Citrus Sinensis ID: 010514

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51
MVRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCFPLPDLSHVMGKNREELLAMAKEHQQVKKELPTVAELALKEDAPFSTRMKPETRKEDTTRQSSSGLTTVEVNSIDPSNGNAFSFKKASNMTQVKESVKVEVLAEPQSDRSIGEKKLRTSGDERPSMKELSGYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFILERNLLFPDPFERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENGQRVKESGQAGPSGKVLQRPNSLKEVEVSPRGVVRGSTSLQPFGNDSYSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQA
cEEEEccccccccccHHHHHccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHHcccccc
cEEEEEEEcccccEEEHHEccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHccccccccccHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccHHHccccccHHHHHHccccHHHcccccccccccccccHHHHcccccHHHcccHcccccHHHHccccccccccccccccccHHHcccccccccccHHcccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccccc
mvrikcamcsdfdlcVECFSvgaqiyphesnhpyrvmdnlsfplicpdwnaDEEILLLEGIemygfgnwgevsehvgtksksQCIDHYnaiymnspcfplpdlshvmgKNREELLAMAKEHQQVKKELPTVAELalkedapfstrmkpetrkedttrqsssglttvevnsidpsngnafsfkkasnmtqVKESVKVEVlaepqsdrsigekklrtsgderpsmkelsgynfkrqefeieYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFIlernllfpdpfernlspeeREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENGqrvkesgqagpsgkvlqrpnslkevevsprgvvrgstslqpfgndsysTIASsledwdisgfvgadLLSETEKRLCGEIKILPAHYLKMLEILSVEIykgnvskksdahnlfkvepnkvdRVYDMLVRKGIAQA
MVRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCFPLPDLSHVMGKNREELLAMAKEHQQVKKELPtvaelalkedapfstrmkpetrkedttrqsssglttvevnsidpsnGNAFSFKKASNMTQVKESVKvevlaepqsdrsigekklrtsgderpsmkelsgynfkrqeFEIEYDNDAEHLLADMEfnkndtdaerelklRVLRiygkrlderkrrkdfilernllfpdpfernlspeEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQEAQAAGCRTSSEAHRFLEQKRkkeaeengqrvkesgqagpsgkvlqrpnslkevevsprgvvrgstslqpfgndSYSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNvskksdahnlfkvepnkvdrvYDMLVRKGIAQA
MVRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCFPLPDLSHVMGKNREELLAMAKEHQQVKKELPTVAELALKEDAPFSTRMKPETRKEDTTRQSSSGLTTVEVNSIDPSNGNAFSFKKASNMTQVKESVKVEVLAEPQSDRSIGEKKLRTSGDERPSMKELSGYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFILERNLLFPDPFERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENGQRVKESGQAGPSGKVLQRPNSLKEVEVSPRGVVRGSTSLQPFGNDSYSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQA
**RIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCFPLPDLSHVM********************************************************************************************************************************FEIEYDNDAEHLLADM**********RELKLRVLRIYGKRLDERKRRKDFILERNLLFPDPFERNL****REIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRI*******************************************************************************YSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVR******
MVRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCFPLPD*****************************************************************************************ESVKVEVLAEPQSDRSI***************************FEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFILERNLLFPDP******PEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQEAQAAG***************************************************************************SLEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIY*****KKSDAHNLFKVEPNKVDRVYDMLVRKGIAQA
MVRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCFPLPDLSHVMGKNREELLAMAKEHQQVKKELPTVAELALKEDAPFSTR******************TTVEVNSIDPSNGNAFSFKKASNMTQVKESVKVEVLAEPQSDRSIGEKKLRTSGDERPSMKELSGYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFILERNLLFPDPFERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQEL***********SEAHRFLE********************************LKEVEVSPRGVVRGSTSLQPFGNDSYSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQA
MVRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCFPLPDLSHVMGKNREELLAMAKEHQQVKKE**************************************************AFSFKKASNMTQVKESV********Q*****GEKKLRTSGDERPSMKELSGYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFILERNLLFPDPFERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENG*****************************************************LEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGI***
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MVRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCFPLPDLSHVMGKNREELLAMAKEHQQVKKELPTVAELALKEDAPFSTRMKPETRKEDTTRQSSSGLTTVEVNSIDPSNGNAFSFKKASNMTQVKESVKVEVLAEPQSDRSIGEKKLRTSGDERPSMKELSGYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFILERNLLFPDPFERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENGQRVKESGQAGPSGKVLQRPNSLKEVEVSPRGVVRGSTSLQPFGNDSYSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query508 2.2.26 [Sep-21-2011]
Q75LL6567 Transcriptional adapter A yes no 0.962 0.862 0.587 1e-168
Q9SFD5548 Transcriptional adapter A yes no 0.942 0.874 0.577 1e-163
Q9ATB4487 Transcriptional adapter A no no 0.840 0.876 0.533 1e-145
Q02336434 Transcriptional adapter 2 yes no 0.212 0.248 0.367 4e-27
Q9P7J7437 Transcriptional adapter 2 yes no 0.194 0.226 0.43 6e-25
Q6AYE3443 Transcriptional adapter 2 yes no 0.537 0.616 0.285 9e-23
Q8CHV6443 Transcriptional adapter 2 yes no 0.537 0.616 0.285 1e-22
O75478443 Transcriptional adapter 2 yes no 0.537 0.616 0.281 1e-22
Q3SZP8443 Transcriptional adapter 2 yes no 0.537 0.616 0.285 1e-22
Q503N9486 Transcriptional adapter 2 yes no 0.192 0.201 0.411 2e-18
>sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica GN=ADA2 PE=2 SV=2 Back     alignment and function desciption
 Score =  592 bits (1527), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 298/507 (58%), Positives = 370/507 (72%), Gaps = 18/507 (3%)

Query: 2   VRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGI 61
           +RIKC+ C DFDLCVECFSVGA++ PH SNHPYRVMDNLSFPLICPDWNADEEILLLEGI
Sbjct: 64  IRIKCSKCPDFDLCVECFSVGAEVTPHRSNHPYRVMDNLSFPLICPDWNADEEILLLEGI 123

Query: 62  EMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCFPLPDLSHVMGKNREELLAMAKEH 121
           EMYG GNW EV+EHVGTK+K+QCIDHY   YMNSPC+PLPD+SHV GKNR+ELLAMAK  
Sbjct: 124 EMYGLGNWAEVAEHVGTKTKAQCIDHYTTAYMNSPCYPLPDMSHVNGKNRKELLAMAKVQ 183

Query: 122 QQVKKELPTVAELALKEDAPFSTRMKPETRKEDTTRQSSSGLTTVEVNSIDPSNGNAFSF 181
            + KK LP   +L  K+++PFS    P  + ED   +  +G +        PS+    + 
Sbjct: 184 GESKKVLP--GDLTPKDESPFSP---PRVKVEDALGEGLAGRS--------PSHIAGGAN 230

Query: 182 KKASNMTQVKESVKVEVLAEPQSDRSIGEKKLRTSGDERPSMKELSGYNFKRQEFEIEYD 241
           KKASN+ Q K+   V  + +   DRSIG KK R S DE PS+ ELSGYN KR EF+ EYD
Sbjct: 231 KKASNVGQFKDGANVAKVEDGHVDRSIGVKKPRYSADEGPSLTELSGYNSKRHEFDPEYD 290

Query: 242 NDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFILERNLLFPDPFERNL 301
           NDAE  LA+MEF + D++ +RELKLRVLRIY  RLDERKRRK+FILERNLLFP+P E++L
Sbjct: 291 NDAEQALAEMEFKETDSETDRELKLRVLRIYLSRLDERKRRKEFILERNLLFPNPLEKDL 350

Query: 302 SPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQEAQAAGCRTSSEAHRF 361
           + E++E+Y +YKVFMRF SKE+HE L++SV+EE +I +RIQELQE ++AGCRT +EA   
Sbjct: 351 TNEDKEVYHRYKVFMRFLSKEEHEALVRSVLEERKIRRRIQELQECRSAGCRTLAEAKIH 410

Query: 362 LEQKRKKEAEENGQRVKESGQAGPSGKVLQRPNSLKEVEVSPR-GVVRGSTSLQPFGNDS 420
           +EQKRKKE E N Q+ KESGQ   + KV+ + N   ++E        +G  SL   G DS
Sbjct: 411 IEQKRKKEHEVNAQKAKESGQLLSNTKVVHKTNRPMKIESDGNLDQKKGGASLDSTGRDS 470

Query: 421 YSTIASS----LEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNV 476
             T   +     +DWDI GF GA+LLS +EK LC + ++LP HYLKM E+L  EI+KG+V
Sbjct: 471 PKTTGHAGTKHWDDWDIVGFPGAELLSTSEKNLCCQNRLLPNHYLKMQEVLMQEIFKGSV 530

Query: 477 SKKSDAHNLFKVEPNKVDRVYDMLVRK 503
           +KK DAH LFKV+P KVD VYDM+ +K
Sbjct: 531 AKKEDAHVLFKVDPAKVDNVYDMVTKK 557
Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9SFD5|TAD2A_ARATH Transcriptional adapter ADA2a OS=Arabidopsis thaliana GN=ADA2A PE=1 SV=1 Back     alignment and function description
>sp|Q9ATB4|TAD2B_ARATH Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1 SV=1 Back     alignment and function description
>sp|Q02336|ADA2_YEAST Transcriptional adapter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ADA2 PE=1 SV=1 Back     alignment and function description
>sp|Q9P7J7|ADA2_SCHPO Transcriptional adapter 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ada2 PE=1 SV=1 Back     alignment and function description
>sp|Q6AYE3|TAD2A_RAT Transcriptional adapter 2-alpha OS=Rattus norvegicus GN=Tada2a PE=2 SV=1 Back     alignment and function description
>sp|Q8CHV6|TAD2A_MOUSE Transcriptional adapter 2-alpha OS=Mus musculus GN=Tada2a PE=1 SV=1 Back     alignment and function description
>sp|O75478|TAD2A_HUMAN Transcriptional adapter 2-alpha OS=Homo sapiens GN=TADA2A PE=1 SV=3 Back     alignment and function description
>sp|Q3SZP8|TAD2A_BOVIN Transcriptional adapter 2-alpha OS=Bos taurus GN=TADA2A PE=2 SV=1 Back     alignment and function description
>sp|Q503N9|TAD2B_DANRE Transcriptional adapter 2-beta OS=Danio rerio GN=tada2b PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query508
255538484552 transcriptional adaptor, putative [Ricin 0.960 0.884 0.708 0.0
224129158561 histone acetyltransferase complex compon 0.952 0.862 0.685 0.0
356551285577 PREDICTED: transcriptional adapter ADA2- 0.970 0.854 0.655 0.0
359485830563 PREDICTED: transcriptional adapter ADA2- 0.968 0.873 0.665 0.0
449444166558 PREDICTED: transcriptional adapter ADA2- 0.970 0.883 0.641 0.0
147811776573 hypothetical protein VITISV_017127 [Viti 0.968 0.858 0.647 0.0
359495620553 PREDICTED: transcriptional adapter ADA2b 0.948 0.871 0.625 1e-177
357462513565 Histone acetyltransferase complex compon 0.972 0.874 0.618 1e-174
297736705539 unnamed protein product [Vitis vinifera] 0.923 0.870 0.617 1e-174
115455373567 Os03g0750800 [Oryza sativa Japonica Grou 0.962 0.862 0.587 1e-166
>gi|255538484|ref|XP_002510307.1| transcriptional adaptor, putative [Ricinus communis] gi|223551008|gb|EEF52494.1| transcriptional adaptor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/514 (70%), Positives = 427/514 (83%), Gaps = 26/514 (5%)

Query: 1   MVRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEG 60
            +RIKCA+C DFDLCVECFSVGA++ PH+S+HPYRVMDNLSFPLICPDWNADEEILLLEG
Sbjct: 59  FIRIKCAVCPDFDLCVECFSVGAEVTPHKSSHPYRVMDNLSFPLICPDWNADEEILLLEG 118

Query: 61  IEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCFPLPDLSHVMGKNREELLAMAKE 120
           IEMYGFGNW EV+EHVGTKSKS+CIDHYNAIYMNSPCFPLPD+SHVMGK+REEL+AMAK 
Sbjct: 119 IEMYGFGNWAEVAEHVGTKSKSKCIDHYNAIYMNSPCFPLPDMSHVMGKSREELVAMAKG 178

Query: 121 HQQVKKELPTVAELALKEDAPFSTRMKPET-RKEDTTRQSSSGLTTVEVNSIDPSNGNAF 179
             ++KKE P V +L L E++P S+R+K E+ +KED   +SSS +              A 
Sbjct: 179 QCEIKKEFPAVGDLVLNEESPLSSRIKSESWKKEDVACKSSSSI-------------KAD 225

Query: 180 SFKKASNMTQVKESVKVEVLAEPQSDRSIGEKKLRTSGDERPSMKELSGYNFKRQEFEIE 239
           + KKASN  Q+K+ +KVE   E  +D SIGEKKLR SG+E+PSM ELSGYN KR EFEIE
Sbjct: 226 AVKKASNTNQIKDGIKVE---ESLADWSIGEKKLRISGEEQPSMTELSGYNSKRHEFEIE 282

Query: 240 YDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFILERNLLFPDPFER 299
           YDNDAE +LADMEF  +DTDAERELKLRVLRIY KRLDERKRRKDFILERNLL+PDPFE 
Sbjct: 283 YDNDAEQILADMEFKASDTDAERELKLRVLRIYSKRLDERKRRKDFILERNLLYPDPFEV 342

Query: 300 NLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQEAQAAGCRTSSEAH 359
           NLS EER IY +YKVFMRFHSKE+HEEL+KSVIEE+RIVKRIQ+LQ+A+AAGC+T++E +
Sbjct: 343 NLSQEERAIYDRYKVFMRFHSKEEHEELMKSVIEEYRIVKRIQDLQDARAAGCQTAAELN 402

Query: 360 RFLEQKRKKEAEENGQRVKESGQAGPSGKVLQRPNSLK-EVEVSPRGVVRGSTSLQPFGN 418
           RFLE+KRKKE++E+ QRVKES    PSGKVLQR +SLK E + SPRGVV GST L   G 
Sbjct: 403 RFLEEKRKKESDESAQRVKES----PSGKVLQRTSSLKVEADGSPRGVVTGSTGLHNSGK 458

Query: 419 DSYST----IASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKG 474
           DS  T    I+SSL+ WDISGF+GA LLSE EK LCGEI+ILP+HYL ML+ ++VEI KG
Sbjct: 459 DSSLTITKQISSSLDHWDISGFLGAGLLSECEKHLCGEIRILPSHYLNMLQTMAVEIMKG 518

Query: 475 NVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQA 508
            ++KKSDAH LFKVEP+KVD+VYDMLV+KG+AQA
Sbjct: 519 TITKKSDAHRLFKVEPSKVDKVYDMLVKKGMAQA 552

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224129158|ref|XP_002320515.1| histone acetyltransferase complex component [Populus trichocarpa] gi|222861288|gb|EEE98830.1| histone acetyltransferase complex component [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356551285|ref|XP_003544007.1| PREDICTED: transcriptional adapter ADA2-like [Glycine max] Back     alignment and taxonomy information
>gi|359485830|ref|XP_002268970.2| PREDICTED: transcriptional adapter ADA2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449444166|ref|XP_004139846.1| PREDICTED: transcriptional adapter ADA2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147811776|emb|CAN61657.1| hypothetical protein VITISV_017127 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359495620|ref|XP_002262737.2| PREDICTED: transcriptional adapter ADA2b-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357462513|ref|XP_003601538.1| Histone acetyltransferase complex component [Medicago truncatula] gi|357469929|ref|XP_003605249.1| Histone acetyltransferase complex component [Medicago truncatula] gi|355490586|gb|AES71789.1| Histone acetyltransferase complex component [Medicago truncatula] gi|355506304|gb|AES87446.1| Histone acetyltransferase complex component [Medicago truncatula] Back     alignment and taxonomy information
>gi|297736705|emb|CBI25741.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|115455373|ref|NP_001051287.1| Os03g0750800 [Oryza sativa Japonica Group] gi|121957980|sp|Q75LL6.2|TADA2_ORYSJ RecName: Full=Transcriptional adapter ADA2 gi|108711105|gb|ABF98900.1| transcriptional adaptor, putative, expressed [Oryza sativa Japonica Group] gi|113549758|dbj|BAF13201.1| Os03g0750800 [Oryza sativa Japonica Group] gi|215704213|dbj|BAG93053.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query508
TAIR|locus:2130609487 ADA2B "homolog of yeast ADA2 2 0.391 0.408 0.599 7.5e-57
DICTYBASE|DDB_G0280079914 ada2 "transcriptional adapter 0.234 0.130 0.561 2.4e-68
SGD|S000002856434 ADA2 "Transcription coactivato 0.251 0.294 0.367 2e-54
CGD|CAL0000716445 ADA2 [Candida albicans (taxid: 0.535 0.611 0.316 5.9e-52
UNIPROTKB|Q59WH0445 ADA2 "Putative uncharacterized 0.535 0.611 0.316 5.9e-52
GENEDB_PFALCIPARUM|PF10_0143 2578 PF10_0143 "transcriptional act 0.635 0.125 0.293 3.4e-50
UNIPROTKB|Q8IJP9 2578 PF10_0143 "Transcriptional act 0.635 0.125 0.293 3.4e-50
ASPGD|ASPL0000000727517 adaB [Emericella nidulans (tax 0.287 0.282 0.384 3.6e-49
POMBASE|SPCC24B10.08c437 ada2 "SAGA complex subunit Ada 0.194 0.226 0.43 4.7e-47
UNIPROTKB|E1C6E2443 TADA2A "Transcriptional adapte 0.537 0.616 0.285 8.1e-45
TAIR|locus:2130609 ADA2B "homolog of yeast ADA2 2B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 121/202 (59%), Positives = 155/202 (76%)

Query:   194 VKVE-VLAEPQSDRSIGEKKLRTSGDERPSMKELSGYNFKRQEFEIEYDNDAEHLLADME 252
             VKVE    E   DRS G KK   S     S+ ELS YN KR+EF+ EYDNDAE LLA+ME
Sbjct:   198 VKVEDTQKESFVDRSFGGKK-PVSTSVNNSLVELSNYNQKREEFDPEYDNDAEQLLAEME 256

Query:   253 FNKNDTDAERELKLRVLRIYGKRLDERKRRKDFILERNLLFPDPFERNLSPEEREIYQQY 312
             F +NDT  E ELKLRVLRIY KRLDERKRRK+FI+ERNLL+P+PFE++LS EE+   ++ 
Sbjct:   257 FKENDTPEEHELKLRVLRIYSKRLDERKRRKEFIIERNLLYPNPFEKDLSQEEKVQCRRL 316

Query:   313 KVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQEAQAAGCRTSSEAHRFLEQKRKKEAEE 372
              VFMRFHSKE+H+ELL++V+ E+R+VKR+++L+EAQ AGCR+++EA R+L +KRK+E EE
Sbjct:   317 DVFMRFHSKEEHDELLRNVVSEYRMVKRLKDLKEAQVAGCRSTAEAERYLGRKRKRENEE 376

Query:   373 NGQRVKESGQAGP-SGKVLQRP 393
                R KESGQ G  +G++  RP
Sbjct:   377 GMNRGKESGQFGQIAGEMGSRP 398
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009631 "cold acclimation" evidence=IMP
GO:0003713 "transcription coactivator activity" evidence=IDA
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0009735 "response to cytokinin stimulus" evidence=IMP
GO:0042127 "regulation of cell proliferation" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
DICTYBASE|DDB_G0280079 ada2 "transcriptional adapter 2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
SGD|S000002856 ADA2 "Transcription coactivator" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0000716 ADA2 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59WH0 ADA2 "Putative uncharacterized protein ADA2" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF10_0143 PF10_0143 "transcriptional activator ADA2, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IJP9 PF10_0143 "Transcriptional activator ADA2, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
ASPGD|ASPL0000000727 adaB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPCC24B10.08c ada2 "SAGA complex subunit Ada2" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|E1C6E2 TADA2A "Transcriptional adapter 2-alpha" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SFD5TAD2A_ARATHNo assigned EC number0.57780.94290.8740yesno
Q75LL6TADA2_ORYSJNo assigned EC number0.58770.96250.8624yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
HXA903
histone acetyltransferase complex component (501 aa)
(Populus trichocarpa)
Predicted Functional Partners:
HAG903
histone acetyltransferase (450 aa)
    • • 0.420

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query508
COG5114432 COG5114, COG5114, Histone acetyltransferase comple 1e-34
COG5114432 COG5114, COG5114, Histone acetyltransferase comple 2e-30
cd0233549 cd02335, ZZ_ADA2, Zinc finger, ZZ type 2e-16
pfam0443380 pfam04433, SWIRM, SWIRM domain 1e-10
COG5259531 COG5259, RSC8, RSC chromatin remodeling complex su 2e-10
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 3e-10
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 5e-10
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 2e-09
cd0224946 cd02249, ZZ, Zinc finger, ZZ type 3e-07
cd0233849 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type 4e-06
smart0029144 smart00291, ZnF_ZZ, Zinc-binding domain, present i 4e-06
pfam0056946 pfam00569, ZZ, Zinc finger, ZZ type 5e-05
cd0234549 cd02345, ZZ_dah, Zinc finger, ZZ type 4e-04
cd0234043 cd02340, ZZ_NBR1_like, Zinc finger, ZZ type 0.001
cd0234348 cd02343, ZZ_EF, Zinc finger, ZZ type 0.003
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 0.004
cd1166050 cd11660, SANT_TRF, Telomere repeat binding factor- 0.004
>gnl|CDD|227445 COG5114, COG5114, Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information 
 Score =  134 bits (339), Expect = 1e-34
 Identities = 76/288 (26%), Positives = 122/288 (42%), Gaps = 22/288 (7%)

Query: 221 PSMKELSGYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERK 280
           P   E+ GY   R EF++EY N+AE  + DM F+ +  + +++LK   L IY  RL  R 
Sbjct: 157 PYCHEIQGYMPGRLEFDVEYMNEAEVPIKDMSFDGDKEELKKKLKNATLDIYNSRLTFRA 216

Query: 281 RRKDFILERNLLFPDPFERN---LSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRI 337
           RRK  I  +NL+     +      S EE  +    K F R+ +K D     + ++E   I
Sbjct: 217 RRKHAIFGKNLMDYRNLQAKDKKRSKEECGLVNSIKWFARYLTKSDFNVFFRDILEGVYI 276

Query: 338 VKRIQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENGQRVKESGQAGPSGKVLQRPNSLK 397
            KRI ELQE +  G  T     ++   K +K        + E G +        R N+  
Sbjct: 277 EKRIHELQEWRNNGLTTLEAGLKYERDKFEKFGASTAASLSE-GNSRYRSNSAHRSNAEY 335

Query: 398 EVEVSPRGVVRGSTSLQPFGNDSYSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILP 457
                   +   + ++    +                      LLS+ E+RLC  + I P
Sbjct: 336 SQMDVKNILPSKNMTISDIQHAPDYA-----------------LLSDDEQRLCETLNISP 378

Query: 458 AHYLKM-LEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKG 504
             YL++  E++S  +       K D + LF ++  K D +YD  + +G
Sbjct: 379 KPYLELKKEVISCFLRTRGEFTKEDFNRLFGIDLGKADGLYDFFLERG 426

Length = 432
>gnl|CDD|227445 COG5114, COG5114, Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|239075 cd02335, ZZ_ADA2, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|203011 pfam04433, SWIRM, SWIRM domain Back     alignment and domain information
>gnl|CDD|227584 COG5259, RSC8, RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|239069 cd02249, ZZ, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239078 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|197633 smart00291, ZnF_ZZ, Zinc-binding domain, present in Dystrophin, CREB-binding protein Back     alignment and domain information
>gnl|CDD|144236 pfam00569, ZZ, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239085 cd02345, ZZ_dah, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239080 cd02340, ZZ_NBR1_like, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239083 cd02343, ZZ_EF, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 508
KOG0457438 consensus Histone acetyltransferase complex SAGA/A 100.0
COG5114432 Histone acetyltransferase complex SAGA/ADA, subuni 100.0
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 99.53
PF0443386 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM 99.43
KOG1279506 consensus Chromatin remodeling factor subunit and 99.37
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.17
cd0233549 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present 99.11
cd0233449 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr 98.86
cd0234348 ZZ_EF Zinc finger, ZZ type. Zinc finger present in 98.83
cd0233849 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre 98.82
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.79
cd0234549 ZZ_dah Zinc finger, ZZ type. Zinc finger present i 98.78
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.76
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 98.69
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 98.62
PLN03212249 Transcription repressor MYB5; Provisional 98.37
cd0224946 ZZ Zinc finger, ZZ type. Zinc finger present in dy 98.32
PLN03091459 hypothetical protein; Provisional 98.13
KOG0048238 consensus Transcription factor, Myb superfamily [T 98.06
cd0234043 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre 98.05
cd0233945 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre 98.04
cd0234148 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present 98.03
cd0234445 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present 97.93
smart0029144 ZnF_ZZ Zinc-binding domain, present in Dystrophin, 97.92
cd0233645 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present 97.89
PF0056946 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc 97.78
PLN03212249 Transcription repressor MYB5; Provisional 97.76
PLN03091459 hypothetical protein; Provisional 97.46
cd0233741 ZZ_CBP Zinc finger, ZZ type. Zinc finger present i 97.44
KOG0048238 consensus Transcription factor, Myb superfamily [T 97.01
KOG0049 939 consensus Transcription factor, Myb superfamily [T 96.81
KOG1280381 consensus Uncharacterized conserved protein contai 96.5
cd0234243 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre 96.38
KOG0049939 consensus Transcription factor, Myb superfamily [T 96.18
KOG4286966 consensus Dystrophin-like protein [Cell motility; 95.83
KOG0051607 consensus RNA polymerase I termination factor, Myb 95.15
KOG4582278 consensus Uncharacterized conserved protein, conta 94.83
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 94.54
KOG0051607 consensus RNA polymerase I termination factor, Myb 92.82
KOG4301434 consensus Beta-dystrobrevin [Cytoskeleton] 90.5
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 90.24
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 88.76
KOG0050617 consensus mRNA splicing protein CDC5 (Myb superfam 88.03
COG5147512 REB1 Myb superfamily proteins, including transcrip 87.39
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 83.98
KOG4282345 consensus Transcription factor GT-2 and related pr 83.68
KOG4167907 consensus Predicted DNA-binding protein, contains 82.66
COG5347319 GTPase-activating protein that regulates ARFs (ADP 81.49
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=6.9e-102  Score=793.93  Aligned_cols=408  Identities=50%  Similarity=0.810  Sum_probs=353.6

Q ss_pred             CcEEEeccCCCCcccHHHhhcCCCCCCCCCCCCeeccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCC
Q 010514            1 MVRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKS   80 (508)
Q Consensus         1 ~~ri~C~~C~~~~lC~~Cfs~G~e~~~H~~~H~y~vi~~~~~~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt   80 (508)
                      +|||+|++|+|||||++||+.|+|++.|+++|+|+||++++||+..++|||+||++||+|+++||||||++||+|||+||
T Consensus        27 ~i~ikCaeCp~fdLCl~CFs~GaE~~~H~~~H~Yrim~~~s~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKt  106 (438)
T KOG0457|consen   27 LIRIKCAECPDFDLCLQCFSVGAETGKHQNDHPYRIMDTNSFPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKT  106 (438)
T ss_pred             ceEEEeecCCCcchhHHHHhcccccCCCCCCCCceeecCCCCCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCccccccCCHHHHHHHHHHhHhhhhcchhHHhhhhccCCCCcccCCCCCccccccccCC
Q 010514           81 KSQCIDHYNAIYMNSPCFPLPDLSHVMGKNREELLAMAKEHQQVKKELPTVAELALKEDAPFSTRMKPETRKEDTTRQSS  160 (508)
Q Consensus        81 ~~ec~~hy~~~yi~~~~~plp~~~~~~~~~~~e~l~~~k~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~  160 (508)
                      .+||++||.++|++++++|+|++++.+|+.+.+++++++.+                 ..||++                
T Consensus       107 keeck~hy~k~fv~s~~~~~~~i~~~~~~~q~e~~~~~k~~-----------------~~~~~~----------------  153 (438)
T KOG0457|consen  107 KEECKEHYLKHFVNSPIFPLPDISLGIGVNQDEDAAMAKNR-----------------AEPFQP----------------  153 (438)
T ss_pred             hHHHHHHHHHHHhcCccccccccccccCcchHHHhhhcccc-----------------cccCCC----------------
Confidence            99999999999999999999999999999999988776521                 012210                


Q ss_pred             CCCccccccCCCCCCCCccchhccccccccccchhhhhhcCCCCcccccccccCCCCCCCCCccccccccCCCcCCCccc
Q 010514          161 SGLTTVEVNSIDPSNGNAFSFKKASNMTQVKESVKVEVLAEPQSDRSIGEKKLRTSGDERPSMKELSGYNFKRQEFEIEY  240 (508)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~e~~GYmP~R~DFE~Ey  240 (508)
                                                              ++        -.|+.++.++|..++++||||+|.|||.||
T Consensus       154 ----------------------------------------~~--------~~pr~p~~~~p~~~e~~gyMp~R~dFd~Ey  185 (438)
T KOG0457|consen  154 ----------------------------------------TD--------LVPRKPGVSNPLRREISGYMPGRLDFDEEY  185 (438)
T ss_pred             ----------------------------------------CC--------CCCCCCCCCCchHHHHhhhCccchhhhhhh
Confidence                                                    00        013444446889999999999999999999


Q ss_pred             CCchhhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhcccCCC---CCcCcCCChHHHHHHHhhhhhhc
Q 010514          241 DNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFILERNLLFP---DPFERNLSPEEREIYQQYKVFMR  317 (508)
Q Consensus       241 DNdAE~lladmeF~~~D~~~e~elKl~~l~~Yn~rL~eR~rRK~~i~e~~Ll~~---~~~~k~~tkeerel~~~l~~far  317 (508)
                      ||+||++|+||+|.++|+|.+.+||+++|+||++||++|.|||++|++|||+++   |++++++|+|+|+|++++|+|||
T Consensus       186 dn~AE~li~dm~f~e~D~~~d~elKla~ldiY~srl~eR~RRK~~I~d~nLl~~rk~q~~e~~~skEer~l~~s~k~fAR  265 (438)
T KOG0457|consen  186 DNEAEQLIRDMEFEEDDTEEDHELKLAVLDIYNSRLKERKRRKRFIRDRNLLDYRKNQAMEKRLSKEERELYNSIKVFAR  265 (438)
T ss_pred             cchhhhhHhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHhhccHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999996   77899999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhhccccCCCCCCccccccCCCcc
Q 010514          318 FHSKEDHEELLKSVIEEHRIVKRIQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENGQRVKESGQAGPSGKVLQRPNSLK  397 (508)
Q Consensus       318 f~~~~d~~~l~~~l~~e~~Lr~rI~~Lq~~R~~Gi~tl~e~~~Ye~~k~~Re~e~~~~~~~~~~~~~~~~~~~~~~n~~~  397 (508)
                      |+|+.||++|+.++..|.+|+.||.+||+||.+|+||++++.+|+++|.++. +.+.......      +......++..
T Consensus       266 ~~t~~d~~kfl~~~~eE~~L~~ri~~lqE~R~ag~tt~~e~~ky~~~k~~~~-~~s~~~~~~~------~~~~~i~~~~~  338 (438)
T KOG0457|consen  266 FLTKSDHDKFLGSVAEEKELRKRISDLQEYRSAGLTTNAEPNKYERLKFKEF-RESTALLLSS------GALRYIKNSNQ  338 (438)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeccccchhHHHHHHHH-HHHhhhcccc------chhhhhhcccc
Confidence            9999999999999999999999999999999999999999999999984433 3222111111      11111111110


Q ss_pred             ccccCCCCccCCCCccCCCCCCCcccccCCCCccccCCCcCCCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCC
Q 010514          398 EVEVSPRGVVRGSTSLQPFGNDSYSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNVS  477 (508)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ldi~~~pg~~lLs~~Ek~LCs~lrL~P~~YL~iK~~LirE~~k~g~l  477 (508)
                      .        ..++.   .....+...+.++++++++.++|+.++||++|+.||+.++|+|++||.+|++|++|..|+|.+
T Consensus       339 ~--------~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~q~Lse~E~~lc~~~~~~p~~yLe~~~vl~~e~~k~~~~  407 (438)
T KOG0457|consen  339 E--------ASGSA---SKRPVQQQSIYKSATPLDISGAPDTQLLSEDEKRLCQELKILPKLYLELKEVLSREIKKGGTL  407 (438)
T ss_pred             c--------ccccc---ccCcccccccccCCCHHHHhcchhhhhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHhccCcc
Confidence            0        00000   011112223677889999999999999999999999999999999999999999999998899


Q ss_pred             CHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514          478 KKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ  507 (508)
Q Consensus       478 ~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~  507 (508)
                      ++.+|..++|||++|+++|||||++.||+.
T Consensus       408 kks~a~~l~Kid~~Kvd~vyd~~~~~~~~~  437 (438)
T KOG0457|consen  408 KKSDAYRLFKIDPRKVDRVYDFLIAQGWIG  437 (438)
T ss_pred             cchhHHHHhcCCcchHHHHHHHHHHhhhcc
Confidence            999999999999999999999999999986

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>cd02335 ZZ_ADA2 Zinc finger, ZZ type Back     alignment and domain information
>cd02334 ZZ_dystrophin Zinc finger, ZZ type Back     alignment and domain information
>cd02343 ZZ_EF Zinc finger, ZZ type Back     alignment and domain information
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd02345 ZZ_dah Zinc finger, ZZ type Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>cd02249 ZZ Zinc finger, ZZ type Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type Back     alignment and domain information
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type Back     alignment and domain information
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type Back     alignment and domain information
>cd02344 ZZ_HERC2 Zinc finger, ZZ type Back     alignment and domain information
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein Back     alignment and domain information
>cd02336 ZZ_RSC8 Zinc finger, ZZ type Back     alignment and domain information
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>cd02337 ZZ_CBP Zinc finger, ZZ type Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only] Back     alignment and domain information
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only] Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription] Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query508
2elk_A58 Solution Structure Of The Sant Domain Of Fission Ye 4e-07
2cuj_A108 Solution Structure Of Swirm Domain Of Mouse Transcr 1e-06
2aqe_A90 Structural And Functional Analysis Of Ada2 Alpha Sw 2e-06
1x41_A60 Solution Structure Of The Myb-Like Dna Binding Doma 8e-06
2elj_A88 Solution Structure Of The Swirm Domain Of Baker's Y 2e-05
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast Spcc24b10.08c Protein Length = 58 Back     alignment and structure 
Iteration: 1

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 48 DWNADEEILLLEGIEMYGFGNWGEVSEHVG-TKSKSQCIDHYNAIYM 93
          +W ADEE+LL++  E  G GNW +++++VG  ++K +C DHY   Y+
Sbjct: 11 NWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57
>pdb|2CUJ|A Chain A, Solution Structure Of Swirm Domain Of Mouse Transcriptional Adaptor 2-Like Length = 108 Back     alignment and structure
>pdb|2AQE|A Chain A, Structural And Functional Analysis Of Ada2 Alpha Swirm Domain Length = 90 Back     alignment and structure
>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of Human Transcriptional Adaptor 2-Like, Isoform B Length = 60 Back     alignment and structure
>pdb|2ELJ|A Chain A, Solution Structure Of The Swirm Domain Of Baker's Yeast Transcriptional Adapter 2 Length = 88 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query508
2cuj_A108 Transcriptional adaptor 2-like; transcriptional re 1e-27
2aqe_A90 Transcriptional adaptor 2, ADA2 alpha; helix-turn- 8e-27
2elj_A88 Transcriptional adapter 2; YDR448W, structural gen 6e-25
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 9e-23
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 2e-22
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 5e-22
2e5r_A63 Dystrobrevin alpha; ZZ domain, structural genomics 6e-10
2fc7_A82 ZZZ3 protein; structure genomics, ZZ domain, struc 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 1e-07
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 5e-07
1tot_A52 CREB-binding protein; zinc binding, CBP, TAZ2, tra 2e-06
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 6e-06
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 2e-05
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 2e-05
2dip_A98 Zinc finger SWIM domain-containing protein 2; ZZ d 2e-05
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 4e-05
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 5e-05
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 8e-05
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 9e-05
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 2e-04
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 4e-04
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 6e-04
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18 Length = 108 Back     alignment and structure
 Score =  105 bits (263), Expect = 1e-27
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 1/105 (0%)

Query: 405 GVVRGSTSLQPFGNDSYSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKML 464
           G     + L P    + ++   S    +++G  G + L+E EK LC  ++++P  YL+  
Sbjct: 4   GSSGIDSGLSPSVLMASNSGRRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYK 63

Query: 465 EILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKG-IAQA 508
             L  E +K    + + A  L K++ NK  ++YD L+R+G I +A
Sbjct: 64  SALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIREGYITKA 108
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A Length = 90 Back     alignment and structure
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae} Length = 88 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 63 Back     alignment and structure
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 82 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Length = 52 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 98 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query508
2cuj_A108 Transcriptional adaptor 2-like; transcriptional re 99.93
2aqe_A90 Transcriptional adaptor 2, ADA2 alpha; helix-turn- 99.93
2elj_A88 Transcriptional adapter 2; YDR448W, structural gen 99.92
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.61
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.49
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.46
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.16
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.15
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.11
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.11
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.07
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.06
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.03
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.02
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.0
2cjj_A93 Radialis; plant development, DNA-binding protein, 98.93
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 98.9
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.85
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 98.81
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 98.76
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.24
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.76
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.75
2e5r_A63 Dystrobrevin alpha; ZZ domain, structural genomics 98.73
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.68
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.67
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 98.66
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.63
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.58
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.56
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.55
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.5
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 98.49
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 98.47
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.46
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.45
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.42
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.42
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 98.4
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 98.39
2fc7_A82 ZZZ3 protein; structure genomics, ZZ domain, struc 98.39
2dip_A98 Zinc finger SWIM domain-containing protein 2; ZZ d 98.21
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 98.16
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 98.15
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 98.02
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 97.95
2crg_A70 Metastasis associated protein MTA3; transcription 97.94
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 97.92
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 97.85
1tot_A52 CREB-binding protein; zinc binding, CBP, TAZ2, tra 97.81
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 97.64
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 96.58
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 96.52
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 96.41
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 96.07
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 95.95
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 95.86
2fq3_A104 Transcription regulatory protein SWI3; four-helix 95.84
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 95.16
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 94.7
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 94.23
2dce_A111 KIAA1915 protein; swirm domain, structural genomic 93.93
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 93.81
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 92.55
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 91.58
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 90.53
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 89.34
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 84.24
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18 Back     alignment and structure
Probab=99.93  E-value=5.2e-26  Score=197.00  Aligned_cols=85  Identities=29%  Similarity=0.511  Sum_probs=82.0

Q ss_pred             ccCCCCccccCCCcCCCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHC
Q 010514          424 IASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRK  503 (508)
Q Consensus       424 ~~~~~~~ldi~~~pg~~lLs~~Ek~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~  503 (508)
                      .+++..+|||+++||+++||++|++||+++||+|.+||.+|++||+|+.++|.+++++|+.+|+||++|+++|||||+++
T Consensus        23 ~r~~~~~ldi~~~pg~~LLs~~E~~LCs~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kID~~K~~rIydff~~~  102 (108)
T 2cuj_A           23 GRRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIRE  102 (108)
T ss_dssp             CCSSCCCCCCTTSTTTTTSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHTT
T ss_pred             CCCCCCccCccCCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhcccHHHHHHHHHHHHHc
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 010514          504 GIAQA  508 (508)
Q Consensus       504 Gwi~~  508 (508)
                      |||.+
T Consensus       103 GWi~~  107 (108)
T 2cuj_A          103 GYITK  107 (108)
T ss_dssp             TSSCC
T ss_pred             CCCCC
Confidence            99973
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A Back     alignment and structure
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6 Back     alignment and structure
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6 Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 508
d2cuja1101 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, 7e-26
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 5e-11
d2fc7a169 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing p 6e-07
d1tota152 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse 6e-07
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 1e-06
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 3e-06
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 5e-06
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 1e-05
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 1e-05
d2dipa185 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing p 6e-05
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 7e-05
d2crga157 a.4.1.3 (A:8-64) Metastasis associated protein MTA 2e-04
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 3e-04
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 3e-04
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 0.002
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 0.004
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]} Length = 101 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SWIRM domain
domain: Transcriptional adaptor 2-like, TADA2L
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 99.1 bits (247), Expect = 7e-26
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 430 DWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVE 489
             +++G  G + L+E EK LC  ++++P  YL+    L  E +K    + + A  L K++
Sbjct: 22  PLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKID 81

Query: 490 PNKVDRVYDMLVRKG-IAQA 508
            NK  ++YD L+R+G I +A
Sbjct: 82  VNKTRKIYDFLIREGYITKA 101
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query508
d2cuja1101 Transcriptional adaptor 2-like, TADA2L {Mouse (Mus 99.94
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.56
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.25
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.24
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.09
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.0
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 98.97
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.96
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 98.95
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.95
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.87
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.73
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 98.67
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 98.44
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 98.35
d2fc7a169 Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu 98.17
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 97.84
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.72
d1tota152 CREB-binding protein, CBP {Mouse (Mus musculus) [T 97.42
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 97.26
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 97.15
d2dipa185 Zinc finger ZZ-type-containing protein 2 {Human (H 97.14
d2fq3a185 Transcription regulatory protein swi3 {Baker's yea 97.13
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 96.37
d2dw4a1102 Lysine-specific histone demethylase 1, LSD1 {Human 95.95
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 88.21
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 87.37
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 87.09
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SWIRM domain
domain: Transcriptional adaptor 2-like, TADA2L
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.6e-27  Score=202.28  Aligned_cols=84  Identities=30%  Similarity=0.519  Sum_probs=81.8

Q ss_pred             ccCCCCccccCCCcCCCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHC
Q 010514          424 IASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRK  503 (508)
Q Consensus       424 ~~~~~~~ldi~~~pg~~lLs~~Ek~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~  503 (508)
                      .++..+||||+++||+++||++|++||+++||+|.+||.+|++||+|++++|.++++||+.+|+||++|+++|||||+++
T Consensus        16 ~rk~~~pldi~~~p~~~lLs~~E~~LC~~lrL~P~~YL~~K~~l~~E~~k~g~l~k~da~~~~kiD~~K~~rIydfl~~~   95 (101)
T d2cuja1          16 GRRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIRE   95 (101)
T ss_dssp             CCSSCCCCCCTTSTTTTTSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCccCCCChhhcCHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCCcHHHHHHHhcccHHHHHHHHHHHHHc
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 010514          504 GIAQ  507 (508)
Q Consensus       504 Gwi~  507 (508)
                      |||+
T Consensus        96 GWi~   99 (101)
T d2cuja1          96 GYIT   99 (101)
T ss_dssp             TSSC
T ss_pred             cCcc
Confidence            9996
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fq3a1 a.4.1.18 (A:311-395) Transcription regulatory protein swi3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure