753 0.0
449441388524 PREDICTED: LOW QUALITY PROTEIN: serine/t 0.988 0.958 0.751 0.0
449450399525 PREDICTED: serine/threonine protein phos 0.994 0.961 0.752 0.0
224141269530 predicted protein [Populus trichocarpa] 0.996 0.954 0.761 0.0
225425906515 PREDICTED: serine/threonine protein phos 0.988 0.974 0.751 0.0
147834659535 hypothetical protein VITISV_019650 [Viti 0.980 0.930 0.752 0.0
>gi|224107677|ref|XP_002314559.1| predicted protein [Populus trichocarpa] gi|222863599|gb|EEF00730.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  881 bits (2276), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/508 (84%), Positives = 461/508 (90%), Gaps = 1/508 (0%)

Query: 1   MIKQILGRLPRKPSKSSENREFGGSSTPSSNATSGS-SSYDLVSNRPVNTDHMPLPGFDS 59
           MIKQILGRLP+KPSKSSENREFGG S   SN +S S S+ D  SNR    ++   PG DS
Sbjct: 1   MIKQILGRLPKKPSKSSENREFGGPSIAPSNTSSASKSTSDFQSNRLGTLNNSSPPGLDS 60

Query: 60  ASNLGDGQGSKFPQVGNPRLNGNSVVAPYEALPGFRDVASFEKQNLLIRKLNLCCVLFDF 119
           A +LG   G K  Q GNP+LNG+SV  PYEALP FRDV + EKQNL IRKLNLCCV+FDF
Sbjct: 61  APHLGFSHGMKPTQAGNPKLNGSSVPPPYEALPTFRDVPNSEKQNLFIRKLNLCCVVFDF 120

Query: 120 TDPTKNLKEKDVKRQTLLELVDFITSANGKFTETVMQEVIKMVSVNLFRSLSPQPRENKT 179
            DPTKNLKEKD+KRQTLLELVD+ITSANGKFTETVMQEVIK+VSVNLFR  +PQ RENK 
Sbjct: 121 ADPTKNLKEKDIKRQTLLELVDYITSANGKFTETVMQEVIKVVSVNLFRPRTPQTRENKV 180

Query: 180 LESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSE 239
           LE+FDLEEEEP+MDPAWPHLQIVYEFFLRFVASPETDAKLAKRY+DHSFVLKLLDLFDSE
Sbjct: 181 LEAFDLEEEEPMMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYVDHSFVLKLLDLFDSE 240

Query: 240 DPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIING 299
           DPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIING
Sbjct: 241 DPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIING 300

Query: 300 FALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWP 359
           FALPLKEEHKLFL+RALIPLHKPKCL MYHQ LSYCITQFVEKDCKLADTVI+GL KYWP
Sbjct: 301 FALPLKEEHKLFLVRALIPLHKPKCLPMYHQQLSYCITQFVEKDCKLADTVIRGLSKYWP 360

Query: 360 ITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDH 419
           ITNSSKEVMFLSELEEVLEATQP EFQ+CMVPLFRQIA CLSSSHFQVAERALYLWNNDH
Sbjct: 361 ITNSSKEVMFLSELEEVLEATQPAEFQRCMVPLFRQIARCLSSSHFQVAERALYLWNNDH 420

Query: 420 IENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKE 479
           IENLIRQNRKVILPIIFPALEKNG NHWNQVVQ+LTVNVRKIF++IDPELF+ECL++F+E
Sbjct: 421 IENLIRQNRKVILPIIFPALEKNGRNHWNQVVQSLTVNVRKIFADIDPELFEECLRQFQE 480

Query: 480 SEAKVEEIRTQCDASWKRLEEIAAANST 507
           +EAK EEI+T+ +A+WKRLEEIAA  +T
Sbjct: 481 NEAKAEEIKTKQEATWKRLEEIAATKAT 508

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224100073|ref|XP_002311732.1| predicted protein [Populus trichocarpa] gi|222851552|gb|EEE89099.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255547836|ref|XP_002514975.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] gi|223546026|gb|EEF47529.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|307136231|gb|ADN34067.1| protein phosphatase 2a [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|449524868|ref|XP_004169443.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449441388|ref|XP_004138464.1| PREDICTED: LOW QUALITY PROTEIN: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449450399|ref|XP_004142950.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform-like [Cucumis sativus] gi|449494490|ref|XP_004159560.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224141269|ref|XP_002323997.1| predicted protein [Populus trichocarpa] gi|222866999|gb|EEF04130.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225425906|ref|XP_002266932.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform [Vitis vinifera] Back     alignment and taxonomy information
>gi|147834659|emb|CAN66032.1| hypothetical protein VITISV_019650 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query508
TAIR|locus:2009912492 AT1G13460 [Arabidopsis thalian 0.838 0.865 0.770 5.1e-188
TAIR|locus:505006470522 ATB' GAMMA [Arabidopsis thalia 0.978 0.952 0.667 3e-179
TAIR|locus:2089905546 AT3G21650 [Arabidopsis thalian 0.988 0.919 0.637 2.9e-174
TAIR|locus:2092175529 AT3G26020 [Arabidopsis thalian 0.608 0.584 0.641 2.8e-172
TAIR|locus:2092080477 ATB' DELTA "serine/threonine p 0.877 0.935 0.659 5e-166
TAIR|locus:2085099499 ATB' BETA [Arabidopsis thalian 0.816 0.831 0.708 1.5e-164
TAIR|locus:2142619495 ATB' ALPHA [Arabidopsis thalia 0.875 0.898 0.648 5.3e-159
TAIR|locus:2179499500 AT5G25510 [Arabidopsis thalian 0.822 0.836 0.631 1.8e-146
TAIR|locus:2082677497 AT3G54930 [Arabidopsis thalian 0.909 0.929 0.558 1.5e-138
FB|FBgn0042693 984 PP2A-B' "PP2A-B'" [Drosophila 0.814 0.420 0.586 2.3e-135
TAIR|locus:2009912 AT1G13460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1799 (638.3 bits), Expect = 5.1e-188, Sum P(2) = 5.1e-188
 Identities = 329/427 (77%), Positives = 383/427 (89%)

Query:    75 GNPRLNGNSVVAPYEALPGFRDVASFEKQNLLIRKLNLCCVLFDFTDPTKNLKEKDVKRQ 134
             GN + NGN    PYEALPGF+DV + EKQNL +RKL+LCCV+FDF+DPTKN+KEKD+KRQ
Sbjct:    58 GNLKGNGNGFT-PYEALPGFKDVPNAEKQNLFVRKLSLCCVVFDFSDPTKNVKEKDIKRQ 116

Query:   135 TLLELVDFITSANGKFTETVMQEVIKMVSVNLFRSLSPQPRENKTLESFDLEEEEPLMDP 194
             TLLELVD++ S NGKF+ETV+QEV++MVSVN+FR+L+PQPRENK +++ DLEEEEP MDP
Sbjct:   117 TLLELVDYVASPNGKFSETVIQEVVRMVSVNIFRTLNPQPRENKVIDALDLEEEEPSMDP 176

Query:   195 AWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRI 254
              WPHLQ+VYE  LR +ASPETD KLAK+YID SFV +LLDLFDSEDPRER+ LKT+LHRI
Sbjct:   177 TWPHLQLVYEILLRLIASPETDTKLAKKYIDQSFVSRLLDLFDSEDPRERDCLKTVLHRI 236

Query:   255 YGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIR 314
             YGKFMVHRPFIRK+INNIF+RF+FETEKHNGIAE LE+LGSIINGFALPLK+EHK+FL+R
Sbjct:   237 YGKFMVHRPFIRKSINNIFYRFVFETEKHNGIAEFLEILGSIINGFALPLKDEHKVFLVR 296

Query:   315 ALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELE 374
             AL+PLHKPK L MYHQ LSYCITQFVEKDCKLADTVI+GLLK WP+TNSSKEVMFL+ELE
Sbjct:   297 ALVPLHKPKSLQMYHQQLSYCITQFVEKDCKLADTVIRGLLKSWPVTNSSKEVMFLNELE 356

Query:   375 EVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPI 434
             EVLEATQPPEFQ+CMVPLFRQ+A CL+S HFQVAERAL+LWNNDHIENLI QNRKVILPI
Sbjct:   357 EVLEATQPPEFQRCMVPLFRQVARCLNSLHFQVAERALFLWNNDHIENLIMQNRKVILPI 416

Query:   435 IFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKVEEIRTQCDAS 494
             IFPALE+N   HWNQ V +LT+NV+KIF++ID ELF +CL KF+E E+K  EI  + +A+
Sbjct:   417 IFPALERNTQKHWNQAVHSLTLNVQKIFNDIDAELFKDCLAKFREDESKEAEIGAKREAT 476

Query:   495 WKRLEEI 501
             WKRLEEI
Sbjct:   477 WKRLEEI 483
GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0007165 "signal transduction" evidence=IEA;ISS
GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS
GO:0005777 "peroxisome" evidence=IDA
TAIR|locus:505006470 ATB' GAMMA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089905 AT3G21650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092175 AT3G26020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092080 ATB' DELTA "serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085099 ATB' BETA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142619 ATB' ALPHA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179499 AT5G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082677 AT3G54930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0042693 PP2A-B' "PP2A-B'" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q147382A5D_HUMANNo assigned EC number0.56690.81690.6893yesno
Q286532A5D_RABITNo assigned EC number0.56690.81690.7081yesno
Q9LU892A5N_ARATHNo assigned EC number0.69860.99600.9921yesno
Q8LF362A5T_ARATHNo assigned EC number0.73620.87400.9024nono
Q104282AD1_SCHPONo assigned EC number0.51430.81880.7591yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.4979.1
serine/threonine protein phosphatase 2A (508 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query508
pfam01603405 pfam01603, B56, Protein phosphatase 2A regulatory 0.0
PLN00122170 PLN00122, PLN00122, serine/threonine protein phosp 2e-59
PLN00122170 PLN00122, PLN00122, serine/threonine protein phosp 5e-09
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 family) Back     alignment and domain information 
 Score =  599 bits (1546), Expect = 0.0
 Identities = 246/412 (59%), Positives = 315/412 (76%), Gaps = 9/412 (2%)

Query: 94  FRDVASFEKQNLLIRKLNLCCVLFDFTDPTKNLKEKDVKRQTLLELVDFITSAN--GKFT 151
             DV S E ++L ++KL  CCV+ DF+DP  +LK K++KRQTL E+VD++++++  GK T
Sbjct: 1   LPDVPSPEFKDLFLKKLKQCCVICDFSDPNSDLKAKEIKRQTLKEIVDYVSNSDIVGKLT 60

Query: 152 ETVMQEVIKMVSVNLFRSLSPQPRENKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVA 211
           E +  E+ KM++VN+FR L P P       S D +++EP ++P+WPHL +VYE  LRF+ 
Sbjct: 61  EDLYDEIFKMIAVNIFRPLPPIPNP-----SLDPDDDEPFLEPSWPHLSLVYEILLRFIE 115

Query: 212 SPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINN 271
           SP  D    K+YIDHSF+ +LLDLFDS DPRER+ LKT LHRIYGKF   RPFIRKAIN+
Sbjct: 116 SPPFDPL--KKYIDHSFIKRLLDLFDSPDPRERDQLKTFLHRIYGKFPGLRPFIRKAINS 173

Query: 272 IFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLAMYHQP 331
           I +RFI+ETEK NG+AELLE+LGSIINGFALPLKEEHK FL++ L+PLHK K L++YHQ 
Sbjct: 174 ILYRFIYETEKPNGVAELLEILGSIINGFALPLKEEHKDFLLKVLLPLHKSKHLSLYHQQ 233

Query: 332 LSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVP 391
           LSYC+ QF+EKD  LA+ VI+GLLK+WP+TNSSKEV+FL ELEE+LE   P EFQK MVP
Sbjct: 234 LSYCVVQFIEKDPSLAEEVIRGLLKHWPVTNSSKEVLFLDELEEILEKIPPEEFQKIMVP 293

Query: 392 LFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVV 451
           LF+ +A C+SS HFQVAERAL LWNN++  NLI  N K+ILPI+FPAL +N  NHWNQ V
Sbjct: 294 LFKILARCISSPHFQVAERALKLWNNEYFVNLISDNSKLILPILFPALYRNAKNHWNQSV 353

Query: 452 QNLTVNVRKIFSEIDPELFDECLQKFKESEAKVEEIRTQCDASWKRLEEIAA 503
           +NL +NV K+  EIDP+LFDEC  K+KE EAK ++   +   +W R+ E AA
Sbjct: 354 RNLALNVLKLLMEIDPDLFDECGNKYKEKEAKEKKKEKKRKKTWARIAEAAA 405

Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits (See also pfam01240), this family is called the B56 family. Length = 405
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 508
KOG2085457 consensus Serine/threonine protein phosphatase 2A, 100.0
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 100.0
PLN00122170 serine/threonine protein phosphatase 2A; Provision 100.0
PLN00122170 serine/threonine protein phosphatase 2A; Provision 97.77
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 87.82
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-164  Score=1257.94  Aligned_cols=418  Identities=68%  Similarity=1.141  Sum_probs=413.1

Q ss_pred             ccccccCCCCCCCChhHhHHHHHHHHhcccccccccCCCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhHh
Q 010504           85 VAPYEALPGFRDVASFEKQNLLIRKLNLCCVLFDFTDPTKNLKEKDVKRQTLLELVDFITSANGKFTETVMQEVIKMVSV  164 (508)
Q Consensus        85 ~~~~~~LP~~~dv~~~e~~~Lf~~Kl~~C~~ifDFsdp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~l~e~~~~~i~~Mvs~  164 (508)
                      ..++++||+|+|||++|+++||++|+++||++|||+||.+|.++||+||+||+||+||+.+.++++++.+|+++++|+++
T Consensus        39 ~~~l~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~  118 (457)
T KOG2085|consen   39 NVELEPLPSLKDVPSSEQKELFIKKLEQCCVLFDFNDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSV  118 (457)
T ss_pred             CCCceeCCccCcCChhHhHHHHHHHHHhhheeeeccChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence            44599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCCCCCCccccCCCCCCCCCCCCCCCchhhHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhHH
Q 010504          165 NLFRSLSPQPRENKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPRER  244 (508)
Q Consensus       165 NiFR~lPp~~~~~~~~~~~d~eedep~~epaWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fv~~Ll~lfdSeDpRER  244 (508)
                      ||||+|||..++++    +|+|||||++||+|||||+||++|+||++||++|+++||+||||+||++||+||||||||||
T Consensus       119 nifR~lpp~~n~~~----~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRER  194 (457)
T KOG2085|consen  119 NIFRTLPPSVNPTG----FDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPRER  194 (457)
T ss_pred             HhhccCCcccCCCc----CCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHH
Confidence            99999999998753    89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccCChHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCcHHHHHHHHHHHhhcCCCCCC
Q 010504          245 EYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKC  324 (508)
Q Consensus       245 d~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa~PLKeEHk~Fl~rvLiPLHk~~~  324 (508)
                      |+|||+|||||||||+||+|||++|||+||+|||||++|||||||||||||||||||+|||||||+||.||||||||+++
T Consensus       195 e~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~  274 (457)
T KOG2085|consen  195 EFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKS  274 (457)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhHHHHHHHHHHhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCc
Q 010504          325 LAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSH  404 (508)
Q Consensus       325 ~~~yh~qL~yci~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~h  404 (508)
                      ++.||+||+|||+||+||||+|+++||+|||||||+|||+||||||||||||||+++|.+|++||+|||+|||+|++|+|
T Consensus       275 l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~H  354 (457)
T KOG2085|consen  275 LSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPH  354 (457)
T ss_pred             ccccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcchhHHHHHhhccccccccccHHHHhhhcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 010504          405 FQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKV  484 (508)
Q Consensus       405 fqVAErAL~lWnNe~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~la~~vlk~l~e~D~~lf~~~~~~~~~~~~~~  484 (508)
                      ||||||||++|||+||++||++|+++|+|||||+||++++.|||++|+++++||+|+|||||++||++|+++|++++.++
T Consensus       355 FQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec~~~y~~~~~k~  434 (457)
T KOG2085|consen  355 FQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEECLALYKEDRWKE  434 (457)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Q 010504          485 EEIRTQCDASWKRLEEIAAANS  506 (508)
Q Consensus       485 ~~~~~~r~~~W~~l~~~A~~~~  506 (508)
                      ++.+++|+++|++||++|+.++
T Consensus       435 ~~~~~~re~~W~~le~~~~~~~  456 (457)
T KOG2085|consen  435 KETEEKREETWKRLEELAAENP  456 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999998865

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query508
2npp_B449 Structure Of The Protein Phosphatase 2a Holoenzyme 1e-136
2iae_B407 Crystal Structure Of A Protein Phosphatase 2a (Pp2a 1e-134
3fga_B403 Structural Basis Of Pp2a And Sgo Interaction Length 1e-133
2nyl_B388 Crystal Structure Of Protein Phosphatase 2a (Pp2a) 1e-129
2jak_A392 Human Pp2a Regulatory Subunit B56g Length = 392 1e-124
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme Length = 449 Back     alignment and structure 
Iteration: 1

 Score =  482 bits (1241), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 238/427 (55%), Positives = 310/427 (72%), Gaps = 4/427 (0%)
Query: 80  NGNSVVAPYEALPGFRDVASFEKQNLLIRKLNLCCVLFDF-TDPTKNLKEKDVKRQTLLE 138
           N N    P   L   RDV   +++ L I+KL  CCVLFDF +DP  +LK K+VKR  L E
Sbjct: 17  NSNGPFQPV-VLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSE 75
Query: 139 LVDFITSANGKFTETVMQEVIKMVSVNLFRSLSPQPRENKTLESFDLEEEEPLMDPAWPH 198
           +V++IT      TE +  EV+ M +VN+FR+L P    N T   FD EE+EP ++ AWPH
Sbjct: 76  MVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPS--SNPTGAEFDPEEDEPTLEAAWPH 133
Query: 199 LQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKF 258
           LQ+VYEFFLRF+ SP+    +AK+YID  FVL+LL+LFDSEDPRER++LKT LHRIYGKF
Sbjct: 134 LQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKF 193
Query: 259 MVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIP 318
           +  R +IRK INNIF+RFI+ETE HNGIAELLE+LGSIINGFALPLKEEHK+FL++ L+P
Sbjct: 194 LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLP 253
Query: 319 LHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLE 378
           LHK K L++YH  L+YC+ QF+EKD  L + V+  LLKYWP T+S KEVMFL+ELEE+L+
Sbjct: 254 LHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILD 313
Query: 379 ATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPA 438
             +P EF K M PLFRQ+A C+SS HFQVAERALY WNN++I +LI  N   ILPI+FP+
Sbjct: 314 VIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPS 373
Query: 439 LEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKVEEIRTQCDASWKRL 498
           L +N   HWN+ +  L  N  K+F E++ +LFD+C Q+FK  + K +    + + +W ++
Sbjct: 374 LYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKI 433
Query: 499 EEIAAAN 505
           E +A AN
Sbjct: 434 ENLAKAN 440
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 407 Back     alignment and structure
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction Length = 403 Back     alignment and structure
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 388 Back     alignment and structure
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g Length = 392 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query508
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 0.0
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 0.0
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 1e-169
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Length = 449 Back     alignment and structure
 Score =  543 bits (1400), Expect = 0.0
 Identities = 238/435 (54%), Positives = 312/435 (71%), Gaps = 4/435 (0%)

Query: 73  QVGNPRLNGNSVVAPYEALPGFRDVASFEKQNLLIRKLNLCCVLFDF-TDPTKNLKEKDV 131
           ++     N N    P   L   RDV   +++ L I+KL  CCVLFDF +DP  +LK K+V
Sbjct: 10  RMVVDAANSNGPFQP-VVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEV 68

Query: 132 KRQTLLELVDFITSANGKFTETVMQEVIKMVSVNLFRSLSPQPRENKTLESFDLEEEEPL 191
           KR  L E+V++IT      TE +  EV+ M +VN+FR+L P    N T   FD EE+EP 
Sbjct: 69  KRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSS--NPTGAEFDPEEDEPT 126

Query: 192 MDPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTIL 251
           ++ AWPHLQ+VYEFFLRF+ SP+    +AK+YID  FVL+LL+LFDSEDPRER++LKT L
Sbjct: 127 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTL 186

Query: 252 HRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLF 311
           HRIYGKF+  R +IRK INNIF+RFI+ETE HNGIAELLE+LGSIINGFALPLKEEHK+F
Sbjct: 187 HRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIF 246

Query: 312 LIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLS 371
           L++ L+PLHK K L++YH  L+YC+ QF+EKD  L + V+  LLKYWP T+S KEVMFL+
Sbjct: 247 LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLN 306

Query: 372 ELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVI 431
           ELEE+L+  +P EF K M PLFRQ+A C+SS HFQVAERALY WNN++I +LI  N   I
Sbjct: 307 ELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKI 366

Query: 432 LPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKVEEIRTQC 491
           LPI+FP+L +N   HWN+ +  L  N  K+F E++ +LFD+C Q+FK  + K +    + 
Sbjct: 367 LPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKER 426

Query: 492 DASWKRLEEIAAANS 506
           + +W ++E +A AN 
Sbjct: 427 EEAWVKIENLAKANP 441
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Length = 403 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Length = 392 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query508
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 100.0
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
1ibr_B 462 P95, importin beta-1 subunit, nuclear factor; smal 93.68
1qgr_A 876 Protein (importin beta subunit); transport recepto 92.16
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 89.5
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 89.22
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 86.65
2x19_B963 Importin-13; nuclear transport, protein transport; 86.32
1qgr_A 876 Protein (importin beta subunit); transport recepto 86.18
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 85.24
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 84.27
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
Probab=100.00  E-value=4.2e-145  Score=1135.76  Aligned_cols=401  Identities=56%  Similarity=1.019  Sum_probs=395.0

Q ss_pred             ChhHhHHHHHHHHhcccccccc-cCCCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhHhhcccCCCCCCCC
Q 010504           98 ASFEKQNLLIRKLNLCCVLFDF-TDPTKNLKEKDVKRQTLLELVDFITSANGKFTETVMQEVIKMVSVNLFRSLSPQPRE  176 (508)
Q Consensus        98 ~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~l~e~~~~~i~~Mvs~NiFR~lPp~~~~  176 (508)
                      |++||++||++||++||++||| +||.+|+++|++||+||+||+|||+++++++||++|+++++||++||||++||++++
T Consensus         1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~~   80 (403)
T 3fga_B            1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNP   80 (403)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSSC
T ss_pred             ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence            6789999999999999999999 899999999999999999999999999999999999999999999999999998876


Q ss_pred             CccccCCCCCCCCCCCCCCCchhhHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 010504          177 NKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYG  256 (508)
Q Consensus       177 ~~~~~~~d~eedep~~epaWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fv~~Ll~lfdSeDpRERd~LKtiLHriYg  256 (508)
                      ++  .+||+|||||++||+|||||+||++|+||++|+++++++||+|||++||++|+++||||||||||+|||+||||||
T Consensus        81 ~~--~~~d~eedep~~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~  158 (403)
T 3fga_B           81 TG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYG  158 (403)
T ss_dssp             CS--TTCCGGGCCCCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             cc--ccCCccccccccccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence            43  3799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCChHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCcHHHHHHHHHHHhhcCCCCCCccccchhHHHHH
Q 010504          257 KFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCI  336 (508)
Q Consensus       257 Kf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa~PLKeEHk~Fl~rvLiPLHk~~~~~~yh~qL~yci  336 (508)
                      ||+++|+|||++|||+||+||||+++||||||||||+||||||||+|||+||++||.||||||||+++++.||+||+|||
T Consensus       159 kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv  238 (403)
T 3fga_B          159 KFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCV  238 (403)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhc
Q 010504          337 TQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWN  416 (508)
Q Consensus       337 ~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWn  416 (508)
                      +||++|||+|+++|++|||||||+|||+||||||+||++||+.++|++|+++++|||++||+|++|+|||||||||++||
T Consensus       239 ~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn  318 (403)
T 3fga_B          239 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN  318 (403)
T ss_dssp             HHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG
T ss_pred             HHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHhhccccccccccHHHHhhhcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010504          417 NDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKVEEIRTQCDASWK  496 (508)
Q Consensus       417 Ne~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~la~~vlk~l~e~D~~lf~~~~~~~~~~~~~~~~~~~~r~~~W~  496 (508)
                      |++|+++|++|+++|+|+|+|+|++++++|||++|+++|++|+|+||||||++|++|+++|+++++++++++++|+++|+
T Consensus       319 Ne~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~  398 (403)
T 3fga_B          319 NEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWV  398 (403)
T ss_dssp             CHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 010504          497 RLEE  500 (508)
Q Consensus       497 ~l~~  500 (508)
                      +||+
T Consensus       399 ~~~~  402 (403)
T 3fga_B          399 KIEN  402 (403)
T ss_dssp             TCSC
T ss_pred             HHhc
Confidence            9874
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 508
d2jaka1343 a.118.1.20 (A:30-372) Serine/threonine-protein pho 1e-178
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 343 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  502 bits (1295), Expect = e-178
 Identities = 211/344 (61%), Positives = 265/344 (77%), Gaps = 3/344 (0%)

Query: 95  RDVASFEKQNLLIRKLNLCCVLFDF-TDPTKNLKEKDVKRQTLLELVDFITSANGKFTET 153
           RDV   +++ L I+KL  CCVLFDF +DP  +LK K+VKR  L E+V++IT      TE 
Sbjct: 2   RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 61

Query: 154 VMQEVIKMVSVNLFRSLSPQPRENKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASP 213
           +  EV+ M +VN+FR+L P    N T   FD EE+EP ++ AWPHLQ+VYEFFLRF+ SP
Sbjct: 62  IYPEVVHMFAVNMFRTLPPSS--NPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 119

Query: 214 ETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIF 273
           +    +AK+YID  FVL+LL+LFDSEDPRER++LKT LHRIYGKF+  R +IRK INNIF
Sbjct: 120 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 179

Query: 274 FRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLS 333
           +RFI+ETE HNGIAELLE+LGSIINGFALPLKEEHK+FL++ L+PLHK K L++YH  L+
Sbjct: 180 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 239

Query: 334 YCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLF 393
           YC+ QF+EKD  L + V+  LLKYWP T+S KEVMFL+ELEE+L+  +P EF K M PLF
Sbjct: 240 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 299

Query: 394 RQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFP 437
           RQ+A C+SS HFQVAERALY WNN++I +LI  N   ILPI+FP
Sbjct: 300 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFP 343

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query508
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 100.0
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 86.57
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 82.44
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 82.18
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-122  Score=946.57  Aligned_cols=342  Identities=61%  Similarity=1.081  Sum_probs=324.2

Q ss_pred             CCCCChhHhHHHHHHHHhcccccccc-cCCCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhHhhcccCCCC
Q 010504           94 FRDVASFEKQNLLIRKLNLCCVLFDF-TDPTKNLKEKDVKRQTLLELVDFITSANGKFTETVMQEVIKMVSVNLFRSLSP  172 (508)
Q Consensus        94 ~~dv~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~l~e~~~~~i~~Mvs~NiFR~lPp  172 (508)
                      |+|||++||++||++||++||++||| +||++|+++|++||++|+||++|+++++++++|++++++++||++||||++||
T Consensus         1 l~d~~~~e~~~lf~~Kl~~C~~i~DF~~d~~~d~~~K~~K~~~L~el~~~~~~~~~~l~e~~~~~i~~Mi~~NifR~lPp   80 (343)
T d2jaka1           1 IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPP   80 (343)
T ss_dssp             CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHCSCCCC
T ss_pred             CCCCChHHHHHHHHHHHHHhCcccCCCCCccccHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            68999999999999999999999999 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccCCCCCCCCCCCCCCCchhhHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 010504          173 QPRENKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILH  252 (508)
Q Consensus       173 ~~~~~~~~~~~d~eedep~~epaWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fv~~Ll~lfdSeDpRERd~LKtiLH  252 (508)
                      .+++.  .++||+|||||++||||||||+||++|+||++|+++|++.+++|||++||.+|+++|+|+||||||+||++||
T Consensus        81 ~~~~~--~~~~~~e~d~~~~e~sWpHL~lVY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~  158 (343)
T d2jaka1          81 SSNPT--GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLH  158 (343)
T ss_dssp             -----------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCCcc--ccccCccccccccCCCCchHHHHHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            97653  3479999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccccCChHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCcHHHHHHHHHHHhhcCCCCCCccccchhH
Q 010504          253 RIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLAMYHQPL  332 (508)
Q Consensus       253 riYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa~PLKeEHk~Fl~rvLiPLHk~~~~~~yh~qL  332 (508)
                      ||||||+++|+|||++|+|+|++||||+++||||+|||||+|||||||++|||+||+.|+.++|+||||+++++.||+||
T Consensus       159 ~iy~kf~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL  238 (343)
T d2jaka1         159 RIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL  238 (343)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHH
Q 010504          333 SYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERAL  412 (508)
Q Consensus       333 ~yci~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL  412 (508)
                      +||++||++|||+|+.++++||+||||+||++|||+||+||++||+.+++++|+++++|+|++||+|++|+|||||||||
T Consensus       239 ~~~v~~f~~kDp~l~~~~i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~~~~lf~~la~ci~S~h~qVAErAl  318 (343)
T d2jaka1         239 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERAL  318 (343)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcchhHHHHHhhccccccccccH
Q 010504          413 YLWNNDHIENLIRQNRKVILPIIFP  437 (508)
Q Consensus       413 ~lWnNe~i~~li~~n~~~IlPii~p  437 (508)
                      ++|+|++|+++|++|+++|+|+|+|
T Consensus       319 ~~w~N~~~~~li~~n~~~i~Pii~P  343 (343)
T d2jaka1         319 YYWNNEYIMSLISDNAAKILPIMFP  343 (343)
T ss_dssp             GGGGCHHHHHHHHHTHHHHTTTSCC
T ss_pred             HHHCCHHHHHHHHhCccceEeeeCC
Confidence            9999999999999999999999997
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure